2025-01-31 09:31:57,534 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:57,537 INFO Extracting cutcounts from bam file 2025-01-31 09:33:34,686 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:34,734 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:34,737 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:34,738 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:34,738 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:34,739 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:34,739 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:37,725 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:33:37,849 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:33:37,850 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:33:37,864 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:33:37,897 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:33:37,939 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:33:38,496 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:33:38,552 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:33:38,592 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:33:38,750 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:33:38,818 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:33:38,857 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:33:39,240 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:33:39,323 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:33:39,372 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:33:39,884 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:33:39,885 INFO Total cutcounts = 14870012 2025-01-31 09:33:39,890 INFO Smoothing signal using MODWT 2025-01-31 09:33:39,892 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:33:39,931 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:39,933 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:39,935 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:39,935 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:39,935 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:39,952 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:42,353 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:48,130 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:49,410 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:50,778 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:18,776 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:25,133 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:22,468 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:29,438 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:33,745 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:37,336 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:42,536 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:57,370 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:53,466 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:54,167 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:54,462 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:02,222 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:40:02,222 INFO Estimating parameters of background model 2025-01-31 09:40:02,222 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:40:06,615 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:40:06,860 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:40:06,939 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:40:07,477 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:40:08,082 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:40:08,155 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:40:25,989 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:40:25,991 DEBUG chr5: Signal quantile: 0.994. signal threshold: 17. Best RMSEA: 0.030 2025-01-31 09:40:26,914 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:40:26,916 DEBUG chr3: Signal quantile: 0.995. signal threshold: 14. Best RMSEA: 0.032 2025-01-31 09:40:27,686 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:40:27,735 DEBUG chr4: Signal quantile: 0.995. signal threshold: 18. Best RMSEA: 0.031 2025-01-31 09:40:29,484 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:40:29,486 WARNING chrX: Best RMSEA: 0.055. Chromosome fit might be poorly approximated. 2025-01-31 09:40:29,486 DEBUG chrX: Signal quantile: 0.994. signal threshold: 8. Best RMSEA: 0.055 2025-01-31 09:40:29,708 DEBUG chr5 total SNP count: 250228 2025-01-31 09:40:29,708 DEBUG chr5 length: 151834684 2025-01-31 09:40:29,708 DEBUG ----------------------------------------- 2025-01-31 09:40:29,708 INFO Processing SNPs in chr5 2025-01-31 09:40:29,968 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 250228)] 2025-01-31 09:40:30,151 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:30,447 DEBUG chr3 total SNP count: 255642 2025-01-31 09:40:30,448 DEBUG chr3 length: 160039680 2025-01-31 09:40:30,448 DEBUG ----------------------------------------- 2025-01-31 09:40:30,448 INFO Processing SNPs in chr3 2025-01-31 09:40:30,698 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 255642)] 2025-01-31 09:40:30,871 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:31,058 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:40:31,099 DEBUG chr2: Signal quantile: 0.994. signal threshold: 16. Best RMSEA: 0.032 2025-01-31 09:40:31,294 DEBUG chr4 total SNP count: 251971 2025-01-31 09:40:31,294 DEBUG chr4 length: 156508116 2025-01-31 09:40:31,294 DEBUG ----------------------------------------- 2025-01-31 09:40:31,294 INFO Processing SNPs in chr4 2025-01-31 09:40:31,553 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:40:31,556 DEBUG chr1: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.033 2025-01-31 09:40:31,684 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 62492), (62492, 251971)] 2025-01-31 09:40:31,809 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:33,316 DEBUG chrX total SNP count: 234814 2025-01-31 09:40:33,317 DEBUG chrX length: 171031299 2025-01-31 09:40:33,317 DEBUG ----------------------------------------- 2025-01-31 09:40:33,317 INFO Processing SNPs in chrX 2025-01-31 09:40:33,680 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32194), (32194, 32244), (32244, 32663), (32663, 62656), (62656, 168596), (168596, 234814)] 2025-01-31 09:40:33,789 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:34,721 DEBUG chr2 total SNP count: 307171 2025-01-31 09:40:34,721 DEBUG chr2 length: 182113224 2025-01-31 09:40:34,721 DEBUG ----------------------------------------- 2025-01-31 09:40:34,721 INFO Processing SNPs in chr2 2025-01-31 09:40:35,187 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 299318), (299318, 307171)] 2025-01-31 09:40:35,308 DEBUG chr1 total SNP count: 333716 2025-01-31 09:40:35,308 DEBUG chr1 length: 195471971 2025-01-31 09:40:35,308 DEBUG ----------------------------------------- 2025-01-31 09:40:35,308 INFO Processing SNPs in chr1 2025-01-31 09:40:35,389 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:35,631 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 333716)] 2025-01-31 09:40:35,854 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:37,539 DEBUG Segmenting atomic regions: 2025-01-31 09:40:37,643 DEBUG Processing 1/106 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:39,166 DEBUG Segmenting atomic regions: 2025-01-31 09:40:39,280 DEBUG Processing 1/207 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,345 DEBUG Processing 2/106 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:39,548 DEBUG Processing 3/106 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:39,755 DEBUG Processing 4/106 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:39,931 DEBUG Processing 2/207 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,961 DEBUG Processing 5/106 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:40,144 DEBUG Processing 3/207 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,166 DEBUG Processing 6/106 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:40,357 DEBUG Processing 4/207 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,374 DEBUG Processing 7/106 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:40,569 DEBUG Processing 5/207 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,577 DEBUG Processing 8/106 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:40,779 DEBUG Processing 6/207 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,781 DEBUG Processing 9/106 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:40,991 DEBUG Processing 10/106 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:40,992 DEBUG Processing 7/207 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,195 DEBUG Processing 11/106 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:41,203 DEBUG Processing 8/207 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,402 DEBUG Processing 12/106 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:41,416 DEBUG Processing 9/207 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,606 DEBUG Processing 13/106 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:41,626 DEBUG Processing 10/207 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,831 DEBUG Processing 14/106 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:41,839 DEBUG Processing 11/207 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,049 DEBUG Processing 12/207 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,066 DEBUG Processing 15/106 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:42,260 DEBUG Processing 13/207 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,304 DEBUG Processing 16/106 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:42,471 DEBUG Processing 14/207 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,538 DEBUG Processing 17/106 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:42,681 DEBUG Processing 15/207 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,764 DEBUG Processing 18/106 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:42,895 DEBUG Processing 16/207 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,970 DEBUG Processing 19/106 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:43,106 DEBUG Processing 17/207 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,176 DEBUG Processing 20/106 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:43,318 DEBUG Processing 18/207 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,383 DEBUG Processing 21/106 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:43,530 DEBUG Processing 19/207 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,593 DEBUG Processing 22/106 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:43,740 DEBUG Processing 20/207 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,809 DEBUG Processing 23/106 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:43,951 DEBUG Processing 21/207 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,014 DEBUG Processing 24/106 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:44,164 DEBUG Processing 22/207 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,220 DEBUG Processing 25/106 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:44,373 DEBUG Processing 23/207 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,424 DEBUG Processing 26/106 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:44,586 DEBUG Processing 24/207 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,629 DEBUG Processing 27/106 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:44,803 DEBUG Processing 25/207 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,836 DEBUG Processing 28/106 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:45,018 DEBUG Processing 26/207 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,041 DEBUG Processing 29/106 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:45,229 DEBUG Processing 27/207 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,243 DEBUG Processing 30/106 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:45,441 DEBUG Processing 28/207 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,449 DEBUG Processing 31/106 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:45,652 DEBUG Processing 29/207 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,655 DEBUG Processing 32/106 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:45,861 DEBUG Processing 33/106 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:45,880 DEBUG Processing 30/207 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,065 DEBUG Processing 34/106 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:46,103 DEBUG Processing 31/207 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,270 DEBUG Processing 35/106 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:46,313 DEBUG Processing 32/207 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,473 DEBUG Processing 36/106 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:46,523 DEBUG Processing 33/207 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,681 DEBUG Processing 37/106 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:46,736 DEBUG Processing 34/207 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,901 DEBUG Processing 38/106 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:46,945 DEBUG Processing 35/207 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,134 DEBUG Processing 39/106 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:47,158 DEBUG Processing 36/207 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,354 DEBUG Processing 40/106 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:47,374 DEBUG Processing 37/207 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,568 DEBUG Processing 41/106 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:47,590 DEBUG Processing 38/207 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,791 DEBUG Processing 42/106 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:47,810 DEBUG Processing 39/207 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,002 DEBUG Processing 43/106 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:48,024 DEBUG Processing 40/207 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,230 DEBUG Processing 44/106 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:48,249 DEBUG Processing 41/207 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,465 DEBUG Processing 42/207 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,468 DEBUG Processing 45/106 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:48,681 DEBUG Processing 43/207 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,702 DEBUG Processing 46/106 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:48,905 DEBUG Processing 44/207 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,917 DEBUG Processing 47/106 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:49,121 DEBUG Processing 48/106 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:49,128 DEBUG Processing 45/207 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,328 DEBUG Processing 49/106 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:49,340 DEBUG Processing 46/207 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,533 DEBUG Processing 50/106 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:49,552 DEBUG Processing 47/207 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,741 DEBUG Processing 51/106 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:49,765 DEBUG Processing 48/207 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,950 DEBUG Processing 52/106 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:49,978 DEBUG Processing 49/207 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,152 DEBUG Processing 53/106 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:50,187 DEBUG Processing 50/207 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,353 DEBUG Processing 54/106 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:50,395 DEBUG Processing 51/207 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,556 DEBUG Processing 55/106 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:50,603 DEBUG Processing 52/207 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,757 DEBUG Processing 56/106 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:50,811 DEBUG Processing 53/207 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,959 DEBUG Processing 57/106 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:51,019 DEBUG Processing 54/207 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,161 DEBUG Processing 58/106 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:51,225 DEBUG Processing 55/207 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,364 DEBUG Processing 59/106 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:51,434 DEBUG Processing 56/207 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,566 DEBUG Processing 60/106 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:51,642 DEBUG Processing 57/207 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,766 DEBUG Processing 61/106 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:51,849 DEBUG Processing 58/207 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,965 DEBUG Processing 62/106 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:52,056 DEBUG Processing 59/207 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,167 DEBUG Processing 63/106 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:52,264 DEBUG Processing 60/207 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,366 DEBUG Processing 64/106 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:52,473 DEBUG Processing 61/207 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,570 DEBUG Processing 65/106 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:52,683 DEBUG Processing 62/207 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,770 DEBUG Processing 66/106 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:52,891 DEBUG Processing 63/207 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,974 DEBUG Processing 67/106 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:53,100 DEBUG Processing 64/207 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,176 DEBUG Processing 68/106 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:53,311 DEBUG Processing 65/207 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,379 DEBUG Processing 69/106 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:53,519 DEBUG Processing 66/207 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,582 DEBUG Processing 70/106 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:53,727 DEBUG Processing 67/207 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,786 DEBUG Processing 71/106 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:53,938 DEBUG Processing 68/207 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,994 DEBUG Processing 72/106 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:54,147 DEBUG Processing 69/207 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,197 DEBUG Processing 73/106 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:54,359 DEBUG Processing 70/207 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,403 DEBUG Processing 74/106 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:54,573 DEBUG Processing 71/207 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,609 DEBUG Processing 75/106 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:54,785 DEBUG Processing 72/207 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,815 DEBUG Processing 76/106 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:54,996 DEBUG Processing 73/207 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,019 DEBUG Processing 77/106 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:55,206 DEBUG Processing 74/207 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,223 DEBUG Processing 78/106 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:55,419 DEBUG Processing 75/207 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,430 DEBUG Processing 79/106 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:55,631 DEBUG Processing 76/207 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,637 DEBUG Processing 80/106 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:55,846 DEBUG Processing 77/207 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,846 DEBUG Processing 81/106 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:56,052 DEBUG Processing 82/106 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:56,057 DEBUG Processing 78/207 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,257 DEBUG Processing 83/106 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:56,270 DEBUG Processing 79/207 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,464 DEBUG Processing 84/106 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:56,483 DEBUG Processing 80/207 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,668 DEBUG Processing 85/106 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:56,696 DEBUG Processing 81/207 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,887 DEBUG Processing 86/106 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:56,905 DEBUG Processing 82/207 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,107 DEBUG Processing 87/106 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:57,114 DEBUG Processing 83/207 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,309 DEBUG Processing 88/106 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:57,322 DEBUG Processing 84/207 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,517 DEBUG Processing 89/106 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:57,539 DEBUG Processing 85/207 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,721 DEBUG Processing 90/106 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:57,751 DEBUG Processing 86/207 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,925 DEBUG Processing 91/106 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:57,962 DEBUG Processing 87/207 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,131 DEBUG Processing 92/106 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:58,173 DEBUG Processing 88/207 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,331 DEBUG Processing 93/106 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:58,381 DEBUG Processing 89/207 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,531 DEBUG Processing 94/106 atomic regions from SNP 27993 to 28593 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:58,587 DEBUG Processing 90/207 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,733 DEBUG Processing 95/106 atomic regions from SNP 28293 to 28893 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:58,797 DEBUG Processing 91/207 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,931 DEBUG Processing 96/106 atomic regions from SNP 28593 to 29193 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:59,008 DEBUG Processing 92/207 atomic regions from SNP 27391 to 27991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,131 DEBUG Processing 97/106 atomic regions from SNP 28893 to 29493 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:59,216 DEBUG Processing 93/207 atomic regions from SNP 27691 to 28291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,335 DEBUG Processing 98/106 atomic regions from SNP 29193 to 29793 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:59,343 DEBUG Segmenting atomic regions: 2025-01-31 09:40:59,427 DEBUG Processing 94/207 atomic regions from SNP 27991 to 28591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,455 DEBUG Processing 1/833 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,541 DEBUG Processing 99/106 atomic regions from SNP 29493 to 30093 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:59,641 DEBUG Processing 95/207 atomic regions from SNP 28291 to 28891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,743 DEBUG Processing 100/106 atomic regions from SNP 29793 to 30393 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:59,850 DEBUG Processing 96/207 atomic regions from SNP 28591 to 29191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,945 DEBUG Processing 101/106 atomic regions from SNP 30093 to 30693 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,057 DEBUG Processing 97/207 atomic regions from SNP 28891 to 29491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,149 DEBUG Processing 102/106 atomic regions from SNP 30393 to 30993 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,226 DEBUG Processing 2/833 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,264 DEBUG Processing 98/207 atomic regions from SNP 29191 to 29791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,349 DEBUG Processing 103/106 atomic regions from SNP 30693 to 31293 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,433 DEBUG Processing 3/833 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,474 DEBUG Processing 99/207 atomic regions from SNP 29491 to 30091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,551 DEBUG Segmenting atomic regions: 2025-01-31 09:41:00,556 DEBUG Processing 104/106 atomic regions from SNP 30993 to 31593 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,644 DEBUG Processing 4/833 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,662 DEBUG Processing 1/851 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,687 DEBUG Processing 100/207 atomic regions from SNP 29791 to 30391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,760 DEBUG Processing 105/106 atomic regions from SNP 31293 to 31893 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,854 DEBUG Processing 5/833 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,899 DEBUG Processing 101/207 atomic regions from SNP 30091 to 30691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:00,965 DEBUG Processing 106/106 atomic regions from SNP 31593 to 32193 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:01,063 DEBUG Processing 6/833 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,073 DEBUG Unique SNPs positions in subchromosome 1: 32194 2025-01-31 09:41:01,110 DEBUG Subchromosome time: 27.32118490699213, subchromosome SNPs: 32194 2025-01-31 09:41:01,110 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:01,116 DEBUG Processing 102/207 atomic regions from SNP 30391 to 30991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,160 DEBUG Segmenting atomic regions: 2025-01-31 09:41:01,261 DEBUG Processing 1/1 atomic regions from SNP 0 to 418 for chrX (subchromosome 3 of 6). 2025-01-31 09:41:01,272 DEBUG Processing 7/833 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,312 DEBUG Unique SNPs positions in subchromosome 3: 419 2025-01-31 09:41:01,315 DEBUG Subchromosome time: 0.20506648800801486, subchromosome SNPs: 419 2025-01-31 09:41:01,323 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:01,325 DEBUG Processing 103/207 atomic regions from SNP 30691 to 31291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,358 DEBUG Processing 2/851 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,484 DEBUG Processing 8/833 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,536 DEBUG Processing 104/207 atomic regions from SNP 30991 to 31591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,571 DEBUG Processing 3/851 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,695 DEBUG Processing 9/833 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,747 DEBUG Processing 105/207 atomic regions from SNP 31291 to 31891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,781 DEBUG Processing 4/851 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,905 DEBUG Processing 10/833 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,958 DEBUG Processing 106/207 atomic regions from SNP 31591 to 32191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,994 DEBUG Processing 5/851 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,113 DEBUG Processing 11/833 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,166 DEBUG Processing 107/207 atomic regions from SNP 31891 to 32491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,204 DEBUG Processing 6/851 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,322 DEBUG Processing 12/833 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,375 DEBUG Processing 108/207 atomic regions from SNP 32191 to 32791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,414 DEBUG Processing 7/851 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,531 DEBUG Processing 13/833 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,585 DEBUG Processing 109/207 atomic regions from SNP 32491 to 33091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,625 DEBUG Processing 8/851 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,744 DEBUG Processing 14/833 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,794 DEBUG Processing 110/207 atomic regions from SNP 32791 to 33391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,838 DEBUG Processing 9/851 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,951 DEBUG Processing 15/833 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,004 DEBUG Processing 111/207 atomic regions from SNP 33091 to 33691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,054 DEBUG Processing 10/851 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,166 DEBUG Processing 16/833 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,216 DEBUG Processing 112/207 atomic regions from SNP 33391 to 33991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,265 DEBUG Processing 11/851 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,373 DEBUG Processing 17/833 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,425 DEBUG Processing 113/207 atomic regions from SNP 33691 to 34291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,473 DEBUG Processing 12/851 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,580 DEBUG Processing 18/833 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,633 DEBUG Processing 114/207 atomic regions from SNP 33991 to 34591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,680 DEBUG Processing 13/851 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,789 DEBUG Processing 19/833 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,844 DEBUG Processing 115/207 atomic regions from SNP 34291 to 34891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,891 DEBUG Processing 14/851 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,002 DEBUG Processing 20/833 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,058 DEBUG Processing 116/207 atomic regions from SNP 34591 to 35191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,107 DEBUG Processing 15/851 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,214 DEBUG Processing 21/833 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,267 DEBUG Processing 117/207 atomic regions from SNP 34891 to 35491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,319 DEBUG Processing 16/851 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,426 DEBUG Processing 22/833 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,479 DEBUG Processing 118/207 atomic regions from SNP 35191 to 35791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,528 DEBUG Processing 17/851 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,635 DEBUG Processing 23/833 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,686 DEBUG Processing 119/207 atomic regions from SNP 35491 to 36091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,741 DEBUG Processing 18/851 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,845 DEBUG Processing 24/833 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,847 DEBUG Segmenting atomic regions: 2025-01-31 09:41:04,894 DEBUG Processing 120/207 atomic regions from SNP 35791 to 36391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,947 DEBUG Processing 1/98 atomic regions from SNP 0 to 603 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:04,954 DEBUG Processing 19/851 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,051 DEBUG Processing 25/833 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,102 DEBUG Processing 121/207 atomic regions from SNP 36091 to 36691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,153 DEBUG Processing 2/98 atomic regions from SNP 303 to 906 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:05,164 DEBUG Processing 20/851 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,258 DEBUG Processing 26/833 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,309 DEBUG Processing 122/207 atomic regions from SNP 36391 to 36991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,355 DEBUG Processing 3/98 atomic regions from SNP 606 to 1209 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:05,371 DEBUG Processing 21/851 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,465 DEBUG Processing 27/833 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,517 DEBUG Processing 123/207 atomic regions from SNP 36691 to 37291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,558 DEBUG Processing 4/98 atomic regions from SNP 909 to 1512 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:05,582 DEBUG Processing 22/851 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,675 DEBUG Processing 28/833 atomic regions from SNP 8127 to 8727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,730 DEBUG Processing 124/207 atomic regions from SNP 36991 to 37591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,766 DEBUG Processing 5/98 atomic regions from SNP 1212 to 1815 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:05,797 DEBUG Processing 23/851 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,887 DEBUG Processing 29/833 atomic regions from SNP 8427 to 9027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,944 DEBUG Processing 125/207 atomic regions from SNP 37291 to 37891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,970 DEBUG Processing 6/98 atomic regions from SNP 1515 to 2118 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:06,010 DEBUG Processing 24/851 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,093 DEBUG Processing 30/833 atomic regions from SNP 8727 to 9327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,154 DEBUG Processing 126/207 atomic regions from SNP 37591 to 38191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,173 DEBUG Processing 7/98 atomic regions from SNP 1818 to 2421 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:06,220 DEBUG Processing 25/851 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,298 DEBUG Processing 31/833 atomic regions from SNP 9027 to 9627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,364 DEBUG Processing 127/207 atomic regions from SNP 37891 to 38491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,401 DEBUG Processing 8/98 atomic regions from SNP 2121 to 2724 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:06,429 DEBUG Processing 26/851 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,503 DEBUG Processing 32/833 atomic regions from SNP 9327 to 9927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,573 DEBUG Processing 128/207 atomic regions from SNP 38191 to 38791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,615 DEBUG Processing 9/98 atomic regions from SNP 2424 to 3027 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:06,635 DEBUG Processing 27/851 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,710 DEBUG Processing 33/833 atomic regions from SNP 9627 to 10227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,783 DEBUG Processing 129/207 atomic regions from SNP 38491 to 39091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,824 DEBUG Processing 10/98 atomic regions from SNP 2727 to 3330 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:06,843 DEBUG Processing 28/851 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,915 DEBUG Processing 34/833 atomic regions from SNP 9927 to 10527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,992 DEBUG Processing 130/207 atomic regions from SNP 38791 to 39391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,028 DEBUG Processing 11/98 atomic regions from SNP 3030 to 3633 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:07,052 DEBUG Processing 29/851 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,121 DEBUG Processing 35/833 atomic regions from SNP 10227 to 10827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,203 DEBUG Processing 131/207 atomic regions from SNP 39091 to 39691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,232 DEBUG Processing 12/98 atomic regions from SNP 3333 to 3936 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:07,264 DEBUG Processing 30/851 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,328 DEBUG Processing 36/833 atomic regions from SNP 10527 to 11127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,412 DEBUG Processing 132/207 atomic regions from SNP 39391 to 39991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,435 DEBUG Processing 13/98 atomic regions from SNP 3636 to 4239 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:07,473 DEBUG Processing 31/851 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,534 DEBUG Processing 37/833 atomic regions from SNP 10827 to 11427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,622 DEBUG Processing 133/207 atomic regions from SNP 39691 to 40291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,636 DEBUG Processing 14/98 atomic regions from SNP 3939 to 4542 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:07,683 DEBUG Processing 32/851 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,738 DEBUG Processing 38/833 atomic regions from SNP 11127 to 11727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,829 DEBUG Processing 134/207 atomic regions from SNP 39991 to 40591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,837 DEBUG Processing 15/98 atomic regions from SNP 4242 to 4845 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:07,894 DEBUG Processing 33/851 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,947 DEBUG Processing 39/833 atomic regions from SNP 11427 to 12027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,038 DEBUG Processing 135/207 atomic regions from SNP 40291 to 40891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,048 DEBUG Processing 16/98 atomic regions from SNP 4545 to 5148 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:08,105 DEBUG Processing 34/851 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,154 DEBUG Processing 40/833 atomic regions from SNP 11727 to 12327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,246 DEBUG Processing 136/207 atomic regions from SNP 40591 to 41191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,249 DEBUG Processing 17/98 atomic regions from SNP 4848 to 5451 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:08,313 DEBUG Processing 35/851 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,359 DEBUG Processing 41/833 atomic regions from SNP 12027 to 12627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,449 DEBUG Processing 18/98 atomic regions from SNP 5151 to 5754 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:08,453 DEBUG Processing 137/207 atomic regions from SNP 40891 to 41491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,529 DEBUG Processing 36/851 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,571 DEBUG Processing 42/833 atomic regions from SNP 12327 to 12927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,652 DEBUG Processing 19/98 atomic regions from SNP 5454 to 6057 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:08,661 DEBUG Processing 138/207 atomic regions from SNP 41191 to 41791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,736 DEBUG Processing 37/851 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,778 DEBUG Processing 43/833 atomic regions from SNP 12627 to 13227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,856 DEBUG Processing 20/98 atomic regions from SNP 5757 to 6360 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:08,873 DEBUG Processing 139/207 atomic regions from SNP 41491 to 42091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,950 DEBUG Processing 38/851 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,987 DEBUG Processing 44/833 atomic regions from SNP 12927 to 13527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,058 DEBUG Processing 21/98 atomic regions from SNP 6060 to 6663 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:09,080 DEBUG Processing 140/207 atomic regions from SNP 41791 to 42391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,164 DEBUG Processing 39/851 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,193 DEBUG Processing 45/833 atomic regions from SNP 13227 to 13827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,259 DEBUG Processing 22/98 atomic regions from SNP 6363 to 6966 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:09,286 DEBUG Processing 141/207 atomic regions from SNP 42091 to 42691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,373 DEBUG Processing 40/851 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,400 DEBUG Processing 46/833 atomic regions from SNP 13527 to 14127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,461 DEBUG Processing 23/98 atomic regions from SNP 6666 to 7269 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:09,492 DEBUG Processing 142/207 atomic regions from SNP 42391 to 42991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,585 DEBUG Processing 41/851 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,612 DEBUG Processing 47/833 atomic regions from SNP 13827 to 14427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,666 DEBUG Processing 24/98 atomic regions from SNP 6969 to 7572 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:09,703 DEBUG Processing 143/207 atomic regions from SNP 42691 to 43291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,798 DEBUG Processing 42/851 atomic regions from SNP 12341 to 12941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,825 DEBUG Processing 48/833 atomic regions from SNP 14127 to 14727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,873 DEBUG Processing 25/98 atomic regions from SNP 7272 to 7875 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:09,913 DEBUG Processing 144/207 atomic regions from SNP 42991 to 43591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,008 DEBUG Processing 43/851 atomic regions from SNP 12641 to 13241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,031 DEBUG Processing 49/833 atomic regions from SNP 14427 to 15027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,073 DEBUG Processing 26/98 atomic regions from SNP 7575 to 8178 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:10,120 DEBUG Processing 145/207 atomic regions from SNP 43291 to 43891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,198 DEBUG Segmenting atomic regions: 2025-01-31 09:41:10,215 DEBUG Processing 44/851 atomic regions from SNP 12941 to 13541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,238 DEBUG Processing 50/833 atomic regions from SNP 14727 to 15327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,275 DEBUG Processing 27/98 atomic regions from SNP 7878 to 8481 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:10,328 DEBUG Processing 146/207 atomic regions from SNP 43591 to 44191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,332 DEBUG Processing 1/996 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,429 DEBUG Processing 45/851 atomic regions from SNP 13241 to 13841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,450 DEBUG Processing 51/833 atomic regions from SNP 15027 to 15627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,485 DEBUG Processing 28/98 atomic regions from SNP 8181 to 8784 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:10,544 DEBUG Processing 147/207 atomic regions from SNP 43891 to 44491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,642 DEBUG Processing 46/851 atomic regions from SNP 13541 to 14141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,659 DEBUG Processing 52/833 atomic regions from SNP 15327 to 15927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,688 DEBUG Processing 29/98 atomic regions from SNP 8484 to 9087 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:10,753 DEBUG Processing 148/207 atomic regions from SNP 44191 to 44791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,852 DEBUG Processing 47/851 atomic regions from SNP 13841 to 14441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,866 DEBUG Processing 53/833 atomic regions from SNP 15627 to 16227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,893 DEBUG Processing 30/98 atomic regions from SNP 8787 to 9390 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:10,960 DEBUG Processing 149/207 atomic regions from SNP 44491 to 45091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,042 DEBUG Processing 2/996 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,063 DEBUG Processing 48/851 atomic regions from SNP 14141 to 14741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,076 DEBUG Processing 54/833 atomic regions from SNP 15927 to 16527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,097 DEBUG Processing 31/98 atomic regions from SNP 9090 to 9693 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:11,171 DEBUG Processing 150/207 atomic regions from SNP 44791 to 45391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,272 DEBUG Processing 49/851 atomic regions from SNP 14441 to 15041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,286 DEBUG Processing 55/833 atomic regions from SNP 16227 to 16827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,298 DEBUG Processing 3/996 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,302 DEBUG Processing 32/98 atomic regions from SNP 9393 to 9996 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:11,378 DEBUG Processing 151/207 atomic regions from SNP 45091 to 45691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,483 DEBUG Processing 50/851 atomic regions from SNP 14741 to 15341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,497 DEBUG Processing 56/833 atomic regions from SNP 16527 to 17127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,507 DEBUG Processing 33/98 atomic regions from SNP 9696 to 10299 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:11,537 DEBUG Processing 4/996 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,589 DEBUG Processing 152/207 atomic regions from SNP 45391 to 45991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,695 DEBUG Processing 51/851 atomic regions from SNP 15041 to 15641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,708 DEBUG Processing 57/833 atomic regions from SNP 16827 to 17427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,717 DEBUG Processing 34/98 atomic regions from SNP 9999 to 10602 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:11,774 DEBUG Processing 5/996 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,797 DEBUG Processing 153/207 atomic regions from SNP 45691 to 46291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,907 DEBUG Processing 52/851 atomic regions from SNP 15341 to 15941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,920 DEBUG Processing 58/833 atomic regions from SNP 17127 to 17727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,923 DEBUG Processing 35/98 atomic regions from SNP 10302 to 10905 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:12,007 DEBUG Processing 154/207 atomic regions from SNP 45991 to 46591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,014 DEBUG Processing 6/996 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,123 DEBUG Processing 53/851 atomic regions from SNP 15641 to 16241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,128 DEBUG Processing 36/98 atomic regions from SNP 10605 to 11208 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:12,135 DEBUG Processing 59/833 atomic regions from SNP 17427 to 18027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,220 DEBUG Processing 155/207 atomic regions from SNP 46291 to 46891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,250 DEBUG Processing 7/996 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,334 DEBUG Processing 37/98 atomic regions from SNP 10908 to 11511 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:12,337 DEBUG Processing 54/851 atomic regions from SNP 15941 to 16541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,347 DEBUG Processing 60/833 atomic regions from SNP 17727 to 18327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,430 DEBUG Processing 156/207 atomic regions from SNP 46591 to 47191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,486 DEBUG Processing 8/996 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,539 DEBUG Processing 38/98 atomic regions from SNP 11211 to 11814 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:12,549 DEBUG Processing 55/851 atomic regions from SNP 16241 to 16841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,558 DEBUG Processing 61/833 atomic regions from SNP 18027 to 18627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,639 DEBUG Processing 157/207 atomic regions from SNP 46891 to 47491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,724 DEBUG Processing 9/996 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,743 DEBUG Processing 39/98 atomic regions from SNP 11514 to 12117 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:12,762 DEBUG Processing 56/851 atomic regions from SNP 16541 to 17141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,767 DEBUG Processing 62/833 atomic regions from SNP 18327 to 18927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,845 DEBUG Processing 158/207 atomic regions from SNP 47191 to 47791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,947 DEBUG Processing 40/98 atomic regions from SNP 11817 to 12420 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:12,960 DEBUG Processing 10/996 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,972 DEBUG Processing 57/851 atomic regions from SNP 16841 to 17441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,976 DEBUG Processing 63/833 atomic regions from SNP 18627 to 19227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,053 DEBUG Processing 159/207 atomic regions from SNP 47491 to 48091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,152 DEBUG Processing 41/98 atomic regions from SNP 12120 to 12723 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:13,187 DEBUG Processing 58/851 atomic regions from SNP 17141 to 17741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,189 DEBUG Processing 64/833 atomic regions from SNP 18927 to 19527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,203 DEBUG Processing 11/996 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,266 DEBUG Processing 160/207 atomic regions from SNP 47791 to 48391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,359 DEBUG Processing 42/98 atomic regions from SNP 12423 to 13026 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:13,399 DEBUG Processing 59/851 atomic regions from SNP 17441 to 18041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,399 DEBUG Processing 65/833 atomic regions from SNP 19227 to 19827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,441 DEBUG Processing 12/996 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,478 DEBUG Processing 161/207 atomic regions from SNP 48091 to 48691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,562 DEBUG Processing 43/98 atomic regions from SNP 12726 to 13329 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:13,609 DEBUG Processing 60/851 atomic regions from SNP 17741 to 18341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,611 DEBUG Processing 66/833 atomic regions from SNP 19527 to 20127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,678 DEBUG Processing 13/996 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,698 DEBUG Processing 162/207 atomic regions from SNP 48391 to 48991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,762 DEBUG Processing 44/98 atomic regions from SNP 13029 to 13632 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:13,818 DEBUG Processing 67/833 atomic regions from SNP 19827 to 20427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,821 DEBUG Processing 61/851 atomic regions from SNP 18041 to 18641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,916 DEBUG Processing 14/996 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,925 DEBUG Processing 163/207 atomic regions from SNP 48691 to 49291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,966 DEBUG Processing 45/98 atomic regions from SNP 13332 to 13935 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:14,027 DEBUG Processing 68/833 atomic regions from SNP 20127 to 20727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,031 DEBUG Processing 62/851 atomic regions from SNP 18341 to 18941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,134 DEBUG Processing 164/207 atomic regions from SNP 48991 to 49591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,152 DEBUG Processing 15/996 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,169 DEBUG Processing 46/98 atomic regions from SNP 13635 to 14238 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:14,235 DEBUG Processing 69/833 atomic regions from SNP 20427 to 21027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,239 DEBUG Processing 63/851 atomic regions from SNP 18641 to 19241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,344 DEBUG Processing 165/207 atomic regions from SNP 49291 to 49891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,374 DEBUG Processing 47/98 atomic regions from SNP 13938 to 14541 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:14,389 DEBUG Processing 16/996 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,447 DEBUG Processing 70/833 atomic regions from SNP 20727 to 21327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,450 DEBUG Processing 64/851 atomic regions from SNP 18941 to 19541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,530 DEBUG Segmenting atomic regions: 2025-01-31 09:41:14,561 DEBUG Processing 166/207 atomic regions from SNP 49591 to 50191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,584 DEBUG Processing 48/98 atomic regions from SNP 14241 to 14844 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:14,634 DEBUG Processing 17/996 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,659 DEBUG Processing 71/833 atomic regions from SNP 21027 to 21627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,666 DEBUG Processing 65/851 atomic regions from SNP 19241 to 19841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,678 DEBUG Processing 1/1111 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,774 DEBUG Processing 167/207 atomic regions from SNP 49891 to 50491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,790 DEBUG Processing 49/98 atomic regions from SNP 14544 to 15147 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:14,872 DEBUG Processing 72/833 atomic regions from SNP 21327 to 21927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,880 DEBUG Processing 66/851 atomic regions from SNP 19541 to 20141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,889 DEBUG Processing 18/996 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,986 DEBUG Processing 168/207 atomic regions from SNP 50191 to 50791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,996 DEBUG Processing 50/98 atomic regions from SNP 14847 to 15450 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:15,082 DEBUG Processing 73/833 atomic regions from SNP 21627 to 22227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,093 DEBUG Processing 67/851 atomic regions from SNP 19841 to 20441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,135 DEBUG Processing 19/996 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,198 DEBUG Processing 169/207 atomic regions from SNP 50491 to 51091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,199 DEBUG Processing 51/98 atomic regions from SNP 15150 to 15753 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:15,295 DEBUG Processing 74/833 atomic regions from SNP 21927 to 22527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,307 DEBUG Processing 68/851 atomic regions from SNP 20141 to 20741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,378 DEBUG Processing 20/996 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,403 DEBUG Processing 52/98 atomic regions from SNP 15453 to 16056 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:15,407 DEBUG Processing 170/207 atomic regions from SNP 50791 to 51391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,498 DEBUG Processing 2/1111 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,507 DEBUG Processing 75/833 atomic regions from SNP 22227 to 22827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,522 DEBUG Processing 69/851 atomic regions from SNP 20441 to 21041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,611 DEBUG Processing 53/98 atomic regions from SNP 15756 to 16359 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:15,622 DEBUG Processing 171/207 atomic regions from SNP 51091 to 51691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,622 DEBUG Processing 21/996 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,727 DEBUG Processing 76/833 atomic regions from SNP 22527 to 23127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,737 DEBUG Processing 70/851 atomic regions from SNP 20741 to 21341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,749 DEBUG Processing 3/1111 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,820 DEBUG Processing 54/98 atomic regions from SNP 16059 to 16662 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:15,837 DEBUG Processing 172/207 atomic regions from SNP 51391 to 51991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,864 DEBUG Processing 22/996 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,941 DEBUG Processing 77/833 atomic regions from SNP 22827 to 23427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,951 DEBUG Processing 71/851 atomic regions from SNP 21041 to 21641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,000 DEBUG Processing 4/1111 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,028 DEBUG Processing 55/98 atomic regions from SNP 16362 to 16965 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:16,051 DEBUG Processing 173/207 atomic regions from SNP 51691 to 52291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,101 DEBUG Processing 23/996 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,154 DEBUG Processing 78/833 atomic regions from SNP 23127 to 23727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,165 DEBUG Processing 72/851 atomic regions from SNP 21341 to 21941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,234 DEBUG Processing 56/98 atomic regions from SNP 16665 to 17268 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:16,246 DEBUG Processing 5/1111 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,264 DEBUG Processing 174/207 atomic regions from SNP 51991 to 52591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,341 DEBUG Processing 24/996 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,369 DEBUG Processing 79/833 atomic regions from SNP 23427 to 24027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,382 DEBUG Processing 73/851 atomic regions from SNP 21641 to 22241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,444 DEBUG Processing 57/98 atomic regions from SNP 16968 to 17571 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:16,480 DEBUG Processing 175/207 atomic regions from SNP 52291 to 52891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,497 DEBUG Processing 6/1111 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,577 DEBUG Processing 25/996 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,583 DEBUG Processing 80/833 atomic regions from SNP 23727 to 24327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,596 DEBUG Processing 74/851 atomic regions from SNP 21941 to 22541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,650 DEBUG Processing 58/98 atomic regions from SNP 17271 to 17874 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:16,693 DEBUG Processing 176/207 atomic regions from SNP 52591 to 53191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,744 DEBUG Processing 7/1111 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,795 DEBUG Processing 81/833 atomic regions from SNP 24027 to 24627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,810 DEBUG Processing 75/851 atomic regions from SNP 22241 to 22841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,817 DEBUG Processing 26/996 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,857 DEBUG Processing 59/98 atomic regions from SNP 17574 to 18177 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:16,906 DEBUG Processing 177/207 atomic regions from SNP 52891 to 53491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,997 DEBUG Processing 8/1111 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,010 DEBUG Processing 82/833 atomic regions from SNP 24327 to 24927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,024 DEBUG Processing 76/851 atomic regions from SNP 22541 to 23141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,056 DEBUG Processing 27/996 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,064 DEBUG Processing 60/98 atomic regions from SNP 17877 to 18480 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:17,118 DEBUG Processing 178/207 atomic regions from SNP 53191 to 53791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,227 DEBUG Processing 83/833 atomic regions from SNP 24627 to 25227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,241 DEBUG Processing 77/851 atomic regions from SNP 22841 to 23441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,248 DEBUG Processing 9/1111 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,275 DEBUG Processing 61/98 atomic regions from SNP 18180 to 18783 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:17,299 DEBUG Processing 28/996 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,329 DEBUG Processing 179/207 atomic regions from SNP 53491 to 54091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,439 DEBUG Processing 84/833 atomic regions from SNP 24927 to 25527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,454 DEBUG Processing 78/851 atomic regions from SNP 23141 to 23741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,482 DEBUG Processing 62/98 atomic regions from SNP 18483 to 19086 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:17,497 DEBUG Processing 10/1111 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,540 DEBUG Processing 29/996 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,541 DEBUG Processing 180/207 atomic regions from SNP 53791 to 54391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,651 DEBUG Processing 85/833 atomic regions from SNP 25227 to 25827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,671 DEBUG Processing 79/851 atomic regions from SNP 23441 to 24041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,693 DEBUG Processing 63/98 atomic regions from SNP 18786 to 19389 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:17,744 DEBUG Processing 11/1111 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,756 DEBUG Processing 181/207 atomic regions from SNP 54091 to 54691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,781 DEBUG Processing 30/996 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,862 DEBUG Processing 86/833 atomic regions from SNP 25527 to 26127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,883 DEBUG Processing 80/851 atomic regions from SNP 23741 to 24341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,897 DEBUG Processing 64/98 atomic regions from SNP 19089 to 19692 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:17,969 DEBUG Processing 182/207 atomic regions from SNP 54391 to 54991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,990 DEBUG Processing 12/1111 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,018 DEBUG Processing 31/996 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,071 DEBUG Processing 87/833 atomic regions from SNP 25827 to 26427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,095 DEBUG Processing 81/851 atomic regions from SNP 24041 to 24641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,103 DEBUG Processing 65/98 atomic regions from SNP 19392 to 19995 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:18,179 DEBUG Processing 183/207 atomic regions from SNP 54691 to 55291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,231 DEBUG Processing 13/1111 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,253 DEBUG Processing 32/996 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,304 DEBUG Processing 66/98 atomic regions from SNP 19695 to 20298 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:18,305 DEBUG Processing 82/851 atomic regions from SNP 24341 to 24941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,306 DEBUG Processing 88/833 atomic regions from SNP 26127 to 26727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,386 DEBUG Processing 184/207 atomic regions from SNP 54991 to 55591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,476 DEBUG Processing 14/1111 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,487 DEBUG Processing 33/996 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,517 DEBUG Processing 89/833 atomic regions from SNP 26427 to 27027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,519 DEBUG Processing 67/98 atomic regions from SNP 19998 to 20601 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:18,521 DEBUG Processing 83/851 atomic regions from SNP 24641 to 25241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,594 DEBUG Processing 185/207 atomic regions from SNP 55291 to 55891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,722 DEBUG Processing 34/996 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,733 DEBUG Processing 15/1111 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,734 DEBUG Processing 68/98 atomic regions from SNP 20301 to 20904 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:18,736 DEBUG Processing 90/833 atomic regions from SNP 26727 to 27327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,741 DEBUG Processing 84/851 atomic regions from SNP 24941 to 25541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,802 DEBUG Processing 186/207 atomic regions from SNP 55591 to 56191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,940 DEBUG Processing 69/98 atomic regions from SNP 20604 to 21207 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:18,947 DEBUG Processing 91/833 atomic regions from SNP 27027 to 27627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,954 DEBUG Processing 85/851 atomic regions from SNP 25241 to 25841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,959 DEBUG Processing 35/996 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,980 DEBUG Processing 16/1111 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,012 DEBUG Processing 187/207 atomic regions from SNP 55891 to 56491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,145 DEBUG Processing 70/98 atomic regions from SNP 20907 to 21510 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:19,156 DEBUG Processing 92/833 atomic regions from SNP 27327 to 27927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,177 DEBUG Processing 86/851 atomic regions from SNP 25541 to 26141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,198 DEBUG Processing 36/996 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,222 DEBUG Processing 188/207 atomic regions from SNP 56191 to 56791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,223 DEBUG Processing 17/1111 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,348 DEBUG Processing 71/98 atomic regions from SNP 21210 to 21813 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:19,365 DEBUG Processing 93/833 atomic regions from SNP 27627 to 28227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,387 DEBUG Processing 87/851 atomic regions from SNP 25841 to 26441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,432 DEBUG Processing 189/207 atomic regions from SNP 56491 to 57091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,435 DEBUG Processing 37/996 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,467 DEBUG Processing 18/1111 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,549 DEBUG Processing 72/98 atomic regions from SNP 21513 to 22116 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:19,571 DEBUG Processing 94/833 atomic regions from SNP 27927 to 28527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,596 DEBUG Processing 88/851 atomic regions from SNP 26141 to 26741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,642 DEBUG Processing 190/207 atomic regions from SNP 56791 to 57391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,672 DEBUG Processing 38/996 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,707 DEBUG Processing 19/1111 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,752 DEBUG Processing 73/98 atomic regions from SNP 21816 to 22419 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:19,779 DEBUG Processing 95/833 atomic regions from SNP 28227 to 28827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,806 DEBUG Processing 89/851 atomic regions from SNP 26441 to 27041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,854 DEBUG Processing 191/207 atomic regions from SNP 57091 to 57691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,909 DEBUG Processing 39/996 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,953 DEBUG Processing 20/1111 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,956 DEBUG Processing 74/98 atomic regions from SNP 22119 to 22722 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:19,986 DEBUG Processing 96/833 atomic regions from SNP 28527 to 29127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,015 DEBUG Processing 90/851 atomic regions from SNP 26741 to 27341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,067 DEBUG Processing 192/207 atomic regions from SNP 57391 to 57991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,152 DEBUG Processing 40/996 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,164 DEBUG Processing 75/98 atomic regions from SNP 22422 to 23025 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:20,197 DEBUG Processing 97/833 atomic regions from SNP 28827 to 29427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,202 DEBUG Processing 21/1111 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,222 DEBUG Processing 91/851 atomic regions from SNP 27041 to 27641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,275 DEBUG Processing 193/207 atomic regions from SNP 57691 to 58291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,369 DEBUG Processing 76/98 atomic regions from SNP 22725 to 23328 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:20,388 DEBUG Processing 41/996 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,405 DEBUG Processing 98/833 atomic regions from SNP 29127 to 29727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,432 DEBUG Processing 92/851 atomic regions from SNP 27341 to 27941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,448 DEBUG Processing 22/1111 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,482 DEBUG Processing 194/207 atomic regions from SNP 57991 to 58591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,573 DEBUG Processing 77/98 atomic regions from SNP 23028 to 23631 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:20,611 DEBUG Processing 99/833 atomic regions from SNP 29427 to 30027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,625 DEBUG Processing 42/996 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,642 DEBUG Processing 93/851 atomic regions from SNP 27641 to 28241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,690 DEBUG Processing 195/207 atomic regions from SNP 58291 to 58891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,690 DEBUG Processing 23/1111 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,775 DEBUG Processing 78/98 atomic regions from SNP 23331 to 23934 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:20,818 DEBUG Processing 100/833 atomic regions from SNP 29727 to 30327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,852 DEBUG Processing 94/851 atomic regions from SNP 27941 to 28541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,861 DEBUG Processing 43/996 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,901 DEBUG Processing 196/207 atomic regions from SNP 58591 to 59191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,933 DEBUG Processing 24/1111 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,001 DEBUG Processing 79/98 atomic regions from SNP 23634 to 24237 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:21,024 DEBUG Processing 101/833 atomic regions from SNP 30027 to 30627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,063 DEBUG Processing 95/851 atomic regions from SNP 28241 to 28841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,100 DEBUG Processing 44/996 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,110 DEBUG Processing 197/207 atomic regions from SNP 58891 to 59491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,176 DEBUG Processing 25/1111 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,222 DEBUG Processing 80/98 atomic regions from SNP 23937 to 24540 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:21,253 DEBUG Processing 102/833 atomic regions from SNP 30327 to 30927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,271 DEBUG Processing 96/851 atomic regions from SNP 28541 to 29141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,321 DEBUG Processing 198/207 atomic regions from SNP 59191 to 59791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,335 DEBUG Processing 45/996 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,419 DEBUG Processing 26/1111 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,422 DEBUG Processing 81/98 atomic regions from SNP 24240 to 24843 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:21,475 DEBUG Processing 103/833 atomic regions from SNP 30627 to 31227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,479 DEBUG Processing 97/851 atomic regions from SNP 28841 to 29441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,536 DEBUG Processing 199/207 atomic regions from SNP 59491 to 60091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,570 DEBUG Processing 46/996 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,624 DEBUG Processing 82/98 atomic regions from SNP 24543 to 25146 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:21,661 DEBUG Processing 27/1111 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,685 DEBUG Processing 104/833 atomic regions from SNP 30927 to 31527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,688 DEBUG Processing 98/851 atomic regions from SNP 29141 to 29741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,746 DEBUG Processing 200/207 atomic regions from SNP 59791 to 60391 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,805 DEBUG Processing 47/996 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,827 DEBUG Processing 83/98 atomic regions from SNP 24846 to 25449 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:21,894 DEBUG Processing 105/833 atomic regions from SNP 31227 to 31827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,899 DEBUG Processing 99/851 atomic regions from SNP 29441 to 30041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,906 DEBUG Processing 28/1111 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,955 DEBUG Processing 201/207 atomic regions from SNP 60091 to 60691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,031 DEBUG Processing 84/98 atomic regions from SNP 25149 to 25752 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:22,040 DEBUG Processing 48/996 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,103 DEBUG Processing 106/833 atomic regions from SNP 31527 to 32127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,111 DEBUG Processing 100/851 atomic regions from SNP 29741 to 30341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,150 DEBUG Processing 29/1111 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,165 DEBUG Processing 202/207 atomic regions from SNP 60391 to 60991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,234 DEBUG Processing 85/98 atomic regions from SNP 25452 to 26055 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:22,274 DEBUG Processing 49/996 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,312 DEBUG Processing 107/833 atomic regions from SNP 31827 to 32427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,322 DEBUG Processing 101/851 atomic regions from SNP 30041 to 30641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,388 DEBUG Processing 203/207 atomic regions from SNP 60691 to 61291 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,394 DEBUG Processing 30/1111 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,438 DEBUG Processing 86/98 atomic regions from SNP 25755 to 26358 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:22,510 DEBUG Processing 50/996 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,537 DEBUG Processing 102/851 atomic regions from SNP 30341 to 30941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,552 DEBUG Processing 108/833 atomic regions from SNP 32127 to 32727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,629 DEBUG Processing 204/207 atomic regions from SNP 60991 to 61591 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,640 DEBUG Processing 31/1111 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,644 DEBUG Processing 87/98 atomic regions from SNP 26058 to 26661 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:22,748 DEBUG Processing 51/996 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,750 DEBUG Processing 103/851 atomic regions from SNP 30641 to 31241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,787 DEBUG Processing 109/833 atomic regions from SNP 32427 to 33027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,849 DEBUG Processing 88/98 atomic regions from SNP 26361 to 26964 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:22,858 DEBUG Processing 205/207 atomic regions from SNP 61291 to 61891 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,884 DEBUG Processing 32/1111 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,958 DEBUG Processing 104/851 atomic regions from SNP 30941 to 31541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,986 DEBUG Processing 52/996 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,017 DEBUG Processing 110/833 atomic regions from SNP 32727 to 33327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,053 DEBUG Processing 89/98 atomic regions from SNP 26664 to 27267 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:23,070 DEBUG Processing 206/207 atomic regions from SNP 61591 to 62191 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:23,127 DEBUG Processing 33/1111 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,166 DEBUG Processing 105/851 atomic regions from SNP 31241 to 31841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,221 DEBUG Processing 53/996 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,258 DEBUG Processing 111/833 atomic regions from SNP 33027 to 33627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,259 DEBUG Processing 90/98 atomic regions from SNP 26967 to 27570 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:23,279 DEBUG Processing 207/207 atomic regions from SNP 61891 to 62491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:23,371 DEBUG Processing 34/1111 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,373 DEBUG Processing 106/851 atomic regions from SNP 31541 to 32141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,396 DEBUG Unique SNPs positions in subchromosome 1: 62492 2025-01-31 09:41:23,458 DEBUG Processing 54/996 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,464 DEBUG Processing 91/98 atomic regions from SNP 27270 to 27873 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:23,482 DEBUG Subchromosome time: 51.67338807100896, subchromosome SNPs: 62492 2025-01-31 09:41:23,483 DEBUG Processing 112/833 atomic regions from SNP 33327 to 33927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,528 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:23,583 DEBUG Processing 107/851 atomic regions from SNP 31841 to 32441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,614 DEBUG Processing 35/1111 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,670 DEBUG Processing 92/98 atomic regions from SNP 27573 to 28176 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:23,688 DEBUG Processing 113/833 atomic regions from SNP 33627 to 34227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,696 DEBUG Processing 55/996 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,792 DEBUG Processing 108/851 atomic regions from SNP 32141 to 32741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,859 DEBUG Processing 36/1111 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,875 DEBUG Processing 93/98 atomic regions from SNP 27876 to 28479 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:23,895 DEBUG Processing 114/833 atomic regions from SNP 33927 to 34527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,932 DEBUG Processing 56/996 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,999 DEBUG Processing 109/851 atomic regions from SNP 32441 to 33041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,076 DEBUG Processing 94/98 atomic regions from SNP 28179 to 28782 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:24,103 DEBUG Processing 37/1111 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,109 DEBUG Processing 115/833 atomic regions from SNP 34227 to 34827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,167 DEBUG Processing 57/996 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,209 DEBUG Processing 110/851 atomic regions from SNP 32741 to 33341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,278 DEBUG Processing 95/98 atomic regions from SNP 28482 to 29085 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:24,324 DEBUG Processing 116/833 atomic regions from SNP 34527 to 35127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,348 DEBUG Processing 38/1111 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,401 DEBUG Processing 58/996 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,417 DEBUG Processing 111/851 atomic regions from SNP 33041 to 33641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,479 DEBUG Processing 96/98 atomic regions from SNP 28785 to 29388 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:24,532 DEBUG Processing 117/833 atomic regions from SNP 34827 to 35427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,591 DEBUG Processing 39/1111 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,626 DEBUG Processing 112/851 atomic regions from SNP 33341 to 33941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,634 DEBUG Processing 59/996 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,681 DEBUG Processing 97/98 atomic regions from SNP 29088 to 29690 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:24,739 DEBUG Processing 118/833 atomic regions from SNP 35127 to 35727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,834 DEBUG Processing 40/1111 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,835 DEBUG Processing 113/851 atomic regions from SNP 33641 to 34241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,872 DEBUG Processing 60/996 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,883 DEBUG Processing 98/98 atomic regions from SNP 29390 to 29992 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:24,946 DEBUG Processing 119/833 atomic regions from SNP 35427 to 36027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,988 DEBUG Unique SNPs positions in subchromosome 4: 29993 2025-01-31 09:41:25,021 DEBUG Subchromosome time: 23.69803754799068, subchromosome SNPs: 29993 2025-01-31 09:41:25,045 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:25,050 DEBUG Processing 114/851 atomic regions from SNP 33941 to 34541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,084 DEBUG Processing 41/1111 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,107 DEBUG Processing 61/996 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,153 DEBUG Processing 120/833 atomic regions from SNP 35727 to 36327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,260 DEBUG Processing 115/851 atomic regions from SNP 34241 to 34841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,330 DEBUG Processing 42/1111 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,341 DEBUG Processing 62/996 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,361 DEBUG Processing 121/833 atomic regions from SNP 36027 to 36627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,465 DEBUG Processing 116/851 atomic regions from SNP 34541 to 35141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,567 DEBUG Processing 122/833 atomic regions from SNP 36327 to 36927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,574 DEBUG Processing 63/996 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,574 DEBUG Processing 43/1111 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,669 DEBUG Processing 117/851 atomic regions from SNP 34841 to 35441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,774 DEBUG Processing 123/833 atomic regions from SNP 36627 to 37227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,809 DEBUG Processing 64/996 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,819 DEBUG Processing 44/1111 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,875 DEBUG Processing 118/851 atomic regions from SNP 35141 to 35741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,980 DEBUG Processing 124/833 atomic regions from SNP 36927 to 37527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,044 DEBUG Processing 65/996 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,064 DEBUG Processing 45/1111 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,086 DEBUG Processing 119/851 atomic regions from SNP 35441 to 36041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,184 DEBUG Processing 125/833 atomic regions from SNP 37227 to 37827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,278 DEBUG Processing 66/996 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,294 DEBUG Processing 120/851 atomic regions from SNP 35741 to 36341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,307 DEBUG Processing 46/1111 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,386 DEBUG Processing 126/833 atomic regions from SNP 37527 to 38127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,504 DEBUG Processing 121/851 atomic regions from SNP 36041 to 36641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,509 DEBUG Processing 67/996 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,550 DEBUG Processing 47/1111 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,589 DEBUG Processing 127/833 atomic regions from SNP 37827 to 38427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,712 DEBUG Processing 122/851 atomic regions from SNP 36341 to 36941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,743 DEBUG Processing 68/996 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,792 DEBUG Processing 48/1111 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,795 DEBUG Processing 128/833 atomic regions from SNP 38127 to 38727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,927 DEBUG Processing 123/851 atomic regions from SNP 36641 to 37241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,982 DEBUG Processing 69/996 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,007 DEBUG Processing 129/833 atomic regions from SNP 38427 to 39027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,039 DEBUG Processing 49/1111 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,135 DEBUG Processing 124/851 atomic regions from SNP 36941 to 37541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,217 DEBUG Processing 70/996 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,222 DEBUG Processing 130/833 atomic regions from SNP 38727 to 39327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,280 DEBUG Processing 50/1111 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,341 DEBUG Processing 125/851 atomic regions from SNP 37241 to 37841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,427 DEBUG Processing 131/833 atomic regions from SNP 39027 to 39627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,449 DEBUG Processing 71/996 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,523 DEBUG Processing 51/1111 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,548 DEBUG Processing 126/851 atomic regions from SNP 37541 to 38141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,628 DEBUG Processing 132/833 atomic regions from SNP 39327 to 39927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,683 DEBUG Processing 72/996 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,754 DEBUG Processing 127/851 atomic regions from SNP 37841 to 38441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,765 DEBUG Processing 52/1111 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,831 DEBUG Processing 133/833 atomic regions from SNP 39627 to 40227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,915 DEBUG Processing 73/996 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,963 DEBUG Processing 128/851 atomic regions from SNP 38141 to 38741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,005 DEBUG Processing 53/1111 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,033 DEBUG Processing 134/833 atomic regions from SNP 39927 to 40527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,153 DEBUG Processing 74/996 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,174 DEBUG Processing 129/851 atomic regions from SNP 38441 to 39041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,241 DEBUG Processing 135/833 atomic regions from SNP 40227 to 40827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,251 DEBUG Processing 54/1111 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,378 DEBUG Processing 130/851 atomic regions from SNP 38741 to 39341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,386 DEBUG Processing 75/996 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,446 DEBUG Processing 136/833 atomic regions from SNP 40527 to 41127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,491 DEBUG Processing 55/1111 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,585 DEBUG Processing 131/851 atomic regions from SNP 39041 to 39641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,622 DEBUG Processing 76/996 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,654 DEBUG Processing 137/833 atomic regions from SNP 40827 to 41427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,739 DEBUG Processing 56/1111 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,794 DEBUG Processing 132/851 atomic regions from SNP 39341 to 39941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,855 DEBUG Processing 77/996 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,860 DEBUG Processing 138/833 atomic regions from SNP 41127 to 41727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,976 DEBUG Processing 57/1111 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,999 DEBUG Processing 133/851 atomic regions from SNP 39641 to 40241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,063 DEBUG Processing 139/833 atomic regions from SNP 41427 to 42027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,091 DEBUG Processing 78/996 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,204 DEBUG Processing 134/851 atomic regions from SNP 39941 to 40541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,216 DEBUG Processing 58/1111 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,266 DEBUG Processing 140/833 atomic regions from SNP 41727 to 42327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,322 DEBUG Processing 79/996 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,435 DEBUG Processing 135/851 atomic regions from SNP 40241 to 40841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,454 DEBUG Processing 59/1111 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,469 DEBUG Processing 141/833 atomic regions from SNP 42027 to 42627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,556 DEBUG Processing 80/996 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,644 DEBUG Processing 136/851 atomic regions from SNP 40541 to 41141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,677 DEBUG Processing 142/833 atomic regions from SNP 42327 to 42927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,694 DEBUG Processing 60/1111 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,787 DEBUG Processing 81/996 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,851 DEBUG Processing 137/851 atomic regions from SNP 40841 to 41441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,888 DEBUG Processing 143/833 atomic regions from SNP 42627 to 43227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,932 DEBUG Processing 61/1111 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,020 DEBUG Processing 82/996 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,058 DEBUG Processing 138/851 atomic regions from SNP 41141 to 41741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,112 DEBUG Processing 144/833 atomic regions from SNP 42927 to 43527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,168 DEBUG Processing 62/1111 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,251 DEBUG Processing 83/996 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,266 DEBUG Processing 139/851 atomic regions from SNP 41441 to 42041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,322 DEBUG Processing 145/833 atomic regions from SNP 43227 to 43827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,405 DEBUG Processing 63/1111 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,472 DEBUG Processing 140/851 atomic regions from SNP 41741 to 42341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,487 DEBUG Processing 84/996 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,553 DEBUG Processing 146/833 atomic regions from SNP 43527 to 44127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,643 DEBUG Processing 64/1111 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,678 DEBUG Processing 141/851 atomic regions from SNP 42041 to 42641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,719 DEBUG Processing 85/996 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,783 DEBUG Processing 147/833 atomic regions from SNP 43827 to 44427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,881 DEBUG Processing 65/1111 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,884 DEBUG Processing 142/851 atomic regions from SNP 42341 to 42941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,953 DEBUG Processing 86/996 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,021 DEBUG Processing 148/833 atomic regions from SNP 44127 to 44727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,094 DEBUG Processing 143/851 atomic regions from SNP 42641 to 43241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,123 DEBUG Processing 66/1111 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,209 DEBUG Processing 87/996 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,229 DEBUG Processing 149/833 atomic regions from SNP 44427 to 45027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,300 DEBUG Processing 144/851 atomic regions from SNP 42941 to 43541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,361 DEBUG Processing 67/1111 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,432 DEBUG Processing 150/833 atomic regions from SNP 44727 to 45327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,458 DEBUG Processing 88/996 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,507 DEBUG Processing 145/851 atomic regions from SNP 43241 to 43841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,603 DEBUG Processing 68/1111 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,634 DEBUG Processing 151/833 atomic regions from SNP 45027 to 45627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,690 DEBUG Processing 89/996 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,724 DEBUG Processing 146/851 atomic regions from SNP 43541 to 44141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,834 DEBUG Processing 152/833 atomic regions from SNP 45327 to 45927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,842 DEBUG Processing 69/1111 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,926 DEBUG Processing 90/996 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,931 DEBUG Processing 147/851 atomic regions from SNP 43841 to 44441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,043 DEBUG Processing 153/833 atomic regions from SNP 45627 to 46227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,083 DEBUG Processing 70/1111 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,141 DEBUG Processing 148/851 atomic regions from SNP 44141 to 44741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,178 DEBUG Processing 91/996 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,258 DEBUG Processing 154/833 atomic regions from SNP 45927 to 46527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,321 DEBUG Processing 71/1111 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,347 DEBUG Processing 149/851 atomic regions from SNP 44441 to 45041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,417 DEBUG Processing 92/996 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,460 DEBUG Processing 155/833 atomic regions from SNP 46227 to 46827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,552 DEBUG Processing 150/851 atomic regions from SNP 44741 to 45341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,560 DEBUG Processing 72/1111 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,649 DEBUG Processing 93/996 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,662 DEBUG Processing 156/833 atomic regions from SNP 46527 to 47127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,757 DEBUG Processing 151/851 atomic regions from SNP 45041 to 45641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,799 DEBUG Processing 73/1111 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,864 DEBUG Processing 157/833 atomic regions from SNP 46827 to 47427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,884 DEBUG Processing 94/996 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,961 DEBUG Processing 152/851 atomic regions from SNP 45341 to 45941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,038 DEBUG Processing 74/1111 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,070 DEBUG Processing 158/833 atomic regions from SNP 47127 to 47727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,115 DEBUG Processing 95/996 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,167 DEBUG Processing 153/851 atomic regions from SNP 45641 to 46241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,272 DEBUG Processing 159/833 atomic regions from SNP 47427 to 48027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,277 DEBUG Processing 75/1111 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,350 DEBUG Processing 96/996 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,372 DEBUG Processing 154/851 atomic regions from SNP 45941 to 46541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,476 DEBUG Processing 160/833 atomic regions from SNP 47727 to 48327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,516 DEBUG Processing 76/1111 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,578 DEBUG Processing 155/851 atomic regions from SNP 46241 to 46841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,582 DEBUG Processing 97/996 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,688 DEBUG Processing 161/833 atomic regions from SNP 48027 to 48627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,756 DEBUG Processing 77/1111 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,795 DEBUG Processing 156/851 atomic regions from SNP 46541 to 47141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,818 DEBUG Processing 98/996 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,898 DEBUG Processing 162/833 atomic regions from SNP 48327 to 48927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,996 DEBUG Processing 78/1111 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,005 DEBUG Processing 157/851 atomic regions from SNP 46841 to 47441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,051 DEBUG Processing 99/996 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,130 DEBUG Processing 163/833 atomic regions from SNP 48627 to 49227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,213 DEBUG Processing 158/851 atomic regions from SNP 47141 to 47741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,235 DEBUG Processing 79/1111 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,286 DEBUG Processing 100/996 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,337 DEBUG Processing 164/833 atomic regions from SNP 48927 to 49527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,419 DEBUG Processing 159/851 atomic regions from SNP 47441 to 48041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,474 DEBUG Processing 80/1111 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,517 DEBUG Processing 101/996 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,541 DEBUG Processing 165/833 atomic regions from SNP 49227 to 49827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,623 DEBUG Processing 160/851 atomic regions from SNP 47741 to 48341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,715 DEBUG Processing 81/1111 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,751 DEBUG Processing 102/996 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,772 DEBUG Processing 166/833 atomic regions from SNP 49527 to 50127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,827 DEBUG Processing 161/851 atomic regions from SNP 48041 to 48641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,953 DEBUG Processing 82/1111 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,982 DEBUG Processing 103/996 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,992 DEBUG Processing 167/833 atomic regions from SNP 49827 to 50427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,033 DEBUG Processing 162/851 atomic regions from SNP 48341 to 48941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,192 DEBUG Processing 83/1111 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,208 DEBUG Processing 168/833 atomic regions from SNP 50127 to 50727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,216 DEBUG Processing 104/996 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,238 DEBUG Processing 163/851 atomic regions from SNP 48641 to 49241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,432 DEBUG Processing 84/1111 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,446 DEBUG Processing 169/833 atomic regions from SNP 50427 to 51027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,447 DEBUG Processing 164/851 atomic regions from SNP 48941 to 49541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,449 DEBUG Processing 105/996 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,658 DEBUG Processing 165/851 atomic regions from SNP 49241 to 49841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,668 DEBUG Processing 170/833 atomic regions from SNP 50727 to 51327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,677 DEBUG Processing 85/1111 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,688 DEBUG Processing 106/996 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,867 DEBUG Processing 166/851 atomic regions from SNP 49541 to 50141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,895 DEBUG Processing 171/833 atomic regions from SNP 51027 to 51627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,917 DEBUG Processing 86/1111 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,921 DEBUG Processing 107/996 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,074 DEBUG Processing 167/851 atomic regions from SNP 49841 to 50441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,113 DEBUG Processing 172/833 atomic regions from SNP 51327 to 51927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,155 DEBUG Processing 108/996 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,156 DEBUG Processing 87/1111 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,281 DEBUG Processing 168/851 atomic regions from SNP 50141 to 50741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,319 DEBUG Processing 173/833 atomic regions from SNP 51627 to 52227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,389 DEBUG Processing 109/996 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,397 DEBUG Processing 88/1111 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,487 DEBUG Processing 169/851 atomic regions from SNP 50441 to 51041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,525 DEBUG Processing 174/833 atomic regions from SNP 51927 to 52527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,625 DEBUG Processing 110/996 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,636 DEBUG Processing 89/1111 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,695 DEBUG Processing 170/851 atomic regions from SNP 50741 to 51341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,743 DEBUG Processing 175/833 atomic regions from SNP 52227 to 52827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,857 DEBUG Processing 111/996 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,880 DEBUG Processing 90/1111 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,905 DEBUG Processing 171/851 atomic regions from SNP 51041 to 51641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,951 DEBUG Processing 176/833 atomic regions from SNP 52527 to 53127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,091 DEBUG Processing 112/996 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,116 DEBUG Processing 172/851 atomic regions from SNP 51341 to 51941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,124 DEBUG Processing 91/1111 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,158 DEBUG Processing 177/833 atomic regions from SNP 52827 to 53427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,327 DEBUG Processing 113/996 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,331 DEBUG Processing 173/851 atomic regions from SNP 51641 to 52241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,369 DEBUG Processing 178/833 atomic regions from SNP 53127 to 53727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,371 DEBUG Processing 92/1111 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,414 DEBUG Segmenting atomic regions: 2025-01-31 09:41:37,514 DEBUG Processing 1/352 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:37,540 DEBUG Processing 174/851 atomic regions from SNP 51941 to 52541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,562 DEBUG Processing 114/996 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,576 DEBUG Processing 179/833 atomic regions from SNP 53427 to 54027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,614 DEBUG Processing 93/1111 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,721 DEBUG Processing 2/352 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:37,752 DEBUG Processing 175/851 atomic regions from SNP 52241 to 52841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,791 DEBUG Processing 180/833 atomic regions from SNP 53727 to 54327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,800 DEBUG Processing 115/996 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,857 DEBUG Processing 94/1111 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,922 DEBUG Processing 3/352 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:37,960 DEBUG Processing 176/851 atomic regions from SNP 52541 to 53141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,024 DEBUG Processing 181/833 atomic regions from SNP 54027 to 54627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,035 DEBUG Processing 116/996 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,101 DEBUG Processing 95/1111 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,120 DEBUG Processing 4/352 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:38,168 DEBUG Processing 177/851 atomic regions from SNP 52841 to 53441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,252 DEBUG Processing 182/833 atomic regions from SNP 54327 to 54927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,272 DEBUG Processing 117/996 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,324 DEBUG Processing 5/352 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:38,351 DEBUG Processing 96/1111 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,382 DEBUG Processing 178/851 atomic regions from SNP 53141 to 53741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,472 DEBUG Processing 183/833 atomic regions from SNP 54627 to 55227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,511 DEBUG Processing 118/996 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,528 DEBUG Processing 6/352 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:38,594 DEBUG Processing 179/851 atomic regions from SNP 53441 to 54041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,596 DEBUG Processing 97/1111 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,677 DEBUG Processing 184/833 atomic regions from SNP 54927 to 55527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,731 DEBUG Processing 7/352 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:38,745 DEBUG Processing 119/996 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,812 DEBUG Processing 180/851 atomic regions from SNP 53741 to 54341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,846 DEBUG Processing 98/1111 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,886 DEBUG Processing 185/833 atomic regions from SNP 55227 to 55827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,932 DEBUG Processing 8/352 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:38,982 DEBUG Processing 120/996 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,020 DEBUG Processing 181/851 atomic regions from SNP 54041 to 54641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,088 DEBUG Processing 99/1111 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,090 DEBUG Processing 186/833 atomic regions from SNP 55527 to 56127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,136 DEBUG Processing 9/352 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:39,218 DEBUG Processing 121/996 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,230 DEBUG Processing 182/851 atomic regions from SNP 54341 to 54941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,299 DEBUG Processing 187/833 atomic regions from SNP 55827 to 56427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,332 DEBUG Processing 100/1111 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,342 DEBUG Processing 10/352 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:39,438 DEBUG Processing 183/851 atomic regions from SNP 54641 to 55241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,456 DEBUG Processing 122/996 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,506 DEBUG Processing 188/833 atomic regions from SNP 56127 to 56727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,545 DEBUG Processing 11/352 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:39,573 DEBUG Processing 101/1111 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,645 DEBUG Processing 184/851 atomic regions from SNP 54941 to 55541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,690 DEBUG Processing 123/996 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,713 DEBUG Processing 189/833 atomic regions from SNP 56427 to 57027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,747 DEBUG Processing 12/352 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:39,816 DEBUG Processing 102/1111 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,854 DEBUG Processing 185/851 atomic regions from SNP 55241 to 55841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,919 DEBUG Processing 190/833 atomic regions from SNP 56727 to 57327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,927 DEBUG Processing 124/996 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,950 DEBUG Processing 13/352 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:40,063 DEBUG Processing 103/1111 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,069 DEBUG Processing 186/851 atomic regions from SNP 55541 to 56141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,132 DEBUG Processing 191/833 atomic regions from SNP 57027 to 57627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,155 DEBUG Processing 14/352 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:40,169 DEBUG Processing 125/996 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,277 DEBUG Processing 187/851 atomic regions from SNP 55841 to 56441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,306 DEBUG Processing 104/1111 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,338 DEBUG Processing 192/833 atomic regions from SNP 57327 to 57927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,358 DEBUG Processing 15/352 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:40,429 DEBUG Processing 126/996 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,488 DEBUG Processing 188/851 atomic regions from SNP 56141 to 56741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,550 DEBUG Processing 105/1111 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,550 DEBUG Processing 193/833 atomic regions from SNP 57627 to 58227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,562 DEBUG Processing 16/352 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:40,692 DEBUG Processing 127/996 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,699 DEBUG Processing 189/851 atomic regions from SNP 56441 to 57041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,762 DEBUG Processing 194/833 atomic regions from SNP 57927 to 58527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,765 DEBUG Processing 17/352 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:40,796 DEBUG Processing 106/1111 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,907 DEBUG Processing 190/851 atomic regions from SNP 56741 to 57341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,961 DEBUG Processing 128/996 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,968 DEBUG Processing 18/352 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:40,971 DEBUG Processing 195/833 atomic regions from SNP 58227 to 58827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,038 DEBUG Processing 107/1111 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,117 DEBUG Processing 191/851 atomic regions from SNP 57041 to 57641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,172 DEBUG Processing 19/352 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:41,178 DEBUG Processing 196/833 atomic regions from SNP 58527 to 59127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,222 DEBUG Processing 129/996 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,280 DEBUG Processing 108/1111 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,325 DEBUG Processing 192/851 atomic regions from SNP 57341 to 57941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,375 DEBUG Processing 20/352 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:41,384 DEBUG Processing 197/833 atomic regions from SNP 58827 to 59427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,470 DEBUG Processing 130/996 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,521 DEBUG Processing 109/1111 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,534 DEBUG Processing 193/851 atomic regions from SNP 57641 to 58241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,577 DEBUG Processing 21/352 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:41,587 DEBUG Processing 198/833 atomic regions from SNP 59127 to 59727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,703 DEBUG Processing 131/996 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,747 DEBUG Processing 194/851 atomic regions from SNP 57941 to 58541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,763 DEBUG Processing 110/1111 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,779 DEBUG Processing 22/352 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:41,795 DEBUG Processing 199/833 atomic regions from SNP 59427 to 60027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,941 DEBUG Processing 132/996 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,961 DEBUG Processing 195/851 atomic regions from SNP 58241 to 58841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,985 DEBUG Processing 23/352 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:42,006 DEBUG Processing 200/833 atomic regions from SNP 59727 to 60327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,012 DEBUG Processing 111/1111 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,174 DEBUG Processing 196/851 atomic regions from SNP 58541 to 59141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,187 DEBUG Processing 24/352 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:42,205 DEBUG Processing 133/996 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,217 DEBUG Processing 201/833 atomic regions from SNP 60027 to 60627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,256 DEBUG Processing 112/1111 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,386 DEBUG Processing 197/851 atomic regions from SNP 58841 to 59441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,390 DEBUG Processing 25/352 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:42,427 DEBUG Processing 202/833 atomic regions from SNP 60327 to 60927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,464 DEBUG Processing 134/996 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,501 DEBUG Processing 113/1111 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,593 DEBUG Processing 26/352 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:42,596 DEBUG Processing 198/851 atomic regions from SNP 59141 to 59741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,635 DEBUG Processing 203/833 atomic regions from SNP 60627 to 61227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,717 DEBUG Processing 135/996 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,743 DEBUG Processing 114/1111 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,795 DEBUG Processing 27/352 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:42,808 DEBUG Processing 199/851 atomic regions from SNP 59441 to 60041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,841 DEBUG Processing 204/833 atomic regions from SNP 60927 to 61527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,964 DEBUG Processing 136/996 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,987 DEBUG Processing 115/1111 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,998 DEBUG Processing 28/352 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:43,020 DEBUG Processing 200/851 atomic regions from SNP 59741 to 60341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,047 DEBUG Processing 205/833 atomic regions from SNP 61227 to 61827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,199 DEBUG Processing 137/996 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,205 DEBUG Processing 29/352 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:43,236 DEBUG Processing 116/1111 atomic regions from SNP 34615 to 35215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,236 DEBUG Processing 201/851 atomic regions from SNP 60041 to 60641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,259 DEBUG Processing 206/833 atomic regions from SNP 61527 to 62127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,409 DEBUG Processing 30/352 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:43,451 DEBUG Processing 202/851 atomic regions from SNP 60341 to 60941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,453 DEBUG Processing 138/996 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,466 DEBUG Processing 207/833 atomic regions from SNP 61827 to 62427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,481 DEBUG Processing 117/1111 atomic regions from SNP 34915 to 35515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,609 DEBUG Processing 31/352 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:43,663 DEBUG Processing 203/851 atomic regions from SNP 60641 to 61241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,673 DEBUG Processing 208/833 atomic regions from SNP 62127 to 62727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,710 DEBUG Processing 139/996 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,725 DEBUG Processing 118/1111 atomic regions from SNP 35215 to 35815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,807 DEBUG Processing 32/352 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:43,871 DEBUG Processing 204/851 atomic regions from SNP 60941 to 61541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,882 DEBUG Processing 209/833 atomic regions from SNP 62427 to 63027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,944 DEBUG Processing 140/996 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,968 DEBUG Processing 119/1111 atomic regions from SNP 35515 to 36115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,008 DEBUG Processing 33/352 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:44,081 DEBUG Processing 205/851 atomic regions from SNP 61241 to 61841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,090 DEBUG Processing 210/833 atomic regions from SNP 62727 to 63327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,194 DEBUG Processing 141/996 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,207 DEBUG Processing 120/1111 atomic regions from SNP 35815 to 36415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,212 DEBUG Processing 34/352 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:44,291 DEBUG Processing 206/851 atomic regions from SNP 61541 to 62141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,298 DEBUG Processing 211/833 atomic regions from SNP 63027 to 63627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,417 DEBUG Processing 35/352 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:44,450 DEBUG Processing 142/996 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,451 DEBUG Processing 121/1111 atomic regions from SNP 36115 to 36715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,500 DEBUG Processing 207/851 atomic regions from SNP 61841 to 62441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,503 DEBUG Processing 212/833 atomic regions from SNP 63327 to 63927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,618 DEBUG Processing 36/352 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:44,694 DEBUG Processing 122/1111 atomic regions from SNP 36415 to 37015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,699 DEBUG Processing 143/996 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,711 DEBUG Processing 213/833 atomic regions from SNP 63627 to 64227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,711 DEBUG Processing 208/851 atomic regions from SNP 62141 to 62741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,818 DEBUG Processing 37/352 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:44,922 DEBUG Processing 214/833 atomic regions from SNP 63927 to 64527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,923 DEBUG Processing 209/851 atomic regions from SNP 62441 to 63041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,938 DEBUG Processing 144/996 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,941 DEBUG Processing 123/1111 atomic regions from SNP 36715 to 37315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,018 DEBUG Processing 38/352 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:45,132 DEBUG Processing 215/833 atomic regions from SNP 64227 to 64827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,134 DEBUG Processing 210/851 atomic regions from SNP 62741 to 63341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,179 DEBUG Processing 145/996 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,185 DEBUG Processing 124/1111 atomic regions from SNP 37015 to 37615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,221 DEBUG Processing 39/352 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:45,295 DEBUG Segmenting atomic regions: 2025-01-31 09:41:45,345 DEBUG Processing 216/833 atomic regions from SNP 64527 to 65127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,350 DEBUG Processing 211/851 atomic regions from SNP 63041 to 63641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,406 DEBUG Processing 1/630 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,421 DEBUG Processing 146/996 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,427 DEBUG Processing 40/352 atomic regions from SNP 11739 to 12339 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:45,439 DEBUG Processing 125/1111 atomic regions from SNP 37315 to 37915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,553 DEBUG Processing 217/833 atomic regions from SNP 64827 to 65427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,562 DEBUG Processing 212/851 atomic regions from SNP 63341 to 63941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,635 DEBUG Processing 41/352 atomic regions from SNP 12039 to 12639 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:45,645 DEBUG Processing 2/630 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,663 DEBUG Processing 147/996 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,683 DEBUG Processing 126/1111 atomic regions from SNP 37615 to 38215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,766 DEBUG Processing 218/833 atomic regions from SNP 65127 to 65727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,776 DEBUG Processing 213/851 atomic regions from SNP 63641 to 64241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,841 DEBUG Processing 42/352 atomic regions from SNP 12339 to 12939 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:45,883 DEBUG Processing 3/630 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,904 DEBUG Processing 148/996 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,930 DEBUG Processing 127/1111 atomic regions from SNP 37915 to 38515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,973 DEBUG Processing 219/833 atomic regions from SNP 65427 to 66027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,984 DEBUG Processing 214/851 atomic regions from SNP 63941 to 64541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,042 DEBUG Processing 43/352 atomic regions from SNP 12639 to 13239 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:46,096 DEBUG Processing 4/630 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,166 DEBUG Processing 149/996 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,173 DEBUG Processing 128/1111 atomic regions from SNP 38215 to 38815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,181 DEBUG Processing 220/833 atomic regions from SNP 65727 to 66327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,195 DEBUG Processing 215/851 atomic regions from SNP 64241 to 64841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,245 DEBUG Processing 44/352 atomic regions from SNP 12939 to 13539 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:46,328 DEBUG Processing 5/630 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,399 DEBUG Processing 221/833 atomic regions from SNP 66027 to 66627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,411 DEBUG Processing 216/851 atomic regions from SNP 64541 to 65141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,422 DEBUG Processing 129/1111 atomic regions from SNP 38515 to 39115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,430 DEBUG Processing 150/996 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,449 DEBUG Processing 45/352 atomic regions from SNP 13239 to 13839 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:46,562 DEBUG Processing 6/630 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,611 DEBUG Processing 222/833 atomic regions from SNP 66327 to 66927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,623 DEBUG Processing 217/851 atomic regions from SNP 64841 to 65441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,650 DEBUG Processing 46/352 atomic regions from SNP 13539 to 14139 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:46,665 DEBUG Processing 130/1111 atomic regions from SNP 38815 to 39415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,671 DEBUG Processing 151/996 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,772 DEBUG Processing 7/630 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,820 DEBUG Processing 223/833 atomic regions from SNP 66627 to 67227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,836 DEBUG Processing 218/851 atomic regions from SNP 65141 to 65741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,853 DEBUG Processing 47/352 atomic regions from SNP 13839 to 14439 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:46,911 DEBUG Processing 131/1111 atomic regions from SNP 39115 to 39715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,912 DEBUG Processing 152/996 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,985 DEBUG Processing 8/630 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,033 DEBUG Processing 224/833 atomic regions from SNP 66927 to 67527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,054 DEBUG Processing 219/851 atomic regions from SNP 65441 to 66041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,059 DEBUG Processing 48/352 atomic regions from SNP 14139 to 14739 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:47,145 DEBUG Processing 153/996 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,151 DEBUG Processing 132/1111 atomic regions from SNP 39415 to 40015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,206 DEBUG Processing 9/630 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,240 DEBUG Processing 225/833 atomic regions from SNP 67227 to 67827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,262 DEBUG Processing 49/352 atomic regions from SNP 14439 to 15039 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:47,266 DEBUG Processing 220/851 atomic regions from SNP 65741 to 66341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,380 DEBUG Processing 154/996 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,394 DEBUG Processing 133/1111 atomic regions from SNP 39715 to 40315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,425 DEBUG Processing 10/630 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,449 DEBUG Processing 226/833 atomic regions from SNP 67527 to 68127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,463 DEBUG Processing 50/352 atomic regions from SNP 14739 to 15339 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:47,476 DEBUG Processing 221/851 atomic regions from SNP 66041 to 66641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,621 DEBUG Processing 155/996 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,635 DEBUG Processing 11/630 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,639 DEBUG Processing 134/1111 atomic regions from SNP 40015 to 40615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,657 DEBUG Processing 227/833 atomic regions from SNP 67827 to 68427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,665 DEBUG Processing 51/352 atomic regions from SNP 15039 to 15639 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:47,686 DEBUG Processing 222/851 atomic regions from SNP 66341 to 66941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,849 DEBUG Processing 12/630 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,866 DEBUG Processing 228/833 atomic regions from SNP 68127 to 68727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,867 DEBUG Processing 52/352 atomic regions from SNP 15339 to 15939 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:47,873 DEBUG Processing 156/996 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,886 DEBUG Processing 135/1111 atomic regions from SNP 40315 to 40915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,896 DEBUG Processing 223/851 atomic regions from SNP 66641 to 67241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,064 DEBUG Processing 13/630 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,072 DEBUG Processing 53/352 atomic regions from SNP 15639 to 16239 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:48,080 DEBUG Processing 229/833 atomic regions from SNP 68427 to 69027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,111 DEBUG Processing 224/851 atomic regions from SNP 66941 to 67541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,128 DEBUG Processing 157/996 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,134 DEBUG Processing 136/1111 atomic regions from SNP 40615 to 41215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,275 DEBUG Processing 54/352 atomic regions from SNP 15939 to 16539 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:48,288 DEBUG Processing 14/630 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,291 DEBUG Processing 230/833 atomic regions from SNP 68727 to 69327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,324 DEBUG Processing 225/851 atomic regions from SNP 67241 to 67841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,379 DEBUG Processing 137/1111 atomic regions from SNP 40915 to 41515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,389 DEBUG Processing 158/996 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,476 DEBUG Processing 55/352 atomic regions from SNP 16239 to 16839 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:48,510 DEBUG Processing 231/833 atomic regions from SNP 69027 to 69627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,522 DEBUG Processing 15/630 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,534 DEBUG Processing 226/851 atomic regions from SNP 67541 to 68141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,621 DEBUG Processing 138/1111 atomic regions from SNP 41215 to 41815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,658 DEBUG Processing 159/996 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,677 DEBUG Processing 56/352 atomic regions from SNP 16539 to 17139 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:48,733 DEBUG Processing 232/833 atomic regions from SNP 69327 to 69927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,740 DEBUG Processing 16/630 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,742 DEBUG Processing 227/851 atomic regions from SNP 67841 to 68441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,866 DEBUG Processing 139/1111 atomic regions from SNP 41515 to 42115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,878 DEBUG Processing 57/352 atomic regions from SNP 16839 to 17439 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:48,920 DEBUG Processing 160/996 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,946 DEBUG Processing 233/833 atomic regions from SNP 69627 to 70227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,956 DEBUG Processing 17/630 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,956 DEBUG Processing 228/851 atomic regions from SNP 68141 to 68741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,081 DEBUG Processing 58/352 atomic regions from SNP 17139 to 17739 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:49,108 DEBUG Processing 140/1111 atomic regions from SNP 41815 to 42415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,156 DEBUG Processing 234/833 atomic regions from SNP 69927 to 70527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,167 DEBUG Processing 229/851 atomic regions from SNP 68441 to 69041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,168 DEBUG Processing 18/630 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,174 DEBUG Processing 161/996 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,283 DEBUG Processing 59/352 atomic regions from SNP 17439 to 18039 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:49,355 DEBUG Processing 141/1111 atomic regions from SNP 42115 to 42715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,368 DEBUG Processing 235/833 atomic regions from SNP 70227 to 70827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,380 DEBUG Processing 230/851 atomic regions from SNP 68741 to 69341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,394 DEBUG Processing 19/630 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,413 DEBUG Processing 162/996 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,483 DEBUG Processing 60/352 atomic regions from SNP 17739 to 18339 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:49,582 DEBUG Processing 236/833 atomic regions from SNP 70527 to 71127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,595 DEBUG Processing 231/851 atomic regions from SNP 69041 to 69641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,605 DEBUG Processing 142/1111 atomic regions from SNP 42415 to 43015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,623 DEBUG Processing 20/630 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,674 DEBUG Processing 163/996 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,682 DEBUG Processing 61/352 atomic regions from SNP 18039 to 18639 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:49,788 DEBUG Processing 237/833 atomic regions from SNP 70827 to 71427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,804 DEBUG Processing 232/851 atomic regions from SNP 69341 to 69941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,836 DEBUG Processing 21/630 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,845 DEBUG Processing 143/1111 atomic regions from SNP 42715 to 43315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,882 DEBUG Processing 62/352 atomic regions from SNP 18339 to 18939 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:49,934 DEBUG Processing 164/996 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,995 DEBUG Processing 238/833 atomic regions from SNP 71127 to 71727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,016 DEBUG Processing 233/851 atomic regions from SNP 69641 to 70241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,050 DEBUG Processing 22/630 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,085 DEBUG Processing 63/352 atomic regions from SNP 18639 to 19239 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:50,089 DEBUG Processing 144/1111 atomic regions from SNP 43015 to 43615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,187 DEBUG Processing 165/996 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,220 DEBUG Processing 239/833 atomic regions from SNP 71427 to 72027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,238 DEBUG Processing 234/851 atomic regions from SNP 69941 to 70541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,282 DEBUG Processing 23/630 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,291 DEBUG Processing 64/352 atomic regions from SNP 18939 to 19539 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:50,337 DEBUG Processing 145/1111 atomic regions from SNP 43315 to 43915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,430 DEBUG Processing 166/996 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,433 DEBUG Processing 240/833 atomic regions from SNP 71727 to 72327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,452 DEBUG Processing 235/851 atomic regions from SNP 70241 to 70841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,496 DEBUG Processing 65/352 atomic regions from SNP 19239 to 19839 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:50,516 DEBUG Processing 24/630 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,581 DEBUG Processing 146/1111 atomic regions from SNP 43615 to 44215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,647 DEBUG Processing 241/833 atomic regions from SNP 72027 to 72627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,670 DEBUG Processing 236/851 atomic regions from SNP 70541 to 71141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,672 DEBUG Processing 167/996 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,704 DEBUG Processing 66/352 atomic regions from SNP 19539 to 20139 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:50,738 DEBUG Processing 25/630 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,827 DEBUG Processing 147/1111 atomic regions from SNP 43915 to 44515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,857 DEBUG Processing 242/833 atomic regions from SNP 72327 to 72927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,881 DEBUG Processing 237/851 atomic regions from SNP 70841 to 71441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,907 DEBUG Processing 67/352 atomic regions from SNP 19839 to 20439 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:50,922 DEBUG Processing 168/996 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,956 DEBUG Processing 26/630 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,065 DEBUG Processing 243/833 atomic regions from SNP 72627 to 73227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,071 DEBUG Processing 148/1111 atomic regions from SNP 44215 to 44815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,090 DEBUG Processing 238/851 atomic regions from SNP 71141 to 71741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,110 DEBUG Processing 68/352 atomic regions from SNP 20139 to 20739 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:51,166 DEBUG Processing 27/630 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,178 DEBUG Processing 169/996 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,276 DEBUG Processing 244/833 atomic regions from SNP 72927 to 73527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,307 DEBUG Processing 239/851 atomic regions from SNP 71441 to 72041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,313 DEBUG Processing 69/352 atomic regions from SNP 20439 to 21039 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:51,320 DEBUG Processing 149/1111 atomic regions from SNP 44515 to 45115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,382 DEBUG Processing 28/630 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,425 DEBUG Processing 170/996 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,501 DEBUG Processing 245/833 atomic regions from SNP 73227 to 73827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,524 DEBUG Processing 70/352 atomic regions from SNP 20739 to 21339 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:51,539 DEBUG Processing 240/851 atomic regions from SNP 71741 to 72341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,588 DEBUG Processing 150/1111 atomic regions from SNP 44815 to 45415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,610 DEBUG Processing 29/630 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,702 DEBUG Processing 171/996 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,732 DEBUG Processing 246/833 atomic regions from SNP 73527 to 74127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,751 DEBUG Processing 71/352 atomic regions from SNP 21039 to 21639 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:51,772 DEBUG Processing 241/851 atomic regions from SNP 72041 to 72641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,848 DEBUG Processing 30/630 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,850 DEBUG Processing 151/1111 atomic regions from SNP 45115 to 45715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,955 DEBUG Processing 247/833 atomic regions from SNP 73827 to 74427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,973 DEBUG Processing 72/352 atomic regions from SNP 21339 to 21939 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:51,988 DEBUG Processing 172/996 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,999 DEBUG Processing 242/851 atomic regions from SNP 72341 to 72941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,076 DEBUG Processing 31/630 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,112 DEBUG Processing 152/1111 atomic regions from SNP 45415 to 46015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,182 DEBUG Processing 248/833 atomic regions from SNP 74127 to 74727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,195 DEBUG Processing 73/352 atomic regions from SNP 21639 to 22239 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:52,228 DEBUG Processing 243/851 atomic regions from SNP 72641 to 73241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,282 DEBUG Processing 173/996 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,308 DEBUG Processing 32/630 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,369 DEBUG Processing 153/1111 atomic regions from SNP 45715 to 46315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,408 DEBUG Processing 249/833 atomic regions from SNP 74427 to 75027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,415 DEBUG Processing 74/352 atomic regions from SNP 21939 to 22539 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:52,455 DEBUG Processing 244/851 atomic regions from SNP 72941 to 73541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,542 DEBUG Processing 33/630 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,577 DEBUG Processing 174/996 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,631 DEBUG Processing 154/1111 atomic regions from SNP 46015 to 46615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,635 DEBUG Processing 250/833 atomic regions from SNP 74727 to 75327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,641 DEBUG Processing 75/352 atomic regions from SNP 22239 to 22839 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:52,684 DEBUG Processing 245/851 atomic regions from SNP 73241 to 73841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,775 DEBUG Processing 34/630 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,854 DEBUG Processing 76/352 atomic regions from SNP 22539 to 23139 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:52,860 DEBUG Processing 251/833 atomic regions from SNP 75027 to 75627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,866 DEBUG Processing 175/996 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,892 DEBUG Processing 155/1111 atomic regions from SNP 46315 to 46915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,903 DEBUG Processing 246/851 atomic regions from SNP 73541 to 74141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,991 DEBUG Processing 35/630 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,064 DEBUG Processing 77/352 atomic regions from SNP 22839 to 23439 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:53,077 DEBUG Processing 252/833 atomic regions from SNP 75327 to 75927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,125 DEBUG Processing 247/851 atomic regions from SNP 73841 to 74441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,137 DEBUG Processing 176/996 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,146 DEBUG Processing 156/1111 atomic regions from SNP 46615 to 47215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,209 DEBUG Processing 36/630 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,274 DEBUG Processing 78/352 atomic regions from SNP 23139 to 23739 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:53,293 DEBUG Processing 253/833 atomic regions from SNP 75627 to 76227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,357 DEBUG Processing 248/851 atomic regions from SNP 74141 to 74741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,397 DEBUG Processing 157/1111 atomic regions from SNP 46915 to 47515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,401 DEBUG Processing 177/996 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,424 DEBUG Processing 37/630 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,477 DEBUG Processing 79/352 atomic regions from SNP 23439 to 24039 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:53,503 DEBUG Processing 254/833 atomic regions from SNP 75927 to 76527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,604 DEBUG Processing 249/851 atomic regions from SNP 74441 to 75041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,638 DEBUG Processing 38/630 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,640 DEBUG Processing 178/996 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,646 DEBUG Processing 158/1111 atomic regions from SNP 47215 to 47815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,680 DEBUG Processing 80/352 atomic regions from SNP 23739 to 24339 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:53,711 DEBUG Processing 255/833 atomic regions from SNP 76227 to 76827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,850 DEBUG Processing 250/851 atomic regions from SNP 74741 to 75341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,856 DEBUG Processing 39/630 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,880 DEBUG Processing 179/996 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,884 DEBUG Processing 81/352 atomic regions from SNP 24039 to 24639 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:53,895 DEBUG Processing 159/1111 atomic regions from SNP 47515 to 48115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,924 DEBUG Processing 256/833 atomic regions from SNP 76527 to 77127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,071 DEBUG Processing 40/630 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,087 DEBUG Processing 251/851 atomic regions from SNP 75041 to 75641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,091 DEBUG Processing 82/352 atomic regions from SNP 24339 to 24939 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:54,119 DEBUG Processing 180/996 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,136 DEBUG Processing 257/833 atomic regions from SNP 76827 to 77427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,145 DEBUG Processing 160/1111 atomic regions from SNP 47815 to 48415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,292 DEBUG Processing 41/630 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,306 DEBUG Processing 83/352 atomic regions from SNP 24639 to 25239 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:54,318 DEBUG Processing 252/851 atomic regions from SNP 75341 to 75941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,357 DEBUG Processing 258/833 atomic regions from SNP 77127 to 77727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,368 DEBUG Processing 181/996 atomic regions from SNP 54180 to 54781 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,401 DEBUG Processing 161/1111 atomic regions from SNP 48115 to 48715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,513 DEBUG Processing 42/630 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,517 DEBUG Processing 84/352 atomic regions from SNP 24939 to 25539 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:54,535 DEBUG Processing 253/851 atomic regions from SNP 75641 to 76241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,570 DEBUG Processing 259/833 atomic regions from SNP 77427 to 78027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,614 DEBUG Processing 182/996 atomic regions from SNP 54481 to 55082 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,648 DEBUG Processing 162/1111 atomic regions from SNP 48415 to 49015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,727 DEBUG Processing 85/352 atomic regions from SNP 25239 to 25839 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:54,733 DEBUG Processing 43/630 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,745 DEBUG Processing 254/851 atomic regions from SNP 75941 to 76541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,781 DEBUG Processing 260/833 atomic regions from SNP 77727 to 78327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,860 DEBUG Processing 183/996 atomic regions from SNP 54782 to 55383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,891 DEBUG Processing 163/1111 atomic regions from SNP 48715 to 49315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,935 DEBUG Processing 86/352 atomic regions from SNP 25539 to 26139 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:54,950 DEBUG Processing 44/630 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,956 DEBUG Processing 255/851 atomic regions from SNP 76241 to 76841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,990 DEBUG Processing 261/833 atomic regions from SNP 78027 to 78627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,101 DEBUG Processing 184/996 atomic regions from SNP 55083 to 55684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,142 DEBUG Processing 164/1111 atomic regions from SNP 49015 to 49615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,159 DEBUG Processing 87/352 atomic regions from SNP 25839 to 26439 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:55,173 DEBUG Processing 45/630 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,176 DEBUG Processing 256/851 atomic regions from SNP 76541 to 77141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,208 DEBUG Processing 262/833 atomic regions from SNP 78327 to 78927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,351 DEBUG Processing 185/996 atomic regions from SNP 55384 to 55985 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,379 DEBUG Processing 88/352 atomic regions from SNP 26139 to 26739 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:55,401 DEBUG Processing 46/630 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,404 DEBUG Processing 165/1111 atomic regions from SNP 49315 to 49915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,406 DEBUG Processing 257/851 atomic regions from SNP 76841 to 77441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,432 DEBUG Processing 263/833 atomic regions from SNP 78627 to 79227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,600 DEBUG Processing 89/352 atomic regions from SNP 26439 to 27039 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:55,601 DEBUG Processing 186/996 atomic regions from SNP 55685 to 56286 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,627 DEBUG Processing 258/851 atomic regions from SNP 77141 to 77741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,629 DEBUG Processing 47/630 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,650 DEBUG Processing 264/833 atomic regions from SNP 78927 to 79527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,660 DEBUG Processing 166/1111 atomic regions from SNP 49615 to 50215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,821 DEBUG Processing 90/352 atomic regions from SNP 26739 to 27339 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:55,853 DEBUG Processing 259/851 atomic regions from SNP 77441 to 78041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,860 DEBUG Processing 187/996 atomic regions from SNP 55986 to 56587 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,863 DEBUG Processing 48/630 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,872 DEBUG Processing 265/833 atomic regions from SNP 79227 to 79827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,936 DEBUG Processing 167/1111 atomic regions from SNP 49915 to 50515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,038 DEBUG Processing 91/352 atomic regions from SNP 27039 to 27639 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:56,073 DEBUG Processing 260/851 atomic regions from SNP 77741 to 78341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,090 DEBUG Processing 266/833 atomic regions from SNP 79527 to 80127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,091 DEBUG Processing 49/630 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,130 DEBUG Processing 188/996 atomic regions from SNP 56287 to 56888 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,202 DEBUG Processing 168/1111 atomic regions from SNP 50215 to 50815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,253 DEBUG Processing 92/352 atomic regions from SNP 27339 to 27939 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:56,295 DEBUG Processing 261/851 atomic regions from SNP 78041 to 78641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,308 DEBUG Processing 267/833 atomic regions from SNP 79827 to 80427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,318 DEBUG Processing 50/630 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,408 DEBUG Processing 189/996 atomic regions from SNP 56588 to 57189 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,452 DEBUG Processing 169/1111 atomic regions from SNP 50515 to 51115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,468 DEBUG Processing 93/352 atomic regions from SNP 27639 to 28239 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:56,510 DEBUG Processing 262/851 atomic regions from SNP 78341 to 78941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,521 DEBUG Processing 268/833 atomic regions from SNP 80127 to 80727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,538 DEBUG Processing 51/630 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,658 DEBUG Processing 190/996 atomic regions from SNP 56889 to 57490 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,679 DEBUG Processing 94/352 atomic regions from SNP 27939 to 28539 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:56,701 DEBUG Processing 170/1111 atomic regions from SNP 50815 to 51415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,731 DEBUG Processing 263/851 atomic regions from SNP 78641 to 79241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,735 DEBUG Processing 269/833 atomic regions from SNP 80427 to 81027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,756 DEBUG Processing 52/630 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,893 DEBUG Processing 95/352 atomic regions from SNP 28239 to 28839 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:56,912 DEBUG Processing 191/996 atomic regions from SNP 57190 to 57791 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,950 DEBUG Processing 264/851 atomic regions from SNP 78941 to 79541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,952 DEBUG Processing 270/833 atomic regions from SNP 80727 to 81327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,970 DEBUG Processing 171/1111 atomic regions from SNP 51115 to 51715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,979 DEBUG Processing 53/630 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,116 DEBUG Processing 96/352 atomic regions from SNP 28539 to 29139 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:57,171 DEBUG Processing 271/833 atomic regions from SNP 81027 to 81627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,174 DEBUG Processing 265/851 atomic regions from SNP 79241 to 79841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,176 DEBUG Processing 192/996 atomic regions from SNP 57491 to 58092 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,202 DEBUG Processing 54/630 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,247 DEBUG Processing 172/1111 atomic regions from SNP 51415 to 52015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,342 DEBUG Processing 97/352 atomic regions from SNP 28839 to 29439 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:57,389 DEBUG Processing 272/833 atomic regions from SNP 81327 to 81927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,396 DEBUG Processing 266/851 atomic regions from SNP 79541 to 80141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,432 DEBUG Processing 55/630 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,433 DEBUG Processing 193/996 atomic regions from SNP 57792 to 58393 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,508 DEBUG Processing 173/1111 atomic regions from SNP 51715 to 52315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,571 DEBUG Processing 98/352 atomic regions from SNP 29139 to 29739 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:57,606 DEBUG Processing 273/833 atomic regions from SNP 81627 to 82227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,615 DEBUG Processing 267/851 atomic regions from SNP 79841 to 80441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,652 DEBUG Processing 56/630 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,676 DEBUG Processing 194/996 atomic regions from SNP 58093 to 58694 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,782 DEBUG Processing 174/1111 atomic regions from SNP 52015 to 52615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,802 DEBUG Processing 99/352 atomic regions from SNP 29439 to 30039 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:57,817 DEBUG Processing 274/833 atomic regions from SNP 81927 to 82527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,828 DEBUG Processing 268/851 atomic regions from SNP 80141 to 80741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,870 DEBUG Processing 57/630 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,917 DEBUG Processing 195/996 atomic regions from SNP 58394 to 58995 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,036 DEBUG Processing 275/833 atomic regions from SNP 82227 to 82827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,036 DEBUG Processing 100/352 atomic regions from SNP 29739 to 30339 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:58,039 DEBUG Processing 175/1111 atomic regions from SNP 52315 to 52915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,048 DEBUG Processing 269/851 atomic regions from SNP 80441 to 81041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,089 DEBUG Processing 58/630 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,156 DEBUG Processing 196/996 atomic regions from SNP 58695 to 59296 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,254 DEBUG Processing 276/833 atomic regions from SNP 82527 to 83127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,262 DEBUG Processing 101/352 atomic regions from SNP 30039 to 30639 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:58,267 DEBUG Processing 270/851 atomic regions from SNP 80741 to 81341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,291 DEBUG Processing 176/1111 atomic regions from SNP 52615 to 53215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,308 DEBUG Processing 59/630 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,398 DEBUG Processing 197/996 atomic regions from SNP 58996 to 59597 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,478 DEBUG Processing 277/833 atomic regions from SNP 82827 to 83427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,491 DEBUG Processing 271/851 atomic regions from SNP 81041 to 81641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,505 DEBUG Processing 102/352 atomic regions from SNP 30339 to 30939 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:58,531 DEBUG Processing 60/630 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,549 DEBUG Processing 177/1111 atomic regions from SNP 52915 to 53515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,641 DEBUG Processing 198/996 atomic regions from SNP 59297 to 59898 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,704 DEBUG Processing 278/833 atomic regions from SNP 83127 to 83727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,712 DEBUG Processing 272/851 atomic regions from SNP 81341 to 81941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,719 DEBUG Processing 103/352 atomic regions from SNP 30639 to 31239 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:58,748 DEBUG Processing 61/630 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,800 DEBUG Processing 178/1111 atomic regions from SNP 53215 to 53815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,876 DEBUG Processing 199/996 atomic regions from SNP 59598 to 60199 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,921 DEBUG Processing 279/833 atomic regions from SNP 83427 to 84027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,924 DEBUG Processing 104/352 atomic regions from SNP 30939 to 31539 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:58,935 DEBUG Processing 273/851 atomic regions from SNP 81641 to 82241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,964 DEBUG Processing 62/630 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,052 DEBUG Processing 179/1111 atomic regions from SNP 53515 to 54115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,113 DEBUG Processing 200/996 atomic regions from SNP 59899 to 60500 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,130 DEBUG Processing 105/352 atomic regions from SNP 31239 to 31839 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:59,135 DEBUG Processing 280/833 atomic regions from SNP 83727 to 84327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,151 DEBUG Processing 274/851 atomic regions from SNP 81941 to 82541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,179 DEBUG Processing 63/630 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,301 DEBUG Processing 180/1111 atomic regions from SNP 53815 to 54415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,341 DEBUG Processing 106/352 atomic regions from SNP 31539 to 32139 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:59,351 DEBUG Processing 281/833 atomic regions from SNP 84027 to 84627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,357 DEBUG Processing 201/996 atomic regions from SNP 60200 to 60801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,370 DEBUG Processing 275/851 atomic regions from SNP 82241 to 82841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,399 DEBUG Processing 64/630 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,553 DEBUG Processing 107/352 atomic regions from SNP 31839 to 32439 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:59,566 DEBUG Processing 282/833 atomic regions from SNP 84327 to 84927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,567 DEBUG Processing 181/1111 atomic regions from SNP 54115 to 54715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,587 DEBUG Processing 276/851 atomic regions from SNP 82541 to 83141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,605 DEBUG Processing 202/996 atomic regions from SNP 60501 to 61102 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,620 DEBUG Processing 65/630 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,781 DEBUG Processing 283/833 atomic regions from SNP 84627 to 85227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,785 DEBUG Processing 108/352 atomic regions from SNP 32139 to 32739 for chrX (subchromosome 5 of 6). 2025-01-31 09:41:59,804 DEBUG Processing 277/851 atomic regions from SNP 82841 to 83441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,836 DEBUG Processing 182/1111 atomic regions from SNP 54415 to 55015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,840 DEBUG Processing 66/630 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,851 DEBUG Processing 203/996 atomic regions from SNP 60802 to 61403 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,991 DEBUG Processing 284/833 atomic regions from SNP 84927 to 85527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,002 DEBUG Processing 109/352 atomic regions from SNP 32439 to 33039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:00,021 DEBUG Processing 278/851 atomic regions from SNP 83141 to 83741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,060 DEBUG Processing 67/630 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,094 DEBUG Processing 204/996 atomic regions from SNP 61103 to 61704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,107 DEBUG Processing 183/1111 atomic regions from SNP 54715 to 55315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,201 DEBUG Processing 285/833 atomic regions from SNP 85227 to 85827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,210 DEBUG Processing 110/352 atomic regions from SNP 32739 to 33339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:00,233 DEBUG Processing 279/851 atomic regions from SNP 83441 to 84041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,277 DEBUG Processing 68/630 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,336 DEBUG Processing 205/996 atomic regions from SNP 61404 to 62005 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,382 DEBUG Processing 184/1111 atomic regions from SNP 55015 to 55615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,416 DEBUG Processing 286/833 atomic regions from SNP 85527 to 86127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,419 DEBUG Processing 111/352 atomic regions from SNP 33039 to 33639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:00,448 DEBUG Processing 280/851 atomic regions from SNP 83741 to 84341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,494 DEBUG Processing 69/630 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,578 DEBUG Processing 206/996 atomic regions from SNP 61705 to 62306 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,630 DEBUG Processing 112/352 atomic regions from SNP 33339 to 33939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:00,634 DEBUG Processing 287/833 atomic regions from SNP 85827 to 86427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,658 DEBUG Processing 185/1111 atomic regions from SNP 55315 to 55915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,670 DEBUG Processing 281/851 atomic regions from SNP 84041 to 84641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,711 DEBUG Processing 70/630 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,824 DEBUG Processing 207/996 atomic regions from SNP 62006 to 62607 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,844 DEBUG Processing 113/352 atomic regions from SNP 33639 to 34239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:00,857 DEBUG Processing 288/833 atomic regions from SNP 86127 to 86727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,897 DEBUG Processing 282/851 atomic regions from SNP 84341 to 84941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,931 DEBUG Processing 71/630 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,934 DEBUG Processing 186/1111 atomic regions from SNP 55615 to 56215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,064 DEBUG Processing 114/352 atomic regions from SNP 33939 to 34539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:01,075 DEBUG Processing 208/996 atomic regions from SNP 62307 to 62908 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,081 DEBUG Processing 289/833 atomic regions from SNP 86427 to 87027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,125 DEBUG Processing 283/851 atomic regions from SNP 84641 to 85241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,156 DEBUG Processing 72/630 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,223 DEBUG Processing 187/1111 atomic regions from SNP 55915 to 56515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,281 DEBUG Processing 115/352 atomic regions from SNP 34239 to 34839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:01,306 DEBUG Processing 290/833 atomic regions from SNP 86727 to 87327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,326 DEBUG Processing 209/996 atomic regions from SNP 62608 to 63209 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,351 DEBUG Processing 284/851 atomic regions from SNP 84941 to 85541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,377 DEBUG Processing 73/630 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,474 DEBUG Processing 188/1111 atomic regions from SNP 56215 to 56815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,490 DEBUG Processing 116/352 atomic regions from SNP 34539 to 35139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:01,524 DEBUG Processing 291/833 atomic regions from SNP 87027 to 87627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,571 DEBUG Processing 210/996 atomic regions from SNP 62909 to 63510 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,571 DEBUG Processing 285/851 atomic regions from SNP 85241 to 85841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,597 DEBUG Processing 74/630 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,703 DEBUG Processing 117/352 atomic regions from SNP 34839 to 35439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:01,725 DEBUG Processing 189/1111 atomic regions from SNP 56515 to 57115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,739 DEBUG Processing 292/833 atomic regions from SNP 87327 to 87927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,785 DEBUG Processing 286/851 atomic regions from SNP 85541 to 86141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,823 DEBUG Processing 75/630 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,824 DEBUG Processing 211/996 atomic regions from SNP 63210 to 63811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,917 DEBUG Processing 118/352 atomic regions from SNP 35139 to 35739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:01,952 DEBUG Processing 293/833 atomic regions from SNP 87627 to 88227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,982 DEBUG Processing 190/1111 atomic regions from SNP 56815 to 57415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,999 DEBUG Processing 287/851 atomic regions from SNP 85841 to 86441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,049 DEBUG Processing 76/630 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,075 DEBUG Processing 212/996 atomic regions from SNP 63511 to 64112 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,130 DEBUG Processing 119/352 atomic regions from SNP 35439 to 36039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:02,165 DEBUG Processing 294/833 atomic regions from SNP 87927 to 88527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,214 DEBUG Processing 288/851 atomic regions from SNP 86141 to 86741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,230 DEBUG Processing 191/1111 atomic regions from SNP 57115 to 57715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,278 DEBUG Processing 77/630 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,348 DEBUG Processing 213/996 atomic regions from SNP 63812 to 64413 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,350 DEBUG Processing 120/352 atomic regions from SNP 35739 to 36339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:02,377 DEBUG Processing 295/833 atomic regions from SNP 88227 to 88827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,428 DEBUG Processing 289/851 atomic regions from SNP 86441 to 87041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,485 DEBUG Processing 192/1111 atomic regions from SNP 57415 to 58015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,503 DEBUG Processing 78/630 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,567 DEBUG Processing 121/352 atomic regions from SNP 36039 to 36639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:02,586 DEBUG Processing 296/833 atomic regions from SNP 88527 to 89127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,606 DEBUG Processing 214/996 atomic regions from SNP 64113 to 64714 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,641 DEBUG Processing 290/851 atomic regions from SNP 86741 to 87341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,724 DEBUG Processing 79/630 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,765 DEBUG Processing 193/1111 atomic regions from SNP 57715 to 58315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,785 DEBUG Processing 122/352 atomic regions from SNP 36339 to 36939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:02,797 DEBUG Processing 297/833 atomic regions from SNP 88827 to 89427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,853 DEBUG Processing 291/851 atomic regions from SNP 87041 to 87641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,854 DEBUG Processing 215/996 atomic regions from SNP 64414 to 65015 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,945 DEBUG Processing 80/630 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,997 DEBUG Processing 123/352 atomic regions from SNP 36639 to 37239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,009 DEBUG Processing 298/833 atomic regions from SNP 89127 to 89727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,032 DEBUG Processing 194/1111 atomic regions from SNP 58015 to 58615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,067 DEBUG Processing 292/851 atomic regions from SNP 87341 to 87941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,101 DEBUG Processing 216/996 atomic regions from SNP 64715 to 65316 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,171 DEBUG Processing 81/630 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,216 DEBUG Processing 124/352 atomic regions from SNP 36939 to 37539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,223 DEBUG Processing 299/833 atomic regions from SNP 89427 to 90027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,280 DEBUG Processing 293/851 atomic regions from SNP 87641 to 88241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,282 DEBUG Processing 195/1111 atomic regions from SNP 58315 to 58915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,348 DEBUG Processing 217/996 atomic regions from SNP 65016 to 65617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,396 DEBUG Processing 82/630 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,431 DEBUG Processing 125/352 atomic regions from SNP 37239 to 37839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,432 DEBUG Processing 300/833 atomic regions from SNP 89727 to 90327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,496 DEBUG Processing 294/851 atomic regions from SNP 87941 to 88541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,530 DEBUG Processing 196/1111 atomic regions from SNP 58615 to 59215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,596 DEBUG Processing 218/996 atomic regions from SNP 65317 to 65917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,617 DEBUG Processing 83/630 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,641 DEBUG Processing 126/352 atomic regions from SNP 37539 to 38139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,642 DEBUG Processing 301/833 atomic regions from SNP 90027 to 90627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,709 DEBUG Processing 295/851 atomic regions from SNP 88241 to 88841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,774 DEBUG Processing 197/1111 atomic regions from SNP 58915 to 59515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,833 DEBUG Processing 84/630 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,837 DEBUG Processing 219/996 atomic regions from SNP 65617 to 66217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,849 DEBUG Processing 127/352 atomic regions from SNP 37839 to 38439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,850 DEBUG Processing 302/833 atomic regions from SNP 90327 to 90927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,920 DEBUG Processing 296/851 atomic regions from SNP 88541 to 89141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,019 DEBUG Processing 198/1111 atomic regions from SNP 59215 to 59815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,054 DEBUG Processing 85/630 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,061 DEBUG Processing 303/833 atomic regions from SNP 90627 to 91227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,064 DEBUG Processing 128/352 atomic regions from SNP 38139 to 38739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,086 DEBUG Processing 220/996 atomic regions from SNP 65917 to 66517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,132 DEBUG Processing 297/851 atomic regions from SNP 88841 to 89441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,273 DEBUG Processing 304/833 atomic regions from SNP 90927 to 91527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,276 DEBUG Processing 86/630 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,278 DEBUG Processing 129/352 atomic regions from SNP 38439 to 39039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,279 DEBUG Processing 199/1111 atomic regions from SNP 59515 to 60115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,330 DEBUG Processing 221/996 atomic regions from SNP 66217 to 66817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,342 DEBUG Processing 298/851 atomic regions from SNP 89141 to 89741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,485 DEBUG Processing 305/833 atomic regions from SNP 91227 to 91827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,490 DEBUG Processing 130/352 atomic regions from SNP 38739 to 39339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,495 DEBUG Processing 87/630 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,532 DEBUG Processing 200/1111 atomic regions from SNP 59815 to 60415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,554 DEBUG Processing 299/851 atomic regions from SNP 89441 to 90041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,573 DEBUG Processing 222/996 atomic regions from SNP 66517 to 67117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,700 DEBUG Processing 306/833 atomic regions from SNP 91527 to 92127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,708 DEBUG Processing 131/352 atomic regions from SNP 39039 to 39639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,726 DEBUG Processing 88/630 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,770 DEBUG Processing 300/851 atomic regions from SNP 89741 to 90341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,782 DEBUG Processing 201/1111 atomic regions from SNP 60115 to 60715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,821 DEBUG Processing 223/996 atomic regions from SNP 66817 to 67417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,910 DEBUG Processing 307/833 atomic regions from SNP 91827 to 92427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,922 DEBUG Processing 132/352 atomic regions from SNP 39339 to 39939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,952 DEBUG Processing 89/630 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,985 DEBUG Processing 301/851 atomic regions from SNP 90041 to 90641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,029 DEBUG Processing 202/1111 atomic regions from SNP 60415 to 61015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,061 DEBUG Processing 224/996 atomic regions from SNP 67117 to 67717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,122 DEBUG Processing 308/833 atomic regions from SNP 92127 to 92727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,130 DEBUG Processing 133/352 atomic regions from SNP 39639 to 40239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,170 DEBUG Processing 90/630 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,200 DEBUG Processing 302/851 atomic regions from SNP 90341 to 90941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,285 DEBUG Processing 203/1111 atomic regions from SNP 60715 to 61315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,300 DEBUG Processing 225/996 atomic regions from SNP 67417 to 68017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,332 DEBUG Processing 309/833 atomic regions from SNP 92427 to 93027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,338 DEBUG Processing 134/352 atomic regions from SNP 39939 to 40539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,383 DEBUG Processing 91/630 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,411 DEBUG Processing 303/851 atomic regions from SNP 90641 to 91241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,540 DEBUG Processing 204/1111 atomic regions from SNP 61015 to 61615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,542 DEBUG Processing 226/996 atomic regions from SNP 67717 to 68317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,546 DEBUG Processing 310/833 atomic regions from SNP 92727 to 93327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,547 DEBUG Processing 135/352 atomic regions from SNP 40239 to 40839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,599 DEBUG Processing 92/630 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,627 DEBUG Processing 304/851 atomic regions from SNP 90941 to 91541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,757 DEBUG Processing 136/352 atomic regions from SNP 40539 to 41139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,762 DEBUG Processing 311/833 atomic regions from SNP 93027 to 93627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,788 DEBUG Processing 227/996 atomic regions from SNP 68017 to 68617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,791 DEBUG Processing 205/1111 atomic regions from SNP 61315 to 61915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,816 DEBUG Processing 93/630 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,839 DEBUG Processing 305/851 atomic regions from SNP 91241 to 91841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,964 DEBUG Processing 137/352 atomic regions from SNP 40839 to 41439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,973 DEBUG Processing 312/833 atomic regions from SNP 93327 to 93927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,029 DEBUG Processing 94/630 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,031 DEBUG Processing 228/996 atomic regions from SNP 68317 to 68917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,036 DEBUG Processing 206/1111 atomic regions from SNP 61615 to 62215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,050 DEBUG Processing 306/851 atomic regions from SNP 91541 to 92141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,169 DEBUG Processing 138/352 atomic regions from SNP 41139 to 41739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,181 DEBUG Processing 313/833 atomic regions from SNP 93627 to 94227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,243 DEBUG Processing 95/630 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,260 DEBUG Processing 307/851 atomic regions from SNP 91841 to 92441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,270 DEBUG Processing 229/996 atomic regions from SNP 68617 to 69217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,282 DEBUG Processing 207/1111 atomic regions from SNP 61915 to 62515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,371 DEBUG Processing 139/352 atomic regions from SNP 41439 to 42039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,386 DEBUG Processing 314/833 atomic regions from SNP 93927 to 94527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,468 DEBUG Processing 96/630 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,470 DEBUG Processing 308/851 atomic regions from SNP 92141 to 92741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,506 DEBUG Processing 230/996 atomic regions from SNP 68917 to 69517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,523 DEBUG Processing 208/1111 atomic regions from SNP 62215 to 62815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,573 DEBUG Processing 140/352 atomic regions from SNP 41739 to 42339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,590 DEBUG Processing 315/833 atomic regions from SNP 94227 to 94827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,681 DEBUG Processing 309/851 atomic regions from SNP 92441 to 93041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,683 DEBUG Processing 97/630 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,747 DEBUG Processing 231/996 atomic regions from SNP 69217 to 69817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,769 DEBUG Processing 209/1111 atomic regions from SNP 62515 to 63115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,776 DEBUG Processing 141/352 atomic regions from SNP 42039 to 42639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,797 DEBUG Processing 316/833 atomic regions from SNP 94527 to 95127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,889 DEBUG Processing 310/851 atomic regions from SNP 92741 to 93341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,896 DEBUG Processing 98/630 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,979 DEBUG Processing 142/352 atomic regions from SNP 42339 to 42939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,984 DEBUG Processing 232/996 atomic regions from SNP 69517 to 70117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,003 DEBUG Processing 317/833 atomic regions from SNP 94827 to 95427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,012 DEBUG Processing 210/1111 atomic regions from SNP 62815 to 63415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,097 DEBUG Processing 311/851 atomic regions from SNP 93041 to 93641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,107 DEBUG Processing 99/630 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,183 DEBUG Processing 143/352 atomic regions from SNP 42639 to 43239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:07,214 DEBUG Processing 318/833 atomic regions from SNP 95127 to 95727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,222 DEBUG Processing 233/996 atomic regions from SNP 69817 to 70417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,256 DEBUG Processing 211/1111 atomic regions from SNP 63115 to 63715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,306 DEBUG Processing 312/851 atomic regions from SNP 93341 to 93941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,318 DEBUG Processing 100/630 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,389 DEBUG Processing 144/352 atomic regions from SNP 42939 to 43539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:07,422 DEBUG Processing 319/833 atomic regions from SNP 95427 to 96027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,457 DEBUG Processing 234/996 atomic regions from SNP 70117 to 70717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,499 DEBUG Processing 212/1111 atomic regions from SNP 63415 to 64015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,510 DEBUG Processing 313/851 atomic regions from SNP 93641 to 94241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,526 DEBUG Processing 101/630 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,587 DEBUG Processing 145/352 atomic regions from SNP 43239 to 43839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:07,626 DEBUG Processing 320/833 atomic regions from SNP 95727 to 96327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,691 DEBUG Processing 235/996 atomic regions from SNP 70417 to 71017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,721 DEBUG Processing 314/851 atomic regions from SNP 93941 to 94541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,735 DEBUG Processing 102/630 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,742 DEBUG Processing 213/1111 atomic regions from SNP 63715 to 64315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,788 DEBUG Processing 146/352 atomic regions from SNP 43539 to 44139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:07,832 DEBUG Processing 321/833 atomic regions from SNP 96027 to 96627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,922 DEBUG Processing 236/996 atomic regions from SNP 70717 to 71317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,933 DEBUG Processing 315/851 atomic regions from SNP 94241 to 94841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,946 DEBUG Processing 103/630 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,987 DEBUG Processing 214/1111 atomic regions from SNP 64015 to 64615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,989 DEBUG Processing 147/352 atomic regions from SNP 43839 to 44439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,043 DEBUG Processing 322/833 atomic regions from SNP 96327 to 96927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,150 DEBUG Processing 316/851 atomic regions from SNP 94541 to 95141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,157 DEBUG Processing 104/630 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,158 DEBUG Processing 237/996 atomic regions from SNP 71017 to 71617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,192 DEBUG Processing 148/352 atomic regions from SNP 44139 to 44739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,234 DEBUG Processing 215/1111 atomic regions from SNP 64315 to 64915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,249 DEBUG Processing 323/833 atomic regions from SNP 96627 to 97227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,361 DEBUG Processing 317/851 atomic regions from SNP 94841 to 95441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,371 DEBUG Processing 105/630 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,397 DEBUG Processing 149/352 atomic regions from SNP 44439 to 45039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,398 DEBUG Processing 238/996 atomic regions from SNP 71317 to 71917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,459 DEBUG Processing 324/833 atomic regions from SNP 96927 to 97527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,482 DEBUG Processing 216/1111 atomic regions from SNP 64615 to 65215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,575 DEBUG Processing 318/851 atomic regions from SNP 95141 to 95741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,594 DEBUG Processing 106/630 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,604 DEBUG Processing 150/352 atomic regions from SNP 44739 to 45339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,637 DEBUG Processing 239/996 atomic regions from SNP 71617 to 72217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,667 DEBUG Processing 325/833 atomic regions from SNP 97227 to 97827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,724 DEBUG Processing 217/1111 atomic regions from SNP 64915 to 65515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,783 DEBUG Processing 319/851 atomic regions from SNP 95441 to 96041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,809 DEBUG Processing 151/352 atomic regions from SNP 45039 to 45639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,831 DEBUG Processing 107/630 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,875 DEBUG Processing 240/996 atomic regions from SNP 71917 to 72517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,877 DEBUG Processing 326/833 atomic regions from SNP 97527 to 98127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,966 DEBUG Processing 218/1111 atomic regions from SNP 65215 to 65815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,995 DEBUG Processing 320/851 atomic regions from SNP 95741 to 96341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,011 DEBUG Processing 152/352 atomic regions from SNP 45339 to 45939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,043 DEBUG Processing 108/630 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,084 DEBUG Processing 327/833 atomic regions from SNP 97827 to 98427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,107 DEBUG Processing 241/996 atomic regions from SNP 72217 to 72817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,207 DEBUG Processing 321/851 atomic regions from SNP 96041 to 96641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,210 DEBUG Processing 219/1111 atomic regions from SNP 65515 to 66115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,215 DEBUG Processing 153/352 atomic regions from SNP 45639 to 46239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,255 DEBUG Processing 109/630 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,291 DEBUG Processing 328/833 atomic regions from SNP 98127 to 98727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,340 DEBUG Processing 242/996 atomic regions from SNP 72517 to 73117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,416 DEBUG Processing 154/352 atomic regions from SNP 45939 to 46539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,422 DEBUG Processing 322/851 atomic regions from SNP 96341 to 96941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,457 DEBUG Processing 220/1111 atomic regions from SNP 65815 to 66415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,466 DEBUG Processing 110/630 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,501 DEBUG Processing 329/833 atomic regions from SNP 98427 to 99027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,576 DEBUG Processing 243/996 atomic regions from SNP 72817 to 73417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,625 DEBUG Processing 155/352 atomic regions from SNP 46239 to 46839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,642 DEBUG Processing 323/851 atomic regions from SNP 96641 to 97241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,681 DEBUG Processing 111/630 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,711 DEBUG Processing 221/1111 atomic regions from SNP 66115 to 66715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,716 DEBUG Processing 330/833 atomic regions from SNP 98727 to 99327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,812 DEBUG Processing 244/996 atomic regions from SNP 73117 to 73717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,831 DEBUG Processing 156/352 atomic regions from SNP 46539 to 47139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,859 DEBUG Processing 324/851 atomic regions from SNP 96941 to 97541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,896 DEBUG Processing 112/630 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,927 DEBUG Processing 331/833 atomic regions from SNP 99027 to 99627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,958 DEBUG Processing 222/1111 atomic regions from SNP 66415 to 67015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,036 DEBUG Processing 157/352 atomic regions from SNP 46839 to 47439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,049 DEBUG Processing 245/996 atomic regions from SNP 73417 to 74017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,071 DEBUG Processing 325/851 atomic regions from SNP 97241 to 97841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,113 DEBUG Processing 113/630 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,140 DEBUG Processing 332/833 atomic regions from SNP 99327 to 99927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,206 DEBUG Processing 223/1111 atomic regions from SNP 66715 to 67315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,241 DEBUG Processing 158/352 atomic regions from SNP 47139 to 47739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,288 DEBUG Processing 326/851 atomic regions from SNP 97541 to 98141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,297 DEBUG Processing 246/996 atomic regions from SNP 73717 to 74317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,328 DEBUG Processing 114/630 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,355 DEBUG Processing 333/833 atomic regions from SNP 99627 to 100227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,447 DEBUG Processing 159/352 atomic regions from SNP 47439 to 48039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,455 DEBUG Processing 224/1111 atomic regions from SNP 67015 to 67615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,507 DEBUG Processing 327/851 atomic regions from SNP 97841 to 98441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,538 DEBUG Processing 247/996 atomic regions from SNP 74017 to 74617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,541 DEBUG Processing 115/630 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,569 DEBUG Processing 334/833 atomic regions from SNP 99927 to 100527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,653 DEBUG Processing 160/352 atomic regions from SNP 47739 to 48339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,709 DEBUG Processing 225/1111 atomic regions from SNP 67315 to 67915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,727 DEBUG Processing 328/851 atomic regions from SNP 98141 to 98741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,762 DEBUG Processing 116/630 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,785 DEBUG Processing 248/996 atomic regions from SNP 74317 to 74917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,786 DEBUG Processing 335/833 atomic regions from SNP 100227 to 100827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,864 DEBUG Processing 161/352 atomic regions from SNP 48039 to 48639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,946 DEBUG Processing 329/851 atomic regions from SNP 98441 to 99041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,958 DEBUG Processing 226/1111 atomic regions from SNP 67615 to 68215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,980 DEBUG Processing 117/630 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,999 DEBUG Processing 336/833 atomic regions from SNP 100527 to 101127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,027 DEBUG Processing 249/996 atomic regions from SNP 74617 to 75217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,069 DEBUG Processing 162/352 atomic regions from SNP 48339 to 48939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,163 DEBUG Processing 330/851 atomic regions from SNP 98741 to 99341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,201 DEBUG Processing 118/630 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,209 DEBUG Processing 227/1111 atomic regions from SNP 67915 to 68515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,214 DEBUG Processing 337/833 atomic regions from SNP 100827 to 101427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,272 DEBUG Processing 250/996 atomic regions from SNP 74917 to 75517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,278 DEBUG Processing 163/352 atomic regions from SNP 48639 to 49239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,385 DEBUG Processing 331/851 atomic regions from SNP 99041 to 99641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,419 DEBUG Processing 119/630 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,430 DEBUG Processing 338/833 atomic regions from SNP 101127 to 101727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,460 DEBUG Processing 228/1111 atomic regions from SNP 68215 to 68815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,488 DEBUG Processing 164/352 atomic regions from SNP 48939 to 49539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,517 DEBUG Processing 251/996 atomic regions from SNP 75217 to 75817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,600 DEBUG Processing 332/851 atomic regions from SNP 99341 to 99941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,636 DEBUG Processing 120/630 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,655 DEBUG Processing 339/833 atomic regions from SNP 101427 to 102027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,702 DEBUG Processing 165/352 atomic regions from SNP 49239 to 49839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,710 DEBUG Processing 229/1111 atomic regions from SNP 68515 to 69115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,762 DEBUG Processing 252/996 atomic regions from SNP 75517 to 76117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,816 DEBUG Processing 333/851 atomic regions from SNP 99641 to 100241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,856 DEBUG Processing 121/630 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,883 DEBUG Processing 340/833 atomic regions from SNP 101727 to 102327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,912 DEBUG Processing 166/352 atomic regions from SNP 49539 to 50139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,958 DEBUG Processing 230/1111 atomic regions from SNP 68815 to 69415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,007 DEBUG Processing 253/996 atomic regions from SNP 75817 to 76417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,030 DEBUG Processing 334/851 atomic regions from SNP 99941 to 100541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,073 DEBUG Processing 122/630 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,095 DEBUG Processing 341/833 atomic regions from SNP 102027 to 102627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,123 DEBUG Processing 167/352 atomic regions from SNP 49839 to 50439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,220 DEBUG Processing 231/1111 atomic regions from SNP 69115 to 69715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,247 DEBUG Processing 335/851 atomic regions from SNP 100241 to 100841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,249 DEBUG Processing 254/996 atomic regions from SNP 76117 to 76717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,293 DEBUG Processing 123/630 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,311 DEBUG Processing 342/833 atomic regions from SNP 102327 to 102927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,329 DEBUG Processing 168/352 atomic regions from SNP 50139 to 50739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,464 DEBUG Processing 336/851 atomic regions from SNP 100541 to 101141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,493 DEBUG Processing 232/1111 atomic regions from SNP 69415 to 70015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,494 DEBUG Processing 255/996 atomic regions from SNP 76417 to 77017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,516 DEBUG Processing 124/630 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,523 DEBUG Processing 343/833 atomic regions from SNP 102627 to 103227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,540 DEBUG Processing 169/352 atomic regions from SNP 50439 to 51039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,678 DEBUG Processing 337/851 atomic regions from SNP 100841 to 101441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,736 DEBUG Processing 344/833 atomic regions from SNP 102927 to 103527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,736 DEBUG Processing 125/630 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,736 DEBUG Processing 256/996 atomic regions from SNP 76717 to 77317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,742 DEBUG Processing 233/1111 atomic regions from SNP 69715 to 70315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,750 DEBUG Processing 170/352 atomic regions from SNP 50739 to 51339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,891 DEBUG Processing 338/851 atomic regions from SNP 101141 to 101741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,950 DEBUG Processing 345/833 atomic regions from SNP 103227 to 103827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,955 DEBUG Processing 126/630 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,961 DEBUG Processing 171/352 atomic regions from SNP 51039 to 51639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,979 DEBUG Processing 257/996 atomic regions from SNP 77017 to 77617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,990 DEBUG Processing 234/1111 atomic regions from SNP 70015 to 70615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,105 DEBUG Processing 339/851 atomic regions from SNP 101441 to 102041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,167 DEBUG Processing 346/833 atomic regions from SNP 103527 to 104127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,172 DEBUG Processing 172/352 atomic regions from SNP 51339 to 51939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,175 DEBUG Processing 127/630 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,223 DEBUG Processing 258/996 atomic regions from SNP 77317 to 77917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,240 DEBUG Processing 235/1111 atomic regions from SNP 70315 to 70915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,332 DEBUG Processing 340/851 atomic regions from SNP 101741 to 102341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,381 DEBUG Processing 347/833 atomic regions from SNP 103827 to 104427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,382 DEBUG Processing 173/352 atomic regions from SNP 51639 to 52239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,394 DEBUG Processing 128/630 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,463 DEBUG Processing 259/996 atomic regions from SNP 77617 to 78217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,487 DEBUG Processing 236/1111 atomic regions from SNP 70615 to 71215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,555 DEBUG Processing 341/851 atomic regions from SNP 102041 to 102641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,590 DEBUG Processing 348/833 atomic regions from SNP 104127 to 104727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,591 DEBUG Processing 174/352 atomic regions from SNP 51939 to 52539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,612 DEBUG Processing 129/630 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,703 DEBUG Processing 260/996 atomic regions from SNP 77917 to 78517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,731 DEBUG Processing 237/1111 atomic regions from SNP 70915 to 71515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,769 DEBUG Processing 342/851 atomic regions from SNP 102341 to 102941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,801 DEBUG Processing 349/833 atomic regions from SNP 104427 to 105027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,802 DEBUG Processing 175/352 atomic regions from SNP 52239 to 52839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,834 DEBUG Processing 130/630 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,947 DEBUG Processing 261/996 atomic regions from SNP 78217 to 78817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,976 DEBUG Processing 238/1111 atomic regions from SNP 71215 to 71815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,985 DEBUG Processing 343/851 atomic regions from SNP 102641 to 103241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,013 DEBUG Processing 176/352 atomic regions from SNP 52539 to 53139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,013 DEBUG Processing 350/833 atomic regions from SNP 104727 to 105327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,052 DEBUG Processing 131/630 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,193 DEBUG Processing 262/996 atomic regions from SNP 78517 to 79117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,204 DEBUG Processing 344/851 atomic regions from SNP 102941 to 103541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,229 DEBUG Processing 239/1111 atomic regions from SNP 71515 to 72115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,231 DEBUG Processing 351/833 atomic regions from SNP 105027 to 105627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,235 DEBUG Processing 177/352 atomic regions from SNP 52839 to 53439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,279 DEBUG Processing 132/630 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,422 DEBUG Processing 345/851 atomic regions from SNP 103241 to 103841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,441 DEBUG Processing 263/996 atomic regions from SNP 78817 to 79417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,447 DEBUG Processing 352/833 atomic regions from SNP 105327 to 105927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,449 DEBUG Processing 178/352 atomic regions from SNP 53139 to 53739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,480 DEBUG Processing 240/1111 atomic regions from SNP 71815 to 72415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,496 DEBUG Processing 133/630 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,637 DEBUG Processing 346/851 atomic regions from SNP 103541 to 104141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,658 DEBUG Processing 179/352 atomic regions from SNP 53439 to 54039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,659 DEBUG Processing 353/833 atomic regions from SNP 105627 to 106227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,684 DEBUG Processing 264/996 atomic regions from SNP 79117 to 79717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,711 DEBUG Processing 134/630 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,724 DEBUG Processing 241/1111 atomic regions from SNP 72115 to 72715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,849 DEBUG Processing 347/851 atomic regions from SNP 103841 to 104441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,862 DEBUG Processing 180/352 atomic regions from SNP 53739 to 54339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,867 DEBUG Processing 354/833 atomic regions from SNP 105927 to 106527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,923 DEBUG Processing 265/996 atomic regions from SNP 79417 to 80017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,923 DEBUG Processing 135/630 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,967 DEBUG Processing 242/1111 atomic regions from SNP 72415 to 73015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,062 DEBUG Processing 348/851 atomic regions from SNP 104141 to 104741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,066 DEBUG Processing 181/352 atomic regions from SNP 54039 to 54639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,075 DEBUG Processing 355/833 atomic regions from SNP 106227 to 106827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,140 DEBUG Processing 136/630 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,164 DEBUG Processing 266/996 atomic regions from SNP 79717 to 80317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,209 DEBUG Processing 243/1111 atomic regions from SNP 72715 to 73315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,271 DEBUG Processing 182/352 atomic regions from SNP 54339 to 54939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,274 DEBUG Processing 349/851 atomic regions from SNP 104441 to 105041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,285 DEBUG Processing 356/833 atomic regions from SNP 106527 to 107127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,354 DEBUG Processing 137/630 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,403 DEBUG Processing 267/996 atomic regions from SNP 80017 to 80617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,452 DEBUG Processing 244/1111 atomic regions from SNP 73015 to 73615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,475 DEBUG Processing 183/352 atomic regions from SNP 54639 to 55239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,493 DEBUG Processing 357/833 atomic regions from SNP 106827 to 107427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,493 DEBUG Processing 350/851 atomic regions from SNP 104741 to 105341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,565 DEBUG Processing 138/630 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,641 DEBUG Processing 268/996 atomic regions from SNP 80317 to 80917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,680 DEBUG Processing 184/352 atomic regions from SNP 54939 to 55539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,698 DEBUG Processing 245/1111 atomic regions from SNP 73315 to 73915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,703 DEBUG Processing 358/833 atomic regions from SNP 107127 to 107727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,725 DEBUG Processing 351/851 atomic regions from SNP 105041 to 105641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,779 DEBUG Processing 139/630 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,882 DEBUG Processing 269/996 atomic regions from SNP 80617 to 81217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,889 DEBUG Processing 185/352 atomic regions from SNP 55239 to 55839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,918 DEBUG Processing 359/833 atomic regions from SNP 107427 to 108027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,945 DEBUG Processing 246/1111 atomic regions from SNP 73615 to 74215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,947 DEBUG Processing 352/851 atomic regions from SNP 105341 to 105941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,993 DEBUG Processing 140/630 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,098 DEBUG Processing 186/352 atomic regions from SNP 55539 to 56139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,124 DEBUG Processing 270/996 atomic regions from SNP 80917 to 81517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,132 DEBUG Processing 360/833 atomic regions from SNP 107727 to 108327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,164 DEBUG Processing 353/851 atomic regions from SNP 105641 to 106241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,193 DEBUG Processing 247/1111 atomic regions from SNP 73915 to 74515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,208 DEBUG Processing 141/630 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,306 DEBUG Processing 187/352 atomic regions from SNP 55839 to 56439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,342 DEBUG Processing 361/833 atomic regions from SNP 108027 to 108627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,365 DEBUG Processing 271/996 atomic regions from SNP 81217 to 81817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,376 DEBUG Processing 354/851 atomic regions from SNP 105941 to 106541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,421 DEBUG Processing 142/630 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,435 DEBUG Processing 248/1111 atomic regions from SNP 74215 to 74815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,510 DEBUG Processing 188/352 atomic regions from SNP 56139 to 56739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,550 DEBUG Processing 362/833 atomic regions from SNP 108327 to 108927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,589 DEBUG Processing 355/851 atomic regions from SNP 106241 to 106841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,604 DEBUG Processing 272/996 atomic regions from SNP 81517 to 82117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,635 DEBUG Processing 143/630 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,676 DEBUG Processing 249/1111 atomic regions from SNP 74515 to 75115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,714 DEBUG Processing 189/352 atomic regions from SNP 56439 to 57039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,756 DEBUG Processing 363/833 atomic regions from SNP 108627 to 109227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,800 DEBUG Processing 356/851 atomic regions from SNP 106541 to 107141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,841 DEBUG Processing 273/996 atomic regions from SNP 81817 to 82417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,847 DEBUG Processing 144/630 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,915 DEBUG Processing 190/352 atomic regions from SNP 56739 to 57339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,915 DEBUG Processing 250/1111 atomic regions from SNP 74815 to 75415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,963 DEBUG Processing 364/833 atomic regions from SNP 108927 to 109527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,010 DEBUG Processing 357/851 atomic regions from SNP 106841 to 107441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,061 DEBUG Processing 145/630 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,078 DEBUG Processing 274/996 atomic regions from SNP 82117 to 82717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,120 DEBUG Processing 191/352 atomic regions from SNP 57039 to 57639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,158 DEBUG Processing 251/1111 atomic regions from SNP 75115 to 75715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,171 DEBUG Processing 365/833 atomic regions from SNP 109227 to 109827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,219 DEBUG Processing 358/851 atomic regions from SNP 107141 to 107741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,274 DEBUG Processing 146/630 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,321 DEBUG Processing 275/996 atomic regions from SNP 82417 to 83017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,336 DEBUG Processing 192/352 atomic regions from SNP 57339 to 57939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,381 DEBUG Processing 366/833 atomic regions from SNP 109527 to 110127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,404 DEBUG Processing 252/1111 atomic regions from SNP 75415 to 76015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,431 DEBUG Processing 359/851 atomic regions from SNP 107441 to 108041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,491 DEBUG Processing 147/630 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,564 DEBUG Processing 276/996 atomic regions from SNP 82717 to 83317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,572 DEBUG Processing 193/352 atomic regions from SNP 57639 to 58239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,600 DEBUG Processing 367/833 atomic regions from SNP 109827 to 110427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,645 DEBUG Processing 360/851 atomic regions from SNP 107741 to 108341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,655 DEBUG Processing 253/1111 atomic regions from SNP 75715 to 76315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,704 DEBUG Processing 148/630 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,776 DEBUG Processing 194/352 atomic regions from SNP 57939 to 58539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,803 DEBUG Processing 277/996 atomic regions from SNP 83017 to 83617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,807 DEBUG Processing 368/833 atomic regions from SNP 110127 to 110727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,855 DEBUG Processing 361/851 atomic regions from SNP 108041 to 108641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,900 DEBUG Processing 254/1111 atomic regions from SNP 76015 to 76615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,915 DEBUG Processing 149/630 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,980 DEBUG Processing 195/352 atomic regions from SNP 58239 to 58839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,015 DEBUG Processing 369/833 atomic regions from SNP 110427 to 111027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,039 DEBUG Processing 278/996 atomic regions from SNP 83317 to 83917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,066 DEBUG Processing 362/851 atomic regions from SNP 108341 to 108941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,128 DEBUG Processing 150/630 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,149 DEBUG Processing 255/1111 atomic regions from SNP 76315 to 76915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,185 DEBUG Processing 196/352 atomic regions from SNP 58539 to 59139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,225 DEBUG Processing 370/833 atomic regions from SNP 110727 to 111327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,276 DEBUG Processing 279/996 atomic regions from SNP 83617 to 84217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,277 DEBUG Processing 363/851 atomic regions from SNP 108641 to 109241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,341 DEBUG Processing 151/630 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,389 DEBUG Processing 197/352 atomic regions from SNP 58839 to 59439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,390 DEBUG Processing 256/1111 atomic regions from SNP 76615 to 77215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,432 DEBUG Processing 371/833 atomic regions from SNP 111027 to 111627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,487 DEBUG Processing 364/851 atomic regions from SNP 108941 to 109541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,514 DEBUG Processing 280/996 atomic regions from SNP 83917 to 84517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,552 DEBUG Processing 152/630 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,593 DEBUG Processing 198/352 atomic regions from SNP 59139 to 59739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,633 DEBUG Processing 257/1111 atomic regions from SNP 76915 to 77515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,639 DEBUG Processing 372/833 atomic regions from SNP 111327 to 111927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,695 DEBUG Processing 365/851 atomic regions from SNP 109241 to 109841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,748 DEBUG Processing 281/996 atomic regions from SNP 84217 to 84817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,764 DEBUG Processing 153/630 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,794 DEBUG Processing 199/352 atomic regions from SNP 59439 to 60039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,846 DEBUG Processing 373/833 atomic regions from SNP 111627 to 112227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,876 DEBUG Processing 258/1111 atomic regions from SNP 77215 to 77815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,904 DEBUG Processing 366/851 atomic regions from SNP 109541 to 110141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,975 DEBUG Processing 154/630 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,985 DEBUG Processing 282/996 atomic regions from SNP 84517 to 85117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,997 DEBUG Processing 200/352 atomic regions from SNP 59739 to 60339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,054 DEBUG Processing 374/833 atomic regions from SNP 111927 to 112527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,112 DEBUG Processing 367/851 atomic regions from SNP 109841 to 110441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,120 DEBUG Processing 259/1111 atomic regions from SNP 77515 to 78115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,187 DEBUG Processing 155/630 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,202 DEBUG Processing 201/352 atomic regions from SNP 60039 to 60639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,224 DEBUG Processing 283/996 atomic regions from SNP 84817 to 85417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,258 DEBUG Processing 375/833 atomic regions from SNP 112227 to 112827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,324 DEBUG Processing 368/851 atomic regions from SNP 110141 to 110741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,365 DEBUG Processing 260/1111 atomic regions from SNP 77815 to 78415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,410 DEBUG Processing 202/352 atomic regions from SNP 60339 to 60939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,410 DEBUG Processing 156/630 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,464 DEBUG Processing 284/996 atomic regions from SNP 85117 to 85717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,468 DEBUG Processing 376/833 atomic regions from SNP 112527 to 113127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,533 DEBUG Processing 369/851 atomic regions from SNP 110441 to 111041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,606 DEBUG Processing 261/1111 atomic regions from SNP 78115 to 78715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,617 DEBUG Processing 203/352 atomic regions from SNP 60639 to 61239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,627 DEBUG Processing 157/630 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,676 DEBUG Processing 377/833 atomic regions from SNP 112827 to 113427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,701 DEBUG Processing 285/996 atomic regions from SNP 85417 to 86017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,743 DEBUG Processing 370/851 atomic regions from SNP 110741 to 111341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,829 DEBUG Processing 204/352 atomic regions from SNP 60939 to 61539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,839 DEBUG Processing 158/630 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,848 DEBUG Processing 262/1111 atomic regions from SNP 78415 to 79015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,883 DEBUG Processing 378/833 atomic regions from SNP 113127 to 113727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,935 DEBUG Processing 286/996 atomic regions from SNP 85717 to 86317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,954 DEBUG Processing 371/851 atomic regions from SNP 111041 to 111641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,051 DEBUG Processing 159/630 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,055 DEBUG Processing 205/352 atomic regions from SNP 61239 to 61839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,091 DEBUG Processing 263/1111 atomic regions from SNP 78715 to 79315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,092 DEBUG Processing 379/833 atomic regions from SNP 113427 to 114027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,162 DEBUG Processing 372/851 atomic regions from SNP 111341 to 111941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,169 DEBUG Processing 287/996 atomic regions from SNP 86017 to 86617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,261 DEBUG Processing 206/352 atomic regions from SNP 61539 to 62139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,262 DEBUG Processing 160/630 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,299 DEBUG Processing 380/833 atomic regions from SNP 113727 to 114327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,335 DEBUG Processing 264/1111 atomic regions from SNP 79015 to 79615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,370 DEBUG Processing 373/851 atomic regions from SNP 111641 to 112241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,402 DEBUG Processing 288/996 atomic regions from SNP 86317 to 86917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,464 DEBUG Processing 207/352 atomic regions from SNP 61839 to 62439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,474 DEBUG Processing 161/630 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,510 DEBUG Processing 381/833 atomic regions from SNP 114027 to 114627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,580 DEBUG Processing 374/851 atomic regions from SNP 111941 to 112541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,582 DEBUG Processing 265/1111 atomic regions from SNP 79315 to 79915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,638 DEBUG Processing 289/996 atomic regions from SNP 86617 to 87217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,668 DEBUG Processing 208/352 atomic regions from SNP 62139 to 62739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,684 DEBUG Processing 162/630 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,722 DEBUG Processing 382/833 atomic regions from SNP 114327 to 114927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,793 DEBUG Processing 375/851 atomic regions from SNP 112241 to 112841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,826 DEBUG Processing 266/1111 atomic regions from SNP 79615 to 80215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,871 DEBUG Processing 209/352 atomic regions from SNP 62439 to 63039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,875 DEBUG Processing 290/996 atomic regions from SNP 86917 to 87517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,893 DEBUG Processing 163/630 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,932 DEBUG Processing 383/833 atomic regions from SNP 114627 to 115227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,003 DEBUG Processing 376/851 atomic regions from SNP 112541 to 113141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,066 DEBUG Processing 267/1111 atomic regions from SNP 79915 to 80515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,072 DEBUG Processing 210/352 atomic regions from SNP 62739 to 63339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,104 DEBUG Processing 164/630 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,111 DEBUG Processing 291/996 atomic regions from SNP 87217 to 87817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,138 DEBUG Processing 384/833 atomic regions from SNP 114927 to 115527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,210 DEBUG Processing 377/851 atomic regions from SNP 112841 to 113441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,274 DEBUG Processing 211/352 atomic regions from SNP 63039 to 63639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,308 DEBUG Processing 268/1111 atomic regions from SNP 80215 to 80815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,316 DEBUG Processing 165/630 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,345 DEBUG Processing 292/996 atomic regions from SNP 87517 to 88117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,348 DEBUG Processing 385/833 atomic regions from SNP 115227 to 115827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,416 DEBUG Processing 378/851 atomic regions from SNP 113141 to 113741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,474 DEBUG Processing 212/352 atomic regions from SNP 63339 to 63939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,526 DEBUG Processing 166/630 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,550 DEBUG Processing 269/1111 atomic regions from SNP 80515 to 81115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,558 DEBUG Processing 386/833 atomic regions from SNP 115527 to 116127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,579 DEBUG Processing 293/996 atomic regions from SNP 87817 to 88417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,623 DEBUG Processing 379/851 atomic regions from SNP 113441 to 114041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,672 DEBUG Processing 213/352 atomic regions from SNP 63639 to 64239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,735 DEBUG Processing 167/630 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,766 DEBUG Processing 387/833 atomic regions from SNP 115827 to 116427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,795 DEBUG Processing 270/1111 atomic regions from SNP 80815 to 81415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,811 DEBUG Processing 294/996 atomic regions from SNP 88117 to 88717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,832 DEBUG Processing 380/851 atomic regions from SNP 113741 to 114341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,868 DEBUG Processing 214/352 atomic regions from SNP 63939 to 64539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,943 DEBUG Processing 168/630 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,975 DEBUG Processing 388/833 atomic regions from SNP 116127 to 116727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,039 DEBUG Processing 271/1111 atomic regions from SNP 81115 to 81715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,043 DEBUG Processing 381/851 atomic regions from SNP 114041 to 114641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,045 DEBUG Processing 295/996 atomic regions from SNP 88417 to 89017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,068 DEBUG Processing 215/352 atomic regions from SNP 64239 to 64839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,151 DEBUG Processing 169/630 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,182 DEBUG Processing 389/833 atomic regions from SNP 116427 to 117027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,255 DEBUG Processing 382/851 atomic regions from SNP 114341 to 114941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,270 DEBUG Processing 216/352 atomic regions from SNP 64539 to 65139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,280 DEBUG Processing 296/996 atomic regions from SNP 88717 to 89317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,284 DEBUG Processing 272/1111 atomic regions from SNP 81415 to 82015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,357 DEBUG Processing 170/630 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,386 DEBUG Processing 390/833 atomic regions from SNP 116727 to 117327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,467 DEBUG Processing 383/851 atomic regions from SNP 114641 to 115241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,471 DEBUG Processing 217/352 atomic regions from SNP 64839 to 65439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,517 DEBUG Processing 297/996 atomic regions from SNP 89017 to 89617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,530 DEBUG Processing 273/1111 atomic regions from SNP 81715 to 82315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,573 DEBUG Processing 171/630 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,598 DEBUG Processing 391/833 atomic regions from SNP 117027 to 117627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,676 DEBUG Processing 218/352 atomic regions from SNP 65139 to 65739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,684 DEBUG Processing 384/851 atomic regions from SNP 114941 to 115541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,754 DEBUG Processing 298/996 atomic regions from SNP 89317 to 89917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,782 DEBUG Processing 172/630 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,787 DEBUG Processing 274/1111 atomic regions from SNP 82015 to 82615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,803 DEBUG Processing 392/833 atomic regions from SNP 117327 to 117927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,875 DEBUG Processing 219/352 atomic regions from SNP 65439 to 66039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,892 DEBUG Processing 385/851 atomic regions from SNP 115241 to 115841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,988 DEBUG Processing 299/996 atomic regions from SNP 89617 to 90217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,992 DEBUG Processing 173/630 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,010 DEBUG Processing 393/833 atomic regions from SNP 117627 to 118227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,055 DEBUG Processing 275/1111 atomic regions from SNP 82315 to 82915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,074 DEBUG Processing 220/352 atomic regions from SNP 65739 to 66339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,101 DEBUG Processing 386/851 atomic regions from SNP 115541 to 116141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,203 DEBUG Processing 174/630 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,217 DEBUG Processing 394/833 atomic regions from SNP 117927 to 118527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,223 DEBUG Processing 300/996 atomic regions from SNP 89917 to 90517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,271 DEBUG Processing 221/352 atomic regions from SNP 66039 to 66639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,303 DEBUG Processing 276/1111 atomic regions from SNP 82615 to 83215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,312 DEBUG Processing 387/851 atomic regions from SNP 115841 to 116441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,431 DEBUG Processing 175/630 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,438 DEBUG Processing 395/833 atomic regions from SNP 118227 to 118827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,472 DEBUG Processing 301/996 atomic regions from SNP 90217 to 90817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,489 DEBUG Processing 222/352 atomic regions from SNP 66339 to 66939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,529 DEBUG Processing 388/851 atomic regions from SNP 116141 to 116741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,550 DEBUG Processing 277/1111 atomic regions from SNP 82915 to 83515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,640 DEBUG Processing 176/630 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,648 DEBUG Processing 396/833 atomic regions from SNP 118527 to 119127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,691 DEBUG Processing 223/352 atomic regions from SNP 66639 to 67239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,709 DEBUG Processing 302/996 atomic regions from SNP 90517 to 91117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,742 DEBUG Processing 389/851 atomic regions from SNP 116441 to 117041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,797 DEBUG Processing 278/1111 atomic regions from SNP 83215 to 83815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,854 DEBUG Processing 177/630 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,857 DEBUG Processing 397/833 atomic regions from SNP 118827 to 119427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,894 DEBUG Processing 224/352 atomic regions from SNP 66939 to 67539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,945 DEBUG Processing 303/996 atomic regions from SNP 90817 to 91417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,951 DEBUG Processing 390/851 atomic regions from SNP 116741 to 117341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,041 DEBUG Processing 279/1111 atomic regions from SNP 83515 to 84115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,065 DEBUG Processing 398/833 atomic regions from SNP 119127 to 119727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,066 DEBUG Processing 178/630 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,100 DEBUG Processing 225/352 atomic regions from SNP 67239 to 67839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,166 DEBUG Processing 391/851 atomic regions from SNP 117041 to 117641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,183 DEBUG Processing 304/996 atomic regions from SNP 91117 to 91717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,272 DEBUG Processing 399/833 atomic regions from SNP 119427 to 120027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,276 DEBUG Processing 179/630 atomic regions from SNP 53578 to 54178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,286 DEBUG Processing 280/1111 atomic regions from SNP 83815 to 84415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,302 DEBUG Processing 226/352 atomic regions from SNP 67539 to 68139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,377 DEBUG Processing 392/851 atomic regions from SNP 117341 to 117941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,417 DEBUG Processing 305/996 atomic regions from SNP 91417 to 92017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,484 DEBUG Processing 400/833 atomic regions from SNP 119727 to 120327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,488 DEBUG Processing 180/630 atomic regions from SNP 53878 to 54478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,505 DEBUG Processing 227/352 atomic regions from SNP 67839 to 68439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,534 DEBUG Processing 281/1111 atomic regions from SNP 84115 to 84715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,592 DEBUG Processing 393/851 atomic regions from SNP 117641 to 118241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,653 DEBUG Processing 306/996 atomic regions from SNP 91717 to 92317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,699 DEBUG Processing 401/833 atomic regions from SNP 120027 to 120627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,703 DEBUG Processing 181/630 atomic regions from SNP 54178 to 54778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,711 DEBUG Processing 228/352 atomic regions from SNP 68139 to 68739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,786 DEBUG Processing 282/1111 atomic regions from SNP 84415 to 85015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,807 DEBUG Processing 394/851 atomic regions from SNP 117941 to 118541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,894 DEBUG Processing 307/996 atomic regions from SNP 92017 to 92617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,915 DEBUG Processing 402/833 atomic regions from SNP 120327 to 120927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,919 DEBUG Processing 182/630 atomic regions from SNP 54478 to 55078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,924 DEBUG Processing 229/352 atomic regions from SNP 68439 to 69039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,027 DEBUG Processing 395/851 atomic regions from SNP 118241 to 118841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,039 DEBUG Processing 283/1111 atomic regions from SNP 84715 to 85315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,136 DEBUG Processing 230/352 atomic regions from SNP 68739 to 69339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,136 DEBUG Processing 403/833 atomic regions from SNP 120627 to 121227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,138 DEBUG Processing 183/630 atomic regions from SNP 54778 to 55378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,138 DEBUG Processing 308/996 atomic regions from SNP 92317 to 92917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,255 DEBUG Processing 396/851 atomic regions from SNP 118541 to 119141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,299 DEBUG Processing 284/1111 atomic regions from SNP 85015 to 85615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,350 DEBUG Processing 231/352 atomic regions from SNP 69039 to 69639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,359 DEBUG Processing 184/630 atomic regions from SNP 55078 to 55678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,367 DEBUG Processing 404/833 atomic regions from SNP 120927 to 121527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,385 DEBUG Processing 309/996 atomic regions from SNP 92617 to 93217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,488 DEBUG Processing 397/851 atomic regions from SNP 118841 to 119441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,568 DEBUG Processing 285/1111 atomic regions from SNP 85315 to 85915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,569 DEBUG Processing 232/352 atomic regions from SNP 69339 to 69939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,584 DEBUG Processing 185/630 atomic regions from SNP 55378 to 55978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,607 DEBUG Processing 405/833 atomic regions from SNP 121227 to 121827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,637 DEBUG Processing 310/996 atomic regions from SNP 92917 to 93517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,719 DEBUG Processing 398/851 atomic regions from SNP 119141 to 119741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,786 DEBUG Processing 233/352 atomic regions from SNP 69639 to 70239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,807 DEBUG Processing 186/630 atomic regions from SNP 55678 to 56278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,832 DEBUG Processing 286/1111 atomic regions from SNP 85615 to 86215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,841 DEBUG Processing 406/833 atomic regions from SNP 121527 to 122127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,882 DEBUG Processing 311/996 atomic regions from SNP 93217 to 93817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,943 DEBUG Processing 399/851 atomic regions from SNP 119441 to 120041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,998 DEBUG Processing 234/352 atomic regions from SNP 69939 to 70539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,026 DEBUG Processing 187/630 atomic regions from SNP 55978 to 56578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,068 DEBUG Processing 407/833 atomic regions from SNP 121827 to 122427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,093 DEBUG Processing 287/1111 atomic regions from SNP 85915 to 86515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,122 DEBUG Processing 312/996 atomic regions from SNP 93517 to 94117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,168 DEBUG Processing 400/851 atomic regions from SNP 119741 to 120341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,204 DEBUG Processing 235/352 atomic regions from SNP 70239 to 70839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,241 DEBUG Processing 188/630 atomic regions from SNP 56278 to 56878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,289 DEBUG Processing 408/833 atomic regions from SNP 122127 to 122727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,353 DEBUG Processing 288/1111 atomic regions from SNP 86215 to 86815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,361 DEBUG Processing 313/996 atomic regions from SNP 93817 to 94417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,393 DEBUG Processing 401/851 atomic regions from SNP 120041 to 120641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,408 DEBUG Processing 236/352 atomic regions from SNP 70539 to 71139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,454 DEBUG Processing 189/630 atomic regions from SNP 56578 to 57178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,507 DEBUG Processing 409/833 atomic regions from SNP 122427 to 123027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,597 DEBUG Processing 314/996 atomic regions from SNP 94117 to 94717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,606 DEBUG Processing 289/1111 atomic regions from SNP 86515 to 87115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,607 DEBUG Processing 402/851 atomic regions from SNP 120341 to 120941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,614 DEBUG Processing 237/352 atomic regions from SNP 70839 to 71439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,665 DEBUG Processing 190/630 atomic regions from SNP 56878 to 57478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,716 DEBUG Processing 410/833 atomic regions from SNP 122727 to 123327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,820 DEBUG Processing 238/352 atomic regions from SNP 71139 to 71739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,836 DEBUG Processing 315/996 atomic regions from SNP 94417 to 95017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,836 DEBUG Processing 403/851 atomic regions from SNP 120641 to 121241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,857 DEBUG Processing 290/1111 atomic regions from SNP 86815 to 87415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,876 DEBUG Processing 191/630 atomic regions from SNP 57178 to 57778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,925 DEBUG Processing 411/833 atomic regions from SNP 123027 to 123627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,023 DEBUG Processing 239/352 atomic regions from SNP 71439 to 72039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,074 DEBUG Processing 316/996 atomic regions from SNP 94717 to 95317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,075 DEBUG Processing 404/851 atomic regions from SNP 120941 to 121541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,088 DEBUG Processing 192/630 atomic regions from SNP 57478 to 58078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,106 DEBUG Processing 291/1111 atomic regions from SNP 87115 to 87715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,141 DEBUG Processing 412/833 atomic regions from SNP 123327 to 123927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,228 DEBUG Processing 240/352 atomic regions from SNP 71739 to 72339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,290 DEBUG Processing 405/851 atomic regions from SNP 121241 to 121841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,302 DEBUG Processing 193/630 atomic regions from SNP 57778 to 58378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,314 DEBUG Processing 317/996 atomic regions from SNP 95017 to 95617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,352 DEBUG Processing 413/833 atomic regions from SNP 123627 to 124227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,374 DEBUG Processing 292/1111 atomic regions from SNP 87415 to 88015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,429 DEBUG Processing 241/352 atomic regions from SNP 72039 to 72639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,501 DEBUG Processing 406/851 atomic regions from SNP 121541 to 122141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,512 DEBUG Processing 194/630 atomic regions from SNP 58078 to 58678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,550 DEBUG Processing 318/996 atomic regions from SNP 95317 to 95917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,563 DEBUG Processing 414/833 atomic regions from SNP 123927 to 124527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,633 DEBUG Processing 242/352 atomic regions from SNP 72339 to 72939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,635 DEBUG Processing 293/1111 atomic regions from SNP 87715 to 88315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,716 DEBUG Processing 407/851 atomic regions from SNP 121841 to 122441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,725 DEBUG Processing 195/630 atomic regions from SNP 58378 to 58978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,775 DEBUG Processing 415/833 atomic regions from SNP 124227 to 124827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,790 DEBUG Processing 319/996 atomic regions from SNP 95617 to 96217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,851 DEBUG Processing 243/352 atomic regions from SNP 72639 to 73239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,882 DEBUG Processing 294/1111 atomic regions from SNP 88015 to 88615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,929 DEBUG Processing 408/851 atomic regions from SNP 122141 to 122741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,935 DEBUG Processing 196/630 atomic regions from SNP 58678 to 59278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,984 DEBUG Processing 416/833 atomic regions from SNP 124527 to 125127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,025 DEBUG Processing 320/996 atomic regions from SNP 95917 to 96517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,078 DEBUG Processing 244/352 atomic regions from SNP 72939 to 73539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,133 DEBUG Processing 295/1111 atomic regions from SNP 88315 to 88915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,150 DEBUG Processing 197/630 atomic regions from SNP 58978 to 59578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,154 DEBUG Processing 409/851 atomic regions from SNP 122441 to 123041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,208 DEBUG Processing 417/833 atomic regions from SNP 124827 to 125427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,266 DEBUG Processing 321/996 atomic regions from SNP 96217 to 96817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,294 DEBUG Processing 245/352 atomic regions from SNP 73239 to 73839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,369 DEBUG Processing 198/630 atomic regions from SNP 59278 to 59878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,381 DEBUG Processing 410/851 atomic regions from SNP 122741 to 123341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,395 DEBUG Processing 296/1111 atomic regions from SNP 88615 to 89215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,427 DEBUG Processing 418/833 atomic regions from SNP 125127 to 125727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,503 DEBUG Processing 246/352 atomic regions from SNP 73539 to 74139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,506 DEBUG Processing 322/996 atomic regions from SNP 96517 to 97117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,584 DEBUG Processing 199/630 atomic regions from SNP 59578 to 60178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,602 DEBUG Processing 411/851 atomic regions from SNP 123041 to 123641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,645 DEBUG Processing 419/833 atomic regions from SNP 125427 to 126027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,650 DEBUG Processing 297/1111 atomic regions from SNP 88915 to 89515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,710 DEBUG Processing 247/352 atomic regions from SNP 73839 to 74439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,748 DEBUG Processing 323/996 atomic regions from SNP 96817 to 97417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,799 DEBUG Processing 200/630 atomic regions from SNP 59878 to 60478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,824 DEBUG Processing 412/851 atomic regions from SNP 123341 to 123941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,864 DEBUG Processing 420/833 atomic regions from SNP 125727 to 126327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,902 DEBUG Processing 298/1111 atomic regions from SNP 89215 to 89815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,919 DEBUG Processing 248/352 atomic regions from SNP 74139 to 74739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,988 DEBUG Processing 324/996 atomic regions from SNP 97117 to 97717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,015 DEBUG Processing 201/630 atomic regions from SNP 60178 to 60778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,046 DEBUG Processing 413/851 atomic regions from SNP 123641 to 124241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,086 DEBUG Processing 421/833 atomic regions from SNP 126027 to 126627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,148 DEBUG Processing 249/352 atomic regions from SNP 74439 to 75039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,157 DEBUG Processing 299/1111 atomic regions from SNP 89515 to 90115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,229 DEBUG Processing 325/996 atomic regions from SNP 97417 to 98017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,230 DEBUG Processing 202/630 atomic regions from SNP 60478 to 61078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,268 DEBUG Processing 414/851 atomic regions from SNP 123941 to 124541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,303 DEBUG Processing 422/833 atomic regions from SNP 126327 to 126927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,365 DEBUG Processing 250/352 atomic regions from SNP 74739 to 75339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,410 DEBUG Processing 300/1111 atomic regions from SNP 89815 to 90415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,447 DEBUG Processing 203/630 atomic regions from SNP 60778 to 61378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,473 DEBUG Processing 326/996 atomic regions from SNP 97717 to 98317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,493 DEBUG Processing 415/851 atomic regions from SNP 124241 to 124841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,526 DEBUG Processing 423/833 atomic regions from SNP 126627 to 127227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,575 DEBUG Processing 251/352 atomic regions from SNP 75039 to 75639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,663 DEBUG Processing 204/630 atomic regions from SNP 61078 to 61678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,666 DEBUG Processing 301/1111 atomic regions from SNP 90115 to 90715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,718 DEBUG Processing 327/996 atomic regions from SNP 98017 to 98617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,723 DEBUG Processing 416/851 atomic regions from SNP 124541 to 125141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,751 DEBUG Processing 424/833 atomic regions from SNP 126927 to 127527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,783 DEBUG Processing 252/352 atomic regions from SNP 75339 to 75939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,877 DEBUG Processing 205/630 atomic regions from SNP 61378 to 61978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,921 DEBUG Processing 302/1111 atomic regions from SNP 90415 to 91015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,950 DEBUG Processing 417/851 atomic regions from SNP 124841 to 125441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,963 DEBUG Processing 328/996 atomic regions from SNP 98317 to 98917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,973 DEBUG Processing 425/833 atomic regions from SNP 127227 to 127827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,991 DEBUG Processing 253/352 atomic regions from SNP 75639 to 76239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,087 DEBUG Processing 206/630 atomic regions from SNP 61678 to 62278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,176 DEBUG Processing 418/851 atomic regions from SNP 125141 to 125741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,179 DEBUG Processing 303/1111 atomic regions from SNP 90715 to 91315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,198 DEBUG Processing 426/833 atomic regions from SNP 127527 to 128127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,201 DEBUG Processing 254/352 atomic regions from SNP 75939 to 76539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,205 DEBUG Processing 329/996 atomic regions from SNP 98617 to 99217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,294 DEBUG Processing 207/630 atomic regions from SNP 61978 to 62578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,400 DEBUG Processing 419/851 atomic regions from SNP 125441 to 126041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,411 DEBUG Processing 255/352 atomic regions from SNP 76239 to 76839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,420 DEBUG Processing 427/833 atomic regions from SNP 127827 to 128427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,436 DEBUG Processing 304/1111 atomic regions from SNP 91015 to 91615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,448 DEBUG Processing 330/996 atomic regions from SNP 98917 to 99517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,504 DEBUG Processing 208/630 atomic regions from SNP 62278 to 62878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,623 DEBUG Processing 420/851 atomic regions from SNP 125741 to 126341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,642 DEBUG Processing 256/352 atomic regions from SNP 76539 to 77139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,642 DEBUG Processing 428/833 atomic regions from SNP 128127 to 128727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,689 DEBUG Processing 305/1111 atomic regions from SNP 91315 to 91915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,691 DEBUG Processing 331/996 atomic regions from SNP 99217 to 99817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,715 DEBUG Processing 209/630 atomic regions from SNP 62578 to 63178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,838 DEBUG Processing 421/851 atomic regions from SNP 126041 to 126641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,858 DEBUG Processing 429/833 atomic regions from SNP 128427 to 129027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,877 DEBUG Processing 257/352 atomic regions from SNP 76839 to 77439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,927 DEBUG Processing 210/630 atomic regions from SNP 62878 to 63478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,931 DEBUG Processing 332/996 atomic regions from SNP 99517 to 100117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,941 DEBUG Processing 306/1111 atomic regions from SNP 91615 to 92215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,053 DEBUG Processing 422/851 atomic regions from SNP 126341 to 126941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,073 DEBUG Processing 430/833 atomic regions from SNP 128727 to 129327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,088 DEBUG Processing 258/352 atomic regions from SNP 77139 to 77739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,143 DEBUG Processing 211/630 atomic regions from SNP 63178 to 63778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,171 DEBUG Processing 333/996 atomic regions from SNP 99817 to 100417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,192 DEBUG Processing 307/1111 atomic regions from SNP 91915 to 92515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,271 DEBUG Processing 423/851 atomic regions from SNP 126641 to 127241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,287 DEBUG Processing 431/833 atomic regions from SNP 129027 to 129627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,296 DEBUG Processing 259/352 atomic regions from SNP 77439 to 78039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,355 DEBUG Processing 212/630 atomic regions from SNP 63478 to 64078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,408 DEBUG Processing 334/996 atomic regions from SNP 100117 to 100717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,445 DEBUG Processing 308/1111 atomic regions from SNP 92215 to 92815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,487 DEBUG Processing 424/851 atomic regions from SNP 126941 to 127541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,499 DEBUG Processing 260/352 atomic regions from SNP 77739 to 78339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,500 DEBUG Processing 432/833 atomic regions from SNP 129327 to 129927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,568 DEBUG Processing 213/630 atomic regions from SNP 63778 to 64378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,648 DEBUG Processing 335/996 atomic regions from SNP 100417 to 101017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,699 DEBUG Processing 309/1111 atomic regions from SNP 92515 to 93115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,710 DEBUG Processing 425/851 atomic regions from SNP 127241 to 127841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,710 DEBUG Processing 261/352 atomic regions from SNP 78039 to 78639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,721 DEBUG Processing 433/833 atomic regions from SNP 129627 to 130227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,786 DEBUG Processing 214/630 atomic regions from SNP 64078 to 64678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,891 DEBUG Processing 336/996 atomic regions from SNP 100717 to 101317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,919 DEBUG Processing 262/352 atomic regions from SNP 78339 to 78939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,933 DEBUG Processing 426/851 atomic regions from SNP 127541 to 128141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,939 DEBUG Processing 434/833 atomic regions from SNP 129927 to 130527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,956 DEBUG Processing 310/1111 atomic regions from SNP 92815 to 93415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,998 DEBUG Processing 215/630 atomic regions from SNP 64378 to 64978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,130 DEBUG Processing 263/352 atomic regions from SNP 78639 to 79239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,134 DEBUG Processing 337/996 atomic regions from SNP 101017 to 101617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,156 DEBUG Processing 427/851 atomic regions from SNP 127841 to 128441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,162 DEBUG Processing 435/833 atomic regions from SNP 130227 to 130827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,213 DEBUG Processing 311/1111 atomic regions from SNP 93115 to 93715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,218 DEBUG Processing 216/630 atomic regions from SNP 64678 to 65278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,336 DEBUG Processing 264/352 atomic regions from SNP 78939 to 79539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,375 DEBUG Processing 338/996 atomic regions from SNP 101317 to 101917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,377 DEBUG Processing 428/851 atomic regions from SNP 128141 to 128741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,380 DEBUG Processing 436/833 atomic regions from SNP 130527 to 131127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,433 DEBUG Processing 217/630 atomic regions from SNP 64978 to 65578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,482 DEBUG Processing 312/1111 atomic regions from SNP 93415 to 94015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,542 DEBUG Processing 265/352 atomic regions from SNP 79239 to 79839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,598 DEBUG Processing 429/851 atomic regions from SNP 128441 to 129041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,599 DEBUG Processing 437/833 atomic regions from SNP 130827 to 131427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,617 DEBUG Processing 339/996 atomic regions from SNP 101617 to 102217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,648 DEBUG Processing 218/630 atomic regions from SNP 65278 to 65878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,739 DEBUG Processing 313/1111 atomic regions from SNP 93715 to 94315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,748 DEBUG Processing 266/352 atomic regions from SNP 79539 to 80139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,818 DEBUG Processing 438/833 atomic regions from SNP 131127 to 131727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,831 DEBUG Processing 430/851 atomic regions from SNP 128741 to 129341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,863 DEBUG Processing 340/996 atomic regions from SNP 101917 to 102517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,864 DEBUG Processing 219/630 atomic regions from SNP 65578 to 66178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,951 DEBUG Processing 267/352 atomic regions from SNP 79839 to 80439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,989 DEBUG Processing 314/1111 atomic regions from SNP 94015 to 94615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,039 DEBUG Processing 439/833 atomic regions from SNP 131427 to 132027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,060 DEBUG Processing 431/851 atomic regions from SNP 129041 to 129641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,081 DEBUG Processing 220/630 atomic regions from SNP 65878 to 66478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,106 DEBUG Processing 341/996 atomic regions from SNP 102217 to 102817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,158 DEBUG Processing 268/352 atomic regions from SNP 80139 to 80739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,238 DEBUG Processing 315/1111 atomic regions from SNP 94315 to 94915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,256 DEBUG Processing 440/833 atomic regions from SNP 131727 to 132327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,292 DEBUG Processing 432/851 atomic regions from SNP 129341 to 129941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,295 DEBUG Processing 221/630 atomic regions from SNP 66178 to 66778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,346 DEBUG Processing 342/996 atomic regions from SNP 102517 to 103117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,361 DEBUG Processing 269/352 atomic regions from SNP 80439 to 81039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,473 DEBUG Processing 441/833 atomic regions from SNP 132027 to 132627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,491 DEBUG Processing 316/1111 atomic regions from SNP 94615 to 95215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,512 DEBUG Processing 222/630 atomic regions from SNP 66478 to 67078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,515 DEBUG Processing 433/851 atomic regions from SNP 129641 to 130241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,568 DEBUG Processing 270/352 atomic regions from SNP 80739 to 81339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,585 DEBUG Processing 343/996 atomic regions from SNP 102817 to 103417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,690 DEBUG Processing 442/833 atomic regions from SNP 132327 to 132927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,727 DEBUG Processing 223/630 atomic regions from SNP 66778 to 67378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,737 DEBUG Processing 434/851 atomic regions from SNP 129941 to 130541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,762 DEBUG Processing 317/1111 atomic regions from SNP 94915 to 95515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,787 DEBUG Processing 271/352 atomic regions from SNP 81039 to 81639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,826 DEBUG Processing 344/996 atomic regions from SNP 103117 to 103717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,906 DEBUG Processing 443/833 atomic regions from SNP 132627 to 133227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,943 DEBUG Processing 224/630 atomic regions from SNP 67078 to 67678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,959 DEBUG Processing 435/851 atomic regions from SNP 130241 to 130841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,998 DEBUG Processing 272/352 atomic regions from SNP 81339 to 81939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,024 DEBUG Processing 318/1111 atomic regions from SNP 95215 to 95815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,069 DEBUG Processing 345/996 atomic regions from SNP 103417 to 104017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,128 DEBUG Processing 444/833 atomic regions from SNP 132927 to 133527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,157 DEBUG Processing 225/630 atomic regions from SNP 67378 to 67978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,185 DEBUG Processing 436/851 atomic regions from SNP 130541 to 131141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,205 DEBUG Processing 273/352 atomic regions from SNP 81639 to 82239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,284 DEBUG Processing 319/1111 atomic regions from SNP 95515 to 96115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,309 DEBUG Processing 346/996 atomic regions from SNP 103717 to 104317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,348 DEBUG Processing 445/833 atomic regions from SNP 133227 to 133827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,372 DEBUG Processing 226/630 atomic regions from SNP 67678 to 68278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,410 DEBUG Processing 437/851 atomic regions from SNP 130841 to 131441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,415 DEBUG Processing 274/352 atomic regions from SNP 81939 to 82539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,544 DEBUG Processing 320/1111 atomic regions from SNP 95815 to 96415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,550 DEBUG Processing 347/996 atomic regions from SNP 104017 to 104617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,571 DEBUG Processing 446/833 atomic regions from SNP 133527 to 134127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,588 DEBUG Processing 227/630 atomic regions from SNP 67978 to 68578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,623 DEBUG Processing 275/352 atomic regions from SNP 82239 to 82839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,631 DEBUG Processing 438/851 atomic regions from SNP 131141 to 131741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,791 DEBUG Processing 348/996 atomic regions from SNP 104317 to 104917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,799 DEBUG Processing 447/833 atomic regions from SNP 133827 to 134427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,805 DEBUG Processing 228/630 atomic regions from SNP 68278 to 68878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,808 DEBUG Processing 321/1111 atomic regions from SNP 96115 to 96715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,834 DEBUG Processing 276/352 atomic regions from SNP 82539 to 83139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,860 DEBUG Processing 439/851 atomic regions from SNP 131441 to 132041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,026 DEBUG Processing 448/833 atomic regions from SNP 134127 to 134727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,027 DEBUG Processing 229/630 atomic regions from SNP 68578 to 69178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,037 DEBUG Processing 349/996 atomic regions from SNP 104617 to 105217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,048 DEBUG Processing 277/352 atomic regions from SNP 82839 to 83439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,082 DEBUG Processing 322/1111 atomic regions from SNP 96415 to 97015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,098 DEBUG Processing 440/851 atomic regions from SNP 131741 to 132341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,252 DEBUG Processing 230/630 atomic regions from SNP 68878 to 69478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,252 DEBUG Processing 449/833 atomic regions from SNP 134427 to 135027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,268 DEBUG Processing 278/352 atomic regions from SNP 83139 to 83739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,289 DEBUG Processing 350/996 atomic regions from SNP 104917 to 105517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,341 DEBUG Processing 441/851 atomic regions from SNP 132041 to 132641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,344 DEBUG Processing 323/1111 atomic regions from SNP 96715 to 97315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,470 DEBUG Processing 231/630 atomic regions from SNP 69178 to 69778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,472 DEBUG Processing 450/833 atomic regions from SNP 134727 to 135327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,480 DEBUG Processing 279/352 atomic regions from SNP 83439 to 84039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,535 DEBUG Processing 351/996 atomic regions from SNP 105217 to 105817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,576 DEBUG Processing 442/851 atomic regions from SNP 132341 to 132941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,593 DEBUG Processing 324/1111 atomic regions from SNP 97015 to 97615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,686 DEBUG Processing 451/833 atomic regions from SNP 135027 to 135627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,688 DEBUG Processing 232/630 atomic regions from SNP 69478 to 70078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,692 DEBUG Processing 280/352 atomic regions from SNP 83739 to 84339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,781 DEBUG Processing 352/996 atomic regions from SNP 105517 to 106117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,812 DEBUG Processing 443/851 atomic regions from SNP 132641 to 133241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,847 DEBUG Processing 325/1111 atomic regions from SNP 97315 to 97915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,901 DEBUG Processing 452/833 atomic regions from SNP 135327 to 135927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,904 DEBUG Processing 281/352 atomic regions from SNP 84039 to 84639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,907 DEBUG Processing 233/630 atomic regions from SNP 69778 to 70378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,025 DEBUG Processing 353/996 atomic regions from SNP 105817 to 106417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,032 DEBUG Processing 444/851 atomic regions from SNP 132941 to 133541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,101 DEBUG Processing 326/1111 atomic regions from SNP 97615 to 98215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,119 DEBUG Processing 282/352 atomic regions from SNP 84339 to 84939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,119 DEBUG Processing 453/833 atomic regions from SNP 135627 to 136227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,130 DEBUG Processing 234/630 atomic regions from SNP 70078 to 70678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,254 DEBUG Processing 445/851 atomic regions from SNP 133241 to 133841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,271 DEBUG Processing 354/996 atomic regions from SNP 106117 to 106717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,328 DEBUG Processing 283/352 atomic regions from SNP 84639 to 85239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,342 DEBUG Processing 454/833 atomic regions from SNP 135927 to 136527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,356 DEBUG Processing 235/630 atomic regions from SNP 70378 to 70978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,362 DEBUG Processing 327/1111 atomic regions from SNP 97915 to 98515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,482 DEBUG Processing 446/851 atomic regions from SNP 133541 to 134141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,511 DEBUG Processing 355/996 atomic regions from SNP 106417 to 107017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,536 DEBUG Processing 284/352 atomic regions from SNP 84939 to 85539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,564 DEBUG Processing 455/833 atomic regions from SNP 136227 to 136827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,571 DEBUG Processing 236/630 atomic regions from SNP 70678 to 71278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,618 DEBUG Processing 328/1111 atomic regions from SNP 98215 to 98815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,705 DEBUG Processing 447/851 atomic regions from SNP 133841 to 134441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,745 DEBUG Processing 285/352 atomic regions from SNP 85239 to 85839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,753 DEBUG Processing 356/996 atomic regions from SNP 106717 to 107317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,784 DEBUG Processing 456/833 atomic regions from SNP 136527 to 137127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,786 DEBUG Processing 237/630 atomic regions from SNP 70978 to 71578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,871 DEBUG Processing 329/1111 atomic regions from SNP 98515 to 99115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,926 DEBUG Processing 448/851 atomic regions from SNP 134141 to 134741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,953 DEBUG Processing 286/352 atomic regions from SNP 85539 to 86139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,993 DEBUG Processing 357/996 atomic regions from SNP 107017 to 107617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,001 DEBUG Processing 238/630 atomic regions from SNP 71278 to 71878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,001 DEBUG Processing 457/833 atomic regions from SNP 136827 to 137427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,126 DEBUG Processing 330/1111 atomic regions from SNP 98815 to 99415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,151 DEBUG Processing 449/851 atomic regions from SNP 134441 to 135041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,160 DEBUG Processing 287/352 atomic regions from SNP 85839 to 86439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,218 DEBUG Processing 239/630 atomic regions from SNP 71578 to 72178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,221 DEBUG Processing 458/833 atomic regions from SNP 137127 to 137727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,235 DEBUG Processing 358/996 atomic regions from SNP 107317 to 107917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,368 DEBUG Processing 288/352 atomic regions from SNP 86139 to 86739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,380 DEBUG Processing 450/851 atomic regions from SNP 134741 to 135341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,383 DEBUG Processing 331/1111 atomic regions from SNP 99115 to 99715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,432 DEBUG Processing 240/630 atomic regions from SNP 71878 to 72478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,446 DEBUG Processing 459/833 atomic regions from SNP 137427 to 138027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,476 DEBUG Processing 359/996 atomic regions from SNP 107617 to 108217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,573 DEBUG Processing 289/352 atomic regions from SNP 86439 to 87039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,605 DEBUG Processing 451/851 atomic regions from SNP 135041 to 135641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,638 DEBUG Processing 332/1111 atomic regions from SNP 99415 to 100015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,646 DEBUG Processing 241/630 atomic regions from SNP 72178 to 72778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,661 DEBUG Processing 460/833 atomic regions from SNP 137727 to 138327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,713 DEBUG Processing 360/996 atomic regions from SNP 107917 to 108517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,778 DEBUG Processing 290/352 atomic regions from SNP 86739 to 87339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,828 DEBUG Processing 452/851 atomic regions from SNP 135341 to 135941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,858 DEBUG Processing 242/630 atomic regions from SNP 72478 to 73078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,876 DEBUG Processing 461/833 atomic regions from SNP 138027 to 138627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,889 DEBUG Processing 333/1111 atomic regions from SNP 99715 to 100315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,952 DEBUG Processing 361/996 atomic regions from SNP 108217 to 108817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,983 DEBUG Processing 291/352 atomic regions from SNP 87039 to 87639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,071 DEBUG Processing 243/630 atomic regions from SNP 72778 to 73378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,074 DEBUG Processing 453/851 atomic regions from SNP 135641 to 136241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,092 DEBUG Processing 462/833 atomic regions from SNP 138327 to 138927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,142 DEBUG Processing 334/1111 atomic regions from SNP 100015 to 100615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,192 DEBUG Processing 362/996 atomic regions from SNP 108517 to 109117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,193 DEBUG Processing 292/352 atomic regions from SNP 87339 to 87939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,281 DEBUG Processing 244/630 atomic regions from SNP 73078 to 73678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,320 DEBUG Processing 463/833 atomic regions from SNP 138627 to 139227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,337 DEBUG Processing 454/851 atomic regions from SNP 135941 to 136541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,401 DEBUG Processing 293/352 atomic regions from SNP 87639 to 88239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,403 DEBUG Processing 335/1111 atomic regions from SNP 100315 to 100915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,431 DEBUG Processing 363/996 atomic regions from SNP 108817 to 109417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,489 DEBUG Processing 245/630 atomic regions from SNP 73378 to 73978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,538 DEBUG Processing 464/833 atomic regions from SNP 138927 to 139527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,595 DEBUG Processing 455/851 atomic regions from SNP 136241 to 136841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,610 DEBUG Processing 294/352 atomic regions from SNP 87939 to 88539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,653 DEBUG Processing 336/1111 atomic regions from SNP 100615 to 101215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,674 DEBUG Processing 364/996 atomic regions from SNP 109117 to 109717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,700 DEBUG Processing 246/630 atomic regions from SNP 73678 to 74278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,751 DEBUG Processing 465/833 atomic regions from SNP 139227 to 139827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,816 DEBUG Processing 295/352 atomic regions from SNP 88239 to 88839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,845 DEBUG Processing 456/851 atomic regions from SNP 136541 to 137141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,903 DEBUG Processing 337/1111 atomic regions from SNP 100915 to 101515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,909 DEBUG Processing 247/630 atomic regions from SNP 73978 to 74578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,914 DEBUG Processing 365/996 atomic regions from SNP 109417 to 110017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,961 DEBUG Processing 466/833 atomic regions from SNP 139527 to 140127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,022 DEBUG Processing 296/352 atomic regions from SNP 88539 to 89139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,100 DEBUG Processing 457/851 atomic regions from SNP 136841 to 137441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,123 DEBUG Processing 248/630 atomic regions from SNP 74278 to 74878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,154 DEBUG Processing 366/996 atomic regions from SNP 109717 to 110317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,168 DEBUG Processing 338/1111 atomic regions from SNP 101215 to 101815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,178 DEBUG Processing 467/833 atomic regions from SNP 139827 to 140427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,224 DEBUG Processing 297/352 atomic regions from SNP 88839 to 89439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,337 DEBUG Processing 249/630 atomic regions from SNP 74578 to 75178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,351 DEBUG Processing 458/851 atomic regions from SNP 137141 to 137741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,396 DEBUG Processing 367/996 atomic regions from SNP 110017 to 110617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,397 DEBUG Processing 468/833 atomic regions from SNP 140127 to 140727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,431 DEBUG Processing 298/352 atomic regions from SNP 89139 to 89739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,445 DEBUG Processing 339/1111 atomic regions from SNP 101515 to 102115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,551 DEBUG Processing 250/630 atomic regions from SNP 74878 to 75478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,597 DEBUG Processing 459/851 atomic regions from SNP 137441 to 138041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,614 DEBUG Processing 469/833 atomic regions from SNP 140427 to 141027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,636 DEBUG Processing 368/996 atomic regions from SNP 110317 to 110917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,637 DEBUG Processing 299/352 atomic regions from SNP 89439 to 90039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,699 DEBUG Processing 340/1111 atomic regions from SNP 101815 to 102415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,766 DEBUG Processing 251/630 atomic regions from SNP 75178 to 75778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,831 DEBUG Processing 470/833 atomic regions from SNP 140727 to 141327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,846 DEBUG Processing 300/352 atomic regions from SNP 89739 to 90339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,852 DEBUG Processing 460/851 atomic regions from SNP 137741 to 138341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,878 DEBUG Processing 369/996 atomic regions from SNP 110617 to 111217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,967 DEBUG Processing 341/1111 atomic regions from SNP 102115 to 102715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,977 DEBUG Processing 252/630 atomic regions from SNP 75478 to 76078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,042 DEBUG Processing 471/833 atomic regions from SNP 141027 to 141627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,052 DEBUG Processing 301/352 atomic regions from SNP 90039 to 90639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,103 DEBUG Processing 461/851 atomic regions from SNP 138041 to 138641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,121 DEBUG Processing 370/996 atomic regions from SNP 110917 to 111517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,191 DEBUG Processing 253/630 atomic regions from SNP 75778 to 76378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,215 DEBUG Processing 342/1111 atomic regions from SNP 102415 to 103015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,253 DEBUG Processing 472/833 atomic regions from SNP 141327 to 141927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,255 DEBUG Processing 302/352 atomic regions from SNP 90339 to 90939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,354 DEBUG Processing 462/851 atomic regions from SNP 138341 to 138941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,361 DEBUG Processing 371/996 atomic regions from SNP 111217 to 111817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,402 DEBUG Processing 254/630 atomic regions from SNP 76078 to 76678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,459 DEBUG Processing 303/352 atomic regions from SNP 90639 to 91239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,464 DEBUG Processing 343/1111 atomic regions from SNP 102715 to 103315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,465 DEBUG Processing 473/833 atomic regions from SNP 141627 to 142227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,601 DEBUG Processing 372/996 atomic regions from SNP 111517 to 112117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,607 DEBUG Processing 463/851 atomic regions from SNP 138641 to 139241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,614 DEBUG Processing 255/630 atomic regions from SNP 76378 to 76978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,662 DEBUG Processing 304/352 atomic regions from SNP 90939 to 91539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,675 DEBUG Processing 474/833 atomic regions from SNP 141927 to 142527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,710 DEBUG Processing 344/1111 atomic regions from SNP 103015 to 103615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,828 DEBUG Processing 256/630 atomic regions from SNP 76678 to 77278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,833 DEBUG Processing 464/851 atomic regions from SNP 138941 to 139541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,841 DEBUG Processing 373/996 atomic regions from SNP 111817 to 112417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,867 DEBUG Processing 305/352 atomic regions from SNP 91239 to 91839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,890 DEBUG Processing 475/833 atomic regions from SNP 142227 to 142827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,962 DEBUG Processing 345/1111 atomic regions from SNP 103315 to 103915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,041 DEBUG Processing 257/630 atomic regions from SNP 76978 to 77578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,066 DEBUG Processing 465/851 atomic regions from SNP 139241 to 139841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,071 DEBUG Processing 306/352 atomic regions from SNP 91539 to 92139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,080 DEBUG Processing 374/996 atomic regions from SNP 112117 to 112717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,099 DEBUG Processing 476/833 atomic regions from SNP 142527 to 143127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,206 DEBUG Processing 346/1111 atomic regions from SNP 103615 to 104215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,252 DEBUG Processing 258/630 atomic regions from SNP 77278 to 77878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,275 DEBUG Processing 307/352 atomic regions from SNP 91839 to 92439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,297 DEBUG Processing 466/851 atomic regions from SNP 139541 to 140141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,311 DEBUG Processing 477/833 atomic regions from SNP 142827 to 143427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,318 DEBUG Processing 375/996 atomic regions from SNP 112417 to 113017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,465 DEBUG Processing 259/630 atomic regions from SNP 77578 to 78178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,476 DEBUG Processing 347/1111 atomic regions from SNP 103915 to 104515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,481 DEBUG Processing 308/352 atomic regions from SNP 92139 to 92739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,525 DEBUG Processing 478/833 atomic regions from SNP 143127 to 143727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,543 DEBUG Processing 467/851 atomic regions from SNP 139841 to 140441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,554 DEBUG Processing 376/996 atomic regions from SNP 112717 to 113317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,674 DEBUG Processing 260/630 atomic regions from SNP 77878 to 78478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,685 DEBUG Processing 309/352 atomic regions from SNP 92439 to 93039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,731 DEBUG Processing 348/1111 atomic regions from SNP 104215 to 104815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,739 DEBUG Processing 479/833 atomic regions from SNP 143427 to 144027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,789 DEBUG Processing 377/996 atomic regions from SNP 113017 to 113617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,790 DEBUG Processing 468/851 atomic regions from SNP 140141 to 140741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,885 DEBUG Processing 261/630 atomic regions from SNP 78178 to 78778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,888 DEBUG Processing 310/352 atomic regions from SNP 92739 to 93339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,951 DEBUG Processing 480/833 atomic regions from SNP 143727 to 144327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,005 DEBUG Processing 349/1111 atomic regions from SNP 104515 to 105115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,020 DEBUG Processing 378/996 atomic regions from SNP 113317 to 113917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,032 DEBUG Processing 469/851 atomic regions from SNP 140441 to 141041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,090 DEBUG Processing 311/352 atomic regions from SNP 93039 to 93639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,094 DEBUG Processing 262/630 atomic regions from SNP 78478 to 79078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,161 DEBUG Processing 481/833 atomic regions from SNP 144027 to 144627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,254 DEBUG Processing 379/996 atomic regions from SNP 113617 to 114217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,273 DEBUG Processing 470/851 atomic regions from SNP 140741 to 141341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,291 DEBUG Processing 350/1111 atomic regions from SNP 104815 to 105415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,297 DEBUG Processing 312/352 atomic regions from SNP 93339 to 93939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,304 DEBUG Processing 263/630 atomic regions from SNP 78778 to 79378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,368 DEBUG Processing 482/833 atomic regions from SNP 144327 to 144927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,486 DEBUG Processing 471/851 atomic regions from SNP 141041 to 141641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,493 DEBUG Processing 380/996 atomic regions from SNP 113917 to 114517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,508 DEBUG Processing 313/352 atomic regions from SNP 93639 to 94239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,520 DEBUG Processing 264/630 atomic regions from SNP 79078 to 79678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,564 DEBUG Processing 351/1111 atomic regions from SNP 105115 to 105715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,577 DEBUG Processing 483/833 atomic regions from SNP 144627 to 145227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,702 DEBUG Processing 472/851 atomic regions from SNP 141341 to 141941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,717 DEBUG Processing 314/352 atomic regions from SNP 93939 to 94539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,737 DEBUG Processing 265/630 atomic regions from SNP 79378 to 79978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,737 DEBUG Processing 381/996 atomic regions from SNP 114217 to 114817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,805 DEBUG Processing 484/833 atomic regions from SNP 144927 to 145527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,810 DEBUG Processing 352/1111 atomic regions from SNP 105415 to 106015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,912 DEBUG Processing 473/851 atomic regions from SNP 141641 to 142241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,926 DEBUG Processing 315/352 atomic regions from SNP 94239 to 94839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,953 DEBUG Processing 266/630 atomic regions from SNP 79678 to 80278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,980 DEBUG Processing 382/996 atomic regions from SNP 114517 to 115117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,031 DEBUG Processing 485/833 atomic regions from SNP 145227 to 145827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,070 DEBUG Processing 353/1111 atomic regions from SNP 105715 to 106315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,124 DEBUG Processing 474/851 atomic regions from SNP 141941 to 142541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,132 DEBUG Processing 316/352 atomic regions from SNP 94539 to 95139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,166 DEBUG Processing 267/630 atomic regions from SNP 79978 to 80578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,217 DEBUG Processing 383/996 atomic regions from SNP 114817 to 115417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,246 DEBUG Processing 486/833 atomic regions from SNP 145527 to 146127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,336 DEBUG Processing 354/1111 atomic regions from SNP 106015 to 106615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,337 DEBUG Processing 317/352 atomic regions from SNP 94839 to 95439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,337 DEBUG Processing 475/851 atomic regions from SNP 142241 to 142841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,378 DEBUG Processing 268/630 atomic regions from SNP 80278 to 80878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,457 DEBUG Processing 487/833 atomic regions from SNP 145827 to 146427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,463 DEBUG Processing 384/996 atomic regions from SNP 115117 to 115717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,546 DEBUG Processing 318/352 atomic regions from SNP 95139 to 95739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,558 DEBUG Processing 476/851 atomic regions from SNP 142541 to 143141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,590 DEBUG Processing 355/1111 atomic regions from SNP 106315 to 106915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,592 DEBUG Processing 269/630 atomic regions from SNP 80578 to 81178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,669 DEBUG Processing 488/833 atomic regions from SNP 146127 to 146727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,723 DEBUG Processing 385/996 atomic regions from SNP 115417 to 116017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,756 DEBUG Processing 319/352 atomic regions from SNP 95439 to 96039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,780 DEBUG Processing 477/851 atomic regions from SNP 142841 to 143441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,810 DEBUG Processing 270/630 atomic regions from SNP 80878 to 81478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,847 DEBUG Processing 356/1111 atomic regions from SNP 106615 to 107215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,889 DEBUG Processing 489/833 atomic regions from SNP 146427 to 147027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,964 DEBUG Processing 386/996 atomic regions from SNP 115717 to 116317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,965 DEBUG Processing 320/352 atomic regions from SNP 95739 to 96339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,998 DEBUG Processing 478/851 atomic regions from SNP 143141 to 143741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,024 DEBUG Processing 271/630 atomic regions from SNP 81178 to 81778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,100 DEBUG Processing 357/1111 atomic regions from SNP 106915 to 107515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,103 DEBUG Processing 490/833 atomic regions from SNP 146727 to 147327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,175 DEBUG Processing 321/352 atomic regions from SNP 96039 to 96639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,206 DEBUG Processing 387/996 atomic regions from SNP 116017 to 116617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,216 DEBUG Processing 479/851 atomic regions from SNP 143441 to 144041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,241 DEBUG Processing 272/630 atomic regions from SNP 81478 to 82078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,327 DEBUG Processing 491/833 atomic regions from SNP 147027 to 147627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,351 DEBUG Processing 358/1111 atomic regions from SNP 107215 to 107815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,384 DEBUG Processing 322/352 atomic regions from SNP 96339 to 96939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,429 DEBUG Processing 480/851 atomic regions from SNP 143741 to 144341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,451 DEBUG Processing 388/996 atomic regions from SNP 116317 to 116917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,458 DEBUG Processing 273/630 atomic regions from SNP 81778 to 82378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,542 DEBUG Processing 492/833 atomic regions from SNP 147327 to 147927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,591 DEBUG Processing 323/352 atomic regions from SNP 96639 to 97239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,599 DEBUG Processing 359/1111 atomic regions from SNP 107515 to 108115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,647 DEBUG Processing 481/851 atomic regions from SNP 144041 to 144641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,678 DEBUG Processing 274/630 atomic regions from SNP 82078 to 82678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,698 DEBUG Processing 389/996 atomic regions from SNP 116617 to 117217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,755 DEBUG Processing 493/833 atomic regions from SNP 147627 to 148227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,795 DEBUG Processing 324/352 atomic regions from SNP 96939 to 97539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,847 DEBUG Processing 360/1111 atomic regions from SNP 107815 to 108415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,860 DEBUG Processing 482/851 atomic regions from SNP 144341 to 144941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,893 DEBUG Processing 275/630 atomic regions from SNP 82378 to 82978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,936 DEBUG Processing 390/996 atomic regions from SNP 116917 to 117517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,967 DEBUG Processing 494/833 atomic regions from SNP 147927 to 148527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,000 DEBUG Processing 325/352 atomic regions from SNP 97239 to 97839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,077 DEBUG Processing 483/851 atomic regions from SNP 144641 to 145241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,095 DEBUG Processing 361/1111 atomic regions from SNP 108115 to 108715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,105 DEBUG Processing 276/630 atomic regions from SNP 82678 to 83278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,176 DEBUG Processing 391/996 atomic regions from SNP 117217 to 117817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,186 DEBUG Processing 495/833 atomic regions from SNP 148227 to 148827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,208 DEBUG Processing 326/352 atomic regions from SNP 97539 to 98139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,298 DEBUG Processing 484/851 atomic regions from SNP 144941 to 145541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,323 DEBUG Processing 277/630 atomic regions from SNP 82978 to 83578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,352 DEBUG Processing 362/1111 atomic regions from SNP 108415 to 109015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,405 DEBUG Processing 496/833 atomic regions from SNP 148527 to 149127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,416 DEBUG Processing 327/352 atomic regions from SNP 97839 to 98439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,428 DEBUG Processing 392/996 atomic regions from SNP 117517 to 118117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,517 DEBUG Processing 485/851 atomic regions from SNP 145241 to 145841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,537 DEBUG Processing 278/630 atomic regions from SNP 83278 to 83878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,605 DEBUG Processing 363/1111 atomic regions from SNP 108715 to 109315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,625 DEBUG Processing 497/833 atomic regions from SNP 148827 to 149427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,625 DEBUG Processing 328/352 atomic regions from SNP 98139 to 98739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,675 DEBUG Processing 393/996 atomic regions from SNP 117817 to 118417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,739 DEBUG Processing 486/851 atomic regions from SNP 145541 to 146141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,753 DEBUG Processing 279/630 atomic regions from SNP 83578 to 84178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,835 DEBUG Processing 329/352 atomic regions from SNP 98439 to 99039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,847 DEBUG Processing 498/833 atomic regions from SNP 149127 to 149727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,864 DEBUG Processing 364/1111 atomic regions from SNP 109015 to 109615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,921 DEBUG Processing 394/996 atomic regions from SNP 118117 to 118717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,957 DEBUG Processing 487/851 atomic regions from SNP 145841 to 146441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,966 DEBUG Processing 280/630 atomic regions from SNP 83878 to 84478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,042 DEBUG Processing 330/352 atomic regions from SNP 98739 to 99339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,067 DEBUG Processing 499/833 atomic regions from SNP 149427 to 150027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,119 DEBUG Processing 365/1111 atomic regions from SNP 109315 to 109915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,172 DEBUG Processing 395/996 atomic regions from SNP 118417 to 119017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,178 DEBUG Processing 488/851 atomic regions from SNP 146141 to 146741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,183 DEBUG Processing 281/630 atomic regions from SNP 84178 to 84778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,252 DEBUG Processing 331/352 atomic regions from SNP 99039 to 99639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,284 DEBUG Processing 500/833 atomic regions from SNP 149727 to 150327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,375 DEBUG Processing 366/1111 atomic regions from SNP 109615 to 110215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,400 DEBUG Processing 282/630 atomic regions from SNP 84478 to 85078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,409 DEBUG Processing 489/851 atomic regions from SNP 146441 to 147041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,415 DEBUG Processing 396/996 atomic regions from SNP 118717 to 119317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,464 DEBUG Processing 332/352 atomic regions from SNP 99339 to 99939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,506 DEBUG Processing 501/833 atomic regions from SNP 150027 to 150627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,625 DEBUG Processing 283/630 atomic regions from SNP 84778 to 85378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,629 DEBUG Processing 367/1111 atomic regions from SNP 109915 to 110515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,659 DEBUG Processing 490/851 atomic regions from SNP 146741 to 147341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,664 DEBUG Processing 397/996 atomic regions from SNP 119017 to 119617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,688 DEBUG Processing 333/352 atomic regions from SNP 99639 to 100239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,725 DEBUG Processing 502/833 atomic regions from SNP 150327 to 150927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,842 DEBUG Processing 284/630 atomic regions from SNP 85078 to 85678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,882 DEBUG Processing 368/1111 atomic regions from SNP 110215 to 110815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,902 DEBUG Processing 491/851 atomic regions from SNP 147041 to 147641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,903 DEBUG Processing 334/352 atomic regions from SNP 99939 to 100539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,913 DEBUG Processing 398/996 atomic regions from SNP 119317 to 119917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,948 DEBUG Processing 503/833 atomic regions from SNP 150627 to 151227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,057 DEBUG Processing 285/630 atomic regions from SNP 85378 to 85978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,119 DEBUG Processing 335/352 atomic regions from SNP 100239 to 100839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,134 DEBUG Processing 369/1111 atomic regions from SNP 110515 to 111115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,160 DEBUG Processing 492/851 atomic regions from SNP 147341 to 147941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,163 DEBUG Processing 399/996 atomic regions from SNP 119617 to 120217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,168 DEBUG Processing 504/833 atomic regions from SNP 150927 to 151527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,270 DEBUG Processing 286/630 atomic regions from SNP 85678 to 86278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,335 DEBUG Processing 336/352 atomic regions from SNP 100539 to 101139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,392 DEBUG Processing 370/1111 atomic regions from SNP 110815 to 111415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,392 DEBUG Processing 505/833 atomic regions from SNP 151227 to 151827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,411 DEBUG Processing 400/996 atomic regions from SNP 119917 to 120517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,422 DEBUG Processing 493/851 atomic regions from SNP 147641 to 148241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,485 DEBUG Processing 287/630 atomic regions from SNP 85978 to 86578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,551 DEBUG Processing 337/352 atomic regions from SNP 100839 to 101439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,613 DEBUG Processing 506/833 atomic regions from SNP 151527 to 152127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,649 DEBUG Processing 371/1111 atomic regions from SNP 111115 to 111715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,655 DEBUG Processing 401/996 atomic regions from SNP 120217 to 120817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,679 DEBUG Processing 494/851 atomic regions from SNP 147941 to 148541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,699 DEBUG Processing 288/630 atomic regions from SNP 86278 to 86878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,761 DEBUG Processing 338/352 atomic regions from SNP 101139 to 101739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,834 DEBUG Processing 507/833 atomic regions from SNP 151827 to 152427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,897 DEBUG Processing 402/996 atomic regions from SNP 120517 to 121117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,905 DEBUG Processing 372/1111 atomic regions from SNP 111415 to 112015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,914 DEBUG Processing 289/630 atomic regions from SNP 86578 to 87178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,915 DEBUG Processing 495/851 atomic regions from SNP 148241 to 148841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,967 DEBUG Processing 339/352 atomic regions from SNP 101439 to 102039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,048 DEBUG Processing 508/833 atomic regions from SNP 152127 to 152727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,131 DEBUG Processing 290/630 atomic regions from SNP 86878 to 87478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,138 DEBUG Processing 403/996 atomic regions from SNP 120817 to 121417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,157 DEBUG Processing 373/1111 atomic regions from SNP 111715 to 112315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,160 DEBUG Processing 496/851 atomic regions from SNP 148541 to 149141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,177 DEBUG Processing 340/352 atomic regions from SNP 101739 to 102339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,263 DEBUG Processing 509/833 atomic regions from SNP 152427 to 153027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,348 DEBUG Processing 291/630 atomic regions from SNP 87178 to 87778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,381 DEBUG Processing 404/996 atomic regions from SNP 121117 to 121717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,388 DEBUG Processing 341/352 atomic regions from SNP 102039 to 102639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,416 DEBUG Processing 374/1111 atomic regions from SNP 112015 to 112615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,417 DEBUG Processing 497/851 atomic regions from SNP 148841 to 149441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,486 DEBUG Processing 510/833 atomic regions from SNP 152727 to 153327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,561 DEBUG Processing 292/630 atomic regions from SNP 87478 to 88078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,597 DEBUG Processing 342/352 atomic regions from SNP 102339 to 102939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,642 DEBUG Processing 405/996 atomic regions from SNP 121417 to 122017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,673 DEBUG Processing 375/1111 atomic regions from SNP 112315 to 112915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,676 DEBUG Processing 498/851 atomic regions from SNP 149141 to 149741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,706 DEBUG Processing 511/833 atomic regions from SNP 153027 to 153627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,770 DEBUG Processing 293/630 atomic regions from SNP 87778 to 88378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,802 DEBUG Processing 343/352 atomic regions from SNP 102639 to 103239 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,884 DEBUG Processing 406/996 atomic regions from SNP 121717 to 122317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,930 DEBUG Processing 376/1111 atomic regions from SNP 112615 to 113215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,930 DEBUG Processing 512/833 atomic regions from SNP 153327 to 153927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,932 DEBUG Processing 499/851 atomic regions from SNP 149441 to 150041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,984 DEBUG Processing 294/630 atomic regions from SNP 88078 to 88678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,010 DEBUG Processing 344/352 atomic regions from SNP 102939 to 103539 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,130 DEBUG Processing 407/996 atomic regions from SNP 122017 to 122617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,158 DEBUG Processing 513/833 atomic regions from SNP 153627 to 154227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,191 DEBUG Processing 377/1111 atomic regions from SNP 112915 to 113515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,192 DEBUG Processing 500/851 atomic regions from SNP 149741 to 150341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,197 DEBUG Processing 295/630 atomic regions from SNP 88378 to 88978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,216 DEBUG Processing 345/352 atomic regions from SNP 103239 to 103839 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,371 DEBUG Processing 408/996 atomic regions from SNP 122317 to 122917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,377 DEBUG Processing 514/833 atomic regions from SNP 153927 to 154527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,412 DEBUG Processing 296/630 atomic regions from SNP 88678 to 89278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,422 DEBUG Processing 346/352 atomic regions from SNP 103539 to 104139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,445 DEBUG Processing 378/1111 atomic regions from SNP 113215 to 113815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,449 DEBUG Processing 501/851 atomic regions from SNP 150041 to 150641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,594 DEBUG Processing 515/833 atomic regions from SNP 154227 to 154827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,615 DEBUG Processing 409/996 atomic regions from SNP 122617 to 123217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,631 DEBUG Processing 297/630 atomic regions from SNP 88978 to 89578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,636 DEBUG Processing 347/352 atomic regions from SNP 103839 to 104439 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,701 DEBUG Processing 379/1111 atomic regions from SNP 113515 to 114115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,710 DEBUG Processing 502/851 atomic regions from SNP 150341 to 150941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,809 DEBUG Processing 516/833 atomic regions from SNP 154527 to 155127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,847 DEBUG Processing 348/352 atomic regions from SNP 104139 to 104739 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,849 DEBUG Processing 298/630 atomic regions from SNP 89278 to 89878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,887 DEBUG Processing 410/996 atomic regions from SNP 122917 to 123517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,936 DEBUG Processing 503/851 atomic regions from SNP 150641 to 151241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,946 DEBUG Processing 380/1111 atomic regions from SNP 113815 to 114415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,019 DEBUG Processing 517/833 atomic regions from SNP 154827 to 155427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,052 DEBUG Processing 349/352 atomic regions from SNP 104439 to 105039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,062 DEBUG Processing 299/630 atomic regions from SNP 89578 to 90178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,139 DEBUG Processing 411/996 atomic regions from SNP 123217 to 123817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,153 DEBUG Processing 504/851 atomic regions from SNP 150941 to 151541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,193 DEBUG Processing 381/1111 atomic regions from SNP 114115 to 114715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,237 DEBUG Processing 518/833 atomic regions from SNP 155127 to 155727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,261 DEBUG Processing 350/352 atomic regions from SNP 104739 to 105339 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,277 DEBUG Processing 300/630 atomic regions from SNP 89878 to 90478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,377 DEBUG Processing 412/996 atomic regions from SNP 123517 to 124117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,386 DEBUG Processing 505/851 atomic regions from SNP 151241 to 151841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,440 DEBUG Processing 382/1111 atomic regions from SNP 114415 to 115015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,455 DEBUG Processing 519/833 atomic regions from SNP 155427 to 156027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,466 DEBUG Processing 351/352 atomic regions from SNP 105039 to 105639 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,489 DEBUG Processing 301/630 atomic regions from SNP 90178 to 90778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,606 DEBUG Processing 506/851 atomic regions from SNP 151541 to 152141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,617 DEBUG Processing 413/996 atomic regions from SNP 123817 to 124417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,674 DEBUG Processing 520/833 atomic regions from SNP 155727 to 156327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,675 DEBUG Processing 352/352 atomic regions from SNP 105339 to 105939 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,692 DEBUG Processing 383/1111 atomic regions from SNP 114715 to 115315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,702 DEBUG Processing 302/630 atomic regions from SNP 90478 to 91078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,785 DEBUG Unique SNPs positions in subchromosome 5: 105940 2025-01-31 09:42:50,822 DEBUG Processing 507/851 atomic regions from SNP 151841 to 152441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,856 DEBUG Processing 414/996 atomic regions from SNP 124117 to 124717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,916 DEBUG Processing 303/630 atomic regions from SNP 90778 to 91378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,919 DEBUG Processing 521/833 atomic regions from SNP 156027 to 156627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,919 DEBUG Subchromosome time: 85.8738812879892, subchromosome SNPs: 105940 2025-01-31 09:42:50,935 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:50,949 DEBUG Processing 384/1111 atomic regions from SNP 115015 to 115615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,063 DEBUG Processing 508/851 atomic regions from SNP 152141 to 152741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,095 DEBUG Processing 415/996 atomic regions from SNP 124417 to 125017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,129 DEBUG Processing 304/630 atomic regions from SNP 91078 to 91678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,142 DEBUG Processing 522/833 atomic regions from SNP 156327 to 156927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,200 DEBUG Processing 385/1111 atomic regions from SNP 115315 to 115915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,286 DEBUG Processing 509/851 atomic regions from SNP 152441 to 153041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,332 DEBUG Processing 416/996 atomic regions from SNP 124717 to 125317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,340 DEBUG Processing 305/630 atomic regions from SNP 91378 to 91978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,355 DEBUG Processing 523/833 atomic regions from SNP 156627 to 157227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,447 DEBUG Processing 386/1111 atomic regions from SNP 115615 to 116215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,511 DEBUG Processing 510/851 atomic regions from SNP 152741 to 153341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,554 DEBUG Processing 306/630 atomic regions from SNP 91678 to 92278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,569 DEBUG Processing 524/833 atomic regions from SNP 156927 to 157527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,572 DEBUG Processing 417/996 atomic regions from SNP 125017 to 125617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,691 DEBUG Processing 387/1111 atomic regions from SNP 115915 to 116515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,735 DEBUG Processing 511/851 atomic regions from SNP 153041 to 153641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,769 DEBUG Processing 307/630 atomic regions from SNP 91978 to 92578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,782 DEBUG Processing 525/833 atomic regions from SNP 157227 to 157827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,811 DEBUG Processing 418/996 atomic regions from SNP 125317 to 125917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,940 DEBUG Processing 388/1111 atomic regions from SNP 116215 to 116815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,954 DEBUG Processing 512/851 atomic regions from SNP 153341 to 153941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,986 DEBUG Processing 308/630 atomic regions from SNP 92278 to 92878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,000 DEBUG Processing 526/833 atomic regions from SNP 157527 to 158127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,052 DEBUG Processing 419/996 atomic regions from SNP 125617 to 126217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,177 DEBUG Processing 513/851 atomic regions from SNP 153641 to 154241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,192 DEBUG Processing 389/1111 atomic regions from SNP 116515 to 117115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,197 DEBUG Processing 309/630 atomic regions from SNP 92578 to 93178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,219 DEBUG Processing 527/833 atomic regions from SNP 157827 to 158427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,290 DEBUG Processing 420/996 atomic regions from SNP 125917 to 126517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,400 DEBUG Processing 514/851 atomic regions from SNP 153941 to 154541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,413 DEBUG Processing 310/630 atomic regions from SNP 92878 to 93478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,442 DEBUG Processing 528/833 atomic regions from SNP 158127 to 158727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,449 DEBUG Processing 390/1111 atomic regions from SNP 116815 to 117415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,553 DEBUG Processing 421/996 atomic regions from SNP 126217 to 126817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,616 DEBUG Processing 515/851 atomic regions from SNP 154241 to 154841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,624 DEBUG Processing 311/630 atomic regions from SNP 93178 to 93778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,655 DEBUG Processing 529/833 atomic regions from SNP 158427 to 159027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,698 DEBUG Processing 391/1111 atomic regions from SNP 117115 to 117715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,809 DEBUG Processing 422/996 atomic regions from SNP 126517 to 127117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,834 DEBUG Processing 516/851 atomic regions from SNP 154541 to 155141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,836 DEBUG Processing 312/630 atomic regions from SNP 93478 to 94078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,871 DEBUG Processing 530/833 atomic regions from SNP 158727 to 159327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,943 DEBUG Processing 392/1111 atomic regions from SNP 117415 to 118015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,050 DEBUG Processing 313/630 atomic regions from SNP 93778 to 94378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,051 DEBUG Processing 517/851 atomic regions from SNP 154841 to 155441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,051 DEBUG Processing 423/996 atomic regions from SNP 126817 to 127417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,086 DEBUG Processing 531/833 atomic regions from SNP 159027 to 159627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,191 DEBUG Processing 393/1111 atomic regions from SNP 117715 to 118315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,264 DEBUG Processing 314/630 atomic regions from SNP 94078 to 94678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,270 DEBUG Processing 518/851 atomic regions from SNP 155141 to 155741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,291 DEBUG Processing 424/996 atomic regions from SNP 127117 to 127717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,301 DEBUG Processing 532/833 atomic regions from SNP 159327 to 159927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,443 DEBUG Processing 394/1111 atomic regions from SNP 118015 to 118615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,475 DEBUG Processing 315/630 atomic regions from SNP 94378 to 94978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,486 DEBUG Processing 519/851 atomic regions from SNP 155441 to 156041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,515 DEBUG Processing 533/833 atomic regions from SNP 159627 to 160227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,529 DEBUG Processing 425/996 atomic regions from SNP 127417 to 128017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,695 DEBUG Processing 316/630 atomic regions from SNP 94678 to 95278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,705 DEBUG Processing 520/851 atomic regions from SNP 155741 to 156341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,721 DEBUG Processing 395/1111 atomic regions from SNP 118315 to 118915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,732 DEBUG Processing 534/833 atomic regions from SNP 159927 to 160527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,770 DEBUG Processing 426/996 atomic regions from SNP 127717 to 128317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,911 DEBUG Processing 317/630 atomic regions from SNP 94978 to 95578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,922 DEBUG Processing 521/851 atomic regions from SNP 156041 to 156641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,948 DEBUG Processing 535/833 atomic regions from SNP 160227 to 160827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,974 DEBUG Processing 396/1111 atomic regions from SNP 118615 to 119215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,010 DEBUG Processing 427/996 atomic regions from SNP 128017 to 128617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,122 DEBUG Processing 318/630 atomic regions from SNP 95278 to 95878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,141 DEBUG Processing 522/851 atomic regions from SNP 156341 to 156941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,164 DEBUG Processing 536/833 atomic regions from SNP 160527 to 161127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,226 DEBUG Processing 397/1111 atomic regions from SNP 118915 to 119515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,246 DEBUG Processing 428/996 atomic regions from SNP 128317 to 128917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,335 DEBUG Processing 319/630 atomic regions from SNP 95578 to 96178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,361 DEBUG Processing 523/851 atomic regions from SNP 156641 to 157241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,379 DEBUG Processing 537/833 atomic regions from SNP 160827 to 161427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,472 DEBUG Processing 398/1111 atomic regions from SNP 119215 to 119815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,485 DEBUG Processing 429/996 atomic regions from SNP 128617 to 129217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,544 DEBUG Processing 320/630 atomic regions from SNP 95878 to 96478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,591 DEBUG Processing 538/833 atomic regions from SNP 161127 to 161727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,594 DEBUG Processing 524/851 atomic regions from SNP 156941 to 157541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,715 DEBUG Processing 399/1111 atomic regions from SNP 119515 to 120115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,724 DEBUG Processing 430/996 atomic regions from SNP 128917 to 129517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,756 DEBUG Processing 321/630 atomic regions from SNP 96178 to 96778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,802 DEBUG Processing 539/833 atomic regions from SNP 161427 to 162027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,815 DEBUG Processing 525/851 atomic regions from SNP 157241 to 157841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,957 DEBUG Processing 400/1111 atomic regions from SNP 119815 to 120415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,961 DEBUG Processing 431/996 atomic regions from SNP 129217 to 129817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,967 DEBUG Processing 322/630 atomic regions from SNP 96478 to 97078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,020 DEBUG Processing 540/833 atomic regions from SNP 161727 to 162327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,040 DEBUG Processing 526/851 atomic regions from SNP 157541 to 158141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,182 DEBUG Processing 323/630 atomic regions from SNP 96778 to 97378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,203 DEBUG Processing 432/996 atomic regions from SNP 129517 to 130117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,206 DEBUG Processing 401/1111 atomic regions from SNP 120115 to 120715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,266 DEBUG Processing 541/833 atomic regions from SNP 162027 to 162627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,280 DEBUG Processing 527/851 atomic regions from SNP 157841 to 158441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,395 DEBUG Processing 324/630 atomic regions from SNP 97078 to 97678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,443 DEBUG Processing 433/996 atomic regions from SNP 129817 to 130417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,454 DEBUG Processing 402/1111 atomic regions from SNP 120415 to 121015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,493 DEBUG Processing 528/851 atomic regions from SNP 158141 to 158741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,501 DEBUG Processing 542/833 atomic regions from SNP 162327 to 162927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,605 DEBUG Processing 325/630 atomic regions from SNP 97378 to 97978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,683 DEBUG Processing 434/996 atomic regions from SNP 130117 to 130717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,703 DEBUG Processing 403/1111 atomic regions from SNP 120715 to 121315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,722 DEBUG Processing 529/851 atomic regions from SNP 158441 to 159041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,742 DEBUG Processing 543/833 atomic regions from SNP 162627 to 163227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,816 DEBUG Processing 326/630 atomic regions from SNP 97678 to 98278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,923 DEBUG Processing 435/996 atomic regions from SNP 130417 to 131017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,954 DEBUG Processing 404/1111 atomic regions from SNP 121015 to 121615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,959 DEBUG Processing 544/833 atomic regions from SNP 162927 to 163527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,965 DEBUG Processing 530/851 atomic regions from SNP 158741 to 159341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,026 DEBUG Processing 327/630 atomic regions from SNP 97978 to 98578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,163 DEBUG Processing 436/996 atomic regions from SNP 130717 to 131317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,176 DEBUG Processing 545/833 atomic regions from SNP 163227 to 163827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,202 DEBUG Processing 531/851 atomic regions from SNP 159041 to 159641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,205 DEBUG Processing 405/1111 atomic regions from SNP 121315 to 121915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,235 DEBUG Processing 328/630 atomic regions from SNP 98278 to 98878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,389 DEBUG Processing 546/833 atomic regions from SNP 163527 to 164127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,402 DEBUG Processing 437/996 atomic regions from SNP 131017 to 131617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,420 DEBUG Processing 532/851 atomic regions from SNP 159341 to 159941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,448 DEBUG Processing 329/630 atomic regions from SNP 98578 to 99178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,462 DEBUG Processing 406/1111 atomic regions from SNP 121615 to 122215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,604 DEBUG Processing 547/833 atomic regions from SNP 163827 to 164427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,638 DEBUG Processing 533/851 atomic regions from SNP 159641 to 160241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,642 DEBUG Processing 438/996 atomic regions from SNP 131317 to 131917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,660 DEBUG Processing 330/630 atomic regions from SNP 98878 to 99478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,725 DEBUG Processing 407/1111 atomic regions from SNP 121915 to 122515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,814 DEBUG Processing 548/833 atomic regions from SNP 164127 to 164727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,874 DEBUG Processing 534/851 atomic regions from SNP 159941 to 160541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,875 DEBUG Processing 331/630 atomic regions from SNP 99178 to 99778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,884 DEBUG Processing 439/996 atomic regions from SNP 131617 to 132217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,004 DEBUG Processing 408/1111 atomic regions from SNP 122215 to 122815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,024 DEBUG Processing 549/833 atomic regions from SNP 164427 to 165027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,091 DEBUG Processing 332/630 atomic regions from SNP 99478 to 100078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,115 DEBUG Processing 535/851 atomic regions from SNP 160241 to 160841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,124 DEBUG Processing 440/996 atomic regions from SNP 131917 to 132517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,233 DEBUG Processing 550/833 atomic regions from SNP 164727 to 165327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,273 DEBUG Processing 409/1111 atomic regions from SNP 122515 to 123115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,304 DEBUG Processing 333/630 atomic regions from SNP 99778 to 100378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,330 DEBUG Processing 536/851 atomic regions from SNP 160541 to 161141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,364 DEBUG Processing 441/996 atomic regions from SNP 132217 to 132817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,453 DEBUG Processing 551/833 atomic regions from SNP 165027 to 165627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,515 DEBUG Processing 334/630 atomic regions from SNP 100078 to 100678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,544 DEBUG Processing 410/1111 atomic regions from SNP 122815 to 123415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,547 DEBUG Processing 537/851 atomic regions from SNP 160841 to 161441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,605 DEBUG Processing 442/996 atomic regions from SNP 132517 to 133117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,683 DEBUG Processing 552/833 atomic regions from SNP 165327 to 165927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,728 DEBUG Processing 335/630 atomic regions from SNP 100378 to 100978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,763 DEBUG Processing 538/851 atomic regions from SNP 161141 to 161741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,803 DEBUG Processing 411/1111 atomic regions from SNP 123115 to 123715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,846 DEBUG Processing 443/996 atomic regions from SNP 132817 to 133417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,892 DEBUG Processing 553/833 atomic regions from SNP 165627 to 166227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,938 DEBUG Processing 336/630 atomic regions from SNP 100678 to 101278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,992 DEBUG Processing 539/851 atomic regions from SNP 161441 to 162041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,074 DEBUG Processing 412/1111 atomic regions from SNP 123415 to 124015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,085 DEBUG Processing 444/996 atomic regions from SNP 133117 to 133717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,103 DEBUG Processing 554/833 atomic regions from SNP 165927 to 166527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,149 DEBUG Processing 337/630 atomic regions from SNP 100978 to 101578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,235 DEBUG Processing 540/851 atomic regions from SNP 161741 to 162341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,318 DEBUG Processing 555/833 atomic regions from SNP 166227 to 166827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,326 DEBUG Processing 445/996 atomic regions from SNP 133417 to 134017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,357 DEBUG Processing 413/1111 atomic regions from SNP 123715 to 124315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,362 DEBUG Processing 338/630 atomic regions from SNP 101278 to 101878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,470 DEBUG Processing 541/851 atomic regions from SNP 162041 to 162641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,537 DEBUG Processing 556/833 atomic regions from SNP 166527 to 167127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,565 DEBUG Processing 446/996 atomic regions from SNP 133717 to 134317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,575 DEBUG Processing 339/630 atomic regions from SNP 101578 to 102178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,649 DEBUG Processing 414/1111 atomic regions from SNP 124015 to 124615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,708 DEBUG Processing 542/851 atomic regions from SNP 162341 to 162941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,751 DEBUG Processing 557/833 atomic regions from SNP 166827 to 167427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,792 DEBUG Processing 340/630 atomic regions from SNP 101878 to 102478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,808 DEBUG Processing 447/996 atomic regions from SNP 134017 to 134617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,922 DEBUG Processing 415/1111 atomic regions from SNP 124315 to 124915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,923 DEBUG Processing 543/851 atomic regions from SNP 162641 to 163241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,933 DEBUG Segmenting atomic regions: 2025-01-31 09:42:58,963 DEBUG Processing 558/833 atomic regions from SNP 167127 to 167727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,006 DEBUG Processing 341/630 atomic regions from SNP 102178 to 102778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,033 DEBUG Processing 1/219 atomic regions from SNP 0 to 601 for chrX (subchromosome 6 of 6). 2025-01-31 09:42:59,049 DEBUG Processing 448/996 atomic regions from SNP 134317 to 134917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,150 DEBUG Processing 544/851 atomic regions from SNP 162941 to 163541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,166 DEBUG Processing 416/1111 atomic regions from SNP 124615 to 125215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,176 DEBUG Processing 559/833 atomic regions from SNP 167427 to 168027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,221 DEBUG Processing 342/630 atomic regions from SNP 102478 to 103078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,250 DEBUG Processing 2/219 atomic regions from SNP 301 to 902 for chrX (subchromosome 6 of 6). 2025-01-31 09:42:59,296 DEBUG Processing 449/996 atomic regions from SNP 134617 to 135217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,382 DEBUG Processing 545/851 atomic regions from SNP 163241 to 163841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,388 DEBUG Processing 560/833 atomic regions from SNP 167727 to 168327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,415 DEBUG Processing 417/1111 atomic regions from SNP 124915 to 125515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,434 DEBUG Processing 343/630 atomic regions from SNP 102778 to 103378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,461 DEBUG Processing 3/219 atomic regions from SNP 602 to 1203 for chrX (subchromosome 6 of 6). 2025-01-31 09:42:59,540 DEBUG Processing 450/996 atomic regions from SNP 134917 to 135517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,603 DEBUG Processing 561/833 atomic regions from SNP 168027 to 168627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,603 DEBUG Processing 546/851 atomic regions from SNP 163541 to 164141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,647 DEBUG Processing 344/630 atomic regions from SNP 103078 to 103678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,667 DEBUG Processing 418/1111 atomic regions from SNP 125215 to 125815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,668 DEBUG Processing 4/219 atomic regions from SNP 903 to 1504 for chrX (subchromosome 6 of 6). 2025-01-31 09:42:59,780 DEBUG Processing 451/996 atomic regions from SNP 135217 to 135817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,818 DEBUG Processing 562/833 atomic regions from SNP 168327 to 168927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,821 DEBUG Processing 547/851 atomic regions from SNP 163841 to 164441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,861 DEBUG Processing 345/630 atomic regions from SNP 103378 to 103978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,876 DEBUG Processing 5/219 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 6 of 6). 2025-01-31 09:42:59,917 DEBUG Processing 419/1111 atomic regions from SNP 125515 to 126115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,020 DEBUG Processing 452/996 atomic regions from SNP 135517 to 136117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,031 DEBUG Processing 563/833 atomic regions from SNP 168627 to 169227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,042 DEBUG Processing 548/851 atomic regions from SNP 164141 to 164741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,073 DEBUG Processing 346/630 atomic regions from SNP 103678 to 104278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,082 DEBUG Processing 6/219 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:00,169 DEBUG Processing 420/1111 atomic regions from SNP 125815 to 126415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,249 DEBUG Processing 564/833 atomic regions from SNP 168927 to 169527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,263 DEBUG Processing 453/996 atomic regions from SNP 135817 to 136417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,273 DEBUG Processing 549/851 atomic regions from SNP 164441 to 165041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,293 DEBUG Processing 347/630 atomic regions from SNP 103978 to 104578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,296 DEBUG Processing 7/219 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:00,415 DEBUG Processing 421/1111 atomic regions from SNP 126115 to 126715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,463 DEBUG Processing 565/833 atomic regions from SNP 169227 to 169827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,503 DEBUG Processing 454/996 atomic regions from SNP 136117 to 136717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,506 DEBUG Processing 8/219 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:00,511 DEBUG Processing 348/630 atomic regions from SNP 104278 to 104878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,518 DEBUG Processing 550/851 atomic regions from SNP 164741 to 165341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,661 DEBUG Processing 422/1111 atomic regions from SNP 126415 to 127015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,699 DEBUG Processing 566/833 atomic regions from SNP 169527 to 170127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,717 DEBUG Processing 9/219 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:00,742 DEBUG Processing 349/630 atomic regions from SNP 104578 to 105178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,747 DEBUG Processing 455/996 atomic regions from SNP 136417 to 137017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,759 DEBUG Processing 551/851 atomic regions from SNP 165041 to 165641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,909 DEBUG Processing 423/1111 atomic regions from SNP 126715 to 127315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,916 DEBUG Processing 567/833 atomic regions from SNP 169827 to 170427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,925 DEBUG Processing 10/219 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:00,970 DEBUG Processing 350/630 atomic regions from SNP 104878 to 105478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,994 DEBUG Processing 456/996 atomic regions from SNP 136717 to 137317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,997 DEBUG Processing 552/851 atomic regions from SNP 165341 to 165941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,132 DEBUG Processing 11/219 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:01,135 DEBUG Processing 568/833 atomic regions from SNP 170127 to 170727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,159 DEBUG Processing 424/1111 atomic regions from SNP 127015 to 127615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,202 DEBUG Processing 351/630 atomic regions from SNP 105178 to 105778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,225 DEBUG Processing 553/851 atomic regions from SNP 165641 to 166241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,242 DEBUG Processing 457/996 atomic regions from SNP 137017 to 137617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,337 DEBUG Processing 12/219 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:01,347 DEBUG Processing 569/833 atomic regions from SNP 170427 to 171027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,408 DEBUG Processing 425/1111 atomic regions from SNP 127315 to 127915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,423 DEBUG Processing 352/630 atomic regions from SNP 105478 to 106078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,442 DEBUG Processing 554/851 atomic regions from SNP 165941 to 166541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,486 DEBUG Processing 458/996 atomic regions from SNP 137317 to 137917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,544 DEBUG Processing 13/219 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:01,576 DEBUG Processing 570/833 atomic regions from SNP 170727 to 171327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,640 DEBUG Processing 353/630 atomic regions from SNP 105778 to 106378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,663 DEBUG Processing 426/1111 atomic regions from SNP 127615 to 128215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,664 DEBUG Processing 555/851 atomic regions from SNP 166241 to 166841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,739 DEBUG Processing 459/996 atomic regions from SNP 137617 to 138217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,755 DEBUG Processing 14/219 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:01,806 DEBUG Processing 571/833 atomic regions from SNP 171027 to 171627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,856 DEBUG Processing 354/630 atomic regions from SNP 106078 to 106678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,890 DEBUG Processing 556/851 atomic regions from SNP 166541 to 167141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,916 DEBUG Processing 427/1111 atomic regions from SNP 127915 to 128515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,965 DEBUG Processing 15/219 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:01,983 DEBUG Processing 460/996 atomic regions from SNP 137917 to 138517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,021 DEBUG Processing 572/833 atomic regions from SNP 171327 to 171927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,095 DEBUG Processing 355/630 atomic regions from SNP 106378 to 106978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,122 DEBUG Processing 557/851 atomic regions from SNP 166841 to 167441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,167 DEBUG Processing 428/1111 atomic regions from SNP 128215 to 128815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,175 DEBUG Processing 16/219 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:02,228 DEBUG Processing 461/996 atomic regions from SNP 138217 to 138817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,232 DEBUG Processing 573/833 atomic regions from SNP 171627 to 172227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,321 DEBUG Processing 356/630 atomic regions from SNP 106678 to 107278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,362 DEBUG Processing 558/851 atomic regions from SNP 167141 to 167741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,382 DEBUG Processing 17/219 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:02,419 DEBUG Processing 429/1111 atomic regions from SNP 128515 to 129115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,444 DEBUG Processing 574/833 atomic regions from SNP 171927 to 172527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,471 DEBUG Processing 462/996 atomic regions from SNP 138517 to 139117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,541 DEBUG Processing 357/630 atomic regions from SNP 106978 to 107578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,581 DEBUG Processing 559/851 atomic regions from SNP 167441 to 168041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,593 DEBUG Processing 18/219 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:02,662 DEBUG Processing 575/833 atomic regions from SNP 172227 to 172827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,670 DEBUG Processing 430/1111 atomic regions from SNP 128815 to 129415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,717 DEBUG Processing 463/996 atomic regions from SNP 138817 to 139417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,759 DEBUG Processing 358/630 atomic regions from SNP 107278 to 107878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,798 DEBUG Processing 560/851 atomic regions from SNP 167741 to 168341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,803 DEBUG Processing 19/219 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:02,879 DEBUG Processing 576/833 atomic regions from SNP 172527 to 173127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,921 DEBUG Processing 431/1111 atomic regions from SNP 129115 to 129715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,961 DEBUG Processing 464/996 atomic regions from SNP 139117 to 139717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,978 DEBUG Processing 359/630 atomic regions from SNP 107578 to 108178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,015 DEBUG Processing 561/851 atomic regions from SNP 168041 to 168641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,015 DEBUG Processing 20/219 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:03,094 DEBUG Processing 577/833 atomic regions from SNP 172827 to 173427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,173 DEBUG Processing 432/1111 atomic regions from SNP 129415 to 130015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,197 DEBUG Processing 360/630 atomic regions from SNP 107878 to 108478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,208 DEBUG Processing 465/996 atomic regions from SNP 139417 to 140017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,225 DEBUG Processing 21/219 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:03,229 DEBUG Processing 562/851 atomic regions from SNP 168341 to 168941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,315 DEBUG Processing 578/833 atomic regions from SNP 173127 to 173727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,416 DEBUG Processing 361/630 atomic regions from SNP 108178 to 108778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,421 DEBUG Processing 433/1111 atomic regions from SNP 129715 to 130315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,438 DEBUG Processing 22/219 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:03,447 DEBUG Processing 563/851 atomic regions from SNP 168641 to 169241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,457 DEBUG Processing 466/996 atomic regions from SNP 139717 to 140317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,539 DEBUG Processing 579/833 atomic regions from SNP 173427 to 174027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,638 DEBUG Processing 362/630 atomic regions from SNP 108478 to 109078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,657 DEBUG Processing 23/219 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:03,668 DEBUG Processing 564/851 atomic regions from SNP 168941 to 169541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,672 DEBUG Processing 434/1111 atomic regions from SNP 130015 to 130615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,711 DEBUG Processing 467/996 atomic regions from SNP 140017 to 140617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,766 DEBUG Processing 580/833 atomic regions from SNP 173727 to 174327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,856 DEBUG Processing 363/630 atomic regions from SNP 108778 to 109378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,872 DEBUG Processing 24/219 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:03,890 DEBUG Processing 565/851 atomic regions from SNP 169241 to 169841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,922 DEBUG Processing 435/1111 atomic regions from SNP 130315 to 130915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,956 DEBUG Processing 468/996 atomic regions from SNP 140317 to 140917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,987 DEBUG Processing 581/833 atomic regions from SNP 174027 to 174627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,074 DEBUG Processing 364/630 atomic regions from SNP 109078 to 109678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,084 DEBUG Processing 25/219 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:04,135 DEBUG Processing 566/851 atomic regions from SNP 169541 to 170141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,179 DEBUG Processing 436/1111 atomic regions from SNP 130615 to 131215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,199 DEBUG Processing 469/996 atomic regions from SNP 140617 to 141217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,228 DEBUG Processing 582/833 atomic regions from SNP 174327 to 174927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,294 DEBUG Processing 26/219 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:04,294 DEBUG Processing 365/630 atomic regions from SNP 109378 to 109978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,358 DEBUG Processing 567/851 atomic regions from SNP 169841 to 170441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,435 DEBUG Processing 437/1111 atomic regions from SNP 130915 to 131515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,441 DEBUG Processing 470/996 atomic regions from SNP 140917 to 141517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,443 DEBUG Processing 583/833 atomic regions from SNP 174627 to 175227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,500 DEBUG Processing 27/219 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:04,508 DEBUG Processing 366/630 atomic regions from SNP 109678 to 110278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,577 DEBUG Processing 568/851 atomic regions from SNP 170141 to 170741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,659 DEBUG Processing 584/833 atomic regions from SNP 174927 to 175527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,688 DEBUG Processing 438/1111 atomic regions from SNP 131215 to 131815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,689 DEBUG Processing 471/996 atomic regions from SNP 141217 to 141817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,707 DEBUG Processing 28/219 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:04,722 DEBUG Processing 367/630 atomic regions from SNP 109978 to 110578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,808 DEBUG Processing 569/851 atomic regions from SNP 170441 to 171041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,874 DEBUG Processing 585/833 atomic regions from SNP 175227 to 175827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,916 DEBUG Processing 29/219 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:04,938 DEBUG Processing 439/1111 atomic regions from SNP 131515 to 132115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,938 DEBUG Processing 368/630 atomic regions from SNP 110278 to 110878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,951 DEBUG Processing 472/996 atomic regions from SNP 141517 to 142117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,052 DEBUG Processing 570/851 atomic regions from SNP 170741 to 171341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,090 DEBUG Processing 586/833 atomic regions from SNP 175527 to 176127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,128 DEBUG Processing 30/219 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:05,157 DEBUG Processing 369/630 atomic regions from SNP 110578 to 111178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,188 DEBUG Processing 440/1111 atomic regions from SNP 131815 to 132415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,232 DEBUG Processing 473/996 atomic regions from SNP 141817 to 142417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,303 DEBUG Processing 587/833 atomic regions from SNP 175827 to 176427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,305 DEBUG Processing 571/851 atomic regions from SNP 171041 to 171641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,338 DEBUG Processing 31/219 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:05,376 DEBUG Processing 370/630 atomic regions from SNP 110878 to 111478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,440 DEBUG Processing 441/1111 atomic regions from SNP 132115 to 132715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,501 DEBUG Processing 474/996 atomic regions from SNP 142117 to 142717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,516 DEBUG Processing 588/833 atomic regions from SNP 176127 to 176727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,546 DEBUG Processing 32/219 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:05,559 DEBUG Processing 572/851 atomic regions from SNP 171341 to 171941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,593 DEBUG Processing 371/630 atomic regions from SNP 111178 to 111778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,691 DEBUG Processing 442/1111 atomic regions from SNP 132415 to 133015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,729 DEBUG Processing 589/833 atomic regions from SNP 176427 to 177027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,743 DEBUG Processing 475/996 atomic regions from SNP 142417 to 143017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,753 DEBUG Processing 33/219 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:05,806 DEBUG Processing 573/851 atomic regions from SNP 171641 to 172241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,807 DEBUG Processing 372/630 atomic regions from SNP 111478 to 112078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,942 DEBUG Processing 443/1111 atomic regions from SNP 132715 to 133315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,942 DEBUG Processing 590/833 atomic regions from SNP 176727 to 177327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,960 DEBUG Processing 34/219 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:05,983 DEBUG Processing 476/996 atomic regions from SNP 142717 to 143317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,022 DEBUG Processing 373/630 atomic regions from SNP 111778 to 112378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,049 DEBUG Processing 574/851 atomic regions from SNP 171941 to 172541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,166 DEBUG Processing 591/833 atomic regions from SNP 177027 to 177627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,168 DEBUG Processing 35/219 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:06,192 DEBUG Processing 444/1111 atomic regions from SNP 133015 to 133615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,226 DEBUG Processing 477/996 atomic regions from SNP 143017 to 143617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,236 DEBUG Processing 374/630 atomic regions from SNP 112078 to 112678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,283 DEBUG Processing 575/851 atomic regions from SNP 172241 to 172841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,379 DEBUG Processing 36/219 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:06,399 DEBUG Processing 592/833 atomic regions from SNP 177327 to 177927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,443 DEBUG Processing 445/1111 atomic regions from SNP 133315 to 133915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,452 DEBUG Processing 375/630 atomic regions from SNP 112378 to 112978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,471 DEBUG Processing 478/996 atomic regions from SNP 143317 to 143917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,514 DEBUG Processing 576/851 atomic regions from SNP 172541 to 173141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,588 DEBUG Processing 37/219 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:06,618 DEBUG Processing 593/833 atomic regions from SNP 177627 to 178227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,670 DEBUG Processing 376/630 atomic regions from SNP 112678 to 113278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,699 DEBUG Processing 446/1111 atomic regions from SNP 133615 to 134215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,713 DEBUG Processing 479/996 atomic regions from SNP 143617 to 144217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,739 DEBUG Processing 577/851 atomic regions from SNP 172841 to 173441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,793 DEBUG Processing 38/219 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:06,836 DEBUG Processing 594/833 atomic regions from SNP 177927 to 178527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,888 DEBUG Processing 377/630 atomic regions from SNP 112978 to 113578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,957 DEBUG Processing 578/851 atomic regions from SNP 173141 to 173741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,958 DEBUG Processing 480/996 atomic regions from SNP 143917 to 144517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,959 DEBUG Processing 447/1111 atomic regions from SNP 133915 to 134515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,996 DEBUG Processing 39/219 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:07,046 DEBUG Processing 595/833 atomic regions from SNP 178227 to 178827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,104 DEBUG Processing 378/630 atomic regions from SNP 113278 to 113878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,180 DEBUG Processing 579/851 atomic regions from SNP 173441 to 174041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,202 DEBUG Processing 481/996 atomic regions from SNP 144217 to 144817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,203 DEBUG Processing 40/219 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:07,214 DEBUG Processing 448/1111 atomic regions from SNP 134215 to 134815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,259 DEBUG Processing 596/833 atomic regions from SNP 178527 to 179127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,320 DEBUG Processing 379/630 atomic regions from SNP 113578 to 114178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,399 DEBUG Processing 580/851 atomic regions from SNP 173741 to 174341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,415 DEBUG Processing 41/219 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:07,448 DEBUG Processing 482/996 atomic regions from SNP 144517 to 145117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,466 DEBUG Processing 449/1111 atomic regions from SNP 134515 to 135115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,474 DEBUG Processing 597/833 atomic regions from SNP 178827 to 179427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,533 DEBUG Processing 380/630 atomic regions from SNP 113878 to 114478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,616 DEBUG Processing 581/851 atomic regions from SNP 174041 to 174641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,625 DEBUG Processing 42/219 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:07,689 DEBUG Processing 483/996 atomic regions from SNP 144817 to 145417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,691 DEBUG Processing 598/833 atomic regions from SNP 179127 to 179727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,722 DEBUG Processing 450/1111 atomic regions from SNP 134815 to 135415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,750 DEBUG Processing 381/630 atomic regions from SNP 114178 to 114778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,831 DEBUG Processing 582/851 atomic regions from SNP 174341 to 174941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,833 DEBUG Processing 43/219 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:07,907 DEBUG Processing 599/833 atomic regions from SNP 179427 to 180027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,931 DEBUG Processing 484/996 atomic regions from SNP 145117 to 145717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,966 DEBUG Processing 382/630 atomic regions from SNP 114478 to 115078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,975 DEBUG Processing 451/1111 atomic regions from SNP 135115 to 135715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,040 DEBUG Processing 44/219 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:08,046 DEBUG Processing 583/851 atomic regions from SNP 174641 to 175241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,131 DEBUG Processing 600/833 atomic regions from SNP 179727 to 180327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,172 DEBUG Processing 485/996 atomic regions from SNP 145417 to 146017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,184 DEBUG Processing 383/630 atomic regions from SNP 114778 to 115378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,233 DEBUG Processing 452/1111 atomic regions from SNP 135415 to 136015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,250 DEBUG Processing 45/219 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:08,265 DEBUG Processing 584/851 atomic regions from SNP 174941 to 175541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,374 DEBUG Processing 601/833 atomic regions from SNP 180027 to 180627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,401 DEBUG Processing 384/630 atomic regions from SNP 115078 to 115678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,413 DEBUG Processing 486/996 atomic regions from SNP 145717 to 146317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,462 DEBUG Processing 46/219 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:08,482 DEBUG Processing 585/851 atomic regions from SNP 175241 to 175841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,489 DEBUG Processing 453/1111 atomic regions from SNP 135715 to 136315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,617 DEBUG Processing 385/630 atomic regions from SNP 115378 to 115978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,622 DEBUG Processing 602/833 atomic regions from SNP 180327 to 180927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,655 DEBUG Processing 487/996 atomic regions from SNP 146017 to 146617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,674 DEBUG Processing 47/219 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:08,710 DEBUG Processing 586/851 atomic regions from SNP 175541 to 176141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,749 DEBUG Processing 454/1111 atomic regions from SNP 136015 to 136615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,832 DEBUG Processing 386/630 atomic regions from SNP 115678 to 116278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,866 DEBUG Processing 603/833 atomic regions from SNP 180627 to 181227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,885 DEBUG Processing 48/219 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:08,897 DEBUG Processing 488/996 atomic regions from SNP 146317 to 146917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,930 DEBUG Processing 587/851 atomic regions from SNP 175841 to 176441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,000 DEBUG Processing 455/1111 atomic regions from SNP 136315 to 136915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,049 DEBUG Processing 387/630 atomic regions from SNP 115978 to 116578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,094 DEBUG Processing 49/219 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:09,108 DEBUG Processing 604/833 atomic regions from SNP 180927 to 181527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,138 DEBUG Processing 489/996 atomic regions from SNP 146617 to 147217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,148 DEBUG Processing 588/851 atomic regions from SNP 176141 to 176741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,255 DEBUG Processing 456/1111 atomic regions from SNP 136615 to 137215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,265 DEBUG Processing 388/630 atomic regions from SNP 116278 to 116878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,305 DEBUG Processing 50/219 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:09,351 DEBUG Processing 605/833 atomic regions from SNP 181227 to 181827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,366 DEBUG Processing 589/851 atomic regions from SNP 176441 to 177041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,380 DEBUG Processing 490/996 atomic regions from SNP 146917 to 147517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,487 DEBUG Processing 389/630 atomic regions from SNP 116578 to 117178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,509 DEBUG Processing 457/1111 atomic regions from SNP 136915 to 137515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,520 DEBUG Processing 51/219 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:09,587 DEBUG Processing 590/851 atomic regions from SNP 176741 to 177341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,595 DEBUG Processing 606/833 atomic regions from SNP 181527 to 182127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,623 DEBUG Processing 491/996 atomic regions from SNP 147217 to 147817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,704 DEBUG Processing 390/630 atomic regions from SNP 116878 to 117478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,737 DEBUG Processing 52/219 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:09,789 DEBUG Processing 458/1111 atomic regions from SNP 137215 to 137815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,811 DEBUG Processing 591/851 atomic regions from SNP 177041 to 177641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,838 DEBUG Processing 607/833 atomic regions from SNP 181827 to 182427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,865 DEBUG Processing 492/996 atomic regions from SNP 147517 to 148117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,918 DEBUG Processing 391/630 atomic regions from SNP 117178 to 117778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,944 DEBUG Processing 53/219 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:10,033 DEBUG Processing 592/851 atomic regions from SNP 177341 to 177941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,049 DEBUG Processing 459/1111 atomic regions from SNP 137515 to 138115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,076 DEBUG Processing 608/833 atomic regions from SNP 182127 to 182727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,105 DEBUG Processing 493/996 atomic regions from SNP 147817 to 148417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,149 DEBUG Processing 54/219 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:10,158 DEBUG Processing 392/630 atomic regions from SNP 117478 to 118078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,256 DEBUG Processing 593/851 atomic regions from SNP 177641 to 178241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,305 DEBUG Processing 460/1111 atomic regions from SNP 137815 to 138415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,326 DEBUG Processing 609/833 atomic regions from SNP 182427 to 183027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,349 DEBUG Processing 494/996 atomic regions from SNP 148117 to 148717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,357 DEBUG Processing 55/219 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:10,402 DEBUG Processing 393/630 atomic regions from SNP 117778 to 118378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,488 DEBUG Processing 594/851 atomic regions from SNP 177941 to 178541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,579 DEBUG Processing 56/219 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:10,580 DEBUG Processing 461/1111 atomic regions from SNP 138115 to 138715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,592 DEBUG Processing 610/833 atomic regions from SNP 182727 to 183327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,604 DEBUG Processing 495/996 atomic regions from SNP 148417 to 149017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,616 DEBUG Processing 394/630 atomic regions from SNP 118078 to 118678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,709 DEBUG Processing 595/851 atomic regions from SNP 178241 to 178841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,795 DEBUG Processing 57/219 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:10,834 DEBUG Processing 395/630 atomic regions from SNP 118378 to 118978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,838 DEBUG Processing 611/833 atomic regions from SNP 183027 to 183627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,838 DEBUG Processing 462/1111 atomic regions from SNP 138415 to 139015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,852 DEBUG Processing 496/996 atomic regions from SNP 148717 to 149317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,927 DEBUG Processing 596/851 atomic regions from SNP 178541 to 179141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,004 DEBUG Processing 58/219 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:11,075 DEBUG Processing 396/630 atomic regions from SNP 118678 to 119278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,091 DEBUG Processing 612/833 atomic regions from SNP 183327 to 183927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,096 DEBUG Processing 463/1111 atomic regions from SNP 138715 to 139315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,098 DEBUG Processing 497/996 atomic regions from SNP 149017 to 149617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,148 DEBUG Processing 597/851 atomic regions from SNP 178841 to 179441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,217 DEBUG Processing 59/219 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:11,311 DEBUG Processing 397/630 atomic regions from SNP 118978 to 119578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,339 DEBUG Processing 613/833 atomic regions from SNP 183627 to 184227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,341 DEBUG Processing 498/996 atomic regions from SNP 149317 to 149917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,353 DEBUG Processing 464/1111 atomic regions from SNP 139015 to 139615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,371 DEBUG Processing 598/851 atomic regions from SNP 179141 to 179741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,425 DEBUG Processing 60/219 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:11,545 DEBUG Processing 398/630 atomic regions from SNP 119278 to 119878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,563 DEBUG Processing 614/833 atomic regions from SNP 183927 to 184527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,583 DEBUG Processing 499/996 atomic regions from SNP 149617 to 150217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,597 DEBUG Processing 599/851 atomic regions from SNP 179441 to 180041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,611 DEBUG Processing 465/1111 atomic regions from SNP 139315 to 139915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,635 DEBUG Processing 61/219 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:11,767 DEBUG Processing 399/630 atomic regions from SNP 119578 to 120178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,791 DEBUG Processing 615/833 atomic regions from SNP 184227 to 184827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,827 DEBUG Processing 600/851 atomic regions from SNP 179741 to 180341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,834 DEBUG Processing 500/996 atomic regions from SNP 149917 to 150517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,854 DEBUG Processing 62/219 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:11,872 DEBUG Processing 466/1111 atomic regions from SNP 139615 to 140215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,996 DEBUG Processing 400/630 atomic regions from SNP 119878 to 120478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,011 DEBUG Processing 616/833 atomic regions from SNP 184527 to 185127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,050 DEBUG Processing 601/851 atomic regions from SNP 180041 to 180641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,069 DEBUG Processing 63/219 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:12,081 DEBUG Processing 501/996 atomic regions from SNP 150217 to 150817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,132 DEBUG Processing 467/1111 atomic regions from SNP 139915 to 140515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,234 DEBUG Processing 617/833 atomic regions from SNP 184827 to 185427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,251 DEBUG Processing 401/630 atomic regions from SNP 120178 to 120778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,277 DEBUG Processing 602/851 atomic regions from SNP 180341 to 180941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,291 DEBUG Processing 64/219 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:12,343 DEBUG Processing 502/996 atomic regions from SNP 150517 to 151117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,392 DEBUG Processing 468/1111 atomic regions from SNP 140215 to 140815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,459 DEBUG Processing 618/833 atomic regions from SNP 185127 to 185727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,504 DEBUG Processing 603/851 atomic regions from SNP 180641 to 181241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,514 DEBUG Processing 65/219 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:12,521 DEBUG Processing 402/630 atomic regions from SNP 120478 to 121078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,620 DEBUG Processing 503/996 atomic regions from SNP 150817 to 151417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,658 DEBUG Processing 469/1111 atomic regions from SNP 140515 to 141115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,687 DEBUG Processing 619/833 atomic regions from SNP 185427 to 186027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,737 DEBUG Processing 604/851 atomic regions from SNP 180941 to 181541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,742 DEBUG Processing 66/219 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:12,775 DEBUG Processing 403/630 atomic regions from SNP 120778 to 121378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,904 DEBUG Processing 504/996 atomic regions from SNP 151117 to 151717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,923 DEBUG Processing 620/833 atomic regions from SNP 185727 to 186327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,939 DEBUG Processing 470/1111 atomic regions from SNP 140815 to 141415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,981 DEBUG Processing 67/219 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:12,983 DEBUG Processing 605/851 atomic regions from SNP 181241 to 181841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,051 DEBUG Processing 404/630 atomic regions from SNP 121078 to 121678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,157 DEBUG Processing 621/833 atomic regions from SNP 186027 to 186627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,179 DEBUG Processing 505/996 atomic regions from SNP 151417 to 152017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,210 DEBUG Processing 68/219 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:13,221 DEBUG Processing 606/851 atomic regions from SNP 181541 to 182141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,223 DEBUG Processing 471/1111 atomic regions from SNP 141115 to 141715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,317 DEBUG Processing 405/630 atomic regions from SNP 121378 to 121978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,395 DEBUG Processing 622/833 atomic regions from SNP 186327 to 186927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,440 DEBUG Processing 69/219 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:13,445 DEBUG Processing 506/996 atomic regions from SNP 151717 to 152317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,462 DEBUG Processing 607/851 atomic regions from SNP 181841 to 182441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,498 DEBUG Processing 472/1111 atomic regions from SNP 141415 to 142015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,546 DEBUG Processing 406/630 atomic regions from SNP 121678 to 122278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,631 DEBUG Processing 623/833 atomic regions from SNP 186627 to 187227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,651 DEBUG Processing 70/219 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:13,689 DEBUG Processing 608/851 atomic regions from SNP 182141 to 182741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,694 DEBUG Processing 507/996 atomic regions from SNP 152017 to 152617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,763 DEBUG Processing 473/1111 atomic regions from SNP 141715 to 142315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,768 DEBUG Processing 407/630 atomic regions from SNP 121978 to 122578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,861 DEBUG Processing 71/219 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:13,862 DEBUG Processing 624/833 atomic regions from SNP 186927 to 187527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,916 DEBUG Processing 609/851 atomic regions from SNP 182441 to 183041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,941 DEBUG Processing 508/996 atomic regions from SNP 152317 to 152917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,002 DEBUG Processing 408/630 atomic regions from SNP 122278 to 122878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,023 DEBUG Processing 474/1111 atomic regions from SNP 142015 to 142615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,071 DEBUG Processing 72/219 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:14,081 DEBUG Processing 625/833 atomic regions from SNP 187227 to 187827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,137 DEBUG Processing 610/851 atomic regions from SNP 182741 to 183341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,203 DEBUG Processing 509/996 atomic regions from SNP 152617 to 153217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,251 DEBUG Processing 409/630 atomic regions from SNP 122578 to 123178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,282 DEBUG Processing 73/219 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:14,299 DEBUG Processing 626/833 atomic regions from SNP 187527 to 188127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,302 DEBUG Processing 475/1111 atomic regions from SNP 142315 to 142915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,357 DEBUG Processing 611/851 atomic regions from SNP 183041 to 183641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,473 DEBUG Processing 510/996 atomic regions from SNP 152917 to 153517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,483 DEBUG Processing 410/630 atomic regions from SNP 122878 to 123478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,499 DEBUG Processing 74/219 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:14,518 DEBUG Processing 627/833 atomic regions from SNP 187827 to 188427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,582 DEBUG Processing 612/851 atomic regions from SNP 183341 to 183941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,585 DEBUG Processing 476/1111 atomic regions from SNP 142615 to 143215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,710 DEBUG Processing 75/219 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:14,718 DEBUG Processing 511/996 atomic regions from SNP 153217 to 153817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,724 DEBUG Processing 411/630 atomic regions from SNP 123178 to 123778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,736 DEBUG Processing 628/833 atomic regions from SNP 188127 to 188727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,807 DEBUG Processing 613/851 atomic regions from SNP 183641 to 184241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,874 DEBUG Processing 477/1111 atomic regions from SNP 142915 to 143515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,919 DEBUG Processing 76/219 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:14,957 DEBUG Processing 629/833 atomic regions from SNP 188427 to 189027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,958 DEBUG Processing 412/630 atomic regions from SNP 123478 to 124078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,987 DEBUG Processing 512/996 atomic regions from SNP 153517 to 154117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,032 DEBUG Processing 614/851 atomic regions from SNP 183941 to 184541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,132 DEBUG Processing 77/219 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:15,154 DEBUG Processing 478/1111 atomic regions from SNP 143215 to 143815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,183 DEBUG Processing 630/833 atomic regions from SNP 188727 to 189327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,191 DEBUG Processing 413/630 atomic regions from SNP 123778 to 124378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,259 DEBUG Processing 513/996 atomic regions from SNP 153817 to 154417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,267 DEBUG Processing 615/851 atomic regions from SNP 184241 to 184841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,345 DEBUG Processing 78/219 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:15,406 DEBUG Processing 414/630 atomic regions from SNP 124078 to 124678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,409 DEBUG Processing 631/833 atomic regions from SNP 189027 to 189627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,412 DEBUG Processing 479/1111 atomic regions from SNP 143515 to 144115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,505 DEBUG Processing 514/996 atomic regions from SNP 154117 to 154717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,518 DEBUG Processing 616/851 atomic regions from SNP 184541 to 185141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,553 DEBUG Processing 79/219 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:15,620 DEBUG Processing 415/630 atomic regions from SNP 124378 to 124978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,629 DEBUG Processing 632/833 atomic regions from SNP 189327 to 189927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,665 DEBUG Processing 480/1111 atomic regions from SNP 143815 to 144415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,756 DEBUG Processing 515/996 atomic regions from SNP 154417 to 155017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,762 DEBUG Processing 617/851 atomic regions from SNP 184841 to 185441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,771 DEBUG Processing 80/219 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:15,851 DEBUG Processing 633/833 atomic regions from SNP 189627 to 190227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,852 DEBUG Processing 416/630 atomic regions from SNP 124678 to 125278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,939 DEBUG Processing 481/1111 atomic regions from SNP 144115 to 144715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,995 DEBUG Processing 81/219 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:16,012 DEBUG Processing 516/996 atomic regions from SNP 154717 to 155317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,013 DEBUG Processing 618/851 atomic regions from SNP 185141 to 185741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,078 DEBUG Processing 634/833 atomic regions from SNP 189927 to 190527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,112 DEBUG Processing 417/630 atomic regions from SNP 124978 to 125578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,220 DEBUG Processing 82/219 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:16,222 DEBUG Processing 482/1111 atomic regions from SNP 144415 to 145015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,263 DEBUG Processing 619/851 atomic regions from SNP 185441 to 186041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,281 DEBUG Processing 517/996 atomic regions from SNP 155017 to 155617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,343 DEBUG Processing 635/833 atomic regions from SNP 190227 to 190827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,397 DEBUG Processing 418/630 atomic regions from SNP 125278 to 125878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,555 DEBUG Processing 83/219 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:16,600 DEBUG Processing 483/1111 atomic regions from SNP 144715 to 145315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,610 DEBUG Processing 620/851 atomic regions from SNP 185741 to 186341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,635 DEBUG Processing 518/996 atomic regions from SNP 155317 to 155917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,677 DEBUG Processing 636/833 atomic regions from SNP 190527 to 191127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,690 DEBUG Processing 419/630 atomic regions from SNP 125578 to 126178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,785 DEBUG Processing 84/219 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:16,862 DEBUG Processing 621/851 atomic regions from SNP 186041 to 186641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,919 DEBUG Processing 484/1111 atomic regions from SNP 145015 to 145615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,975 DEBUG Processing 519/996 atomic regions from SNP 155617 to 156217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,012 DEBUG Processing 637/833 atomic regions from SNP 190827 to 191427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,024 DEBUG Processing 420/630 atomic regions from SNP 125878 to 126478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,112 DEBUG Processing 85/219 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:17,214 DEBUG Processing 622/851 atomic regions from SNP 186341 to 186941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,357 DEBUG Processing 485/1111 atomic regions from SNP 145315 to 145915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,366 DEBUG Processing 520/996 atomic regions from SNP 155917 to 156517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,373 DEBUG Processing 638/833 atomic regions from SNP 191127 to 191727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,377 DEBUG Processing 421/630 atomic regions from SNP 126178 to 126778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,476 DEBUG Processing 86/219 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:17,596 DEBUG Processing 623/851 atomic regions from SNP 186641 to 187241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,730 DEBUG Processing 422/630 atomic regions from SNP 126478 to 127078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,746 DEBUG Processing 521/996 atomic regions from SNP 156217 to 156817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,756 DEBUG Processing 639/833 atomic regions from SNP 191427 to 192027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,793 DEBUG Processing 486/1111 atomic regions from SNP 145615 to 146215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,814 DEBUG Processing 87/219 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:17,957 DEBUG Processing 624/851 atomic regions from SNP 186941 to 187541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,999 DEBUG Processing 423/630 atomic regions from SNP 126778 to 127378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,024 DEBUG Processing 640/833 atomic regions from SNP 191727 to 192327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,032 DEBUG Processing 522/996 atomic regions from SNP 156517 to 157117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,074 DEBUG Processing 88/219 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:18,114 DEBUG Processing 487/1111 atomic regions from SNP 145915 to 146515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,225 DEBUG Processing 625/851 atomic regions from SNP 187241 to 187841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,290 DEBUG Processing 424/630 atomic regions from SNP 127078 to 127678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,325 DEBUG Processing 641/833 atomic regions from SNP 192027 to 192627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,326 DEBUG Processing 89/219 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:18,333 DEBUG Processing 523/996 atomic regions from SNP 156817 to 157417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,425 DEBUG Processing 488/1111 atomic regions from SNP 146215 to 146815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,453 DEBUG Processing 626/851 atomic regions from SNP 187541 to 188141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,560 DEBUG Processing 425/630 atomic regions from SNP 127378 to 127978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,600 DEBUG Processing 90/219 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:18,642 DEBUG Processing 642/833 atomic regions from SNP 192327 to 192927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,646 DEBUG Processing 524/996 atomic regions from SNP 157117 to 157717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,762 DEBUG Processing 627/851 atomic regions from SNP 187841 to 188441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,795 DEBUG Processing 489/1111 atomic regions from SNP 146515 to 147115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,858 DEBUG Processing 426/630 atomic regions from SNP 127678 to 128278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,884 DEBUG Processing 91/219 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:18,952 DEBUG Processing 643/833 atomic regions from SNP 192627 to 193227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,969 DEBUG Processing 525/996 atomic regions from SNP 157417 to 158017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,076 DEBUG Processing 628/851 atomic regions from SNP 188141 to 188741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,143 DEBUG Processing 490/1111 atomic regions from SNP 146815 to 147415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,182 DEBUG Processing 92/219 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:19,190 DEBUG Processing 427/630 atomic regions from SNP 127978 to 128578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,300 DEBUG Processing 526/996 atomic regions from SNP 157717 to 158317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,310 DEBUG Processing 644/833 atomic regions from SNP 192927 to 193527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,375 DEBUG Processing 629/851 atomic regions from SNP 188441 to 189041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,447 DEBUG Processing 93/219 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:19,450 DEBUG Processing 491/1111 atomic regions from SNP 147115 to 147715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,468 DEBUG Processing 428/630 atomic regions from SNP 128278 to 128878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,618 DEBUG Processing 527/996 atomic regions from SNP 158017 to 158617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,659 DEBUG Processing 645/833 atomic regions from SNP 193227 to 193827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,674 DEBUG Processing 630/851 atomic regions from SNP 188741 to 189341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,684 DEBUG Processing 94/219 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:19,710 DEBUG Processing 429/630 atomic regions from SNP 128578 to 129178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,734 DEBUG Processing 492/1111 atomic regions from SNP 147415 to 148015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,871 DEBUG Processing 528/996 atomic regions from SNP 158317 to 158917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,923 DEBUG Processing 646/833 atomic regions from SNP 193527 to 194127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,953 DEBUG Processing 631/851 atomic regions from SNP 189041 to 189641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,955 DEBUG Processing 95/219 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:19,994 DEBUG Processing 430/630 atomic regions from SNP 128878 to 129478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,046 DEBUG Processing 493/1111 atomic regions from SNP 147715 to 148315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,151 DEBUG Processing 529/996 atomic regions from SNP 158617 to 159217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,201 DEBUG Processing 647/833 atomic regions from SNP 193827 to 194427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,240 DEBUG Processing 96/219 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:20,260 DEBUG Processing 632/851 atomic regions from SNP 189341 to 189941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,296 DEBUG Processing 431/630 atomic regions from SNP 129178 to 129778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,368 DEBUG Processing 494/1111 atomic regions from SNP 148015 to 148615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,446 DEBUG Processing 530/996 atomic regions from SNP 158917 to 159517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,524 DEBUG Processing 648/833 atomic regions from SNP 194127 to 194727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,535 DEBUG Processing 97/219 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:20,579 DEBUG Processing 633/851 atomic regions from SNP 189641 to 190241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,602 DEBUG Processing 432/630 atomic regions from SNP 129478 to 130078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,673 DEBUG Processing 495/1111 atomic regions from SNP 148315 to 148915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,703 DEBUG Processing 531/996 atomic regions from SNP 159217 to 159817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,759 DEBUG Processing 98/219 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:20,781 DEBUG Processing 649/833 atomic regions from SNP 194427 to 195027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,814 DEBUG Processing 634/851 atomic regions from SNP 189941 to 190541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,830 DEBUG Processing 433/630 atomic regions from SNP 129778 to 130378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,937 DEBUG Processing 496/1111 atomic regions from SNP 148615 to 149215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,952 DEBUG Processing 532/996 atomic regions from SNP 159517 to 160117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,975 DEBUG Processing 99/219 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:21,022 DEBUG Processing 650/833 atomic regions from SNP 194727 to 195327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,055 DEBUG Processing 635/851 atomic regions from SNP 190241 to 190841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,061 DEBUG Processing 434/630 atomic regions from SNP 130078 to 130678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,200 DEBUG Processing 100/219 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:21,206 DEBUG Processing 497/1111 atomic regions from SNP 148915 to 149515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,214 DEBUG Processing 533/996 atomic regions from SNP 159817 to 160417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,269 DEBUG Processing 651/833 atomic regions from SNP 195027 to 195627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,286 DEBUG Processing 435/630 atomic regions from SNP 130378 to 130978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,292 DEBUG Processing 636/851 atomic regions from SNP 190541 to 191141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,452 DEBUG Processing 101/219 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:21,509 DEBUG Processing 498/1111 atomic regions from SNP 149215 to 149815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,516 DEBUG Processing 534/996 atomic regions from SNP 160117 to 160717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,561 DEBUG Processing 436/630 atomic regions from SNP 130678 to 131278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,572 DEBUG Processing 652/833 atomic regions from SNP 195327 to 195927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,581 DEBUG Processing 637/851 atomic regions from SNP 190841 to 191441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,702 DEBUG Processing 102/219 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:21,832 DEBUG Processing 499/1111 atomic regions from SNP 149515 to 150115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,838 DEBUG Processing 535/996 atomic regions from SNP 160417 to 161017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,849 DEBUG Processing 437/630 atomic regions from SNP 130978 to 131578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,908 DEBUG Processing 653/833 atomic regions from SNP 195627 to 196227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,912 DEBUG Processing 638/851 atomic regions from SNP 191141 to 191741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,959 DEBUG Processing 103/219 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:22,143 DEBUG Processing 438/630 atomic regions from SNP 131278 to 131878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,158 DEBUG Processing 536/996 atomic regions from SNP 160717 to 161317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,181 DEBUG Processing 500/1111 atomic regions from SNP 149815 to 150415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,256 DEBUG Processing 639/851 atomic regions from SNP 191441 to 192041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,260 DEBUG Processing 104/219 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:22,267 DEBUG Processing 654/833 atomic regions from SNP 195927 to 196527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,452 DEBUG Processing 439/630 atomic regions from SNP 131578 to 132178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,485 DEBUG Processing 537/996 atomic regions from SNP 161017 to 161617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,563 DEBUG Processing 501/1111 atomic regions from SNP 150115 to 150715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,573 DEBUG Processing 105/219 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:22,596 DEBUG Processing 640/851 atomic regions from SNP 191741 to 192341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,629 DEBUG Processing 655/833 atomic regions from SNP 196227 to 196827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,761 DEBUG Processing 440/630 atomic regions from SNP 131878 to 132478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,822 DEBUG Processing 538/996 atomic regions from SNP 161317 to 161917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,888 DEBUG Processing 106/219 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:22,938 DEBUG Processing 502/1111 atomic regions from SNP 150415 to 151015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,943 DEBUG Processing 641/851 atomic regions from SNP 192041 to 192641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,987 DEBUG Processing 656/833 atomic regions from SNP 196527 to 197127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,114 DEBUG Processing 441/630 atomic regions from SNP 132178 to 132778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,166 DEBUG Processing 539/996 atomic regions from SNP 161617 to 162217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,200 DEBUG Processing 107/219 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:23,289 DEBUG Processing 642/851 atomic regions from SNP 192341 to 192941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,314 DEBUG Processing 503/1111 atomic regions from SNP 150715 to 151315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,347 DEBUG Processing 657/833 atomic regions from SNP 196827 to 197427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,427 DEBUG Processing 442/630 atomic regions from SNP 132478 to 133078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,505 DEBUG Processing 108/219 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:23,508 DEBUG Processing 540/996 atomic regions from SNP 161917 to 162517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,626 DEBUG Processing 643/851 atomic regions from SNP 192641 to 193241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,700 DEBUG Processing 504/1111 atomic regions from SNP 151015 to 151615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,709 DEBUG Processing 658/833 atomic regions from SNP 197127 to 197727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,740 DEBUG Processing 443/630 atomic regions from SNP 132778 to 133378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,827 DEBUG Processing 109/219 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:23,863 DEBUG Processing 541/996 atomic regions from SNP 162217 to 162817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,004 DEBUG Processing 644/851 atomic regions from SNP 192941 to 193541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,055 DEBUG Processing 444/630 atomic regions from SNP 133078 to 133678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,072 DEBUG Processing 659/833 atomic regions from SNP 197427 to 198027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,088 DEBUG Processing 505/1111 atomic regions from SNP 151315 to 151915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,117 DEBUG Processing 110/219 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:24,203 DEBUG Processing 542/996 atomic regions from SNP 162517 to 163117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,381 DEBUG Processing 645/851 atomic regions from SNP 193241 to 193841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,387 DEBUG Processing 445/630 atomic regions from SNP 133378 to 133978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,424 DEBUG Processing 111/219 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:24,441 DEBUG Processing 660/833 atomic regions from SNP 197727 to 198327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,469 DEBUG Processing 506/1111 atomic regions from SNP 151615 to 152215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,524 DEBUG Processing 543/996 atomic regions from SNP 162817 to 163417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,736 DEBUG Processing 446/630 atomic regions from SNP 133678 to 134278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,736 DEBUG Processing 646/851 atomic regions from SNP 193541 to 194141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,761 DEBUG Processing 112/219 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:24,819 DEBUG Processing 661/833 atomic regions from SNP 198027 to 198627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,878 DEBUG Processing 507/1111 atomic regions from SNP 151915 to 152515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,879 DEBUG Processing 544/996 atomic regions from SNP 163117 to 163717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,102 DEBUG Processing 447/630 atomic regions from SNP 133978 to 134578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,104 DEBUG Processing 647/851 atomic regions from SNP 193841 to 194441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,112 DEBUG Processing 113/219 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:25,210 DEBUG Processing 662/833 atomic regions from SNP 198327 to 198927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,261 DEBUG Processing 545/996 atomic regions from SNP 163417 to 164017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,308 DEBUG Processing 508/1111 atomic regions from SNP 152215 to 152815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,380 DEBUG Processing 448/630 atomic regions from SNP 134278 to 134878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,380 DEBUG Processing 648/851 atomic regions from SNP 194141 to 194741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,390 DEBUG Processing 114/219 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:25,541 DEBUG Processing 663/833 atomic regions from SNP 198627 to 199227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,597 DEBUG Processing 546/996 atomic regions from SNP 163717 to 164317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,688 DEBUG Processing 115/219 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:25,697 DEBUG Processing 449/630 atomic regions from SNP 134578 to 135178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,699 DEBUG Processing 649/851 atomic regions from SNP 194441 to 195041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,699 DEBUG Processing 509/1111 atomic regions from SNP 152515 to 153115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,877 DEBUG Processing 664/833 atomic regions from SNP 198927 to 199527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,943 DEBUG Processing 547/996 atomic regions from SNP 164017 to 164617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,009 DEBUG Processing 116/219 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:26,020 DEBUG Processing 450/630 atomic regions from SNP 134878 to 135478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,062 DEBUG Processing 650/851 atomic regions from SNP 194741 to 195341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,088 DEBUG Processing 510/1111 atomic regions from SNP 152815 to 153415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,231 DEBUG Processing 665/833 atomic regions from SNP 199227 to 199827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,281 DEBUG Processing 548/996 atomic regions from SNP 164317 to 164917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,318 DEBUG Processing 117/219 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:26,340 DEBUG Processing 451/630 atomic regions from SNP 135178 to 135778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,441 DEBUG Processing 651/851 atomic regions from SNP 195041 to 195641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,473 DEBUG Processing 511/1111 atomic regions from SNP 153115 to 153715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,593 DEBUG Processing 666/833 atomic regions from SNP 199527 to 200127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,622 DEBUG Processing 549/996 atomic regions from SNP 164617 to 165217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,627 DEBUG Processing 118/219 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:26,649 DEBUG Processing 452/630 atomic regions from SNP 135478 to 136078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,782 DEBUG Processing 652/851 atomic regions from SNP 195341 to 195941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,850 DEBUG Processing 512/1111 atomic regions from SNP 153415 to 154015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,950 DEBUG Processing 119/219 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:26,965 DEBUG Processing 667/833 atomic regions from SNP 199827 to 200427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,969 DEBUG Processing 550/996 atomic regions from SNP 164917 to 165517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,978 DEBUG Processing 453/630 atomic regions from SNP 135778 to 136378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,137 DEBUG Processing 653/851 atomic regions from SNP 195641 to 196241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,243 DEBUG Processing 513/1111 atomic regions from SNP 153715 to 154315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,278 DEBUG Processing 120/219 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:27,316 DEBUG Processing 454/630 atomic regions from SNP 136078 to 136678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,339 DEBUG Processing 551/996 atomic regions from SNP 165217 to 165817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,344 DEBUG Processing 668/833 atomic regions from SNP 200127 to 200727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,496 DEBUG Processing 654/851 atomic regions from SNP 195941 to 196541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,614 DEBUG Processing 121/219 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:27,642 DEBUG Processing 514/1111 atomic regions from SNP 154015 to 154615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,662 DEBUG Processing 455/630 atomic regions from SNP 136378 to 136978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,704 DEBUG Processing 552/996 atomic regions from SNP 165517 to 166117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,733 DEBUG Processing 669/833 atomic regions from SNP 200427 to 201027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,850 DEBUG Processing 655/851 atomic regions from SNP 196241 to 196841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,943 DEBUG Processing 122/219 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:28,033 DEBUG Processing 456/630 atomic regions from SNP 136678 to 137278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,043 DEBUG Processing 515/1111 atomic regions from SNP 154315 to 154915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,069 DEBUG Processing 553/996 atomic regions from SNP 165817 to 166417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,117 DEBUG Processing 670/833 atomic regions from SNP 200727 to 201327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,230 DEBUG Processing 656/851 atomic regions from SNP 196541 to 197141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,309 DEBUG Processing 123/219 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:28,392 DEBUG Processing 457/630 atomic regions from SNP 136978 to 137578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,446 DEBUG Processing 516/1111 atomic regions from SNP 154615 to 155215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,455 DEBUG Processing 554/996 atomic regions from SNP 166117 to 166717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,506 DEBUG Processing 671/833 atomic regions from SNP 201027 to 201627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,608 DEBUG Processing 657/851 atomic regions from SNP 196841 to 197441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,628 DEBUG Processing 124/219 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:28,718 DEBUG Processing 458/630 atomic regions from SNP 137278 to 137878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,846 DEBUG Processing 555/996 atomic regions from SNP 166417 to 167017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,882 DEBUG Processing 517/1111 atomic regions from SNP 154915 to 155515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,890 DEBUG Processing 672/833 atomic regions from SNP 201327 to 201927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,998 DEBUG Processing 125/219 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:29,004 DEBUG Processing 658/851 atomic regions from SNP 197141 to 197741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,052 DEBUG Processing 459/630 atomic regions from SNP 137578 to 138178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,163 DEBUG Processing 556/996 atomic regions from SNP 166717 to 167317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,194 DEBUG Processing 673/833 atomic regions from SNP 201627 to 202227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,250 DEBUG Processing 518/1111 atomic regions from SNP 155215 to 155815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,305 DEBUG Processing 126/219 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:29,337 DEBUG Processing 659/851 atomic regions from SNP 197441 to 198041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,356 DEBUG Processing 460/630 atomic regions from SNP 137878 to 138478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,491 DEBUG Processing 557/996 atomic regions from SNP 167017 to 167617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,549 DEBUG Processing 674/833 atomic regions from SNP 201927 to 202527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,624 DEBUG Processing 127/219 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:29,638 DEBUG Processing 519/1111 atomic regions from SNP 155515 to 156115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,678 DEBUG Processing 461/630 atomic regions from SNP 138178 to 138778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,678 DEBUG Processing 660/851 atomic regions from SNP 197741 to 198341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,759 DEBUG Processing 558/996 atomic regions from SNP 167317 to 167917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,837 DEBUG Processing 675/833 atomic regions from SNP 202227 to 202827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,943 DEBUG Processing 128/219 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:29,994 DEBUG Processing 462/630 atomic regions from SNP 138478 to 139078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,010 DEBUG Processing 661/851 atomic regions from SNP 198041 to 198641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,047 DEBUG Processing 520/1111 atomic regions from SNP 155815 to 156415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,056 DEBUG Processing 559/996 atomic regions from SNP 167617 to 168217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,070 DEBUG Processing 676/833 atomic regions from SNP 202527 to 203127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,169 DEBUG Processing 129/219 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:30,234 DEBUG Processing 463/630 atomic regions from SNP 138778 to 139378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,267 DEBUG Processing 662/851 atomic regions from SNP 198341 to 198941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,364 DEBUG Processing 677/833 atomic regions from SNP 202827 to 203427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,378 DEBUG Processing 560/996 atomic regions from SNP 167917 to 168517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,394 DEBUG Processing 521/1111 atomic regions from SNP 156115 to 156715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,459 DEBUG Processing 130/219 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:30,521 DEBUG Processing 464/630 atomic regions from SNP 139078 to 139678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,583 DEBUG Processing 663/851 atomic regions from SNP 198641 to 199241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,678 DEBUG Processing 678/833 atomic regions from SNP 203127 to 203727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,704 DEBUG Processing 561/996 atomic regions from SNP 168217 to 168817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,761 DEBUG Processing 131/219 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:30,780 DEBUG Processing 522/1111 atomic regions from SNP 156415 to 157015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,831 DEBUG Processing 465/630 atomic regions from SNP 139378 to 139978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,923 DEBUG Processing 664/851 atomic regions from SNP 198941 to 199541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,011 DEBUG Processing 679/833 atomic regions from SNP 203427 to 204027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,055 DEBUG Processing 562/996 atomic regions from SNP 168517 to 169117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,091 DEBUG Processing 132/219 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:31,153 DEBUG Processing 466/630 atomic regions from SNP 139678 to 140278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,200 DEBUG Processing 523/1111 atomic regions from SNP 156715 to 157315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,275 DEBUG Processing 665/851 atomic regions from SNP 199241 to 199841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,369 DEBUG Processing 680/833 atomic regions from SNP 203727 to 204327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,405 DEBUG Processing 133/219 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:31,410 DEBUG Processing 563/996 atomic regions from SNP 168817 to 169417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,436 DEBUG Processing 467/630 atomic regions from SNP 139978 to 140578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,541 DEBUG Processing 524/1111 atomic regions from SNP 157015 to 157615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,559 DEBUG Processing 666/851 atomic regions from SNP 199541 to 200141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,706 DEBUG Processing 681/833 atomic regions from SNP 204027 to 204627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,747 DEBUG Processing 134/219 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:31,767 DEBUG Processing 564/996 atomic regions from SNP 169117 to 169717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,772 DEBUG Processing 468/630 atomic regions from SNP 140278 to 140878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,872 DEBUG Processing 667/851 atomic regions from SNP 199841 to 200441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,897 DEBUG Processing 525/1111 atomic regions from SNP 157315 to 157915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,022 DEBUG Processing 682/833 atomic regions from SNP 204327 to 204927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,064 DEBUG Processing 135/219 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:32,113 DEBUG Processing 469/630 atomic regions from SNP 140578 to 141178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,133 DEBUG Processing 565/996 atomic regions from SNP 169417 to 170017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,211 DEBUG Processing 668/851 atomic regions from SNP 200141 to 200741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,255 DEBUG Processing 526/1111 atomic regions from SNP 157615 to 158215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,291 DEBUG Processing 683/833 atomic regions from SNP 204627 to 205227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,332 DEBUG Processing 136/219 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:32,419 DEBUG Processing 470/630 atomic regions from SNP 140878 to 141478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,458 DEBUG Processing 566/996 atomic regions from SNP 169717 to 170317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,518 DEBUG Processing 669/851 atomic regions from SNP 200441 to 201041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,562 DEBUG Processing 684/833 atomic regions from SNP 204927 to 205527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,568 DEBUG Processing 137/219 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:32,575 DEBUG Processing 527/1111 atomic regions from SNP 157915 to 158515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,664 DEBUG Processing 471/630 atomic regions from SNP 141178 to 141778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,712 DEBUG Processing 567/996 atomic regions from SNP 170017 to 170617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,761 DEBUG Processing 670/851 atomic regions from SNP 200741 to 201341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,790 DEBUG Processing 138/219 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:32,795 DEBUG Processing 685/833 atomic regions from SNP 205227 to 205827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,845 DEBUG Processing 528/1111 atomic regions from SNP 158215 to 158815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,897 DEBUG Processing 472/630 atomic regions from SNP 141478 to 142078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,966 DEBUG Processing 568/996 atomic regions from SNP 170317 to 170917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,988 DEBUG Processing 671/851 atomic regions from SNP 201041 to 201641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,003 DEBUG Processing 139/219 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:33,017 DEBUG Processing 686/833 atomic regions from SNP 205527 to 206127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,108 DEBUG Processing 529/1111 atomic regions from SNP 158515 to 159115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,136 DEBUG Processing 473/630 atomic regions from SNP 141778 to 142378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,213 DEBUG Processing 672/851 atomic regions from SNP 201341 to 201941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,220 DEBUG Processing 569/996 atomic regions from SNP 170617 to 171217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,221 DEBUG Processing 140/219 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:33,239 DEBUG Processing 687/833 atomic regions from SNP 205827 to 206427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,374 DEBUG Processing 530/1111 atomic regions from SNP 158815 to 159415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,376 DEBUG Processing 474/630 atomic regions from SNP 142078 to 142678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,438 DEBUG Processing 141/219 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:33,445 DEBUG Processing 673/851 atomic regions from SNP 201641 to 202241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,463 DEBUG Processing 688/833 atomic regions from SNP 206127 to 206727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,484 DEBUG Processing 570/996 atomic regions from SNP 170917 to 171517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,629 DEBUG Processing 475/630 atomic regions from SNP 142378 to 142978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,640 DEBUG Processing 531/1111 atomic regions from SNP 159115 to 159715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,662 DEBUG Processing 142/219 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:33,672 DEBUG Processing 674/851 atomic regions from SNP 201941 to 202541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,686 DEBUG Processing 689/833 atomic regions from SNP 206427 to 207027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,754 DEBUG Processing 571/996 atomic regions from SNP 171217 to 171817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,873 DEBUG Processing 476/630 atomic regions from SNP 142678 to 143278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,887 DEBUG Processing 143/219 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:33,904 DEBUG Processing 675/851 atomic regions from SNP 202241 to 202841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,908 DEBUG Processing 532/1111 atomic regions from SNP 159415 to 160015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,914 DEBUG Processing 690/833 atomic regions from SNP 206727 to 207327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,008 DEBUG Processing 572/996 atomic regions from SNP 171517 to 172117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,115 DEBUG Processing 144/219 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:34,127 DEBUG Processing 477/630 atomic regions from SNP 142978 to 143578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,138 DEBUG Processing 676/851 atomic regions from SNP 202541 to 203141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,145 DEBUG Processing 691/833 atomic regions from SNP 207027 to 207627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,174 DEBUG Processing 533/1111 atomic regions from SNP 159715 to 160315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,258 DEBUG Processing 573/996 atomic regions from SNP 171817 to 172417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,341 DEBUG Processing 145/219 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:34,381 DEBUG Processing 478/630 atomic regions from SNP 143278 to 143878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,382 DEBUG Processing 677/851 atomic regions from SNP 202841 to 203441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,391 DEBUG Processing 692/833 atomic regions from SNP 207327 to 207927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,447 DEBUG Processing 534/1111 atomic regions from SNP 160015 to 160615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,521 DEBUG Processing 574/996 atomic regions from SNP 172117 to 172717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,594 DEBUG Processing 146/219 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:34,647 DEBUG Processing 479/630 atomic regions from SNP 143578 to 144178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,659 DEBUG Processing 678/851 atomic regions from SNP 203141 to 203741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,672 DEBUG Processing 693/833 atomic regions from SNP 207627 to 208227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,756 DEBUG Processing 535/1111 atomic regions from SNP 160315 to 160915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,811 DEBUG Processing 575/996 atomic regions from SNP 172417 to 173017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,836 DEBUG Processing 147/219 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:34,880 DEBUG Processing 480/630 atomic regions from SNP 143878 to 144478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,890 DEBUG Processing 679/851 atomic regions from SNP 203441 to 204041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,917 DEBUG Processing 694/833 atomic regions from SNP 207927 to 208527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,019 DEBUG Processing 536/1111 atomic regions from SNP 160615 to 161215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,064 DEBUG Processing 148/219 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:35,069 DEBUG Processing 576/996 atomic regions from SNP 172717 to 173317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,110 DEBUG Processing 481/630 atomic regions from SNP 144178 to 144778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,121 DEBUG Processing 680/851 atomic regions from SNP 203741 to 204341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,148 DEBUG Processing 695/833 atomic regions from SNP 208227 to 208827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,282 DEBUG Processing 537/1111 atomic regions from SNP 160915 to 161515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,304 DEBUG Processing 149/219 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:35,341 DEBUG Processing 577/996 atomic regions from SNP 173017 to 173617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,346 DEBUG Processing 482/630 atomic regions from SNP 144478 to 145078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,387 DEBUG Processing 681/851 atomic regions from SNP 204041 to 204641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,390 DEBUG Processing 696/833 atomic regions from SNP 208527 to 209127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,534 DEBUG Processing 150/219 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:35,545 DEBUG Processing 538/1111 atomic regions from SNP 161215 to 161815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,585 DEBUG Processing 483/630 atomic regions from SNP 144778 to 145378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,604 DEBUG Processing 578/996 atomic regions from SNP 173317 to 173917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,637 DEBUG Processing 697/833 atomic regions from SNP 208827 to 209427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,655 DEBUG Processing 682/851 atomic regions from SNP 204341 to 204941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,750 DEBUG Processing 151/219 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:35,805 DEBUG Processing 539/1111 atomic regions from SNP 161515 to 162115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,813 DEBUG Processing 484/630 atomic regions from SNP 145078 to 145678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,863 DEBUG Processing 579/996 atomic regions from SNP 173617 to 174217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,863 DEBUG Processing 698/833 atomic regions from SNP 209127 to 209727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,900 DEBUG Processing 683/851 atomic regions from SNP 204641 to 205241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,963 DEBUG Processing 152/219 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:36,037 DEBUG Processing 485/630 atomic regions from SNP 145378 to 145978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,067 DEBUG Processing 540/1111 atomic regions from SNP 161815 to 162415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,088 DEBUG Processing 699/833 atomic regions from SNP 209427 to 210027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,118 DEBUG Processing 580/996 atomic regions from SNP 173917 to 174517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,159 DEBUG Processing 684/851 atomic regions from SNP 204941 to 205541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,180 DEBUG Processing 153/219 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:36,261 DEBUG Processing 486/630 atomic regions from SNP 145678 to 146278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,316 DEBUG Processing 700/833 atomic regions from SNP 209727 to 210327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,331 DEBUG Processing 541/1111 atomic regions from SNP 162115 to 162715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,377 DEBUG Processing 581/996 atomic regions from SNP 174217 to 174817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,388 DEBUG Processing 685/851 atomic regions from SNP 205241 to 205841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,399 DEBUG Processing 154/219 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:36,483 DEBUG Processing 487/630 atomic regions from SNP 145978 to 146578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,556 DEBUG Processing 701/833 atomic regions from SNP 210027 to 210627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,593 DEBUG Processing 542/1111 atomic regions from SNP 162415 to 163015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,611 DEBUG Processing 155/219 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:36,617 DEBUG Processing 686/851 atomic regions from SNP 205541 to 206141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,625 DEBUG Processing 582/996 atomic regions from SNP 174517 to 175117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,707 DEBUG Processing 488/630 atomic regions from SNP 146278 to 146878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,823 DEBUG Processing 702/833 atomic regions from SNP 210327 to 210927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,837 DEBUG Processing 156/219 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:36,855 DEBUG Processing 687/851 atomic regions from SNP 205841 to 206441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,870 DEBUG Processing 543/1111 atomic regions from SNP 162715 to 163315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,884 DEBUG Processing 583/996 atomic regions from SNP 174817 to 175417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,928 DEBUG Processing 489/630 atomic regions from SNP 146578 to 147178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,052 DEBUG Processing 157/219 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:37,086 DEBUG Processing 703/833 atomic regions from SNP 210627 to 211227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,089 DEBUG Processing 688/851 atomic regions from SNP 206141 to 206741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,132 DEBUG Processing 584/996 atomic regions from SNP 175117 to 175717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,139 DEBUG Processing 544/1111 atomic regions from SNP 163015 to 163615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,171 DEBUG Processing 490/630 atomic regions from SNP 146878 to 147478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,267 DEBUG Processing 158/219 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:37,325 DEBUG Processing 689/851 atomic regions from SNP 206441 to 207041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,346 DEBUG Processing 704/833 atomic regions from SNP 210927 to 211527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,385 DEBUG Processing 585/996 atomic regions from SNP 175417 to 176017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,411 DEBUG Processing 491/630 atomic regions from SNP 147178 to 147778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,411 DEBUG Processing 545/1111 atomic regions from SNP 163315 to 163915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,480 DEBUG Processing 159/219 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:37,555 DEBUG Processing 690/851 atomic regions from SNP 206741 to 207341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,577 DEBUG Processing 705/833 atomic regions from SNP 211227 to 211827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,634 DEBUG Processing 586/996 atomic regions from SNP 175717 to 176317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,661 DEBUG Processing 492/630 atomic regions from SNP 147478 to 148078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,677 DEBUG Processing 546/1111 atomic regions from SNP 163615 to 164215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,696 DEBUG Processing 160/219 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:37,783 DEBUG Processing 691/851 atomic regions from SNP 207041 to 207641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,807 DEBUG Processing 706/833 atomic regions from SNP 211527 to 212127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,890 DEBUG Processing 587/996 atomic regions from SNP 176017 to 176617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,917 DEBUG Processing 161/219 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:37,918 DEBUG Processing 493/630 atomic regions from SNP 147778 to 148378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,941 DEBUG Processing 547/1111 atomic regions from SNP 163915 to 164515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,014 DEBUG Processing 692/851 atomic regions from SNP 207341 to 207941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,033 DEBUG Processing 707/833 atomic regions from SNP 211827 to 212427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,143 DEBUG Processing 162/219 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:38,145 DEBUG Processing 588/996 atomic regions from SNP 176317 to 176917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,179 DEBUG Processing 494/630 atomic regions from SNP 148078 to 148678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,203 DEBUG Processing 548/1111 atomic regions from SNP 164215 to 164815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,249 DEBUG Processing 693/851 atomic regions from SNP 207641 to 208241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,263 DEBUG Processing 708/833 atomic regions from SNP 212127 to 212727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,371 DEBUG Processing 163/219 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:38,412 DEBUG Processing 589/996 atomic regions from SNP 176617 to 177217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,445 DEBUG Processing 495/630 atomic regions from SNP 148378 to 148978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,475 DEBUG Processing 549/1111 atomic regions from SNP 164515 to 165115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,499 DEBUG Processing 709/833 atomic regions from SNP 212427 to 213027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,512 DEBUG Processing 694/851 atomic regions from SNP 207941 to 208541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,602 DEBUG Processing 164/219 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:38,734 DEBUG Processing 590/996 atomic regions from SNP 176917 to 177517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,773 DEBUG Processing 496/630 atomic regions from SNP 148678 to 149278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,844 DEBUG Processing 710/833 atomic regions from SNP 212727 to 213327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,860 DEBUG Processing 550/1111 atomic regions from SNP 164815 to 165415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,881 DEBUG Processing 695/851 atomic regions from SNP 208241 to 208841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,890 DEBUG Processing 165/219 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:39,083 DEBUG Processing 591/996 atomic regions from SNP 177217 to 177817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,113 DEBUG Processing 497/630 atomic regions from SNP 148978 to 149578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,230 DEBUG Processing 711/833 atomic regions from SNP 213027 to 213627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,238 DEBUG Processing 166/219 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:39,268 DEBUG Processing 551/1111 atomic regions from SNP 165115 to 165715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,282 DEBUG Processing 696/851 atomic regions from SNP 208541 to 209141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,452 DEBUG Processing 592/996 atomic regions from SNP 177517 to 178117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,488 DEBUG Processing 498/630 atomic regions from SNP 149278 to 149878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,605 DEBUG Processing 167/219 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:39,625 DEBUG Processing 712/833 atomic regions from SNP 213327 to 213927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,663 DEBUG Processing 697/851 atomic regions from SNP 208841 to 209441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,687 DEBUG Processing 552/1111 atomic regions from SNP 165415 to 166015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,833 DEBUG Processing 593/996 atomic regions from SNP 177817 to 178417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,874 DEBUG Processing 499/630 atomic regions from SNP 149578 to 150178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,003 DEBUG Processing 168/219 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:40,063 DEBUG Processing 713/833 atomic regions from SNP 213627 to 214227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,083 DEBUG Processing 698/851 atomic regions from SNP 209141 to 209741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,144 DEBUG Processing 553/1111 atomic regions from SNP 165715 to 166315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,205 DEBUG Processing 594/996 atomic regions from SNP 178117 to 178717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,271 DEBUG Processing 500/630 atomic regions from SNP 149878 to 150478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,358 DEBUG Processing 169/219 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:40,462 DEBUG Processing 714/833 atomic regions from SNP 213927 to 214527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,488 DEBUG Processing 699/851 atomic regions from SNP 209441 to 210041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,569 DEBUG Processing 554/1111 atomic regions from SNP 166015 to 166615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,596 DEBUG Processing 595/996 atomic regions from SNP 178417 to 179017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,652 DEBUG Processing 501/630 atomic regions from SNP 150178 to 150778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,733 DEBUG Processing 170/219 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:40,862 DEBUG Processing 715/833 atomic regions from SNP 214227 to 214827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,898 DEBUG Processing 700/851 atomic regions from SNP 209741 to 210341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,985 DEBUG Processing 596/996 atomic regions from SNP 178717 to 179317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,992 DEBUG Processing 555/1111 atomic regions from SNP 166315 to 166915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,003 DEBUG Processing 171/219 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:41,004 DEBUG Processing 502/630 atomic regions from SNP 150478 to 151078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,105 DEBUG Processing 716/833 atomic regions from SNP 214527 to 215127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,165 DEBUG Processing 701/851 atomic regions from SNP 210041 to 210641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,296 DEBUG Processing 172/219 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:41,307 DEBUG Processing 597/996 atomic regions from SNP 179017 to 179617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,322 DEBUG Processing 556/1111 atomic regions from SNP 166615 to 167215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,325 DEBUG Processing 503/630 atomic regions from SNP 150778 to 151378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,422 DEBUG Processing 717/833 atomic regions from SNP 214827 to 215427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,483 DEBUG Processing 702/851 atomic regions from SNP 210341 to 210941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,606 DEBUG Processing 173/219 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:41,657 DEBUG Processing 504/630 atomic regions from SNP 151078 to 151678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,663 DEBUG Processing 598/996 atomic regions from SNP 179317 to 179917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,690 DEBUG Processing 557/1111 atomic regions from SNP 166915 to 167515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,775 DEBUG Processing 718/833 atomic regions from SNP 215127 to 215727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,810 DEBUG Processing 703/851 atomic regions from SNP 210641 to 211241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,893 DEBUG Processing 174/219 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:41,949 DEBUG Processing 505/630 atomic regions from SNP 151378 to 151978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,954 DEBUG Processing 599/996 atomic regions from SNP 179617 to 180217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,989 DEBUG Processing 558/1111 atomic regions from SNP 167215 to 167815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,077 DEBUG Processing 719/833 atomic regions from SNP 215427 to 216027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,124 DEBUG Processing 704/851 atomic regions from SNP 210941 to 211541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,214 DEBUG Processing 175/219 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:42,290 DEBUG Processing 506/630 atomic regions from SNP 151678 to 152278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,300 DEBUG Processing 600/996 atomic regions from SNP 179917 to 180517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,354 DEBUG Processing 559/1111 atomic regions from SNP 167515 to 168115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,419 DEBUG Processing 720/833 atomic regions from SNP 215727 to 216327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,461 DEBUG Processing 705/851 atomic regions from SNP 211241 to 211841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,560 DEBUG Processing 176/219 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:42,673 DEBUG Processing 507/630 atomic regions from SNP 151978 to 152578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,686 DEBUG Processing 601/996 atomic regions from SNP 180217 to 180817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,765 DEBUG Processing 560/1111 atomic regions from SNP 167815 to 168415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,796 DEBUG Processing 721/833 atomic regions from SNP 216027 to 216627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,858 DEBUG Processing 706/851 atomic regions from SNP 211541 to 212141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,901 DEBUG Processing 177/219 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:43,078 DEBUG Processing 508/630 atomic regions from SNP 152278 to 152878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,097 DEBUG Processing 602/996 atomic regions from SNP 180517 to 181117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,181 DEBUG Processing 561/1111 atomic regions from SNP 168115 to 168715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,191 DEBUG Processing 722/833 atomic regions from SNP 216327 to 216927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,259 DEBUG Processing 707/851 atomic regions from SNP 211841 to 212441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,261 DEBUG Processing 178/219 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:43,493 DEBUG Processing 509/630 atomic regions from SNP 152578 to 153178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,504 DEBUG Processing 603/996 atomic regions from SNP 180817 to 181417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,556 DEBUG Processing 723/833 atomic regions from SNP 216627 to 217227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,562 DEBUG Processing 179/219 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:43,574 DEBUG Processing 708/851 atomic regions from SNP 212141 to 212741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,577 DEBUG Processing 562/1111 atomic regions from SNP 168415 to 169015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,911 DEBUG Processing 604/996 atomic regions from SNP 181117 to 181717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,913 DEBUG Processing 510/630 atomic regions from SNP 152878 to 153478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,928 DEBUG Processing 180/219 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:43,950 DEBUG Processing 709/851 atomic regions from SNP 212441 to 213041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,952 DEBUG Processing 724/833 atomic regions from SNP 216927 to 217527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,996 DEBUG Processing 563/1111 atomic regions from SNP 168715 to 169315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,186 DEBUG Processing 511/630 atomic regions from SNP 153178 to 153778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,197 DEBUG Processing 181/219 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:44,198 DEBUG Processing 605/996 atomic regions from SNP 181417 to 182017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,247 DEBUG Processing 725/833 atomic regions from SNP 217227 to 217827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,252 DEBUG Processing 710/851 atomic regions from SNP 212741 to 213341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,360 DEBUG Processing 564/1111 atomic regions from SNP 169015 to 169615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,471 DEBUG Processing 182/219 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:44,475 DEBUG Processing 512/630 atomic regions from SNP 153478 to 154078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,509 DEBUG Processing 606/996 atomic regions from SNP 181717 to 182317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,552 DEBUG Processing 726/833 atomic regions from SNP 217527 to 218127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,579 DEBUG Processing 711/851 atomic regions from SNP 213041 to 213641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,696 DEBUG Processing 183/219 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:44,696 DEBUG Processing 565/1111 atomic regions from SNP 169315 to 169915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,740 DEBUG Processing 513/630 atomic regions from SNP 153778 to 154378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,763 DEBUG Processing 607/996 atomic regions from SNP 182017 to 182617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,776 DEBUG Processing 727/833 atomic regions from SNP 217827 to 218427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,813 DEBUG Processing 712/851 atomic regions from SNP 213341 to 213941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,967 DEBUG Processing 184/219 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:45,034 DEBUG Processing 514/630 atomic regions from SNP 154078 to 154678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,036 DEBUG Processing 566/1111 atomic regions from SNP 169615 to 170215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,051 DEBUG Processing 608/996 atomic regions from SNP 182317 to 182917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,080 DEBUG Processing 728/833 atomic regions from SNP 218127 to 218727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,085 DEBUG Processing 713/851 atomic regions from SNP 213641 to 214241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,258 DEBUG Processing 185/219 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:45,329 DEBUG Processing 515/630 atomic regions from SNP 154378 to 154978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,361 DEBUG Processing 609/996 atomic regions from SNP 182617 to 183217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,362 DEBUG Processing 714/851 atomic regions from SNP 213941 to 214541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,367 DEBUG Processing 567/1111 atomic regions from SNP 169915 to 170515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,386 DEBUG Processing 729/833 atomic regions from SNP 218427 to 219027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,543 DEBUG Processing 186/219 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:45,714 DEBUG Processing 516/630 atomic regions from SNP 154678 to 155278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,731 DEBUG Processing 715/851 atomic regions from SNP 214241 to 214841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,745 DEBUG Processing 610/996 atomic regions from SNP 182917 to 183517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,763 DEBUG Processing 730/833 atomic regions from SNP 218727 to 219327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,790 DEBUG Processing 568/1111 atomic regions from SNP 170215 to 170815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,831 DEBUG Processing 187/219 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:46,124 DEBUG Processing 517/630 atomic regions from SNP 154978 to 155578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,135 DEBUG Processing 716/851 atomic regions from SNP 214541 to 215141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,153 DEBUG Processing 611/996 atomic regions from SNP 183217 to 183817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,192 DEBUG Processing 731/833 atomic regions from SNP 219027 to 219627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,194 DEBUG Processing 188/219 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:46,231 DEBUG Processing 569/1111 atomic regions from SNP 170515 to 171115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,463 DEBUG Processing 717/851 atomic regions from SNP 214841 to 215441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,482 DEBUG Processing 518/630 atomic regions from SNP 155278 to 155878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,500 DEBUG Processing 612/996 atomic regions from SNP 183517 to 184117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,514 DEBUG Processing 189/219 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:46,532 DEBUG Processing 732/833 atomic regions from SNP 219327 to 219927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,569 DEBUG Processing 570/1111 atomic regions from SNP 170815 to 171415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,845 DEBUG Processing 718/851 atomic regions from SNP 215141 to 215741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,873 DEBUG Processing 190/219 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:46,877 DEBUG Processing 519/630 atomic regions from SNP 155578 to 156178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,896 DEBUG Processing 613/996 atomic regions from SNP 183817 to 184417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,920 DEBUG Processing 733/833 atomic regions from SNP 219627 to 220227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,957 DEBUG Processing 571/1111 atomic regions from SNP 171115 to 171715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,238 DEBUG Processing 719/851 atomic regions from SNP 215441 to 216041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,255 DEBUG Processing 191/219 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:47,264 DEBUG Processing 520/630 atomic regions from SNP 155878 to 156478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,310 DEBUG Processing 614/996 atomic regions from SNP 184117 to 184717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,357 DEBUG Processing 734/833 atomic regions from SNP 219927 to 220527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,390 DEBUG Processing 572/1111 atomic regions from SNP 171415 to 172015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,581 DEBUG Processing 192/219 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:47,584 DEBUG Processing 720/851 atomic regions from SNP 215741 to 216341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,593 DEBUG Processing 521/630 atomic regions from SNP 156178 to 156778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,635 DEBUG Processing 615/996 atomic regions from SNP 184417 to 185017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,690 DEBUG Processing 735/833 atomic regions from SNP 220227 to 220827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,730 DEBUG Processing 573/1111 atomic regions from SNP 171715 to 172315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,903 DEBUG Processing 193/219 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:47,930 DEBUG Processing 522/630 atomic regions from SNP 156478 to 157078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,945 DEBUG Processing 721/851 atomic regions from SNP 216041 to 216641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,988 DEBUG Processing 616/996 atomic regions from SNP 184717 to 185317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,041 DEBUG Processing 736/833 atomic regions from SNP 220527 to 221127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,118 DEBUG Processing 574/1111 atomic regions from SNP 172015 to 172615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,213 DEBUG Processing 194/219 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:48,263 DEBUG Processing 523/630 atomic regions from SNP 156778 to 157378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,298 DEBUG Processing 722/851 atomic regions from SNP 216341 to 216941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,359 DEBUG Processing 617/996 atomic regions from SNP 185017 to 185617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,408 DEBUG Processing 737/833 atomic regions from SNP 220827 to 221427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,513 DEBUG Processing 195/219 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:48,517 DEBUG Processing 575/1111 atomic regions from SNP 172315 to 172915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,559 DEBUG Processing 524/630 atomic regions from SNP 157078 to 157678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,607 DEBUG Processing 723/851 atomic regions from SNP 216641 to 217241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,669 DEBUG Processing 618/996 atomic regions from SNP 185317 to 185917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,692 DEBUG Processing 738/833 atomic regions from SNP 221127 to 221727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,803 DEBUG Processing 196/219 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:48,847 DEBUG Processing 525/630 atomic regions from SNP 157378 to 157978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,888 DEBUG Processing 576/1111 atomic regions from SNP 172615 to 173215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,915 DEBUG Processing 724/851 atomic regions from SNP 216941 to 217541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,975 DEBUG Processing 619/996 atomic regions from SNP 185617 to 186217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,976 DEBUG Processing 739/833 atomic regions from SNP 221427 to 222027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,028 DEBUG Processing 197/219 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:49,082 DEBUG Processing 526/630 atomic regions from SNP 157678 to 158278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,168 DEBUG Processing 577/1111 atomic regions from SNP 172915 to 173515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,171 DEBUG Processing 725/851 atomic regions from SNP 217241 to 217841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,240 DEBUG Processing 620/996 atomic regions from SNP 185917 to 186517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,247 DEBUG Processing 740/833 atomic regions from SNP 221727 to 222327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,254 DEBUG Processing 198/219 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:49,319 DEBUG Processing 527/630 atomic regions from SNP 157978 to 158578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,436 DEBUG Processing 726/851 atomic regions from SNP 217541 to 218141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,464 DEBUG Processing 578/1111 atomic regions from SNP 173215 to 173815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,488 DEBUG Processing 199/219 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:49,506 DEBUG Processing 621/996 atomic regions from SNP 186217 to 186817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,516 DEBUG Processing 741/833 atomic regions from SNP 222027 to 222627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,547 DEBUG Processing 528/630 atomic regions from SNP 158278 to 158878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,672 DEBUG Processing 727/851 atomic regions from SNP 217841 to 218441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,715 DEBUG Processing 200/219 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:49,737 DEBUG Processing 579/1111 atomic regions from SNP 173515 to 174115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,748 DEBUG Processing 742/833 atomic regions from SNP 222327 to 222927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,765 DEBUG Processing 622/996 atomic regions from SNP 186517 to 187117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,796 DEBUG Processing 529/630 atomic regions from SNP 158578 to 159178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,927 DEBUG Processing 728/851 atomic regions from SNP 218141 to 218741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,932 DEBUG Processing 201/219 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:49,982 DEBUG Processing 743/833 atomic regions from SNP 222627 to 223227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,005 DEBUG Processing 580/1111 atomic regions from SNP 173815 to 174415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,021 DEBUG Processing 623/996 atomic regions from SNP 186817 to 187417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,034 DEBUG Processing 530/630 atomic regions from SNP 158878 to 159478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,145 DEBUG Processing 202/219 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:50,183 DEBUG Processing 729/851 atomic regions from SNP 218441 to 219041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,209 DEBUG Processing 744/833 atomic regions from SNP 222927 to 223527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,267 DEBUG Processing 581/1111 atomic regions from SNP 174115 to 174715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,275 DEBUG Processing 624/996 atomic regions from SNP 187117 to 187717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,281 DEBUG Processing 531/630 atomic regions from SNP 159178 to 159778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,358 DEBUG Processing 203/219 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:50,412 DEBUG Processing 730/851 atomic regions from SNP 218741 to 219341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,434 DEBUG Processing 745/833 atomic regions from SNP 223227 to 223827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,525 DEBUG Processing 625/996 atomic regions from SNP 187417 to 188017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,531 DEBUG Processing 582/1111 atomic regions from SNP 174415 to 175015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,533 DEBUG Processing 532/630 atomic regions from SNP 159478 to 160078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,577 DEBUG Processing 204/219 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:50,661 DEBUG Processing 731/851 atomic regions from SNP 219041 to 219641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,671 DEBUG Processing 746/833 atomic regions from SNP 223527 to 224127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,761 DEBUG Processing 533/630 atomic regions from SNP 159778 to 160378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,779 DEBUG Processing 626/996 atomic regions from SNP 187717 to 188317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,798 DEBUG Processing 583/1111 atomic regions from SNP 174715 to 175315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,800 DEBUG Processing 205/219 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:50,894 DEBUG Processing 732/851 atomic regions from SNP 219341 to 219941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,909 DEBUG Processing 747/833 atomic regions from SNP 223827 to 224427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,985 DEBUG Processing 534/630 atomic regions from SNP 160078 to 160678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,024 DEBUG Processing 206/219 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:51,031 DEBUG Processing 627/996 atomic regions from SNP 188017 to 188617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,065 DEBUG Processing 584/1111 atomic regions from SNP 175015 to 175615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,117 DEBUG Processing 733/851 atomic regions from SNP 219641 to 220241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,158 DEBUG Processing 748/833 atomic regions from SNP 224127 to 224727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,209 DEBUG Processing 535/630 atomic regions from SNP 160378 to 160978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,271 DEBUG Processing 207/219 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:51,313 DEBUG Processing 628/996 atomic regions from SNP 188317 to 188917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,346 DEBUG Processing 585/1111 atomic regions from SNP 175315 to 175915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,382 DEBUG Processing 734/851 atomic regions from SNP 219941 to 220541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,437 DEBUG Processing 749/833 atomic regions from SNP 224427 to 225027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,450 DEBUG Processing 536/630 atomic regions from SNP 160678 to 161278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,529 DEBUG Processing 208/219 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:51,597 DEBUG Processing 629/996 atomic regions from SNP 188617 to 189217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,682 DEBUG Processing 735/851 atomic regions from SNP 220241 to 220841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,702 DEBUG Processing 586/1111 atomic regions from SNP 175615 to 176215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,747 DEBUG Processing 750/833 atomic regions from SNP 224727 to 225327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,758 DEBUG Processing 537/630 atomic regions from SNP 160978 to 161578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,786 DEBUG Processing 209/219 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:51,882 DEBUG Processing 630/996 atomic regions from SNP 188917 to 189517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,922 DEBUG Processing 736/851 atomic regions from SNP 220541 to 221141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,980 DEBUG Processing 587/1111 atomic regions from SNP 175915 to 176515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,006 DEBUG Processing 751/833 atomic regions from SNP 225027 to 225627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,008 DEBUG Processing 210/219 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:52,014 DEBUG Processing 538/630 atomic regions from SNP 161278 to 161878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,144 DEBUG Processing 631/996 atomic regions from SNP 189217 to 189817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,158 DEBUG Processing 737/851 atomic regions from SNP 220841 to 221441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,231 DEBUG Processing 211/219 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:52,246 DEBUG Processing 752/833 atomic regions from SNP 225327 to 225927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,251 DEBUG Processing 539/630 atomic regions from SNP 161578 to 162178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,253 DEBUG Processing 588/1111 atomic regions from SNP 176215 to 176815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,386 DEBUG Processing 738/851 atomic regions from SNP 221141 to 221741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,391 DEBUG Processing 632/996 atomic regions from SNP 189517 to 190117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,450 DEBUG Processing 212/219 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:52,489 DEBUG Processing 540/630 atomic regions from SNP 161878 to 162478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,501 DEBUG Processing 753/833 atomic regions from SNP 225627 to 226227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,542 DEBUG Processing 589/1111 atomic regions from SNP 176515 to 177115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,611 DEBUG Processing 739/851 atomic regions from SNP 221441 to 222041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,635 DEBUG Processing 633/996 atomic regions from SNP 189817 to 190417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,664 DEBUG Processing 213/219 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:52,718 DEBUG Processing 541/630 atomic regions from SNP 162178 to 162778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,729 DEBUG Processing 754/833 atomic regions from SNP 225927 to 226527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,807 DEBUG Processing 590/1111 atomic regions from SNP 176815 to 177415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,842 DEBUG Processing 740/851 atomic regions from SNP 221741 to 222341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,878 DEBUG Processing 214/219 atomic regions from SNP 64113 to 64714 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:52,881 DEBUG Processing 634/996 atomic regions from SNP 190117 to 190717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,939 DEBUG Processing 542/630 atomic regions from SNP 162478 to 163078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,957 DEBUG Processing 755/833 atomic regions from SNP 226227 to 226827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,072 DEBUG Processing 591/1111 atomic regions from SNP 177115 to 177715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,077 DEBUG Processing 741/851 atomic regions from SNP 222041 to 222641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,090 DEBUG Processing 215/219 atomic regions from SNP 64414 to 65015 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:53,127 DEBUG Processing 635/996 atomic regions from SNP 190417 to 191017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,163 DEBUG Processing 543/630 atomic regions from SNP 162778 to 163378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,185 DEBUG Processing 756/833 atomic regions from SNP 226527 to 227127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,309 DEBUG Processing 216/219 atomic regions from SNP 64715 to 65316 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:53,312 DEBUG Processing 742/851 atomic regions from SNP 222341 to 222941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,340 DEBUG Processing 592/1111 atomic regions from SNP 177415 to 178015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,382 DEBUG Processing 636/996 atomic regions from SNP 190717 to 191317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,389 DEBUG Processing 544/630 atomic regions from SNP 163078 to 163678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,413 DEBUG Processing 757/833 atomic regions from SNP 226827 to 227427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,526 DEBUG Processing 217/219 atomic regions from SNP 65016 to 65617 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:53,547 DEBUG Processing 743/851 atomic regions from SNP 222641 to 223241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,605 DEBUG Processing 593/1111 atomic regions from SNP 177715 to 178315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,614 DEBUG Processing 545/630 atomic regions from SNP 163378 to 163978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,634 DEBUG Processing 637/996 atomic regions from SNP 191017 to 191617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,637 DEBUG Processing 758/833 atomic regions from SNP 227127 to 227727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,738 DEBUG Processing 218/219 atomic regions from SNP 65317 to 65917 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:53,774 DEBUG Processing 744/851 atomic regions from SNP 222941 to 223541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,845 DEBUG Processing 546/630 atomic regions from SNP 163678 to 164278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,869 DEBUG Processing 594/1111 atomic regions from SNP 178015 to 178615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,876 DEBUG Processing 759/833 atomic regions from SNP 227427 to 228027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,891 DEBUG Processing 638/996 atomic regions from SNP 191317 to 191917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,945 DEBUG Processing 219/219 atomic regions from SNP 65617 to 66217 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:53,999 DEBUG Processing 745/851 atomic regions from SNP 223241 to 223841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,056 DEBUG Unique SNPs positions in subchromosome 6: 66218 2025-01-31 09:43:54,099 DEBUG Processing 547/630 atomic regions from SNP 163978 to 164578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,126 DEBUG Processing 760/833 atomic regions from SNP 227727 to 228327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,129 DEBUG Processing 595/1111 atomic regions from SNP 178315 to 178915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,135 DEBUG Subchromosome time: 63.199858359992504, subchromosome SNPs: 66218 2025-01-31 09:43:54,135 DEBUG Estimated BADs: [1.41, 11.25, 2.81, 1.41, 0.00, 2.81, 1.41, 14.07, 1.41, 1.41, 4.22, 0.70, 2.81, 0.70, 0.35, 1.41] SNP counts: [3839, 772, 6648, 20935, 50, 419, 23697, 117, 6179, 28393, 3818, 24660, 24055, 25014, 11313, 54905] SNP IDs counts: [3839, 772, 6648, 20935, 50, 419, 23697, 117, 6179, 28393, 3818, 24660, 24055, 25014, 11313, 54905] Critical gap: 761869bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 7.96Mbp, 11.99Mbp, 26.91Mbp[2.10Mbp], 29.68Mbp[1.45Mbp], 34.59Mbp[0.88Mbp], 50.58Mbp, 50.64Mbp, 54.27Mbp[0.89Mbp], 73.22Mbp, 75.67Mbp, 91.31Mbp, 105.99Mbp, 124.25Mbp[1.75Mbp], 133.85Mbp, 171.03Mbp] 2025-01-31 09:43:54,135 DEBUG chrX time: 63.20038623991422 s 2025-01-31 09:43:54,150 DEBUG Processing 639/996 atomic regions from SNP 191617 to 192217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,223 DEBUG Processing 746/851 atomic regions from SNP 223541 to 224141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,306 DEBUG chrX: Fitting background model for 15 segments 2025-01-31 09:43:54,350 DEBUG Processing 548/630 atomic regions from SNP 164278 to 164878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,362 DEBUG Processing 761/833 atomic regions from SNP 228027 to 228627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,395 DEBUG Processing 596/1111 atomic regions from SNP 178615 to 179215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,405 DEBUG Processing 640/996 atomic regions from SNP 191917 to 192517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,448 DEBUG Processing 747/851 atomic regions from SNP 223841 to 224441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,602 DEBUG Processing 549/630 atomic regions from SNP 164578 to 165178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,612 DEBUG Processing 762/833 atomic regions from SNP 228327 to 228927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,656 DEBUG Processing 641/996 atomic regions from SNP 192217 to 192817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,659 DEBUG Processing 597/1111 atomic regions from SNP 178915 to 179515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,677 DEBUG Processing 748/851 atomic regions from SNP 224141 to 224741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,849 DEBUG Processing 550/630 atomic regions from SNP 164878 to 165478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,866 DEBUG Processing 763/833 atomic regions from SNP 228627 to 229227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,903 DEBUG Processing 642/996 atomic regions from SNP 192517 to 193117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,910 DEBUG Processing 749/851 atomic regions from SNP 224441 to 225041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,925 DEBUG Processing 598/1111 atomic regions from SNP 179215 to 179815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,074 DEBUG Processing 551/630 atomic regions from SNP 165178 to 165778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,094 DEBUG Processing 764/833 atomic regions from SNP 228927 to 229527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,141 DEBUG Processing 750/851 atomic regions from SNP 224741 to 225341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,148 DEBUG Processing 643/996 atomic regions from SNP 192817 to 193417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,190 DEBUG Processing 599/1111 atomic regions from SNP 179515 to 180115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,311 DEBUG Processing 552/630 atomic regions from SNP 165478 to 166078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,318 DEBUG Processing 765/833 atomic regions from SNP 229227 to 229827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,369 DEBUG Processing 751/851 atomic regions from SNP 225041 to 225641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,392 DEBUG Processing 644/996 atomic regions from SNP 193117 to 193717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,449 DEBUG Processing 600/1111 atomic regions from SNP 179815 to 180415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,544 DEBUG Processing 553/630 atomic regions from SNP 165778 to 166378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,556 DEBUG Processing 766/833 atomic regions from SNP 229527 to 230127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,600 DEBUG Processing 752/851 atomic regions from SNP 225341 to 225941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,638 DEBUG Processing 645/996 atomic regions from SNP 193417 to 194017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,708 DEBUG Processing 601/1111 atomic regions from SNP 180115 to 180715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,790 DEBUG Processing 554/630 atomic regions from SNP 166078 to 166678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,802 DEBUG Processing 767/833 atomic regions from SNP 229827 to 230427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,830 DEBUG Processing 753/851 atomic regions from SNP 225641 to 226241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,884 DEBUG Processing 646/996 atomic regions from SNP 193717 to 194317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,966 DEBUG Processing 602/1111 atomic regions from SNP 180415 to 181015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,008 DEBUG Processing 555/630 atomic regions from SNP 166378 to 166978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,059 DEBUG Processing 768/833 atomic regions from SNP 230127 to 230727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,059 DEBUG Processing 754/851 atomic regions from SNP 225941 to 226541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,135 DEBUG Processing 647/996 atomic regions from SNP 194017 to 194617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,221 DEBUG Processing 603/1111 atomic regions from SNP 180715 to 181315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,227 DEBUG Processing 556/630 atomic regions from SNP 166678 to 167278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,290 DEBUG Processing 755/851 atomic regions from SNP 226241 to 226841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,299 DEBUG Processing 769/833 atomic regions from SNP 230427 to 231027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,385 DEBUG Processing 648/996 atomic regions from SNP 194317 to 194917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,453 DEBUG Processing 557/630 atomic regions from SNP 166978 to 167578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,481 DEBUG Processing 604/1111 atomic regions from SNP 181015 to 181615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,527 DEBUG Processing 756/851 atomic regions from SNP 226541 to 227141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,535 DEBUG Processing 770/833 atomic regions from SNP 230727 to 231327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,633 DEBUG Processing 649/996 atomic regions from SNP 194617 to 195217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,673 DEBUG Processing 558/630 atomic regions from SNP 167278 to 167878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,739 DEBUG Processing 605/1111 atomic regions from SNP 181315 to 181915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,760 DEBUG Processing 757/851 atomic regions from SNP 226841 to 227441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,765 DEBUG Processing 771/833 atomic regions from SNP 231027 to 231627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,876 DEBUG Processing 650/996 atomic regions from SNP 194917 to 195517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,891 DEBUG Processing 559/630 atomic regions from SNP 167578 to 168178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,997 DEBUG Processing 758/851 atomic regions from SNP 227141 to 227741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,998 DEBUG Processing 772/833 atomic regions from SNP 231327 to 231927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,005 DEBUG Processing 606/1111 atomic regions from SNP 181615 to 182215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,110 DEBUG Processing 560/630 atomic regions from SNP 167878 to 168478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,121 DEBUG Processing 651/996 atomic regions from SNP 195217 to 195817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,232 DEBUG Processing 773/833 atomic regions from SNP 231627 to 232227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,236 DEBUG Processing 759/851 atomic regions from SNP 227441 to 228041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,276 DEBUG Processing 607/1111 atomic regions from SNP 181915 to 182515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,333 DEBUG Processing 561/630 atomic regions from SNP 168178 to 168778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,370 DEBUG Processing 652/996 atomic regions from SNP 195517 to 196117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,469 DEBUG Processing 774/833 atomic regions from SNP 231927 to 232527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,472 DEBUG Processing 760/851 atomic regions from SNP 227741 to 228341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,546 DEBUG Processing 608/1111 atomic regions from SNP 182215 to 182815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,556 DEBUG Processing 562/630 atomic regions from SNP 168478 to 169078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,621 DEBUG Processing 653/996 atomic regions from SNP 195817 to 196417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,704 DEBUG Processing 775/833 atomic regions from SNP 232227 to 232827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,707 DEBUG Processing 761/851 atomic regions from SNP 228041 to 228641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,775 DEBUG Processing 563/630 atomic regions from SNP 168778 to 169378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,806 DEBUG Processing 609/1111 atomic regions from SNP 182515 to 183115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,880 DEBUG Processing 654/996 atomic regions from SNP 196117 to 196717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,943 DEBUG Processing 776/833 atomic regions from SNP 232527 to 233127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,948 DEBUG Processing 762/851 atomic regions from SNP 228341 to 228941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,991 DEBUG Processing 564/630 atomic regions from SNP 169078 to 169678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,067 DEBUG Processing 610/1111 atomic regions from SNP 182815 to 183415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,137 DEBUG Processing 655/996 atomic regions from SNP 196417 to 197017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,188 DEBUG Processing 777/833 atomic regions from SNP 232827 to 233427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,193 DEBUG Processing 763/851 atomic regions from SNP 228641 to 229241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,210 DEBUG Processing 565/630 atomic regions from SNP 169378 to 169978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,321 DEBUG Processing 611/1111 atomic regions from SNP 183115 to 183715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,400 DEBUG Processing 656/996 atomic regions from SNP 196717 to 197317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,429 DEBUG Processing 778/833 atomic regions from SNP 233127 to 233727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,432 DEBUG Processing 566/630 atomic regions from SNP 169678 to 170278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,434 DEBUG Processing 764/851 atomic regions from SNP 228941 to 229541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,580 DEBUG Processing 612/1111 atomic regions from SNP 183415 to 184015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,660 DEBUG Processing 567/630 atomic regions from SNP 169978 to 170578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,673 DEBUG Processing 657/996 atomic regions from SNP 197017 to 197617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,678 DEBUG Processing 765/851 atomic regions from SNP 229241 to 229841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,685 DEBUG Processing 779/833 atomic regions from SNP 233427 to 234027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,844 DEBUG Processing 613/1111 atomic regions from SNP 183715 to 184315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,910 DEBUG Processing 568/630 atomic regions from SNP 170278 to 170878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,943 DEBUG Processing 766/851 atomic regions from SNP 229541 to 230141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,961 DEBUG Processing 780/833 atomic regions from SNP 233727 to 234327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,982 DEBUG Processing 658/996 atomic regions from SNP 197317 to 197917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,200 DEBUG Processing 614/1111 atomic regions from SNP 184015 to 184615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,213 DEBUG Processing 569/630 atomic regions from SNP 170578 to 171178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,254 DEBUG Processing 767/851 atomic regions from SNP 229841 to 230441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,281 DEBUG Processing 781/833 atomic regions from SNP 234027 to 234627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,313 DEBUG Processing 659/996 atomic regions from SNP 197617 to 198217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,537 DEBUG Processing 570/630 atomic regions from SNP 170878 to 171478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,564 DEBUG Processing 615/1111 atomic regions from SNP 184315 to 184915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,604 DEBUG Processing 768/851 atomic regions from SNP 230141 to 230741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,654 DEBUG Processing 782/833 atomic regions from SNP 234327 to 234927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,688 DEBUG Processing 660/996 atomic regions from SNP 197917 to 198517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,798 DEBUG Processing 571/630 atomic regions from SNP 171178 to 171778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,879 DEBUG Processing 616/1111 atomic regions from SNP 184615 to 185215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,942 DEBUG Processing 769/851 atomic regions from SNP 230441 to 231041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,995 DEBUG Processing 783/833 atomic regions from SNP 234627 to 235227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,030 DEBUG Processing 661/996 atomic regions from SNP 198217 to 198817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,096 DEBUG Processing 572/630 atomic regions from SNP 171478 to 172078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,196 DEBUG Processing 617/1111 atomic regions from SNP 184915 to 185515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,243 DEBUG Processing 770/851 atomic regions from SNP 230741 to 231341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,326 DEBUG Processing 784/833 atomic regions from SNP 234927 to 235527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,417 DEBUG Processing 662/996 atomic regions from SNP 198517 to 199117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,428 DEBUG Processing 573/630 atomic regions from SNP 171778 to 172378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,534 DEBUG Processing 618/1111 atomic regions from SNP 185215 to 185815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,540 DEBUG Processing 771/851 atomic regions from SNP 231041 to 231641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,671 DEBUG Processing 785/833 atomic regions from SNP 235227 to 235827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,772 DEBUG Processing 574/630 atomic regions from SNP 172078 to 172678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,801 DEBUG Processing 663/996 atomic regions from SNP 198817 to 199417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,886 DEBUG Processing 772/851 atomic regions from SNP 231341 to 231941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,919 DEBUG Processing 619/1111 atomic regions from SNP 185515 to 186115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,998 DEBUG Processing 786/833 atomic regions from SNP 235527 to 236127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,018 DEBUG Processing 575/630 atomic regions from SNP 172378 to 172978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,079 DEBUG Processing 664/996 atomic regions from SNP 199117 to 199717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,138 DEBUG Processing 773/851 atomic regions from SNP 231641 to 232241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,195 DEBUG Processing 620/1111 atomic regions from SNP 185815 to 186415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,244 DEBUG Processing 787/833 atomic regions from SNP 235827 to 236427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,249 DEBUG Processing 576/630 atomic regions from SNP 172678 to 173278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,347 DEBUG Processing 665/996 atomic regions from SNP 199417 to 200017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,377 DEBUG Processing 774/851 atomic regions from SNP 231941 to 232541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,461 DEBUG Processing 621/1111 atomic regions from SNP 186115 to 186715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,470 DEBUG Processing 577/630 atomic regions from SNP 172978 to 173578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,487 DEBUG Processing 788/833 atomic regions from SNP 236127 to 236727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,607 DEBUG Processing 666/996 atomic regions from SNP 199717 to 200317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,608 DEBUG Processing 775/851 atomic regions from SNP 232241 to 232841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,692 DEBUG Processing 578/630 atomic regions from SNP 173278 to 173878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,716 DEBUG Processing 789/833 atomic regions from SNP 236427 to 237027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,725 DEBUG Processing 622/1111 atomic regions from SNP 186415 to 187015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,839 DEBUG Processing 776/851 atomic regions from SNP 232541 to 233141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,860 DEBUG Processing 667/996 atomic regions from SNP 200017 to 200617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,928 DEBUG Processing 579/630 atomic regions from SNP 173578 to 174178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,962 DEBUG Processing 790/833 atomic regions from SNP 236727 to 237327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,988 DEBUG Processing 623/1111 atomic regions from SNP 186715 to 187315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,065 DEBUG Processing 777/851 atomic regions from SNP 232841 to 233441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,109 DEBUG Processing 668/996 atomic regions from SNP 200317 to 200917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,188 DEBUG Processing 580/630 atomic regions from SNP 173878 to 174478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,207 DEBUG Processing 791/833 atomic regions from SNP 237027 to 237627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,261 DEBUG Processing 624/1111 atomic regions from SNP 187015 to 187615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,290 DEBUG Processing 778/851 atomic regions from SNP 233141 to 233741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,368 DEBUG Processing 669/996 atomic regions from SNP 200617 to 201217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,450 DEBUG Processing 581/630 atomic regions from SNP 174178 to 174778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,464 DEBUG Processing 792/833 atomic regions from SNP 237327 to 237927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,557 DEBUG Processing 779/851 atomic regions from SNP 233441 to 234041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,578 DEBUG Processing 625/1111 atomic regions from SNP 187315 to 187915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,656 DEBUG Processing 670/996 atomic regions from SNP 200917 to 201517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,748 DEBUG Processing 582/630 atomic regions from SNP 174478 to 175078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,753 DEBUG Processing 793/833 atomic regions from SNP 237627 to 238227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,876 DEBUG Processing 780/851 atomic regions from SNP 233741 to 234341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,916 DEBUG Processing 626/1111 atomic regions from SNP 187615 to 188215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,960 DEBUG Processing 671/996 atomic regions from SNP 201217 to 201817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,007 DEBUG Processing 794/833 atomic regions from SNP 237927 to 238527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,008 DEBUG Processing 583/630 atomic regions from SNP 174778 to 175378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,120 DEBUG Processing 781/851 atomic regions from SNP 234041 to 234641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,185 DEBUG Processing 627/1111 atomic regions from SNP 187915 to 188515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,216 DEBUG Processing 672/996 atomic regions from SNP 201517 to 202117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,251 DEBUG Processing 795/833 atomic regions from SNP 238227 to 238827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,259 DEBUG Processing 584/630 atomic regions from SNP 175078 to 175678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,348 DEBUG Processing 782/851 atomic regions from SNP 234341 to 234941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,446 DEBUG Processing 628/1111 atomic regions from SNP 188215 to 188815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,475 DEBUG Processing 673/996 atomic regions from SNP 201817 to 202417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,495 DEBUG Processing 585/630 atomic regions from SNP 175378 to 175978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,503 DEBUG Processing 796/833 atomic regions from SNP 238527 to 239127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,577 DEBUG Processing 783/851 atomic regions from SNP 234641 to 235241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,707 DEBUG Processing 629/1111 atomic regions from SNP 188515 to 189115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,734 DEBUG Processing 797/833 atomic regions from SNP 238827 to 239427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,734 DEBUG Processing 586/630 atomic regions from SNP 175678 to 176278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,752 DEBUG Processing 674/996 atomic regions from SNP 202117 to 202717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,804 DEBUG Processing 784/851 atomic regions from SNP 234941 to 235541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,961 DEBUG Processing 798/833 atomic regions from SNP 239127 to 239727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,968 DEBUG Processing 587/630 atomic regions from SNP 175978 to 176578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,971 DEBUG Processing 630/1111 atomic regions from SNP 188815 to 189415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,010 DEBUG Processing 675/996 atomic regions from SNP 202417 to 203017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,033 DEBUG Processing 785/851 atomic regions from SNP 235241 to 235841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,191 DEBUG Processing 799/833 atomic regions from SNP 239427 to 240027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,221 DEBUG Processing 588/630 atomic regions from SNP 176278 to 176878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,238 DEBUG Processing 631/1111 atomic regions from SNP 189115 to 189715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,266 DEBUG Processing 676/996 atomic regions from SNP 202717 to 203317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,271 DEBUG Processing 786/851 atomic regions from SNP 235541 to 236141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,418 DEBUG Processing 800/833 atomic regions from SNP 239727 to 240327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,462 DEBUG Processing 589/630 atomic regions from SNP 176578 to 177178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,505 DEBUG Processing 632/1111 atomic regions from SNP 189415 to 190015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,509 DEBUG Processing 787/851 atomic regions from SNP 235841 to 236441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,525 DEBUG Processing 677/996 atomic regions from SNP 203017 to 203617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,640 DEBUG Processing 801/833 atomic regions from SNP 240027 to 240627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,696 DEBUG Processing 590/630 atomic regions from SNP 176878 to 177478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,738 DEBUG Processing 788/851 atomic regions from SNP 236141 to 236741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,768 DEBUG Processing 633/1111 atomic regions from SNP 189715 to 190315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,779 DEBUG Processing 678/996 atomic regions from SNP 203317 to 203917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,864 DEBUG Processing 802/833 atomic regions from SNP 240327 to 240927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,925 DEBUG Processing 591/630 atomic regions from SNP 177178 to 177778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,972 DEBUG Processing 789/851 atomic regions from SNP 236441 to 237041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,035 DEBUG Processing 634/1111 atomic regions from SNP 190015 to 190615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,051 DEBUG Processing 679/996 atomic regions from SNP 203617 to 204217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,090 DEBUG Processing 803/833 atomic regions from SNP 240627 to 241227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,150 DEBUG Processing 592/630 atomic regions from SNP 177478 to 178078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,197 DEBUG Processing 790/851 atomic regions from SNP 236741 to 237341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,304 DEBUG Processing 635/1111 atomic regions from SNP 190315 to 190915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,315 DEBUG Processing 680/996 atomic regions from SNP 203917 to 204517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,331 DEBUG Processing 804/833 atomic regions from SNP 240927 to 241527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,392 DEBUG Processing 593/630 atomic regions from SNP 177778 to 178378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,423 DEBUG Processing 791/851 atomic regions from SNP 237041 to 237641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,566 DEBUG Processing 681/996 atomic regions from SNP 204217 to 204817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,572 DEBUG Processing 636/1111 atomic regions from SNP 190615 to 191215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,577 DEBUG Processing 805/833 atomic regions from SNP 241227 to 241827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,633 DEBUG Processing 594/630 atomic regions from SNP 178078 to 178678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,646 DEBUG Processing 792/851 atomic regions from SNP 237341 to 237941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,810 DEBUG Processing 806/833 atomic regions from SNP 241527 to 242127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,816 DEBUG Processing 682/996 atomic regions from SNP 204517 to 205117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,839 DEBUG Processing 637/1111 atomic regions from SNP 190915 to 191515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,863 DEBUG Processing 595/630 atomic regions from SNP 178378 to 178978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,873 DEBUG Processing 793/851 atomic regions from SNP 237641 to 238241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,040 DEBUG Processing 807/833 atomic regions from SNP 241827 to 242427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,066 DEBUG Processing 683/996 atomic regions from SNP 204817 to 205417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,097 DEBUG Processing 596/630 atomic regions from SNP 178678 to 179278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,101 DEBUG Processing 794/851 atomic regions from SNP 237941 to 238541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,104 DEBUG Processing 638/1111 atomic regions from SNP 191215 to 191815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,267 DEBUG Processing 808/833 atomic regions from SNP 242127 to 242727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,312 DEBUG Processing 684/996 atomic regions from SNP 205117 to 205717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,328 DEBUG Processing 795/851 atomic regions from SNP 238241 to 238841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,331 DEBUG Processing 597/630 atomic regions from SNP 178978 to 179578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,365 DEBUG Processing 639/1111 atomic regions from SNP 191515 to 192115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,494 DEBUG Processing 809/833 atomic regions from SNP 242427 to 243027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,558 DEBUG Processing 796/851 atomic regions from SNP 238541 to 239141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,567 DEBUG Processing 685/996 atomic regions from SNP 205417 to 206017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,583 DEBUG Processing 598/630 atomic regions from SNP 179278 to 179878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,632 DEBUG Processing 640/1111 atomic regions from SNP 191815 to 192415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,726 DEBUG Processing 810/833 atomic regions from SNP 242727 to 243327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,790 DEBUG Processing 797/851 atomic regions from SNP 238841 to 239441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,819 DEBUG Processing 686/996 atomic regions from SNP 205717 to 206317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,823 DEBUG Processing 599/630 atomic regions from SNP 179578 to 180178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,898 DEBUG Processing 641/1111 atomic regions from SNP 192115 to 192715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,952 DEBUG Processing 811/833 atomic regions from SNP 243027 to 243627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,014 DEBUG Processing 798/851 atomic regions from SNP 239141 to 239741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,041 DEBUG Processing 600/630 atomic regions from SNP 179878 to 180478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,064 DEBUG Processing 687/996 atomic regions from SNP 206017 to 206617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,163 DEBUG Processing 642/1111 atomic regions from SNP 192415 to 193015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,180 DEBUG Processing 812/833 atomic regions from SNP 243327 to 243927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,241 DEBUG Processing 799/851 atomic regions from SNP 239441 to 240041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,262 DEBUG Processing 601/630 atomic regions from SNP 180178 to 180778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,309 DEBUG Processing 688/996 atomic regions from SNP 206317 to 206917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,407 DEBUG Processing 813/833 atomic regions from SNP 243627 to 244227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,427 DEBUG Processing 643/1111 atomic regions from SNP 192715 to 193315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,469 DEBUG Processing 800/851 atomic regions from SNP 239741 to 240341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,485 DEBUG Processing 602/630 atomic regions from SNP 180478 to 181078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,560 DEBUG Processing 689/996 atomic regions from SNP 206617 to 207217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,641 DEBUG Processing 814/833 atomic regions from SNP 243927 to 244527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,698 DEBUG Processing 644/1111 atomic regions from SNP 193015 to 193615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,708 DEBUG Processing 801/851 atomic regions from SNP 240041 to 240641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,720 DEBUG Processing 603/630 atomic regions from SNP 180778 to 181378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,819 DEBUG Processing 690/996 atomic regions from SNP 206917 to 207517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,873 DEBUG Processing 815/833 atomic regions from SNP 244227 to 244827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,941 DEBUG Processing 802/851 atomic regions from SNP 240341 to 240941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,959 DEBUG Processing 604/630 atomic regions from SNP 181078 to 181678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,965 DEBUG Processing 645/1111 atomic regions from SNP 193315 to 193915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,068 DEBUG Processing 691/996 atomic regions from SNP 207217 to 207817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,100 DEBUG Processing 816/833 atomic regions from SNP 244527 to 245127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,187 DEBUG Processing 803/851 atomic regions from SNP 240641 to 241241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,215 DEBUG Processing 605/630 atomic regions from SNP 181378 to 181978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,248 DEBUG Processing 646/1111 atomic regions from SNP 193615 to 194215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,317 DEBUG Processing 692/996 atomic regions from SNP 207517 to 208117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,325 DEBUG Processing 817/833 atomic regions from SNP 244827 to 245427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,415 DEBUG Processing 804/851 atomic regions from SNP 240941 to 241541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,451 DEBUG Processing 606/630 atomic regions from SNP 181678 to 182278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,520 DEBUG Processing 647/1111 atomic regions from SNP 193915 to 194515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,566 DEBUG Processing 818/833 atomic regions from SNP 245127 to 245727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,570 DEBUG Processing 693/996 atomic regions from SNP 207817 to 208417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,640 DEBUG Processing 805/851 atomic regions from SNP 241241 to 241841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,693 DEBUG Processing 607/630 atomic regions from SNP 181978 to 182578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,790 DEBUG Processing 648/1111 atomic regions from SNP 194215 to 194815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,819 DEBUG Processing 819/833 atomic regions from SNP 245427 to 246027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,820 DEBUG Processing 694/996 atomic regions from SNP 208117 to 208717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,862 DEBUG Processing 806/851 atomic regions from SNP 241541 to 242141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,910 DEBUG Processing 608/630 atomic regions from SNP 182278 to 182878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,058 DEBUG Processing 649/1111 atomic regions from SNP 194515 to 195115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,062 DEBUG Processing 820/833 atomic regions from SNP 245727 to 246327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,073 DEBUG Processing 695/996 atomic regions from SNP 208417 to 209017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,091 DEBUG Processing 807/851 atomic regions from SNP 241841 to 242441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,127 DEBUG Processing 609/630 atomic regions from SNP 182578 to 183178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,299 DEBUG Processing 821/833 atomic regions from SNP 246027 to 246627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,326 DEBUG Processing 808/851 atomic regions from SNP 242141 to 242741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,328 DEBUG Processing 696/996 atomic regions from SNP 208717 to 209317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,332 DEBUG Processing 650/1111 atomic regions from SNP 194815 to 195415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,347 DEBUG Processing 610/630 atomic regions from SNP 182878 to 183478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,552 DEBUG Processing 822/833 atomic regions from SNP 246327 to 246927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,561 DEBUG Processing 809/851 atomic regions from SNP 242441 to 243041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,571 DEBUG Processing 611/630 atomic regions from SNP 183178 to 183778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,583 DEBUG Processing 697/996 atomic regions from SNP 209017 to 209617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,600 DEBUG Processing 651/1111 atomic regions from SNP 195115 to 195715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,793 DEBUG Processing 810/851 atomic regions from SNP 242741 to 243341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,794 DEBUG Processing 823/833 atomic regions from SNP 246627 to 247227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,798 DEBUG Processing 612/630 atomic regions from SNP 183478 to 184078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,834 DEBUG Processing 698/996 atomic regions from SNP 209317 to 209917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,865 DEBUG Processing 652/1111 atomic regions from SNP 195415 to 196015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,018 DEBUG Processing 824/833 atomic regions from SNP 246927 to 247527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,020 DEBUG Processing 811/851 atomic regions from SNP 243041 to 243641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,024 DEBUG Processing 613/630 atomic regions from SNP 183778 to 184378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,077 DEBUG Processing 699/996 atomic regions from SNP 209617 to 210217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,154 DEBUG Processing 653/1111 atomic regions from SNP 195715 to 196315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,243 DEBUG Processing 825/833 atomic regions from SNP 247227 to 247827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,246 DEBUG Processing 812/851 atomic regions from SNP 243341 to 243941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,250 DEBUG Processing 614/630 atomic regions from SNP 184078 to 184678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,324 DEBUG Processing 700/996 atomic regions from SNP 209917 to 210517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,454 DEBUG Processing 654/1111 atomic regions from SNP 196015 to 196615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,468 DEBUG Processing 826/833 atomic regions from SNP 247527 to 248127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,474 DEBUG Processing 615/630 atomic regions from SNP 184378 to 184978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,475 DEBUG Processing 813/851 atomic regions from SNP 243641 to 244241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,566 DEBUG Processing 701/996 atomic regions from SNP 210217 to 210817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,700 DEBUG Processing 827/833 atomic regions from SNP 247827 to 248427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,704 DEBUG Processing 616/630 atomic regions from SNP 184678 to 185278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,709 DEBUG Processing 814/851 atomic regions from SNP 243941 to 244541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,737 DEBUG Processing 655/1111 atomic regions from SNP 196315 to 196915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,808 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:44:10,814 DEBUG Processing 702/996 atomic regions from SNP 210517 to 211117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,930 DEBUG Processing 828/833 atomic regions from SNP 248127 to 248727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,942 DEBUG Processing 815/851 atomic regions from SNP 244241 to 244841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,943 DEBUG Processing 617/630 atomic regions from SNP 184978 to 185578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,001 DEBUG Processing 656/1111 atomic regions from SNP 196615 to 197215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,060 DEBUG Processing 703/996 atomic regions from SNP 210817 to 211417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,156 DEBUG Processing 829/833 atomic regions from SNP 248427 to 249027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,170 DEBUG Processing 816/851 atomic regions from SNP 244541 to 245141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,198 DEBUG Processing 618/630 atomic regions from SNP 185278 to 185878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,264 DEBUG Processing 657/1111 atomic regions from SNP 196915 to 197515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,309 DEBUG Processing 704/996 atomic regions from SNP 211117 to 211717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,380 DEBUG Processing 830/833 atomic regions from SNP 248727 to 249327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,394 DEBUG Processing 817/851 atomic regions from SNP 244841 to 245441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,435 DEBUG Processing 619/630 atomic regions from SNP 185578 to 186178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,528 DEBUG Processing 658/1111 atomic regions from SNP 197215 to 197815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,558 DEBUG Processing 705/996 atomic regions from SNP 211417 to 212017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,605 DEBUG Processing 831/833 atomic regions from SNP 249027 to 249627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,623 DEBUG Processing 818/851 atomic regions from SNP 245141 to 245741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,656 DEBUG Processing 620/630 atomic regions from SNP 185878 to 186478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,791 DEBUG Processing 659/1111 atomic regions from SNP 197515 to 198115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,806 DEBUG Processing 706/996 atomic regions from SNP 211717 to 212317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,832 DEBUG Processing 832/833 atomic regions from SNP 249327 to 249927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,850 DEBUG Processing 819/851 atomic regions from SNP 245441 to 246041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,877 DEBUG Processing 621/630 atomic regions from SNP 186178 to 186778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,054 DEBUG Processing 660/1111 atomic regions from SNP 197815 to 198415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,056 DEBUG Processing 707/996 atomic regions from SNP 212017 to 212617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,078 DEBUG Processing 820/851 atomic regions from SNP 245741 to 246341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,092 DEBUG Processing 833/833 atomic regions from SNP 249627 to 250227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,109 DEBUG Processing 622/630 atomic regions from SNP 186478 to 187078 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,240 DEBUG Unique SNPs positions in subchromosome 1: 250228 2025-01-31 09:44:12,313 DEBUG Processing 821/851 atomic regions from SNP 246041 to 246641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,331 DEBUG Processing 708/996 atomic regions from SNP 212317 to 212917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,344 DEBUG Processing 661/1111 atomic regions from SNP 198115 to 198715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,358 DEBUG Processing 623/630 atomic regions from SNP 186778 to 187378 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,537 DEBUG Processing 822/851 atomic regions from SNP 246341 to 246941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,589 DEBUG Processing 709/996 atomic regions from SNP 212617 to 213217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,604 DEBUG Processing 662/1111 atomic regions from SNP 198415 to 199015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,607 DEBUG Processing 624/630 atomic regions from SNP 187078 to 187678 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,758 DEBUG Processing 823/851 atomic regions from SNP 246641 to 247241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,841 DEBUG Processing 625/630 atomic regions from SNP 187378 to 187978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,847 DEBUG Processing 710/996 atomic regions from SNP 212917 to 213517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,866 DEBUG Processing 663/1111 atomic regions from SNP 198715 to 199315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,985 DEBUG Processing 824/851 atomic regions from SNP 246941 to 247541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,064 DEBUG Processing 626/630 atomic regions from SNP 187678 to 188278 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,101 DEBUG Processing 711/996 atomic regions from SNP 213217 to 213817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,137 DEBUG Processing 664/1111 atomic regions from SNP 199015 to 199615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,211 DEBUG Processing 825/851 atomic regions from SNP 247241 to 247841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,296 DEBUG Processing 627/630 atomic regions from SNP 187978 to 188578 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,353 DEBUG Processing 712/996 atomic regions from SNP 213517 to 214117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,411 DEBUG Processing 665/1111 atomic regions from SNP 199315 to 199915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,442 DEBUG Processing 826/851 atomic regions from SNP 247541 to 248141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,536 DEBUG Processing 628/630 atomic regions from SNP 188278 to 188878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,601 DEBUG Processing 713/996 atomic regions from SNP 213817 to 214417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,676 DEBUG Processing 827/851 atomic regions from SNP 247841 to 248441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,695 DEBUG Processing 666/1111 atomic regions from SNP 199615 to 200215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,793 DEBUG Processing 629/630 atomic regions from SNP 188578 to 189178 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,851 DEBUG Processing 714/996 atomic regions from SNP 214117 to 214717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,906 DEBUG Processing 828/851 atomic regions from SNP 248141 to 248741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,961 DEBUG Processing 667/1111 atomic regions from SNP 199915 to 200515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,039 DEBUG Processing 630/630 atomic regions from SNP 188878 to 189478 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,099 DEBUG Processing 715/996 atomic regions from SNP 214417 to 215017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,131 DEBUG Processing 829/851 atomic regions from SNP 248441 to 249041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,172 DEBUG Unique SNPs positions in subchromosome 2: 189479 2025-01-31 09:44:14,227 DEBUG Processing 668/1111 atomic regions from SNP 200215 to 200815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,357 DEBUG Processing 716/996 atomic regions from SNP 214717 to 215317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,361 DEBUG Processing 830/851 atomic regions from SNP 248741 to 249341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,524 DEBUG Processing 669/1111 atomic regions from SNP 200515 to 201115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,630 DEBUG Processing 831/851 atomic regions from SNP 249041 to 249641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,650 DEBUG Processing 717/996 atomic regions from SNP 215017 to 215617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,830 DEBUG Processing 670/1111 atomic regions from SNP 200815 to 201415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,875 DEBUG Processing 832/851 atomic regions from SNP 249341 to 249941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,906 DEBUG Processing 718/996 atomic regions from SNP 215317 to 215917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,098 DEBUG Processing 671/1111 atomic regions from SNP 201115 to 201715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,111 DEBUG Processing 833/851 atomic regions from SNP 249641 to 250241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,181 DEBUG Processing 719/996 atomic regions from SNP 215617 to 216217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,343 DEBUG Processing 834/851 atomic regions from SNP 249941 to 250541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,360 DEBUG Processing 672/1111 atomic regions from SNP 201415 to 202015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,451 DEBUG Processing 720/996 atomic regions from SNP 215917 to 216517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,572 DEBUG Processing 835/851 atomic regions from SNP 250241 to 250841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,623 DEBUG Processing 673/1111 atomic regions from SNP 201715 to 202315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,713 DEBUG Processing 721/996 atomic regions from SNP 216217 to 216817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,798 DEBUG Processing 836/851 atomic regions from SNP 250541 to 251141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,882 DEBUG Processing 674/1111 atomic regions from SNP 202015 to 202615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,967 DEBUG Processing 722/996 atomic regions from SNP 216517 to 217117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,021 DEBUG Processing 837/851 atomic regions from SNP 250841 to 251441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,145 DEBUG Processing 675/1111 atomic regions from SNP 202315 to 202915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,220 DEBUG Processing 723/996 atomic regions from SNP 216817 to 217417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,245 DEBUG Processing 838/851 atomic regions from SNP 251141 to 251741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,419 DEBUG Processing 676/1111 atomic regions from SNP 202615 to 203215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,497 DEBUG Processing 724/996 atomic regions from SNP 217117 to 217717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,509 DEBUG Processing 839/851 atomic regions from SNP 251441 to 252041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,685 DEBUG Processing 677/1111 atomic regions from SNP 202915 to 203515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,740 DEBUG Processing 840/851 atomic regions from SNP 251741 to 252341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,750 DEBUG Processing 725/996 atomic regions from SNP 217417 to 218017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,966 DEBUG Processing 678/1111 atomic regions from SNP 203215 to 203815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,979 DEBUG Processing 841/851 atomic regions from SNP 252041 to 252641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,008 DEBUG Processing 726/996 atomic regions from SNP 217717 to 218317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,211 DEBUG Processing 842/851 atomic regions from SNP 252341 to 252941 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,230 DEBUG Processing 679/1111 atomic regions from SNP 203515 to 204115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,286 DEBUG Processing 727/996 atomic regions from SNP 218017 to 218617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,441 DEBUG Processing 843/851 atomic regions from SNP 252641 to 253241 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,494 DEBUG Processing 680/1111 atomic regions from SNP 203815 to 204415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,542 DEBUG Processing 728/996 atomic regions from SNP 218317 to 218917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,667 DEBUG Processing 844/851 atomic regions from SNP 252941 to 253541 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,762 DEBUG Processing 681/1111 atomic regions from SNP 204115 to 204715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,799 DEBUG Processing 729/996 atomic regions from SNP 218617 to 219217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,896 DEBUG Processing 845/851 atomic regions from SNP 253241 to 253841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,025 DEBUG Processing 682/1111 atomic regions from SNP 204415 to 205015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,054 DEBUG Processing 730/996 atomic regions from SNP 218917 to 219517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,121 DEBUG Processing 846/851 atomic regions from SNP 253541 to 254141 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,152 DEBUG Subchromosome time: 174.62393495603465, subchromosome SNPs: 189479 2025-01-31 09:44:18,153 DEBUG Estimated BADs: [2.49, 0.83, 2.49, 0.83, 7.47, 4.98, 0.83, 2.49, 0.62, 1.24, 2.49, 0.83, 7.47, 4.98, 7.47, 2.49, 7.47] SNP counts: [22047, 25688, 3139, 8577, 3041, 11218, 6028, 21658, 19903, 26640, 28189, 3894, 7572, 21603, 19279, 7425, 16070] SNP IDs counts: [22047, 25688, 3139, 8577, 3041, 11218, 6028, 21658, 19903, 26640, 28189, 3894, 7572, 21603, 19279, 7425, 16070] Critical gap: 697749bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 16.33Mbp, 32.80Mbp, 34.55Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 48.80Mbp, 52.66Mbp, 66.73Mbp, 79.97Mbp, 96.08Mbp, 111.98Mbp, 115.03Mbp, 119.23Mbp, 131.68Mbp, 141.73Mbp, 147.90Mbp, 156.51Mbp] 2025-01-31 09:44:18,153 DEBUG chr4 time: 174.62448759598192 s 2025-01-31 09:44:18,292 DEBUG Processing 683/1111 atomic regions from SNP 204715 to 205315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,296 DEBUG chr4: Fitting background model for 17 segments 2025-01-31 09:44:18,300 DEBUG Processing 731/996 atomic regions from SNP 219217 to 219817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,356 DEBUG Processing 847/851 atomic regions from SNP 253841 to 254441 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,552 DEBUG Processing 684/1111 atomic regions from SNP 205015 to 205615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,576 DEBUG Processing 732/996 atomic regions from SNP 219517 to 220117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,585 DEBUG Processing 848/851 atomic regions from SNP 254141 to 254741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,820 DEBUG Processing 685/1111 atomic regions from SNP 205315 to 205915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,820 DEBUG Processing 849/851 atomic regions from SNP 254441 to 255041 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,852 DEBUG Processing 733/996 atomic regions from SNP 219817 to 220417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,052 DEBUG Processing 850/851 atomic regions from SNP 254741 to 255341 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,088 DEBUG Processing 686/1111 atomic regions from SNP 205615 to 206215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,101 DEBUG Processing 734/996 atomic regions from SNP 220117 to 220717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,284 DEBUG Processing 851/851 atomic regions from SNP 255041 to 255641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,350 DEBUG Processing 735/996 atomic regions from SNP 220417 to 221017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,355 DEBUG Processing 687/1111 atomic regions from SNP 205915 to 206515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,399 DEBUG Unique SNPs positions in subchromosome 1: 255642 2025-01-31 09:44:19,602 DEBUG Processing 736/996 atomic regions from SNP 220717 to 221317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,617 DEBUG Processing 688/1111 atomic regions from SNP 206215 to 206815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,857 DEBUG Processing 737/996 atomic regions from SNP 221017 to 221617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,883 DEBUG Processing 689/1111 atomic regions from SNP 206515 to 207115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,117 DEBUG Processing 738/996 atomic regions from SNP 221317 to 221917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,155 DEBUG Processing 690/1111 atomic regions from SNP 206815 to 207415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,384 DEBUG Processing 739/996 atomic regions from SNP 221617 to 222217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,424 DEBUG Processing 691/1111 atomic regions from SNP 207115 to 207715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,640 DEBUG Processing 740/996 atomic regions from SNP 221917 to 222517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,692 DEBUG Processing 692/1111 atomic regions from SNP 207415 to 208015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,705 DEBUG Subchromosome time: 230.5542257229099, subchromosome SNPs: 250228 2025-01-31 09:44:20,706 DEBUG Estimated BADs: [0.79, 2.36, 7.07, 2.36, 7.07, 2.36, 1.18, 0.34, 2.36, 0.39, 2.36, 0.34, 1.18, 2.36, 4.71, 9.43, 2.36, 11.79, 2.36, 7.07, 4.71] SNP counts: [25996, 4413, 2718, 9604, 11410, 6255, 25805, 10496, 10832, 2986, 13463, 6292, 14762, 16865, 30197, 9930, 8029, 696, 7463, 11741, 20275] SNP IDs counts: [25996, 4413, 2718, 9604, 11410, 6255, 25805, 10496, 10832, 2986, 13463, 6292, 14762, 16865, 30197, 9930, 8029, 696, 7463, 11741, 20275] Critical gap: 683051bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 20.88Mbp, 23.42Mbp, 24.88Mbp, 30.47Mbp, 36.56Mbp, 40.08Mbp, 55.49Mbp, 62.97Mbp, 69.08Mbp, 71.16Mbp, 78.77Mbp, 83.16Mbp, 92.07Mbp, 103.66Mbp, 120.09Mbp, 125.38Mbp, 129.72Mbp, 130.13Mbp, 134.17Mbp, 140.56Mbp, 151.83Mbp] 2025-01-31 09:44:20,706 DEBUG chr5 time: 230.55486669496167 s 2025-01-31 09:44:20,843 DEBUG chr5: Fitting background model for 21 segments 2025-01-31 09:44:20,895 DEBUG Processing 741/996 atomic regions from SNP 222217 to 222817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,961 DEBUG Processing 693/1111 atomic regions from SNP 207715 to 208315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,144 DEBUG Processing 742/996 atomic regions from SNP 222517 to 223117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,224 DEBUG Processing 694/1111 atomic regions from SNP 208015 to 208615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,397 DEBUG Processing 743/996 atomic regions from SNP 222817 to 223417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,487 DEBUG Processing 695/1111 atomic regions from SNP 208315 to 208915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,654 DEBUG Processing 744/996 atomic regions from SNP 223117 to 223717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,769 DEBUG Processing 696/1111 atomic regions from SNP 208615 to 209215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,909 DEBUG Processing 745/996 atomic regions from SNP 223417 to 224017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,032 DEBUG Processing 697/1111 atomic regions from SNP 208915 to 209515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,158 DEBUG Processing 746/996 atomic regions from SNP 223717 to 224317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,295 DEBUG Processing 698/1111 atomic regions from SNP 209215 to 209815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,409 DEBUG Processing 747/996 atomic regions from SNP 224017 to 224617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,554 DEBUG Processing 699/1111 atomic regions from SNP 209515 to 210115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,656 DEBUG Processing 748/996 atomic regions from SNP 224317 to 224917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,817 DEBUG Processing 700/1111 atomic regions from SNP 209815 to 210415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,906 DEBUG Processing 749/996 atomic regions from SNP 224617 to 225217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,082 DEBUG Processing 701/1111 atomic regions from SNP 210115 to 210715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,160 DEBUG Processing 750/996 atomic regions from SNP 224917 to 225517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,347 DEBUG Processing 702/1111 atomic regions from SNP 210415 to 211015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,415 DEBUG Processing 751/996 atomic regions from SNP 225217 to 225817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,609 DEBUG Processing 703/1111 atomic regions from SNP 210715 to 211315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,671 DEBUG Processing 752/996 atomic regions from SNP 225517 to 226117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,872 DEBUG Processing 704/1111 atomic regions from SNP 211015 to 211615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,926 DEBUG Processing 753/996 atomic regions from SNP 225817 to 226417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,137 DEBUG Processing 705/1111 atomic regions from SNP 211315 to 211915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,183 DEBUG Processing 754/996 atomic regions from SNP 226117 to 226717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,400 DEBUG Processing 706/1111 atomic regions from SNP 211615 to 212215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,443 DEBUG Processing 755/996 atomic regions from SNP 226417 to 227017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,662 DEBUG Processing 707/1111 atomic regions from SNP 211915 to 212515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,702 DEBUG Processing 756/996 atomic regions from SNP 226717 to 227317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,923 DEBUG Processing 708/1111 atomic regions from SNP 212215 to 212815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,960 DEBUG Processing 757/996 atomic regions from SNP 227017 to 227617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,198 DEBUG Processing 709/1111 atomic regions from SNP 212515 to 213115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,235 DEBUG Processing 758/996 atomic regions from SNP 227317 to 227917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,512 DEBUG Processing 710/1111 atomic regions from SNP 212815 to 213415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,537 DEBUG Processing 759/996 atomic regions from SNP 227617 to 228217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,769 DEBUG Subchromosome time: 234.89774228294846, subchromosome SNPs: 255642 2025-01-31 09:44:25,769 DEBUG Estimated BADs: [0.74, 4.45, 1.11, 2.23, 0.74, 11.13, 2.23, 1.11, 4.45, 15.58, 2.23, 17.80, 6.68, 0.74, 4.45, 1.11, 4.45, 1.11, 0.32, 2.23, 0.56] SNP counts: [8832, 2706, 28014, 22661, 11383, 1252, 29991, 23720, 6901, 5086, 6041, 4655, 24379, 6015, 5987, 5179, 28534, 15185, 5676, 7208, 6237] SNP IDs counts: [8832, 2706, 28014, 22661, 11383, 1252, 29991, 23720, 6901, 5086, 6041, 4655, 24379, 6015, 5987, 5179, 28534, 15185, 5676, 7208, 6237] Critical gap: 713086bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.78Mbp, 10.30Mbp, 28.40Mbp, 41.74Mbp, 50.84Mbp, 51.51Mbp, 69.17Mbp, 84.04Mbp, 87.72Mbp, 90.45Mbp, 94.56Mbp, 97.15Mbp, 110.70Mbp, 114.84Mbp, 118.19Mbp, 121.16Mbp, 137.08Mbp, 146.99Mbp, 151.01Mbp, 155.29Mbp, 160.04Mbp] 2025-01-31 09:44:25,769 DEBUG chr3 time: 234.89831823692657 s 2025-01-31 09:44:25,855 DEBUG Processing 760/996 atomic regions from SNP 227917 to 228517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,868 DEBUG Processing 711/1111 atomic regions from SNP 213115 to 213715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,936 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:44:25,937 DEBUG chr6: Signal quantile: 0.995. signal threshold: 14. Best RMSEA: 0.032 2025-01-31 09:44:25,973 DEBUG chr3: Fitting background model for 21 segments 2025-01-31 09:44:26,132 DEBUG Processing 761/996 atomic regions from SNP 228217 to 228817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,167 DEBUG Processing 712/1111 atomic regions from SNP 213415 to 214015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,401 DEBUG Processing 762/996 atomic regions from SNP 228517 to 229117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,466 DEBUG Processing 713/1111 atomic regions from SNP 213715 to 214315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,665 DEBUG Processing 763/996 atomic regions from SNP 228817 to 229417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,763 DEBUG Processing 714/1111 atomic regions from SNP 214015 to 214615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,933 DEBUG Processing 764/996 atomic regions from SNP 229117 to 229717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,029 DEBUG Processing 715/1111 atomic regions from SNP 214315 to 214915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,222 DEBUG Processing 765/996 atomic regions from SNP 229417 to 230017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,293 DEBUG Processing 716/1111 atomic regions from SNP 214615 to 215215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,580 DEBUG Processing 766/996 atomic regions from SNP 229717 to 230317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,614 DEBUG Processing 717/1111 atomic regions from SNP 214915 to 215515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,856 DEBUG Processing 767/996 atomic regions from SNP 230017 to 230617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,888 DEBUG Processing 718/1111 atomic regions from SNP 215215 to 215815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,115 DEBUG Processing 768/996 atomic regions from SNP 230317 to 230917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,160 DEBUG Processing 719/1111 atomic regions from SNP 215515 to 216115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,373 DEBUG Processing 769/996 atomic regions from SNP 230617 to 231217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,447 DEBUG Processing 720/1111 atomic regions from SNP 215815 to 216415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,623 DEBUG Processing 770/996 atomic regions from SNP 230917 to 231517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,724 DEBUG Processing 721/1111 atomic regions from SNP 216115 to 216715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,795 DEBUG chr6 total SNP count: 247970 2025-01-31 09:44:28,796 DEBUG chr6 length: 149736546 2025-01-31 09:44:28,796 DEBUG ----------------------------------------- 2025-01-31 09:44:28,796 INFO Processing SNPs in chr6 2025-01-31 09:44:28,874 DEBUG Processing 771/996 atomic regions from SNP 231217 to 231817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,006 DEBUG Processing 722/1111 atomic regions from SNP 216415 to 217015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,041 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 247970)] 2025-01-31 09:44:29,118 DEBUG Processing 772/996 atomic regions from SNP 231517 to 232117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,208 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:29,274 DEBUG Processing 723/1111 atomic regions from SNP 216715 to 217315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,366 DEBUG Processing 773/996 atomic regions from SNP 231817 to 232417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,537 DEBUG Processing 724/1111 atomic regions from SNP 217015 to 217615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,615 DEBUG Processing 774/996 atomic regions from SNP 232117 to 232717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,793 DEBUG Processing 725/1111 atomic regions from SNP 217315 to 217915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,867 DEBUG Processing 775/996 atomic regions from SNP 232417 to 233017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,051 DEBUG Processing 726/1111 atomic regions from SNP 217615 to 218215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,122 DEBUG Processing 776/996 atomic regions from SNP 232717 to 233317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,317 DEBUG Processing 727/1111 atomic regions from SNP 217915 to 218515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,378 DEBUG Processing 777/996 atomic regions from SNP 233017 to 233617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,605 DEBUG Processing 728/1111 atomic regions from SNP 218215 to 218815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,625 DEBUG Processing 778/996 atomic regions from SNP 233317 to 233917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,873 DEBUG Processing 779/996 atomic regions from SNP 233617 to 234217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,876 DEBUG Processing 729/1111 atomic regions from SNP 218515 to 219115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,121 DEBUG Processing 780/996 atomic regions from SNP 233917 to 234517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,166 DEBUG Processing 730/1111 atomic regions from SNP 218815 to 219415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,366 DEBUG Processing 781/996 atomic regions from SNP 234217 to 234817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,441 DEBUG Processing 731/1111 atomic regions from SNP 219115 to 219715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,614 DEBUG Processing 782/996 atomic regions from SNP 234517 to 235117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,703 DEBUG Processing 732/1111 atomic regions from SNP 219415 to 220015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,863 DEBUG Processing 783/996 atomic regions from SNP 234817 to 235417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,991 DEBUG Processing 733/1111 atomic regions from SNP 219715 to 220315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,116 DEBUG Processing 784/996 atomic regions from SNP 235117 to 235717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,265 DEBUG Processing 734/1111 atomic regions from SNP 220015 to 220615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,367 DEBUG Processing 785/996 atomic regions from SNP 235417 to 236017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,541 DEBUG Processing 735/1111 atomic regions from SNP 220315 to 220915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,614 DEBUG Processing 786/996 atomic regions from SNP 235717 to 236317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,824 DEBUG Processing 736/1111 atomic regions from SNP 220615 to 221215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,860 DEBUG Processing 787/996 atomic regions from SNP 236017 to 236617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,096 DEBUG Processing 737/1111 atomic regions from SNP 220915 to 221515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,104 DEBUG Processing 788/996 atomic regions from SNP 236317 to 236917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,348 DEBUG Processing 789/996 atomic regions from SNP 236617 to 237217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,389 DEBUG Processing 738/1111 atomic regions from SNP 221215 to 221815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,594 DEBUG Processing 790/996 atomic regions from SNP 236917 to 237517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,671 DEBUG Processing 739/1111 atomic regions from SNP 221515 to 222115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,843 DEBUG Processing 791/996 atomic regions from SNP 237217 to 237817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,947 DEBUG Processing 740/1111 atomic regions from SNP 221815 to 222415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,089 DEBUG Processing 792/996 atomic regions from SNP 237517 to 238117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,217 DEBUG Processing 741/1111 atomic regions from SNP 222115 to 222715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,338 DEBUG Processing 793/996 atomic regions from SNP 237817 to 238417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,503 DEBUG Processing 742/1111 atomic regions from SNP 222415 to 223015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,591 DEBUG Processing 794/996 atomic regions from SNP 238117 to 238717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,802 DEBUG Processing 743/1111 atomic regions from SNP 222715 to 223315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,846 DEBUG Processing 795/996 atomic regions from SNP 238417 to 239017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,079 DEBUG Processing 744/1111 atomic regions from SNP 223015 to 223615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,110 DEBUG Processing 796/996 atomic regions from SNP 238717 to 239317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,347 DEBUG Processing 745/1111 atomic regions from SNP 223315 to 223915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,376 DEBUG Processing 797/996 atomic regions from SNP 239017 to 239617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,634 DEBUG Processing 746/1111 atomic regions from SNP 223615 to 224215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,647 DEBUG Processing 798/996 atomic regions from SNP 239317 to 239917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,911 DEBUG Processing 799/996 atomic regions from SNP 239617 to 240217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,935 DEBUG Processing 747/1111 atomic regions from SNP 223915 to 224515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,177 DEBUG Processing 800/996 atomic regions from SNP 239917 to 240517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,230 DEBUG Processing 748/1111 atomic regions from SNP 224215 to 224815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,440 DEBUG Processing 801/996 atomic regions from SNP 240217 to 240817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,535 DEBUG Processing 749/1111 atomic regions from SNP 224515 to 225115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,692 DEBUG Processing 802/996 atomic regions from SNP 240517 to 241117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,841 DEBUG Processing 750/1111 atomic regions from SNP 224815 to 225415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,941 DEBUG Processing 803/996 atomic regions from SNP 240817 to 241417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,146 DEBUG Processing 751/1111 atomic regions from SNP 225115 to 225715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,190 DEBUG Processing 804/996 atomic regions from SNP 241117 to 241717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,438 DEBUG Processing 752/1111 atomic regions from SNP 225415 to 226015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,442 DEBUG Processing 805/996 atomic regions from SNP 241417 to 242017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,694 DEBUG Processing 806/996 atomic regions from SNP 241717 to 242317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,714 DEBUG Processing 753/1111 atomic regions from SNP 225715 to 226315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,948 DEBUG Processing 807/996 atomic regions from SNP 242017 to 242617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,996 DEBUG Processing 754/1111 atomic regions from SNP 226015 to 226615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,218 DEBUG Processing 808/996 atomic regions from SNP 242317 to 242917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,287 DEBUG Processing 755/1111 atomic regions from SNP 226315 to 226915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,483 DEBUG Processing 809/996 atomic regions from SNP 242617 to 243217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,596 DEBUG Processing 756/1111 atomic regions from SNP 226615 to 227215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,746 DEBUG Processing 810/996 atomic regions from SNP 242917 to 243517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,875 DEBUG Processing 757/1111 atomic regions from SNP 226915 to 227515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,014 DEBUG Processing 811/996 atomic regions from SNP 243217 to 243817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,140 DEBUG Processing 758/1111 atomic regions from SNP 227215 to 227815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,275 DEBUG Processing 812/996 atomic regions from SNP 243517 to 244117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,423 DEBUG Processing 759/1111 atomic regions from SNP 227515 to 228115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,535 DEBUG Processing 813/996 atomic regions from SNP 243817 to 244417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,728 DEBUG Processing 760/1111 atomic regions from SNP 227815 to 228415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,788 DEBUG Processing 814/996 atomic regions from SNP 244117 to 244717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,019 DEBUG Processing 761/1111 atomic regions from SNP 228115 to 228715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,037 DEBUG Processing 815/996 atomic regions from SNP 244417 to 245017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,288 DEBUG Processing 816/996 atomic regions from SNP 244717 to 245317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,308 DEBUG Processing 762/1111 atomic regions from SNP 228415 to 229015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,541 DEBUG Processing 817/996 atomic regions from SNP 245017 to 245617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,586 DEBUG Processing 763/1111 atomic regions from SNP 228715 to 229315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,798 DEBUG Processing 818/996 atomic regions from SNP 245317 to 245917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,877 DEBUG Processing 764/1111 atomic regions from SNP 229015 to 229615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,059 DEBUG Processing 819/996 atomic regions from SNP 245617 to 246217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,164 DEBUG Processing 765/1111 atomic regions from SNP 229315 to 229915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,318 DEBUG Processing 820/996 atomic regions from SNP 245917 to 246517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,450 DEBUG Processing 766/1111 atomic regions from SNP 229615 to 230215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,578 DEBUG Processing 821/996 atomic regions from SNP 246217 to 246817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,730 DEBUG Processing 767/1111 atomic regions from SNP 229915 to 230515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,837 DEBUG Processing 822/996 atomic regions from SNP 246517 to 247117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,007 DEBUG Processing 768/1111 atomic regions from SNP 230215 to 230815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,103 DEBUG Processing 823/996 atomic regions from SNP 246817 to 247417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,288 DEBUG Processing 769/1111 atomic regions from SNP 230515 to 231115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,370 DEBUG Processing 824/996 atomic regions from SNP 247117 to 247717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,564 DEBUG Processing 770/1111 atomic regions from SNP 230815 to 231415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,638 DEBUG Processing 825/996 atomic regions from SNP 247417 to 248017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,841 DEBUG Processing 771/1111 atomic regions from SNP 231115 to 231715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,909 DEBUG Processing 826/996 atomic regions from SNP 247717 to 248317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,121 DEBUG Processing 772/1111 atomic regions from SNP 231415 to 232015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,181 DEBUG Processing 827/996 atomic regions from SNP 248017 to 248617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,405 DEBUG Processing 773/1111 atomic regions from SNP 231715 to 232315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,451 DEBUG Processing 828/996 atomic regions from SNP 248317 to 248917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,686 DEBUG Processing 774/1111 atomic regions from SNP 232015 to 232615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,712 DEBUG Processing 829/996 atomic regions from SNP 248617 to 249217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,971 DEBUG Processing 775/1111 atomic regions from SNP 232315 to 232915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,977 DEBUG Processing 830/996 atomic regions from SNP 248917 to 249517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,237 DEBUG Processing 831/996 atomic regions from SNP 249217 to 249817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,259 DEBUG Processing 776/1111 atomic regions from SNP 232615 to 233215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,498 DEBUG Processing 832/996 atomic regions from SNP 249517 to 250117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,546 DEBUG Processing 777/1111 atomic regions from SNP 232915 to 233515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,758 DEBUG Processing 833/996 atomic regions from SNP 249817 to 250417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,833 DEBUG Processing 778/1111 atomic regions from SNP 233215 to 233815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,018 DEBUG Processing 834/996 atomic regions from SNP 250117 to 250717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,117 DEBUG Processing 779/1111 atomic regions from SNP 233515 to 234115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,275 DEBUG Processing 835/996 atomic regions from SNP 250417 to 251017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,403 DEBUG Processing 780/1111 atomic regions from SNP 233815 to 234415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,532 DEBUG Processing 836/996 atomic regions from SNP 250717 to 251317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,685 DEBUG Processing 781/1111 atomic regions from SNP 234115 to 234715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,788 DEBUG Processing 837/996 atomic regions from SNP 251017 to 251617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,969 DEBUG Processing 782/1111 atomic regions from SNP 234415 to 235015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,047 DEBUG Processing 838/996 atomic regions from SNP 251317 to 251917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,250 DEBUG Processing 783/1111 atomic regions from SNP 234715 to 235315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,306 DEBUG Processing 839/996 atomic regions from SNP 251617 to 252217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,528 DEBUG Processing 784/1111 atomic regions from SNP 235015 to 235615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,567 DEBUG Processing 840/996 atomic regions from SNP 251917 to 252517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,807 DEBUG Processing 785/1111 atomic regions from SNP 235315 to 235915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,833 DEBUG Processing 841/996 atomic regions from SNP 252217 to 252817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,086 DEBUG Processing 786/1111 atomic regions from SNP 235615 to 236215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,099 DEBUG Processing 842/996 atomic regions from SNP 252517 to 253117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,358 DEBUG Processing 843/996 atomic regions from SNP 252817 to 253417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,362 DEBUG Processing 787/1111 atomic regions from SNP 235915 to 236515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,615 DEBUG Processing 844/996 atomic regions from SNP 253117 to 253717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,636 DEBUG Processing 788/1111 atomic regions from SNP 236215 to 236815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,874 DEBUG Processing 845/996 atomic regions from SNP 253417 to 254017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,907 DEBUG Processing 789/1111 atomic regions from SNP 236515 to 237115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,130 DEBUG Processing 846/996 atomic regions from SNP 253717 to 254317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,184 DEBUG Processing 790/1111 atomic regions from SNP 236815 to 237415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,383 DEBUG Processing 847/996 atomic regions from SNP 254017 to 254617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,465 DEBUG Processing 791/1111 atomic regions from SNP 237115 to 237715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,639 DEBUG Processing 848/996 atomic regions from SNP 254317 to 254917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,754 DEBUG Processing 792/1111 atomic regions from SNP 237415 to 238015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,907 DEBUG Processing 849/996 atomic regions from SNP 254617 to 255217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,038 DEBUG Processing 793/1111 atomic regions from SNP 237715 to 238315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,161 DEBUG Processing 850/996 atomic regions from SNP 254917 to 255517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,314 DEBUG Processing 794/1111 atomic regions from SNP 238015 to 238615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,418 DEBUG Processing 851/996 atomic regions from SNP 255217 to 255817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,595 DEBUG Processing 795/1111 atomic regions from SNP 238315 to 238915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,673 DEBUG Processing 852/996 atomic regions from SNP 255517 to 256117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,877 DEBUG Processing 796/1111 atomic regions from SNP 238615 to 239215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,931 DEBUG Processing 853/996 atomic regions from SNP 255817 to 256417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,159 DEBUG Processing 797/1111 atomic regions from SNP 238915 to 239515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,192 DEBUG Processing 854/996 atomic regions from SNP 256117 to 256717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,446 DEBUG Processing 798/1111 atomic regions from SNP 239215 to 239815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,455 DEBUG Processing 855/996 atomic regions from SNP 256417 to 257017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,732 DEBUG Processing 799/1111 atomic regions from SNP 239515 to 240115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,747 DEBUG Processing 856/996 atomic regions from SNP 256717 to 257317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,022 DEBUG Processing 800/1111 atomic regions from SNP 239815 to 240415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,023 DEBUG Processing 857/996 atomic regions from SNP 257017 to 257617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,290 DEBUG Processing 858/996 atomic regions from SNP 257317 to 257917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,303 DEBUG Processing 801/1111 atomic regions from SNP 240115 to 240715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,564 DEBUG Processing 859/996 atomic regions from SNP 257617 to 258217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,582 DEBUG Processing 802/1111 atomic regions from SNP 240415 to 241015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,818 DEBUG Processing 860/996 atomic regions from SNP 257917 to 258517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,856 DEBUG Processing 803/1111 atomic regions from SNP 240715 to 241315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,071 DEBUG Processing 861/996 atomic regions from SNP 258217 to 258817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,156 DEBUG Processing 804/1111 atomic regions from SNP 241015 to 241615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,338 DEBUG Processing 862/996 atomic regions from SNP 258517 to 259117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,436 DEBUG Processing 805/1111 atomic regions from SNP 241315 to 241915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,612 DEBUG Processing 863/996 atomic regions from SNP 258817 to 259417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,717 DEBUG Processing 806/1111 atomic regions from SNP 241615 to 242215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,882 DEBUG Processing 864/996 atomic regions from SNP 259117 to 259717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,999 DEBUG Processing 807/1111 atomic regions from SNP 241915 to 242515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,129 DEBUG Processing 865/996 atomic regions from SNP 259417 to 260017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,275 DEBUG Processing 808/1111 atomic regions from SNP 242215 to 242815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,373 DEBUG Processing 866/996 atomic regions from SNP 259717 to 260317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,548 DEBUG Processing 809/1111 atomic regions from SNP 242515 to 243115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,625 DEBUG Processing 867/996 atomic regions from SNP 260017 to 260617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,822 DEBUG Processing 810/1111 atomic regions from SNP 242815 to 243415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,879 DEBUG Processing 868/996 atomic regions from SNP 260317 to 260917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,098 DEBUG Processing 811/1111 atomic regions from SNP 243115 to 243715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,136 DEBUG Processing 869/996 atomic regions from SNP 260617 to 261217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,237 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:44:54,372 DEBUG Processing 812/1111 atomic regions from SNP 243415 to 244015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,410 DEBUG Processing 870/996 atomic regions from SNP 260917 to 261517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,657 DEBUG Processing 813/1111 atomic regions from SNP 243715 to 244315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,681 DEBUG Processing 871/996 atomic regions from SNP 261217 to 261817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,938 DEBUG Processing 814/1111 atomic regions from SNP 244015 to 244615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,945 DEBUG Processing 872/996 atomic regions from SNP 261517 to 262117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,207 DEBUG Processing 873/996 atomic regions from SNP 261817 to 262417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,213 DEBUG Processing 815/1111 atomic regions from SNP 244315 to 244915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,467 DEBUG Processing 874/996 atomic regions from SNP 262117 to 262717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,485 DEBUG Processing 816/1111 atomic regions from SNP 244615 to 245215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,732 DEBUG Processing 875/996 atomic regions from SNP 262417 to 263017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,762 DEBUG Processing 817/1111 atomic regions from SNP 244915 to 245515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,012 DEBUG Processing 876/996 atomic regions from SNP 262717 to 263317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,042 DEBUG Processing 818/1111 atomic regions from SNP 245215 to 245815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,286 DEBUG Processing 877/996 atomic regions from SNP 263017 to 263617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,324 DEBUG Processing 819/1111 atomic regions from SNP 245515 to 246115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,545 DEBUG Processing 878/996 atomic regions from SNP 263317 to 263917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,598 DEBUG Processing 820/1111 atomic regions from SNP 245815 to 246415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,807 DEBUG Processing 879/996 atomic regions from SNP 263617 to 264217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,869 DEBUG Processing 821/1111 atomic regions from SNP 246115 to 246715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,080 DEBUG Processing 880/996 atomic regions from SNP 263917 to 264517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,138 DEBUG Processing 822/1111 atomic regions from SNP 246415 to 247015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,336 DEBUG Processing 881/996 atomic regions from SNP 264217 to 264817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,413 DEBUG Processing 823/1111 atomic regions from SNP 246715 to 247315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,592 DEBUG Processing 882/996 atomic regions from SNP 264517 to 265117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,692 DEBUG Processing 824/1111 atomic regions from SNP 247015 to 247615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,857 DEBUG Processing 883/996 atomic regions from SNP 264817 to 265417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,969 DEBUG Processing 825/1111 atomic regions from SNP 247315 to 247915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,136 DEBUG Processing 884/996 atomic regions from SNP 265117 to 265717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,241 DEBUG Processing 826/1111 atomic regions from SNP 247615 to 248215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,407 DEBUG Processing 885/996 atomic regions from SNP 265417 to 266017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,512 DEBUG Processing 827/1111 atomic regions from SNP 247915 to 248515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,664 DEBUG Segmenting atomic regions: 2025-01-31 09:44:58,675 DEBUG Processing 886/996 atomic regions from SNP 265717 to 266317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,773 DEBUG Processing 1/825 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,794 DEBUG Processing 828/1111 atomic regions from SNP 248215 to 248815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,934 DEBUG Processing 887/996 atomic regions from SNP 266017 to 266617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,005 DEBUG Processing 2/825 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,068 DEBUG Processing 829/1111 atomic regions from SNP 248515 to 249115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,218 DEBUG Processing 888/996 atomic regions from SNP 266317 to 266917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,244 DEBUG Processing 3/825 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,349 DEBUG Processing 830/1111 atomic regions from SNP 248815 to 249415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,474 DEBUG Processing 4/825 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,490 DEBUG Processing 889/996 atomic regions from SNP 266617 to 267217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,629 DEBUG Processing 831/1111 atomic regions from SNP 249115 to 249715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,698 DEBUG Processing 5/825 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,764 DEBUG Processing 890/996 atomic regions from SNP 266917 to 267517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,925 DEBUG Processing 832/1111 atomic regions from SNP 249415 to 250015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,942 DEBUG Processing 6/825 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,080 DEBUG Processing 891/996 atomic regions from SNP 267217 to 267817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,223 DEBUG Processing 7/825 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,264 DEBUG Processing 833/1111 atomic regions from SNP 249715 to 250315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,404 DEBUG Processing 892/996 atomic regions from SNP 267517 to 268117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,523 DEBUG Processing 8/825 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,593 DEBUG Processing 834/1111 atomic regions from SNP 250015 to 250615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,676 DEBUG Processing 893/996 atomic regions from SNP 267817 to 268417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,757 DEBUG Processing 9/825 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,877 DEBUG Processing 835/1111 atomic regions from SNP 250315 to 250915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,937 DEBUG Processing 894/996 atomic regions from SNP 268117 to 268717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,985 DEBUG Processing 10/825 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,145 DEBUG Processing 836/1111 atomic regions from SNP 250615 to 251215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,210 DEBUG Processing 895/996 atomic regions from SNP 268417 to 269017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,212 DEBUG Processing 11/825 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,414 DEBUG Processing 837/1111 atomic regions from SNP 250915 to 251515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,443 DEBUG Processing 12/825 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,482 DEBUG Processing 896/996 atomic regions from SNP 268717 to 269317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,681 DEBUG Processing 838/1111 atomic regions from SNP 251215 to 251815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,685 DEBUG Processing 13/825 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,750 DEBUG Processing 897/996 atomic regions from SNP 269017 to 269617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,929 DEBUG Processing 14/825 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,955 DEBUG Processing 839/1111 atomic regions from SNP 251515 to 252115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,023 DEBUG Processing 898/996 atomic regions from SNP 269317 to 269917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,195 DEBUG Processing 15/825 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,272 DEBUG Processing 840/1111 atomic regions from SNP 251815 to 252415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,329 DEBUG Processing 899/996 atomic regions from SNP 269617 to 270217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,423 DEBUG Processing 16/825 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,489 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:45:02,545 DEBUG Processing 841/1111 atomic regions from SNP 252115 to 252715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,605 DEBUG Processing 900/996 atomic regions from SNP 269917 to 270517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,658 DEBUG Processing 17/825 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,817 DEBUG Processing 842/1111 atomic regions from SNP 252415 to 253015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,865 DEBUG Processing 901/996 atomic regions from SNP 270217 to 270817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,892 DEBUG Processing 18/825 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,087 DEBUG Processing 843/1111 atomic regions from SNP 252715 to 253315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,114 DEBUG Processing 902/996 atomic regions from SNP 270517 to 271117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,119 DEBUG Processing 19/825 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,340 DEBUG Processing 20/825 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,357 DEBUG Processing 844/1111 atomic regions from SNP 253015 to 253615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,364 DEBUG Processing 903/996 atomic regions from SNP 270817 to 271417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,559 DEBUG Processing 21/825 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,615 DEBUG Processing 904/996 atomic regions from SNP 271117 to 271717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,628 DEBUG Processing 845/1111 atomic regions from SNP 253315 to 253915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,785 DEBUG Processing 22/825 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,868 DEBUG Processing 905/996 atomic regions from SNP 271417 to 272017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,889 DEBUG Processing 846/1111 atomic regions from SNP 253615 to 254215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,010 DEBUG Processing 23/825 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,121 DEBUG Processing 906/996 atomic regions from SNP 271717 to 272317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,176 DEBUG Processing 847/1111 atomic regions from SNP 253915 to 254515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,238 DEBUG Processing 24/825 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,377 DEBUG Processing 907/996 atomic regions from SNP 272017 to 272617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,461 DEBUG Processing 848/1111 atomic regions from SNP 254215 to 254815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,464 DEBUG Processing 25/825 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,655 DEBUG Processing 908/996 atomic regions from SNP 272317 to 272917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,696 DEBUG Processing 26/825 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,733 DEBUG Processing 849/1111 atomic regions from SNP 254515 to 255115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,906 DEBUG Processing 909/996 atomic regions from SNP 272617 to 273217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,929 DEBUG Processing 27/825 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,006 DEBUG Processing 850/1111 atomic regions from SNP 254815 to 255415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,157 DEBUG Processing 28/825 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,161 DEBUG Processing 910/996 atomic regions from SNP 272917 to 273517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,276 DEBUG Processing 851/1111 atomic regions from SNP 255115 to 255715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,384 DEBUG Processing 29/825 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,420 DEBUG Processing 911/996 atomic regions from SNP 273217 to 273817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,549 DEBUG Processing 852/1111 atomic regions from SNP 255415 to 256015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,620 DEBUG Processing 30/825 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,687 DEBUG Processing 912/996 atomic regions from SNP 273517 to 274117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,819 DEBUG Processing 853/1111 atomic regions from SNP 255715 to 256315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,864 DEBUG Processing 31/825 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,953 DEBUG Processing 913/996 atomic regions from SNP 273817 to 274417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,108 DEBUG Processing 854/1111 atomic regions from SNP 256015 to 256615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,119 DEBUG Processing 32/825 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,228 DEBUG Processing 914/996 atomic regions from SNP 274117 to 274717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,348 DEBUG Processing 33/825 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,382 DEBUG Processing 855/1111 atomic regions from SNP 256315 to 256915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,482 DEBUG Processing 915/996 atomic regions from SNP 274417 to 275017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,571 DEBUG Processing 34/825 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,650 DEBUG Processing 856/1111 atomic regions from SNP 256615 to 257215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,734 DEBUG Processing 916/996 atomic regions from SNP 274717 to 275317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,793 DEBUG Processing 35/825 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,916 DEBUG Processing 857/1111 atomic regions from SNP 256915 to 257515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,988 DEBUG Processing 917/996 atomic regions from SNP 275017 to 275617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,020 DEBUG Processing 36/825 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,189 DEBUG Processing 858/1111 atomic regions from SNP 257215 to 257815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,245 DEBUG Processing 918/996 atomic regions from SNP 275317 to 275917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,249 DEBUG Processing 37/825 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,458 DEBUG Processing 859/1111 atomic regions from SNP 257515 to 258115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,475 DEBUG Processing 38/825 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,499 DEBUG Processing 919/996 atomic regions from SNP 275617 to 276217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,715 DEBUG Processing 39/825 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,753 DEBUG Processing 860/1111 atomic regions from SNP 257815 to 258415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,762 DEBUG Processing 920/996 atomic regions from SNP 275917 to 276517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,978 DEBUG Processing 40/825 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,044 DEBUG Processing 921/996 atomic regions from SNP 276217 to 276817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,064 DEBUG Processing 861/1111 atomic regions from SNP 258115 to 258715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,200 DEBUG Processing 41/825 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,317 DEBUG Processing 922/996 atomic regions from SNP 276517 to 277117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,337 DEBUG Processing 862/1111 atomic regions from SNP 258415 to 259015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,429 DEBUG Processing 42/825 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,568 DEBUG Processing 923/996 atomic regions from SNP 276817 to 277417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,600 DEBUG Processing 863/1111 atomic regions from SNP 258715 to 259315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,659 DEBUG Processing 43/825 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,824 DEBUG Processing 924/996 atomic regions from SNP 277117 to 277717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,875 DEBUG Processing 864/1111 atomic regions from SNP 259015 to 259615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,897 DEBUG Processing 44/825 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,099 DEBUG Processing 925/996 atomic regions from SNP 277417 to 278017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,121 DEBUG Processing 45/825 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,141 DEBUG Processing 865/1111 atomic regions from SNP 259315 to 259915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,342 DEBUG Processing 46/825 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,374 DEBUG Processing 926/996 atomic regions from SNP 277717 to 278317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,407 DEBUG Processing 866/1111 atomic regions from SNP 259615 to 260215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,562 DEBUG Processing 47/825 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,639 DEBUG Processing 927/996 atomic regions from SNP 278017 to 278617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,685 DEBUG Processing 867/1111 atomic regions from SNP 259915 to 260515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,725 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:45:09,788 DEBUG Processing 48/825 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,896 DEBUG Processing 928/996 atomic regions from SNP 278317 to 278917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,986 DEBUG Processing 868/1111 atomic regions from SNP 260215 to 260815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,020 DEBUG Processing 49/825 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,163 DEBUG Processing 929/996 atomic regions from SNP 278617 to 279217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,258 DEBUG Processing 50/825 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,278 DEBUG Processing 869/1111 atomic regions from SNP 260515 to 261115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,419 DEBUG Processing 930/996 atomic regions from SNP 278917 to 279517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,517 DEBUG Processing 51/825 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,574 DEBUG Processing 870/1111 atomic regions from SNP 260815 to 261415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,711 DEBUG Processing 931/996 atomic regions from SNP 279217 to 279817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,772 DEBUG Processing 52/825 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,896 DEBUG Processing 871/1111 atomic regions from SNP 261115 to 261715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,052 DEBUG Processing 932/996 atomic regions from SNP 279517 to 280117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,057 DEBUG Processing 53/825 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,237 DEBUG Processing 872/1111 atomic regions from SNP 261415 to 262015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,368 DEBUG Processing 54/825 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,409 DEBUG Processing 933/996 atomic regions from SNP 279817 to 280417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,511 DEBUG Processing 873/1111 atomic regions from SNP 261715 to 262315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,644 DEBUG Processing 55/825 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,736 DEBUG Processing 934/996 atomic regions from SNP 280117 to 280717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,763 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:45:11,764 DEBUG chr7: Signal quantile: 0.993. signal threshold: 17. Best RMSEA: 0.025 2025-01-31 09:45:11,857 DEBUG Processing 874/1111 atomic regions from SNP 262015 to 262615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,879 DEBUG Processing 56/825 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,006 DEBUG Processing 935/996 atomic regions from SNP 280417 to 281017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,116 DEBUG Processing 57/825 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,142 DEBUG Processing 875/1111 atomic regions from SNP 262315 to 262915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,267 DEBUG Processing 936/996 atomic regions from SNP 280717 to 281317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,346 DEBUG Processing 58/825 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,403 DEBUG Processing 876/1111 atomic regions from SNP 262615 to 263215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,534 DEBUG Processing 937/996 atomic regions from SNP 281017 to 281617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,583 DEBUG Processing 59/825 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,672 DEBUG Processing 877/1111 atomic regions from SNP 262915 to 263515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,796 DEBUG Processing 938/996 atomic regions from SNP 281317 to 281917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,825 DEBUG Processing 60/825 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,964 DEBUG Processing 878/1111 atomic regions from SNP 263215 to 263815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,111 DEBUG Processing 939/996 atomic regions from SNP 281617 to 282217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,115 DEBUG Processing 61/825 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,304 DEBUG Processing 879/1111 atomic regions from SNP 263515 to 264115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,438 DEBUG Processing 62/825 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,476 DEBUG Processing 940/996 atomic regions from SNP 281917 to 282517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,661 DEBUG Processing 880/1111 atomic regions from SNP 263815 to 264415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,663 DEBUG Processing 63/825 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,765 DEBUG Processing 941/996 atomic regions from SNP 282217 to 282817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,929 DEBUG Processing 64/825 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,975 DEBUG Processing 881/1111 atomic regions from SNP 264115 to 264715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,055 DEBUG Processing 942/996 atomic regions from SNP 282517 to 283117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,221 DEBUG Processing 65/825 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,288 DEBUG Processing 882/1111 atomic regions from SNP 264415 to 265015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,323 DEBUG Processing 943/996 atomic regions from SNP 282817 to 283417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,459 DEBUG Processing 66/825 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,596 DEBUG Processing 883/1111 atomic regions from SNP 264715 to 265315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,601 DEBUG Processing 944/996 atomic regions from SNP 283117 to 283717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,677 DEBUG Processing 67/825 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,815 DEBUG chr7 total SNP count: 227455 2025-01-31 09:45:14,815 DEBUG chr7 length: 145441459 2025-01-31 09:45:14,815 DEBUG ----------------------------------------- 2025-01-31 09:45:14,815 INFO Processing SNPs in chr7 2025-01-31 09:45:14,871 DEBUG Processing 884/1111 atomic regions from SNP 265015 to 265615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,876 DEBUG Processing 945/996 atomic regions from SNP 283417 to 284017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,910 DEBUG Processing 68/825 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,133 DEBUG Processing 69/825 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,137 DEBUG Processing 946/996 atomic regions from SNP 283717 to 284317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,146 DEBUG Processing 885/1111 atomic regions from SNP 265315 to 265915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,167 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20225), (20225, 20251), (20251, 227455)] 2025-01-31 09:45:15,269 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:15,423 DEBUG Processing 70/825 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,466 DEBUG Processing 947/996 atomic regions from SNP 284017 to 284617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,474 DEBUG Processing 886/1111 atomic regions from SNP 265615 to 266215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,723 DEBUG Processing 71/825 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,826 DEBUG Processing 948/996 atomic regions from SNP 284317 to 284917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,836 DEBUG Processing 887/1111 atomic regions from SNP 265915 to 266515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,031 DEBUG Processing 72/825 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,173 DEBUG Processing 949/996 atomic regions from SNP 284617 to 285217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,185 DEBUG Processing 888/1111 atomic regions from SNP 266215 to 266815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,251 DEBUG Processing 73/825 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,598 DEBUG Processing 74/825 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,608 DEBUG Processing 889/1111 atomic regions from SNP 266515 to 267115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,617 DEBUG Processing 950/996 atomic regions from SNP 284917 to 285517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,690 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:45:16,729 DEBUG chr10: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.030 2025-01-31 09:45:16,838 DEBUG Processing 75/825 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,891 DEBUG Processing 890/1111 atomic regions from SNP 266815 to 267415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,915 DEBUG Processing 951/996 atomic regions from SNP 285217 to 285817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,080 DEBUG Processing 76/825 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,174 DEBUG Processing 891/1111 atomic regions from SNP 267115 to 267715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,208 DEBUG Processing 952/996 atomic regions from SNP 285517 to 286117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,315 DEBUG Processing 77/825 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,451 DEBUG Processing 892/1111 atomic regions from SNP 267415 to 268015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,489 DEBUG Processing 953/996 atomic regions from SNP 285817 to 286417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,544 DEBUG Processing 78/825 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,647 DEBUG Segmenting atomic regions: 2025-01-31 09:45:17,724 DEBUG Processing 893/1111 atomic regions from SNP 267715 to 268315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,749 DEBUG Processing 1/66 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:17,772 DEBUG Processing 954/996 atomic regions from SNP 286117 to 286717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,774 DEBUG Processing 79/825 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,964 DEBUG Processing 2/66 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:17,996 DEBUG Processing 894/1111 atomic regions from SNP 268015 to 268615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,008 DEBUG Processing 80/825 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,054 DEBUG Processing 955/996 atomic regions from SNP 286417 to 287017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,178 DEBUG Processing 3/66 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:18,234 DEBUG Processing 81/825 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,271 DEBUG Processing 895/1111 atomic regions from SNP 268315 to 268915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,315 DEBUG Processing 956/996 atomic regions from SNP 286717 to 287317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,415 DEBUG Processing 4/66 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:18,460 DEBUG Processing 82/825 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,537 DEBUG Processing 896/1111 atomic regions from SNP 268615 to 269215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,570 DEBUG Processing 957/996 atomic regions from SNP 287017 to 287617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,639 DEBUG Processing 5/66 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:18,683 DEBUG Processing 83/825 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,805 DEBUG Processing 897/1111 atomic regions from SNP 268915 to 269515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,826 DEBUG Processing 958/996 atomic regions from SNP 287317 to 287917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,860 DEBUG Processing 6/66 atomic regions from SNP 1510 to 2112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:18,912 DEBUG Processing 84/825 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,992 DEBUG chr10 total SNP count: 217991 2025-01-31 09:45:18,992 DEBUG chr10 length: 130694993 2025-01-31 09:45:18,992 DEBUG ----------------------------------------- 2025-01-31 09:45:18,993 INFO Processing SNPs in chr10 2025-01-31 09:45:19,070 DEBUG Processing 898/1111 atomic regions from SNP 269215 to 269815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,083 DEBUG Processing 959/996 atomic regions from SNP 287617 to 288217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,087 DEBUG Processing 7/66 atomic regions from SNP 1812 to 2414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:19,145 DEBUG Processing 85/825 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,214 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217991)] 2025-01-31 09:45:19,323 DEBUG Processing 8/66 atomic regions from SNP 2114 to 2716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:19,334 DEBUG Processing 960/996 atomic regions from SNP 287917 to 288517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,338 DEBUG Processing 899/1111 atomic regions from SNP 269515 to 270115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,368 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:19,375 DEBUG Processing 86/825 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,562 DEBUG Processing 9/66 atomic regions from SNP 2416 to 3018 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:19,584 DEBUG Processing 961/996 atomic regions from SNP 288217 to 288817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,599 DEBUG Processing 87/825 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,601 DEBUG Processing 900/1111 atomic regions from SNP 269815 to 270415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,799 DEBUG Processing 10/66 atomic regions from SNP 2718 to 3320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:19,822 DEBUG Processing 88/825 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,838 DEBUG Processing 962/996 atomic regions from SNP 288517 to 289117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,866 DEBUG Processing 901/1111 atomic regions from SNP 270115 to 270715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,045 DEBUG Processing 89/825 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,046 DEBUG Processing 11/66 atomic regions from SNP 3020 to 3622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:20,094 DEBUG Processing 963/996 atomic regions from SNP 288817 to 289417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,137 DEBUG Processing 902/1111 atomic regions from SNP 270415 to 271015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,268 DEBUG Processing 12/66 atomic regions from SNP 3322 to 3924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:20,274 DEBUG Processing 90/825 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,349 DEBUG Processing 964/996 atomic regions from SNP 289117 to 289717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,400 DEBUG Processing 903/1111 atomic regions from SNP 270715 to 271315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,487 DEBUG Processing 13/66 atomic regions from SNP 3624 to 4226 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:20,505 DEBUG Processing 91/825 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,606 DEBUG Processing 965/996 atomic regions from SNP 289417 to 290017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,667 DEBUG Processing 904/1111 atomic regions from SNP 271015 to 271615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,704 DEBUG Processing 14/66 atomic regions from SNP 3926 to 4528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:20,735 DEBUG Processing 92/825 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,861 DEBUG Processing 966/996 atomic regions from SNP 289717 to 290317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,918 DEBUG Processing 15/66 atomic regions from SNP 4228 to 4830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:20,954 DEBUG Processing 905/1111 atomic regions from SNP 271315 to 271915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,961 DEBUG Processing 93/825 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,123 DEBUG Processing 967/996 atomic regions from SNP 290017 to 290617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,143 DEBUG Processing 16/66 atomic regions from SNP 4530 to 5132 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:21,189 DEBUG Processing 94/825 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,241 DEBUG Processing 906/1111 atomic regions from SNP 271615 to 272215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,386 DEBUG Processing 17/66 atomic regions from SNP 4832 to 5434 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:21,406 DEBUG Processing 968/996 atomic regions from SNP 290317 to 290917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,418 DEBUG Processing 95/825 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,506 DEBUG Processing 907/1111 atomic regions from SNP 271915 to 272515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,622 DEBUG Processing 18/66 atomic regions from SNP 5134 to 5736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:21,656 DEBUG Processing 96/825 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,674 DEBUG Processing 969/996 atomic regions from SNP 290617 to 291217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,770 DEBUG Processing 908/1111 atomic regions from SNP 272215 to 272815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,838 DEBUG Processing 19/66 atomic regions from SNP 5436 to 6038 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:21,886 DEBUG Processing 97/825 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,934 DEBUG Processing 970/996 atomic regions from SNP 290917 to 291517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,036 DEBUG Processing 909/1111 atomic regions from SNP 272515 to 273115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,056 DEBUG Processing 20/66 atomic regions from SNP 5738 to 6340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:22,115 DEBUG Processing 98/825 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,193 DEBUG Processing 971/996 atomic regions from SNP 291217 to 291817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,270 DEBUG Processing 21/66 atomic regions from SNP 6040 to 6642 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:22,309 DEBUG Processing 910/1111 atomic regions from SNP 272815 to 273415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,339 DEBUG Processing 99/825 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,449 DEBUG Processing 972/996 atomic regions from SNP 291517 to 292117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,489 DEBUG Processing 22/66 atomic regions from SNP 6342 to 6944 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:22,565 DEBUG Processing 100/825 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,579 DEBUG Processing 911/1111 atomic regions from SNP 273115 to 273715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,702 DEBUG Processing 973/996 atomic regions from SNP 291817 to 292417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,709 DEBUG Processing 23/66 atomic regions from SNP 6644 to 7246 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:22,797 DEBUG Processing 101/825 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,850 DEBUG Processing 912/1111 atomic regions from SNP 273415 to 274015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,920 DEBUG Processing 24/66 atomic regions from SNP 6946 to 7548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:22,955 DEBUG Processing 974/996 atomic regions from SNP 292117 to 292717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,029 DEBUG Processing 102/825 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,119 DEBUG Processing 913/1111 atomic regions from SNP 273715 to 274315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,128 DEBUG Processing 25/66 atomic regions from SNP 7248 to 7850 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:23,207 DEBUG Processing 975/996 atomic regions from SNP 292417 to 293017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,260 DEBUG Processing 103/825 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,343 DEBUG Processing 26/66 atomic regions from SNP 7550 to 8152 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:23,415 DEBUG Processing 914/1111 atomic regions from SNP 274015 to 274615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,465 DEBUG Processing 976/996 atomic regions from SNP 292717 to 293317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,500 DEBUG Processing 104/825 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,561 DEBUG Processing 27/66 atomic regions from SNP 7852 to 8454 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:23,693 DEBUG Processing 915/1111 atomic regions from SNP 274315 to 274915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,728 DEBUG Processing 977/996 atomic regions from SNP 293017 to 293617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,738 DEBUG Processing 105/825 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,789 DEBUG Processing 28/66 atomic regions from SNP 8154 to 8756 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:23,969 DEBUG Processing 916/1111 atomic regions from SNP 274615 to 275215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,986 DEBUG Processing 106/825 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,001 DEBUG Processing 978/996 atomic regions from SNP 293317 to 293917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,026 DEBUG Processing 29/66 atomic regions from SNP 8456 to 9058 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:24,231 DEBUG Processing 107/825 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,249 DEBUG Processing 917/1111 atomic regions from SNP 274915 to 275515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,259 DEBUG Processing 30/66 atomic regions from SNP 8758 to 9360 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:24,298 DEBUG Processing 979/996 atomic regions from SNP 293617 to 294217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,476 DEBUG Processing 108/825 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,488 DEBUG Processing 31/66 atomic regions from SNP 9060 to 9662 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:24,547 DEBUG Processing 918/1111 atomic regions from SNP 275215 to 275815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,592 DEBUG Processing 980/996 atomic regions from SNP 293917 to 294517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,735 DEBUG Processing 32/66 atomic regions from SNP 9362 to 9964 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:24,744 DEBUG Processing 109/825 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,804 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:45:24,806 DEBUG chr8: Signal quantile: 0.995. signal threshold: 17. Best RMSEA: 0.034 2025-01-31 09:45:24,855 DEBUG Processing 919/1111 atomic regions from SNP 275515 to 276115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,908 DEBUG Processing 981/996 atomic regions from SNP 294217 to 294817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,976 DEBUG Processing 33/66 atomic regions from SNP 9664 to 10266 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:24,996 DEBUG Processing 110/825 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,127 DEBUG Processing 920/1111 atomic regions from SNP 275815 to 276415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,175 DEBUG Processing 982/996 atomic regions from SNP 294517 to 295117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,206 DEBUG Processing 34/66 atomic regions from SNP 9966 to 10568 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:25,238 DEBUG Processing 111/825 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,400 DEBUG Processing 921/1111 atomic regions from SNP 276115 to 276715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,436 DEBUG Processing 983/996 atomic regions from SNP 294817 to 295417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,454 DEBUG Processing 35/66 atomic regions from SNP 10268 to 10870 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:25,477 DEBUG Processing 112/825 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,665 DEBUG Processing 922/1111 atomic regions from SNP 276415 to 277015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,690 DEBUG Processing 36/66 atomic regions from SNP 10570 to 11172 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:25,693 DEBUG Processing 984/996 atomic regions from SNP 295117 to 295717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,706 DEBUG Processing 113/825 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,909 DEBUG Processing 37/66 atomic regions from SNP 10872 to 11474 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:25,940 DEBUG Processing 923/1111 atomic regions from SNP 276715 to 277315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,944 DEBUG Processing 114/825 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,979 DEBUG Processing 985/996 atomic regions from SNP 295417 to 296017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,160 DEBUG Processing 38/66 atomic regions from SNP 11174 to 11776 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:26,210 DEBUG Processing 115/825 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,249 DEBUG Processing 924/1111 atomic regions from SNP 277015 to 277615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,269 DEBUG Processing 986/996 atomic regions from SNP 295717 to 296317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,376 DEBUG Processing 39/66 atomic regions from SNP 11476 to 12078 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:26,441 DEBUG Processing 116/825 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,531 DEBUG Processing 925/1111 atomic regions from SNP 277315 to 277915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,534 DEBUG Processing 987/996 atomic regions from SNP 296017 to 296617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,590 DEBUG Processing 40/66 atomic regions from SNP 11778 to 12380 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:26,670 DEBUG Processing 117/825 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,789 DEBUG Processing 988/996 atomic regions from SNP 296317 to 296917 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,796 DEBUG Processing 926/1111 atomic regions from SNP 277615 to 278215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,801 DEBUG Processing 41/66 atomic regions from SNP 12080 to 12682 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:26,895 DEBUG Processing 118/825 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,016 DEBUG Processing 42/66 atomic regions from SNP 12382 to 12984 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:27,047 DEBUG Processing 989/996 atomic regions from SNP 296617 to 297217 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,059 DEBUG Processing 927/1111 atomic regions from SNP 277915 to 278515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,098 DEBUG chr8 total SNP count: 213476 2025-01-31 09:45:27,098 DEBUG chr8 length: 129401213 2025-01-31 09:45:27,098 DEBUG ----------------------------------------- 2025-01-31 09:45:27,098 INFO Processing SNPs in chr8 2025-01-31 09:45:27,121 DEBUG Processing 119/825 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,233 DEBUG Processing 43/66 atomic regions from SNP 12684 to 13286 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:27,306 DEBUG Processing 990/996 atomic regions from SNP 296917 to 297517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,311 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 213476)] 2025-01-31 09:45:27,322 DEBUG Processing 928/1111 atomic regions from SNP 278215 to 278815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,345 DEBUG Processing 120/825 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,446 DEBUG Processing 44/66 atomic regions from SNP 12986 to 13588 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:27,460 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:27,567 DEBUG Processing 991/996 atomic regions from SNP 297217 to 297817 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,574 DEBUG Processing 121/825 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,594 DEBUG Processing 929/1111 atomic regions from SNP 278515 to 279115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,657 DEBUG Processing 45/66 atomic regions from SNP 13288 to 13890 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:27,806 DEBUG Processing 122/825 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,825 DEBUG Processing 992/996 atomic regions from SNP 297517 to 298117 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,877 DEBUG Processing 930/1111 atomic regions from SNP 278815 to 279415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,896 DEBUG Processing 46/66 atomic regions from SNP 13590 to 14192 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:28,032 DEBUG Processing 123/825 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,111 DEBUG Processing 993/996 atomic regions from SNP 297817 to 298417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,137 DEBUG Processing 47/66 atomic regions from SNP 13892 to 14494 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:28,171 DEBUG Processing 931/1111 atomic regions from SNP 279115 to 279715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,252 DEBUG Processing 124/825 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,382 DEBUG Processing 48/66 atomic regions from SNP 14194 to 14796 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:28,406 DEBUG Processing 994/996 atomic regions from SNP 298117 to 298717 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,471 DEBUG Processing 932/1111 atomic regions from SNP 279415 to 280015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,478 DEBUG Processing 125/825 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,635 DEBUG Processing 49/66 atomic regions from SNP 14496 to 15098 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:28,671 DEBUG Processing 995/996 atomic regions from SNP 298417 to 299017 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,702 DEBUG Processing 126/825 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,764 DEBUG Processing 933/1111 atomic regions from SNP 279715 to 280315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,866 DEBUG Processing 50/66 atomic regions from SNP 14798 to 15400 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:28,938 DEBUG Processing 127/825 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,941 DEBUG Processing 996/996 atomic regions from SNP 298717 to 299317 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,059 DEBUG Processing 934/1111 atomic regions from SNP 280015 to 280615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,077 DEBUG Processing 51/66 atomic regions from SNP 15100 to 15702 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:29,079 DEBUG Unique SNPs positions in subchromosome 1: 299318 2025-01-31 09:45:29,174 DEBUG Processing 128/825 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,306 DEBUG Processing 52/66 atomic regions from SNP 15402 to 16004 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:29,351 DEBUG Processing 935/1111 atomic regions from SNP 280315 to 280915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,403 DEBUG Processing 129/825 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,533 DEBUG Processing 53/66 atomic regions from SNP 15704 to 16306 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:29,613 DEBUG Processing 936/1111 atomic regions from SNP 280615 to 281215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,632 DEBUG Processing 130/825 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,744 DEBUG Processing 54/66 atomic regions from SNP 16006 to 16608 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:29,858 DEBUG Processing 131/825 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,874 DEBUG Processing 937/1111 atomic regions from SNP 280915 to 281515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,956 DEBUG Processing 55/66 atomic regions from SNP 16308 to 16910 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:30,082 DEBUG Processing 132/825 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,137 DEBUG Processing 938/1111 atomic regions from SNP 281215 to 281815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,168 DEBUG Processing 56/66 atomic regions from SNP 16610 to 17212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:30,305 DEBUG Processing 133/825 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,384 DEBUG Processing 57/66 atomic regions from SNP 16912 to 17514 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:30,399 DEBUG Processing 939/1111 atomic regions from SNP 281515 to 282115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,525 DEBUG Processing 134/825 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,601 DEBUG Processing 58/66 atomic regions from SNP 17214 to 17816 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:30,663 DEBUG Processing 940/1111 atomic regions from SNP 281815 to 282415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,742 DEBUG Processing 135/825 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,810 DEBUG Processing 59/66 atomic regions from SNP 17516 to 18117 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:30,924 DEBUG Processing 941/1111 atomic regions from SNP 282115 to 282715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,967 DEBUG Processing 136/825 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,018 DEBUG Processing 60/66 atomic regions from SNP 17817 to 18418 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:31,201 DEBUG Processing 137/825 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,206 DEBUG Processing 942/1111 atomic regions from SNP 282415 to 283015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,254 DEBUG Processing 61/66 atomic regions from SNP 18118 to 18719 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:31,446 DEBUG Processing 138/825 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,494 DEBUG Processing 943/1111 atomic regions from SNP 282715 to 283315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,506 DEBUG Processing 62/66 atomic regions from SNP 18419 to 19020 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:31,673 DEBUG Processing 139/825 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,755 DEBUG Processing 944/1111 atomic regions from SNP 283015 to 283615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,758 DEBUG Processing 63/66 atomic regions from SNP 18720 to 19321 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:31,892 DEBUG Processing 140/825 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,005 DEBUG Processing 64/66 atomic regions from SNP 19021 to 19622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:32,017 DEBUG Processing 945/1111 atomic regions from SNP 283315 to 283915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,120 DEBUG Processing 141/825 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,253 DEBUG Processing 65/66 atomic regions from SNP 19322 to 19923 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:32,282 DEBUG Processing 946/1111 atomic regions from SNP 283615 to 284215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,355 DEBUG Processing 142/825 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,495 DEBUG Processing 66/66 atomic regions from SNP 19623 to 20224 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:32,543 DEBUG Processing 947/1111 atomic regions from SNP 283915 to 284515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,607 DEBUG Processing 143/825 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,607 DEBUG Unique SNPs positions in subchromosome 1: 20225 2025-01-31 09:45:32,660 DEBUG Subchromosome time: 17.390849153976887, subchromosome SNPs: 20225 2025-01-31 09:45:32,711 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:32,803 DEBUG Processing 948/1111 atomic regions from SNP 284215 to 284815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,850 DEBUG Processing 144/825 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,064 DEBUG Processing 949/1111 atomic regions from SNP 284515 to 285115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,088 DEBUG Processing 145/825 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,327 DEBUG Processing 146/825 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,330 DEBUG Processing 950/1111 atomic regions from SNP 284815 to 285415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,558 DEBUG Processing 147/825 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,596 DEBUG Processing 951/1111 atomic regions from SNP 285115 to 285715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,787 DEBUG Processing 148/825 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,863 DEBUG Processing 952/1111 atomic regions from SNP 285415 to 286015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,032 DEBUG Processing 149/825 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,128 DEBUG Processing 953/1111 atomic regions from SNP 285715 to 286315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,277 DEBUG Processing 150/825 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,387 DEBUG Processing 954/1111 atomic regions from SNP 286015 to 286615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,498 DEBUG Processing 151/825 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,645 DEBUG Processing 955/1111 atomic regions from SNP 286315 to 286915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,722 DEBUG Processing 152/825 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,909 DEBUG Processing 956/1111 atomic regions from SNP 286615 to 287215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,948 DEBUG Processing 153/825 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,172 DEBUG Processing 957/1111 atomic regions from SNP 286915 to 287515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,183 DEBUG Processing 154/825 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,429 DEBUG Processing 155/825 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,438 DEBUG Processing 958/1111 atomic regions from SNP 287215 to 287815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,665 DEBUG Processing 156/825 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,702 DEBUG Processing 959/1111 atomic regions from SNP 287515 to 288115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,888 DEBUG Processing 157/825 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,967 DEBUG Processing 960/1111 atomic regions from SNP 287815 to 288415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,113 DEBUG Processing 158/825 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,238 DEBUG Processing 961/1111 atomic regions from SNP 288115 to 288715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,334 DEBUG Processing 159/825 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,507 DEBUG Processing 962/1111 atomic regions from SNP 288415 to 289015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,562 DEBUG Processing 160/825 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,774 DEBUG Processing 963/1111 atomic regions from SNP 288715 to 289315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,800 DEBUG Processing 161/825 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,036 DEBUG Processing 162/825 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,065 DEBUG Processing 964/1111 atomic regions from SNP 289015 to 289615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,259 DEBUG Processing 163/825 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,363 DEBUG Processing 965/1111 atomic regions from SNP 289315 to 289915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,476 DEBUG Processing 164/825 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,671 DEBUG Processing 966/1111 atomic regions from SNP 289615 to 290215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,695 DEBUG Processing 165/825 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,923 DEBUG Processing 166/825 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,975 DEBUG Processing 967/1111 atomic regions from SNP 289915 to 290515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,156 DEBUG Processing 167/825 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,263 DEBUG Processing 968/1111 atomic regions from SNP 290215 to 290815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,386 DEBUG Processing 168/825 atomic regions from SNP 50267 to 50868 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,528 DEBUG Processing 969/1111 atomic regions from SNP 290515 to 291115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,615 DEBUG Processing 169/825 atomic regions from SNP 50568 to 51169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,788 DEBUG Processing 970/1111 atomic regions from SNP 290815 to 291415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,842 DEBUG Processing 170/825 atomic regions from SNP 50869 to 51469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,065 DEBUG Processing 971/1111 atomic regions from SNP 291115 to 291715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,065 DEBUG Processing 171/825 atomic regions from SNP 51169 to 51769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,292 DEBUG Processing 172/825 atomic regions from SNP 51469 to 52069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,341 DEBUG Processing 972/1111 atomic regions from SNP 291415 to 292015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,525 DEBUG Processing 173/825 atomic regions from SNP 51769 to 52369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,631 DEBUG Processing 973/1111 atomic regions from SNP 291715 to 292315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,755 DEBUG Processing 174/825 atomic regions from SNP 52069 to 52669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,900 DEBUG Processing 974/1111 atomic regions from SNP 292015 to 292615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,978 DEBUG Processing 175/825 atomic regions from SNP 52369 to 52969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,160 DEBUG Subchromosome time: 304.77120819094125, subchromosome SNPs: 299318 2025-01-31 09:45:40,163 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:40,167 DEBUG Processing 975/1111 atomic regions from SNP 292315 to 292915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,197 DEBUG Processing 176/825 atomic regions from SNP 52669 to 53269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,418 DEBUG Processing 177/825 atomic regions from SNP 52969 to 53569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,429 DEBUG Processing 976/1111 atomic regions from SNP 292615 to 293215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,660 DEBUG Processing 178/825 atomic regions from SNP 53269 to 53869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,692 DEBUG Processing 977/1111 atomic regions from SNP 292915 to 293515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,882 DEBUG Processing 179/825 atomic regions from SNP 53569 to 54169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,952 DEBUG Processing 978/1111 atomic regions from SNP 293215 to 293815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,103 DEBUG Segmenting atomic regions: 2025-01-31 09:45:41,107 DEBUG Processing 180/825 atomic regions from SNP 53869 to 54469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,217 DEBUG Processing 979/1111 atomic regions from SNP 293515 to 294115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,239 DEBUG Processing 1/25 atomic regions from SNP 0 to 603 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:41,325 DEBUG Processing 181/825 atomic regions from SNP 54169 to 54769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,486 DEBUG Processing 980/1111 atomic regions from SNP 293815 to 294415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,490 DEBUG Processing 2/25 atomic regions from SNP 303 to 906 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:41,550 DEBUG Processing 182/825 atomic regions from SNP 54469 to 55069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,744 DEBUG Processing 3/25 atomic regions from SNP 606 to 1208 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:41,761 DEBUG Processing 981/1111 atomic regions from SNP 294115 to 294715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,775 DEBUG Processing 183/825 atomic regions from SNP 54769 to 55369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,998 DEBUG Processing 4/25 atomic regions from SNP 908 to 1510 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:42,002 DEBUG Processing 184/825 atomic regions from SNP 55069 to 55669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,030 DEBUG Processing 982/1111 atomic regions from SNP 294415 to 295015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,226 DEBUG Processing 185/825 atomic regions from SNP 55369 to 55969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,248 DEBUG Processing 5/25 atomic regions from SNP 1210 to 1812 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:42,297 DEBUG Processing 983/1111 atomic regions from SNP 294715 to 295315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,446 DEBUG Processing 186/825 atomic regions from SNP 55669 to 56269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,495 DEBUG Processing 6/25 atomic regions from SNP 1512 to 2114 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:42,563 DEBUG Processing 984/1111 atomic regions from SNP 295015 to 295615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,667 DEBUG Processing 187/825 atomic regions from SNP 55969 to 56569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,741 DEBUG Processing 7/25 atomic regions from SNP 1814 to 2416 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:42,827 DEBUG Processing 985/1111 atomic regions from SNP 295315 to 295915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,898 DEBUG Processing 188/825 atomic regions from SNP 56269 to 56869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,981 DEBUG Processing 8/25 atomic regions from SNP 2116 to 2718 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:43,089 DEBUG Processing 986/1111 atomic regions from SNP 295615 to 296215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,131 DEBUG Processing 189/825 atomic regions from SNP 56569 to 57169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,222 DEBUG Processing 9/25 atomic regions from SNP 2418 to 3020 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:43,355 DEBUG Processing 987/1111 atomic regions from SNP 295915 to 296515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,366 DEBUG Processing 190/825 atomic regions from SNP 56869 to 57469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,463 DEBUG Processing 10/25 atomic regions from SNP 2720 to 3322 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:43,594 DEBUG Processing 191/825 atomic regions from SNP 57169 to 57769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,624 DEBUG Processing 988/1111 atomic regions from SNP 296215 to 296815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,711 DEBUG Processing 11/25 atomic regions from SNP 3022 to 3624 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:43,815 DEBUG Processing 192/825 atomic regions from SNP 57469 to 58069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,890 DEBUG Processing 989/1111 atomic regions from SNP 296515 to 297115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,963 DEBUG Processing 12/25 atomic regions from SNP 3324 to 3926 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:44,032 DEBUG Processing 193/825 atomic regions from SNP 57769 to 58369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,159 DEBUG Processing 990/1111 atomic regions from SNP 296815 to 297415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,227 DEBUG Processing 13/25 atomic regions from SNP 3626 to 4228 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:44,257 DEBUG Processing 194/825 atomic regions from SNP 58069 to 58669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,423 DEBUG Processing 991/1111 atomic regions from SNP 297115 to 297715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,489 DEBUG Processing 195/825 atomic regions from SNP 58369 to 58969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,510 DEBUG Processing 14/25 atomic regions from SNP 3928 to 4530 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:44,722 DEBUG Processing 992/1111 atomic regions from SNP 297415 to 298015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,724 DEBUG Processing 196/825 atomic regions from SNP 58669 to 59269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,806 DEBUG Processing 15/25 atomic regions from SNP 4230 to 4832 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:44,952 DEBUG Processing 197/825 atomic regions from SNP 58969 to 59569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,995 DEBUG Processing 993/1111 atomic regions from SNP 297715 to 298315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,096 DEBUG Processing 16/25 atomic regions from SNP 4532 to 5134 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:45,199 DEBUG Processing 198/825 atomic regions from SNP 59269 to 59869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,262 DEBUG Processing 994/1111 atomic regions from SNP 298015 to 298615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,365 DEBUG Processing 17/25 atomic regions from SNP 4834 to 5436 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:45,443 DEBUG Processing 199/825 atomic regions from SNP 59569 to 60169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,534 DEBUG Processing 995/1111 atomic regions from SNP 298315 to 298915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,636 DEBUG Processing 18/25 atomic regions from SNP 5136 to 5738 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:45,671 DEBUG Processing 200/825 atomic regions from SNP 59869 to 60469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,810 DEBUG Processing 996/1111 atomic regions from SNP 298615 to 299215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,909 DEBUG Processing 19/25 atomic regions from SNP 5438 to 6040 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:45,912 DEBUG Processing 201/825 atomic regions from SNP 60169 to 60769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,915 DEBUG Segmenting atomic regions: 2025-01-31 09:45:46,013 DEBUG Processing 1/725 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,085 DEBUG Processing 997/1111 atomic regions from SNP 298915 to 299515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,155 DEBUG Processing 202/825 atomic regions from SNP 60469 to 61069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,173 DEBUG Processing 20/25 atomic regions from SNP 5740 to 6342 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:46,226 DEBUG Processing 2/725 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,358 DEBUG Processing 998/1111 atomic regions from SNP 299215 to 299815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,383 DEBUG Processing 203/825 atomic regions from SNP 60769 to 61369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,432 DEBUG Processing 3/725 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,443 DEBUG Processing 21/25 atomic regions from SNP 6042 to 6644 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:46,617 DEBUG Processing 204/825 atomic regions from SNP 61069 to 61669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,626 DEBUG Processing 999/1111 atomic regions from SNP 299515 to 300115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,643 DEBUG Processing 4/725 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,719 DEBUG Processing 22/25 atomic regions from SNP 6344 to 6946 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:46,859 DEBUG Processing 5/725 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,860 DEBUG Processing 205/825 atomic regions from SNP 61369 to 61969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,897 DEBUG Processing 1000/1111 atomic regions from SNP 299815 to 300415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,991 DEBUG Processing 23/25 atomic regions from SNP 6646 to 7248 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:47,065 DEBUG Processing 6/725 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,085 DEBUG Processing 206/825 atomic regions from SNP 61669 to 62269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,168 DEBUG Processing 1001/1111 atomic regions from SNP 300115 to 300715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,269 DEBUG Processing 7/725 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,275 DEBUG Processing 24/25 atomic regions from SNP 6948 to 7550 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:47,308 DEBUG Processing 207/825 atomic regions from SNP 61969 to 62569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,447 DEBUG Processing 1002/1111 atomic regions from SNP 300415 to 301015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,482 DEBUG Processing 8/725 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,526 DEBUG Processing 208/825 atomic regions from SNP 62269 to 62869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,553 DEBUG Processing 25/25 atomic regions from SNP 7250 to 7852 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:47,689 DEBUG Unique SNPs positions in subchromosome 2: 7853 2025-01-31 09:45:47,700 DEBUG Subchromosome time: 7.536540583940223, subchromosome SNPs: 7853 2025-01-31 09:45:47,700 DEBUG Estimated BADs: [2.36, 1.18, 2.36, 7.09, 2.36, 0.39, 1.18, 2.36, 23.63, 2.36, 1.18, 4.73, 0.34, 4.73, 0.30, 1.18, 4.73, 2.36, 4.73, 2.36, 7.09, 2.36, 7.09, 2.36, 2.36, 9.45] SNP counts: [10031, 15906, 11687, 21568, 5915, 7202, 42897, 11058, 130, 9809, 5391, 2406, 4492, 10516, 7201, 30609, 6739, 8738, 7384, 37025, 9713, 10787, 9010, 13104, 3722, 4131] SNP IDs counts: [10031, 15906, 11687, 21568, 5915, 7202, 42897, 11058, 130, 9809, 5391, 2406, 4492, 10516, 7201, 30609, 6739, 8738, 7384, 37025, 9713, 10787, 9010, 13104, 3722, 4131] Critical gap: 735661bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.72Mbp, 18.03Mbp, 24.92Mbp, 36.25Mbp, 39.70Mbp, 44.24Mbp, 69.79Mbp, 75.66Mbp, 75.73Mbp, 81.16Mbp, 84.65Mbp, 86.10Mbp, 89.35Mbp, 95.42Mbp, 101.04Mbp, 118.66Mbp, 122.23Mbp, 127.20Mbp, 131.12Mbp, 152.33Mbp, 157.50Mbp, 163.32Mbp, 168.08Mbp, 175.18Mbp[1.52Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:45:47,700 DEBUG chr2 time: 7.537088720011525 s 2025-01-31 09:45:47,707 DEBUG Processing 9/725 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,732 DEBUG Processing 1003/1111 atomic regions from SNP 300715 to 301315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,748 DEBUG Processing 209/825 atomic regions from SNP 62569 to 63169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,876 DEBUG chr2: Fitting background model for 26 segments 2025-01-31 09:45:47,938 DEBUG Processing 10/725 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,972 DEBUG Processing 210/825 atomic regions from SNP 62869 to 63469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,017 DEBUG Processing 1004/1111 atomic regions from SNP 301015 to 301615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,166 DEBUG Processing 11/725 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,203 DEBUG Processing 211/825 atomic regions from SNP 63169 to 63769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,297 DEBUG Processing 1005/1111 atomic regions from SNP 301315 to 301915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,383 DEBUG Processing 12/725 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,433 DEBUG Processing 212/825 atomic regions from SNP 63469 to 64069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,570 DEBUG Processing 1006/1111 atomic regions from SNP 301615 to 302215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,594 DEBUG Processing 13/725 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,660 DEBUG Processing 213/825 atomic regions from SNP 63769 to 64369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,811 DEBUG Processing 14/725 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,864 DEBUG Processing 1007/1111 atomic regions from SNP 301915 to 302515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,892 DEBUG Processing 214/825 atomic regions from SNP 64069 to 64669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,027 DEBUG Processing 15/725 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,126 DEBUG Processing 215/825 atomic regions from SNP 64369 to 64969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,176 DEBUG Processing 1008/1111 atomic regions from SNP 302215 to 302815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,240 DEBUG Processing 16/725 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,356 DEBUG Processing 216/825 atomic regions from SNP 64669 to 65269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,455 DEBUG Processing 1009/1111 atomic regions from SNP 302515 to 303115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,473 DEBUG Processing 17/725 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,590 DEBUG Processing 217/825 atomic regions from SNP 64969 to 65569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,686 DEBUG Processing 18/725 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,730 DEBUG Processing 1010/1111 atomic regions from SNP 302815 to 303415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,817 DEBUG Processing 218/825 atomic regions from SNP 65269 to 65869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,900 DEBUG Processing 19/725 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,000 DEBUG Processing 1011/1111 atomic regions from SNP 303115 to 303715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,037 DEBUG Processing 219/825 atomic regions from SNP 65569 to 66169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,118 DEBUG Processing 20/725 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,263 DEBUG Processing 220/825 atomic regions from SNP 65869 to 66469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,267 DEBUG Processing 1012/1111 atomic regions from SNP 303415 to 304015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,330 DEBUG Processing 21/725 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,492 DEBUG Processing 221/825 atomic regions from SNP 66169 to 66769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,531 DEBUG Processing 1013/1111 atomic regions from SNP 303715 to 304315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,539 DEBUG Processing 22/725 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,726 DEBUG Processing 222/825 atomic regions from SNP 66469 to 67069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,748 DEBUG Processing 23/725 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,798 DEBUG Processing 1014/1111 atomic regions from SNP 304015 to 304615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,950 DEBUG Processing 223/825 atomic regions from SNP 66769 to 67369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,958 DEBUG Processing 24/725 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,086 DEBUG Processing 1015/1111 atomic regions from SNP 304315 to 304915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,165 DEBUG Processing 25/725 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,174 DEBUG Processing 224/825 atomic regions from SNP 67069 to 67669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,380 DEBUG Processing 26/725 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,390 DEBUG Processing 1016/1111 atomic regions from SNP 304615 to 305215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,399 DEBUG Processing 225/825 atomic regions from SNP 67369 to 67969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,603 DEBUG Processing 27/725 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,625 DEBUG Processing 226/825 atomic regions from SNP 67669 to 68269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,692 DEBUG Processing 1017/1111 atomic regions from SNP 304915 to 305515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,817 DEBUG Processing 28/725 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,856 DEBUG Processing 227/825 atomic regions from SNP 67969 to 68569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,965 DEBUG Processing 1018/1111 atomic regions from SNP 305215 to 305815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,026 DEBUG Processing 29/725 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,084 DEBUG Processing 228/825 atomic regions from SNP 68269 to 68869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,239 DEBUG Processing 1019/1111 atomic regions from SNP 305515 to 306115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,241 DEBUG Processing 30/725 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,309 DEBUG Processing 229/825 atomic regions from SNP 68569 to 69169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,457 DEBUG Processing 31/725 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,537 DEBUG Processing 1020/1111 atomic regions from SNP 305815 to 306415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,541 DEBUG Processing 230/825 atomic regions from SNP 68869 to 69469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,680 DEBUG Processing 32/725 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,786 DEBUG Processing 231/825 atomic regions from SNP 69169 to 69769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,835 DEBUG Processing 1021/1111 atomic regions from SNP 306115 to 306715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,887 DEBUG Processing 33/725 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,026 DEBUG Processing 232/825 atomic regions from SNP 69469 to 70069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,094 DEBUG Processing 34/725 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,121 DEBUG Processing 1022/1111 atomic regions from SNP 306415 to 307015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,269 DEBUG Processing 233/825 atomic regions from SNP 69769 to 70369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,310 DEBUG Processing 35/725 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,353 DEBUG Segmenting atomic regions: 2025-01-31 09:45:53,420 DEBUG Processing 1023/1111 atomic regions from SNP 306715 to 307315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,449 DEBUG Processing 1/710 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,509 DEBUG Processing 234/825 atomic regions from SNP 70069 to 70669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,528 DEBUG Processing 36/725 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,649 DEBUG Processing 2/710 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,719 DEBUG Processing 1024/1111 atomic regions from SNP 307015 to 307615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,741 DEBUG Processing 37/725 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,745 DEBUG Processing 235/825 atomic regions from SNP 70369 to 70969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,864 DEBUG Processing 3/710 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,947 DEBUG Processing 38/725 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,973 DEBUG Processing 236/825 atomic regions from SNP 70669 to 71269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,012 DEBUG Processing 1025/1111 atomic regions from SNP 307315 to 307915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,089 DEBUG Processing 4/710 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,149 DEBUG Processing 39/725 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,192 DEBUG Processing 237/825 atomic regions from SNP 70969 to 71569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,306 DEBUG Processing 5/710 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,309 DEBUG Processing 1026/1111 atomic regions from SNP 307615 to 308215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,363 DEBUG Processing 40/725 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,416 DEBUG Processing 238/825 atomic regions from SNP 71269 to 71869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,516 DEBUG Processing 6/710 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,582 DEBUG Processing 41/725 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,605 DEBUG Processing 1027/1111 atomic regions from SNP 307915 to 308515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,653 DEBUG Processing 239/825 atomic regions from SNP 71569 to 72169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,738 DEBUG Processing 7/710 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,796 DEBUG Processing 42/725 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,874 DEBUG Processing 1028/1111 atomic regions from SNP 308215 to 308815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,886 DEBUG Processing 240/825 atomic regions from SNP 71869 to 72469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,966 DEBUG Processing 8/710 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,006 DEBUG Processing 43/725 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,111 DEBUG Processing 241/825 atomic regions from SNP 72169 to 72769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,140 DEBUG Processing 1029/1111 atomic regions from SNP 308515 to 309115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,175 DEBUG Processing 9/710 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,218 DEBUG Processing 44/725 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,334 DEBUG Processing 242/825 atomic regions from SNP 72469 to 73069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,382 DEBUG Processing 10/710 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,405 DEBUG Processing 1030/1111 atomic regions from SNP 308815 to 309415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,430 DEBUG Processing 45/725 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,561 DEBUG Processing 243/825 atomic regions from SNP 72769 to 73369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,593 DEBUG Processing 11/710 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,644 DEBUG Processing 46/725 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,677 DEBUG Processing 1031/1111 atomic regions from SNP 309115 to 309715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,798 DEBUG Processing 244/825 atomic regions from SNP 73069 to 73669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,805 DEBUG Processing 12/710 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,863 DEBUG Processing 47/725 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,947 DEBUG Processing 1032/1111 atomic regions from SNP 309415 to 310015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,007 DEBUG Processing 13/710 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,030 DEBUG Processing 245/825 atomic regions from SNP 73369 to 73969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,080 DEBUG Processing 48/725 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,211 DEBUG Processing 14/710 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,219 DEBUG Processing 1033/1111 atomic regions from SNP 309715 to 310315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,261 DEBUG Processing 246/825 atomic regions from SNP 73669 to 74269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,286 DEBUG Processing 49/725 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,421 DEBUG Processing 15/710 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,486 DEBUG Processing 247/825 atomic regions from SNP 73969 to 74569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,490 DEBUG Processing 1034/1111 atomic regions from SNP 310015 to 310615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,491 DEBUG Processing 50/725 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,636 DEBUG Processing 16/710 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,707 DEBUG Processing 51/725 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,721 DEBUG Processing 248/825 atomic regions from SNP 74269 to 74869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,760 DEBUG Processing 1035/1111 atomic regions from SNP 310315 to 310915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,847 DEBUG Processing 17/710 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,921 DEBUG Processing 52/725 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,980 DEBUG Processing 249/825 atomic regions from SNP 74569 to 75169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,026 DEBUG Processing 1036/1111 atomic regions from SNP 310615 to 311215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,053 DEBUG Processing 18/710 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,132 DEBUG Processing 53/725 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,243 DEBUG Processing 250/825 atomic regions from SNP 74869 to 75469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,263 DEBUG Processing 19/710 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,295 DEBUG Processing 1037/1111 atomic regions from SNP 310915 to 311515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,344 DEBUG Segmenting atomic regions: 2025-01-31 09:45:57,345 DEBUG Processing 54/725 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,443 DEBUG Processing 1/689 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:57,472 DEBUG Processing 20/710 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,481 DEBUG Processing 251/825 atomic regions from SNP 75169 to 75769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,557 DEBUG Processing 55/725 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,564 DEBUG Processing 1038/1111 atomic regions from SNP 311215 to 311815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,673 DEBUG Processing 2/689 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:57,680 DEBUG Processing 21/710 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,712 DEBUG Processing 252/825 atomic regions from SNP 75469 to 76069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,771 DEBUG Processing 56/725 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,858 DEBUG Processing 1039/1111 atomic regions from SNP 311515 to 312115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,893 DEBUG Processing 22/710 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,905 DEBUG Processing 3/689 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:57,943 DEBUG Processing 253/825 atomic regions from SNP 75769 to 76369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,990 DEBUG Processing 57/725 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,107 DEBUG Processing 23/710 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,137 DEBUG Processing 4/689 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:58,142 DEBUG Processing 1040/1111 atomic regions from SNP 311815 to 312415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,180 DEBUG Processing 254/825 atomic regions from SNP 76069 to 76669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,208 DEBUG Processing 58/725 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,325 DEBUG Processing 24/710 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,364 DEBUG Processing 5/689 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:58,420 DEBUG Processing 59/725 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,421 DEBUG Processing 1041/1111 atomic regions from SNP 312115 to 312715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,421 DEBUG Processing 255/825 atomic regions from SNP 76369 to 76969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,539 DEBUG Processing 25/710 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,610 DEBUG Processing 6/689 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:58,634 DEBUG Processing 60/725 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,662 DEBUG Processing 256/825 atomic regions from SNP 76669 to 77269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,692 DEBUG Processing 1042/1111 atomic regions from SNP 312415 to 313015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,743 DEBUG Processing 26/710 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,845 DEBUG Processing 61/725 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,862 DEBUG Processing 7/689 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:58,896 DEBUG Processing 257/825 atomic regions from SNP 76969 to 77569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,950 DEBUG Processing 27/710 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,960 DEBUG Processing 1043/1111 atomic regions from SNP 312715 to 313315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,056 DEBUG Processing 62/725 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,101 DEBUG Processing 8/689 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,156 DEBUG Processing 258/825 atomic regions from SNP 77269 to 77869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,165 DEBUG Processing 28/710 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,233 DEBUG Processing 1044/1111 atomic regions from SNP 313015 to 313615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,266 DEBUG Processing 63/725 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,342 DEBUG Processing 9/689 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,373 DEBUG Processing 29/710 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,417 DEBUG Processing 259/825 atomic regions from SNP 77569 to 78169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,482 DEBUG Processing 64/725 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,505 DEBUG Processing 1045/1111 atomic regions from SNP 313315 to 313915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,578 DEBUG Processing 30/710 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,587 DEBUG Processing 10/689 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,648 DEBUG Processing 260/825 atomic regions from SNP 77869 to 78469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,705 DEBUG Processing 65/725 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,787 DEBUG Processing 1046/1111 atomic regions from SNP 313615 to 314215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,791 DEBUG Processing 31/710 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,825 DEBUG Processing 11/689 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,876 DEBUG Processing 261/825 atomic regions from SNP 78169 to 78769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,924 DEBUG Processing 66/725 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,011 DEBUG Processing 32/710 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,081 DEBUG Processing 1047/1111 atomic regions from SNP 313915 to 314515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,084 DEBUG Processing 12/689 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,111 DEBUG Processing 262/825 atomic regions from SNP 78469 to 79069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,139 DEBUG Processing 67/725 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,227 DEBUG Processing 33/710 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,317 DEBUG Processing 13/689 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,347 DEBUG Processing 263/825 atomic regions from SNP 78769 to 79369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,358 DEBUG Processing 68/725 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,384 DEBUG Processing 1048/1111 atomic regions from SNP 314215 to 314815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,437 DEBUG Processing 34/710 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,558 DEBUG Processing 14/689 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,582 DEBUG Processing 69/725 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,590 DEBUG Processing 264/825 atomic regions from SNP 79069 to 79669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,652 DEBUG Processing 35/710 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,668 DEBUG Processing 1049/1111 atomic regions from SNP 314515 to 315115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,788 DEBUG Processing 15/689 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,804 DEBUG Processing 70/725 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,827 DEBUG Processing 265/825 atomic regions from SNP 79369 to 79969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,873 DEBUG Processing 36/710 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,951 DEBUG Processing 1050/1111 atomic regions from SNP 314815 to 315415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,000 DEBUG Processing 16/689 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,017 DEBUG Processing 71/725 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,054 DEBUG Processing 266/825 atomic regions from SNP 79669 to 80269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,090 DEBUG Processing 37/710 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,219 DEBUG Processing 17/689 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,229 DEBUG Processing 72/725 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,259 DEBUG Processing 1051/1111 atomic regions from SNP 315115 to 315715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,280 DEBUG Processing 267/825 atomic regions from SNP 79969 to 80569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,303 DEBUG Processing 38/710 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,442 DEBUG Processing 18/689 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,446 DEBUG Processing 73/725 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,501 DEBUG Processing 268/825 atomic regions from SNP 80269 to 80869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,510 DEBUG Processing 39/710 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,556 DEBUG Processing 1052/1111 atomic regions from SNP 315415 to 316015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,662 DEBUG Processing 19/689 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,669 DEBUG Processing 74/725 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,724 DEBUG Processing 40/710 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,726 DEBUG Processing 269/825 atomic regions from SNP 80569 to 81169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,824 DEBUG Processing 1053/1111 atomic regions from SNP 315715 to 316315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,890 DEBUG Processing 75/725 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,890 DEBUG Processing 20/689 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,946 DEBUG Processing 41/710 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,963 DEBUG Processing 270/825 atomic regions from SNP 80869 to 81469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,086 DEBUG Processing 1054/1111 atomic regions from SNP 316015 to 316615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,104 DEBUG Processing 76/725 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,127 DEBUG Processing 21/689 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,163 DEBUG Processing 42/710 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,197 DEBUG Processing 271/825 atomic regions from SNP 81169 to 81769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,316 DEBUG Processing 77/725 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,356 DEBUG Processing 1055/1111 atomic regions from SNP 316315 to 316915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,371 DEBUG Processing 22/689 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,382 DEBUG Processing 43/710 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,449 DEBUG Processing 272/825 atomic regions from SNP 81469 to 82069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,527 DEBUG Processing 78/725 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,597 DEBUG Processing 44/710 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,616 DEBUG Processing 23/689 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,626 DEBUG Processing 1056/1111 atomic regions from SNP 316615 to 317215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,687 DEBUG Processing 273/825 atomic regions from SNP 81769 to 82369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,737 DEBUG Processing 79/725 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,810 DEBUG Processing 45/710 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,867 DEBUG Processing 24/689 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,906 DEBUG Processing 1057/1111 atomic regions from SNP 316915 to 317515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,924 DEBUG Processing 274/825 atomic regions from SNP 82069 to 82669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,958 DEBUG Processing 80/725 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,021 DEBUG Processing 46/710 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,095 DEBUG Processing 25/689 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,151 DEBUG Processing 275/825 atomic regions from SNP 82369 to 82969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,179 DEBUG Processing 81/725 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,183 DEBUG Processing 1058/1111 atomic regions from SNP 317215 to 317815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,264 DEBUG Processing 47/710 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,314 DEBUG Processing 26/689 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,378 DEBUG Processing 276/825 atomic regions from SNP 82669 to 83269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,398 DEBUG Processing 82/725 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,461 DEBUG Processing 1059/1111 atomic regions from SNP 317515 to 318115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,493 DEBUG Processing 48/710 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,539 DEBUG Processing 27/689 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,603 DEBUG Processing 277/825 atomic regions from SNP 82969 to 83569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,609 DEBUG Processing 83/725 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,705 DEBUG Processing 49/710 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,730 DEBUG Processing 1060/1111 atomic regions from SNP 317815 to 318415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,780 DEBUG Processing 28/689 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,822 DEBUG Processing 84/725 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,832 DEBUG Processing 278/825 atomic regions from SNP 83269 to 83869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,912 DEBUG Processing 50/710 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,001 DEBUG Processing 1061/1111 atomic regions from SNP 318115 to 318715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,037 DEBUG Processing 29/689 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,041 DEBUG Processing 85/725 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,068 DEBUG Processing 279/825 atomic regions from SNP 83569 to 84169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,114 DEBUG Processing 51/710 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,263 DEBUG Processing 86/725 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,265 DEBUG Processing 30/689 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,271 DEBUG Processing 1062/1111 atomic regions from SNP 318415 to 319015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,304 DEBUG Processing 280/825 atomic regions from SNP 83869 to 84469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,330 DEBUG Processing 52/710 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,477 DEBUG Processing 87/725 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,510 DEBUG Processing 31/689 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,538 DEBUG Processing 281/825 atomic regions from SNP 84169 to 84769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,548 DEBUG Processing 1063/1111 atomic regions from SNP 318715 to 319315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,556 DEBUG Processing 53/710 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,680 DEBUG Processing 88/725 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,763 DEBUG Processing 32/689 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,767 DEBUG Processing 282/825 atomic regions from SNP 84469 to 85069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,773 DEBUG Processing 54/710 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,826 DEBUG Processing 1064/1111 atomic regions from SNP 319015 to 319615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,889 DEBUG Processing 89/725 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,979 DEBUG Processing 55/710 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,990 DEBUG Processing 283/825 atomic regions from SNP 84769 to 85369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,001 DEBUG Processing 33/689 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,104 DEBUG Processing 1065/1111 atomic regions from SNP 319315 to 319915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,110 DEBUG Processing 90/725 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,187 DEBUG Processing 56/710 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,218 DEBUG Processing 284/825 atomic regions from SNP 85069 to 85669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,240 DEBUG Processing 34/689 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,331 DEBUG Processing 91/725 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,381 DEBUG Processing 1066/1111 atomic regions from SNP 319615 to 320215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,414 DEBUG Processing 57/710 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,451 DEBUG Processing 285/825 atomic regions from SNP 85369 to 85969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,479 DEBUG Processing 35/689 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,549 DEBUG Processing 92/725 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,647 DEBUG Processing 58/710 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,652 DEBUG Processing 1067/1111 atomic regions from SNP 319915 to 320515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,685 DEBUG Processing 286/825 atomic regions from SNP 85669 to 86269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,711 DEBUG Processing 36/689 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,769 DEBUG Processing 93/725 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,865 DEBUG Processing 59/710 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,915 DEBUG Processing 287/825 atomic regions from SNP 85969 to 86569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,926 DEBUG Processing 1068/1111 atomic regions from SNP 320215 to 320815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,936 DEBUG Processing 37/689 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,985 DEBUG Processing 94/725 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,077 DEBUG Processing 60/710 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,139 DEBUG Processing 288/825 atomic regions from SNP 86269 to 86869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,159 DEBUG Processing 38/689 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,197 DEBUG Processing 95/725 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,199 DEBUG Processing 1069/1111 atomic regions from SNP 320515 to 321115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,316 DEBUG Processing 61/710 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,364 DEBUG Processing 289/825 atomic regions from SNP 86569 to 87169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,381 DEBUG Processing 39/689 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,416 DEBUG Processing 96/725 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,475 DEBUG Processing 1070/1111 atomic regions from SNP 320815 to 321415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,522 DEBUG Processing 62/710 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,590 DEBUG Processing 290/825 atomic regions from SNP 86869 to 87469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,622 DEBUG Processing 40/689 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,634 DEBUG Processing 97/725 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,733 DEBUG Processing 63/710 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,756 DEBUG Processing 1071/1111 atomic regions from SNP 321115 to 321715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,816 DEBUG Processing 291/825 atomic regions from SNP 87169 to 87769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,844 DEBUG Processing 98/725 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,862 DEBUG Processing 41/689 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,949 DEBUG Processing 64/710 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,030 DEBUG Processing 1072/1111 atomic regions from SNP 321415 to 322015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,070 DEBUG Processing 99/725 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,075 DEBUG Processing 292/825 atomic regions from SNP 87469 to 88069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,103 DEBUG Processing 42/689 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,160 DEBUG Processing 65/710 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,304 DEBUG Processing 1073/1111 atomic regions from SNP 321715 to 322315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,316 DEBUG Processing 100/725 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,322 DEBUG Processing 293/825 atomic regions from SNP 87769 to 88369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,342 DEBUG Processing 43/689 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,369 DEBUG Processing 66/710 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,537 DEBUG Processing 101/725 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,565 DEBUG Processing 294/825 atomic regions from SNP 88069 to 88669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,567 DEBUG Processing 44/689 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,581 DEBUG Processing 1074/1111 atomic regions from SNP 322015 to 322615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,593 DEBUG Processing 67/710 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,755 DEBUG Processing 102/725 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,795 DEBUG Processing 45/689 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,803 DEBUG Processing 295/825 atomic regions from SNP 88369 to 88969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,833 DEBUG Processing 68/710 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,858 DEBUG Processing 1075/1111 atomic regions from SNP 322315 to 322915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,991 DEBUG Processing 103/725 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,018 DEBUG Processing 46/689 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,032 DEBUG Processing 296/825 atomic regions from SNP 88669 to 89269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,048 DEBUG Processing 69/710 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,130 DEBUG Processing 1076/1111 atomic regions from SNP 322615 to 323215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,244 DEBUG Processing 47/689 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,246 DEBUG Processing 104/725 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,264 DEBUG Processing 297/825 atomic regions from SNP 88969 to 89569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,267 DEBUG Processing 70/710 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,409 DEBUG Processing 1077/1111 atomic regions from SNP 322915 to 323515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,464 DEBUG Processing 105/725 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,471 DEBUG Processing 48/689 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,482 DEBUG Processing 71/710 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,496 DEBUG Processing 298/825 atomic regions from SNP 89269 to 89869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,681 DEBUG Processing 1078/1111 atomic regions from SNP 323215 to 323815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,687 DEBUG Processing 106/725 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,701 DEBUG Processing 72/710 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,701 DEBUG Processing 49/689 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,733 DEBUG Processing 299/825 atomic regions from SNP 89569 to 90169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,908 DEBUG Processing 107/725 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,916 DEBUG Processing 73/710 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,925 DEBUG Processing 50/689 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,966 DEBUG Processing 1079/1111 atomic regions from SNP 323515 to 324115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,972 DEBUG Processing 300/825 atomic regions from SNP 89869 to 90469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,120 DEBUG Processing 108/725 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,125 DEBUG Processing 74/710 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,139 DEBUG Processing 51/689 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,200 DEBUG Processing 301/825 atomic regions from SNP 90169 to 90769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,240 DEBUG Processing 1080/1111 atomic regions from SNP 323815 to 324415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,338 DEBUG Processing 109/725 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,339 DEBUG Processing 75/710 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,359 DEBUG Processing 52/689 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,423 DEBUG Processing 302/825 atomic regions from SNP 90469 to 91069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,508 DEBUG Processing 1081/1111 atomic regions from SNP 324115 to 324715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,558 DEBUG Processing 76/710 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,562 DEBUG Processing 110/725 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,592 DEBUG Processing 53/689 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,651 DEBUG Processing 303/825 atomic regions from SNP 90769 to 91369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,774 DEBUG Processing 77/710 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,777 DEBUG Processing 1082/1111 atomic regions from SNP 324415 to 325015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,784 DEBUG Processing 111/725 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,845 DEBUG Processing 54/689 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,882 DEBUG Processing 304/825 atomic regions from SNP 91069 to 91669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,993 DEBUG Processing 78/710 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,008 DEBUG Processing 112/725 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,057 DEBUG Processing 1083/1111 atomic regions from SNP 324715 to 325315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,088 DEBUG Processing 55/689 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,128 DEBUG Processing 305/825 atomic regions from SNP 91369 to 91969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,204 DEBUG Processing 79/710 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,223 DEBUG Processing 113/725 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,314 DEBUG Processing 56/689 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,333 DEBUG Processing 1084/1111 atomic regions from SNP 325015 to 325615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,366 DEBUG Processing 306/825 atomic regions from SNP 91669 to 92269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,409 DEBUG Processing 80/710 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,433 DEBUG Processing 114/725 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,533 DEBUG Processing 57/689 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,597 DEBUG Processing 307/825 atomic regions from SNP 91969 to 92569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,603 DEBUG Processing 1085/1111 atomic regions from SNP 325315 to 325915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,619 DEBUG Processing 81/710 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,647 DEBUG Processing 115/725 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,755 DEBUG Processing 58/689 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,825 DEBUG Processing 308/825 atomic regions from SNP 92269 to 92869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,829 DEBUG Processing 82/710 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,858 DEBUG Processing 116/725 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,893 DEBUG Processing 1086/1111 atomic regions from SNP 325615 to 326215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,980 DEBUG Processing 59/689 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,045 DEBUG Processing 83/710 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,055 DEBUG Processing 309/825 atomic regions from SNP 92569 to 93169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,072 DEBUG Processing 117/725 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,178 DEBUG Processing 1087/1111 atomic regions from SNP 325915 to 326515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,208 DEBUG Processing 60/689 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,264 DEBUG Processing 84/710 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,291 DEBUG Processing 310/825 atomic regions from SNP 92869 to 93469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,291 DEBUG Processing 118/725 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,435 DEBUG Processing 61/689 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,466 DEBUG Processing 1088/1111 atomic regions from SNP 326215 to 326815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,485 DEBUG Processing 85/710 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,516 DEBUG Processing 119/725 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,528 DEBUG Processing 311/825 atomic regions from SNP 93169 to 93769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,653 DEBUG Processing 62/689 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,699 DEBUG Processing 86/710 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,736 DEBUG Processing 120/725 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,763 DEBUG Processing 312/825 atomic regions from SNP 93469 to 94069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,766 DEBUG Processing 1089/1111 atomic regions from SNP 326515 to 327115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,891 DEBUG Processing 63/689 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,904 DEBUG Processing 87/710 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,951 DEBUG Processing 121/725 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,994 DEBUG Processing 313/825 atomic regions from SNP 93769 to 94369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,070 DEBUG Processing 1090/1111 atomic regions from SNP 326815 to 327415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,112 DEBUG Processing 88/710 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,120 DEBUG Processing 64/689 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,159 DEBUG Processing 122/725 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,219 DEBUG Processing 314/825 atomic regions from SNP 94069 to 94669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,334 DEBUG Processing 89/710 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,346 DEBUG Processing 65/689 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,357 DEBUG Processing 1091/1111 atomic regions from SNP 327115 to 327715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,375 DEBUG Processing 123/725 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,447 DEBUG Processing 315/825 atomic regions from SNP 94369 to 94969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,553 DEBUG Processing 90/710 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,567 DEBUG Processing 66/689 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,599 DEBUG Processing 124/725 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,663 DEBUG Processing 1092/1111 atomic regions from SNP 327415 to 328015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,679 DEBUG Processing 316/825 atomic regions from SNP 94669 to 95269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,762 DEBUG Processing 91/710 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,782 DEBUG Processing 67/689 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,814 DEBUG Processing 125/725 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,908 DEBUG Processing 317/825 atomic regions from SNP 94969 to 95569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,964 DEBUG Processing 1093/1111 atomic regions from SNP 327715 to 328315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,972 DEBUG Processing 92/710 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,002 DEBUG Processing 68/689 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,031 DEBUG Processing 126/725 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,133 DEBUG Processing 318/825 atomic regions from SNP 95269 to 95869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,185 DEBUG Processing 93/710 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,219 DEBUG Processing 69/689 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,247 DEBUG Processing 1094/1111 atomic regions from SNP 328015 to 328615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,248 DEBUG Processing 127/725 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,364 DEBUG Processing 319/825 atomic regions from SNP 95569 to 96169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,396 DEBUG Processing 94/710 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,440 DEBUG Processing 70/689 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,464 DEBUG Processing 128/725 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,520 DEBUG Processing 1095/1111 atomic regions from SNP 328315 to 328915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,594 DEBUG Processing 320/825 atomic regions from SNP 95869 to 96469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,605 DEBUG Processing 95/710 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,664 DEBUG Processing 71/689 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,680 DEBUG Processing 129/725 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,789 DEBUG Processing 1096/1111 atomic regions from SNP 328615 to 329215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,817 DEBUG Processing 96/710 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,820 DEBUG Processing 321/825 atomic regions from SNP 96169 to 96769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,895 DEBUG Processing 72/689 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,901 DEBUG Processing 130/725 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,024 DEBUG Processing 97/710 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,038 DEBUG Processing 322/825 atomic regions from SNP 96469 to 97069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,054 DEBUG Processing 1097/1111 atomic regions from SNP 328915 to 329515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,116 DEBUG Processing 131/725 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,118 DEBUG Processing 73/689 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,234 DEBUG Processing 98/710 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,257 DEBUG Processing 323/825 atomic regions from SNP 96769 to 97369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,322 DEBUG Processing 1098/1111 atomic regions from SNP 329215 to 329815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,327 DEBUG Processing 132/725 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,335 DEBUG Processing 74/689 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,449 DEBUG Processing 99/710 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,482 DEBUG Processing 324/825 atomic regions from SNP 97069 to 97669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,539 DEBUG Processing 133/725 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,550 DEBUG Processing 75/689 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,591 DEBUG Processing 1099/1111 atomic regions from SNP 329515 to 330115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,658 DEBUG Processing 100/710 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,708 DEBUG Processing 325/825 atomic regions from SNP 97369 to 97969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,752 DEBUG Processing 134/725 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,770 DEBUG Processing 76/689 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,863 DEBUG Processing 1100/1111 atomic regions from SNP 329815 to 330415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,872 DEBUG Processing 101/710 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,933 DEBUG Processing 326/825 atomic regions from SNP 97669 to 98269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,964 DEBUG Processing 135/725 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,996 DEBUG Processing 77/689 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,087 DEBUG Processing 102/710 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,132 DEBUG Processing 1101/1111 atomic regions from SNP 330115 to 330715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,153 DEBUG Processing 327/825 atomic regions from SNP 97969 to 98569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,175 DEBUG Processing 136/725 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,231 DEBUG Processing 78/689 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,322 DEBUG Processing 103/710 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,372 DEBUG Processing 328/825 atomic regions from SNP 98269 to 98869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,391 DEBUG Processing 137/725 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,403 DEBUG Processing 1102/1111 atomic regions from SNP 330415 to 331015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,471 DEBUG Processing 79/689 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,552 DEBUG Processing 104/710 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,595 DEBUG Processing 329/825 atomic regions from SNP 98569 to 99169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,609 DEBUG Processing 138/725 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,676 DEBUG Processing 1103/1111 atomic regions from SNP 330715 to 331315 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,684 DEBUG Processing 80/689 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,771 DEBUG Processing 105/710 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,822 DEBUG Processing 330/825 atomic regions from SNP 98869 to 99469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,828 DEBUG Processing 139/725 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,902 DEBUG Processing 81/689 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,944 DEBUG Processing 1104/1111 atomic regions from SNP 331015 to 331615 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,979 DEBUG Processing 106/710 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,042 DEBUG Processing 140/725 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,046 DEBUG Processing 331/825 atomic regions from SNP 99169 to 99769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,129 DEBUG Processing 82/689 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,194 DEBUG Processing 107/710 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,218 DEBUG Processing 1105/1111 atomic regions from SNP 331315 to 331915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,252 DEBUG Processing 141/725 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,267 DEBUG Processing 332/825 atomic regions from SNP 99469 to 100069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,343 DEBUG Processing 83/689 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,404 DEBUG Processing 108/710 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,467 DEBUG Processing 142/725 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,488 DEBUG Processing 1106/1111 atomic regions from SNP 331615 to 332215 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,495 DEBUG Processing 333/825 atomic regions from SNP 99769 to 100369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,553 DEBUG Processing 84/689 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,610 DEBUG Processing 109/710 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,683 DEBUG Processing 143/725 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,727 DEBUG Processing 334/825 atomic regions from SNP 100069 to 100669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,761 DEBUG Processing 1107/1111 atomic regions from SNP 331915 to 332515 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,770 DEBUG Processing 85/689 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,818 DEBUG Processing 110/710 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,894 DEBUG Processing 144/725 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,951 DEBUG Processing 335/825 atomic regions from SNP 100369 to 100969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,987 DEBUG Processing 86/689 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,026 DEBUG Processing 111/710 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,027 DEBUG Processing 1108/1111 atomic regions from SNP 332215 to 332815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,105 DEBUG Processing 145/725 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,174 DEBUG Processing 336/825 atomic regions from SNP 100669 to 101269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,200 DEBUG Processing 87/689 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,237 DEBUG Processing 112/710 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,308 DEBUG Processing 1109/1111 atomic regions from SNP 332515 to 333115 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,321 DEBUG Processing 146/725 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,403 DEBUG Processing 337/825 atomic regions from SNP 100969 to 101569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,416 DEBUG Processing 88/689 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,444 DEBUG Processing 113/710 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,535 DEBUG Processing 147/725 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,575 DEBUG Processing 1110/1111 atomic regions from SNP 332815 to 333415 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,639 DEBUG Processing 338/825 atomic regions from SNP 101269 to 101869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,640 DEBUG Processing 89/689 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,654 DEBUG Processing 114/710 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,747 DEBUG Processing 148/725 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,840 DEBUG Processing 1111/1111 atomic regions from SNP 333115 to 333715 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,864 DEBUG Processing 115/710 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,869 DEBUG Processing 90/689 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,877 DEBUG Processing 339/825 atomic regions from SNP 101569 to 102169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,957 DEBUG Processing 149/725 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,964 DEBUG Unique SNPs positions in subchromosome 1: 333716 2025-01-31 09:46:18,069 DEBUG Processing 116/710 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,093 DEBUG Processing 91/689 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,111 DEBUG Processing 340/825 atomic regions from SNP 101869 to 102469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,177 DEBUG Processing 150/725 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,272 DEBUG Processing 117/710 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,310 DEBUG Processing 92/689 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,340 DEBUG Processing 341/825 atomic regions from SNP 102169 to 102769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,396 DEBUG Processing 151/725 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,487 DEBUG Processing 118/710 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,528 DEBUG Processing 93/689 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,566 DEBUG Processing 342/825 atomic regions from SNP 102469 to 103069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,606 DEBUG Processing 152/725 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,704 DEBUG Processing 119/710 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,747 DEBUG Processing 94/689 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,793 DEBUG Processing 343/825 atomic regions from SNP 102769 to 103369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,813 DEBUG Processing 153/725 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,934 DEBUG Processing 120/710 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,969 DEBUG Processing 95/689 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,022 DEBUG Processing 344/825 atomic regions from SNP 103069 to 103669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,024 DEBUG Processing 154/725 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,136 DEBUG Processing 121/710 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,186 DEBUG Processing 96/689 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,235 DEBUG Processing 155/725 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,254 DEBUG Processing 345/825 atomic regions from SNP 103369 to 103969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,341 DEBUG Processing 122/710 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,391 DEBUG Processing 97/689 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,439 DEBUG Processing 156/725 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,486 DEBUG Processing 346/825 atomic regions from SNP 103669 to 104269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,558 DEBUG Processing 123/710 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,602 DEBUG Processing 98/689 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,642 DEBUG Processing 157/725 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,704 DEBUG Processing 347/825 atomic regions from SNP 103969 to 104569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,774 DEBUG Processing 124/710 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,825 DEBUG Processing 99/689 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,855 DEBUG Processing 158/725 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,921 DEBUG Processing 348/825 atomic regions from SNP 104269 to 104869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,978 DEBUG Processing 125/710 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,051 DEBUG Processing 100/689 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,082 DEBUG Processing 159/725 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,149 DEBUG Processing 349/825 atomic regions from SNP 104569 to 105169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,178 DEBUG Processing 126/710 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,271 DEBUG Processing 101/689 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,303 DEBUG Processing 160/725 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,382 DEBUG Processing 350/825 atomic regions from SNP 104869 to 105469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,383 DEBUG Processing 127/710 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,482 DEBUG Processing 102/689 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,516 DEBUG Processing 161/725 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,598 DEBUG Processing 128/710 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,614 DEBUG Processing 351/825 atomic regions from SNP 105169 to 105769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,701 DEBUG Processing 103/689 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,717 DEBUG Processing 162/725 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,826 DEBUG Processing 129/710 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,840 DEBUG Processing 352/825 atomic regions from SNP 105469 to 106069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,919 DEBUG Processing 163/725 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,921 DEBUG Processing 104/689 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,049 DEBUG Processing 130/710 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,065 DEBUG Processing 353/825 atomic regions from SNP 105769 to 106369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,128 DEBUG Processing 164/725 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,142 DEBUG Processing 105/689 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,258 DEBUG Processing 131/710 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,292 DEBUG Processing 354/825 atomic regions from SNP 106069 to 106669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,336 DEBUG Processing 165/725 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,354 DEBUG Processing 106/689 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,465 DEBUG Processing 132/710 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,524 DEBUG Processing 355/825 atomic regions from SNP 106369 to 106969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,544 DEBUG Processing 166/725 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,581 DEBUG Processing 107/689 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,680 DEBUG Processing 133/710 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,760 DEBUG Processing 356/825 atomic regions from SNP 106669 to 107269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,760 DEBUG Processing 167/725 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,824 DEBUG Processing 108/689 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,891 DEBUG Processing 134/710 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,977 DEBUG Processing 168/725 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,997 DEBUG Processing 357/825 atomic regions from SNP 106969 to 107569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,061 DEBUG Processing 109/689 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,095 DEBUG Processing 135/710 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,195 DEBUG Processing 169/725 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,233 DEBUG Processing 358/825 atomic regions from SNP 107269 to 107869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,297 DEBUG Processing 136/710 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,316 DEBUG Processing 110/689 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,412 DEBUG Processing 170/725 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,476 DEBUG Processing 359/825 atomic regions from SNP 107569 to 108169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,504 DEBUG Processing 137/710 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,578 DEBUG Processing 111/689 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,622 DEBUG Processing 171/725 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,713 DEBUG Processing 360/825 atomic regions from SNP 107869 to 108469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,717 DEBUG Processing 138/710 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,826 DEBUG Processing 172/725 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,832 DEBUG Processing 112/689 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,922 DEBUG Processing 139/710 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,936 DEBUG Processing 361/825 atomic regions from SNP 108169 to 108769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,029 DEBUG Processing 173/725 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,076 DEBUG Processing 113/689 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,129 DEBUG Processing 140/710 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,165 DEBUG Processing 362/825 atomic regions from SNP 108469 to 109069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,231 DEBUG Processing 174/725 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,325 DEBUG Processing 114/689 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,335 DEBUG Processing 141/710 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,401 DEBUG Processing 363/825 atomic regions from SNP 108769 to 109369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,436 DEBUG Processing 175/725 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,538 DEBUG Processing 142/710 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,577 DEBUG Processing 115/689 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,635 DEBUG Processing 364/825 atomic regions from SNP 109069 to 109669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,644 DEBUG Processing 176/725 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,742 DEBUG Processing 143/710 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,827 DEBUG Processing 116/689 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,852 DEBUG Processing 177/725 atomic regions from SNP 52976 to 53577 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,865 DEBUG Processing 365/825 atomic regions from SNP 109369 to 109969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,943 DEBUG Processing 144/710 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,059 DEBUG Processing 117/689 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,062 DEBUG Processing 178/725 atomic regions from SNP 53277 to 53878 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,096 DEBUG Processing 366/825 atomic regions from SNP 109669 to 110269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,144 DEBUG Processing 145/710 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,280 DEBUG Processing 179/725 atomic regions from SNP 53578 to 54179 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,283 DEBUG Processing 118/689 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,326 DEBUG Processing 367/825 atomic regions from SNP 109969 to 110569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,350 DEBUG Processing 146/710 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,495 DEBUG Processing 180/725 atomic regions from SNP 53879 to 54480 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,508 DEBUG Processing 119/689 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,556 DEBUG Processing 368/825 atomic regions from SNP 110269 to 110869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,559 DEBUG Processing 147/710 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,707 DEBUG Processing 181/725 atomic regions from SNP 54180 to 54781 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,735 DEBUG Processing 120/689 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,773 DEBUG Processing 148/710 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,793 DEBUG Processing 369/825 atomic regions from SNP 110569 to 111169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,913 DEBUG Processing 182/725 atomic regions from SNP 54481 to 55082 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,958 DEBUG Processing 121/689 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,984 DEBUG Processing 149/710 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,031 DEBUG Processing 370/825 atomic regions from SNP 110869 to 111469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,116 DEBUG Processing 183/725 atomic regions from SNP 54782 to 55383 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,175 DEBUG Processing 122/689 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,197 DEBUG Processing 150/710 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,271 DEBUG Processing 371/825 atomic regions from SNP 111169 to 111769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,323 DEBUG Processing 184/725 atomic regions from SNP 55083 to 55684 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,408 DEBUG Processing 151/710 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,416 DEBUG Processing 123/689 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,506 DEBUG Processing 372/825 atomic regions from SNP 111469 to 112069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,535 DEBUG Processing 185/725 atomic regions from SNP 55384 to 55985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,613 DEBUG Processing 152/710 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,652 DEBUG Processing 124/689 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,742 DEBUG Processing 373/825 atomic regions from SNP 111769 to 112369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,747 DEBUG Processing 186/725 atomic regions from SNP 55685 to 56286 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,814 DEBUG Processing 153/710 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,878 DEBUG Processing 125/689 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,966 DEBUG Processing 187/725 atomic regions from SNP 55986 to 56587 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,977 DEBUG Processing 374/825 atomic regions from SNP 112069 to 112669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,017 DEBUG Processing 154/710 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,098 DEBUG Processing 126/689 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,180 DEBUG Processing 188/725 atomic regions from SNP 56287 to 56888 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,214 DEBUG Processing 375/825 atomic regions from SNP 112369 to 112969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,227 DEBUG Processing 155/710 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,316 DEBUG Processing 127/689 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,392 DEBUG Processing 189/725 atomic regions from SNP 56588 to 57189 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,436 DEBUG Processing 156/710 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,455 DEBUG Processing 376/825 atomic regions from SNP 112669 to 113269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,529 DEBUG Processing 128/689 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,598 DEBUG Processing 190/725 atomic regions from SNP 56889 to 57490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,640 DEBUG Processing 157/710 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,718 DEBUG Processing 377/825 atomic regions from SNP 112969 to 113569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,752 DEBUG Processing 129/689 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,804 DEBUG Processing 191/725 atomic regions from SNP 57190 to 57790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,840 DEBUG Processing 158/710 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,956 DEBUG Processing 378/825 atomic regions from SNP 113269 to 113869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,980 DEBUG Processing 130/689 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,015 DEBUG Processing 192/725 atomic regions from SNP 57490 to 58090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,043 DEBUG Processing 159/710 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,190 DEBUG Processing 379/825 atomic regions from SNP 113569 to 114169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,204 DEBUG Processing 131/689 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,224 DEBUG Processing 193/725 atomic regions from SNP 57790 to 58390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,247 DEBUG Processing 160/710 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,426 DEBUG Processing 380/825 atomic regions from SNP 113869 to 114469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,430 DEBUG Processing 132/689 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,433 DEBUG Processing 194/725 atomic regions from SNP 58090 to 58690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,452 DEBUG Processing 161/710 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,648 DEBUG Processing 195/725 atomic regions from SNP 58390 to 58990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,658 DEBUG Processing 133/689 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,662 DEBUG Processing 162/710 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,678 DEBUG Processing 381/825 atomic regions from SNP 114169 to 114769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,858 DEBUG Processing 196/725 atomic regions from SNP 58690 to 59290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,867 DEBUG Processing 163/710 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,883 DEBUG Processing 134/689 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,909 DEBUG Processing 382/825 atomic regions from SNP 114469 to 115069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,073 DEBUG Processing 197/725 atomic regions from SNP 58990 to 59590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,082 DEBUG Processing 164/710 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,115 DEBUG Processing 135/689 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,142 DEBUG Processing 383/825 atomic regions from SNP 114769 to 115369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,288 DEBUG Processing 198/725 atomic regions from SNP 59290 to 59890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,294 DEBUG Processing 165/710 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,341 DEBUG Processing 136/689 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,379 DEBUG Processing 384/825 atomic regions from SNP 115069 to 115669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,511 DEBUG Processing 199/725 atomic regions from SNP 59590 to 60190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,515 DEBUG Processing 166/710 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,573 DEBUG Processing 137/689 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,618 DEBUG Processing 385/825 atomic regions from SNP 115369 to 115969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,719 DEBUG Processing 200/725 atomic regions from SNP 59890 to 60490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,725 DEBUG Processing 167/710 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,799 DEBUG Processing 138/689 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,865 DEBUG Processing 386/825 atomic regions from SNP 115669 to 116269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,927 DEBUG Processing 201/725 atomic regions from SNP 60190 to 60790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,930 DEBUG Processing 168/710 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,020 DEBUG Processing 139/689 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,162 DEBUG Processing 387/825 atomic regions from SNP 115969 to 116569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,171 DEBUG Processing 169/710 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,175 DEBUG Processing 202/725 atomic regions from SNP 60490 to 61090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,282 DEBUG Processing 140/689 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,394 DEBUG Processing 170/710 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,399 DEBUG Processing 203/725 atomic regions from SNP 60790 to 61390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,432 DEBUG Processing 388/825 atomic regions from SNP 116269 to 116869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,498 DEBUG Processing 141/689 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,597 DEBUG Processing 171/710 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,605 DEBUG Processing 204/725 atomic regions from SNP 61090 to 61690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,670 DEBUG Processing 389/825 atomic regions from SNP 116569 to 117169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,721 DEBUG Processing 142/689 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,800 DEBUG Processing 172/710 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,812 DEBUG Processing 205/725 atomic regions from SNP 61390 to 61990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,903 DEBUG Processing 390/825 atomic regions from SNP 116869 to 117469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,946 DEBUG Processing 143/689 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,009 DEBUG Processing 173/710 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,020 DEBUG Processing 206/725 atomic regions from SNP 61690 to 62290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,131 DEBUG Processing 391/825 atomic regions from SNP 117169 to 117769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,164 DEBUG Processing 144/689 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,222 DEBUG Processing 174/710 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,237 DEBUG Processing 207/725 atomic regions from SNP 61990 to 62590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,361 DEBUG Processing 392/825 atomic regions from SNP 117469 to 118069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,389 DEBUG Processing 145/689 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,443 DEBUG Processing 175/710 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,460 DEBUG Subchromosome time: 354.6064925559331, subchromosome SNPs: 333716 2025-01-31 09:46:30,461 DEBUG Estimated BADs: [0.74, 4.45, 0.74, 4.45, 2.23, 20.03, 0.74, 2.23, 4.45, 1.11, 4.45, 13.35, 2.23, 15.58, 4.45, 1.11, 2.23, 0.45, 4.45, 2.23, 6.68, 2.23, 1.11, 4.45, 17.80, 2.23, 6.68, 4.45, 2.23, 8.90, 4.45] SNP counts: [10240, 735, 38689, 10850, 8808, 106, 12741, 19130, 4604, 12318, 3839, 2051, 18186, 715, 13558, 19838, 4380, 15034, 3357, 18997, 10745, 6483, 18579, 35358, 678, 12048, 5404, 7796, 10142, 2117, 6190] SNP IDs counts: [10240, 735, 38689, 10850, 8808, 106, 12741, 19130, 4604, 12318, 3839, 2051, 18186, 715, 13558, 19838, 4380, 15034, 3357, 18997, 10745, 6483, 18579, 35358, 678, 12048, 5404, 7796, 10142, 2117, 6190] Critical gap: 765247bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.53Mbp, 9.94Mbp, 33.55Mbp, 39.36Mbp, 44.12Mbp, 44.17Mbp, 52.10Mbp, 62.70Mbp, 65.19Mbp, 72.20Mbp, 74.27Mbp, 75.42Mbp, 86.14Mbp, 86.51Mbp, 93.72Mbp, 105.96Mbp, 108.54Mbp, 118.31Mbp, 120.07Mbp, 130.72Mbp, 136.34Mbp, 140.15Mbp, 151.74Mbp, 171.01Mbp, 171.37Mbp, 178.30Mbp, 181.14Mbp, 185.43Mbp, 190.83Mbp, 191.95Mbp, 195.47Mbp] 2025-01-31 09:46:30,461 DEBUG chr1 time: 354.6071351938881 s 2025-01-31 09:46:30,462 DEBUG Processing 208/725 atomic regions from SNP 62290 to 62890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,595 DEBUG Processing 393/825 atomic regions from SNP 117769 to 118369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,612 DEBUG Processing 146/689 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,646 DEBUG chr1: Fitting background model for 31 segments 2025-01-31 09:46:30,659 DEBUG Processing 176/710 atomic regions from SNP 52675 to 53275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,685 DEBUG Processing 209/725 atomic regions from SNP 62590 to 63190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,828 DEBUG Processing 394/825 atomic regions from SNP 118069 to 118669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,835 DEBUG Processing 147/689 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,871 DEBUG Processing 177/710 atomic regions from SNP 52975 to 53575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,913 DEBUG Processing 210/725 atomic regions from SNP 62890 to 63490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,072 DEBUG Processing 148/689 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,074 DEBUG Processing 395/825 atomic regions from SNP 118369 to 118969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,104 DEBUG Processing 178/710 atomic regions from SNP 53275 to 53875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,173 DEBUG Processing 211/725 atomic regions from SNP 63190 to 63790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,288 DEBUG Processing 149/689 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,296 DEBUG Processing 396/825 atomic regions from SNP 118669 to 119269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,321 DEBUG Processing 179/710 atomic regions from SNP 53575 to 54175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,421 DEBUG Processing 212/725 atomic regions from SNP 63490 to 64090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,508 DEBUG Processing 150/689 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,522 DEBUG Processing 397/825 atomic regions from SNP 118969 to 119569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,530 DEBUG Processing 180/710 atomic regions from SNP 53875 to 54475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,638 DEBUG Processing 213/725 atomic regions from SNP 63790 to 64390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,730 DEBUG Processing 151/689 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,735 DEBUG Processing 181/710 atomic regions from SNP 54175 to 54775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,751 DEBUG Processing 398/825 atomic regions from SNP 119269 to 119869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,847 DEBUG Processing 214/725 atomic regions from SNP 64090 to 64690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,937 DEBUG Processing 182/710 atomic regions from SNP 54475 to 55075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,948 DEBUG Processing 152/689 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,979 DEBUG Processing 399/825 atomic regions from SNP 119569 to 120169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,054 DEBUG Processing 215/725 atomic regions from SNP 64390 to 64990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,151 DEBUG Processing 183/710 atomic regions from SNP 54775 to 55375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,171 DEBUG Processing 153/689 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,211 DEBUG Processing 400/825 atomic regions from SNP 119869 to 120469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,265 DEBUG Processing 216/725 atomic regions from SNP 64690 to 65290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,372 DEBUG Processing 184/710 atomic regions from SNP 55075 to 55675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,399 DEBUG Processing 154/689 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,444 DEBUG Processing 401/825 atomic regions from SNP 120169 to 120769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,477 DEBUG Processing 217/725 atomic regions from SNP 64990 to 65590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,578 DEBUG Processing 185/710 atomic regions from SNP 55375 to 55975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,630 DEBUG Processing 155/689 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,685 DEBUG Processing 402/825 atomic regions from SNP 120469 to 121069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,695 DEBUG Processing 218/725 atomic regions from SNP 65290 to 65890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,779 DEBUG Processing 186/710 atomic regions from SNP 55675 to 56275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,854 DEBUG Processing 156/689 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,911 DEBUG Processing 219/725 atomic regions from SNP 65590 to 66190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,920 DEBUG Processing 403/825 atomic regions from SNP 120769 to 121369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,981 DEBUG Processing 187/710 atomic regions from SNP 55975 to 56575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,067 DEBUG Processing 157/689 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,128 DEBUG Processing 220/725 atomic regions from SNP 65890 to 66490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,158 DEBUG Processing 404/825 atomic regions from SNP 121069 to 121669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,194 DEBUG Processing 188/710 atomic regions from SNP 56275 to 56875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,276 DEBUG Processing 158/689 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,342 DEBUG Processing 221/725 atomic regions from SNP 66190 to 66790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,394 DEBUG Processing 405/825 atomic regions from SNP 121369 to 121969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,414 DEBUG Processing 189/710 atomic regions from SNP 56575 to 57175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,494 DEBUG Processing 159/689 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,553 DEBUG Processing 222/725 atomic regions from SNP 66490 to 67090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,623 DEBUG Processing 406/825 atomic regions from SNP 121669 to 122269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,629 DEBUG Processing 190/710 atomic regions from SNP 56875 to 57475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,712 DEBUG Processing 160/689 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,764 DEBUG Processing 223/725 atomic regions from SNP 66790 to 67390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,838 DEBUG Processing 191/710 atomic regions from SNP 57175 to 57775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,851 DEBUG Processing 407/825 atomic regions from SNP 121969 to 122569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,934 DEBUG Processing 161/689 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,009 DEBUG Processing 224/725 atomic regions from SNP 67090 to 67690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,045 DEBUG Processing 192/710 atomic regions from SNP 57475 to 58075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,076 DEBUG Processing 408/825 atomic regions from SNP 122269 to 122869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,153 DEBUG Processing 162/689 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,242 DEBUG Processing 225/725 atomic regions from SNP 67390 to 67990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,254 DEBUG Processing 193/710 atomic regions from SNP 57775 to 58375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,299 DEBUG Processing 409/825 atomic regions from SNP 122569 to 123169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,372 DEBUG Processing 163/689 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,470 DEBUG Processing 194/710 atomic regions from SNP 58075 to 58675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,479 DEBUG Processing 226/725 atomic regions from SNP 67690 to 68290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,527 DEBUG Processing 410/825 atomic regions from SNP 122869 to 123469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,591 DEBUG Processing 164/689 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,690 DEBUG Processing 195/710 atomic regions from SNP 58375 to 58975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,704 DEBUG Processing 227/725 atomic regions from SNP 67990 to 68590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,759 DEBUG Processing 411/825 atomic regions from SNP 123169 to 123769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,808 DEBUG Processing 165/689 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,905 DEBUG Processing 196/710 atomic regions from SNP 58675 to 59275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,927 DEBUG Processing 228/725 atomic regions from SNP 68290 to 68890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,991 DEBUG Processing 412/825 atomic regions from SNP 123469 to 124069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,029 DEBUG Processing 166/689 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,116 DEBUG Processing 197/710 atomic regions from SNP 58975 to 59575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,142 DEBUG Processing 229/725 atomic regions from SNP 68590 to 69190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,223 DEBUG Processing 413/825 atomic regions from SNP 123769 to 124369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,252 DEBUG Processing 167/689 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,323 DEBUG Processing 198/710 atomic regions from SNP 59275 to 59875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,351 DEBUG Processing 230/725 atomic regions from SNP 68890 to 69490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,453 DEBUG Processing 414/825 atomic regions from SNP 124069 to 124669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,475 DEBUG Processing 168/689 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,531 DEBUG Processing 199/710 atomic regions from SNP 59575 to 60175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,561 DEBUG Processing 231/725 atomic regions from SNP 69190 to 69790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,680 DEBUG Processing 415/825 atomic regions from SNP 124369 to 124969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,697 DEBUG Processing 169/689 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,745 DEBUG Processing 200/710 atomic regions from SNP 59875 to 60475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,799 DEBUG Processing 232/725 atomic regions from SNP 69490 to 70090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,910 DEBUG Processing 416/825 atomic regions from SNP 124669 to 125269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,919 DEBUG Processing 170/689 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,963 DEBUG Processing 201/710 atomic regions from SNP 60175 to 60775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,023 DEBUG Processing 233/725 atomic regions from SNP 69790 to 70390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,141 DEBUG Processing 171/689 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,142 DEBUG Processing 417/825 atomic regions from SNP 124969 to 125569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,175 DEBUG Processing 202/710 atomic regions from SNP 60475 to 61075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,235 DEBUG Processing 234/725 atomic regions from SNP 70090 to 70690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,363 DEBUG Processing 172/689 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,375 DEBUG Processing 418/825 atomic regions from SNP 125269 to 125869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,379 DEBUG Processing 203/710 atomic regions from SNP 60775 to 61375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,453 DEBUG Processing 235/725 atomic regions from SNP 70390 to 70990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,584 DEBUG Processing 204/710 atomic regions from SNP 61075 to 61675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,585 DEBUG Processing 173/689 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,609 DEBUG Processing 419/825 atomic regions from SNP 125569 to 126169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,671 DEBUG Processing 236/725 atomic regions from SNP 70690 to 71290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,794 DEBUG Processing 205/710 atomic regions from SNP 61375 to 61975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,804 DEBUG Processing 174/689 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,840 DEBUG Processing 420/825 atomic regions from SNP 125869 to 126469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,884 DEBUG Processing 237/725 atomic regions from SNP 70990 to 71590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,001 DEBUG Processing 206/710 atomic regions from SNP 61675 to 62275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,031 DEBUG Processing 175/689 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,073 DEBUG Processing 421/825 atomic regions from SNP 126169 to 126769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,096 DEBUG Processing 238/725 atomic regions from SNP 71290 to 71890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,205 DEBUG Processing 207/710 atomic regions from SNP 61975 to 62575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,262 DEBUG Processing 176/689 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,313 DEBUG Processing 422/825 atomic regions from SNP 126469 to 127069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,317 DEBUG Processing 239/725 atomic regions from SNP 71590 to 72190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,411 DEBUG Processing 208/710 atomic regions from SNP 62275 to 62875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,494 DEBUG Processing 177/689 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,536 DEBUG Processing 240/725 atomic regions from SNP 71890 to 72490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,558 DEBUG Processing 423/825 atomic regions from SNP 126769 to 127369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,633 DEBUG Processing 209/710 atomic regions from SNP 62575 to 63175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,721 DEBUG Processing 178/689 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,749 DEBUG Processing 241/725 atomic regions from SNP 72190 to 72790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,805 DEBUG Processing 424/825 atomic regions from SNP 127069 to 127669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,857 DEBUG Processing 210/710 atomic regions from SNP 62875 to 63475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,944 DEBUG Processing 179/689 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,960 DEBUG Processing 242/725 atomic regions from SNP 72490 to 73090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,040 DEBUG Processing 425/825 atomic regions from SNP 127369 to 127969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,081 DEBUG Processing 211/710 atomic regions from SNP 63175 to 63775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,177 DEBUG Processing 180/689 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,179 DEBUG Processing 243/725 atomic regions from SNP 72790 to 73390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,264 DEBUG Processing 426/825 atomic regions from SNP 127669 to 128269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,286 DEBUG Processing 212/710 atomic regions from SNP 63475 to 64075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,400 DEBUG Processing 244/725 atomic regions from SNP 73090 to 73690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,415 DEBUG Processing 181/689 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,493 DEBUG Processing 427/825 atomic regions from SNP 127969 to 128569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,494 DEBUG Processing 213/710 atomic regions from SNP 63775 to 64375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,623 DEBUG Processing 245/725 atomic regions from SNP 73390 to 73990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,648 DEBUG Processing 182/689 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,713 DEBUG Processing 214/710 atomic regions from SNP 64075 to 64675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,728 DEBUG Processing 428/825 atomic regions from SNP 128269 to 128869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,833 DEBUG Processing 246/725 atomic regions from SNP 73690 to 74290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,872 DEBUG Processing 183/689 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,925 DEBUG Processing 215/710 atomic regions from SNP 64375 to 64975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,967 DEBUG Processing 429/825 atomic regions from SNP 128569 to 129169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,049 DEBUG Processing 247/725 atomic regions from SNP 73990 to 74590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,096 DEBUG Processing 184/689 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,137 DEBUG Processing 216/710 atomic regions from SNP 64675 to 65275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,209 DEBUG Processing 430/825 atomic regions from SNP 128869 to 129469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,274 DEBUG Processing 248/725 atomic regions from SNP 74290 to 74890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,328 DEBUG Processing 185/689 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,355 DEBUG Processing 217/710 atomic regions from SNP 64975 to 65575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,441 DEBUG Processing 431/825 atomic regions from SNP 129169 to 129769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,496 DEBUG Processing 249/725 atomic regions from SNP 74590 to 75190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,561 DEBUG Processing 186/689 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,576 DEBUG Processing 218/710 atomic regions from SNP 65275 to 65875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,671 DEBUG Processing 432/825 atomic regions from SNP 129469 to 130069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,717 DEBUG Processing 250/725 atomic regions from SNP 74890 to 75490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,793 DEBUG Processing 187/689 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,797 DEBUG Processing 219/710 atomic regions from SNP 65575 to 66175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,904 DEBUG Processing 433/825 atomic regions from SNP 129769 to 130369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,933 DEBUG Processing 251/725 atomic regions from SNP 75190 to 75790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,008 DEBUG Processing 220/710 atomic regions from SNP 65875 to 66475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,026 DEBUG Processing 188/689 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,145 DEBUG Processing 434/825 atomic regions from SNP 130069 to 130669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,155 DEBUG Processing 252/725 atomic regions from SNP 75490 to 76090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,252 DEBUG Processing 221/710 atomic regions from SNP 66175 to 66775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,273 DEBUG Processing 189/689 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,386 DEBUG Processing 253/725 atomic regions from SNP 75790 to 76390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,394 DEBUG Processing 435/825 atomic regions from SNP 130369 to 130969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,493 DEBUG Processing 222/710 atomic regions from SNP 66475 to 67075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,535 DEBUG Processing 190/689 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,646 DEBUG Processing 254/725 atomic regions from SNP 76090 to 76690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,671 DEBUG Processing 436/825 atomic regions from SNP 130669 to 131269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,744 DEBUG Processing 223/710 atomic regions from SNP 66775 to 67375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,774 DEBUG Processing 191/689 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,894 DEBUG Processing 255/725 atomic regions from SNP 76390 to 76990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,941 DEBUG Processing 437/825 atomic regions from SNP 130969 to 131569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,973 DEBUG Processing 224/710 atomic regions from SNP 67075 to 67675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,006 DEBUG Processing 192/689 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,114 DEBUG Processing 256/725 atomic regions from SNP 76690 to 77290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,186 DEBUG Processing 438/825 atomic regions from SNP 131269 to 131869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,195 DEBUG Processing 225/710 atomic regions from SNP 67375 to 67975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,235 DEBUG Processing 193/689 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,331 DEBUG Processing 257/725 atomic regions from SNP 76990 to 77590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,408 DEBUG Processing 226/710 atomic regions from SNP 67675 to 68275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,422 DEBUG Processing 439/825 atomic regions from SNP 131569 to 132169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,470 DEBUG Processing 194/689 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,555 DEBUG Processing 258/725 atomic regions from SNP 77290 to 77890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,627 DEBUG Processing 227/710 atomic regions from SNP 67975 to 68575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,660 DEBUG Processing 440/825 atomic regions from SNP 131869 to 132469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,698 DEBUG Processing 195/689 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,772 DEBUG Processing 259/725 atomic regions from SNP 77590 to 78190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,842 DEBUG Processing 228/710 atomic regions from SNP 68275 to 68875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,892 DEBUG Processing 441/825 atomic regions from SNP 132169 to 132769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,929 DEBUG Processing 196/689 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,993 DEBUG Processing 260/725 atomic regions from SNP 77890 to 78490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,055 DEBUG Processing 229/710 atomic regions from SNP 68575 to 69175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,126 DEBUG Processing 442/825 atomic regions from SNP 132469 to 133069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,159 DEBUG Processing 197/689 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,213 DEBUG Processing 261/725 atomic regions from SNP 78190 to 78790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,275 DEBUG Processing 230/710 atomic regions from SNP 68875 to 69475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,385 DEBUG Processing 443/825 atomic regions from SNP 132769 to 133369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,385 DEBUG Processing 198/689 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,432 DEBUG Processing 262/725 atomic regions from SNP 78490 to 79090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,492 DEBUG Processing 231/710 atomic regions from SNP 69175 to 69775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,609 DEBUG Processing 199/689 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,645 DEBUG Processing 444/825 atomic regions from SNP 133069 to 133669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,646 DEBUG Processing 263/725 atomic regions from SNP 78790 to 79390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,708 DEBUG Processing 232/710 atomic regions from SNP 69475 to 70075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,836 DEBUG Processing 200/689 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,857 DEBUG Processing 264/725 atomic regions from SNP 79090 to 79690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,895 DEBUG Processing 445/825 atomic regions from SNP 133369 to 133969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,919 DEBUG Processing 233/710 atomic regions from SNP 69775 to 70375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,070 DEBUG Processing 201/689 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,072 DEBUG Processing 265/725 atomic regions from SNP 79390 to 79990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,126 DEBUG Processing 234/710 atomic regions from SNP 70075 to 70675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,143 DEBUG Processing 446/825 atomic regions from SNP 133669 to 134269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,287 DEBUG Processing 266/725 atomic regions from SNP 79690 to 80290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,301 DEBUG Processing 202/689 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,346 DEBUG Processing 235/710 atomic regions from SNP 70375 to 70975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,375 DEBUG Processing 447/825 atomic regions from SNP 133969 to 134569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,504 DEBUG Processing 267/725 atomic regions from SNP 79990 to 80590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,535 DEBUG Processing 203/689 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,574 DEBUG Processing 236/710 atomic regions from SNP 70675 to 71275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,607 DEBUG Processing 448/825 atomic regions from SNP 134269 to 134869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,717 DEBUG Processing 268/725 atomic regions from SNP 80290 to 80890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,760 DEBUG Processing 204/689 atomic regions from SNP 61103 to 61703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,788 DEBUG Processing 237/710 atomic regions from SNP 70975 to 71575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,846 DEBUG Processing 449/825 atomic regions from SNP 134569 to 135169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,935 DEBUG Processing 269/725 atomic regions from SNP 80590 to 81190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,980 DEBUG Processing 205/689 atomic regions from SNP 61403 to 62003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,999 DEBUG Processing 238/710 atomic regions from SNP 71275 to 71875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,086 DEBUG Processing 450/825 atomic regions from SNP 134869 to 135469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,152 DEBUG Processing 270/725 atomic regions from SNP 80890 to 81490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,202 DEBUG Processing 206/689 atomic regions from SNP 61703 to 62303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,219 DEBUG Processing 239/710 atomic regions from SNP 71575 to 72175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,316 DEBUG Processing 451/825 atomic regions from SNP 135169 to 135769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,365 DEBUG Processing 271/725 atomic regions from SNP 81190 to 81790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,432 DEBUG Processing 207/689 atomic regions from SNP 62003 to 62603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,434 DEBUG Processing 240/710 atomic regions from SNP 71875 to 72475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,554 DEBUG Processing 452/825 atomic regions from SNP 135469 to 136069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,585 DEBUG Processing 272/725 atomic regions from SNP 81490 to 82090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,648 DEBUG Processing 241/710 atomic regions from SNP 72175 to 72775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,656 DEBUG Processing 208/689 atomic regions from SNP 62303 to 62903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,784 DEBUG Processing 453/825 atomic regions from SNP 135769 to 136369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,806 DEBUG Processing 273/725 atomic regions from SNP 81790 to 82390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,856 DEBUG Processing 242/710 atomic regions from SNP 72475 to 73075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,871 DEBUG Processing 209/689 atomic regions from SNP 62603 to 63203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,977 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:46:45,011 DEBUG Processing 454/825 atomic regions from SNP 136069 to 136669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,017 DEBUG Processing 274/725 atomic regions from SNP 82090 to 82690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,068 DEBUG Processing 243/710 atomic regions from SNP 72775 to 73375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,109 DEBUG Processing 210/689 atomic regions from SNP 62903 to 63503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,230 DEBUG Processing 275/725 atomic regions from SNP 82390 to 82990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,240 DEBUG Processing 455/825 atomic regions from SNP 136369 to 136969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,284 DEBUG Processing 244/710 atomic regions from SNP 73075 to 73675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,356 DEBUG Processing 211/689 atomic regions from SNP 63203 to 63803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,438 DEBUG Processing 276/725 atomic regions from SNP 82690 to 83290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,468 DEBUG Processing 456/825 atomic regions from SNP 136669 to 137269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,492 DEBUG Processing 245/710 atomic regions from SNP 73375 to 73975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,580 DEBUG Processing 212/689 atomic regions from SNP 63503 to 64103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,655 DEBUG Processing 277/725 atomic regions from SNP 82990 to 83590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,697 DEBUG Processing 246/710 atomic regions from SNP 73675 to 74275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,713 DEBUG Processing 457/825 atomic regions from SNP 136969 to 137569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,805 DEBUG Processing 213/689 atomic regions from SNP 63803 to 64403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,876 DEBUG Processing 278/725 atomic regions from SNP 83290 to 83890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,912 DEBUG Processing 247/710 atomic regions from SNP 73975 to 74575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,975 DEBUG Processing 458/825 atomic regions from SNP 137269 to 137869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,024 DEBUG Processing 214/689 atomic regions from SNP 64103 to 64703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,095 DEBUG Processing 279/725 atomic regions from SNP 83590 to 84190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,127 DEBUG Processing 248/710 atomic regions from SNP 74275 to 74875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,216 DEBUG Processing 459/825 atomic regions from SNP 137569 to 138169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,248 DEBUG Processing 215/689 atomic regions from SNP 64403 to 65003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,315 DEBUG Processing 280/725 atomic regions from SNP 83890 to 84490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,348 DEBUG Processing 249/710 atomic regions from SNP 74575 to 75175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,453 DEBUG Processing 460/825 atomic regions from SNP 137869 to 138469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,474 DEBUG Processing 216/689 atomic regions from SNP 64703 to 65303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,525 DEBUG Processing 281/725 atomic regions from SNP 84190 to 84790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,562 DEBUG Processing 250/710 atomic regions from SNP 74875 to 75475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,707 DEBUG Processing 217/689 atomic regions from SNP 65003 to 65603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,716 DEBUG Processing 461/825 atomic regions from SNP 138169 to 138769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,737 DEBUG Processing 282/725 atomic regions from SNP 84490 to 85090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,774 DEBUG Processing 251/710 atomic regions from SNP 75175 to 75775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,938 DEBUG Processing 218/689 atomic regions from SNP 65303 to 65903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,956 DEBUG Processing 462/825 atomic regions from SNP 138469 to 139069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,956 DEBUG Processing 283/725 atomic regions from SNP 84790 to 85390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,990 DEBUG Processing 252/710 atomic regions from SNP 75475 to 76075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,165 DEBUG Processing 219/689 atomic regions from SNP 65603 to 66203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,179 DEBUG Processing 284/725 atomic regions from SNP 85090 to 85690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,208 DEBUG Processing 253/710 atomic regions from SNP 75775 to 76375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,209 DEBUG Processing 463/825 atomic regions from SNP 138769 to 139369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,385 DEBUG Processing 220/689 atomic regions from SNP 65903 to 66503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,399 DEBUG Processing 285/725 atomic regions from SNP 85390 to 85990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,424 DEBUG Processing 254/710 atomic regions from SNP 76075 to 76675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,477 DEBUG Processing 464/825 atomic regions from SNP 139069 to 139669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,613 DEBUG Processing 221/689 atomic regions from SNP 66203 to 66803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,623 DEBUG Processing 286/725 atomic regions from SNP 85690 to 86290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,641 DEBUG Processing 255/710 atomic regions from SNP 76375 to 76975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,734 DEBUG Processing 465/825 atomic regions from SNP 139369 to 139969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,854 DEBUG Processing 222/689 atomic regions from SNP 66503 to 67103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,866 DEBUG Processing 256/710 atomic regions from SNP 76675 to 77275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,867 DEBUG Processing 287/725 atomic regions from SNP 85990 to 86590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,983 DEBUG Processing 466/825 atomic regions from SNP 139669 to 140269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,106 DEBUG Processing 257/710 atomic regions from SNP 76975 to 77575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,108 DEBUG Processing 288/725 atomic regions from SNP 86290 to 86890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,109 DEBUG Processing 223/689 atomic regions from SNP 66803 to 67403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,238 DEBUG Processing 467/825 atomic regions from SNP 139969 to 140569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,336 DEBUG Processing 289/725 atomic regions from SNP 86590 to 87190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,337 DEBUG Processing 258/710 atomic regions from SNP 77275 to 77875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,346 DEBUG Processing 224/689 atomic regions from SNP 67103 to 67703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,482 DEBUG Processing 468/825 atomic regions from SNP 140269 to 140869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,560 DEBUG Processing 259/710 atomic regions from SNP 77575 to 78175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,561 DEBUG Processing 290/725 atomic regions from SNP 86890 to 87490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,572 DEBUG Processing 225/689 atomic regions from SNP 67403 to 68003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,721 DEBUG Processing 469/825 atomic regions from SNP 140569 to 141169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,792 DEBUG Processing 260/710 atomic regions from SNP 77875 to 78475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,797 DEBUG Processing 226/689 atomic regions from SNP 67703 to 68303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,798 DEBUG Processing 291/725 atomic regions from SNP 87190 to 87790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,960 DEBUG Processing 470/825 atomic regions from SNP 140869 to 141469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,012 DEBUG Processing 261/710 atomic regions from SNP 78175 to 78775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,023 DEBUG Processing 292/725 atomic regions from SNP 87490 to 88090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,026 DEBUG Processing 227/689 atomic regions from SNP 68003 to 68603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,202 DEBUG Processing 471/825 atomic regions from SNP 141169 to 141769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,226 DEBUG Processing 262/710 atomic regions from SNP 78475 to 79075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,245 DEBUG Processing 293/725 atomic regions from SNP 87790 to 88390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,263 DEBUG Processing 228/689 atomic regions from SNP 68303 to 68903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,430 DEBUG Processing 263/710 atomic regions from SNP 78775 to 79375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,454 DEBUG Processing 294/725 atomic regions from SNP 88090 to 88690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,470 DEBUG Processing 472/825 atomic regions from SNP 141469 to 142069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,497 DEBUG Processing 229/689 atomic regions from SNP 68603 to 69203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,643 DEBUG Processing 264/710 atomic regions from SNP 79075 to 79675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,666 DEBUG Processing 295/725 atomic regions from SNP 88390 to 88990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,726 DEBUG Processing 230/689 atomic regions from SNP 68903 to 69503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,737 DEBUG Processing 473/825 atomic regions from SNP 141769 to 142369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,865 DEBUG Processing 265/710 atomic regions from SNP 79375 to 79975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,886 DEBUG Processing 296/725 atomic regions from SNP 88690 to 89290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,957 DEBUG Processing 231/689 atomic regions from SNP 69203 to 69803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,986 DEBUG Processing 474/825 atomic regions from SNP 142069 to 142669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,085 DEBUG Processing 266/710 atomic regions from SNP 79675 to 80275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,110 DEBUG Processing 297/725 atomic regions from SNP 88990 to 89590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,193 DEBUG Processing 232/689 atomic regions from SNP 69503 to 70103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,239 DEBUG Processing 475/825 atomic regions from SNP 142369 to 142969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,294 DEBUG Processing 267/710 atomic regions from SNP 79975 to 80575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,325 DEBUG Processing 298/725 atomic regions from SNP 89290 to 89890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,418 DEBUG Processing 233/689 atomic regions from SNP 69803 to 70403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,474 DEBUG Processing 476/825 atomic regions from SNP 142669 to 143269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,501 DEBUG Processing 268/710 atomic regions from SNP 80275 to 80875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,534 DEBUG Processing 299/725 atomic regions from SNP 89590 to 90190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,638 DEBUG Processing 234/689 atomic regions from SNP 70103 to 70703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,714 DEBUG Processing 269/710 atomic regions from SNP 80575 to 81175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,715 DEBUG Processing 477/825 atomic regions from SNP 142969 to 143569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,750 DEBUG Processing 300/725 atomic regions from SNP 89890 to 90490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,864 DEBUG Processing 235/689 atomic regions from SNP 70403 to 71003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,934 DEBUG Processing 270/710 atomic regions from SNP 80875 to 81475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,963 DEBUG Processing 478/825 atomic regions from SNP 143269 to 143869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,973 DEBUG Processing 301/725 atomic regions from SNP 90190 to 90790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,094 DEBUG Processing 236/689 atomic regions from SNP 70703 to 71303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,152 DEBUG Processing 271/710 atomic regions from SNP 81175 to 81775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,200 DEBUG Processing 302/725 atomic regions from SNP 90490 to 91090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,231 DEBUG Processing 479/825 atomic regions from SNP 143569 to 144169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,315 DEBUG Processing 237/689 atomic regions from SNP 71003 to 71603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,370 DEBUG Processing 272/710 atomic regions from SNP 81475 to 82075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,422 DEBUG Processing 303/725 atomic regions from SNP 90790 to 91390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,483 DEBUG Processing 480/825 atomic regions from SNP 143869 to 144469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,535 DEBUG Processing 238/689 atomic regions from SNP 71303 to 71903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,580 DEBUG Processing 273/710 atomic regions from SNP 81775 to 82375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,640 DEBUG Processing 304/725 atomic regions from SNP 91090 to 91690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,722 DEBUG Processing 481/825 atomic regions from SNP 144169 to 144769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,761 DEBUG Processing 239/689 atomic regions from SNP 71603 to 72203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,795 DEBUG Processing 274/710 atomic regions from SNP 82075 to 82675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,856 DEBUG Processing 305/725 atomic regions from SNP 91390 to 91990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,969 DEBUG Processing 482/825 atomic regions from SNP 144469 to 145069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,993 DEBUG Processing 240/689 atomic regions from SNP 71903 to 72503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,019 DEBUG Processing 275/710 atomic regions from SNP 82375 to 82975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,075 DEBUG Processing 306/725 atomic regions from SNP 91690 to 92290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,215 DEBUG Processing 483/825 atomic regions from SNP 144769 to 145369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,225 DEBUG Processing 241/689 atomic regions from SNP 72203 to 72803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,243 DEBUG Processing 276/710 atomic regions from SNP 82675 to 83275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,298 DEBUG Processing 307/725 atomic regions from SNP 91990 to 92590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,452 DEBUG Processing 242/689 atomic regions from SNP 72503 to 73103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,455 DEBUG Processing 484/825 atomic regions from SNP 145069 to 145669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,462 DEBUG Processing 277/710 atomic regions from SNP 82975 to 83575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,522 DEBUG Processing 308/725 atomic regions from SNP 92290 to 92890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,678 DEBUG Processing 278/710 atomic regions from SNP 83275 to 83875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,683 DEBUG Processing 243/689 atomic regions from SNP 72803 to 73403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,695 DEBUG Processing 485/825 atomic regions from SNP 145369 to 145969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,746 DEBUG Processing 309/725 atomic regions from SNP 92590 to 93190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,890 DEBUG Processing 279/710 atomic regions from SNP 83575 to 84175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,914 DEBUG Processing 244/689 atomic regions from SNP 73103 to 73703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,940 DEBUG Processing 486/825 atomic regions from SNP 145669 to 146269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,965 DEBUG Processing 310/725 atomic regions from SNP 92890 to 93490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,104 DEBUG Processing 280/710 atomic regions from SNP 83875 to 84475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,140 DEBUG Processing 245/689 atomic regions from SNP 73403 to 74003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,174 DEBUG Processing 487/825 atomic regions from SNP 145969 to 146569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,185 DEBUG Processing 311/725 atomic regions from SNP 93190 to 93790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,325 DEBUG Processing 281/710 atomic regions from SNP 84175 to 84775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,368 DEBUG Processing 246/689 atomic regions from SNP 73703 to 74303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,409 DEBUG Processing 312/725 atomic regions from SNP 93490 to 94090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,411 DEBUG Processing 488/825 atomic regions from SNP 146269 to 146869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,542 DEBUG Processing 282/710 atomic regions from SNP 84475 to 85075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,596 DEBUG Processing 247/689 atomic regions from SNP 74003 to 74603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,625 DEBUG Processing 313/725 atomic regions from SNP 93790 to 94390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,664 DEBUG Processing 489/825 atomic regions from SNP 146569 to 147169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,751 DEBUG Processing 283/710 atomic regions from SNP 84775 to 85375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,820 DEBUG Processing 248/689 atomic regions from SNP 74303 to 74903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,846 DEBUG Processing 314/725 atomic regions from SNP 94090 to 94690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,918 DEBUG Processing 490/825 atomic regions from SNP 146869 to 147469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,964 DEBUG Processing 284/710 atomic regions from SNP 85075 to 85675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,034 DEBUG Processing 249/689 atomic regions from SNP 74603 to 75203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,065 DEBUG Processing 315/725 atomic regions from SNP 94390 to 94990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,157 DEBUG Processing 491/825 atomic regions from SNP 147169 to 147769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,175 DEBUG Processing 285/710 atomic regions from SNP 85375 to 85975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,251 DEBUG Processing 250/689 atomic regions from SNP 74903 to 75503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,280 DEBUG Processing 316/725 atomic regions from SNP 94690 to 95290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,387 DEBUG Processing 286/710 atomic regions from SNP 85675 to 86275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,406 DEBUG Processing 492/825 atomic regions from SNP 147469 to 148069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,476 DEBUG Processing 251/689 atomic regions from SNP 75203 to 75803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,495 DEBUG Processing 317/725 atomic regions from SNP 94990 to 95590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,599 DEBUG Processing 287/710 atomic regions from SNP 85975 to 86575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,649 DEBUG Processing 493/825 atomic regions from SNP 147769 to 148369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,707 DEBUG Processing 252/689 atomic regions from SNP 75503 to 76103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,732 DEBUG Processing 318/725 atomic regions from SNP 95290 to 95890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,817 DEBUG Processing 288/710 atomic regions from SNP 86275 to 86875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,876 DEBUG Processing 494/825 atomic regions from SNP 148069 to 148669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,927 DEBUG Processing 253/689 atomic regions from SNP 75803 to 76403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,963 DEBUG Processing 319/725 atomic regions from SNP 95590 to 96190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,044 DEBUG Processing 289/710 atomic regions from SNP 86575 to 87175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,116 DEBUG Processing 495/825 atomic regions from SNP 148369 to 148969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,153 DEBUG Processing 254/689 atomic regions from SNP 76103 to 76703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,178 DEBUG Processing 320/725 atomic regions from SNP 95890 to 96490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,248 DEBUG Processing 290/710 atomic regions from SNP 86875 to 87475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,365 DEBUG Processing 496/825 atomic regions from SNP 148669 to 149269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,386 DEBUG Processing 255/689 atomic regions from SNP 76403 to 77003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,401 DEBUG Processing 321/725 atomic regions from SNP 96190 to 96790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,454 DEBUG Processing 291/710 atomic regions from SNP 87175 to 87775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,604 DEBUG Processing 497/825 atomic regions from SNP 148969 to 149569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,615 DEBUG Processing 256/689 atomic regions from SNP 76703 to 77303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,618 DEBUG Processing 322/725 atomic regions from SNP 96490 to 97090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,666 DEBUG Processing 292/710 atomic regions from SNP 87475 to 88075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,831 DEBUG Processing 323/725 atomic regions from SNP 96790 to 97390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,843 DEBUG Processing 257/689 atomic regions from SNP 77003 to 77603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,855 DEBUG Processing 498/825 atomic regions from SNP 149269 to 149869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,894 DEBUG Processing 293/710 atomic regions from SNP 87775 to 88375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,049 DEBUG Processing 324/725 atomic regions from SNP 97090 to 97690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,070 DEBUG Processing 258/689 atomic regions from SNP 77303 to 77903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,094 DEBUG Processing 499/825 atomic regions from SNP 149569 to 150169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,135 DEBUG Processing 294/710 atomic regions from SNP 88075 to 88675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,259 DEBUG Processing 325/725 atomic regions from SNP 97390 to 97990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,285 DEBUG Processing 259/689 atomic regions from SNP 77603 to 78203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,322 DEBUG Processing 500/825 atomic regions from SNP 149869 to 150469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,344 DEBUG Processing 295/710 atomic regions from SNP 88375 to 88975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,472 DEBUG Processing 326/725 atomic regions from SNP 97690 to 98290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,513 DEBUG Processing 260/689 atomic regions from SNP 77903 to 78503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,558 DEBUG Processing 501/825 atomic regions from SNP 150169 to 150769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,559 DEBUG Processing 296/710 atomic regions from SNP 88675 to 89275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,682 DEBUG Processing 327/725 atomic regions from SNP 97990 to 98590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,738 DEBUG Processing 261/689 atomic regions from SNP 78203 to 78803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,773 DEBUG Processing 297/710 atomic regions from SNP 88975 to 89575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,792 DEBUG Processing 502/825 atomic regions from SNP 150469 to 151069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,916 DEBUG Processing 328/725 atomic regions from SNP 98290 to 98890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,967 DEBUG Processing 262/689 atomic regions from SNP 78503 to 79103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,983 DEBUG Processing 298/710 atomic regions from SNP 89275 to 89875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,026 DEBUG Processing 503/825 atomic regions from SNP 150769 to 151369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,144 DEBUG Processing 329/725 atomic regions from SNP 98590 to 99190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,193 DEBUG Processing 299/710 atomic regions from SNP 89575 to 90175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,202 DEBUG Processing 263/689 atomic regions from SNP 78803 to 79403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,260 DEBUG Processing 504/825 atomic regions from SNP 151069 to 151669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,377 DEBUG Processing 330/725 atomic regions from SNP 98890 to 99490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,420 DEBUG Processing 300/710 atomic regions from SNP 89875 to 90475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,444 DEBUG Processing 264/689 atomic regions from SNP 79103 to 79703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,510 DEBUG Processing 505/825 atomic regions from SNP 151369 to 151969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,526 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:46:57,528 DEBUG chr14: Signal quantile: 0.995. signal threshold: 11. Best RMSEA: 0.040 2025-01-31 09:46:57,627 DEBUG Processing 331/725 atomic regions from SNP 99190 to 99790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,656 DEBUG Processing 301/710 atomic regions from SNP 90175 to 90775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,690 DEBUG Processing 265/689 atomic regions from SNP 79403 to 80003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,751 DEBUG Processing 506/825 atomic regions from SNP 151669 to 152269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,846 DEBUG Processing 332/725 atomic regions from SNP 99490 to 100090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,879 DEBUG Processing 302/710 atomic regions from SNP 90475 to 91075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,925 DEBUG Processing 266/689 atomic regions from SNP 79703 to 80303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,990 DEBUG Processing 507/825 atomic regions from SNP 151969 to 152569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,079 DEBUG Processing 333/725 atomic regions from SNP 99790 to 100390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,092 DEBUG Processing 303/710 atomic regions from SNP 90775 to 91375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,167 DEBUG Processing 267/689 atomic regions from SNP 80003 to 80603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,232 DEBUG Processing 508/825 atomic regions from SNP 152269 to 152869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,303 DEBUG Processing 304/710 atomic regions from SNP 91075 to 91675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,318 DEBUG Processing 334/725 atomic regions from SNP 100090 to 100690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,428 DEBUG Processing 268/689 atomic regions from SNP 80303 to 80903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,470 DEBUG Processing 509/825 atomic regions from SNP 152569 to 153169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,519 DEBUG Processing 305/710 atomic regions from SNP 91375 to 91975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,550 DEBUG Processing 335/725 atomic regions from SNP 100390 to 100990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,660 DEBUG Processing 269/689 atomic regions from SNP 80603 to 81203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,710 DEBUG Processing 510/825 atomic regions from SNP 152869 to 153469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,745 DEBUG Processing 306/710 atomic regions from SNP 91675 to 92275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,802 DEBUG Processing 336/725 atomic regions from SNP 100690 to 101290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,890 DEBUG Processing 270/689 atomic regions from SNP 80903 to 81503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,955 DEBUG Processing 511/825 atomic regions from SNP 153169 to 153769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,974 DEBUG Processing 307/710 atomic regions from SNP 91975 to 92575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,035 DEBUG Processing 337/725 atomic regions from SNP 100990 to 101590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,118 DEBUG Processing 271/689 atomic regions from SNP 81203 to 81803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,194 DEBUG Processing 308/710 atomic regions from SNP 92275 to 92875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,197 DEBUG Processing 512/825 atomic regions from SNP 153469 to 154069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,265 DEBUG Processing 338/725 atomic regions from SNP 101290 to 101890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,336 DEBUG Processing 272/689 atomic regions from SNP 81503 to 82103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,405 DEBUG Processing 309/710 atomic regions from SNP 92575 to 93175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,433 DEBUG Processing 513/825 atomic regions from SNP 153769 to 154369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,486 DEBUG Processing 339/725 atomic regions from SNP 101590 to 102190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,553 DEBUG Processing 273/689 atomic regions from SNP 81803 to 82403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,619 DEBUG Processing 310/710 atomic regions from SNP 92875 to 93475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,664 DEBUG Processing 514/825 atomic regions from SNP 154069 to 154669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,715 DEBUG Processing 340/725 atomic regions from SNP 101890 to 102490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,775 DEBUG Processing 274/689 atomic regions from SNP 82103 to 82703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,841 DEBUG chr14 total SNP count: 191811 2025-01-31 09:46:59,842 DEBUG chr14 length: 124902244 2025-01-31 09:46:59,842 DEBUG ----------------------------------------- 2025-01-31 09:46:59,842 INFO Processing SNPs in chr14 2025-01-31 09:46:59,852 DEBUG Processing 311/710 atomic regions from SNP 93175 to 93775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,909 DEBUG Processing 515/825 atomic regions from SNP 154369 to 154969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,958 DEBUG Processing 341/725 atomic regions from SNP 102190 to 102790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,996 DEBUG Processing 275/689 atomic regions from SNP 82403 to 83003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,064 DEBUG Processing 312/710 atomic regions from SNP 93475 to 94075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,138 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 138), (138, 191811)] 2025-01-31 09:47:00,141 DEBUG Processing 516/825 atomic regions from SNP 154669 to 155269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,178 DEBUG Processing 342/725 atomic regions from SNP 102490 to 103090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,221 DEBUG Processing 276/689 atomic regions from SNP 82703 to 83303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,222 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:00,240 DEBUG Segmenting atomic regions: 2025-01-31 09:47:00,268 DEBUG Processing 313/710 atomic regions from SNP 93775 to 94375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,322 DEBUG Processing 1/1 atomic regions from SNP 0 to 137 for chr14 (subchromosome 1 of 2). 2025-01-31 09:47:00,328 DEBUG Unique SNPs positions in subchromosome 1: 138 2025-01-31 09:47:00,329 DEBUG Subchromosome time: 0.10663127596490085, subchromosome SNPs: 138 2025-01-31 09:47:00,375 DEBUG Processing 517/825 atomic regions from SNP 154969 to 155569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,376 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:00,400 DEBUG Processing 343/725 atomic regions from SNP 102790 to 103390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,448 DEBUG Processing 277/689 atomic regions from SNP 83003 to 83603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,472 DEBUG Processing 314/710 atomic regions from SNP 94075 to 94675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,605 DEBUG Processing 518/825 atomic regions from SNP 155269 to 155869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,623 DEBUG Processing 344/725 atomic regions from SNP 103090 to 103690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,675 DEBUG Processing 278/689 atomic regions from SNP 83303 to 83903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,690 DEBUG Processing 315/710 atomic regions from SNP 94375 to 94975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,833 DEBUG Processing 519/825 atomic regions from SNP 155569 to 156169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,838 DEBUG Processing 345/725 atomic regions from SNP 103390 to 103990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,903 DEBUG Processing 279/689 atomic regions from SNP 83603 to 84203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,913 DEBUG Processing 316/710 atomic regions from SNP 94675 to 95275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,046 DEBUG Processing 346/725 atomic regions from SNP 103690 to 104290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,058 DEBUG Processing 520/825 atomic regions from SNP 155869 to 156469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,123 DEBUG Processing 280/689 atomic regions from SNP 83903 to 84503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,125 DEBUG Processing 317/710 atomic regions from SNP 94975 to 95575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,258 DEBUG Processing 347/725 atomic regions from SNP 103990 to 104590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,287 DEBUG Processing 521/825 atomic regions from SNP 156169 to 156769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,327 DEBUG Processing 318/710 atomic regions from SNP 95275 to 95875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,333 DEBUG Processing 281/689 atomic regions from SNP 84203 to 84803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,499 DEBUG Processing 348/725 atomic regions from SNP 104290 to 104890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,526 DEBUG Processing 522/825 atomic regions from SNP 156469 to 157069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,536 DEBUG Processing 319/710 atomic regions from SNP 95575 to 96175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,550 DEBUG Processing 282/689 atomic regions from SNP 84503 to 85103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,724 DEBUG Processing 349/725 atomic regions from SNP 104590 to 105190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,756 DEBUG Processing 320/710 atomic regions from SNP 95875 to 96475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,767 DEBUG Processing 523/825 atomic regions from SNP 156769 to 157369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,777 DEBUG Processing 283/689 atomic regions from SNP 84803 to 85403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,945 DEBUG Processing 350/725 atomic regions from SNP 104890 to 105490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,976 DEBUG Processing 321/710 atomic regions from SNP 96175 to 96775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,004 DEBUG Processing 524/825 atomic regions from SNP 157069 to 157669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,006 DEBUG Processing 284/689 atomic regions from SNP 85103 to 85703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,163 DEBUG Processing 351/725 atomic regions from SNP 105190 to 105790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,194 DEBUG Processing 322/710 atomic regions from SNP 96475 to 97075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,233 DEBUG Processing 285/689 atomic regions from SNP 85403 to 86003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,240 DEBUG Processing 525/825 atomic regions from SNP 157369 to 157969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,376 DEBUG Processing 352/725 atomic regions from SNP 105490 to 106090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,411 DEBUG Processing 323/710 atomic regions from SNP 96775 to 97375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,464 DEBUG Processing 286/689 atomic regions from SNP 85703 to 86303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,479 DEBUG Processing 526/825 atomic regions from SNP 157669 to 158269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,589 DEBUG Processing 353/725 atomic regions from SNP 105790 to 106390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,623 DEBUG Processing 324/710 atomic regions from SNP 97075 to 97675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,694 DEBUG Processing 287/689 atomic regions from SNP 86003 to 86603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,722 DEBUG Processing 527/825 atomic regions from SNP 157969 to 158569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,802 DEBUG Processing 354/725 atomic regions from SNP 106090 to 106690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,831 DEBUG Processing 325/710 atomic regions from SNP 97375 to 97975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,917 DEBUG Processing 288/689 atomic regions from SNP 86303 to 86903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,959 DEBUG Processing 528/825 atomic regions from SNP 158269 to 158869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,017 DEBUG Processing 355/725 atomic regions from SNP 106390 to 106990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,043 DEBUG Processing 326/710 atomic regions from SNP 97675 to 98275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,131 DEBUG Processing 289/689 atomic regions from SNP 86603 to 87203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,198 DEBUG Processing 529/825 atomic regions from SNP 158569 to 159169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,232 DEBUG Processing 356/725 atomic regions from SNP 106690 to 107290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,253 DEBUG Processing 327/710 atomic regions from SNP 97975 to 98575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,349 DEBUG Processing 290/689 atomic regions from SNP 86903 to 87503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,429 DEBUG Processing 530/825 atomic regions from SNP 158869 to 159469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,442 DEBUG Processing 357/725 atomic regions from SNP 106990 to 107590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,461 DEBUG Processing 328/710 atomic regions from SNP 98275 to 98875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,570 DEBUG Processing 291/689 atomic regions from SNP 87203 to 87803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,657 DEBUG Processing 531/825 atomic regions from SNP 159169 to 159769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,658 DEBUG Processing 358/725 atomic regions from SNP 107290 to 107890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,672 DEBUG Processing 329/710 atomic regions from SNP 98575 to 99175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,789 DEBUG Processing 292/689 atomic regions from SNP 87503 to 88103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,875 DEBUG Processing 359/725 atomic regions from SNP 107590 to 108190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,887 DEBUG Processing 330/710 atomic regions from SNP 98875 to 99475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,887 DEBUG Processing 532/825 atomic regions from SNP 159469 to 160069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,011 DEBUG Processing 293/689 atomic regions from SNP 87803 to 88403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,092 DEBUG Processing 360/725 atomic regions from SNP 107890 to 108490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,099 DEBUG Processing 331/710 atomic regions from SNP 99175 to 99775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,123 DEBUG Processing 533/825 atomic regions from SNP 159769 to 160369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,232 DEBUG Processing 294/689 atomic regions from SNP 88103 to 88703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,313 DEBUG Processing 361/725 atomic regions from SNP 108190 to 108790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,317 DEBUG Processing 332/710 atomic regions from SNP 99475 to 100075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,358 DEBUG Processing 534/825 atomic regions from SNP 160069 to 160669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,447 DEBUG Processing 295/689 atomic regions from SNP 88403 to 89003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,531 DEBUG Processing 362/725 atomic regions from SNP 108490 to 109090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,534 DEBUG Processing 333/710 atomic regions from SNP 99775 to 100375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,597 DEBUG Processing 535/825 atomic regions from SNP 160369 to 160969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,662 DEBUG Processing 296/689 atomic regions from SNP 88703 to 89303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,753 DEBUG Processing 363/725 atomic regions from SNP 108790 to 109390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,755 DEBUG Processing 334/710 atomic regions from SNP 100075 to 100675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,842 DEBUG Processing 536/825 atomic regions from SNP 160669 to 161269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,889 DEBUG Processing 297/689 atomic regions from SNP 89003 to 89603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,964 DEBUG Processing 335/710 atomic regions from SNP 100375 to 100975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,965 DEBUG Processing 364/725 atomic regions from SNP 109090 to 109690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,086 DEBUG Processing 537/825 atomic regions from SNP 160969 to 161569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,131 DEBUG Processing 298/689 atomic regions from SNP 89303 to 89903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,175 DEBUG Processing 336/710 atomic regions from SNP 100675 to 101275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,178 DEBUG Processing 365/725 atomic regions from SNP 109390 to 109990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,311 DEBUG Processing 538/825 atomic regions from SNP 161269 to 161869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,361 DEBUG Processing 299/689 atomic regions from SNP 89603 to 90203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,398 DEBUG Processing 337/710 atomic regions from SNP 100975 to 101575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,405 DEBUG Processing 366/725 atomic regions from SNP 109690 to 110290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,539 DEBUG Processing 539/825 atomic regions from SNP 161569 to 162169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,581 DEBUG Processing 300/689 atomic regions from SNP 89903 to 90503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,616 DEBUG Processing 338/710 atomic regions from SNP 101275 to 101875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,627 DEBUG Processing 367/725 atomic regions from SNP 109990 to 110590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,776 DEBUG Processing 540/825 atomic regions from SNP 161869 to 162469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,807 DEBUG Processing 301/689 atomic regions from SNP 90203 to 90803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,831 DEBUG Processing 339/710 atomic regions from SNP 101575 to 102175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,847 DEBUG Processing 368/725 atomic regions from SNP 110290 to 110890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,013 DEBUG Processing 541/825 atomic regions from SNP 162169 to 162769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,038 DEBUG Processing 302/689 atomic regions from SNP 90503 to 91103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,042 DEBUG Processing 340/710 atomic regions from SNP 101875 to 102475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,059 DEBUG Processing 369/725 atomic regions from SNP 110590 to 111190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,253 DEBUG Processing 542/825 atomic regions from SNP 162469 to 163069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,256 DEBUG Processing 341/710 atomic regions from SNP 102175 to 102775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,268 DEBUG Processing 303/689 atomic regions from SNP 90803 to 91403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,277 DEBUG Processing 370/725 atomic regions from SNP 110890 to 111490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,462 DEBUG Processing 342/710 atomic regions from SNP 102475 to 103075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,489 DEBUG Processing 371/725 atomic regions from SNP 111190 to 111790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,490 DEBUG Processing 543/825 atomic regions from SNP 162769 to 163369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,499 DEBUG Processing 304/689 atomic regions from SNP 91103 to 91703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,671 DEBUG Processing 343/710 atomic regions from SNP 102775 to 103375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,701 DEBUG Processing 372/725 atomic regions from SNP 111490 to 112090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,728 DEBUG Processing 544/825 atomic regions from SNP 163069 to 163669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,731 DEBUG Processing 305/689 atomic regions from SNP 91403 to 92003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,881 DEBUG Processing 344/710 atomic regions from SNP 103075 to 103675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,911 DEBUG Processing 373/725 atomic regions from SNP 111790 to 112390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,962 DEBUG Processing 545/825 atomic regions from SNP 163369 to 163969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,970 DEBUG Processing 306/689 atomic regions from SNP 91703 to 92303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,096 DEBUG Processing 345/710 atomic regions from SNP 103375 to 103975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,130 DEBUG Processing 374/725 atomic regions from SNP 112090 to 112690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,193 DEBUG Processing 546/825 atomic regions from SNP 163669 to 164269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,226 DEBUG Processing 307/689 atomic regions from SNP 92003 to 92603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,306 DEBUG Processing 346/710 atomic regions from SNP 103675 to 104275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,345 DEBUG Processing 375/725 atomic regions from SNP 112390 to 112990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,426 DEBUG Processing 547/825 atomic regions from SNP 163969 to 164569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,480 DEBUG Processing 308/689 atomic regions from SNP 92303 to 92903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,507 DEBUG Processing 347/710 atomic regions from SNP 103975 to 104575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,555 DEBUG Processing 376/725 atomic regions from SNP 112690 to 113290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,657 DEBUG Processing 548/825 atomic regions from SNP 164269 to 164869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,707 DEBUG Processing 309/689 atomic regions from SNP 92603 to 93203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,711 DEBUG Processing 348/710 atomic regions from SNP 104275 to 104875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,763 DEBUG Processing 377/725 atomic regions from SNP 112990 to 113590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,894 DEBUG Processing 549/825 atomic regions from SNP 164569 to 165169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,921 DEBUG Processing 349/710 atomic regions from SNP 104575 to 105175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,937 DEBUG Processing 310/689 atomic regions from SNP 92903 to 93503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,972 DEBUG Processing 378/725 atomic regions from SNP 113290 to 113890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,133 DEBUG Processing 350/710 atomic regions from SNP 104875 to 105475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,134 DEBUG Processing 550/825 atomic regions from SNP 164869 to 165469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,175 DEBUG Processing 311/689 atomic regions from SNP 93203 to 93803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,187 DEBUG Processing 379/725 atomic regions from SNP 113590 to 114190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,353 DEBUG Processing 351/710 atomic regions from SNP 105175 to 105775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,380 DEBUG Processing 551/825 atomic regions from SNP 165169 to 165769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,410 DEBUG Processing 380/725 atomic regions from SNP 113890 to 114490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,426 DEBUG Processing 312/689 atomic regions from SNP 93503 to 94103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,569 DEBUG Processing 352/710 atomic regions from SNP 105475 to 106075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,614 DEBUG Processing 552/825 atomic regions from SNP 165469 to 166069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,632 DEBUG Processing 381/725 atomic regions from SNP 114190 to 114790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,659 DEBUG Processing 313/689 atomic regions from SNP 93803 to 94403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,783 DEBUG Processing 353/710 atomic regions from SNP 105775 to 106375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,850 DEBUG Processing 553/825 atomic regions from SNP 165769 to 166369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,860 DEBUG Processing 382/725 atomic regions from SNP 114490 to 115090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,885 DEBUG Processing 314/689 atomic regions from SNP 94103 to 94703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,992 DEBUG Processing 354/710 atomic regions from SNP 106075 to 106675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,072 DEBUG Processing 383/725 atomic regions from SNP 114790 to 115390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,083 DEBUG Processing 554/825 atomic regions from SNP 166069 to 166669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,112 DEBUG Processing 315/689 atomic regions from SNP 94403 to 95003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,202 DEBUG Processing 355/710 atomic regions from SNP 106375 to 106975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,279 DEBUG Processing 384/725 atomic regions from SNP 115090 to 115690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,313 DEBUG Processing 555/825 atomic regions from SNP 166369 to 166969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,339 DEBUG Processing 316/689 atomic regions from SNP 94703 to 95303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,425 DEBUG Processing 356/710 atomic regions from SNP 106675 to 107275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,492 DEBUG Processing 385/725 atomic regions from SNP 115390 to 115990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,541 DEBUG Processing 556/825 atomic regions from SNP 166669 to 167269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,559 DEBUG Processing 317/689 atomic regions from SNP 95003 to 95603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,646 DEBUG Processing 357/710 atomic regions from SNP 106975 to 107575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,740 DEBUG Processing 386/725 atomic regions from SNP 115690 to 116290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,776 DEBUG Processing 557/825 atomic regions from SNP 166969 to 167569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,780 DEBUG Processing 318/689 atomic regions from SNP 95303 to 95903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,859 DEBUG Processing 358/710 atomic regions from SNP 107275 to 107875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,971 DEBUG Processing 387/725 atomic regions from SNP 115990 to 116590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,014 DEBUG Processing 319/689 atomic regions from SNP 95603 to 96203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,018 DEBUG Processing 558/825 atomic regions from SNP 167269 to 167869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,073 DEBUG Processing 359/710 atomic regions from SNP 107575 to 108175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,187 DEBUG Processing 388/725 atomic regions from SNP 116290 to 116890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,249 DEBUG Processing 320/689 atomic regions from SNP 95903 to 96503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,259 DEBUG Processing 559/825 atomic regions from SNP 167569 to 168169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,308 DEBUG Processing 360/710 atomic regions from SNP 107875 to 108475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,405 DEBUG Processing 389/725 atomic regions from SNP 116590 to 117190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,472 DEBUG Processing 321/689 atomic regions from SNP 96203 to 96803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,493 DEBUG Processing 560/825 atomic regions from SNP 167869 to 168469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,538 DEBUG Processing 361/710 atomic regions from SNP 108175 to 108775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,625 DEBUG Processing 390/725 atomic regions from SNP 116890 to 117490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,686 DEBUG Processing 322/689 atomic regions from SNP 96503 to 97103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,720 DEBUG Processing 561/825 atomic regions from SNP 168169 to 168769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,782 DEBUG Processing 362/710 atomic regions from SNP 108475 to 109075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,853 DEBUG Processing 391/725 atomic regions from SNP 117190 to 117790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,908 DEBUG Processing 323/689 atomic regions from SNP 96803 to 97403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,948 DEBUG Processing 562/825 atomic regions from SNP 168469 to 169069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,025 DEBUG Processing 363/710 atomic regions from SNP 108775 to 109375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,079 DEBUG Processing 392/725 atomic regions from SNP 117490 to 118090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,140 DEBUG Processing 324/689 atomic regions from SNP 97103 to 97703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,186 DEBUG Processing 563/825 atomic regions from SNP 168769 to 169369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,273 DEBUG Processing 364/710 atomic regions from SNP 109075 to 109675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,297 DEBUG Processing 393/725 atomic regions from SNP 117790 to 118390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,361 DEBUG Processing 325/689 atomic regions from SNP 97403 to 98003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,426 DEBUG Processing 564/825 atomic regions from SNP 169069 to 169669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,516 DEBUG Processing 394/725 atomic regions from SNP 118090 to 118690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,527 DEBUG Processing 365/710 atomic regions from SNP 109375 to 109975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,583 DEBUG Processing 326/689 atomic regions from SNP 97703 to 98303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,664 DEBUG Processing 565/825 atomic regions from SNP 169369 to 169969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,732 DEBUG Processing 395/725 atomic regions from SNP 118390 to 118990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,779 DEBUG Processing 366/710 atomic regions from SNP 109675 to 110275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,804 DEBUG Processing 327/689 atomic regions from SNP 98003 to 98603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,889 DEBUG Processing 566/825 atomic regions from SNP 169669 to 170269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,946 DEBUG Processing 396/725 atomic regions from SNP 118690 to 119290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,010 DEBUG Processing 367/710 atomic regions from SNP 109975 to 110575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,031 DEBUG Processing 328/689 atomic regions from SNP 98303 to 98903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,118 DEBUG Processing 567/825 atomic regions from SNP 169969 to 170569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,164 DEBUG Processing 397/725 atomic regions from SNP 118990 to 119590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,240 DEBUG Processing 368/710 atomic regions from SNP 110275 to 110875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,257 DEBUG Processing 329/689 atomic regions from SNP 98603 to 99203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,352 DEBUG Processing 568/825 atomic regions from SNP 170269 to 170869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,384 DEBUG Processing 398/725 atomic regions from SNP 119290 to 119890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,477 DEBUG Processing 330/689 atomic regions from SNP 98903 to 99503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,485 DEBUG Processing 369/710 atomic regions from SNP 110575 to 111175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,586 DEBUG Processing 569/825 atomic regions from SNP 170569 to 171169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,606 DEBUG Processing 399/725 atomic regions from SNP 119590 to 120190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,718 DEBUG Processing 331/689 atomic regions from SNP 99203 to 99803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,742 DEBUG Processing 370/710 atomic regions from SNP 110875 to 111475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,820 DEBUG Processing 570/825 atomic regions from SNP 170869 to 171469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,824 DEBUG Processing 400/725 atomic regions from SNP 119890 to 120490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,945 DEBUG Processing 332/689 atomic regions from SNP 99503 to 100103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,965 DEBUG Processing 371/710 atomic regions from SNP 111175 to 111775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,037 DEBUG Processing 401/725 atomic regions from SNP 120190 to 120790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,047 DEBUG Processing 571/825 atomic regions from SNP 171169 to 171769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,175 DEBUG Processing 333/689 atomic regions from SNP 99803 to 100403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,195 DEBUG Processing 372/710 atomic regions from SNP 111475 to 112075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,263 DEBUG Processing 402/725 atomic regions from SNP 120490 to 121090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,279 DEBUG Processing 572/825 atomic regions from SNP 171469 to 172069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,405 DEBUG Processing 334/689 atomic regions from SNP 100103 to 100703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,433 DEBUG Processing 373/710 atomic regions from SNP 111775 to 112375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,492 DEBUG Processing 403/725 atomic regions from SNP 120790 to 121390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,512 DEBUG Processing 573/825 atomic regions from SNP 171769 to 172369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,630 DEBUG Processing 335/689 atomic regions from SNP 100403 to 101003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,676 DEBUG Processing 374/710 atomic regions from SNP 112075 to 112675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,720 DEBUG Processing 404/725 atomic regions from SNP 121090 to 121690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,761 DEBUG Processing 574/825 atomic regions from SNP 172069 to 172669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,847 DEBUG Processing 336/689 atomic regions from SNP 100703 to 101303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,909 DEBUG Processing 375/710 atomic regions from SNP 112375 to 112975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,937 DEBUG Processing 405/725 atomic regions from SNP 121390 to 121990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,998 DEBUG Processing 575/825 atomic regions from SNP 172369 to 172969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,065 DEBUG Processing 337/689 atomic regions from SNP 101003 to 101603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,139 DEBUG Processing 376/710 atomic regions from SNP 112675 to 113275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,152 DEBUG Processing 406/725 atomic regions from SNP 121690 to 122290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,233 DEBUG Processing 576/825 atomic regions from SNP 172669 to 173269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,292 DEBUG Processing 338/689 atomic regions from SNP 101303 to 101903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,346 DEBUG Processing 377/710 atomic regions from SNP 112975 to 113575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,361 DEBUG Processing 407/725 atomic regions from SNP 121990 to 122590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,466 DEBUG Processing 577/825 atomic regions from SNP 172969 to 173569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,522 DEBUG Processing 339/689 atomic regions from SNP 101603 to 102203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,558 DEBUG Processing 378/710 atomic regions from SNP 113275 to 113875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,575 DEBUG Processing 408/725 atomic regions from SNP 122290 to 122890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,693 DEBUG Processing 578/825 atomic regions from SNP 173269 to 173869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,748 DEBUG Processing 340/689 atomic regions from SNP 101903 to 102503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,775 DEBUG Processing 379/710 atomic regions from SNP 113575 to 114175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,794 DEBUG Processing 409/725 atomic regions from SNP 122590 to 123190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,923 DEBUG Processing 579/825 atomic regions from SNP 173569 to 174169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,972 DEBUG Processing 341/689 atomic regions from SNP 102203 to 102803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,994 DEBUG Processing 380/710 atomic regions from SNP 113875 to 114475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,030 DEBUG Processing 410/725 atomic regions from SNP 122890 to 123490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,153 DEBUG Processing 580/825 atomic regions from SNP 173869 to 174469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,195 DEBUG Processing 342/689 atomic regions from SNP 102503 to 103103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,207 DEBUG Processing 381/710 atomic regions from SNP 114175 to 114775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,278 DEBUG Processing 411/725 atomic regions from SNP 123190 to 123790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,394 DEBUG Processing 581/825 atomic regions from SNP 174169 to 174769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,418 DEBUG Processing 382/710 atomic regions from SNP 114475 to 115075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,426 DEBUG Processing 343/689 atomic regions from SNP 102803 to 103403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,518 DEBUG Processing 412/725 atomic regions from SNP 123490 to 124090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,629 DEBUG Processing 383/710 atomic regions from SNP 114775 to 115375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,632 DEBUG Processing 582/825 atomic regions from SNP 174469 to 175069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,656 DEBUG Processing 344/689 atomic regions from SNP 103103 to 103703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,737 DEBUG Processing 413/725 atomic regions from SNP 123790 to 124390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,852 DEBUG Processing 384/710 atomic regions from SNP 115075 to 115675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,869 DEBUG Processing 583/825 atomic regions from SNP 174769 to 175369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,888 DEBUG Processing 345/689 atomic regions from SNP 103403 to 104003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,957 DEBUG Processing 414/725 atomic regions from SNP 124090 to 124690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,073 DEBUG Processing 385/710 atomic regions from SNP 115375 to 115975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,097 DEBUG Processing 584/825 atomic regions from SNP 175069 to 175669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,115 DEBUG Processing 346/689 atomic regions from SNP 103703 to 104303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,187 DEBUG Processing 415/725 atomic regions from SNP 124390 to 124990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,295 DEBUG Processing 386/710 atomic regions from SNP 115675 to 116275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,327 DEBUG Processing 585/825 atomic regions from SNP 175369 to 175969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,337 DEBUG Processing 347/689 atomic regions from SNP 104003 to 104603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,417 DEBUG Processing 416/725 atomic regions from SNP 124690 to 125290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,514 DEBUG Processing 387/710 atomic regions from SNP 115975 to 116575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,559 DEBUG Processing 586/825 atomic regions from SNP 175669 to 176269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,560 DEBUG Processing 348/689 atomic regions from SNP 104303 to 104903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,638 DEBUG Processing 417/725 atomic regions from SNP 124990 to 125590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,733 DEBUG Processing 388/710 atomic regions from SNP 116275 to 116875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,788 DEBUG Processing 349/689 atomic regions from SNP 104603 to 105203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,796 DEBUG Processing 587/825 atomic regions from SNP 175969 to 176569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,859 DEBUG Processing 418/725 atomic regions from SNP 125290 to 125890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,961 DEBUG Processing 389/710 atomic regions from SNP 116575 to 117175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,016 DEBUG Processing 350/689 atomic regions from SNP 104903 to 105503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,033 DEBUG Processing 588/825 atomic regions from SNP 176269 to 176869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,089 DEBUG Processing 419/725 atomic regions from SNP 125590 to 126190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,196 DEBUG Processing 390/710 atomic regions from SNP 116875 to 117475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,261 DEBUG Processing 351/689 atomic regions from SNP 105203 to 105803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,276 DEBUG Processing 589/825 atomic regions from SNP 176569 to 177169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,319 DEBUG Processing 420/725 atomic regions from SNP 125890 to 126490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,421 DEBUG Processing 391/710 atomic regions from SNP 117175 to 117775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,487 DEBUG Processing 352/689 atomic regions from SNP 105503 to 106103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,512 DEBUG Processing 590/825 atomic regions from SNP 176869 to 177469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,539 DEBUG Processing 421/725 atomic regions from SNP 126190 to 126790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,639 DEBUG Processing 392/710 atomic regions from SNP 117475 to 118075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,707 DEBUG Processing 353/689 atomic regions from SNP 105803 to 106403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,740 DEBUG Processing 591/825 atomic regions from SNP 177169 to 177769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,778 DEBUG Processing 422/725 atomic regions from SNP 126490 to 127090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,849 DEBUG Processing 393/710 atomic regions from SNP 117775 to 118375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,927 DEBUG Processing 354/689 atomic regions from SNP 106103 to 106703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,973 DEBUG Processing 592/825 atomic regions from SNP 177469 to 178069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,019 DEBUG Processing 423/725 atomic regions from SNP 126790 to 127390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,065 DEBUG Processing 394/710 atomic regions from SNP 118075 to 118675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,145 DEBUG Processing 355/689 atomic regions from SNP 106403 to 107003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,204 DEBUG Processing 593/825 atomic regions from SNP 177769 to 178369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,245 DEBUG Processing 424/725 atomic regions from SNP 127090 to 127690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,283 DEBUG Processing 395/710 atomic regions from SNP 118375 to 118975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,358 DEBUG Processing 356/689 atomic regions from SNP 106703 to 107303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,435 DEBUG Processing 594/825 atomic regions from SNP 178069 to 178669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,493 DEBUG Processing 425/725 atomic regions from SNP 127390 to 127990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,505 DEBUG Processing 396/710 atomic regions from SNP 118675 to 119275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,578 DEBUG Processing 357/689 atomic regions from SNP 107003 to 107603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,660 DEBUG Processing 595/825 atomic regions from SNP 178369 to 178969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,724 DEBUG Processing 397/710 atomic regions from SNP 118975 to 119575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,726 DEBUG Processing 426/725 atomic regions from SNP 127690 to 128290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,797 DEBUG Processing 358/689 atomic regions from SNP 107303 to 107903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,883 DEBUG Processing 596/825 atomic regions from SNP 178669 to 179269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,942 DEBUG Processing 398/710 atomic regions from SNP 119275 to 119875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,967 DEBUG Processing 427/725 atomic regions from SNP 127990 to 128590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,024 DEBUG Processing 359/689 atomic regions from SNP 107603 to 108203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,109 DEBUG Processing 597/825 atomic regions from SNP 178969 to 179569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,160 DEBUG Processing 399/710 atomic regions from SNP 119575 to 120175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,199 DEBUG Processing 428/725 atomic regions from SNP 128290 to 128890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,241 DEBUG Processing 360/689 atomic regions from SNP 107903 to 108503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,337 DEBUG Processing 598/825 atomic regions from SNP 179269 to 179869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,385 DEBUG Processing 400/710 atomic regions from SNP 119875 to 120475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,423 DEBUG Processing 429/725 atomic regions from SNP 128590 to 129190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,454 DEBUG Processing 361/689 atomic regions from SNP 108203 to 108803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,568 DEBUG Processing 599/825 atomic regions from SNP 179569 to 180169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,610 DEBUG Processing 401/710 atomic regions from SNP 120175 to 120775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,650 DEBUG Processing 430/725 atomic regions from SNP 128890 to 129490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,682 DEBUG Processing 362/689 atomic regions from SNP 108503 to 109103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,795 DEBUG Processing 600/825 atomic regions from SNP 179869 to 180469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,824 DEBUG Processing 402/710 atomic regions from SNP 120475 to 121075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,874 DEBUG Processing 431/725 atomic regions from SNP 129190 to 129790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,911 DEBUG Processing 363/689 atomic regions from SNP 108803 to 109403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,022 DEBUG Processing 601/825 atomic regions from SNP 180169 to 180769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,031 DEBUG Processing 403/710 atomic regions from SNP 120775 to 121375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,094 DEBUG Processing 432/725 atomic regions from SNP 129490 to 130090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,144 DEBUG Processing 364/689 atomic regions from SNP 109103 to 109703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,252 DEBUG Processing 404/710 atomic regions from SNP 121075 to 121675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,255 DEBUG Processing 602/825 atomic regions from SNP 180469 to 181069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,306 DEBUG Processing 433/725 atomic regions from SNP 129790 to 130390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,365 DEBUG Processing 365/689 atomic regions from SNP 109403 to 110003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,497 DEBUG Processing 405/710 atomic regions from SNP 121375 to 121975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,517 DEBUG Processing 603/825 atomic regions from SNP 180769 to 181369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,567 DEBUG Processing 434/725 atomic regions from SNP 130090 to 130690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,590 DEBUG Processing 366/689 atomic regions from SNP 109703 to 110303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,720 DEBUG Processing 406/710 atomic regions from SNP 121675 to 122275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,753 DEBUG Processing 604/825 atomic regions from SNP 181069 to 181669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,814 DEBUG Processing 367/689 atomic regions from SNP 110003 to 110603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,829 DEBUG Processing 435/725 atomic regions from SNP 130390 to 130990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,934 DEBUG Processing 407/710 atomic regions from SNP 121975 to 122575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,991 DEBUG Processing 605/825 atomic regions from SNP 181369 to 181969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,040 DEBUG Processing 368/689 atomic regions from SNP 110303 to 110903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,088 DEBUG Processing 436/725 atomic regions from SNP 130690 to 131290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,147 DEBUG Processing 408/710 atomic regions from SNP 122275 to 122875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,222 DEBUG Processing 606/825 atomic regions from SNP 181669 to 182269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,268 DEBUG Processing 369/689 atomic regions from SNP 110603 to 111203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,353 DEBUG Processing 437/725 atomic regions from SNP 130990 to 131590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,369 DEBUG Processing 409/710 atomic regions from SNP 122575 to 123175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,460 DEBUG Processing 607/825 atomic regions from SNP 181969 to 182569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,512 DEBUG Processing 370/689 atomic regions from SNP 110903 to 111503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,613 DEBUG Processing 410/710 atomic regions from SNP 122875 to 123475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,632 DEBUG Processing 438/725 atomic regions from SNP 131290 to 131890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,694 DEBUG Processing 608/825 atomic regions from SNP 182269 to 182869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,729 DEBUG Processing 371/689 atomic regions from SNP 111203 to 111803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,833 DEBUG Processing 411/710 atomic regions from SNP 123175 to 123775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,892 DEBUG Processing 439/725 atomic regions from SNP 131590 to 132190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,937 DEBUG Processing 609/825 atomic regions from SNP 182569 to 183169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,958 DEBUG Processing 372/689 atomic regions from SNP 111503 to 112103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,041 DEBUG Processing 412/710 atomic regions from SNP 123475 to 124075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,152 DEBUG Processing 440/725 atomic regions from SNP 131890 to 132490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,172 DEBUG Processing 610/825 atomic regions from SNP 182869 to 183469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,184 DEBUG Processing 373/689 atomic regions from SNP 111803 to 112403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,252 DEBUG Processing 413/710 atomic regions from SNP 123775 to 124375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,406 DEBUG Processing 441/725 atomic regions from SNP 132190 to 132790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,406 DEBUG Processing 611/825 atomic regions from SNP 183169 to 183769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,410 DEBUG Processing 374/689 atomic regions from SNP 112103 to 112703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,469 DEBUG Processing 414/710 atomic regions from SNP 124075 to 124675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,632 DEBUG Processing 375/689 atomic regions from SNP 112403 to 113003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,639 DEBUG Processing 612/825 atomic regions from SNP 183469 to 184069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,663 DEBUG Processing 442/725 atomic regions from SNP 132490 to 133090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,694 DEBUG Processing 415/710 atomic regions from SNP 124375 to 124975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,856 DEBUG Processing 376/689 atomic regions from SNP 112703 to 113303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,872 DEBUG Processing 613/825 atomic regions from SNP 183769 to 184369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,918 DEBUG Processing 416/710 atomic regions from SNP 124675 to 125275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,923 DEBUG Processing 443/725 atomic regions from SNP 132790 to 133390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,086 DEBUG Processing 377/689 atomic regions from SNP 113003 to 113603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,108 DEBUG Processing 614/825 atomic regions from SNP 184069 to 184669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,141 DEBUG Processing 417/710 atomic regions from SNP 124975 to 125575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,182 DEBUG Processing 444/725 atomic regions from SNP 133090 to 133690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,257 DEBUG Segmenting atomic regions: 2025-01-31 09:47:23,320 DEBUG Processing 378/689 atomic regions from SNP 113303 to 113903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,339 DEBUG Processing 1/637 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:23,347 DEBUG Processing 615/825 atomic regions from SNP 184369 to 184969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,363 DEBUG Processing 418/710 atomic regions from SNP 125275 to 125875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,439 DEBUG Processing 445/725 atomic regions from SNP 133390 to 133990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,561 DEBUG Processing 379/689 atomic regions from SNP 113603 to 114203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,566 DEBUG Processing 2/637 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:23,584 DEBUG Processing 419/710 atomic regions from SNP 125575 to 126175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,598 DEBUG Processing 616/825 atomic regions from SNP 184669 to 185269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,692 DEBUG Processing 446/725 atomic regions from SNP 133690 to 134290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,774 DEBUG Processing 3/637 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:23,794 DEBUG Processing 380/689 atomic regions from SNP 113903 to 114503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,806 DEBUG Processing 420/710 atomic regions from SNP 125875 to 126475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,870 DEBUG Processing 617/825 atomic regions from SNP 184969 to 185569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,934 DEBUG Processing 447/725 atomic regions from SNP 133990 to 134590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,971 DEBUG Processing 4/637 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:24,014 DEBUG Processing 381/689 atomic regions from SNP 114203 to 114803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,020 DEBUG Processing 421/710 atomic regions from SNP 126175 to 126775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,137 DEBUG Processing 618/825 atomic regions from SNP 185269 to 185869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,152 DEBUG Processing 448/725 atomic regions from SNP 134290 to 134890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,194 DEBUG Processing 5/637 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:24,231 DEBUG Processing 422/710 atomic regions from SNP 126475 to 127075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,231 DEBUG Processing 382/689 atomic regions from SNP 114503 to 115103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,369 DEBUG Processing 449/725 atomic regions from SNP 134590 to 135190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,403 DEBUG Processing 6/637 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:24,405 DEBUG Processing 619/825 atomic regions from SNP 185569 to 186169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,440 DEBUG Processing 423/710 atomic regions from SNP 126775 to 127375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,456 DEBUG Processing 383/689 atomic regions from SNP 114803 to 115403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,590 DEBUG Processing 450/725 atomic regions from SNP 134890 to 135490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,609 DEBUG Processing 7/637 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:24,657 DEBUG Processing 424/710 atomic regions from SNP 127075 to 127675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,673 DEBUG Processing 620/825 atomic regions from SNP 185869 to 186469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,690 DEBUG Processing 384/689 atomic regions from SNP 115103 to 115703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,807 DEBUG Processing 8/637 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:24,812 DEBUG Processing 451/725 atomic regions from SNP 135190 to 135790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,886 DEBUG Processing 425/710 atomic regions from SNP 127375 to 127975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,920 DEBUG Processing 385/689 atomic regions from SNP 115403 to 116003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,932 DEBUG Processing 621/825 atomic regions from SNP 186169 to 186769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,013 DEBUG Processing 9/637 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:25,036 DEBUG Processing 452/725 atomic regions from SNP 135490 to 136090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,099 DEBUG Processing 426/710 atomic regions from SNP 127675 to 128275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,135 DEBUG Processing 386/689 atomic regions from SNP 115703 to 116303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,173 DEBUG Processing 622/825 atomic regions from SNP 186469 to 187069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,223 DEBUG Processing 10/637 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:25,257 DEBUG Processing 453/725 atomic regions from SNP 135790 to 136390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,317 DEBUG Processing 427/710 atomic regions from SNP 127975 to 128575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,355 DEBUG Processing 387/689 atomic regions from SNP 116003 to 116603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,397 DEBUG Processing 623/825 atomic regions from SNP 186769 to 187369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,423 DEBUG Processing 11/637 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:25,475 DEBUG Processing 454/725 atomic regions from SNP 136090 to 136690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,531 DEBUG Processing 428/710 atomic regions from SNP 128275 to 128875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,593 DEBUG Processing 388/689 atomic regions from SNP 116303 to 116903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,634 DEBUG Processing 12/637 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:25,643 DEBUG Processing 624/825 atomic regions from SNP 187069 to 187669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,686 DEBUG Processing 455/725 atomic regions from SNP 136390 to 136990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,746 DEBUG Processing 429/710 atomic regions from SNP 128575 to 129175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,835 DEBUG Processing 389/689 atomic regions from SNP 116603 to 117203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,850 DEBUG Processing 13/637 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:25,886 DEBUG Processing 625/825 atomic regions from SNP 187369 to 187969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,897 DEBUG Processing 456/725 atomic regions from SNP 136690 to 137290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,953 DEBUG Processing 430/710 atomic regions from SNP 128875 to 129475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,058 DEBUG Processing 14/637 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:26,066 DEBUG Processing 390/689 atomic regions from SNP 116903 to 117503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,113 DEBUG Processing 457/725 atomic regions from SNP 136990 to 137590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,131 DEBUG Processing 626/825 atomic regions from SNP 187669 to 188269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,168 DEBUG Processing 431/710 atomic regions from SNP 129175 to 129775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,259 DEBUG Processing 15/637 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:26,292 DEBUG Processing 391/689 atomic regions from SNP 117203 to 117803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,337 DEBUG Processing 458/725 atomic regions from SNP 137290 to 137890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,366 DEBUG Processing 627/825 atomic regions from SNP 187969 to 188569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,389 DEBUG Processing 432/710 atomic regions from SNP 129475 to 130075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,463 DEBUG Processing 16/637 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:26,522 DEBUG Processing 392/689 atomic regions from SNP 117503 to 118103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,564 DEBUG Processing 459/725 atomic regions from SNP 137590 to 138190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,605 DEBUG Processing 628/825 atomic regions from SNP 188269 to 188869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,617 DEBUG Processing 433/710 atomic regions from SNP 129775 to 130375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,672 DEBUG Processing 17/637 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:26,753 DEBUG Processing 393/689 atomic regions from SNP 117803 to 118403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,788 DEBUG Processing 460/725 atomic regions from SNP 137890 to 138490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,842 DEBUG Processing 434/710 atomic regions from SNP 130075 to 130675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,846 DEBUG Processing 629/825 atomic regions from SNP 188569 to 189169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,877 DEBUG Processing 18/637 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:26,977 DEBUG Processing 394/689 atomic regions from SNP 118103 to 118703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,003 DEBUG Processing 461/725 atomic regions from SNP 138190 to 138790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,066 DEBUG Processing 435/710 atomic regions from SNP 130375 to 130975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,087 DEBUG Processing 19/637 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:27,089 DEBUG Processing 630/825 atomic regions from SNP 188869 to 189469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,200 DEBUG Processing 395/689 atomic regions from SNP 118403 to 119003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,234 DEBUG Processing 462/725 atomic regions from SNP 138490 to 139090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,280 DEBUG Processing 436/710 atomic regions from SNP 130675 to 131275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,295 DEBUG Processing 20/637 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:27,327 DEBUG Processing 631/825 atomic regions from SNP 189169 to 189769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,430 DEBUG Processing 396/689 atomic regions from SNP 118703 to 119303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,468 DEBUG Processing 463/725 atomic regions from SNP 138790 to 139390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,491 DEBUG Processing 437/710 atomic regions from SNP 130975 to 131575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,494 DEBUG Processing 21/637 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:27,568 DEBUG Processing 632/825 atomic regions from SNP 189469 to 190069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,661 DEBUG Processing 397/689 atomic regions from SNP 119003 to 119603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,686 DEBUG Processing 464/725 atomic regions from SNP 139090 to 139690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,697 DEBUG Processing 22/637 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:27,720 DEBUG Processing 438/710 atomic regions from SNP 131275 to 131875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,812 DEBUG Processing 633/825 atomic regions from SNP 189769 to 190369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,892 DEBUG Processing 398/689 atomic regions from SNP 119303 to 119903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,902 DEBUG Processing 465/725 atomic regions from SNP 139390 to 139990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,902 DEBUG Processing 23/637 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:27,954 DEBUG Processing 439/710 atomic regions from SNP 131575 to 132175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,067 DEBUG Processing 634/825 atomic regions from SNP 190069 to 190669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,118 DEBUG Processing 24/637 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:28,133 DEBUG Processing 399/689 atomic regions from SNP 119603 to 120203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,134 DEBUG Processing 466/725 atomic regions from SNP 139690 to 140290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,218 DEBUG Processing 440/710 atomic regions from SNP 131875 to 132475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,322 DEBUG Processing 635/825 atomic regions from SNP 190369 to 190969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,328 DEBUG Processing 25/637 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:28,349 DEBUG Processing 467/725 atomic regions from SNP 139990 to 140590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,362 DEBUG Processing 400/689 atomic regions from SNP 119903 to 120503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,463 DEBUG Processing 441/710 atomic regions from SNP 132175 to 132775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,543 DEBUG Processing 26/637 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:28,565 DEBUG Processing 468/725 atomic regions from SNP 140290 to 140890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,574 DEBUG Processing 636/825 atomic regions from SNP 190669 to 191269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,601 DEBUG Processing 401/689 atomic regions from SNP 120203 to 120803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,685 DEBUG Processing 442/710 atomic regions from SNP 132475 to 133075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,749 DEBUG Processing 27/637 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:28,788 DEBUG Processing 469/725 atomic regions from SNP 140590 to 141190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,821 DEBUG Processing 637/825 atomic regions from SNP 190969 to 191569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,842 DEBUG Processing 402/689 atomic regions from SNP 120503 to 121103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,903 DEBUG Processing 443/710 atomic regions from SNP 132775 to 133375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,951 DEBUG Processing 28/637 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:29,013 DEBUG Processing 470/725 atomic regions from SNP 140890 to 141490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,059 DEBUG Processing 638/825 atomic regions from SNP 191269 to 191869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,073 DEBUG Processing 403/689 atomic regions from SNP 120803 to 121403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,129 DEBUG Processing 444/710 atomic regions from SNP 133075 to 133675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,149 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:47:29,151 DEBUG Processing 29/637 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:29,237 DEBUG Processing 471/725 atomic regions from SNP 141190 to 141790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,299 DEBUG Processing 639/825 atomic regions from SNP 191569 to 192169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,306 DEBUG Processing 404/689 atomic regions from SNP 121103 to 121703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,358 DEBUG Processing 30/637 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:29,384 DEBUG Processing 445/710 atomic regions from SNP 133375 to 133975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,464 DEBUG Processing 472/725 atomic regions from SNP 141490 to 142090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,537 DEBUG Processing 640/825 atomic regions from SNP 191869 to 192469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,543 DEBUG Processing 405/689 atomic regions from SNP 121403 to 122003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,568 DEBUG Processing 31/637 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:29,641 DEBUG Processing 446/710 atomic regions from SNP 133675 to 134275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,689 DEBUG Processing 473/725 atomic regions from SNP 141790 to 142390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,776 DEBUG Processing 406/689 atomic regions from SNP 121703 to 122303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,777 DEBUG Processing 641/825 atomic regions from SNP 192169 to 192769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,778 DEBUG Processing 32/637 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:29,894 DEBUG Processing 447/710 atomic regions from SNP 133975 to 134575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,910 DEBUG Processing 474/725 atomic regions from SNP 142090 to 142690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,983 DEBUG Processing 33/637 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:30,007 DEBUG Processing 407/689 atomic regions from SNP 122003 to 122603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,012 DEBUG Processing 642/825 atomic regions from SNP 192469 to 193069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,127 DEBUG Processing 448/710 atomic regions from SNP 134275 to 134875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,157 DEBUG Processing 475/725 atomic regions from SNP 142390 to 142990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,186 DEBUG Processing 34/637 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:30,235 DEBUG Processing 408/689 atomic regions from SNP 122303 to 122903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,245 DEBUG Processing 643/825 atomic regions from SNP 192769 to 193369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,359 DEBUG Processing 449/710 atomic regions from SNP 134575 to 135175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,386 DEBUG Processing 476/725 atomic regions from SNP 142690 to 143290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,391 DEBUG Processing 35/637 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:30,465 DEBUG Processing 409/689 atomic regions from SNP 122603 to 123203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,481 DEBUG Processing 644/825 atomic regions from SNP 193069 to 193669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,585 DEBUG Processing 450/710 atomic regions from SNP 134875 to 135475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,600 DEBUG Processing 36/637 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:30,618 DEBUG Processing 477/725 atomic regions from SNP 142990 to 143590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,700 DEBUG Processing 410/689 atomic regions from SNP 122903 to 123503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,714 DEBUG Processing 645/825 atomic regions from SNP 193369 to 193969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,802 DEBUG Processing 37/637 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:30,808 DEBUG Processing 451/710 atomic regions from SNP 135175 to 135775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,853 DEBUG Processing 478/725 atomic regions from SNP 143290 to 143890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,926 DEBUG Processing 411/689 atomic regions from SNP 123203 to 123803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,973 DEBUG Processing 646/825 atomic regions from SNP 193669 to 194269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,000 DEBUG Processing 38/637 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:31,024 DEBUG Processing 452/710 atomic regions from SNP 135475 to 136075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,078 DEBUG Processing 479/725 atomic regions from SNP 143590 to 144190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,145 DEBUG Processing 412/689 atomic regions from SNP 123503 to 124103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,199 DEBUG Processing 39/637 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:31,216 DEBUG Processing 647/825 atomic regions from SNP 193969 to 194569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,239 DEBUG Processing 453/710 atomic regions from SNP 135775 to 136375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,304 DEBUG Processing 480/725 atomic regions from SNP 143890 to 144490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,371 DEBUG Processing 413/689 atomic regions from SNP 123803 to 124403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,407 DEBUG Processing 40/637 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:31,455 DEBUG Processing 648/825 atomic regions from SNP 194269 to 194869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,474 DEBUG Processing 454/710 atomic regions from SNP 136075 to 136675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,540 DEBUG Processing 481/725 atomic regions from SNP 144190 to 144790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,606 DEBUG Processing 414/689 atomic regions from SNP 124103 to 124703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,611 DEBUG Processing 41/637 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:31,689 DEBUG Processing 649/825 atomic regions from SNP 194569 to 195169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,708 DEBUG Processing 455/710 atomic regions from SNP 136375 to 136975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,776 DEBUG Processing 482/725 atomic regions from SNP 144490 to 145090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,817 DEBUG Processing 42/637 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:31,853 DEBUG Processing 415/689 atomic regions from SNP 124403 to 125003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,916 DEBUG Processing 650/825 atomic regions from SNP 194869 to 195469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,924 DEBUG Processing 456/710 atomic regions from SNP 136675 to 137275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,005 DEBUG Processing 483/725 atomic regions from SNP 144790 to 145390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,025 DEBUG Processing 43/637 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:32,097 DEBUG Processing 416/689 atomic regions from SNP 124703 to 125303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,136 DEBUG Processing 457/710 atomic regions from SNP 136975 to 137575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,154 DEBUG Processing 651/825 atomic regions from SNP 195169 to 195769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,225 DEBUG Processing 484/725 atomic regions from SNP 145090 to 145690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,230 DEBUG Processing 44/637 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:32,339 DEBUG Processing 417/689 atomic regions from SNP 125003 to 125603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,356 DEBUG Processing 458/710 atomic regions from SNP 137275 to 137875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,397 DEBUG Processing 652/825 atomic regions from SNP 195469 to 196069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,434 DEBUG Processing 45/637 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:32,441 DEBUG Processing 485/725 atomic regions from SNP 145390 to 145990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,575 DEBUG Processing 418/689 atomic regions from SNP 125303 to 125903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,586 DEBUG Processing 459/710 atomic regions from SNP 137575 to 138175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,642 DEBUG Processing 653/825 atomic regions from SNP 195769 to 196369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,646 DEBUG Processing 46/637 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:32,663 DEBUG Processing 486/725 atomic regions from SNP 145690 to 146290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,806 DEBUG Processing 419/689 atomic regions from SNP 125603 to 126203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,810 DEBUG Processing 460/710 atomic regions from SNP 137875 to 138475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,858 DEBUG Processing 47/637 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:32,887 DEBUG Processing 654/825 atomic regions from SNP 196069 to 196669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,894 DEBUG Processing 487/725 atomic regions from SNP 145990 to 146590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,023 DEBUG Processing 461/710 atomic regions from SNP 138175 to 138775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,037 DEBUG Processing 420/689 atomic regions from SNP 125903 to 126503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,071 DEBUG Processing 48/637 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:33,124 DEBUG Processing 488/725 atomic regions from SNP 146290 to 146890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,132 DEBUG Processing 655/825 atomic regions from SNP 196369 to 196969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,244 DEBUG Processing 462/710 atomic regions from SNP 138475 to 139075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,274 DEBUG Processing 421/689 atomic regions from SNP 126203 to 126803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,276 DEBUG Processing 49/637 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:33,349 DEBUG Processing 489/725 atomic regions from SNP 146590 to 147190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,385 DEBUG Processing 656/825 atomic regions from SNP 196669 to 197269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,471 DEBUG Processing 463/710 atomic regions from SNP 138775 to 139375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,478 DEBUG Processing 50/637 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:33,514 DEBUG Processing 422/689 atomic regions from SNP 126503 to 127103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,565 DEBUG Processing 490/725 atomic regions from SNP 146890 to 147490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,617 DEBUG Processing 657/825 atomic regions from SNP 196969 to 197569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,679 DEBUG Processing 51/637 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:33,696 DEBUG Processing 464/710 atomic regions from SNP 139075 to 139675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,742 DEBUG Processing 423/689 atomic regions from SNP 126803 to 127403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,786 DEBUG Processing 491/725 atomic regions from SNP 147190 to 147790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,846 DEBUG Processing 658/825 atomic regions from SNP 197269 to 197869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,875 DEBUG Processing 52/637 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:33,907 DEBUG Processing 465/710 atomic regions from SNP 139375 to 139975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,973 DEBUG Processing 424/689 atomic regions from SNP 127103 to 127703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,009 DEBUG Processing 492/725 atomic regions from SNP 147490 to 148090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,075 DEBUG Processing 53/637 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:34,076 DEBUG Processing 659/825 atomic regions from SNP 197569 to 198169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,116 DEBUG Processing 466/710 atomic regions from SNP 139675 to 140275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,187 DEBUG Processing 425/689 atomic regions from SNP 127403 to 128003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,231 DEBUG Processing 493/725 atomic regions from SNP 147790 to 148390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,279 DEBUG Processing 54/637 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:34,320 DEBUG Processing 660/825 atomic regions from SNP 197869 to 198469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,338 DEBUG Processing 467/710 atomic regions from SNP 139975 to 140575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,410 DEBUG Processing 426/689 atomic regions from SNP 127703 to 128303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,453 DEBUG Processing 494/725 atomic regions from SNP 148090 to 148690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,485 DEBUG Processing 55/637 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:34,566 DEBUG Processing 468/710 atomic regions from SNP 140275 to 140875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,579 DEBUG Processing 661/825 atomic regions from SNP 198169 to 198769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,653 DEBUG Processing 427/689 atomic regions from SNP 128003 to 128603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,676 DEBUG Processing 495/725 atomic regions from SNP 148390 to 148990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,688 DEBUG Processing 56/637 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:34,790 DEBUG Processing 469/710 atomic regions from SNP 140575 to 141175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,818 DEBUG Processing 662/825 atomic regions from SNP 198469 to 199069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,887 DEBUG Processing 428/689 atomic regions from SNP 128303 to 128903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,897 DEBUG Processing 57/637 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:34,909 DEBUG Processing 496/725 atomic regions from SNP 148690 to 149290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,011 DEBUG Processing 470/710 atomic regions from SNP 140875 to 141475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,066 DEBUG Processing 663/825 atomic regions from SNP 198769 to 199369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,101 DEBUG Processing 58/637 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:35,116 DEBUG Processing 429/689 atomic regions from SNP 128603 to 129203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,137 DEBUG Processing 497/725 atomic regions from SNP 148990 to 149590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,239 DEBUG Processing 471/710 atomic regions from SNP 141175 to 141775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,308 DEBUG Processing 59/637 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:35,329 DEBUG Processing 664/825 atomic regions from SNP 199069 to 199669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,362 DEBUG Processing 430/689 atomic regions from SNP 128903 to 129503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,370 DEBUG Processing 498/725 atomic regions from SNP 149290 to 149890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,464 DEBUG Processing 472/710 atomic regions from SNP 141475 to 142075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,511 DEBUG Processing 60/637 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:35,587 DEBUG Processing 499/725 atomic regions from SNP 149590 to 150190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,590 DEBUG Processing 665/825 atomic regions from SNP 199369 to 199969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,594 DEBUG Processing 431/689 atomic regions from SNP 129203 to 129803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,676 DEBUG Processing 473/710 atomic regions from SNP 141775 to 142375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,712 DEBUG Processing 61/637 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:35,801 DEBUG Processing 500/725 atomic regions from SNP 149890 to 150490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,820 DEBUG Processing 432/689 atomic regions from SNP 129503 to 130103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,833 DEBUG Processing 666/825 atomic regions from SNP 199669 to 200269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,885 DEBUG Processing 474/710 atomic regions from SNP 142075 to 142675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,905 DEBUG Processing 62/637 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:36,033 DEBUG Processing 501/725 atomic regions from SNP 150190 to 150790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,064 DEBUG Processing 433/689 atomic regions from SNP 129803 to 130403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,083 DEBUG Processing 667/825 atomic regions from SNP 199969 to 200569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,100 DEBUG Processing 475/710 atomic regions from SNP 142375 to 142975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,107 DEBUG Processing 63/637 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:36,274 DEBUG Processing 502/725 atomic regions from SNP 150490 to 151090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,298 DEBUG Processing 434/689 atomic regions from SNP 130103 to 130703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,315 DEBUG Processing 64/637 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:36,316 DEBUG Processing 476/710 atomic regions from SNP 142675 to 143275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,327 DEBUG Processing 668/825 atomic regions from SNP 200269 to 200869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,489 DEBUG Processing 503/725 atomic regions from SNP 150790 to 151390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,525 DEBUG Processing 477/710 atomic regions from SNP 142975 to 143575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,526 DEBUG Processing 65/637 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:36,528 DEBUG Processing 435/689 atomic regions from SNP 130403 to 131003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,563 DEBUG Processing 669/825 atomic regions from SNP 200569 to 201169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,704 DEBUG Processing 504/725 atomic regions from SNP 151090 to 151690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,729 DEBUG Processing 66/637 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:36,742 DEBUG Processing 478/710 atomic regions from SNP 143275 to 143875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,762 DEBUG Processing 436/689 atomic regions from SNP 130703 to 131303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,800 DEBUG Processing 670/825 atomic regions from SNP 200869 to 201469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,922 DEBUG Processing 505/725 atomic regions from SNP 151390 to 151990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,935 DEBUG Processing 67/637 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:36,962 DEBUG Processing 479/710 atomic regions from SNP 143575 to 144175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,993 DEBUG Processing 437/689 atomic regions from SNP 131003 to 131603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,028 DEBUG Processing 671/825 atomic regions from SNP 201169 to 201769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,136 DEBUG Processing 506/725 atomic regions from SNP 151690 to 152290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,140 DEBUG Processing 68/637 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:37,181 DEBUG Processing 480/710 atomic regions from SNP 143875 to 144475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,226 DEBUG Processing 438/689 atomic regions from SNP 131303 to 131903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,265 DEBUG Processing 672/825 atomic regions from SNP 201469 to 202069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,338 DEBUG Processing 69/637 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:37,356 DEBUG Processing 507/725 atomic regions from SNP 151990 to 152590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,405 DEBUG Processing 481/710 atomic regions from SNP 144175 to 144775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,463 DEBUG Processing 439/689 atomic regions from SNP 131603 to 132203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,507 DEBUG Processing 673/825 atomic regions from SNP 201769 to 202369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,567 DEBUG Processing 70/637 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:37,572 DEBUG Processing 508/725 atomic regions from SNP 152290 to 152890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,623 DEBUG Processing 482/710 atomic regions from SNP 144475 to 145075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,698 DEBUG Processing 440/689 atomic regions from SNP 131903 to 132503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,755 DEBUG Processing 674/825 atomic regions from SNP 202069 to 202669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,786 DEBUG Processing 71/637 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:37,799 DEBUG Processing 509/725 atomic regions from SNP 152590 to 153190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,842 DEBUG Processing 483/710 atomic regions from SNP 144775 to 145375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,928 DEBUG Processing 441/689 atomic regions from SNP 132203 to 132803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,000 DEBUG Processing 675/825 atomic regions from SNP 202369 to 202969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,015 DEBUG Processing 72/637 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:38,028 DEBUG Processing 510/725 atomic regions from SNP 152890 to 153490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,067 DEBUG Processing 484/710 atomic regions from SNP 145075 to 145675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,152 DEBUG Processing 442/689 atomic regions from SNP 132503 to 133103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,249 DEBUG Processing 73/637 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:38,270 DEBUG Processing 676/825 atomic regions from SNP 202669 to 203269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,274 DEBUG Processing 511/725 atomic regions from SNP 153190 to 153790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,298 DEBUG Processing 485/710 atomic regions from SNP 145375 to 145975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,373 DEBUG Processing 443/689 atomic regions from SNP 132803 to 133403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,477 DEBUG Processing 74/637 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:38,495 DEBUG Processing 512/725 atomic regions from SNP 153490 to 154090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,515 DEBUG Processing 677/825 atomic regions from SNP 202969 to 203569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,518 DEBUG Processing 486/710 atomic regions from SNP 145675 to 146275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,601 DEBUG Processing 444/689 atomic regions from SNP 133103 to 133703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,688 DEBUG Processing 75/637 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:38,709 DEBUG Processing 513/725 atomic regions from SNP 153790 to 154390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,728 DEBUG Processing 487/710 atomic regions from SNP 145975 to 146575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,747 DEBUG Processing 678/825 atomic regions from SNP 203269 to 203869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,824 DEBUG Processing 445/689 atomic regions from SNP 133403 to 134003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,908 DEBUG Processing 76/637 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:38,922 DEBUG Processing 514/725 atomic regions from SNP 154090 to 154690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,936 DEBUG Processing 488/710 atomic regions from SNP 146275 to 146875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,974 DEBUG Processing 679/825 atomic regions from SNP 203569 to 204169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,044 DEBUG Processing 446/689 atomic regions from SNP 133703 to 134303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,126 DEBUG Processing 77/637 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:39,139 DEBUG Processing 515/725 atomic regions from SNP 154390 to 154990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,148 DEBUG Processing 489/710 atomic regions from SNP 146575 to 147175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,197 DEBUG Processing 680/825 atomic regions from SNP 203869 to 204469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,262 DEBUG Processing 447/689 atomic regions from SNP 134003 to 134603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,347 DEBUG Processing 78/637 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:39,366 DEBUG Processing 516/725 atomic regions from SNP 154690 to 155290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,369 DEBUG Processing 490/710 atomic regions from SNP 146875 to 147475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,424 DEBUG Processing 681/825 atomic regions from SNP 204169 to 204769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,488 DEBUG Processing 448/689 atomic regions from SNP 134303 to 134903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,545 DEBUG Processing 79/637 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:39,589 DEBUG Processing 517/725 atomic regions from SNP 154990 to 155590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,590 DEBUG Processing 491/710 atomic regions from SNP 147175 to 147775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,655 DEBUG Processing 682/825 atomic regions from SNP 204469 to 205069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,709 DEBUG Processing 449/689 atomic regions from SNP 134603 to 135203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,743 DEBUG Processing 80/637 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:39,803 DEBUG Processing 492/710 atomic regions from SNP 147475 to 148075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,806 DEBUG Processing 518/725 atomic regions from SNP 155290 to 155890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,881 DEBUG Processing 683/825 atomic regions from SNP 204769 to 205369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,934 DEBUG Processing 450/689 atomic regions from SNP 134903 to 135503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,969 DEBUG Processing 81/637 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,012 DEBUG Processing 493/710 atomic regions from SNP 147775 to 148375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,019 DEBUG Processing 519/725 atomic regions from SNP 155590 to 156190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,112 DEBUG Processing 684/825 atomic regions from SNP 205069 to 205669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,162 DEBUG Processing 451/689 atomic regions from SNP 135203 to 135803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,188 DEBUG Processing 82/637 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,229 DEBUG Processing 494/710 atomic regions from SNP 148075 to 148675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,237 DEBUG Processing 520/725 atomic regions from SNP 155890 to 156490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,370 DEBUG Processing 685/825 atomic regions from SNP 205369 to 205969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,387 DEBUG Processing 452/689 atomic regions from SNP 135503 to 136103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,418 DEBUG Processing 83/637 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,450 DEBUG Processing 495/710 atomic regions from SNP 148375 to 148975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,460 DEBUG Processing 521/725 atomic regions from SNP 156190 to 156790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,611 DEBUG Processing 453/689 atomic regions from SNP 135803 to 136403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,634 DEBUG Processing 84/637 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,635 DEBUG Processing 686/825 atomic regions from SNP 205669 to 206269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,674 DEBUG Processing 496/710 atomic regions from SNP 148675 to 149275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,688 DEBUG Processing 522/725 atomic regions from SNP 156490 to 157090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,838 DEBUG Processing 454/689 atomic regions from SNP 136103 to 136703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,839 DEBUG Processing 85/637 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:40,895 DEBUG Processing 497/710 atomic regions from SNP 148975 to 149575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,906 DEBUG Processing 687/825 atomic regions from SNP 205969 to 206569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,912 DEBUG Processing 523/725 atomic regions from SNP 156790 to 157390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,046 DEBUG Processing 86/637 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,072 DEBUG Processing 455/689 atomic regions from SNP 136403 to 137003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,114 DEBUG Processing 498/710 atomic regions from SNP 149275 to 149875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,136 DEBUG Processing 524/725 atomic regions from SNP 157090 to 157690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,168 DEBUG Processing 688/825 atomic regions from SNP 206269 to 206869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,245 DEBUG Processing 87/637 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,298 DEBUG Processing 456/689 atomic regions from SNP 136703 to 137303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,326 DEBUG Processing 499/710 atomic regions from SNP 149575 to 150175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,353 DEBUG Processing 525/725 atomic regions from SNP 157390 to 157990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,407 DEBUG Processing 689/825 atomic regions from SNP 206569 to 207169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,438 DEBUG Processing 88/637 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,523 DEBUG Processing 457/689 atomic regions from SNP 137003 to 137603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,543 DEBUG Processing 500/710 atomic regions from SNP 149875 to 150475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,583 DEBUG Processing 526/725 atomic regions from SNP 157690 to 158290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,642 DEBUG Processing 89/637 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,661 DEBUG Processing 690/825 atomic regions from SNP 206869 to 207469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,744 DEBUG Processing 458/689 atomic regions from SNP 137303 to 137903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,766 DEBUG Processing 501/710 atomic regions from SNP 150175 to 150775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,814 DEBUG Processing 527/725 atomic regions from SNP 157990 to 158590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,852 DEBUG Processing 90/637 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:41,908 DEBUG Processing 691/825 atomic regions from SNP 207169 to 207769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,971 DEBUG Processing 459/689 atomic regions from SNP 137603 to 138203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,988 DEBUG Processing 502/710 atomic regions from SNP 150475 to 151075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,040 DEBUG Processing 528/725 atomic regions from SNP 158290 to 158890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,058 DEBUG Processing 91/637 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,154 DEBUG Processing 692/825 atomic regions from SNP 207469 to 208069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,199 DEBUG Processing 460/689 atomic regions from SNP 137903 to 138503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,227 DEBUG Processing 503/710 atomic regions from SNP 150775 to 151375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,250 DEBUG Processing 92/637 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,259 DEBUG Processing 529/725 atomic regions from SNP 158590 to 159190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,383 DEBUG Processing 693/825 atomic regions from SNP 207769 to 208369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,431 DEBUG Processing 461/689 atomic regions from SNP 138203 to 138803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,456 DEBUG Processing 93/637 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,458 DEBUG Processing 504/710 atomic regions from SNP 151075 to 151675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,478 DEBUG Processing 530/725 atomic regions from SNP 158890 to 159490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,614 DEBUG Processing 694/825 atomic regions from SNP 208069 to 208669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,663 DEBUG Processing 462/689 atomic regions from SNP 138503 to 139103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,667 DEBUG Processing 94/637 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,686 DEBUG Processing 505/710 atomic regions from SNP 151375 to 151975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,697 DEBUG Processing 531/725 atomic regions from SNP 159190 to 159790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,847 DEBUG Processing 695/825 atomic regions from SNP 208369 to 208969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,866 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:47:42,867 DEBUG chr9: Signal quantile: 0.994. signal threshold: 18. Best RMSEA: 0.028 2025-01-31 09:47:42,870 DEBUG Processing 95/637 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:42,892 DEBUG Processing 463/689 atomic regions from SNP 138803 to 139403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,917 DEBUG Processing 532/725 atomic regions from SNP 159490 to 160090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,919 DEBUG Processing 506/710 atomic regions from SNP 151675 to 152275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,084 DEBUG Processing 96/637 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,090 DEBUG Processing 696/825 atomic regions from SNP 208669 to 209269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,127 DEBUG Processing 464/689 atomic regions from SNP 139103 to 139703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,135 DEBUG Processing 533/725 atomic regions from SNP 159790 to 160390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,146 DEBUG Processing 507/710 atomic regions from SNP 151975 to 152575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,298 DEBUG Processing 97/637 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,334 DEBUG Processing 697/825 atomic regions from SNP 208969 to 209569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,360 DEBUG Processing 534/725 atomic regions from SNP 160090 to 160690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,366 DEBUG Processing 465/689 atomic regions from SNP 139403 to 140003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,383 DEBUG Processing 508/710 atomic regions from SNP 152275 to 152875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,565 DEBUG Processing 98/637 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,658 DEBUG Processing 698/825 atomic regions from SNP 209269 to 209869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,670 DEBUG Processing 535/725 atomic regions from SNP 160390 to 160990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,691 DEBUG Processing 466/689 atomic regions from SNP 139703 to 140303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,733 DEBUG Processing 509/710 atomic regions from SNP 152575 to 153175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,780 DEBUG Processing 99/637 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:43,905 DEBUG Processing 699/825 atomic regions from SNP 209569 to 210169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,921 DEBUG Processing 536/725 atomic regions from SNP 160690 to 161290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,996 DEBUG Processing 467/689 atomic regions from SNP 140003 to 140603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,063 DEBUG Processing 510/710 atomic regions from SNP 152875 to 153475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,087 DEBUG Processing 100/637 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,212 DEBUG Processing 700/825 atomic regions from SNP 209869 to 210469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,221 DEBUG Processing 537/725 atomic regions from SNP 160990 to 161590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,258 DEBUG Processing 468/689 atomic regions from SNP 140303 to 140903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,354 DEBUG Processing 101/637 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,374 DEBUG Processing 511/710 atomic regions from SNP 153175 to 153775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,457 DEBUG Processing 538/725 atomic regions from SNP 161290 to 161890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,464 DEBUG Processing 701/825 atomic regions from SNP 210169 to 210769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,494 DEBUG Processing 469/689 atomic regions from SNP 140603 to 141203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,554 DEBUG Processing 102/637 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,595 DEBUG Processing 512/710 atomic regions from SNP 153475 to 154075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,680 DEBUG Processing 539/725 atomic regions from SNP 161590 to 162190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,705 DEBUG Processing 702/825 atomic regions from SNP 210469 to 211069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,719 DEBUG Processing 470/689 atomic regions from SNP 140903 to 141503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,746 DEBUG Processing 103/637 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,823 DEBUG Processing 513/710 atomic regions from SNP 153775 to 154375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,903 DEBUG Processing 540/725 atomic regions from SNP 161890 to 162490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,945 DEBUG Processing 703/825 atomic regions from SNP 210769 to 211369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,949 DEBUG Processing 104/637 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:44,960 DEBUG Processing 471/689 atomic regions from SNP 141203 to 141803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,057 DEBUG Processing 514/710 atomic regions from SNP 154075 to 154675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,122 DEBUG Processing 541/725 atomic regions from SNP 162190 to 162790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,154 DEBUG Processing 105/637 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,183 DEBUG Processing 704/825 atomic regions from SNP 211069 to 211669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,192 DEBUG Processing 472/689 atomic regions from SNP 141503 to 142103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,268 DEBUG Processing 515/710 atomic regions from SNP 154375 to 154975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,348 DEBUG Processing 542/725 atomic regions from SNP 162490 to 163090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,361 DEBUG Processing 106/637 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,399 DEBUG chr9 total SNP count: 214037 2025-01-31 09:47:45,399 DEBUG chr9 length: 124595110 2025-01-31 09:47:45,399 DEBUG ----------------------------------------- 2025-01-31 09:47:45,399 INFO Processing SNPs in chr9 2025-01-31 09:47:45,422 DEBUG Processing 705/825 atomic regions from SNP 211369 to 211969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,435 DEBUG Processing 473/689 atomic regions from SNP 141803 to 142403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,479 DEBUG Processing 516/710 atomic regions from SNP 154675 to 155275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,563 DEBUG Processing 543/725 atomic regions from SNP 162790 to 163390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,569 DEBUG Processing 107/637 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,613 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 214037)] 2025-01-31 09:47:45,664 DEBUG Processing 706/825 atomic regions from SNP 211669 to 212269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,666 DEBUG Processing 474/689 atomic regions from SNP 142103 to 142703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,693 DEBUG Processing 517/710 atomic regions from SNP 154975 to 155575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,760 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:45,766 DEBUG Processing 108/637 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,772 DEBUG Processing 544/725 atomic regions from SNP 163090 to 163690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,903 DEBUG Processing 518/710 atomic regions from SNP 155275 to 155875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,903 DEBUG Processing 475/689 atomic regions from SNP 142403 to 143003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,916 DEBUG Processing 707/825 atomic regions from SNP 211969 to 212569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,974 DEBUG Processing 109/637 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:45,987 DEBUG Processing 545/725 atomic regions from SNP 163390 to 163990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,118 DEBUG Processing 519/710 atomic regions from SNP 155575 to 156175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,138 DEBUG Processing 476/689 atomic regions from SNP 142703 to 143303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,183 DEBUG Processing 708/825 atomic regions from SNP 212269 to 212869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,199 DEBUG Processing 110/637 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,208 DEBUG Processing 546/725 atomic regions from SNP 163690 to 164290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,336 DEBUG Processing 520/710 atomic regions from SNP 155875 to 156475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,370 DEBUG Processing 477/689 atomic regions from SNP 143003 to 143603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,415 DEBUG Processing 111/637 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,428 DEBUG Processing 547/725 atomic regions from SNP 163990 to 164590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,431 DEBUG Processing 709/825 atomic regions from SNP 212569 to 213169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,547 DEBUG Processing 521/710 atomic regions from SNP 156175 to 156775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,600 DEBUG Processing 478/689 atomic regions from SNP 143303 to 143903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,622 DEBUG Processing 112/637 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,648 DEBUG Processing 548/725 atomic regions from SNP 164290 to 164890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,695 DEBUG Processing 710/825 atomic regions from SNP 212869 to 213469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,758 DEBUG Processing 522/710 atomic regions from SNP 156475 to 157075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,813 DEBUG Processing 113/637 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:46,827 DEBUG Processing 479/689 atomic regions from SNP 143603 to 144203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,870 DEBUG Processing 549/725 atomic regions from SNP 164590 to 165190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,938 DEBUG Processing 711/825 atomic regions from SNP 213169 to 213769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,968 DEBUG Processing 523/710 atomic regions from SNP 156775 to 157375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,012 DEBUG Processing 114/637 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,047 DEBUG Processing 480/689 atomic regions from SNP 143903 to 144503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,087 DEBUG Processing 550/725 atomic regions from SNP 164890 to 165490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,169 DEBUG Processing 712/825 atomic regions from SNP 213469 to 214069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,181 DEBUG Processing 524/710 atomic regions from SNP 157075 to 157675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,214 DEBUG Processing 115/637 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,265 DEBUG Processing 481/689 atomic regions from SNP 144203 to 144803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,293 DEBUG Processing 551/725 atomic regions from SNP 165190 to 165790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,395 DEBUG Processing 525/710 atomic regions from SNP 157375 to 157975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,396 DEBUG Processing 713/825 atomic regions from SNP 213769 to 214369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,415 DEBUG Processing 116/637 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,487 DEBUG Processing 482/689 atomic regions from SNP 144503 to 145103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,497 DEBUG Processing 552/725 atomic regions from SNP 165490 to 166090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,603 DEBUG Processing 526/710 atomic regions from SNP 157675 to 158275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,611 DEBUG Processing 117/637 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,626 DEBUG Processing 714/825 atomic regions from SNP 214069 to 214669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,702 DEBUG Processing 483/689 atomic regions from SNP 144803 to 145403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,711 DEBUG Processing 553/725 atomic regions from SNP 165790 to 166390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,804 DEBUG Processing 527/710 atomic regions from SNP 157975 to 158575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,810 DEBUG Processing 118/637 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:47,856 DEBUG Processing 715/825 atomic regions from SNP 214369 to 214969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,913 DEBUG Processing 484/689 atomic regions from SNP 145103 to 145703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,924 DEBUG Processing 554/725 atomic regions from SNP 166090 to 166690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,005 DEBUG Processing 119/637 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,010 DEBUG Processing 528/710 atomic regions from SNP 158275 to 158875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,088 DEBUG Processing 716/825 atomic regions from SNP 214669 to 215269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,129 DEBUG Processing 485/689 atomic regions from SNP 145403 to 146003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,130 DEBUG Processing 555/725 atomic regions from SNP 166390 to 166990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,199 DEBUG Processing 120/637 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,216 DEBUG Processing 529/710 atomic regions from SNP 158575 to 159175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,324 DEBUG Processing 717/825 atomic regions from SNP 214969 to 215569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,347 DEBUG Processing 486/689 atomic regions from SNP 145703 to 146303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,357 DEBUG Processing 556/725 atomic regions from SNP 166690 to 167290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,389 DEBUG Processing 121/637 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,421 DEBUG Processing 530/710 atomic regions from SNP 158875 to 159475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,552 DEBUG Processing 718/825 atomic regions from SNP 215269 to 215869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,567 DEBUG Processing 487/689 atomic regions from SNP 146003 to 146603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,568 DEBUG Processing 557/725 atomic regions from SNP 166990 to 167590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,585 DEBUG Processing 122/637 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,625 DEBUG Processing 531/710 atomic regions from SNP 159175 to 159775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,779 DEBUG Processing 558/725 atomic regions from SNP 167290 to 167890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,780 DEBUG Processing 719/825 atomic regions from SNP 215569 to 216169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,783 DEBUG Processing 123/637 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,786 DEBUG Processing 488/689 atomic regions from SNP 146303 to 146903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,836 DEBUG Processing 532/710 atomic regions from SNP 159475 to 160075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,983 DEBUG Processing 124/637 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:48,988 DEBUG Processing 559/725 atomic regions from SNP 167590 to 168190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,010 DEBUG Processing 489/689 atomic regions from SNP 146603 to 147203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,013 DEBUG Processing 720/825 atomic regions from SNP 215869 to 216469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,043 DEBUG Processing 533/710 atomic regions from SNP 159775 to 160375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,185 DEBUG Processing 125/637 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,200 DEBUG Processing 560/725 atomic regions from SNP 167890 to 168490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,235 DEBUG Processing 490/689 atomic regions from SNP 146903 to 147503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,246 DEBUG Processing 721/825 atomic regions from SNP 216169 to 216769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,255 DEBUG Processing 534/710 atomic regions from SNP 160075 to 160675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,382 DEBUG Processing 126/637 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,417 DEBUG Processing 561/725 atomic regions from SNP 168190 to 168790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,465 DEBUG Processing 491/689 atomic regions from SNP 147203 to 147803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,471 DEBUG Processing 535/710 atomic regions from SNP 160375 to 160975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,483 DEBUG Processing 722/825 atomic regions from SNP 216469 to 217069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,577 DEBUG Processing 127/637 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,634 DEBUG Processing 562/725 atomic regions from SNP 168490 to 169090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,691 DEBUG Processing 492/689 atomic regions from SNP 147503 to 148103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,692 DEBUG Processing 536/710 atomic regions from SNP 160675 to 161275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,723 DEBUG Processing 723/825 atomic regions from SNP 216769 to 217369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,780 DEBUG Processing 128/637 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:49,852 DEBUG Processing 563/725 atomic regions from SNP 168790 to 169390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,910 DEBUG Processing 537/710 atomic regions from SNP 160975 to 161575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,914 DEBUG Processing 493/689 atomic regions from SNP 147803 to 148403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,960 DEBUG Processing 724/825 atomic regions from SNP 217069 to 217669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,992 DEBUG Processing 129/637 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,070 DEBUG Processing 564/725 atomic regions from SNP 169090 to 169690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,129 DEBUG Processing 538/710 atomic regions from SNP 161275 to 161875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,137 DEBUG Processing 494/689 atomic regions from SNP 148103 to 148703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,195 DEBUG Processing 725/825 atomic regions from SNP 217369 to 217969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,213 DEBUG Processing 130/637 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,288 DEBUG Processing 565/725 atomic regions from SNP 169390 to 169990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,341 DEBUG Processing 539/710 atomic regions from SNP 161575 to 162175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,354 DEBUG Processing 495/689 atomic regions from SNP 148403 to 149003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,421 DEBUG Processing 131/637 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,423 DEBUG Processing 726/825 atomic regions from SNP 217669 to 218269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,507 DEBUG Processing 566/725 atomic regions from SNP 169690 to 170290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,558 DEBUG Processing 540/710 atomic regions from SNP 161875 to 162475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,578 DEBUG Processing 496/689 atomic regions from SNP 148703 to 149303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,616 DEBUG Processing 132/637 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,650 DEBUG Processing 727/825 atomic regions from SNP 217969 to 218569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,723 DEBUG Processing 567/725 atomic regions from SNP 169990 to 170590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,775 DEBUG Processing 541/710 atomic regions from SNP 162175 to 162775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,804 DEBUG Processing 497/689 atomic regions from SNP 149003 to 149603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,820 DEBUG Processing 133/637 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:50,881 DEBUG Processing 728/825 atomic regions from SNP 218269 to 218869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,935 DEBUG Processing 568/725 atomic regions from SNP 170290 to 170890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,984 DEBUG Processing 542/710 atomic regions from SNP 162475 to 163075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,020 DEBUG Processing 498/689 atomic regions from SNP 149303 to 149903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,046 DEBUG Processing 134/637 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,110 DEBUG Processing 729/825 atomic regions from SNP 218569 to 219169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,149 DEBUG Processing 569/725 atomic regions from SNP 170590 to 171190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,191 DEBUG Processing 543/710 atomic regions from SNP 162775 to 163375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,246 DEBUG Processing 499/689 atomic regions from SNP 149603 to 150203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,270 DEBUG Processing 135/637 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,344 DEBUG Processing 730/825 atomic regions from SNP 218869 to 219469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,371 DEBUG Processing 570/725 atomic regions from SNP 170890 to 171490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,408 DEBUG Processing 544/710 atomic regions from SNP 163075 to 163675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,472 DEBUG Processing 500/689 atomic regions from SNP 149903 to 150503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,475 DEBUG Processing 136/637 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,575 DEBUG Processing 731/825 atomic regions from SNP 219169 to 219769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,588 DEBUG Processing 571/725 atomic regions from SNP 171190 to 171790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,628 DEBUG Processing 545/710 atomic regions from SNP 163375 to 163975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,701 DEBUG Processing 501/689 atomic regions from SNP 150203 to 150803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,702 DEBUG Processing 137/637 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:51,797 DEBUG Processing 732/825 atomic regions from SNP 219469 to 220069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,801 DEBUG Processing 572/725 atomic regions from SNP 171490 to 172090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,843 DEBUG Processing 546/710 atomic regions from SNP 163675 to 164275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,923 DEBUG Processing 502/689 atomic regions from SNP 150503 to 151103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,927 DEBUG Processing 138/637 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,016 DEBUG Processing 573/725 atomic regions from SNP 171790 to 172390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,026 DEBUG Processing 733/825 atomic regions from SNP 219769 to 220369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,052 DEBUG Processing 547/710 atomic regions from SNP 163975 to 164575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,142 DEBUG Processing 503/689 atomic regions from SNP 150803 to 151403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,148 DEBUG Processing 139/637 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,236 DEBUG Processing 574/725 atomic regions from SNP 172090 to 172690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,260 DEBUG Processing 734/825 atomic regions from SNP 220069 to 220669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,267 DEBUG Processing 548/710 atomic regions from SNP 164275 to 164875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,359 DEBUG Processing 504/689 atomic regions from SNP 151103 to 151703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,360 DEBUG Processing 140/637 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,458 DEBUG Processing 575/725 atomic regions from SNP 172390 to 172990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,481 DEBUG Processing 549/710 atomic regions from SNP 164575 to 165175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,489 DEBUG Processing 735/825 atomic regions from SNP 220369 to 220969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,556 DEBUG Processing 141/637 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,575 DEBUG Processing 505/689 atomic regions from SNP 151403 to 152003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,681 DEBUG Processing 576/725 atomic regions from SNP 172690 to 173290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,703 DEBUG Processing 550/710 atomic regions from SNP 164875 to 165475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,715 DEBUG Processing 736/825 atomic regions from SNP 220669 to 221269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,761 DEBUG Processing 142/637 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:52,803 DEBUG Processing 506/689 atomic regions from SNP 151703 to 152303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,899 DEBUG Processing 577/725 atomic regions from SNP 172990 to 173590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,919 DEBUG Processing 551/710 atomic regions from SNP 165175 to 165775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,948 DEBUG Processing 737/825 atomic regions from SNP 220969 to 221569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,980 DEBUG Processing 143/637 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,022 DEBUG Processing 507/689 atomic regions from SNP 152003 to 152603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,116 DEBUG Processing 578/725 atomic regions from SNP 173290 to 173890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,132 DEBUG Processing 552/710 atomic regions from SNP 165475 to 166075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,185 DEBUG Processing 738/825 atomic regions from SNP 221269 to 221869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,202 DEBUG Processing 144/637 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,243 DEBUG Processing 508/689 atomic regions from SNP 152303 to 152903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,335 DEBUG Processing 579/725 atomic regions from SNP 173590 to 174190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,348 DEBUG Processing 553/710 atomic regions from SNP 165775 to 166375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,405 DEBUG Processing 145/637 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,453 DEBUG Processing 739/825 atomic regions from SNP 221569 to 222169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,467 DEBUG Processing 509/689 atomic regions from SNP 152603 to 153203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,547 DEBUG Processing 580/725 atomic regions from SNP 173890 to 174490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,559 DEBUG Processing 554/710 atomic regions from SNP 166075 to 166675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,608 DEBUG Processing 146/637 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,705 DEBUG Processing 510/689 atomic regions from SNP 152903 to 153503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,721 DEBUG Processing 740/825 atomic regions from SNP 221869 to 222469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,766 DEBUG Processing 581/725 atomic regions from SNP 174190 to 174790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,777 DEBUG Processing 555/710 atomic regions from SNP 166375 to 166975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,806 DEBUG Processing 147/637 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:53,937 DEBUG Processing 511/689 atomic regions from SNP 153203 to 153803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,971 DEBUG Processing 741/825 atomic regions from SNP 222169 to 222769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,986 DEBUG Processing 582/725 atomic regions from SNP 174490 to 175090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,997 DEBUG Processing 556/710 atomic regions from SNP 166675 to 167275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,010 DEBUG Processing 148/637 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,166 DEBUG Processing 512/689 atomic regions from SNP 153503 to 154103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,201 DEBUG Processing 583/725 atomic regions from SNP 174790 to 175390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,209 DEBUG Processing 557/710 atomic regions from SNP 166975 to 167575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,216 DEBUG Processing 149/637 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,221 DEBUG Processing 742/825 atomic regions from SNP 222469 to 223069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,400 DEBUG Processing 513/689 atomic regions from SNP 153803 to 154403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,438 DEBUG Processing 584/725 atomic regions from SNP 175090 to 175690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,450 DEBUG Processing 150/637 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,450 DEBUG Processing 558/710 atomic regions from SNP 167275 to 167875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,487 DEBUG Processing 743/825 atomic regions from SNP 222769 to 223369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,641 DEBUG Processing 514/689 atomic regions from SNP 154103 to 154703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,654 DEBUG Processing 585/725 atomic regions from SNP 175390 to 175990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,661 DEBUG Processing 151/637 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,672 DEBUG Processing 559/710 atomic regions from SNP 167575 to 168175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,743 DEBUG Processing 744/825 atomic regions from SNP 223069 to 223669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,947 DEBUG Processing 152/637 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:54,949 DEBUG Processing 515/689 atomic regions from SNP 154403 to 155003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,966 DEBUG Processing 586/725 atomic regions from SNP 175690 to 176290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,986 DEBUG Processing 560/710 atomic regions from SNP 167875 to 168475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,018 DEBUG Processing 745/825 atomic regions from SNP 223369 to 223969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,146 DEBUG Processing 153/637 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,172 DEBUG Processing 516/689 atomic regions from SNP 154703 to 155303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,180 DEBUG Processing 587/725 atomic regions from SNP 175990 to 176590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,216 DEBUG Processing 561/710 atomic regions from SNP 168175 to 168775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,258 DEBUG Processing 746/825 atomic regions from SNP 223669 to 224269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,341 DEBUG Processing 154/637 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,390 DEBUG Processing 517/689 atomic regions from SNP 155003 to 155603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,392 DEBUG Processing 588/725 atomic regions from SNP 176290 to 176890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,425 DEBUG Processing 562/710 atomic regions from SNP 168475 to 169075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,485 DEBUG Processing 747/825 atomic regions from SNP 223969 to 224569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,543 DEBUG Processing 155/637 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,610 DEBUG Processing 589/725 atomic regions from SNP 176590 to 177190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,611 DEBUG Processing 518/689 atomic regions from SNP 155303 to 155903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,638 DEBUG Processing 563/710 atomic regions from SNP 168775 to 169375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,715 DEBUG Processing 748/825 atomic regions from SNP 224269 to 224869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,743 DEBUG Processing 156/637 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,829 DEBUG Processing 590/725 atomic regions from SNP 176890 to 177490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,832 DEBUG Processing 519/689 atomic regions from SNP 155603 to 156203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,881 DEBUG Processing 564/710 atomic regions from SNP 169075 to 169675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,942 DEBUG Processing 157/637 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:55,952 DEBUG Processing 749/825 atomic regions from SNP 224569 to 225169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,048 DEBUG Processing 520/689 atomic regions from SNP 155903 to 156503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,049 DEBUG Processing 591/725 atomic regions from SNP 177190 to 177790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,120 DEBUG Processing 565/710 atomic regions from SNP 169375 to 169975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,139 DEBUG Processing 158/637 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,193 DEBUG Processing 750/825 atomic regions from SNP 224869 to 225469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,266 DEBUG Processing 521/689 atomic regions from SNP 156203 to 156803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,267 DEBUG Processing 592/725 atomic regions from SNP 177490 to 178090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,344 DEBUG Processing 159/637 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,360 DEBUG Processing 566/710 atomic regions from SNP 169675 to 170275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,444 DEBUG Processing 751/825 atomic regions from SNP 225169 to 225769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,486 DEBUG Processing 593/725 atomic regions from SNP 177790 to 178390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,489 DEBUG Processing 522/689 atomic regions from SNP 156503 to 157103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,561 DEBUG Processing 160/637 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,587 DEBUG Processing 567/710 atomic regions from SNP 169975 to 170575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,684 DEBUG Processing 752/825 atomic regions from SNP 225469 to 226069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,695 DEBUG Processing 594/725 atomic regions from SNP 178090 to 178690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,711 DEBUG Processing 523/689 atomic regions from SNP 156803 to 157403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,756 DEBUG Processing 161/637 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:56,824 DEBUG Processing 568/710 atomic regions from SNP 170275 to 170875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,907 DEBUG Processing 595/725 atomic regions from SNP 178390 to 178990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,914 DEBUG Processing 753/825 atomic regions from SNP 225769 to 226369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,931 DEBUG Processing 524/689 atomic regions from SNP 157103 to 157703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,954 DEBUG Processing 162/637 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,055 DEBUG Processing 569/710 atomic regions from SNP 170575 to 171175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,129 DEBUG Processing 596/725 atomic regions from SNP 178690 to 179290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,151 DEBUG Processing 754/825 atomic regions from SNP 226069 to 226669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,157 DEBUG Processing 163/637 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,158 DEBUG Processing 525/689 atomic regions from SNP 157403 to 158003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,278 DEBUG Processing 570/710 atomic regions from SNP 170875 to 171475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,344 DEBUG Processing 597/725 atomic regions from SNP 178990 to 179590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,358 DEBUG Processing 164/637 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,385 DEBUG Processing 526/689 atomic regions from SNP 157703 to 158303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,388 DEBUG Processing 755/825 atomic regions from SNP 226369 to 226969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,479 DEBUG Processing 571/710 atomic regions from SNP 171175 to 171775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,556 DEBUG Processing 165/637 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,561 DEBUG Processing 598/725 atomic regions from SNP 179290 to 179890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,606 DEBUG Processing 527/689 atomic regions from SNP 158003 to 158603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,616 DEBUG Processing 756/825 atomic regions from SNP 226669 to 227269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,680 DEBUG Processing 572/710 atomic regions from SNP 171475 to 172075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,753 DEBUG Processing 166/637 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,776 DEBUG Processing 599/725 atomic regions from SNP 179590 to 180190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,830 DEBUG Processing 528/689 atomic regions from SNP 158303 to 158903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,847 DEBUG Processing 757/825 atomic regions from SNP 226969 to 227569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,890 DEBUG Processing 573/710 atomic regions from SNP 171775 to 172375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,947 DEBUG Processing 167/637 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:57,989 DEBUG Processing 600/725 atomic regions from SNP 179890 to 180490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,047 DEBUG Processing 529/689 atomic regions from SNP 158603 to 159203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,073 DEBUG Processing 758/825 atomic regions from SNP 227269 to 227869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,098 DEBUG Processing 574/710 atomic regions from SNP 172075 to 172675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,144 DEBUG Processing 168/637 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,198 DEBUG Processing 601/725 atomic regions from SNP 180190 to 180790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,263 DEBUG Processing 530/689 atomic regions from SNP 158903 to 159503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,298 DEBUG Processing 759/825 atomic regions from SNP 227569 to 228169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,317 DEBUG Processing 575/710 atomic regions from SNP 172375 to 172975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,339 DEBUG Processing 169/637 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,420 DEBUG Processing 602/725 atomic regions from SNP 180490 to 181090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,478 DEBUG Processing 531/689 atomic regions from SNP 159203 to 159803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,520 DEBUG Processing 760/825 atomic regions from SNP 227869 to 228469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,526 DEBUG Processing 576/710 atomic regions from SNP 172675 to 173275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,531 DEBUG Processing 170/637 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,630 DEBUG Processing 603/725 atomic regions from SNP 180790 to 181390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,696 DEBUG Processing 532/689 atomic regions from SNP 159503 to 160103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,724 DEBUG Processing 171/637 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,744 DEBUG Processing 577/710 atomic regions from SNP 172975 to 173575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,750 DEBUG Processing 761/825 atomic regions from SNP 228169 to 228769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,836 DEBUG Processing 604/725 atomic regions from SNP 181090 to 181690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,914 DEBUG Processing 533/689 atomic regions from SNP 159803 to 160403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,922 DEBUG Processing 172/637 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:58,974 DEBUG Processing 578/710 atomic regions from SNP 173275 to 173875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,976 DEBUG Processing 762/825 atomic regions from SNP 228469 to 229069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,040 DEBUG Processing 605/725 atomic regions from SNP 181390 to 181990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,116 DEBUG Processing 173/637 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,129 DEBUG Processing 534/689 atomic regions from SNP 160103 to 160703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,186 DEBUG Processing 579/710 atomic regions from SNP 173575 to 174175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,204 DEBUG Processing 763/825 atomic regions from SNP 228769 to 229369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,247 DEBUG Processing 606/725 atomic regions from SNP 181690 to 182290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,308 DEBUG Processing 174/637 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,353 DEBUG Processing 535/689 atomic regions from SNP 160403 to 161003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,395 DEBUG Processing 580/710 atomic regions from SNP 173875 to 174475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,422 DEBUG Processing 764/825 atomic regions from SNP 229069 to 229669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,459 DEBUG Processing 607/725 atomic regions from SNP 181990 to 182590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,503 DEBUG Processing 175/637 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,569 DEBUG Processing 536/689 atomic regions from SNP 160703 to 161303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,600 DEBUG Processing 581/710 atomic regions from SNP 174175 to 174775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,645 DEBUG Processing 765/825 atomic regions from SNP 229369 to 229969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,675 DEBUG Processing 608/725 atomic regions from SNP 182290 to 182890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,695 DEBUG Processing 176/637 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,784 DEBUG Processing 537/689 atomic regions from SNP 161003 to 161603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,799 DEBUG Processing 582/710 atomic regions from SNP 174475 to 175075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,866 DEBUG Processing 766/825 atomic regions from SNP 229669 to 230269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,885 DEBUG Processing 177/637 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:47:59,887 DEBUG Processing 609/725 atomic regions from SNP 182590 to 183190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,998 DEBUG Processing 538/689 atomic regions from SNP 161303 to 161903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,003 DEBUG Processing 583/710 atomic regions from SNP 174775 to 175375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,080 DEBUG Processing 178/637 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,093 DEBUG Processing 767/825 atomic regions from SNP 229969 to 230569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,094 DEBUG Processing 610/725 atomic regions from SNP 182890 to 183490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,213 DEBUG Processing 584/710 atomic regions from SNP 175075 to 175675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,242 DEBUG Processing 539/689 atomic regions from SNP 161603 to 162203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,279 DEBUG Processing 179/637 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,303 DEBUG Processing 611/725 atomic regions from SNP 183190 to 183790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,317 DEBUG Processing 768/825 atomic regions from SNP 230269 to 230869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,417 DEBUG Processing 585/710 atomic regions from SNP 175375 to 175975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,473 DEBUG Processing 540/689 atomic regions from SNP 161903 to 162503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,478 DEBUG Processing 180/637 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,521 DEBUG Processing 612/725 atomic regions from SNP 183490 to 184090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,547 DEBUG Processing 769/825 atomic regions from SNP 230569 to 231169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,612 DEBUG Processing 586/710 atomic regions from SNP 175675 to 176275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,673 DEBUG Processing 181/637 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,689 DEBUG Processing 541/689 atomic regions from SNP 162203 to 162803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,739 DEBUG Processing 613/725 atomic regions from SNP 183790 to 184390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,773 DEBUG Processing 770/825 atomic regions from SNP 230869 to 231469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,814 DEBUG Processing 587/710 atomic regions from SNP 175975 to 176575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,864 DEBUG Processing 182/637 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:00,906 DEBUG Processing 542/689 atomic regions from SNP 162503 to 163103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,951 DEBUG Processing 614/725 atomic regions from SNP 184090 to 184690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,000 DEBUG Processing 771/825 atomic regions from SNP 231169 to 231769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,024 DEBUG Processing 588/710 atomic regions from SNP 176275 to 176875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,055 DEBUG Processing 183/637 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,119 DEBUG Processing 543/689 atomic regions from SNP 162803 to 163403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,157 DEBUG Processing 615/725 atomic regions from SNP 184390 to 184990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,228 DEBUG Processing 772/825 atomic regions from SNP 231469 to 232069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,234 DEBUG Processing 589/710 atomic regions from SNP 176575 to 177175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,251 DEBUG Processing 184/637 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,328 DEBUG Processing 544/689 atomic regions from SNP 163103 to 163703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,368 DEBUG Processing 616/725 atomic regions from SNP 184690 to 185290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,437 DEBUG Processing 590/710 atomic regions from SNP 176875 to 177475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,452 DEBUG Processing 185/637 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,460 DEBUG Processing 773/825 atomic regions from SNP 231769 to 232369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,542 DEBUG Processing 545/689 atomic regions from SNP 163403 to 164003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,583 DEBUG Processing 617/725 atomic regions from SNP 184990 to 185590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,646 DEBUG Processing 591/710 atomic regions from SNP 177175 to 177775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,649 DEBUG Processing 186/637 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,691 DEBUG Processing 774/825 atomic regions from SNP 232069 to 232669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,762 DEBUG Processing 546/689 atomic regions from SNP 163703 to 164303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,798 DEBUG Processing 618/725 atomic regions from SNP 185290 to 185890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,847 DEBUG Processing 187/637 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:01,866 DEBUG Processing 592/710 atomic regions from SNP 177475 to 178075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,925 DEBUG Processing 775/825 atomic regions from SNP 232369 to 232969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,993 DEBUG Processing 547/689 atomic regions from SNP 164003 to 164603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,008 DEBUG Processing 619/725 atomic regions from SNP 185590 to 186190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,039 DEBUG Processing 188/637 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,073 DEBUG Processing 593/710 atomic regions from SNP 177775 to 178375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,149 DEBUG Processing 776/825 atomic regions from SNP 232669 to 233269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,212 DEBUG Processing 548/689 atomic regions from SNP 164303 to 164903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,218 DEBUG Processing 620/725 atomic regions from SNP 185890 to 186490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,235 DEBUG Processing 189/637 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,274 DEBUG Processing 594/710 atomic regions from SNP 178075 to 178675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,369 DEBUG Processing 777/825 atomic regions from SNP 232969 to 233569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,424 DEBUG Processing 190/637 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,427 DEBUG Processing 549/689 atomic regions from SNP 164603 to 165203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,434 DEBUG Processing 621/725 atomic regions from SNP 186190 to 186790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,477 DEBUG Processing 595/710 atomic regions from SNP 178375 to 178975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,595 DEBUG Processing 778/825 atomic regions from SNP 233269 to 233869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,618 DEBUG Processing 191/637 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,643 DEBUG Processing 550/689 atomic regions from SNP 164903 to 165503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,648 DEBUG Processing 622/725 atomic regions from SNP 186490 to 187090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,689 DEBUG Processing 596/710 atomic regions from SNP 178675 to 179275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,818 DEBUG Processing 192/637 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:02,827 DEBUG Processing 779/825 atomic regions from SNP 233569 to 234169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,859 DEBUG Processing 623/725 atomic regions from SNP 186790 to 187390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,859 DEBUG Processing 551/689 atomic regions from SNP 165203 to 165803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,891 DEBUG Processing 597/710 atomic regions from SNP 178975 to 179575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,018 DEBUG Processing 193/637 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,061 DEBUG Processing 780/825 atomic regions from SNP 233869 to 234469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,074 DEBUG Processing 624/725 atomic regions from SNP 187090 to 187690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,081 DEBUG Processing 552/689 atomic regions from SNP 165503 to 166103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,098 DEBUG Processing 598/710 atomic regions from SNP 179275 to 179875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,210 DEBUG Processing 194/637 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,295 DEBUG Processing 781/825 atomic regions from SNP 234169 to 234769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,296 DEBUG Processing 625/725 atomic regions from SNP 187390 to 187990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,311 DEBUG Processing 553/689 atomic regions from SNP 165803 to 166403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,316 DEBUG Processing 599/710 atomic regions from SNP 179575 to 180175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,399 DEBUG Processing 195/637 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,510 DEBUG Processing 626/725 atomic regions from SNP 187690 to 188290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,520 DEBUG Processing 782/825 atomic regions from SNP 234469 to 235069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,527 DEBUG Processing 554/689 atomic regions from SNP 166103 to 166703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,541 DEBUG Processing 600/710 atomic regions from SNP 179875 to 180475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,600 DEBUG Processing 196/637 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,723 DEBUG Processing 627/725 atomic regions from SNP 187990 to 188590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,741 DEBUG Processing 783/825 atomic regions from SNP 234769 to 235369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,747 DEBUG Processing 555/689 atomic regions from SNP 166403 to 167003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,764 DEBUG Processing 601/710 atomic regions from SNP 180175 to 180775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,805 DEBUG Processing 197/637 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:03,934 DEBUG Processing 628/725 atomic regions from SNP 188290 to 188890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,960 DEBUG Processing 556/689 atomic regions from SNP 166703 to 167303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,965 DEBUG Processing 784/825 atomic regions from SNP 235069 to 235669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,997 DEBUG Processing 602/710 atomic regions from SNP 180475 to 181075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,997 DEBUG Processing 198/637 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,151 DEBUG Processing 629/725 atomic regions from SNP 188590 to 189190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,184 DEBUG Processing 557/689 atomic regions from SNP 167003 to 167603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,197 DEBUG Processing 199/637 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,199 DEBUG Processing 785/825 atomic regions from SNP 235369 to 235969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,212 DEBUG Processing 603/710 atomic regions from SNP 180775 to 181375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,363 DEBUG Processing 630/725 atomic regions from SNP 188890 to 189490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,404 DEBUG Processing 200/637 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,411 DEBUG Processing 558/689 atomic regions from SNP 167303 to 167903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,435 DEBUG Processing 604/710 atomic regions from SNP 181075 to 181675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,435 DEBUG Processing 786/825 atomic regions from SNP 235669 to 236269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,571 DEBUG Processing 631/725 atomic regions from SNP 189190 to 189790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,605 DEBUG Processing 201/637 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,636 DEBUG Processing 559/689 atomic regions from SNP 167603 to 168203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,662 DEBUG Processing 605/710 atomic regions from SNP 181375 to 181975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,673 DEBUG Processing 787/825 atomic regions from SNP 235969 to 236569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,779 DEBUG Processing 632/725 atomic regions from SNP 189490 to 190090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,795 DEBUG Processing 202/637 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:04,852 DEBUG Processing 560/689 atomic regions from SNP 167903 to 168503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,898 DEBUG Processing 606/710 atomic regions from SNP 181675 to 182275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,903 DEBUG Processing 788/825 atomic regions from SNP 236269 to 236869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,987 DEBUG Processing 633/725 atomic regions from SNP 189790 to 190390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,003 DEBUG Processing 203/637 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,065 DEBUG Processing 561/689 atomic regions from SNP 168203 to 168803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,104 DEBUG Processing 607/710 atomic regions from SNP 181975 to 182575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,128 DEBUG Processing 789/825 atomic regions from SNP 236569 to 237169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,198 DEBUG Processing 634/725 atomic regions from SNP 190090 to 190690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,204 DEBUG Processing 204/637 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,280 DEBUG Processing 562/689 atomic regions from SNP 168503 to 169103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,308 DEBUG Processing 608/710 atomic regions from SNP 182275 to 182875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,349 DEBUG Processing 790/825 atomic regions from SNP 236869 to 237469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,397 DEBUG Processing 205/637 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,406 DEBUG Processing 635/725 atomic regions from SNP 190390 to 190990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,497 DEBUG Processing 563/689 atomic regions from SNP 168803 to 169403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,513 DEBUG Processing 609/710 atomic regions from SNP 182575 to 183175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,581 DEBUG Processing 791/825 atomic regions from SNP 237169 to 237769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,593 DEBUG Processing 206/637 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,612 DEBUG Processing 636/725 atomic regions from SNP 190690 to 191290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,710 DEBUG Processing 564/689 atomic regions from SNP 169103 to 169703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,717 DEBUG Processing 610/710 atomic regions from SNP 182875 to 183475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,793 DEBUG Processing 207/637 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:05,811 DEBUG Processing 792/825 atomic regions from SNP 237469 to 238069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,843 DEBUG Processing 637/725 atomic regions from SNP 190990 to 191590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,913 DEBUG Processing 611/710 atomic regions from SNP 183175 to 183775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,920 DEBUG Processing 565/689 atomic regions from SNP 169403 to 170003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,991 DEBUG Processing 208/637 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,043 DEBUG Processing 793/825 atomic regions from SNP 237769 to 238369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,059 DEBUG Processing 638/725 atomic regions from SNP 191290 to 191890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,112 DEBUG Processing 612/710 atomic regions from SNP 183475 to 184075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,137 DEBUG Processing 566/689 atomic regions from SNP 169703 to 170303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,187 DEBUG Processing 209/637 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,274 DEBUG Processing 794/825 atomic regions from SNP 238069 to 238669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,282 DEBUG Processing 639/725 atomic regions from SNP 191590 to 192190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,321 DEBUG Processing 613/710 atomic regions from SNP 183775 to 184375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,355 DEBUG Processing 567/689 atomic regions from SNP 170003 to 170603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,379 DEBUG Processing 210/637 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,505 DEBUG Processing 640/725 atomic regions from SNP 191890 to 192490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,508 DEBUG Processing 795/825 atomic regions from SNP 238369 to 238969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,537 DEBUG Processing 614/710 atomic regions from SNP 184075 to 184675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,574 DEBUG Processing 211/637 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,581 DEBUG Processing 568/689 atomic regions from SNP 170303 to 170903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,723 DEBUG Processing 641/725 atomic regions from SNP 192190 to 192790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,742 DEBUG Processing 796/825 atomic regions from SNP 238669 to 239269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,751 DEBUG Processing 615/710 atomic regions from SNP 184375 to 184975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,776 DEBUG Processing 212/637 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:06,805 DEBUG Processing 569/689 atomic regions from SNP 170603 to 171203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,947 DEBUG Processing 642/725 atomic regions from SNP 192490 to 193090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,972 DEBUG Processing 616/710 atomic regions from SNP 184675 to 185275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,980 DEBUG Processing 797/825 atomic regions from SNP 238969 to 239569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,983 DEBUG Processing 213/637 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,034 DEBUG Processing 570/689 atomic regions from SNP 170903 to 171503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,174 DEBUG Processing 643/725 atomic regions from SNP 192790 to 193390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,191 DEBUG Processing 617/710 atomic regions from SNP 184975 to 185575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,198 DEBUG Processing 214/637 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,219 DEBUG Processing 798/825 atomic regions from SNP 239269 to 239869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,259 DEBUG Processing 571/689 atomic regions from SNP 171203 to 171803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,397 DEBUG Processing 644/725 atomic regions from SNP 193090 to 193690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,407 DEBUG Processing 618/710 atomic regions from SNP 185275 to 185875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,410 DEBUG Processing 215/637 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,449 DEBUG Processing 799/825 atomic regions from SNP 239569 to 240169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,483 DEBUG Processing 572/689 atomic regions from SNP 171503 to 172103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,622 DEBUG Processing 645/725 atomic regions from SNP 193390 to 193990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,626 DEBUG Processing 216/637 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,627 DEBUG Processing 619/710 atomic regions from SNP 185575 to 186175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,679 DEBUG Processing 800/825 atomic regions from SNP 239869 to 240469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,718 DEBUG Processing 573/689 atomic regions from SNP 171803 to 172403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,837 DEBUG Processing 217/637 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:07,845 DEBUG Processing 620/710 atomic regions from SNP 185875 to 186475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,847 DEBUG Processing 646/725 atomic regions from SNP 193690 to 194290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,911 DEBUG Processing 801/825 atomic regions from SNP 240169 to 240769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,966 DEBUG Processing 574/689 atomic regions from SNP 172103 to 172703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,033 DEBUG Processing 218/637 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,061 DEBUG Processing 621/710 atomic regions from SNP 186175 to 186775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,069 DEBUG Processing 647/725 atomic regions from SNP 193990 to 194590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,139 DEBUG Processing 802/825 atomic regions from SNP 240469 to 241069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,209 DEBUG Processing 575/689 atomic regions from SNP 172403 to 173003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,236 DEBUG Processing 219/637 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,275 DEBUG Processing 622/710 atomic regions from SNP 186475 to 187075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,305 DEBUG Processing 648/725 atomic regions from SNP 194290 to 194890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,367 DEBUG Processing 803/825 atomic regions from SNP 240769 to 241369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,437 DEBUG Processing 220/637 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,466 DEBUG Processing 576/689 atomic regions from SNP 172703 to 173303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,495 DEBUG Processing 623/710 atomic regions from SNP 186775 to 187375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,534 DEBUG Processing 649/725 atomic regions from SNP 194590 to 195190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,592 DEBUG Processing 804/825 atomic regions from SNP 241069 to 241669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,634 DEBUG Processing 221/637 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,705 DEBUG Processing 624/710 atomic regions from SNP 187075 to 187675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,714 DEBUG Processing 577/689 atomic regions from SNP 173003 to 173603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,752 DEBUG Processing 650/725 atomic regions from SNP 194890 to 195490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,819 DEBUG Processing 805/825 atomic regions from SNP 241369 to 241969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,829 DEBUG Processing 222/637 atomic regions from SNP 66521 to 67122 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:08,912 DEBUG Processing 625/710 atomic regions from SNP 187375 to 187975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,959 DEBUG Processing 578/689 atomic regions from SNP 173303 to 173903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,963 DEBUG Processing 651/725 atomic regions from SNP 195190 to 195790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,024 DEBUG Processing 223/637 atomic regions from SNP 66822 to 67423 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,042 DEBUG Processing 806/825 atomic regions from SNP 241669 to 242269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,120 DEBUG Processing 626/710 atomic regions from SNP 187675 to 188275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,199 DEBUG Processing 652/725 atomic regions from SNP 195490 to 196090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,209 DEBUG Processing 579/689 atomic regions from SNP 173603 to 174203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,217 DEBUG Processing 224/637 atomic regions from SNP 67123 to 67724 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,266 DEBUG Processing 807/825 atomic regions from SNP 241969 to 242569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,328 DEBUG Processing 627/710 atomic regions from SNP 187975 to 188575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,415 DEBUG Processing 653/725 atomic regions from SNP 195790 to 196390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,418 DEBUG Processing 225/637 atomic regions from SNP 67424 to 68025 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,459 DEBUG Processing 580/689 atomic regions from SNP 173903 to 174503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,494 DEBUG Processing 808/825 atomic regions from SNP 242269 to 242869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,537 DEBUG Processing 628/710 atomic regions from SNP 188275 to 188875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,614 DEBUG Processing 226/637 atomic regions from SNP 67725 to 68326 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,626 DEBUG Processing 654/725 atomic regions from SNP 196090 to 196690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,713 DEBUG Processing 581/689 atomic regions from SNP 174203 to 174803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,731 DEBUG Processing 809/825 atomic regions from SNP 242569 to 243169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,757 DEBUG Processing 629/710 atomic regions from SNP 188575 to 189175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,815 DEBUG Processing 227/637 atomic regions from SNP 68026 to 68627 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:09,842 DEBUG Processing 655/725 atomic regions from SNP 196390 to 196990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,962 DEBUG Processing 810/825 atomic regions from SNP 242869 to 243469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,966 DEBUG Processing 582/689 atomic regions from SNP 174503 to 175103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,972 DEBUG Processing 630/710 atomic regions from SNP 188875 to 189475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,019 DEBUG Processing 228/637 atomic regions from SNP 68327 to 68928 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,061 DEBUG Processing 656/725 atomic regions from SNP 196690 to 197290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,182 DEBUG Processing 631/710 atomic regions from SNP 189175 to 189775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,194 DEBUG Processing 811/825 atomic regions from SNP 243169 to 243769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,215 DEBUG Processing 583/689 atomic regions from SNP 174803 to 175403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,224 DEBUG Processing 229/637 atomic regions from SNP 68628 to 69229 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,275 DEBUG Processing 657/725 atomic regions from SNP 196990 to 197590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,396 DEBUG Processing 632/710 atomic regions from SNP 189475 to 190075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,431 DEBUG Processing 230/637 atomic regions from SNP 68929 to 69530 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,431 DEBUG Processing 812/825 atomic regions from SNP 243469 to 244069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,446 DEBUG Processing 584/689 atomic regions from SNP 175103 to 175703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,493 DEBUG Processing 658/725 atomic regions from SNP 197290 to 197890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,611 DEBUG Processing 633/710 atomic regions from SNP 189775 to 190375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,643 DEBUG Processing 231/637 atomic regions from SNP 69230 to 69831 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,682 DEBUG Processing 813/825 atomic regions from SNP 243769 to 244369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,697 DEBUG Processing 585/689 atomic regions from SNP 175403 to 176003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,708 DEBUG Processing 659/725 atomic regions from SNP 197590 to 198190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,828 DEBUG Processing 634/710 atomic regions from SNP 190075 to 190675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,847 DEBUG Processing 232/637 atomic regions from SNP 69531 to 70132 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:10,926 DEBUG Processing 814/825 atomic regions from SNP 244069 to 244669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,937 DEBUG Processing 660/725 atomic regions from SNP 197890 to 198490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,948 DEBUG Processing 586/689 atomic regions from SNP 175703 to 176303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,040 DEBUG Processing 233/637 atomic regions from SNP 69832 to 70433 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,060 DEBUG Processing 635/710 atomic regions from SNP 190375 to 190975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,151 DEBUG Processing 661/725 atomic regions from SNP 198190 to 198790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,160 DEBUG Processing 815/825 atomic regions from SNP 244369 to 244969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,180 DEBUG Processing 587/689 atomic regions from SNP 176003 to 176603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,239 DEBUG Processing 234/637 atomic regions from SNP 70133 to 70734 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,293 DEBUG Processing 636/710 atomic regions from SNP 190675 to 191275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,367 DEBUG Processing 662/725 atomic regions from SNP 198490 to 199090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,388 DEBUG Processing 816/825 atomic regions from SNP 244669 to 245269 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,440 DEBUG Processing 588/689 atomic regions from SNP 176303 to 176903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,463 DEBUG Processing 235/637 atomic regions from SNP 70434 to 71035 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,534 DEBUG Processing 637/710 atomic regions from SNP 190975 to 191575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,538 DEBUG Segmenting atomic regions: 2025-01-31 09:48:11,582 DEBUG Processing 663/725 atomic regions from SNP 198790 to 199390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,626 DEBUG Processing 817/825 atomic regions from SNP 244969 to 245569 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,632 DEBUG Processing 1/712 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,660 DEBUG Processing 589/689 atomic regions from SNP 176603 to 177203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,688 DEBUG Processing 236/637 atomic regions from SNP 70735 to 71336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,766 DEBUG Processing 638/710 atomic regions from SNP 191275 to 191875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,811 DEBUG Processing 664/725 atomic regions from SNP 199090 to 199690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,850 DEBUG Processing 2/712 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,867 DEBUG Processing 818/825 atomic regions from SNP 245269 to 245869 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,889 DEBUG Processing 590/689 atomic regions from SNP 176903 to 177503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,913 DEBUG Processing 237/637 atomic regions from SNP 71036 to 71637 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:11,974 DEBUG Processing 639/710 atomic regions from SNP 191575 to 192175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,029 DEBUG Processing 665/725 atomic regions from SNP 199390 to 199990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,066 DEBUG Processing 3/712 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,113 DEBUG Processing 819/825 atomic regions from SNP 245569 to 246169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,126 DEBUG Processing 591/689 atomic regions from SNP 177203 to 177803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,130 DEBUG Processing 238/637 atomic regions from SNP 71337 to 71938 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,186 DEBUG Processing 640/710 atomic regions from SNP 191875 to 192475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,248 DEBUG Processing 666/725 atomic regions from SNP 199690 to 200290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,278 DEBUG Processing 4/712 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,339 DEBUG Processing 239/637 atomic regions from SNP 71638 to 72239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,351 DEBUG Processing 820/825 atomic regions from SNP 245869 to 246469 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,356 DEBUG Processing 592/689 atomic regions from SNP 177503 to 178103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,400 DEBUG Processing 641/710 atomic regions from SNP 192175 to 192775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,465 DEBUG Processing 667/725 atomic regions from SNP 199990 to 200590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,492 DEBUG Processing 5/712 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,546 DEBUG Processing 240/637 atomic regions from SNP 71939 to 72540 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,582 DEBUG Processing 593/689 atomic regions from SNP 177803 to 178403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,588 DEBUG Processing 821/825 atomic regions from SNP 246169 to 246769 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,614 DEBUG Processing 642/710 atomic regions from SNP 192475 to 193075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,685 DEBUG Processing 668/725 atomic regions from SNP 200290 to 200890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,703 DEBUG Processing 6/712 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,773 DEBUG Processing 241/637 atomic regions from SNP 72240 to 72841 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:12,816 DEBUG Processing 594/689 atomic regions from SNP 178103 to 178703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,827 DEBUG Processing 643/710 atomic regions from SNP 192775 to 193375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,830 DEBUG Processing 822/825 atomic regions from SNP 246469 to 247069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,906 DEBUG Processing 669/725 atomic regions from SNP 200590 to 201190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,919 DEBUG Processing 7/712 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,015 DEBUG Processing 242/637 atomic regions from SNP 72541 to 73142 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,037 DEBUG Processing 644/710 atomic regions from SNP 193075 to 193675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,049 DEBUG Processing 595/689 atomic regions from SNP 178403 to 179003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,073 DEBUG Processing 823/825 atomic regions from SNP 246769 to 247369 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,124 DEBUG Processing 670/725 atomic regions from SNP 200890 to 201490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,128 DEBUG Processing 8/712 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,247 DEBUG Processing 243/637 atomic regions from SNP 72842 to 73443 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,250 DEBUG Processing 645/710 atomic regions from SNP 193375 to 193975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,280 DEBUG Processing 596/689 atomic regions from SNP 178703 to 179303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,313 DEBUG Processing 824/825 atomic regions from SNP 247069 to 247669 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,339 DEBUG Processing 9/712 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,341 DEBUG Processing 671/725 atomic regions from SNP 201190 to 201790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,454 DEBUG Processing 244/637 atomic regions from SNP 73143 to 73744 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,468 DEBUG Processing 646/710 atomic regions from SNP 193675 to 194275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,509 DEBUG Processing 597/689 atomic regions from SNP 179003 to 179603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,552 DEBUG Processing 825/825 atomic regions from SNP 247369 to 247969 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,553 DEBUG Processing 10/712 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,559 DEBUG Processing 672/725 atomic regions from SNP 201490 to 202090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,653 DEBUG Processing 245/637 atomic regions from SNP 73444 to 74045 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,679 DEBUG Processing 647/710 atomic regions from SNP 193975 to 194575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,683 DEBUG Unique SNPs positions in subchromosome 1: 247970 2025-01-31 09:48:13,733 DEBUG Processing 598/689 atomic regions from SNP 179303 to 179903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,768 DEBUG Processing 11/712 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,776 DEBUG Processing 673/725 atomic regions from SNP 201790 to 202390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,853 DEBUG Processing 246/637 atomic regions from SNP 73745 to 74346 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:13,889 DEBUG Processing 648/710 atomic regions from SNP 194275 to 194875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,959 DEBUG Processing 599/689 atomic regions from SNP 179603 to 180203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,982 DEBUG Processing 12/712 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,995 DEBUG Processing 674/725 atomic regions from SNP 202090 to 202690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,054 DEBUG Processing 247/637 atomic regions from SNP 74046 to 74647 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,099 DEBUG Processing 649/710 atomic regions from SNP 194575 to 195175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,192 DEBUG Processing 600/689 atomic regions from SNP 179903 to 180503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,197 DEBUG Processing 13/712 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,213 DEBUG Processing 675/725 atomic regions from SNP 202390 to 202990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,255 DEBUG Processing 248/637 atomic regions from SNP 74347 to 74948 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,319 DEBUG Processing 650/710 atomic regions from SNP 194875 to 195475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,415 DEBUG Processing 14/712 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,429 DEBUG Processing 601/689 atomic regions from SNP 180203 to 180803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,437 DEBUG Processing 676/725 atomic regions from SNP 202690 to 203290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,460 DEBUG Processing 249/637 atomic regions from SNP 74648 to 75249 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,550 DEBUG Processing 651/710 atomic regions from SNP 195175 to 195775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,627 DEBUG Processing 15/712 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,655 DEBUG Processing 677/725 atomic regions from SNP 202990 to 203590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,657 DEBUG Processing 602/689 atomic regions from SNP 180503 to 181103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,666 DEBUG Processing 250/637 atomic regions from SNP 74949 to 75550 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,778 DEBUG Processing 652/710 atomic regions from SNP 195475 to 196075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,837 DEBUG Processing 16/712 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,874 DEBUG Processing 678/725 atomic regions from SNP 203290 to 203890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,887 DEBUG Processing 251/637 atomic regions from SNP 75250 to 75851 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:14,891 DEBUG Processing 603/689 atomic regions from SNP 180803 to 181403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,004 DEBUG Processing 653/710 atomic regions from SNP 195775 to 196375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,045 DEBUG Processing 17/712 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,085 DEBUG Processing 679/725 atomic regions from SNP 203590 to 204190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,116 DEBUG Processing 604/689 atomic regions from SNP 181103 to 181703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,121 DEBUG Processing 252/637 atomic regions from SNP 75551 to 76152 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:15,237 DEBUG Processing 654/710 atomic regions from SNP 196075 to 196675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,254 DEBUG Processing 18/712 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,294 DEBUG Processing 680/725 atomic regions from SNP 203890 to 204490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,336 DEBUG Processing 605/689 atomic regions from SNP 181403 to 182003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,352 DEBUG Processing 253/637 atomic regions from SNP 75852 to 76453 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:15,471 DEBUG Processing 655/710 atomic regions from SNP 196375 to 196975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,473 DEBUG Processing 19/712 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,511 DEBUG Processing 681/725 atomic regions from SNP 204190 to 204790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,556 DEBUG Processing 606/689 atomic regions from SNP 181703 to 182303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,577 DEBUG Processing 254/637 atomic regions from SNP 76153 to 76754 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:15,692 DEBUG Processing 20/712 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,720 DEBUG Processing 656/710 atomic regions from SNP 196675 to 197275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,735 DEBUG Processing 682/725 atomic regions from SNP 204490 to 205090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,783 DEBUG Processing 607/689 atomic regions from SNP 182003 to 182603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,809 DEBUG Processing 255/637 atomic regions from SNP 76454 to 77055 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:15,903 DEBUG Processing 21/712 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,963 DEBUG Processing 683/725 atomic regions from SNP 204790 to 205390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,973 DEBUG Processing 657/710 atomic regions from SNP 196975 to 197575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,007 DEBUG Processing 608/689 atomic regions from SNP 182303 to 182903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,036 DEBUG Processing 256/637 atomic regions from SNP 76755 to 77356 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,063 DEBUG Subchromosome time: 226.8542658740189, subchromosome SNPs: 247970 2025-01-31 09:48:16,063 DEBUG Estimated BADs: [0.99, 3.97, 1.99, 7.94, 1.99, 15.88, 1.99, 5.96, 1.99, 0.66, 5.96, 1.99, 0.99, 9.93, 3.97, 1.99] SNP counts: [41121, 12551, 5486, 2063, 13423, 323, 37827, 3269, 3590, 13092, 14831, 31754, 5435, 1507, 26596, 35102] SNP IDs counts: [41121, 12551, 5486, 2063, 13423, 323, 37827, 3269, 3590, 13092, 14831, 31754, 5435, 1507, 26596, 35102] Critical gap: 675995bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 28.39Mbp, 35.13Mbp, 38.29Mbp, 39.37Mbp, 47.59Mbp, 47.90Mbp, 70.71Mbp, 72.44Mbp, 74.59Mbp, 83.00Mbp, 91.11Mbp, 109.41Mbp, 112.90Mbp, 113.68Mbp, 128.76Mbp, 149.74Mbp] 2025-01-31 09:48:16,063 DEBUG chr6 time: 226.85470191994682 s 2025-01-31 09:48:16,108 DEBUG Processing 22/712 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,178 DEBUG Processing 684/725 atomic regions from SNP 205090 to 205690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,203 DEBUG chr6: Fitting background model for 16 segments 2025-01-31 09:48:16,219 DEBUG Processing 658/710 atomic regions from SNP 197275 to 197875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,228 DEBUG Processing 609/689 atomic regions from SNP 182603 to 183203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,238 DEBUG Processing 257/637 atomic regions from SNP 77056 to 77657 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,317 DEBUG Processing 23/712 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,392 DEBUG Processing 685/725 atomic regions from SNP 205390 to 205990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,450 DEBUG Processing 659/710 atomic regions from SNP 197575 to 198175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,453 DEBUG Processing 610/689 atomic regions from SNP 182903 to 183503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,458 DEBUG Processing 258/637 atomic regions from SNP 77357 to 77958 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,526 DEBUG Processing 24/712 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,610 DEBUG Processing 686/725 atomic regions from SNP 205690 to 206290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,667 DEBUG Processing 660/710 atomic regions from SNP 197875 to 198475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,683 DEBUG Processing 611/689 atomic regions from SNP 183203 to 183803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,696 DEBUG Processing 259/637 atomic regions from SNP 77658 to 78259 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,737 DEBUG Processing 25/712 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,827 DEBUG Processing 687/725 atomic regions from SNP 205990 to 206590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,877 DEBUG Processing 661/710 atomic regions from SNP 198175 to 198775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,924 DEBUG Processing 260/637 atomic regions from SNP 77959 to 78560 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:16,928 DEBUG Processing 612/689 atomic regions from SNP 183503 to 184103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,945 DEBUG Processing 26/712 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,049 DEBUG Processing 688/725 atomic regions from SNP 206290 to 206890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,095 DEBUG Processing 662/710 atomic regions from SNP 198475 to 199075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,128 DEBUG Processing 261/637 atomic regions from SNP 78260 to 78861 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,148 DEBUG Processing 27/712 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,160 DEBUG Processing 613/689 atomic regions from SNP 183803 to 184403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,275 DEBUG Processing 689/725 atomic regions from SNP 206590 to 207190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,326 DEBUG Processing 663/710 atomic regions from SNP 198775 to 199375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,327 DEBUG Processing 262/637 atomic regions from SNP 78561 to 79162 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,365 DEBUG Processing 28/712 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,382 DEBUG Processing 614/689 atomic regions from SNP 184103 to 184703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,498 DEBUG Processing 690/725 atomic regions from SNP 206890 to 207490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,537 DEBUG Processing 263/637 atomic regions from SNP 78862 to 79463 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,571 DEBUG Processing 664/710 atomic regions from SNP 199075 to 199675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,584 DEBUG Processing 29/712 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,613 DEBUG Processing 615/689 atomic regions from SNP 184403 to 185003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,708 DEBUG Processing 691/725 atomic regions from SNP 207190 to 207790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,740 DEBUG Processing 264/637 atomic regions from SNP 79163 to 79764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:17,806 DEBUG Processing 30/712 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,815 DEBUG Processing 665/710 atomic regions from SNP 199375 to 199975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,839 DEBUG Processing 616/689 atomic regions from SNP 184703 to 185303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,920 DEBUG Processing 692/725 atomic regions from SNP 207490 to 208090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,954 DEBUG Processing 265/637 atomic regions from SNP 79464 to 80065 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,017 DEBUG Processing 31/712 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,062 DEBUG Processing 666/710 atomic regions from SNP 199675 to 200275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,064 DEBUG Processing 617/689 atomic regions from SNP 185003 to 185603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,134 DEBUG Processing 693/725 atomic regions from SNP 207790 to 208390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,154 DEBUG Processing 266/637 atomic regions from SNP 79765 to 80366 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,228 DEBUG Processing 32/712 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,285 DEBUG Processing 618/689 atomic regions from SNP 185303 to 185903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,300 DEBUG Processing 667/710 atomic regions from SNP 199975 to 200575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,355 DEBUG Processing 694/725 atomic regions from SNP 208090 to 208690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,360 DEBUG Processing 267/637 atomic regions from SNP 80066 to 80667 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,444 DEBUG Processing 33/712 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,518 DEBUG Processing 619/689 atomic regions from SNP 185603 to 186203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,543 DEBUG Processing 668/710 atomic regions from SNP 200275 to 200875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,563 DEBUG Processing 268/637 atomic regions from SNP 80367 to 80968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,574 DEBUG Processing 695/725 atomic regions from SNP 208390 to 208990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,666 DEBUG Processing 34/712 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,740 DEBUG Processing 620/689 atomic regions from SNP 185903 to 186503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,763 DEBUG Processing 269/637 atomic regions from SNP 80668 to 81269 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,776 DEBUG Processing 669/710 atomic regions from SNP 200575 to 201175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,783 DEBUG Processing 696/725 atomic regions from SNP 208690 to 209290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,881 DEBUG Processing 35/712 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,964 DEBUG Processing 621/689 atomic regions from SNP 186203 to 186803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,965 DEBUG Processing 270/637 atomic regions from SNP 80969 to 81570 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:18,998 DEBUG Processing 697/725 atomic regions from SNP 208990 to 209590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,022 DEBUG Processing 670/710 atomic regions from SNP 200875 to 201475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,087 DEBUG Processing 36/712 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,176 DEBUG Processing 271/637 atomic regions from SNP 81270 to 81871 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,194 DEBUG Processing 622/689 atomic regions from SNP 186503 to 187103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,224 DEBUG Processing 698/725 atomic regions from SNP 209290 to 209890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,281 DEBUG Processing 671/710 atomic regions from SNP 201175 to 201775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,313 DEBUG Processing 37/712 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,397 DEBUG Processing 272/637 atomic regions from SNP 81571 to 82172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,424 DEBUG Processing 623/689 atomic regions from SNP 186803 to 187403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,458 DEBUG Processing 699/725 atomic regions from SNP 209590 to 210190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,529 DEBUG Processing 38/712 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,535 DEBUG Processing 672/710 atomic regions from SNP 201475 to 202075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,611 DEBUG Processing 273/637 atomic regions from SNP 81872 to 82472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,639 DEBUG Processing 624/689 atomic regions from SNP 187103 to 187703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,677 DEBUG Processing 700/725 atomic regions from SNP 209890 to 210490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,745 DEBUG Processing 39/712 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,775 DEBUG Processing 673/710 atomic regions from SNP 201775 to 202375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,807 DEBUG Processing 274/637 atomic regions from SNP 82172 to 82772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:19,854 DEBUG Processing 625/689 atomic regions from SNP 187403 to 188003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,891 DEBUG Processing 701/725 atomic regions from SNP 210190 to 210790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,956 DEBUG Processing 40/712 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,011 DEBUG Processing 275/637 atomic regions from SNP 82472 to 83072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,027 DEBUG Processing 674/710 atomic regions from SNP 202075 to 202675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,076 DEBUG Processing 626/689 atomic regions from SNP 187703 to 188303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,109 DEBUG Processing 702/725 atomic regions from SNP 210490 to 211090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,162 DEBUG Processing 41/712 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,205 DEBUG Processing 276/637 atomic regions from SNP 82772 to 83372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,281 DEBUG Processing 675/710 atomic regions from SNP 202375 to 202975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,293 DEBUG Processing 627/689 atomic regions from SNP 188003 to 188603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,332 DEBUG Processing 703/725 atomic regions from SNP 210790 to 211390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,369 DEBUG Processing 42/712 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,395 DEBUG Processing 277/637 atomic regions from SNP 83072 to 83672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,511 DEBUG Processing 628/689 atomic regions from SNP 188303 to 188903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,529 DEBUG Processing 676/710 atomic regions from SNP 202675 to 203275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,561 DEBUG Processing 704/725 atomic regions from SNP 211090 to 211690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,587 DEBUG Processing 43/712 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,595 DEBUG Processing 278/637 atomic regions from SNP 83372 to 83972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,722 DEBUG Processing 629/689 atomic regions from SNP 188603 to 189203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,773 DEBUG Processing 677/710 atomic regions from SNP 202975 to 203575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,780 DEBUG Processing 705/725 atomic regions from SNP 211390 to 211990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,795 DEBUG Processing 279/637 atomic regions from SNP 83672 to 84272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:20,805 DEBUG Processing 44/712 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,940 DEBUG Processing 630/689 atomic regions from SNP 188903 to 189503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,994 DEBUG Processing 280/637 atomic regions from SNP 83972 to 84572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,010 DEBUG Processing 706/725 atomic regions from SNP 211690 to 212290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,014 DEBUG Processing 678/710 atomic regions from SNP 203275 to 203875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,015 DEBUG Processing 45/712 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,164 DEBUG Processing 631/689 atomic regions from SNP 189203 to 189803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,194 DEBUG Processing 281/637 atomic regions from SNP 84272 to 84872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,226 DEBUG Processing 46/712 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,256 DEBUG Processing 707/725 atomic regions from SNP 211990 to 212590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,262 DEBUG Processing 679/710 atomic regions from SNP 203575 to 204175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,393 DEBUG Processing 632/689 atomic regions from SNP 189503 to 190103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,400 DEBUG Processing 282/637 atomic regions from SNP 84572 to 85172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,441 DEBUG Processing 47/712 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,507 DEBUG Processing 680/710 atomic regions from SNP 203875 to 204475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,510 DEBUG Processing 708/725 atomic regions from SNP 212290 to 212890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,603 DEBUG Processing 283/637 atomic regions from SNP 84872 to 85472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,616 DEBUG Processing 633/689 atomic regions from SNP 189803 to 190403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,659 DEBUG Processing 48/712 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,749 DEBUG Processing 681/710 atomic regions from SNP 204175 to 204775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,755 DEBUG Processing 709/725 atomic regions from SNP 212590 to 213190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,805 DEBUG Processing 284/637 atomic regions from SNP 85172 to 85772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:21,838 DEBUG Processing 634/689 atomic regions from SNP 190103 to 190703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,880 DEBUG Processing 49/712 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,984 DEBUG Processing 682/710 atomic regions from SNP 204475 to 205075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,001 DEBUG Processing 710/725 atomic regions from SNP 212890 to 213490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,006 DEBUG Processing 285/637 atomic regions from SNP 85472 to 86072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,059 DEBUG Processing 635/689 atomic regions from SNP 190403 to 191003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,090 DEBUG Processing 50/712 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,206 DEBUG Processing 683/710 atomic regions from SNP 204775 to 205375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,211 DEBUG Processing 286/637 atomic regions from SNP 85772 to 86372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,241 DEBUG Processing 711/725 atomic regions from SNP 213190 to 213790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,280 DEBUG Processing 636/689 atomic regions from SNP 190703 to 191303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,297 DEBUG Processing 51/712 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,427 DEBUG Processing 684/710 atomic regions from SNP 205075 to 205675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,430 DEBUG Processing 287/637 atomic regions from SNP 86072 to 86672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,465 DEBUG Processing 712/725 atomic regions from SNP 213490 to 214090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,501 DEBUG Processing 637/689 atomic regions from SNP 191003 to 191603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,513 DEBUG Processing 52/712 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,622 DEBUG Processing 288/637 atomic regions from SNP 86372 to 86972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,666 DEBUG Processing 685/710 atomic regions from SNP 205375 to 205975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,712 DEBUG Processing 713/725 atomic regions from SNP 213790 to 214390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,725 DEBUG Processing 638/689 atomic regions from SNP 191303 to 191903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,729 DEBUG Processing 53/712 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,813 DEBUG Processing 289/637 atomic regions from SNP 86672 to 87272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:22,877 DEBUG Processing 686/710 atomic regions from SNP 205675 to 206275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,941 DEBUG Processing 54/712 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,942 DEBUG Processing 639/689 atomic regions from SNP 191603 to 192203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,953 DEBUG Processing 714/725 atomic regions from SNP 214090 to 214690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,008 DEBUG Processing 290/637 atomic regions from SNP 86972 to 87572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,083 DEBUG Processing 687/710 atomic regions from SNP 205975 to 206575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,150 DEBUG Processing 55/712 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,156 DEBUG Processing 640/689 atomic regions from SNP 191903 to 192503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,195 DEBUG Processing 715/725 atomic regions from SNP 214390 to 214990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,202 DEBUG Processing 291/637 atomic regions from SNP 87272 to 87872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,293 DEBUG Processing 688/710 atomic regions from SNP 206275 to 206875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,356 DEBUG Processing 56/712 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,376 DEBUG Processing 641/689 atomic regions from SNP 192203 to 192803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,398 DEBUG Processing 292/637 atomic regions from SNP 87572 to 88172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,442 DEBUG Processing 716/725 atomic regions from SNP 214690 to 215290 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,504 DEBUG Processing 689/710 atomic regions from SNP 206575 to 207175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,567 DEBUG Processing 57/712 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,604 DEBUG Processing 293/637 atomic regions from SNP 87872 to 88472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,605 DEBUG Processing 642/689 atomic regions from SNP 192503 to 193103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,689 DEBUG Processing 717/725 atomic regions from SNP 214990 to 215590 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,712 DEBUG Processing 690/710 atomic regions from SNP 206875 to 207475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,797 DEBUG Processing 58/712 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,804 DEBUG Processing 294/637 atomic regions from SNP 88172 to 88772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:23,825 DEBUG Processing 643/689 atomic regions from SNP 192803 to 193403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,926 DEBUG Processing 691/710 atomic regions from SNP 207175 to 207775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,927 DEBUG Processing 718/725 atomic regions from SNP 215290 to 215890 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,004 DEBUG Processing 59/712 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,014 DEBUG Processing 295/637 atomic regions from SNP 88472 to 89072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,048 DEBUG Processing 644/689 atomic regions from SNP 193103 to 193703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,146 DEBUG Processing 692/710 atomic regions from SNP 207475 to 208075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,151 DEBUG Processing 719/725 atomic regions from SNP 215590 to 216190 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,211 DEBUG Processing 296/637 atomic regions from SNP 88772 to 89372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,214 DEBUG Processing 60/712 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,266 DEBUG Processing 645/689 atomic regions from SNP 193403 to 194003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,365 DEBUG Processing 693/710 atomic regions from SNP 207775 to 208375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,372 DEBUG Processing 720/725 atomic regions from SNP 215890 to 216490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,414 DEBUG Processing 297/637 atomic regions from SNP 89072 to 89672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,429 DEBUG Processing 61/712 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,492 DEBUG Processing 646/689 atomic regions from SNP 193703 to 194303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,589 DEBUG Processing 694/710 atomic regions from SNP 208075 to 208675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,595 DEBUG Processing 721/725 atomic regions from SNP 216190 to 216790 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,617 DEBUG Processing 298/637 atomic regions from SNP 89372 to 89972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,648 DEBUG Processing 62/712 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,717 DEBUG Processing 647/689 atomic regions from SNP 194003 to 194603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,813 DEBUG Processing 722/725 atomic regions from SNP 216490 to 217090 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,818 DEBUG Processing 299/637 atomic regions from SNP 89672 to 90272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:24,821 DEBUG Processing 695/710 atomic regions from SNP 208375 to 208975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,859 DEBUG Processing 63/712 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,946 DEBUG Processing 648/689 atomic regions from SNP 194303 to 194903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,018 DEBUG Processing 300/637 atomic regions from SNP 89972 to 90572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,031 DEBUG Processing 723/725 atomic regions from SNP 216790 to 217390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,061 DEBUG Processing 696/710 atomic regions from SNP 208675 to 209275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,067 DEBUG Processing 64/712 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,172 DEBUG Processing 649/689 atomic regions from SNP 194603 to 195203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,226 DEBUG Processing 301/637 atomic regions from SNP 90272 to 90872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,256 DEBUG Processing 724/725 atomic regions from SNP 217090 to 217690 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,286 DEBUG Processing 65/712 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,287 DEBUG Processing 697/710 atomic regions from SNP 208975 to 209575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,396 DEBUG Processing 650/689 atomic regions from SNP 194903 to 195503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,446 DEBUG Processing 302/637 atomic regions from SNP 90572 to 91172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,487 DEBUG Processing 725/725 atomic regions from SNP 217390 to 217990 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,538 DEBUG Processing 698/710 atomic regions from SNP 209275 to 209875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,540 DEBUG Processing 66/712 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,627 DEBUG Unique SNPs positions in subchromosome 1: 217991 2025-01-31 09:48:25,631 DEBUG Processing 651/689 atomic regions from SNP 195203 to 195803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,668 DEBUG Processing 303/637 atomic regions from SNP 90872 to 91472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,771 DEBUG Processing 67/712 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,772 DEBUG Processing 699/710 atomic regions from SNP 209575 to 210175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,864 DEBUG Processing 652/689 atomic regions from SNP 195503 to 196103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,878 DEBUG Processing 304/637 atomic regions from SNP 91172 to 91772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:25,977 DEBUG Processing 68/712 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,983 DEBUG Processing 700/710 atomic regions from SNP 209875 to 210475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,097 DEBUG Processing 653/689 atomic regions from SNP 195803 to 196403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,098 DEBUG Processing 305/637 atomic regions from SNP 91472 to 92072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,187 DEBUG Processing 69/712 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,192 DEBUG Processing 701/710 atomic regions from SNP 210175 to 210775 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,309 DEBUG Processing 306/637 atomic regions from SNP 91772 to 92372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,329 DEBUG Processing 654/689 atomic regions from SNP 196103 to 196703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,406 DEBUG Processing 70/712 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,413 DEBUG Processing 702/710 atomic regions from SNP 210475 to 211075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,521 DEBUG Processing 307/637 atomic regions from SNP 92072 to 92672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,566 DEBUG Processing 655/689 atomic regions from SNP 196403 to 197003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,631 DEBUG Processing 71/712 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,642 DEBUG Processing 703/710 atomic regions from SNP 210775 to 211375 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,725 DEBUG Processing 308/637 atomic regions from SNP 92372 to 92972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,792 DEBUG Processing 656/689 atomic regions from SNP 196703 to 197303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,817 DEBUG Subchromosome time: 187.44918582891114, subchromosome SNPs: 217991 2025-01-31 09:48:26,817 DEBUG Estimated BADs: [2.29, 4.59, 1.15, 6.88, 2.29, 4.59, 22.93, 4.59, 2.29, 13.76, 2.29] SNP counts: [63078, 6208, 25867, 6577, 20998, 7381, 3679, 8575, 69319, 3419, 2890] SNP IDs counts: [63078, 6208, 25867, 6577, 20998, 7381, 3679, 8575, 69319, 3419, 2890] Critical gap: 627207bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 40.12Mbp, 43.44Mbp, 59.79Mbp, 63.24Mbp, 75.55Mbp, 79.65Mbp, 81.56Mbp, 86.68Mbp, 126.90Mbp, 128.70Mbp, 130.69Mbp] 2025-01-31 09:48:26,817 DEBUG chr10 time: 187.44961974595208 s 2025-01-31 09:48:26,841 DEBUG Processing 72/712 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,854 DEBUG Processing 704/710 atomic regions from SNP 211075 to 211675 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,929 DEBUG Processing 309/637 atomic regions from SNP 92672 to 93272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:26,944 DEBUG chr10: Fitting background model for 11 segments 2025-01-31 09:48:27,024 DEBUG Processing 657/689 atomic regions from SNP 197003 to 197603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,053 DEBUG Processing 73/712 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,068 DEBUG Processing 705/710 atomic regions from SNP 211375 to 211975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,132 DEBUG Processing 310/637 atomic regions from SNP 92972 to 93572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,256 DEBUG Processing 658/689 atomic regions from SNP 197303 to 197903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,270 DEBUG Processing 74/712 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,286 DEBUG Processing 706/710 atomic regions from SNP 211675 to 212275 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,331 DEBUG Processing 311/637 atomic regions from SNP 93272 to 93872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,484 DEBUG Processing 75/712 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,493 DEBUG Processing 659/689 atomic regions from SNP 197603 to 198203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,502 DEBUG Processing 707/710 atomic regions from SNP 211975 to 212575 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,533 DEBUG Processing 312/637 atomic regions from SNP 93572 to 94172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,701 DEBUG Processing 76/712 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,722 DEBUG Processing 708/710 atomic regions from SNP 212275 to 212875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,724 DEBUG Processing 660/689 atomic regions from SNP 197903 to 198503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,742 DEBUG Processing 313/637 atomic regions from SNP 93872 to 94472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,923 DEBUG Processing 77/712 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,953 DEBUG Processing 314/637 atomic regions from SNP 94172 to 94772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:27,954 DEBUG Processing 709/710 atomic regions from SNP 212575 to 213175 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,960 DEBUG Processing 661/689 atomic regions from SNP 198203 to 198803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,136 DEBUG Processing 78/712 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,166 DEBUG Processing 315/637 atomic regions from SNP 94472 to 95072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,181 DEBUG Processing 710/710 atomic regions from SNP 212875 to 213475 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,194 DEBUG Processing 662/689 atomic regions from SNP 198503 to 199103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,308 DEBUG Unique SNPs positions in subchromosome 1: 213476 2025-01-31 09:48:28,342 DEBUG Processing 79/712 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,372 DEBUG Processing 316/637 atomic regions from SNP 94772 to 95372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,439 DEBUG Processing 663/689 atomic regions from SNP 198803 to 199403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,551 DEBUG Processing 80/712 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,599 DEBUG Processing 317/637 atomic regions from SNP 95072 to 95672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,689 DEBUG Processing 664/689 atomic regions from SNP 199103 to 199703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,770 DEBUG Processing 81/712 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,830 DEBUG Processing 318/637 atomic regions from SNP 95372 to 95972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:28,960 DEBUG Processing 665/689 atomic regions from SNP 199403 to 200003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,983 DEBUG Processing 82/712 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,055 DEBUG Processing 319/637 atomic regions from SNP 95672 to 96272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,200 DEBUG Processing 83/712 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,216 DEBUG Processing 666/689 atomic regions from SNP 199703 to 200303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,256 DEBUG Processing 320/637 atomic regions from SNP 95972 to 96572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,425 DEBUG Processing 84/712 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,472 DEBUG Processing 321/637 atomic regions from SNP 96272 to 96872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,481 DEBUG Processing 667/689 atomic regions from SNP 200003 to 200603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,647 DEBUG Processing 85/712 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,686 DEBUG Processing 322/637 atomic regions from SNP 96572 to 97172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,732 DEBUG Processing 668/689 atomic regions from SNP 200303 to 200903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,868 DEBUG Processing 86/712 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,897 DEBUG Processing 323/637 atomic regions from SNP 96872 to 97472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:29,980 DEBUG Processing 669/689 atomic regions from SNP 200603 to 201203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,099 DEBUG Processing 87/712 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,112 DEBUG Processing 324/637 atomic regions from SNP 97172 to 97772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,228 DEBUG Processing 670/689 atomic regions from SNP 200903 to 201503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,321 DEBUG Processing 88/712 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,332 DEBUG Processing 325/637 atomic regions from SNP 97472 to 98072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,467 DEBUG Processing 671/689 atomic regions from SNP 201203 to 201803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,537 DEBUG Processing 89/712 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,543 DEBUG Processing 326/637 atomic regions from SNP 97772 to 98372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,720 DEBUG Processing 672/689 atomic regions from SNP 201503 to 202103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,751 DEBUG Processing 90/712 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,755 DEBUG Processing 327/637 atomic regions from SNP 98072 to 98672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,965 DEBUG Processing 91/712 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,969 DEBUG Processing 328/637 atomic regions from SNP 98372 to 98972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:30,976 DEBUG Processing 673/689 atomic regions from SNP 201803 to 202403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,185 DEBUG Processing 92/712 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,201 DEBUG Processing 329/637 atomic regions from SNP 98672 to 99272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,224 DEBUG Processing 674/689 atomic regions from SNP 202103 to 202703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,399 DEBUG Processing 93/712 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,423 DEBUG Processing 330/637 atomic regions from SNP 98972 to 99572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,466 DEBUG Processing 675/689 atomic regions from SNP 202403 to 203003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,608 DEBUG Processing 94/712 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,633 DEBUG Processing 331/637 atomic regions from SNP 99272 to 99872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,701 DEBUG Processing 676/689 atomic regions from SNP 202703 to 203303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,836 DEBUG Processing 95/712 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,842 DEBUG Processing 332/637 atomic regions from SNP 99572 to 100172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:31,926 DEBUG Processing 677/689 atomic regions from SNP 203003 to 203603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,061 DEBUG Processing 333/637 atomic regions from SNP 99872 to 100472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,087 DEBUG Processing 96/712 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,157 DEBUG Processing 678/689 atomic regions from SNP 203303 to 203903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,269 DEBUG Processing 334/637 atomic regions from SNP 100172 to 100772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,345 DEBUG Processing 97/712 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,387 DEBUG Processing 679/689 atomic regions from SNP 203603 to 204203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,473 DEBUG Processing 335/637 atomic regions from SNP 100472 to 101072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,608 DEBUG Processing 98/712 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,626 DEBUG Processing 680/689 atomic regions from SNP 203903 to 204503 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,689 DEBUG Processing 336/637 atomic regions from SNP 100772 to 101372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:32,870 DEBUG Processing 99/712 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,877 DEBUG Processing 681/689 atomic regions from SNP 204203 to 204803 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,902 DEBUG Processing 337/637 atomic regions from SNP 101072 to 101672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,112 DEBUG Processing 338/637 atomic regions from SNP 101372 to 101972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,115 DEBUG Processing 100/712 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,123 DEBUG Processing 682/689 atomic regions from SNP 204503 to 205103 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,320 DEBUG Processing 339/637 atomic regions from SNP 101672 to 102272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,350 DEBUG Processing 683/689 atomic regions from SNP 204803 to 205403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,352 DEBUG Processing 101/712 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,535 DEBUG Processing 340/637 atomic regions from SNP 101972 to 102572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,578 DEBUG Processing 102/712 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,581 DEBUG Processing 684/689 atomic regions from SNP 205103 to 205703 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,737 DEBUG Processing 341/637 atomic regions from SNP 102272 to 102872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:33,805 DEBUG Processing 685/689 atomic regions from SNP 205403 to 206003 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,817 DEBUG Processing 103/712 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,933 DEBUG Processing 342/637 atomic regions from SNP 102572 to 103172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,021 DEBUG Processing 686/689 atomic regions from SNP 205703 to 206303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,065 DEBUG Processing 104/712 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,141 DEBUG Processing 343/637 atomic regions from SNP 102872 to 103472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,233 DEBUG Processing 687/689 atomic regions from SNP 206003 to 206603 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,291 DEBUG Processing 105/712 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,345 DEBUG Processing 344/637 atomic regions from SNP 103172 to 103772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,445 DEBUG Processing 688/689 atomic regions from SNP 206303 to 206903 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,508 DEBUG Processing 106/712 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,550 DEBUG Processing 345/637 atomic regions from SNP 103472 to 104072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,659 DEBUG Processing 689/689 atomic regions from SNP 206603 to 207203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,712 DEBUG Processing 107/712 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,753 DEBUG Processing 346/637 atomic regions from SNP 103772 to 104372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:34,791 DEBUG Unique SNPs positions in subchromosome 3: 207204 2025-01-31 09:48:34,919 DEBUG Processing 108/712 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,966 DEBUG Processing 347/637 atomic regions from SNP 104072 to 104672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,125 DEBUG Processing 109/712 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,196 DEBUG Processing 348/637 atomic regions from SNP 104372 to 104972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,333 DEBUG Processing 110/712 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,413 DEBUG Processing 349/637 atomic regions from SNP 104672 to 105272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,552 DEBUG Processing 111/712 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,615 DEBUG Processing 350/637 atomic regions from SNP 104972 to 105572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,760 DEBUG Subchromosome time: 188.29921836499125, subchromosome SNPs: 213476 2025-01-31 09:48:35,760 DEBUG Estimated BADs: [4.88, 0.31, 1.22, 4.88, 2.44, 1.22, 12.21, 2.44, 12.21, 2.44, 4.88, 0.41, 1.22, 4.88, 2.44, 4.88, 14.65, 4.88] SNP counts: [2799, 2998, 6809, 5351, 20668, 69073, 4582, 18879, 2940, 16740, 4788, 8439, 3797, 13665, 8686, 4690, 9374, 9198] SNP IDs counts: [2799, 2998, 6809, 5351, 20668, 69073, 4582, 18879, 2940, 16740, 4788, 8439, 3797, 13665, 8686, 4690, 9374, 9198] Critical gap: 627514bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.78Mbp, 7.01Mbp, 10.93Mbp, 13.73Mbp, 27.11Mbp, 69.79Mbp, 72.41Mbp, 83.57Mbp, 85.09Mbp, 94.16Mbp, 96.80Mbp, 102.36Mbp, 104.53Mbp, 111.85Mbp, 116.87Mbp, 119.34Mbp, 124.32Mbp, 129.40Mbp] 2025-01-31 09:48:35,760 DEBUG chr8 time: 188.2997679519467 s 2025-01-31 09:48:35,775 DEBUG Processing 112/712 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,814 DEBUG Processing 351/637 atomic regions from SNP 105272 to 105872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:35,883 DEBUG chr8: Fitting background model for 18 segments 2025-01-31 09:48:35,995 DEBUG Processing 113/712 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,018 DEBUG Processing 352/637 atomic regions from SNP 105572 to 106172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,216 DEBUG Processing 114/712 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,223 DEBUG Processing 353/637 atomic regions from SNP 105872 to 106472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,426 DEBUG Processing 354/637 atomic regions from SNP 106172 to 106772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,437 DEBUG Processing 115/712 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,646 DEBUG Processing 355/637 atomic regions from SNP 106472 to 107072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,663 DEBUG Processing 116/712 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,855 DEBUG Processing 356/637 atomic regions from SNP 106772 to 107372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:36,884 DEBUG Processing 117/712 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,062 DEBUG Processing 357/637 atomic regions from SNP 107072 to 107672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,102 DEBUG Processing 118/712 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,264 DEBUG Processing 358/637 atomic regions from SNP 107372 to 107972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,312 DEBUG Processing 119/712 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,467 DEBUG Processing 359/637 atomic regions from SNP 107672 to 108272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,531 DEBUG Processing 120/712 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,675 DEBUG Processing 360/637 atomic regions from SNP 107972 to 108572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,752 DEBUG Processing 121/712 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,880 DEBUG Processing 361/637 atomic regions from SNP 108272 to 108872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:37,979 DEBUG Processing 122/712 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,078 DEBUG Processing 362/637 atomic regions from SNP 108572 to 109172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:38,189 DEBUG Processing 123/712 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,291 DEBUG Processing 363/637 atomic regions from SNP 108872 to 109472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:38,396 DEBUG Processing 124/712 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,495 DEBUG Processing 364/637 atomic regions from SNP 109172 to 109772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:38,616 DEBUG Processing 125/712 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,696 DEBUG Processing 365/637 atomic regions from SNP 109472 to 110072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:38,848 DEBUG Processing 126/712 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,902 DEBUG Processing 366/637 atomic regions from SNP 109772 to 110372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,064 DEBUG Processing 127/712 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,106 DEBUG Processing 367/637 atomic regions from SNP 110072 to 110672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,270 DEBUG Processing 128/712 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,305 DEBUG Processing 368/637 atomic regions from SNP 110372 to 110972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,332 DEBUG Subchromosome time: 186.62120674108155, subchromosome SNPs: 207204 2025-01-31 09:48:39,333 DEBUG Estimated BADs: [1.22, 9.72, 0.49, 4.86, 0.49, 4.86, 0.61, 9.72, 1.22, 14.58, 0.00, 0.41, 7.29, 0.41, 2.43, 0.81, 4.86, 19.44, 7.29, 0.61, 2.43, 0.81, 2.43, 9.72, 2.43, 0.35, 1.22, 0.27, 2.43, 12.15, 2.43, 17.01, 4.86] SNP counts: [822, 2367, 803, 2498, 2938, 1538, 2650, 2268, 2339, 2002, 26, 1052, 12594, 1488, 9356, 5073, 3307, 1673, 2860, 1797, 3025, 20664, 28743, 1679, 7463, 3907, 9303, 2394, 55256, 3666, 23950, 849, 7105] SNP IDs counts: [822, 2367, 803, 2498, 2938, 1538, 2650, 2268, 2339, 2002, 26, 1052, 12594, 1488, 9356, 5073, 3307, 1673, 2860, 1797, 3025, 20664, 28743, 1679, 7463, 3907, 9303, 2394, 55256, 3666, 23950, 849, 7105] Critical gap: 674764bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 3.58Mbp, 5.13Mbp, 5.75Mbp, 7.30Mbp, 12.36Mbp, 13.36Mbp, 15.91Mbp, 17.10Mbp, 19.00Mbp, 20.07Mbp[0.71Mbp], 21.26Mbp[1.53Mbp], 24.08Mbp, 31.19Mbp, 33.65Mbp, 39.62Mbp, 42.90Mbp, 44.82Mbp, 45.68Mbp, 47.19Mbp, 48.40Mbp, 50.06Mbp, 63.88Mbp, 80.02Mbp, 80.90Mbp, 85.00Mbp, 87.79Mbp, 93.33Mbp, 95.01Mbp, 126.26Mbp, 128.21Mbp, 141.09Mbp, 141.53Mbp, 145.44Mbp] 2025-01-31 09:48:39,333 DEBUG chr7 time: 186.6217674270738 s 2025-01-31 09:48:39,481 DEBUG Processing 129/712 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,482 DEBUG chr7: Fitting background model for 32 segments 2025-01-31 09:48:39,513 DEBUG Processing 369/637 atomic regions from SNP 110672 to 111272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,697 DEBUG Processing 130/712 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,717 DEBUG Processing 370/637 atomic regions from SNP 110972 to 111572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:39,917 DEBUG Processing 131/712 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,929 DEBUG Processing 371/637 atomic regions from SNP 111272 to 111872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,133 DEBUG Processing 372/637 atomic regions from SNP 111572 to 112172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,137 DEBUG Processing 132/712 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,331 DEBUG Processing 373/637 atomic regions from SNP 111872 to 112472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,341 DEBUG Processing 133/712 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,526 DEBUG Processing 374/637 atomic regions from SNP 112172 to 112772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,548 DEBUG Processing 134/712 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,723 DEBUG Processing 375/637 atomic regions from SNP 112472 to 113072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,760 DEBUG Processing 135/712 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,929 DEBUG Processing 376/637 atomic regions from SNP 112772 to 113372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:40,974 DEBUG Processing 136/712 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,146 DEBUG Processing 377/637 atomic regions from SNP 113072 to 113672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,187 DEBUG Processing 137/712 atomic regions from SNP 40936 to 41536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,359 DEBUG Processing 378/637 atomic regions from SNP 113372 to 113972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,405 DEBUG Processing 138/712 atomic regions from SNP 41236 to 41836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,605 DEBUG Processing 379/637 atomic regions from SNP 113672 to 114272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,636 DEBUG Processing 139/712 atomic regions from SNP 41536 to 42136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,834 DEBUG Processing 380/637 atomic regions from SNP 113972 to 114572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:41,867 DEBUG Processing 140/712 atomic regions from SNP 41836 to 42436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,053 DEBUG Processing 381/637 atomic regions from SNP 114272 to 114872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,080 DEBUG Processing 141/712 atomic regions from SNP 42136 to 42736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,250 DEBUG Processing 382/637 atomic regions from SNP 114572 to 115172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,291 DEBUG Processing 142/712 atomic regions from SNP 42436 to 43036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,455 DEBUG Processing 383/637 atomic regions from SNP 114872 to 115472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,511 DEBUG Processing 143/712 atomic regions from SNP 42736 to 43336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,657 DEBUG Processing 384/637 atomic regions from SNP 115172 to 115772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,732 DEBUG Processing 144/712 atomic regions from SNP 43036 to 43636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,857 DEBUG Processing 385/637 atomic regions from SNP 115472 to 116072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:42,953 DEBUG Processing 145/712 atomic regions from SNP 43336 to 43936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,060 DEBUG Processing 386/637 atomic regions from SNP 115772 to 116372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,175 DEBUG Processing 146/712 atomic regions from SNP 43636 to 44236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,262 DEBUG Processing 387/637 atomic regions from SNP 116072 to 116672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,392 DEBUG Processing 147/712 atomic regions from SNP 43936 to 44536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,461 DEBUG Processing 388/637 atomic regions from SNP 116372 to 116972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,584 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:48:43,606 DEBUG Processing 148/712 atomic regions from SNP 44236 to 44836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,656 DEBUG Processing 389/637 atomic regions from SNP 116672 to 117272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:43,824 DEBUG Processing 149/712 atomic regions from SNP 44536 to 45136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,858 DEBUG Processing 390/637 atomic regions from SNP 116972 to 117572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,049 DEBUG Processing 150/712 atomic regions from SNP 44836 to 45436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,068 DEBUG Processing 391/637 atomic regions from SNP 117272 to 117872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,276 DEBUG Processing 151/712 atomic regions from SNP 45136 to 45736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,278 DEBUG Processing 392/637 atomic regions from SNP 117572 to 118172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,491 DEBUG Processing 393/637 atomic regions from SNP 117872 to 118472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,499 DEBUG Processing 152/712 atomic regions from SNP 45436 to 46036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,708 DEBUG Processing 394/637 atomic regions from SNP 118172 to 118772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,728 DEBUG Processing 153/712 atomic regions from SNP 45736 to 46336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,921 DEBUG Processing 395/637 atomic regions from SNP 118472 to 119072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:44,951 DEBUG Processing 154/712 atomic regions from SNP 46036 to 46636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,130 DEBUG Processing 396/637 atomic regions from SNP 118772 to 119372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,186 DEBUG Processing 155/712 atomic regions from SNP 46336 to 46936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,344 DEBUG Processing 397/637 atomic regions from SNP 119072 to 119672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,417 DEBUG Processing 156/712 atomic regions from SNP 46636 to 47236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,560 DEBUG Processing 398/637 atomic regions from SNP 119372 to 119972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,646 DEBUG Processing 157/712 atomic regions from SNP 46936 to 47536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,775 DEBUG Processing 399/637 atomic regions from SNP 119672 to 120272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:45,882 DEBUG Processing 158/712 atomic regions from SNP 47236 to 47836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,992 DEBUG Processing 400/637 atomic regions from SNP 119972 to 120572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,129 DEBUG Processing 159/712 atomic regions from SNP 47536 to 48136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,221 DEBUG Processing 401/637 atomic regions from SNP 120272 to 120872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,348 DEBUG Processing 160/712 atomic regions from SNP 47836 to 48436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,455 DEBUG Processing 402/637 atomic regions from SNP 120572 to 121172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,560 DEBUG Processing 161/712 atomic regions from SNP 48136 to 48736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,666 DEBUG Processing 403/637 atomic regions from SNP 120872 to 121472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,775 DEBUG Processing 162/712 atomic regions from SNP 48436 to 49036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,877 DEBUG Processing 404/637 atomic regions from SNP 121172 to 121772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:46,987 DEBUG Processing 163/712 atomic regions from SNP 48736 to 49336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,088 DEBUG Processing 405/637 atomic regions from SNP 121472 to 122072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,200 DEBUG Processing 164/712 atomic regions from SNP 49036 to 49636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,294 DEBUG Processing 406/637 atomic regions from SNP 121772 to 122372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,421 DEBUG Processing 165/712 atomic regions from SNP 49336 to 49936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,502 DEBUG Processing 407/637 atomic regions from SNP 122072 to 122672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,644 DEBUG Processing 166/712 atomic regions from SNP 49636 to 50236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,715 DEBUG Processing 408/637 atomic regions from SNP 122372 to 122972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:47,862 DEBUG Processing 167/712 atomic regions from SNP 49936 to 50536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,929 DEBUG Processing 409/637 atomic regions from SNP 122672 to 123272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,078 DEBUG Processing 168/712 atomic regions from SNP 50236 to 50836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,136 DEBUG Processing 410/637 atomic regions from SNP 122972 to 123572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,290 DEBUG Processing 169/712 atomic regions from SNP 50536 to 51136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,345 DEBUG Processing 411/637 atomic regions from SNP 123272 to 123872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,514 DEBUG Processing 170/712 atomic regions from SNP 50836 to 51436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,557 DEBUG Processing 412/637 atomic regions from SNP 123572 to 124172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,742 DEBUG Processing 171/712 atomic regions from SNP 51136 to 51736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,770 DEBUG Processing 413/637 atomic regions from SNP 123872 to 124472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:48,972 DEBUG Processing 172/712 atomic regions from SNP 51436 to 52036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,989 DEBUG Processing 414/637 atomic regions from SNP 124172 to 124772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,198 DEBUG Processing 173/712 atomic regions from SNP 51736 to 52336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,209 DEBUG Processing 415/637 atomic regions from SNP 124472 to 125072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,416 DEBUG Processing 174/712 atomic regions from SNP 52036 to 52636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,419 DEBUG Processing 416/637 atomic regions from SNP 124772 to 125372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,625 DEBUG Processing 417/637 atomic regions from SNP 125072 to 125672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,635 DEBUG Processing 175/712 atomic regions from SNP 52336 to 52936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,835 DEBUG Processing 418/637 atomic regions from SNP 125372 to 125972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:49,852 DEBUG Processing 176/712 atomic regions from SNP 52636 to 53236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,043 DEBUG Processing 419/637 atomic regions from SNP 125672 to 126272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,063 DEBUG Processing 177/712 atomic regions from SNP 52936 to 53536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,256 DEBUG Processing 420/637 atomic regions from SNP 125972 to 126572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,269 DEBUG Processing 178/712 atomic regions from SNP 53236 to 53836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,469 DEBUG Processing 421/637 atomic regions from SNP 126272 to 126872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,482 DEBUG Processing 179/712 atomic regions from SNP 53536 to 54136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,676 DEBUG Processing 422/637 atomic regions from SNP 126572 to 127172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,698 DEBUG Processing 180/712 atomic regions from SNP 53836 to 54436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,885 DEBUG Processing 423/637 atomic regions from SNP 126872 to 127472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:50,913 DEBUG Processing 181/712 atomic regions from SNP 54136 to 54736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,106 DEBUG Processing 424/637 atomic regions from SNP 127172 to 127772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,146 DEBUG Processing 182/712 atomic regions from SNP 54436 to 55036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,326 DEBUG Processing 425/637 atomic regions from SNP 127472 to 128072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,366 DEBUG Processing 183/712 atomic regions from SNP 54736 to 55336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,540 DEBUG Processing 426/637 atomic regions from SNP 127772 to 128372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,598 DEBUG Processing 184/712 atomic regions from SNP 55036 to 55636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,758 DEBUG Processing 427/637 atomic regions from SNP 128072 to 128672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:51,822 DEBUG Processing 185/712 atomic regions from SNP 55336 to 55936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,972 DEBUG Processing 428/637 atomic regions from SNP 128372 to 128972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,043 DEBUG Processing 186/712 atomic regions from SNP 55636 to 56236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,189 DEBUG Processing 429/637 atomic regions from SNP 128672 to 129272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,262 DEBUG Processing 187/712 atomic regions from SNP 55936 to 56536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,396 DEBUG Processing 430/637 atomic regions from SNP 128972 to 129572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,479 DEBUG Processing 188/712 atomic regions from SNP 56236 to 56836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,611 DEBUG Processing 431/637 atomic regions from SNP 129272 to 129872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,709 DEBUG Processing 189/712 atomic regions from SNP 56536 to 57136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,821 DEBUG Processing 432/637 atomic regions from SNP 129572 to 130172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:52,954 DEBUG Processing 190/712 atomic regions from SNP 56836 to 57436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,034 DEBUG Processing 433/637 atomic regions from SNP 129872 to 130472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,186 DEBUG Processing 191/712 atomic regions from SNP 57136 to 57736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,256 DEBUG Processing 434/637 atomic regions from SNP 130172 to 130772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,400 DEBUG Processing 192/712 atomic regions from SNP 57436 to 58036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,470 DEBUG Processing 435/637 atomic regions from SNP 130472 to 131072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,605 DEBUG Processing 193/712 atomic regions from SNP 57736 to 58336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,686 DEBUG Processing 436/637 atomic regions from SNP 130772 to 131372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:53,824 DEBUG Processing 194/712 atomic regions from SNP 58036 to 58636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,892 DEBUG Processing 437/637 atomic regions from SNP 131072 to 131672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,043 DEBUG Processing 195/712 atomic regions from SNP 58336 to 58936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,107 DEBUG Processing 438/637 atomic regions from SNP 131372 to 131972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,260 DEBUG Processing 196/712 atomic regions from SNP 58636 to 59236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,317 DEBUG Processing 439/637 atomic regions from SNP 131672 to 132272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,476 DEBUG Processing 197/712 atomic regions from SNP 58936 to 59536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,526 DEBUG Processing 440/637 atomic regions from SNP 131972 to 132572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,694 DEBUG Processing 198/712 atomic regions from SNP 59236 to 59836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,734 DEBUG Processing 441/637 atomic regions from SNP 132272 to 132872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:54,917 DEBUG Processing 199/712 atomic regions from SNP 59536 to 60136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,950 DEBUG Processing 442/637 atomic regions from SNP 132572 to 133172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,139 DEBUG Processing 200/712 atomic regions from SNP 59836 to 60436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,164 DEBUG Processing 443/637 atomic regions from SNP 132872 to 133472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,364 DEBUG Processing 201/712 atomic regions from SNP 60136 to 60736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,374 DEBUG Processing 444/637 atomic regions from SNP 133172 to 133772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,580 DEBUG Processing 202/712 atomic regions from SNP 60436 to 61036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,583 DEBUG Processing 445/637 atomic regions from SNP 133472 to 134072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:55,790 DEBUG Processing 203/712 atomic regions from SNP 60736 to 61336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,796 DEBUG Processing 446/637 atomic regions from SNP 133772 to 134372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,004 DEBUG Processing 447/637 atomic regions from SNP 134072 to 134672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,006 DEBUG Processing 204/712 atomic regions from SNP 61036 to 61636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,218 DEBUG Processing 448/637 atomic regions from SNP 134372 to 134972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,225 DEBUG Processing 205/712 atomic regions from SNP 61336 to 61936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,426 DEBUG Processing 449/637 atomic regions from SNP 134672 to 135272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,435 DEBUG Processing 206/712 atomic regions from SNP 61636 to 62236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,640 DEBUG Processing 450/637 atomic regions from SNP 134972 to 135572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,640 DEBUG Processing 207/712 atomic regions from SNP 61936 to 62536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,847 DEBUG Processing 451/637 atomic regions from SNP 135272 to 135872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:56,851 DEBUG Processing 208/712 atomic regions from SNP 62236 to 62836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,072 DEBUG Processing 452/637 atomic regions from SNP 135572 to 136172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,080 DEBUG Processing 209/712 atomic regions from SNP 62536 to 63136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,286 DEBUG Processing 453/637 atomic regions from SNP 135872 to 136472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,301 DEBUG Processing 210/712 atomic regions from SNP 62836 to 63436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,505 DEBUG Processing 454/637 atomic regions from SNP 136172 to 136772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,531 DEBUG Processing 211/712 atomic regions from SNP 63136 to 63736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,714 DEBUG Processing 455/637 atomic regions from SNP 136472 to 137072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:57,774 DEBUG Processing 212/712 atomic regions from SNP 63436 to 64036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,928 DEBUG Processing 456/637 atomic regions from SNP 136772 to 137372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,003 DEBUG Processing 213/712 atomic regions from SNP 63736 to 64336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,140 DEBUG Processing 457/637 atomic regions from SNP 137072 to 137672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,220 DEBUG Processing 214/712 atomic regions from SNP 64036 to 64636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,347 DEBUG Processing 458/637 atomic regions from SNP 137372 to 137972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,435 DEBUG Processing 215/712 atomic regions from SNP 64336 to 64936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,560 DEBUG Processing 459/637 atomic regions from SNP 137672 to 138272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,652 DEBUG Processing 216/712 atomic regions from SNP 64636 to 65236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,774 DEBUG Processing 460/637 atomic regions from SNP 137972 to 138572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:58,878 DEBUG Processing 217/712 atomic regions from SNP 64936 to 65536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,986 DEBUG Processing 461/637 atomic regions from SNP 138272 to 138872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,097 DEBUG Processing 218/712 atomic regions from SNP 65236 to 65836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,204 DEBUG Processing 462/637 atomic regions from SNP 138572 to 139172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,315 DEBUG Processing 219/712 atomic regions from SNP 65536 to 66136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,425 DEBUG Processing 463/637 atomic regions from SNP 138872 to 139472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,536 DEBUG Processing 220/712 atomic regions from SNP 65836 to 66436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,644 DEBUG Processing 464/637 atomic regions from SNP 139172 to 139772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,714 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:48:59,760 DEBUG Processing 221/712 atomic regions from SNP 66136 to 66736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,865 DEBUG Processing 465/637 atomic regions from SNP 139472 to 140072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:48:59,985 DEBUG Processing 222/712 atomic regions from SNP 66436 to 67036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,103 DEBUG Processing 466/637 atomic regions from SNP 139772 to 140372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,217 DEBUG Processing 223/712 atomic regions from SNP 66736 to 67336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,376 DEBUG Processing 467/637 atomic regions from SNP 140072 to 140672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,511 DEBUG Processing 224/712 atomic regions from SNP 67036 to 67636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,590 DEBUG Processing 468/637 atomic regions from SNP 140372 to 140972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,744 DEBUG Processing 225/712 atomic regions from SNP 67336 to 67936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,804 DEBUG Processing 469/637 atomic regions from SNP 140672 to 141272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:00,808 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:49:00,809 DEBUG chr11: Signal quantile: 0.990. signal threshold: 16. Best RMSEA: 0.023 2025-01-31 09:49:00,973 DEBUG Processing 226/712 atomic regions from SNP 67636 to 68236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,029 DEBUG Processing 470/637 atomic regions from SNP 140972 to 141572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,206 DEBUG Processing 227/712 atomic regions from SNP 67936 to 68536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,242 DEBUG Processing 471/637 atomic regions from SNP 141272 to 141872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,443 DEBUG Processing 228/712 atomic regions from SNP 68236 to 68836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,460 DEBUG Processing 472/637 atomic regions from SNP 141572 to 142172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,672 DEBUG Processing 229/712 atomic regions from SNP 68536 to 69136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,675 DEBUG Processing 473/637 atomic regions from SNP 141872 to 142472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,889 DEBUG Processing 474/637 atomic regions from SNP 142172 to 142772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:01,897 DEBUG Processing 230/712 atomic regions from SNP 68836 to 69436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,111 DEBUG Processing 475/637 atomic regions from SNP 142472 to 143072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,121 DEBUG Processing 231/712 atomic regions from SNP 69136 to 69736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,332 DEBUG Processing 476/637 atomic regions from SNP 142772 to 143372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,347 DEBUG Processing 232/712 atomic regions from SNP 69436 to 70036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,545 DEBUG Processing 477/637 atomic regions from SNP 143072 to 143672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,586 DEBUG Processing 233/712 atomic regions from SNP 69736 to 70336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,758 DEBUG Processing 478/637 atomic regions from SNP 143372 to 143972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:02,832 DEBUG Processing 234/712 atomic regions from SNP 70036 to 70636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,976 DEBUG Processing 479/637 atomic regions from SNP 143672 to 144272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,083 DEBUG Processing 235/712 atomic regions from SNP 70336 to 70936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,119 DEBUG chr11 total SNP count: 213082 2025-01-31 09:49:03,119 DEBUG chr11 length: 122082543 2025-01-31 09:49:03,119 DEBUG ----------------------------------------- 2025-01-31 09:49:03,119 INFO Processing SNPs in chr11 2025-01-31 09:49:03,194 DEBUG Processing 480/637 atomic regions from SNP 143972 to 144572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,320 DEBUG Processing 236/712 atomic regions from SNP 70636 to 71236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,335 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 213082)] 2025-01-31 09:49:03,400 DEBUG Processing 481/637 atomic regions from SNP 144272 to 144872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,480 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:03,550 DEBUG Processing 237/712 atomic regions from SNP 70936 to 71536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,605 DEBUG Processing 482/637 atomic regions from SNP 144572 to 145172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,774 DEBUG Processing 238/712 atomic regions from SNP 71236 to 71836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,815 DEBUG Processing 483/637 atomic regions from SNP 144872 to 145472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:03,996 DEBUG Processing 239/712 atomic regions from SNP 71536 to 72136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,024 DEBUG Processing 484/637 atomic regions from SNP 145172 to 145772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,211 DEBUG Processing 240/712 atomic regions from SNP 71836 to 72436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,231 DEBUG Processing 485/637 atomic regions from SNP 145472 to 146072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,432 DEBUG Processing 241/712 atomic regions from SNP 72136 to 72736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,438 DEBUG Processing 486/637 atomic regions from SNP 145772 to 146372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,651 DEBUG Processing 487/637 atomic regions from SNP 146072 to 146672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,656 DEBUG Processing 242/712 atomic regions from SNP 72436 to 73036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,856 DEBUG Processing 488/637 atomic regions from SNP 146372 to 146972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:04,881 DEBUG Processing 243/712 atomic regions from SNP 72736 to 73336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,066 DEBUG Processing 489/637 atomic regions from SNP 146672 to 147272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,107 DEBUG Processing 244/712 atomic regions from SNP 73036 to 73636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,275 DEBUG Processing 490/637 atomic regions from SNP 146972 to 147572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,341 DEBUG Processing 245/712 atomic regions from SNP 73336 to 73936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,482 DEBUG Processing 491/637 atomic regions from SNP 147272 to 147872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,572 DEBUG Processing 246/712 atomic regions from SNP 73636 to 74236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,692 DEBUG Processing 492/637 atomic regions from SNP 147572 to 148172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:05,799 DEBUG Processing 247/712 atomic regions from SNP 73936 to 74536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,902 DEBUG Processing 493/637 atomic regions from SNP 147872 to 148472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,011 DEBUG Processing 248/712 atomic regions from SNP 74236 to 74836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,111 DEBUG Processing 494/637 atomic regions from SNP 148172 to 148772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,229 DEBUG Processing 249/712 atomic regions from SNP 74536 to 75136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,318 DEBUG Processing 495/637 atomic regions from SNP 148472 to 149072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,446 DEBUG Processing 250/712 atomic regions from SNP 74836 to 75436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,527 DEBUG Processing 496/637 atomic regions from SNP 148772 to 149372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,666 DEBUG Processing 251/712 atomic regions from SNP 75136 to 75736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,736 DEBUG Processing 497/637 atomic regions from SNP 149072 to 149672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:06,880 DEBUG Processing 252/712 atomic regions from SNP 75436 to 76036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,943 DEBUG Processing 498/637 atomic regions from SNP 149372 to 149972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,101 DEBUG Processing 253/712 atomic regions from SNP 75736 to 76336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,162 DEBUG Processing 499/637 atomic regions from SNP 149672 to 150272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,323 DEBUG Processing 254/712 atomic regions from SNP 76036 to 76636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,369 DEBUG Processing 500/637 atomic regions from SNP 149972 to 150572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,549 DEBUG Processing 255/712 atomic regions from SNP 76336 to 76936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,576 DEBUG Processing 501/637 atomic regions from SNP 150272 to 150872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,771 DEBUG Processing 256/712 atomic regions from SNP 76636 to 77236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,785 DEBUG Processing 502/637 atomic regions from SNP 150572 to 151172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:07,993 DEBUG Processing 257/712 atomic regions from SNP 76936 to 77536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,999 DEBUG Processing 503/637 atomic regions from SNP 150872 to 151472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,215 DEBUG Processing 258/712 atomic regions from SNP 77236 to 77836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,217 DEBUG Processing 504/637 atomic regions from SNP 151172 to 151772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,427 DEBUG Processing 505/637 atomic regions from SNP 151472 to 152072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,439 DEBUG Processing 259/712 atomic regions from SNP 77536 to 78136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,638 DEBUG Processing 506/637 atomic regions from SNP 151772 to 152372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,656 DEBUG Processing 260/712 atomic regions from SNP 77836 to 78436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,848 DEBUG Processing 507/637 atomic regions from SNP 152072 to 152672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:08,872 DEBUG Processing 261/712 atomic regions from SNP 78136 to 78736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,058 DEBUG Processing 508/637 atomic regions from SNP 152372 to 152972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,095 DEBUG Processing 262/712 atomic regions from SNP 78436 to 79036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,269 DEBUG Processing 509/637 atomic regions from SNP 152672 to 153272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,322 DEBUG Processing 263/712 atomic regions from SNP 78736 to 79336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,487 DEBUG Processing 510/637 atomic regions from SNP 152972 to 153572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,537 DEBUG Processing 264/712 atomic regions from SNP 79036 to 79636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,698 DEBUG Processing 511/637 atomic regions from SNP 153272 to 153872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,763 DEBUG Processing 265/712 atomic regions from SNP 79336 to 79936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,911 DEBUG Processing 512/637 atomic regions from SNP 153572 to 154172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:09,987 DEBUG Processing 266/712 atomic regions from SNP 79636 to 80236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,133 DEBUG Processing 513/637 atomic regions from SNP 153872 to 154472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,215 DEBUG Processing 267/712 atomic regions from SNP 79936 to 80536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,347 DEBUG Processing 514/637 atomic regions from SNP 154172 to 154772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,441 DEBUG Processing 268/712 atomic regions from SNP 80236 to 80836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,556 DEBUG Processing 515/637 atomic regions from SNP 154472 to 155072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,668 DEBUG Processing 269/712 atomic regions from SNP 80536 to 81136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,767 DEBUG Processing 516/637 atomic regions from SNP 154772 to 155372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:10,890 DEBUG Processing 270/712 atomic regions from SNP 80836 to 81436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,978 DEBUG Processing 517/637 atomic regions from SNP 155072 to 155672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,115 DEBUG Processing 271/712 atomic regions from SNP 81136 to 81736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,185 DEBUG Processing 518/637 atomic regions from SNP 155372 to 155972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,338 DEBUG Processing 272/712 atomic regions from SNP 81436 to 82036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,394 DEBUG Processing 519/637 atomic regions from SNP 155672 to 156272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,564 DEBUG Processing 273/712 atomic regions from SNP 81736 to 82336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,607 DEBUG Processing 520/637 atomic regions from SNP 155972 to 156572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:11,792 DEBUG Processing 274/712 atomic regions from SNP 82036 to 82636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,821 DEBUG Processing 521/637 atomic regions from SNP 156272 to 156872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,026 DEBUG Processing 275/712 atomic regions from SNP 82336 to 82936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,028 DEBUG Processing 522/637 atomic regions from SNP 156572 to 157172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,242 DEBUG Processing 523/637 atomic regions from SNP 156872 to 157472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,271 DEBUG Processing 276/712 atomic regions from SNP 82636 to 83236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,457 DEBUG Processing 524/637 atomic regions from SNP 157172 to 157772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,499 DEBUG Processing 277/712 atomic regions from SNP 82936 to 83536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,671 DEBUG Processing 525/637 atomic regions from SNP 157472 to 158072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,693 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:49:12,694 DEBUG chr13: Signal quantile: 0.994. signal threshold: 18. Best RMSEA: 0.027 2025-01-31 09:49:12,726 DEBUG Processing 278/712 atomic regions from SNP 83236 to 83836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,881 DEBUG Processing 526/637 atomic regions from SNP 157772 to 158372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:12,953 DEBUG Processing 279/712 atomic regions from SNP 83536 to 84136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,096 DEBUG Processing 527/637 atomic regions from SNP 158072 to 158672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,170 DEBUG Processing 280/712 atomic regions from SNP 83836 to 84436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,315 DEBUG Processing 528/637 atomic regions from SNP 158372 to 158972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,391 DEBUG Processing 281/712 atomic regions from SNP 84136 to 84736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,530 DEBUG Processing 529/637 atomic regions from SNP 158672 to 159272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,611 DEBUG Processing 282/712 atomic regions from SNP 84436 to 85036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,743 DEBUG Processing 530/637 atomic regions from SNP 158972 to 159572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:13,835 DEBUG Processing 283/712 atomic regions from SNP 84736 to 85336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,957 DEBUG Processing 531/637 atomic regions from SNP 159272 to 159872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,058 DEBUG Processing 284/712 atomic regions from SNP 85036 to 85636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,170 DEBUG Processing 532/637 atomic regions from SNP 159572 to 160172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,278 DEBUG Processing 285/712 atomic regions from SNP 85336 to 85936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,378 DEBUG Processing 533/637 atomic regions from SNP 159872 to 160472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,495 DEBUG Processing 286/712 atomic regions from SNP 85636 to 86236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,586 DEBUG Processing 534/637 atomic regions from SNP 160172 to 160772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,720 DEBUG Processing 287/712 atomic regions from SNP 85936 to 86536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,759 DEBUG chr13 total SNP count: 200651 2025-01-31 09:49:14,760 DEBUG chr13 length: 120421639 2025-01-31 09:49:14,760 DEBUG ----------------------------------------- 2025-01-31 09:49:14,760 INFO Processing SNPs in chr13 2025-01-31 09:49:14,805 DEBUG Processing 535/637 atomic regions from SNP 160472 to 161072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:14,938 DEBUG Processing 288/712 atomic regions from SNP 86236 to 86836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,958 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 200651)] 2025-01-31 09:49:15,018 DEBUG Processing 536/637 atomic regions from SNP 160772 to 161372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,097 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:15,159 DEBUG Processing 289/712 atomic regions from SNP 86536 to 87136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,227 DEBUG Processing 537/637 atomic regions from SNP 161072 to 161672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,376 DEBUG Processing 290/712 atomic regions from SNP 86836 to 87436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,439 DEBUG Processing 538/637 atomic regions from SNP 161372 to 161972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,592 DEBUG Processing 291/712 atomic regions from SNP 87136 to 87736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,643 DEBUG Processing 539/637 atomic regions from SNP 161672 to 162272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:15,812 DEBUG Processing 292/712 atomic regions from SNP 87436 to 88036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,846 DEBUG Processing 540/637 atomic regions from SNP 161972 to 162572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,039 DEBUG Processing 293/712 atomic regions from SNP 87736 to 88336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,059 DEBUG Processing 541/637 atomic regions from SNP 162272 to 162872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,265 DEBUG Processing 294/712 atomic regions from SNP 88036 to 88636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,271 DEBUG Processing 542/637 atomic regions from SNP 162572 to 163172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,480 DEBUG Processing 543/637 atomic regions from SNP 162872 to 163472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,493 DEBUG Processing 295/712 atomic regions from SNP 88336 to 88936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,690 DEBUG Processing 544/637 atomic regions from SNP 163172 to 163772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,717 DEBUG Processing 296/712 atomic regions from SNP 88636 to 89236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,892 DEBUG Processing 545/637 atomic regions from SNP 163472 to 164072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:16,938 DEBUG Processing 297/712 atomic regions from SNP 88936 to 89536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,090 DEBUG Processing 546/637 atomic regions from SNP 163772 to 164372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,165 DEBUG Processing 298/712 atomic regions from SNP 89236 to 89836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,295 DEBUG Processing 547/637 atomic regions from SNP 164072 to 164672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,390 DEBUG Processing 299/712 atomic regions from SNP 89536 to 90136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,499 DEBUG Processing 548/637 atomic regions from SNP 164372 to 164972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,608 DEBUG Processing 300/712 atomic regions from SNP 89836 to 90436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,706 DEBUG Processing 549/637 atomic regions from SNP 164672 to 165272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:17,824 DEBUG Processing 301/712 atomic regions from SNP 90136 to 90736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,929 DEBUG Processing 550/637 atomic regions from SNP 164972 to 165572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,034 DEBUG Processing 302/712 atomic regions from SNP 90436 to 91036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,143 DEBUG Processing 551/637 atomic regions from SNP 165272 to 165872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,254 DEBUG Processing 303/712 atomic regions from SNP 90736 to 91336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,354 DEBUG Processing 552/637 atomic regions from SNP 165572 to 166172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,474 DEBUG Processing 304/712 atomic regions from SNP 91036 to 91636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,569 DEBUG Processing 553/637 atomic regions from SNP 165872 to 166472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,697 DEBUG Processing 305/712 atomic regions from SNP 91336 to 91936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,785 DEBUG Processing 554/637 atomic regions from SNP 166172 to 166772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:18,915 DEBUG Processing 306/712 atomic regions from SNP 91636 to 92236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,990 DEBUG Processing 555/637 atomic regions from SNP 166472 to 167072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,132 DEBUG Processing 307/712 atomic regions from SNP 91936 to 92536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,192 DEBUG Processing 556/637 atomic regions from SNP 166772 to 167372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,348 DEBUG Processing 308/712 atomic regions from SNP 92236 to 92836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,396 DEBUG Processing 557/637 atomic regions from SNP 167072 to 167672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,565 DEBUG Processing 309/712 atomic regions from SNP 92536 to 93136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,601 DEBUG Processing 558/637 atomic regions from SNP 167372 to 167972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,777 DEBUG Processing 310/712 atomic regions from SNP 92836 to 93436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,810 DEBUG Processing 559/637 atomic regions from SNP 167672 to 168272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:19,986 DEBUG Processing 311/712 atomic regions from SNP 93136 to 93736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,015 DEBUG Processing 560/637 atomic regions from SNP 167972 to 168572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,203 DEBUG Processing 312/712 atomic regions from SNP 93436 to 94036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,225 DEBUG Processing 561/637 atomic regions from SNP 168272 to 168872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,432 DEBUG Processing 313/712 atomic regions from SNP 93736 to 94336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,433 DEBUG Processing 562/637 atomic regions from SNP 168572 to 169172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,644 DEBUG Processing 563/637 atomic regions from SNP 168872 to 169472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,674 DEBUG Processing 314/712 atomic regions from SNP 94036 to 94636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,859 DEBUG Processing 564/637 atomic regions from SNP 169172 to 169772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:20,898 DEBUG Processing 315/712 atomic regions from SNP 94336 to 94936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,075 DEBUG Processing 565/637 atomic regions from SNP 169472 to 170072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,125 DEBUG Processing 316/712 atomic regions from SNP 94636 to 95236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,152 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:49:21,287 DEBUG Processing 566/637 atomic regions from SNP 169772 to 170372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,362 DEBUG Processing 317/712 atomic regions from SNP 94936 to 95536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,494 DEBUG Processing 567/637 atomic regions from SNP 170072 to 170672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,592 DEBUG Processing 318/712 atomic regions from SNP 95236 to 95836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,700 DEBUG Processing 568/637 atomic regions from SNP 170372 to 170972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:21,805 DEBUG Processing 319/712 atomic regions from SNP 95536 to 96136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,906 DEBUG Processing 569/637 atomic regions from SNP 170672 to 171272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,017 DEBUG Processing 320/712 atomic regions from SNP 95836 to 96436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,110 DEBUG Processing 570/637 atomic regions from SNP 170972 to 171572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,243 DEBUG Processing 321/712 atomic regions from SNP 96136 to 96736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,314 DEBUG Processing 571/637 atomic regions from SNP 171272 to 171872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,457 DEBUG Processing 322/712 atomic regions from SNP 96436 to 97036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,520 DEBUG Processing 572/637 atomic regions from SNP 171572 to 172172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,672 DEBUG Processing 323/712 atomic regions from SNP 96736 to 97336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,729 DEBUG Processing 573/637 atomic regions from SNP 171872 to 172472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:22,882 DEBUG Processing 324/712 atomic regions from SNP 97036 to 97636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,940 DEBUG Processing 574/637 atomic regions from SNP 172172 to 172772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,087 DEBUG Processing 325/712 atomic regions from SNP 97336 to 97936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,148 DEBUG Processing 575/637 atomic regions from SNP 172472 to 173072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,296 DEBUG Processing 326/712 atomic regions from SNP 97636 to 98236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,360 DEBUG Processing 576/637 atomic regions from SNP 172772 to 173372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,502 DEBUG Processing 327/712 atomic regions from SNP 97936 to 98536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,571 DEBUG Processing 577/637 atomic regions from SNP 173072 to 173672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,713 DEBUG Processing 328/712 atomic regions from SNP 98236 to 98836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,781 DEBUG Processing 578/637 atomic regions from SNP 173372 to 173972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:23,941 DEBUG Processing 329/712 atomic regions from SNP 98536 to 99136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,990 DEBUG Processing 579/637 atomic regions from SNP 173672 to 174272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,183 DEBUG Processing 330/712 atomic regions from SNP 98836 to 99436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,204 DEBUG Processing 580/637 atomic regions from SNP 173972 to 174572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,392 DEBUG Processing 331/712 atomic regions from SNP 99136 to 99736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,406 DEBUG Processing 581/637 atomic regions from SNP 174272 to 174872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,598 DEBUG Processing 332/712 atomic regions from SNP 99436 to 100036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,608 DEBUG Processing 582/637 atomic regions from SNP 174572 to 175172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:24,811 DEBUG Processing 333/712 atomic regions from SNP 99736 to 100336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,817 DEBUG Processing 583/637 atomic regions from SNP 174872 to 175472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,038 DEBUG Processing 334/712 atomic regions from SNP 100036 to 100636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,042 DEBUG Processing 584/637 atomic regions from SNP 175172 to 175772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,259 DEBUG Processing 335/712 atomic regions from SNP 100336 to 100936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,267 DEBUG Processing 585/637 atomic regions from SNP 175472 to 176072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,482 DEBUG Processing 336/712 atomic regions from SNP 100636 to 101236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,486 DEBUG Processing 586/637 atomic regions from SNP 175772 to 176372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,703 DEBUG Processing 337/712 atomic regions from SNP 100936 to 101536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,706 DEBUG Processing 587/637 atomic regions from SNP 176072 to 176672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:25,915 DEBUG Processing 338/712 atomic regions from SNP 101236 to 101836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,921 DEBUG Processing 588/637 atomic regions from SNP 176372 to 176972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,129 DEBUG Processing 339/712 atomic regions from SNP 101536 to 102136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,132 DEBUG Processing 589/637 atomic regions from SNP 176672 to 177272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,348 DEBUG Processing 590/637 atomic regions from SNP 176972 to 177572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,350 DEBUG Processing 340/712 atomic regions from SNP 101836 to 102436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,562 DEBUG Processing 591/637 atomic regions from SNP 177272 to 177872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,567 DEBUG Processing 341/712 atomic regions from SNP 102136 to 102736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,774 DEBUG Processing 592/637 atomic regions from SNP 177572 to 178172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:26,784 DEBUG Processing 342/712 atomic regions from SNP 102436 to 103036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,982 DEBUG Processing 593/637 atomic regions from SNP 177872 to 178472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,002 DEBUG Processing 343/712 atomic regions from SNP 102736 to 103336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,191 DEBUG Processing 594/637 atomic regions from SNP 178172 to 178772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,226 DEBUG Processing 344/712 atomic regions from SNP 103036 to 103636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,404 DEBUG Processing 595/637 atomic regions from SNP 178472 to 179072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,451 DEBUG Processing 345/712 atomic regions from SNP 103336 to 103936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,617 DEBUG Processing 596/637 atomic regions from SNP 178772 to 179372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,673 DEBUG Processing 346/712 atomic regions from SNP 103636 to 104236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,833 DEBUG Processing 597/637 atomic regions from SNP 179072 to 179672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:27,911 DEBUG Processing 347/712 atomic regions from SNP 103936 to 104536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,052 DEBUG Processing 598/637 atomic regions from SNP 179372 to 179972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,128 DEBUG Processing 348/712 atomic regions from SNP 104236 to 104836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,272 DEBUG Processing 599/637 atomic regions from SNP 179672 to 180272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,352 DEBUG Processing 349/712 atomic regions from SNP 104536 to 105136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,490 DEBUG Processing 600/637 atomic regions from SNP 179972 to 180572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,591 DEBUG Processing 350/712 atomic regions from SNP 104836 to 105436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,705 DEBUG Processing 601/637 atomic regions from SNP 180272 to 180872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:28,803 DEBUG Processing 351/712 atomic regions from SNP 105136 to 105736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,913 DEBUG Processing 602/637 atomic regions from SNP 180572 to 181172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,012 DEBUG Processing 352/712 atomic regions from SNP 105436 to 106036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,116 DEBUG Processing 603/637 atomic regions from SNP 180872 to 181472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,224 DEBUG Processing 353/712 atomic regions from SNP 105736 to 106336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,313 DEBUG Segmenting atomic regions: 2025-01-31 09:49:29,318 DEBUG Processing 604/637 atomic regions from SNP 181172 to 181772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,407 DEBUG Processing 1/709 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:29,433 DEBUG Processing 354/712 atomic regions from SNP 106036 to 106636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,533 DEBUG Processing 605/637 atomic regions from SNP 181472 to 182072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,646 DEBUG Processing 355/712 atomic regions from SNP 106336 to 106936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,650 DEBUG Processing 2/709 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:29,757 DEBUG Processing 606/637 atomic regions from SNP 181772 to 182372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:29,867 DEBUG Processing 356/712 atomic regions from SNP 106636 to 107236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,875 DEBUG Processing 3/709 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:29,979 DEBUG Processing 607/637 atomic regions from SNP 182072 to 182672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,102 DEBUG Processing 357/712 atomic regions from SNP 106936 to 107536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,110 DEBUG Processing 4/709 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:30,198 DEBUG Processing 608/637 atomic regions from SNP 182372 to 182972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,341 DEBUG Processing 5/709 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:30,353 DEBUG Processing 358/712 atomic regions from SNP 107236 to 107836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,418 DEBUG Processing 609/637 atomic regions from SNP 182672 to 183272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,567 DEBUG Processing 6/709 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:30,581 DEBUG Processing 359/712 atomic regions from SNP 107536 to 108136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,638 DEBUG Processing 610/637 atomic regions from SNP 182972 to 183572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:30,803 DEBUG Processing 360/712 atomic regions from SNP 107836 to 108436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,819 DEBUG Processing 7/709 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:30,855 DEBUG Processing 611/637 atomic regions from SNP 183272 to 183872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,028 DEBUG Processing 361/712 atomic regions from SNP 108136 to 108736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,063 DEBUG Processing 8/709 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:31,074 DEBUG Processing 612/637 atomic regions from SNP 183572 to 184172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,255 DEBUG Processing 362/712 atomic regions from SNP 108436 to 109036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,297 DEBUG Processing 613/637 atomic regions from SNP 183872 to 184472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,307 DEBUG Processing 9/709 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:31,478 DEBUG Processing 363/712 atomic regions from SNP 108736 to 109336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,516 DEBUG Processing 614/637 atomic regions from SNP 184172 to 184772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,541 DEBUG Processing 10/709 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:31,703 DEBUG Processing 364/712 atomic regions from SNP 109036 to 109636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,741 DEBUG Processing 615/637 atomic regions from SNP 184472 to 185072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:31,778 DEBUG Processing 11/709 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:31,949 DEBUG Processing 365/712 atomic regions from SNP 109336 to 109936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,961 DEBUG Processing 616/637 atomic regions from SNP 184772 to 185372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,031 DEBUG Processing 12/709 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,171 DEBUG Processing 366/712 atomic regions from SNP 109636 to 110236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,175 DEBUG Processing 617/637 atomic regions from SNP 185072 to 185672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,285 DEBUG Processing 13/709 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,392 DEBUG Processing 618/637 atomic regions from SNP 185372 to 185972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,403 DEBUG Processing 367/712 atomic regions from SNP 109936 to 110536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,533 DEBUG Processing 14/709 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,620 DEBUG Processing 619/637 atomic regions from SNP 185672 to 186272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,638 DEBUG Processing 368/712 atomic regions from SNP 110236 to 110836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,651 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:49:32,652 DEBUG chr12: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.042 2025-01-31 09:49:32,762 DEBUG Processing 15/709 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,852 DEBUG Processing 620/637 atomic regions from SNP 185972 to 186572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:32,877 DEBUG Processing 369/712 atomic regions from SNP 110536 to 111136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,990 DEBUG Processing 16/709 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:33,078 DEBUG Processing 621/637 atomic regions from SNP 186272 to 186872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,103 DEBUG Processing 370/712 atomic regions from SNP 110836 to 111436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,213 DEBUG Processing 17/709 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:33,309 DEBUG Processing 622/637 atomic regions from SNP 186572 to 187172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,345 DEBUG Processing 371/712 atomic regions from SNP 111136 to 111736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,449 DEBUG Processing 18/709 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:33,543 DEBUG Processing 623/637 atomic regions from SNP 186872 to 187472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,572 DEBUG Processing 372/712 atomic regions from SNP 111436 to 112036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,679 DEBUG Processing 19/709 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:33,779 DEBUG Processing 624/637 atomic regions from SNP 187172 to 187772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:33,801 DEBUG Processing 373/712 atomic regions from SNP 111736 to 112336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,916 DEBUG Processing 20/709 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,008 DEBUG Processing 625/637 atomic regions from SNP 187472 to 188072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,047 DEBUG Processing 374/712 atomic regions from SNP 112036 to 112636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,169 DEBUG Processing 21/709 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,227 DEBUG Processing 626/637 atomic regions from SNP 187772 to 188372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,278 DEBUG Processing 375/712 atomic regions from SNP 112336 to 112936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,420 DEBUG Processing 22/709 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,441 DEBUG Processing 627/637 atomic regions from SNP 188072 to 188672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,513 DEBUG Processing 376/712 atomic regions from SNP 112636 to 113236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,663 DEBUG Processing 23/709 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,671 DEBUG Processing 628/637 atomic regions from SNP 188372 to 188972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,725 DEBUG chr12 total SNP count: 192342 2025-01-31 09:49:34,725 DEBUG chr12 length: 120129022 2025-01-31 09:49:34,725 DEBUG ----------------------------------------- 2025-01-31 09:49:34,725 INFO Processing SNPs in chr12 2025-01-31 09:49:34,734 DEBUG Processing 377/712 atomic regions from SNP 112936 to 113536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,888 DEBUG Processing 629/637 atomic regions from SNP 188672 to 189272 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:34,894 DEBUG Processing 24/709 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,920 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 192342)] 2025-01-31 09:49:34,959 DEBUG Processing 378/712 atomic regions from SNP 113236 to 113836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,056 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:35,106 DEBUG Processing 630/637 atomic regions from SNP 188972 to 189572 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,124 DEBUG Processing 25/709 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,176 DEBUG Processing 379/712 atomic regions from SNP 113536 to 114136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,328 DEBUG Processing 631/637 atomic regions from SNP 189272 to 189872 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,356 DEBUG Processing 26/709 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,396 DEBUG Processing 380/712 atomic regions from SNP 113836 to 114436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,549 DEBUG Processing 632/637 atomic regions from SNP 189572 to 190172 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,589 DEBUG Processing 27/709 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,618 DEBUG Processing 381/712 atomic regions from SNP 114136 to 114736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,766 DEBUG Processing 633/637 atomic regions from SNP 189872 to 190472 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:35,815 DEBUG Processing 28/709 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,832 DEBUG Processing 382/712 atomic regions from SNP 114436 to 115036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,983 DEBUG Processing 634/637 atomic regions from SNP 190172 to 190772 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,040 DEBUG Processing 29/709 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,046 DEBUG Processing 383/712 atomic regions from SNP 114736 to 115336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,208 DEBUG Processing 635/637 atomic regions from SNP 190472 to 191072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,262 DEBUG Processing 384/712 atomic regions from SNP 115036 to 115636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,273 DEBUG Processing 30/709 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,428 DEBUG Processing 636/637 atomic regions from SNP 190772 to 191372 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,475 DEBUG Processing 385/712 atomic regions from SNP 115336 to 115936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,505 DEBUG Processing 31/709 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,649 DEBUG Processing 637/637 atomic regions from SNP 191072 to 191672 for chr14 (subchromosome 2 of 2). 2025-01-31 09:49:36,692 DEBUG Processing 386/712 atomic regions from SNP 115636 to 116236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,733 DEBUG Processing 32/709 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,794 DEBUG Unique SNPs positions in subchromosome 2: 191673 2025-01-31 09:49:36,913 DEBUG Processing 387/712 atomic regions from SNP 115936 to 116536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,965 DEBUG Processing 33/709 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,134 DEBUG Processing 388/712 atomic regions from SNP 116236 to 116836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,200 DEBUG Processing 34/709 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,351 DEBUG Processing 389/712 atomic regions from SNP 116536 to 117136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,431 DEBUG Processing 35/709 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,569 DEBUG Processing 390/712 atomic regions from SNP 116836 to 117436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,664 DEBUG Processing 36/709 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,792 DEBUG Processing 391/712 atomic regions from SNP 117136 to 117736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,902 DEBUG Processing 37/709 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,011 DEBUG Processing 392/712 atomic regions from SNP 117436 to 118036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,139 DEBUG Processing 38/709 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,239 DEBUG Processing 393/712 atomic regions from SNP 117736 to 118336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,373 DEBUG Processing 39/709 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,466 DEBUG Processing 394/712 atomic regions from SNP 118036 to 118636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,599 DEBUG Processing 40/709 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,690 DEBUG Processing 395/712 atomic regions from SNP 118336 to 118936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,826 DEBUG Processing 41/709 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,904 DEBUG Processing 396/712 atomic regions from SNP 118636 to 119236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,057 DEBUG Processing 42/709 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,116 DEBUG Processing 397/712 atomic regions from SNP 118936 to 119536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,281 DEBUG Segmenting atomic regions: 2025-01-31 09:49:39,285 DEBUG Processing 43/709 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,333 DEBUG Processing 398/712 atomic regions from SNP 119236 to 119836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,371 DEBUG Processing 1/667 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:39,514 DEBUG Processing 44/709 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,550 DEBUG Processing 399/712 atomic regions from SNP 119536 to 120136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,577 DEBUG Processing 2/667 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:39,743 DEBUG Processing 45/709 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,764 DEBUG Subchromosome time: 159.38786753092427, subchromosome SNPs: 191673 2025-01-31 09:49:39,765 DEBUG Estimated BADs: [0.33, 1.64, 6.57, 3.29, 0.41, 1.64, 4.93, 3.29, 0.33, 1.64, 0.41, 0.82, 3.29] SNP counts: [138, 20688, 3792, 27998, 4808, 13140, 7074, 44672, 7778, 3293, 16579, 35982, 5869] SNP IDs counts: [138, 20688, 3792, 27998, 4808, 13140, 7074, 44672, 7778, 3293, 16579, 35982, 5869] Critical gap: 634792bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.03Mbp], 5.13Mbp[0.71Mbp], 19.70Mbp, 21.70Mbp, 37.36Mbp, 40.45Mbp, 50.78Mbp, 55.53Mbp, 80.42Mbp, 85.89Mbp, 87.78Mbp, 99.04Mbp, 121.26Mbp, 124.90Mbp] 2025-01-31 09:49:39,765 DEBUG chr14 time: 159.38842816092074 s 2025-01-31 09:49:39,782 DEBUG Processing 400/712 atomic regions from SNP 119836 to 120436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,802 DEBUG Processing 3/667 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:39,896 DEBUG chr14: Fitting background model for 13 segments 2025-01-31 09:49:39,976 DEBUG Processing 46/709 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,018 DEBUG Processing 4/667 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,018 DEBUG Processing 401/712 atomic regions from SNP 120136 to 120736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,217 DEBUG Processing 47/709 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,243 DEBUG Processing 5/667 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,256 DEBUG Processing 402/712 atomic regions from SNP 120436 to 121036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,448 DEBUG Processing 48/709 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,459 DEBUG Processing 6/667 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,488 DEBUG Processing 403/712 atomic regions from SNP 120736 to 121336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,676 DEBUG Processing 7/667 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,693 DEBUG Processing 49/709 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,726 DEBUG Processing 404/712 atomic regions from SNP 121036 to 121636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,892 DEBUG Processing 8/667 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,929 DEBUG Processing 50/709 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,955 DEBUG Processing 405/712 atomic regions from SNP 121336 to 121936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,110 DEBUG Processing 9/667 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,162 DEBUG Processing 51/709 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,182 DEBUG Processing 406/712 atomic regions from SNP 121636 to 122236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,323 DEBUG Processing 10/667 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,400 DEBUG Processing 52/709 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,409 DEBUG Processing 407/712 atomic regions from SNP 121936 to 122536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,541 DEBUG Processing 11/667 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,631 DEBUG Processing 53/709 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,635 DEBUG Processing 408/712 atomic regions from SNP 122236 to 122836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,749 DEBUG Processing 12/667 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,851 DEBUG Processing 409/712 atomic regions from SNP 122536 to 123136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,859 DEBUG Processing 54/709 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,954 DEBUG Processing 13/667 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,078 DEBUG Processing 410/712 atomic regions from SNP 122836 to 123436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,093 DEBUG Processing 55/709 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,158 DEBUG Processing 14/667 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,318 DEBUG Processing 411/712 atomic regions from SNP 123136 to 123736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,325 DEBUG Processing 56/709 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,374 DEBUG Processing 15/667 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,557 DEBUG Processing 57/709 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,558 DEBUG Processing 412/712 atomic regions from SNP 123436 to 124036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,592 DEBUG Processing 16/667 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,783 DEBUG Processing 413/712 atomic regions from SNP 123736 to 124336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,790 DEBUG Processing 58/709 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,809 DEBUG Processing 17/667 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,009 DEBUG Processing 414/712 atomic regions from SNP 124036 to 124636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,024 DEBUG Processing 18/667 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,026 DEBUG Processing 59/709 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,233 DEBUG Processing 415/712 atomic regions from SNP 124336 to 124936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,236 DEBUG Processing 19/667 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,255 DEBUG Processing 60/709 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,448 DEBUG Processing 20/667 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,456 DEBUG Processing 416/712 atomic regions from SNP 124636 to 125236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,479 DEBUG Processing 61/709 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,663 DEBUG Processing 21/667 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,684 DEBUG Processing 417/712 atomic regions from SNP 124936 to 125536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,708 DEBUG Processing 62/709 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,886 DEBUG Processing 22/667 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,915 DEBUG Processing 418/712 atomic regions from SNP 125236 to 125836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,940 DEBUG Processing 63/709 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,105 DEBUG Processing 23/667 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,148 DEBUG Processing 419/712 atomic regions from SNP 125536 to 126136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,175 DEBUG Processing 64/709 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,321 DEBUG Processing 24/667 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,379 DEBUG Processing 420/712 atomic regions from SNP 125836 to 126436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,405 DEBUG Processing 65/709 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,532 DEBUG Processing 25/667 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,608 DEBUG Processing 421/712 atomic regions from SNP 126136 to 126736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,638 DEBUG Processing 66/709 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,739 DEBUG Processing 26/667 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,845 DEBUG Processing 422/712 atomic regions from SNP 126436 to 127036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,879 DEBUG Processing 67/709 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,946 DEBUG Processing 27/667 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,071 DEBUG Processing 423/712 atomic regions from SNP 126736 to 127336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,111 DEBUG Processing 68/709 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,153 DEBUG Processing 28/667 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,296 DEBUG Processing 424/712 atomic regions from SNP 127036 to 127636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,341 DEBUG Processing 69/709 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,371 DEBUG Processing 29/667 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,525 DEBUG Processing 425/712 atomic regions from SNP 127336 to 127936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,575 DEBUG Processing 70/709 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,591 DEBUG Processing 30/667 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,756 DEBUG Processing 426/712 atomic regions from SNP 127636 to 128236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,810 DEBUG Processing 71/709 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,812 DEBUG Processing 31/667 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,986 DEBUG Processing 427/712 atomic regions from SNP 127936 to 128536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,050 DEBUG Processing 72/709 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,064 DEBUG Processing 32/667 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,227 DEBUG Processing 428/712 atomic regions from SNP 128236 to 128836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,285 DEBUG Processing 33/667 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,287 DEBUG Processing 73/709 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,448 DEBUG Processing 429/712 atomic regions from SNP 128536 to 129136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,507 DEBUG Processing 34/667 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,528 DEBUG Processing 74/709 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,668 DEBUG Processing 430/712 atomic regions from SNP 128836 to 129436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,718 DEBUG Processing 35/667 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,765 DEBUG Processing 75/709 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,891 DEBUG Processing 431/712 atomic regions from SNP 129136 to 129736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,928 DEBUG Processing 36/667 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,993 DEBUG Processing 76/709 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,118 DEBUG Processing 432/712 atomic regions from SNP 129436 to 130036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,140 DEBUG Processing 37/667 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,222 DEBUG Processing 77/709 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,346 DEBUG Processing 433/712 atomic regions from SNP 129736 to 130336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,355 DEBUG Processing 38/667 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,454 DEBUG Processing 78/709 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,562 DEBUG Processing 39/667 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,566 DEBUG Processing 434/712 atomic regions from SNP 130036 to 130636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,683 DEBUG Processing 79/709 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,775 DEBUG Processing 40/667 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,791 DEBUG Processing 435/712 atomic regions from SNP 130336 to 130936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,903 DEBUG Processing 80/709 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,987 DEBUG Processing 41/667 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,012 DEBUG Processing 436/712 atomic regions from SNP 130636 to 131236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,129 DEBUG Processing 81/709 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,193 DEBUG Processing 42/667 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,226 DEBUG Processing 437/712 atomic regions from SNP 130936 to 131536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,361 DEBUG Processing 82/709 atomic regions from SNP 24381 to 24981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,403 DEBUG Processing 43/667 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,446 DEBUG Processing 438/712 atomic regions from SNP 131236 to 131836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,590 DEBUG Processing 83/709 atomic regions from SNP 24681 to 25281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,613 DEBUG Processing 44/667 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,669 DEBUG Processing 439/712 atomic regions from SNP 131536 to 132136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,821 DEBUG Processing 45/667 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,821 DEBUG Processing 84/709 atomic regions from SNP 24981 to 25581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,894 DEBUG Processing 440/712 atomic regions from SNP 131836 to 132436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,028 DEBUG Processing 46/667 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,049 DEBUG Processing 85/709 atomic regions from SNP 25281 to 25881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,116 DEBUG Processing 441/712 atomic regions from SNP 132136 to 132736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,229 DEBUG Processing 47/667 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,280 DEBUG Processing 86/709 atomic regions from SNP 25581 to 26181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,333 DEBUG Processing 442/712 atomic regions from SNP 132436 to 133036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,429 DEBUG Processing 48/667 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,502 DEBUG Processing 87/709 atomic regions from SNP 25881 to 26481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,546 DEBUG Processing 443/712 atomic regions from SNP 132736 to 133336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,628 DEBUG Processing 49/667 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,721 DEBUG Processing 88/709 atomic regions from SNP 26181 to 26781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,761 DEBUG Processing 444/712 atomic regions from SNP 133036 to 133636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,841 DEBUG Processing 50/667 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,935 DEBUG Processing 89/709 atomic regions from SNP 26481 to 27081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,986 DEBUG Processing 445/712 atomic regions from SNP 133336 to 133936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,055 DEBUG Processing 51/667 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,155 DEBUG Processing 90/709 atomic regions from SNP 26781 to 27381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,222 DEBUG Processing 446/712 atomic regions from SNP 133636 to 134236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,264 DEBUG Processing 52/667 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,379 DEBUG Processing 91/709 atomic regions from SNP 27081 to 27681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,438 DEBUG Processing 447/712 atomic regions from SNP 133936 to 134536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,473 DEBUG Processing 53/667 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,600 DEBUG Processing 92/709 atomic regions from SNP 27381 to 27981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,652 DEBUG Processing 448/712 atomic regions from SNP 134236 to 134836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,681 DEBUG Processing 54/667 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,818 DEBUG Processing 93/709 atomic regions from SNP 27681 to 28281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,863 DEBUG Processing 449/712 atomic regions from SNP 134536 to 135136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,883 DEBUG Processing 55/667 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,038 DEBUG Processing 94/709 atomic regions from SNP 27981 to 28581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,071 DEBUG Processing 450/712 atomic regions from SNP 134836 to 135436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,077 DEBUG Processing 56/667 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,263 DEBUG Processing 95/709 atomic regions from SNP 28281 to 28881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,283 DEBUG Processing 57/667 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,291 DEBUG Processing 451/712 atomic regions from SNP 135136 to 135736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,487 DEBUG Processing 96/709 atomic regions from SNP 28581 to 29181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,489 DEBUG Processing 58/667 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,512 DEBUG Processing 452/712 atomic regions from SNP 135436 to 136036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,697 DEBUG Processing 59/667 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,701 DEBUG Processing 97/709 atomic regions from SNP 28881 to 29481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,733 DEBUG Processing 453/712 atomic regions from SNP 135736 to 136336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,903 DEBUG Processing 60/667 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,927 DEBUG Processing 98/709 atomic regions from SNP 29181 to 29781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,954 DEBUG Processing 454/712 atomic regions from SNP 136036 to 136636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,112 DEBUG Processing 61/667 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,163 DEBUG Processing 99/709 atomic regions from SNP 29481 to 30081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,180 DEBUG Processing 455/712 atomic regions from SNP 136336 to 136936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,315 DEBUG Processing 62/667 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,383 DEBUG Processing 100/709 atomic regions from SNP 29781 to 30381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,398 DEBUG Processing 456/712 atomic regions from SNP 136636 to 137236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,521 DEBUG Processing 63/667 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,597 DEBUG Processing 101/709 atomic regions from SNP 30081 to 30681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,616 DEBUG Processing 457/712 atomic regions from SNP 136936 to 137536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,728 DEBUG Processing 64/667 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,815 DEBUG Processing 102/709 atomic regions from SNP 30381 to 30981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,832 DEBUG Processing 458/712 atomic regions from SNP 137236 to 137836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,936 DEBUG Processing 65/667 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,041 DEBUG Processing 103/709 atomic regions from SNP 30681 to 31281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,048 DEBUG Processing 459/712 atomic regions from SNP 137536 to 138136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,147 DEBUG Processing 66/667 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,265 DEBUG Processing 104/709 atomic regions from SNP 30981 to 31581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,267 DEBUG Processing 460/712 atomic regions from SNP 137836 to 138436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,362 DEBUG Processing 67/667 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,488 DEBUG Processing 105/709 atomic regions from SNP 31281 to 31881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,490 DEBUG Processing 461/712 atomic regions from SNP 138136 to 138736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,572 DEBUG Processing 68/667 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,714 DEBUG Processing 462/712 atomic regions from SNP 138436 to 139036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,715 DEBUG Processing 106/709 atomic regions from SNP 31581 to 32181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,788 DEBUG Processing 69/667 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,939 DEBUG Processing 107/709 atomic regions from SNP 31881 to 32481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,946 DEBUG Processing 463/712 atomic regions from SNP 138736 to 139336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,006 DEBUG Processing 70/667 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,170 DEBUG Processing 108/709 atomic regions from SNP 32181 to 32781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,176 DEBUG Processing 464/712 atomic regions from SNP 139036 to 139636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,224 DEBUG Processing 71/667 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,399 DEBUG Processing 109/709 atomic regions from SNP 32481 to 33081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,408 DEBUG Processing 465/712 atomic regions from SNP 139336 to 139936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,438 DEBUG Processing 72/667 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,643 DEBUG Processing 110/709 atomic regions from SNP 32781 to 33381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,645 DEBUG Processing 466/712 atomic regions from SNP 139636 to 140236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,659 DEBUG Processing 73/667 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,882 DEBUG Processing 111/709 atomic regions from SNP 33081 to 33681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,886 DEBUG Processing 467/712 atomic regions from SNP 139936 to 140536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,888 DEBUG Processing 74/667 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,113 DEBUG Processing 75/667 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,128 DEBUG Processing 468/712 atomic regions from SNP 140236 to 140836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,128 DEBUG Processing 112/709 atomic regions from SNP 33381 to 33981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,341 DEBUG Processing 76/667 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,377 DEBUG Processing 469/712 atomic regions from SNP 140536 to 141136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,395 DEBUG Processing 113/709 atomic regions from SNP 33681 to 34281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,560 DEBUG Processing 77/667 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,622 DEBUG Processing 470/712 atomic regions from SNP 140836 to 141436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,645 DEBUG Processing 114/709 atomic regions from SNP 33981 to 34581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,773 DEBUG Processing 78/667 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,856 DEBUG Processing 471/712 atomic regions from SNP 141136 to 141736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,880 DEBUG Processing 115/709 atomic regions from SNP 34281 to 34881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,987 DEBUG Processing 79/667 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,089 DEBUG Processing 472/712 atomic regions from SNP 141436 to 142036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,121 DEBUG Processing 116/709 atomic regions from SNP 34581 to 35181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,202 DEBUG Processing 80/667 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,321 DEBUG Processing 473/712 atomic regions from SNP 141736 to 142336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,352 DEBUG Processing 117/709 atomic regions from SNP 34881 to 35481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,420 DEBUG Processing 81/667 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,566 DEBUG Processing 474/712 atomic regions from SNP 142036 to 142636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,602 DEBUG Processing 118/709 atomic regions from SNP 35181 to 35781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,639 DEBUG Processing 82/667 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,803 DEBUG Processing 475/712 atomic regions from SNP 142336 to 142936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,837 DEBUG Processing 119/709 atomic regions from SNP 35481 to 36081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,857 DEBUG Processing 83/667 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,037 DEBUG Processing 476/712 atomic regions from SNP 142636 to 143236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,067 DEBUG Processing 120/709 atomic regions from SNP 35781 to 36381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,077 DEBUG Processing 84/667 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,080 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:49:57,272 DEBUG Processing 477/712 atomic regions from SNP 142936 to 143536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,296 DEBUG Processing 85/667 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,302 DEBUG Processing 121/709 atomic regions from SNP 36081 to 36681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,506 DEBUG Processing 478/712 atomic regions from SNP 143236 to 143836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,516 DEBUG Processing 86/667 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,532 DEBUG Processing 122/709 atomic regions from SNP 36381 to 36981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,537 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:49:57,738 DEBUG Processing 87/667 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,745 DEBUG Processing 479/712 atomic regions from SNP 143536 to 144136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,762 DEBUG Processing 123/709 atomic regions from SNP 36681 to 37281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,961 DEBUG Processing 88/667 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,978 DEBUG Processing 480/712 atomic regions from SNP 143836 to 144436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,999 DEBUG Processing 124/709 atomic regions from SNP 36981 to 37581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,182 DEBUG Processing 89/667 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,209 DEBUG Processing 481/712 atomic regions from SNP 144136 to 144736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,228 DEBUG Processing 125/709 atomic regions from SNP 37281 to 37881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,341 DEBUG Segmenting atomic regions: 2025-01-31 09:49:58,405 DEBUG Processing 90/667 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,430 DEBUG Processing 1/640 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,444 DEBUG Processing 482/712 atomic regions from SNP 144436 to 145036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,459 DEBUG Processing 126/709 atomic regions from SNP 37581 to 38181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,634 DEBUG Processing 91/667 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,657 DEBUG Processing 2/640 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,688 DEBUG Processing 483/712 atomic regions from SNP 144736 to 145336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,697 DEBUG Processing 127/709 atomic regions from SNP 37881 to 38481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,850 DEBUG Processing 92/667 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,874 DEBUG Processing 3/640 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,917 DEBUG Processing 128/709 atomic regions from SNP 38181 to 38781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,926 DEBUG Processing 484/712 atomic regions from SNP 145036 to 145636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,064 DEBUG Processing 93/667 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,091 DEBUG Processing 4/640 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,140 DEBUG Processing 129/709 atomic regions from SNP 38481 to 39081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,161 DEBUG Processing 485/712 atomic regions from SNP 145336 to 145936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,279 DEBUG Processing 94/667 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,305 DEBUG Processing 5/640 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,370 DEBUG Processing 130/709 atomic regions from SNP 38781 to 39381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,400 DEBUG Processing 486/712 atomic regions from SNP 145636 to 146236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,490 DEBUG Processing 95/667 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,518 DEBUG Processing 6/640 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,598 DEBUG Processing 131/709 atomic regions from SNP 39081 to 39681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,632 DEBUG Processing 487/712 atomic regions from SNP 145936 to 146536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,702 DEBUG Processing 96/667 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,730 DEBUG Processing 7/640 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,828 DEBUG Processing 132/709 atomic regions from SNP 39381 to 39981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,866 DEBUG Processing 488/712 atomic regions from SNP 146236 to 146836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,921 DEBUG Processing 97/667 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,946 DEBUG Processing 8/640 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,052 DEBUG Processing 133/709 atomic regions from SNP 39681 to 40281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,094 DEBUG Processing 489/712 atomic regions from SNP 146536 to 147136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,140 DEBUG Processing 98/667 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,164 DEBUG Processing 9/640 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,281 DEBUG Processing 134/709 atomic regions from SNP 39981 to 40581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,321 DEBUG Processing 490/712 atomic regions from SNP 146836 to 147436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,361 DEBUG Processing 99/667 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,372 DEBUG Processing 10/640 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,512 DEBUG Processing 135/709 atomic regions from SNP 40281 to 40881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,556 DEBUG Processing 491/712 atomic regions from SNP 147136 to 147736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,587 DEBUG Processing 11/640 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,607 DEBUG Processing 100/667 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,739 DEBUG Processing 136/709 atomic regions from SNP 40581 to 41181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,787 DEBUG Processing 492/712 atomic regions from SNP 147436 to 148036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,813 DEBUG Processing 12/640 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,819 DEBUG Processing 101/667 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,954 DEBUG Processing 137/709 atomic regions from SNP 40881 to 41481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,012 DEBUG Processing 493/712 atomic regions from SNP 147736 to 148336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,019 DEBUG Processing 13/640 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,028 DEBUG Processing 102/667 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,170 DEBUG Processing 138/709 atomic regions from SNP 41181 to 41781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,231 DEBUG Processing 14/640 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,239 DEBUG Processing 494/712 atomic regions from SNP 148036 to 148636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,276 DEBUG Processing 103/667 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,390 DEBUG Processing 139/709 atomic regions from SNP 41481 to 42081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,441 DEBUG Processing 15/640 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,467 DEBUG Processing 495/712 atomic regions from SNP 148336 to 148936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,527 DEBUG Processing 104/667 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,610 DEBUG Processing 140/709 atomic regions from SNP 41781 to 42381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,649 DEBUG Processing 16/640 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,691 DEBUG Processing 496/712 atomic regions from SNP 148636 to 149236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,762 DEBUG Processing 105/667 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,830 DEBUG Processing 141/709 atomic regions from SNP 42081 to 42681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,856 DEBUG Processing 17/640 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,914 DEBUG Processing 497/712 atomic regions from SNP 148936 to 149536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,976 DEBUG Processing 106/667 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,068 DEBUG Processing 142/709 atomic regions from SNP 42381 to 42981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,071 DEBUG Processing 18/640 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,146 DEBUG Processing 498/712 atomic regions from SNP 149236 to 149836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,192 DEBUG Processing 107/667 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,281 DEBUG Processing 19/640 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,291 DEBUG Processing 143/709 atomic regions from SNP 42681 to 43281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,371 DEBUG Processing 499/712 atomic regions from SNP 149536 to 150136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,401 DEBUG Processing 108/667 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,487 DEBUG Processing 20/640 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,503 DEBUG Processing 144/709 atomic regions from SNP 42981 to 43581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,594 DEBUG Processing 500/712 atomic regions from SNP 149836 to 150436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,611 DEBUG Processing 109/667 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,688 DEBUG Processing 21/640 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,711 DEBUG Processing 145/709 atomic regions from SNP 43281 to 43881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,816 DEBUG Processing 501/712 atomic regions from SNP 150136 to 150736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,827 DEBUG Processing 110/667 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,893 DEBUG Processing 22/640 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,916 DEBUG Processing 146/709 atomic regions from SNP 43581 to 44181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,033 DEBUG Processing 502/712 atomic regions from SNP 150436 to 151036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,062 DEBUG Processing 111/667 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,092 DEBUG Processing 23/640 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,117 DEBUG Processing 147/709 atomic regions from SNP 43881 to 44481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,252 DEBUG Processing 503/712 atomic regions from SNP 150736 to 151336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,291 DEBUG Processing 24/640 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,296 DEBUG Processing 112/667 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,319 DEBUG Processing 148/709 atomic regions from SNP 44181 to 44781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,477 DEBUG Processing 504/712 atomic regions from SNP 151036 to 151636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,492 DEBUG Processing 25/640 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,522 DEBUG Processing 149/709 atomic regions from SNP 44481 to 45081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,534 DEBUG Processing 113/667 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,699 DEBUG Processing 26/640 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,702 DEBUG Processing 505/712 atomic regions from SNP 151336 to 151936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,728 DEBUG Processing 150/709 atomic regions from SNP 44781 to 45381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,743 DEBUG Processing 114/667 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,907 DEBUG Processing 27/640 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,928 DEBUG Processing 506/712 atomic regions from SNP 151636 to 152236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,934 DEBUG Processing 151/709 atomic regions from SNP 45081 to 45681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,956 DEBUG Processing 115/667 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,113 DEBUG Processing 28/640 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,142 DEBUG Processing 152/709 atomic regions from SNP 45381 to 45981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,155 DEBUG Processing 507/712 atomic regions from SNP 151936 to 152536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,171 DEBUG Processing 116/667 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,313 DEBUG Processing 29/640 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,344 DEBUG Processing 153/709 atomic regions from SNP 45681 to 46281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,378 DEBUG Processing 117/667 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,378 DEBUG Processing 508/712 atomic regions from SNP 152236 to 152836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,515 DEBUG Processing 30/640 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,546 DEBUG Processing 154/709 atomic regions from SNP 45981 to 46581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,598 DEBUG Processing 118/667 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,599 DEBUG Processing 509/712 atomic regions from SNP 152536 to 153136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,722 DEBUG Processing 31/640 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,756 DEBUG Processing 155/709 atomic regions from SNP 46281 to 46881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,810 DEBUG Processing 119/667 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,819 DEBUG Processing 510/712 atomic regions from SNP 152836 to 153436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,930 DEBUG Processing 32/640 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,962 DEBUG Processing 156/709 atomic regions from SNP 46581 to 47181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,014 DEBUG Processing 120/667 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,036 DEBUG Processing 511/712 atomic regions from SNP 153136 to 153736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,139 DEBUG Processing 33/640 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,172 DEBUG Processing 157/709 atomic regions from SNP 46881 to 47481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,216 DEBUG Processing 121/667 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,252 DEBUG Processing 512/712 atomic regions from SNP 153436 to 154036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,345 DEBUG Processing 34/640 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,382 DEBUG Processing 158/709 atomic regions from SNP 47181 to 47781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,422 DEBUG Processing 122/667 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,469 DEBUG Processing 513/712 atomic regions from SNP 153736 to 154336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,550 DEBUG Processing 35/640 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,591 DEBUG Processing 159/709 atomic regions from SNP 47481 to 48081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,631 DEBUG Processing 123/667 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,688 DEBUG Processing 514/712 atomic regions from SNP 154036 to 154636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,754 DEBUG Processing 36/640 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,799 DEBUG Processing 160/709 atomic regions from SNP 47781 to 48381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,844 DEBUG Processing 124/667 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,911 DEBUG Processing 515/712 atomic regions from SNP 154336 to 154936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,961 DEBUG Processing 37/640 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,008 DEBUG Processing 161/709 atomic regions from SNP 48081 to 48681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,056 DEBUG Processing 125/667 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,133 DEBUG Processing 516/712 atomic regions from SNP 154636 to 155236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,163 DEBUG Processing 38/640 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,230 DEBUG Processing 162/709 atomic regions from SNP 48381 to 48981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,269 DEBUG Processing 126/667 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,353 DEBUG Processing 517/712 atomic regions from SNP 154936 to 155536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,364 DEBUG Processing 39/640 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,447 DEBUG Processing 163/709 atomic regions from SNP 48681 to 49281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,480 DEBUG Processing 127/667 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,568 DEBUG Processing 40/640 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,575 DEBUG Processing 518/712 atomic regions from SNP 155236 to 155836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,665 DEBUG Processing 164/709 atomic regions from SNP 48981 to 49581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,692 DEBUG Processing 128/667 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,769 DEBUG Processing 41/640 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,796 DEBUG Processing 519/712 atomic regions from SNP 155536 to 156136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,905 DEBUG Processing 165/709 atomic regions from SNP 49281 to 49881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,905 DEBUG Processing 129/667 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,975 DEBUG Processing 42/640 atomic regions from SNP 12341 to 12941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,018 DEBUG Processing 520/712 atomic regions from SNP 155836 to 156436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,118 DEBUG Processing 130/667 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,122 DEBUG Processing 166/709 atomic regions from SNP 49581 to 50181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,182 DEBUG Processing 43/640 atomic regions from SNP 12641 to 13241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,239 DEBUG Processing 521/712 atomic regions from SNP 156136 to 156736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,330 DEBUG Processing 131/667 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,343 DEBUG Processing 167/709 atomic regions from SNP 49881 to 50481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,389 DEBUG Processing 44/640 atomic regions from SNP 12941 to 13541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,459 DEBUG Processing 522/712 atomic regions from SNP 156436 to 157036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,538 DEBUG Processing 132/667 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,561 DEBUG Processing 168/709 atomic regions from SNP 50181 to 50781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,599 DEBUG Processing 45/640 atomic regions from SNP 13241 to 13841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,683 DEBUG Processing 523/712 atomic regions from SNP 156736 to 157336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,749 DEBUG Processing 133/667 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,781 DEBUG Processing 169/709 atomic regions from SNP 50481 to 51081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,804 DEBUG Processing 46/640 atomic regions from SNP 13541 to 14141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,912 DEBUG Processing 524/712 atomic regions from SNP 157036 to 157636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,913 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:50:07,914 DEBUG chr16: Signal quantile: 0.995. signal threshold: 16. Best RMSEA: 0.031 2025-01-31 09:50:07,969 DEBUG Processing 134/667 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,019 DEBUG Processing 47/640 atomic regions from SNP 13841 to 14441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,021 DEBUG Processing 170/709 atomic regions from SNP 50781 to 51381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,136 DEBUG Processing 525/712 atomic regions from SNP 157336 to 157936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,184 DEBUG Processing 135/667 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,230 DEBUG Processing 48/640 atomic regions from SNP 14141 to 14741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,241 DEBUG Processing 171/709 atomic regions from SNP 51081 to 51681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,356 DEBUG Processing 526/712 atomic regions from SNP 157636 to 158236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,398 DEBUG Processing 136/667 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,443 DEBUG Processing 49/640 atomic regions from SNP 14441 to 15041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,457 DEBUG Processing 172/709 atomic regions from SNP 51381 to 51981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,457 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:50:08,459 DEBUG chr15: Signal quantile: 0.995. signal threshold: 20. Best RMSEA: 0.025 2025-01-31 09:50:08,583 DEBUG Processing 527/712 atomic regions from SNP 157936 to 158536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,618 DEBUG Processing 137/667 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,670 DEBUG Processing 50/640 atomic regions from SNP 14741 to 15341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,676 DEBUG Processing 173/709 atomic regions from SNP 51681 to 52281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,805 DEBUG Processing 528/712 atomic regions from SNP 158236 to 158836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,831 DEBUG Processing 138/667 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,883 DEBUG Processing 51/640 atomic regions from SNP 15041 to 15641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,898 DEBUG Processing 174/709 atomic regions from SNP 51981 to 52581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,032 DEBUG Processing 529/712 atomic regions from SNP 158536 to 159136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,044 DEBUG Processing 139/667 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,093 DEBUG Processing 52/640 atomic regions from SNP 15341 to 15941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,119 DEBUG Processing 175/709 atomic regions from SNP 52281 to 52881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,259 DEBUG Processing 140/667 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,260 DEBUG Processing 530/712 atomic regions from SNP 158836 to 159436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,302 DEBUG Processing 53/640 atomic regions from SNP 15641 to 16241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,330 DEBUG Processing 176/709 atomic regions from SNP 52581 to 53181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,470 DEBUG Processing 141/667 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,489 DEBUG Processing 531/712 atomic regions from SNP 159136 to 159736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,513 DEBUG Processing 54/640 atomic regions from SNP 15941 to 16541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,544 DEBUG Processing 177/709 atomic regions from SNP 52881 to 53481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,683 DEBUG Processing 142/667 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,710 DEBUG chr16 total SNP count: 163870 2025-01-31 09:50:09,710 DEBUG chr16 length: 98207768 2025-01-31 09:50:09,710 DEBUG ----------------------------------------- 2025-01-31 09:50:09,710 INFO Processing SNPs in chr16 2025-01-31 09:50:09,717 DEBUG Processing 532/712 atomic regions from SNP 159436 to 160036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,724 DEBUG Processing 55/640 atomic regions from SNP 16241 to 16841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,766 DEBUG Processing 178/709 atomic regions from SNP 53181 to 53781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,873 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 163870)] 2025-01-31 09:50:09,889 DEBUG Processing 143/667 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,926 DEBUG Processing 56/640 atomic regions from SNP 16541 to 17141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,940 DEBUG Processing 533/712 atomic regions from SNP 159736 to 160336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,975 DEBUG Processing 179/709 atomic regions from SNP 53481 to 54081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,984 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:10,089 DEBUG Processing 144/667 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,126 DEBUG Processing 57/640 atomic regions from SNP 16841 to 17441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,160 DEBUG Processing 534/712 atomic regions from SNP 160036 to 160636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,183 DEBUG Processing 180/709 atomic regions from SNP 53781 to 54381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,304 DEBUG Processing 145/667 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,344 DEBUG Processing 58/640 atomic regions from SNP 17141 to 17741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,377 DEBUG chr15 total SNP count: 176095 2025-01-31 09:50:10,377 DEBUG chr15 length: 104043685 2025-01-31 09:50:10,377 DEBUG ----------------------------------------- 2025-01-31 09:50:10,377 INFO Processing SNPs in chr15 2025-01-31 09:50:10,405 DEBUG Processing 535/712 atomic regions from SNP 160336 to 160936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,408 DEBUG Processing 181/709 atomic regions from SNP 54081 to 54681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,517 DEBUG Processing 146/667 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,542 DEBUG Processing 59/640 atomic regions from SNP 17441 to 18041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,551 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 176095)] 2025-01-31 09:50:10,611 DEBUG Processing 182/709 atomic regions from SNP 54381 to 54981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,620 DEBUG Processing 536/712 atomic regions from SNP 160636 to 161236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,668 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:10,731 DEBUG Processing 147/667 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,750 DEBUG Processing 60/640 atomic regions from SNP 17741 to 18341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,818 DEBUG Processing 183/709 atomic regions from SNP 54681 to 55281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,839 DEBUG Processing 537/712 atomic regions from SNP 160936 to 161536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,944 DEBUG Processing 148/667 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,955 DEBUG Processing 61/640 atomic regions from SNP 18041 to 18641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,028 DEBUG Processing 184/709 atomic regions from SNP 54981 to 55581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,064 DEBUG Processing 538/712 atomic regions from SNP 161236 to 161836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,175 DEBUG Processing 149/667 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,189 DEBUG Processing 62/640 atomic regions from SNP 18341 to 18941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,259 DEBUG Processing 185/709 atomic regions from SNP 55281 to 55881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,304 DEBUG Processing 539/712 atomic regions from SNP 161536 to 162136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,391 DEBUG Processing 150/667 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,395 DEBUG Processing 63/640 atomic regions from SNP 18641 to 19241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,464 DEBUG Processing 186/709 atomic regions from SNP 55581 to 56181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,516 DEBUG Processing 540/712 atomic regions from SNP 161836 to 162436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,598 DEBUG Processing 64/640 atomic regions from SNP 18941 to 19541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,603 DEBUG Processing 151/667 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,670 DEBUG Processing 187/709 atomic regions from SNP 55881 to 56481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,733 DEBUG Processing 541/712 atomic regions from SNP 162136 to 162736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,804 DEBUG Processing 65/640 atomic regions from SNP 19241 to 19841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,813 DEBUG Processing 152/667 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,887 DEBUG Processing 188/709 atomic regions from SNP 56181 to 56781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,965 DEBUG Processing 542/712 atomic regions from SNP 162436 to 163036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,008 DEBUG Processing 66/640 atomic regions from SNP 19541 to 20141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,024 DEBUG Processing 153/667 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,100 DEBUG Processing 189/709 atomic regions from SNP 56481 to 57081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,193 DEBUG Processing 543/712 atomic regions from SNP 162736 to 163336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,219 DEBUG Processing 67/640 atomic regions from SNP 19841 to 20441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,239 DEBUG Processing 154/667 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,318 DEBUG Processing 190/709 atomic regions from SNP 56781 to 57381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,421 DEBUG Processing 544/712 atomic regions from SNP 163036 to 163636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,426 DEBUG Processing 68/640 atomic regions from SNP 20141 to 20741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,447 DEBUG Processing 155/667 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,525 DEBUG Processing 191/709 atomic regions from SNP 57081 to 57681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,639 DEBUG Processing 69/640 atomic regions from SNP 20441 to 21041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,652 DEBUG Processing 545/712 atomic regions from SNP 163336 to 163936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,662 DEBUG Processing 156/667 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,738 DEBUG Processing 192/709 atomic regions from SNP 57381 to 57981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,854 DEBUG Processing 70/640 atomic regions from SNP 20741 to 21341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,880 DEBUG Processing 157/667 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,901 DEBUG Processing 546/712 atomic regions from SNP 163636 to 164236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,942 DEBUG Processing 193/709 atomic regions from SNP 57681 to 58281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,062 DEBUG Processing 71/640 atomic regions from SNP 21041 to 21641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,095 DEBUG Processing 158/667 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,131 DEBUG Processing 547/712 atomic regions from SNP 163936 to 164536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,147 DEBUG Processing 194/709 atomic regions from SNP 57981 to 58581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,273 DEBUG Processing 72/640 atomic regions from SNP 21341 to 21941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,308 DEBUG Processing 159/667 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,354 DEBUG Processing 195/709 atomic regions from SNP 58281 to 58881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,359 DEBUG Processing 548/712 atomic regions from SNP 164236 to 164836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,480 DEBUG Processing 73/640 atomic regions from SNP 21641 to 22241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,520 DEBUG Processing 160/667 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,558 DEBUG Processing 196/709 atomic regions from SNP 58581 to 59181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,588 DEBUG Processing 549/712 atomic regions from SNP 164536 to 165136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,682 DEBUG Processing 74/640 atomic regions from SNP 21941 to 22541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,728 DEBUG Processing 161/667 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,759 DEBUG Processing 197/709 atomic regions from SNP 58881 to 59481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,811 DEBUG Processing 550/712 atomic regions from SNP 164836 to 165436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,885 DEBUG Processing 75/640 atomic regions from SNP 22241 to 22841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,938 DEBUG Processing 162/667 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,966 DEBUG Processing 198/709 atomic regions from SNP 59181 to 59781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,038 DEBUG Processing 551/712 atomic regions from SNP 165136 to 165736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,099 DEBUG Processing 76/640 atomic regions from SNP 22541 to 23141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,155 DEBUG Processing 163/667 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,181 DEBUG Processing 199/709 atomic regions from SNP 59481 to 60081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,273 DEBUG Processing 552/712 atomic regions from SNP 165436 to 166036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,312 DEBUG Processing 77/640 atomic regions from SNP 22841 to 23441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,370 DEBUG Processing 164/667 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,392 DEBUG Processing 200/709 atomic regions from SNP 59781 to 60381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,497 DEBUG Processing 553/712 atomic regions from SNP 165736 to 166336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,514 DEBUG Processing 78/640 atomic regions from SNP 23141 to 23741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,579 DEBUG Processing 165/667 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,604 DEBUG Processing 201/709 atomic regions from SNP 60081 to 60681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,714 DEBUG Processing 79/640 atomic regions from SNP 23441 to 24041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,716 DEBUG Processing 554/712 atomic regions from SNP 166036 to 166636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,787 DEBUG Processing 166/667 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,820 DEBUG Processing 202/709 atomic regions from SNP 60381 to 60981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,923 DEBUG Processing 80/640 atomic regions from SNP 23741 to 24341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,943 DEBUG Processing 555/712 atomic regions from SNP 166336 to 166936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,999 DEBUG Processing 167/667 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,037 DEBUG Processing 203/709 atomic regions from SNP 60681 to 61281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,128 DEBUG Processing 81/640 atomic regions from SNP 24041 to 24641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,167 DEBUG Processing 556/712 atomic regions from SNP 166636 to 167236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,209 DEBUG Processing 168/667 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,252 DEBUG Processing 204/709 atomic regions from SNP 60981 to 61581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,338 DEBUG Processing 82/640 atomic regions from SNP 24341 to 24941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,398 DEBUG Processing 557/712 atomic regions from SNP 166936 to 167536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,420 DEBUG Processing 169/667 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,458 DEBUG Processing 205/709 atomic regions from SNP 61281 to 61881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,564 DEBUG Processing 83/640 atomic regions from SNP 24641 to 25241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,628 DEBUG Processing 558/712 atomic regions from SNP 167236 to 167836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,643 DEBUG Processing 170/667 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,668 DEBUG Processing 206/709 atomic regions from SNP 61581 to 62181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,789 DEBUG Processing 84/640 atomic regions from SNP 24941 to 25541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,856 DEBUG Processing 559/712 atomic regions from SNP 167536 to 168136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,871 DEBUG Processing 171/667 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,873 DEBUG Processing 207/709 atomic regions from SNP 61881 to 62481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,994 DEBUG Processing 85/640 atomic regions from SNP 25241 to 25841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,081 DEBUG Processing 208/709 atomic regions from SNP 62181 to 62781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,087 DEBUG Processing 560/712 atomic regions from SNP 167836 to 168436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,097 DEBUG Processing 172/667 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,200 DEBUG Processing 86/640 atomic regions from SNP 25541 to 26141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,290 DEBUG Processing 209/709 atomic regions from SNP 62481 to 63081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,322 DEBUG Processing 561/712 atomic regions from SNP 168136 to 168736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,324 DEBUG Processing 173/667 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,401 DEBUG Processing 87/640 atomic regions from SNP 25841 to 26441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,501 DEBUG Processing 210/709 atomic regions from SNP 62781 to 63381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,532 DEBUG Processing 174/667 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,549 DEBUG Processing 562/712 atomic regions from SNP 168436 to 169036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,614 DEBUG Processing 88/640 atomic regions from SNP 26141 to 26741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,741 DEBUG Processing 211/709 atomic regions from SNP 63081 to 63681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,758 DEBUG Processing 175/667 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,784 DEBUG Processing 563/712 atomic regions from SNP 168736 to 169336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,825 DEBUG Processing 89/640 atomic regions from SNP 26441 to 27041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,947 DEBUG Processing 212/709 atomic regions from SNP 63381 to 63981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,980 DEBUG Processing 176/667 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,009 DEBUG Processing 564/712 atomic regions from SNP 169036 to 169636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,029 DEBUG Processing 90/640 atomic regions from SNP 26741 to 27341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,153 DEBUG Processing 213/709 atomic regions from SNP 63681 to 64281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,189 DEBUG Processing 177/667 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,235 DEBUG Processing 565/712 atomic regions from SNP 169336 to 169936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,237 DEBUG Processing 91/640 atomic regions from SNP 27041 to 27641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,358 DEBUG Processing 214/709 atomic regions from SNP 63981 to 64581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,395 DEBUG Processing 178/667 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,452 DEBUG Processing 92/640 atomic regions from SNP 27341 to 27941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,468 DEBUG Processing 566/712 atomic regions from SNP 169636 to 170236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,561 DEBUG Processing 215/709 atomic regions from SNP 64281 to 64881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,601 DEBUG Processing 179/667 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,658 DEBUG Processing 93/640 atomic regions from SNP 27641 to 28241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,691 DEBUG Processing 567/712 atomic regions from SNP 169936 to 170536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,769 DEBUG Processing 216/709 atomic regions from SNP 64581 to 65181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,811 DEBUG Processing 180/667 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,867 DEBUG Processing 94/640 atomic regions from SNP 27941 to 28541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,913 DEBUG Processing 568/712 atomic regions from SNP 170236 to 170836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,974 DEBUG Processing 217/709 atomic regions from SNP 64881 to 65481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,026 DEBUG Processing 181/667 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,070 DEBUG Processing 95/640 atomic regions from SNP 28241 to 28841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,135 DEBUG Processing 569/712 atomic regions from SNP 170536 to 171136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,179 DEBUG Processing 218/709 atomic regions from SNP 65181 to 65781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,237 DEBUG Processing 182/667 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,277 DEBUG Processing 96/640 atomic regions from SNP 28541 to 29141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,351 DEBUG Processing 570/712 atomic regions from SNP 170836 to 171436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,384 DEBUG Processing 219/709 atomic regions from SNP 65481 to 66081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,443 DEBUG Processing 183/667 atomic regions from SNP 54782 to 55383 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,483 DEBUG Processing 97/640 atomic regions from SNP 28841 to 29441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,573 DEBUG Processing 571/712 atomic regions from SNP 171136 to 171736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,596 DEBUG Processing 220/709 atomic regions from SNP 65781 to 66381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,651 DEBUG Processing 184/667 atomic regions from SNP 55083 to 55684 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,693 DEBUG Processing 98/640 atomic regions from SNP 29141 to 29741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,810 DEBUG Processing 221/709 atomic regions from SNP 66081 to 66681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,842 DEBUG Processing 572/712 atomic regions from SNP 171436 to 172036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,853 DEBUG Processing 185/667 atomic regions from SNP 55384 to 55985 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,907 DEBUG Processing 99/640 atomic regions from SNP 29441 to 30041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,023 DEBUG Processing 222/709 atomic regions from SNP 66381 to 66981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,063 DEBUG Processing 186/667 atomic regions from SNP 55685 to 56286 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,068 DEBUG Processing 573/712 atomic regions from SNP 171736 to 172336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,123 DEBUG Processing 100/640 atomic regions from SNP 29741 to 30341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,237 DEBUG Processing 223/709 atomic regions from SNP 66681 to 67281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,278 DEBUG Processing 187/667 atomic regions from SNP 55986 to 56587 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,299 DEBUG Processing 574/712 atomic regions from SNP 172036 to 172636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,319 DEBUG Processing 101/640 atomic regions from SNP 30041 to 30641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,448 DEBUG Processing 224/709 atomic regions from SNP 66981 to 67581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,498 DEBUG Processing 188/667 atomic regions from SNP 56287 to 56888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,528 DEBUG Processing 575/712 atomic regions from SNP 172336 to 172936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,536 DEBUG Processing 102/640 atomic regions from SNP 30341 to 30941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,651 DEBUG Processing 225/709 atomic regions from SNP 67281 to 67881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,714 DEBUG Processing 189/667 atomic regions from SNP 56588 to 57189 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,745 DEBUG Processing 103/640 atomic regions from SNP 30641 to 31241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,756 DEBUG Processing 576/712 atomic regions from SNP 172636 to 173236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,849 DEBUG Processing 226/709 atomic regions from SNP 67581 to 68181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,922 DEBUG Processing 190/667 atomic regions from SNP 56889 to 57490 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,955 DEBUG Processing 104/640 atomic regions from SNP 30941 to 31541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,983 DEBUG Processing 577/712 atomic regions from SNP 172936 to 173536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,051 DEBUG Processing 227/709 atomic regions from SNP 67881 to 68481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,129 DEBUG Processing 191/667 atomic regions from SNP 57190 to 57791 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,164 DEBUG Processing 105/640 atomic regions from SNP 31241 to 31841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,209 DEBUG Processing 578/712 atomic regions from SNP 173236 to 173836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,257 DEBUG Processing 228/709 atomic regions from SNP 68181 to 68781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,332 DEBUG Processing 192/667 atomic regions from SNP 57491 to 58092 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,368 DEBUG Processing 106/640 atomic regions from SNP 31541 to 32141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,434 DEBUG Processing 579/712 atomic regions from SNP 173536 to 174136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,463 DEBUG Processing 229/709 atomic regions from SNP 68481 to 69081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,536 DEBUG Processing 193/667 atomic regions from SNP 57792 to 58393 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,568 DEBUG Processing 107/640 atomic regions from SNP 31841 to 32441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,656 DEBUG Processing 580/712 atomic regions from SNP 173836 to 174436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,669 DEBUG Processing 230/709 atomic regions from SNP 68781 to 69381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,769 DEBUG Processing 108/640 atomic regions from SNP 32141 to 32741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,778 DEBUG Processing 194/667 atomic regions from SNP 58093 to 58694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,873 DEBUG Processing 581/712 atomic regions from SNP 174136 to 174736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,885 DEBUG Processing 231/709 atomic regions from SNP 69081 to 69681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,972 DEBUG Processing 109/640 atomic regions from SNP 32441 to 33041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,008 DEBUG Processing 195/667 atomic regions from SNP 58394 to 58995 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,088 DEBUG Processing 232/709 atomic regions from SNP 69381 to 69981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,091 DEBUG Processing 582/712 atomic regions from SNP 174436 to 175036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,173 DEBUG Processing 110/640 atomic regions from SNP 32741 to 33341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,217 DEBUG Processing 196/667 atomic regions from SNP 58695 to 59296 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,292 DEBUG Processing 233/709 atomic regions from SNP 69681 to 70281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,310 DEBUG Processing 583/712 atomic regions from SNP 174736 to 175336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,370 DEBUG Processing 111/640 atomic regions from SNP 33041 to 33641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,423 DEBUG Processing 197/667 atomic regions from SNP 58996 to 59597 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,499 DEBUG Processing 234/709 atomic regions from SNP 69981 to 70581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,530 DEBUG Processing 584/712 atomic regions from SNP 175036 to 175636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,566 DEBUG Processing 112/640 atomic regions from SNP 33341 to 33941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,630 DEBUG Processing 198/667 atomic regions from SNP 59297 to 59898 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,710 DEBUG Processing 235/709 atomic regions from SNP 70281 to 70881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,752 DEBUG Processing 585/712 atomic regions from SNP 175336 to 175936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,771 DEBUG Processing 113/640 atomic regions from SNP 33641 to 34241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,860 DEBUG Processing 199/667 atomic regions from SNP 59598 to 60199 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,920 DEBUG Processing 236/709 atomic regions from SNP 70581 to 71181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,971 DEBUG Processing 114/640 atomic regions from SNP 33941 to 34541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,991 DEBUG Processing 586/712 atomic regions from SNP 175636 to 176236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,064 DEBUG Processing 200/667 atomic regions from SNP 59899 to 60500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,126 DEBUG Processing 237/709 atomic regions from SNP 70881 to 71481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,174 DEBUG Processing 115/640 atomic regions from SNP 34241 to 34841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,209 DEBUG Processing 587/712 atomic regions from SNP 175936 to 176536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,265 DEBUG Processing 201/667 atomic regions from SNP 60200 to 60801 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,339 DEBUG Processing 238/709 atomic regions from SNP 71181 to 71781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,384 DEBUG Processing 116/640 atomic regions from SNP 34541 to 35141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,435 DEBUG Processing 588/712 atomic regions from SNP 176236 to 176836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,466 DEBUG Processing 202/667 atomic regions from SNP 60501 to 61102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,547 DEBUG Processing 239/709 atomic regions from SNP 71481 to 72081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,596 DEBUG Processing 117/640 atomic regions from SNP 34841 to 35441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,662 DEBUG Processing 589/712 atomic regions from SNP 176536 to 177136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,676 DEBUG Processing 203/667 atomic regions from SNP 60802 to 61403 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,757 DEBUG Processing 240/709 atomic regions from SNP 71781 to 72381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,817 DEBUG Processing 118/640 atomic regions from SNP 35141 to 35741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,886 DEBUG Processing 204/667 atomic regions from SNP 61103 to 61704 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,894 DEBUG Processing 590/712 atomic regions from SNP 176836 to 177436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,961 DEBUG Processing 241/709 atomic regions from SNP 72081 to 72681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,026 DEBUG Processing 119/640 atomic regions from SNP 35441 to 36041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,099 DEBUG Processing 205/667 atomic regions from SNP 61404 to 62005 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,121 DEBUG Processing 591/712 atomic regions from SNP 177136 to 177736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,164 DEBUG Processing 242/709 atomic regions from SNP 72381 to 72981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,233 DEBUG Processing 120/640 atomic regions from SNP 35741 to 36341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,318 DEBUG Processing 206/667 atomic regions from SNP 61705 to 62306 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,353 DEBUG Processing 592/712 atomic regions from SNP 177436 to 178036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,377 DEBUG Processing 243/709 atomic regions from SNP 72681 to 73281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,440 DEBUG Processing 121/640 atomic regions from SNP 36041 to 36641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,536 DEBUG Processing 207/667 atomic regions from SNP 62006 to 62607 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,581 DEBUG Processing 593/712 atomic regions from SNP 177736 to 178336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,590 DEBUG Processing 244/709 atomic regions from SNP 72981 to 73581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,640 DEBUG Processing 122/640 atomic regions from SNP 36341 to 36941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,744 DEBUG Processing 208/667 atomic regions from SNP 62307 to 62908 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,801 DEBUG Processing 594/712 atomic regions from SNP 178036 to 178636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,802 DEBUG Processing 245/709 atomic regions from SNP 73281 to 73881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,837 DEBUG Processing 123/640 atomic regions from SNP 36641 to 37241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,949 DEBUG Processing 209/667 atomic regions from SNP 62608 to 63209 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,012 DEBUG Processing 246/709 atomic regions from SNP 73581 to 74181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,023 DEBUG Processing 595/712 atomic regions from SNP 178336 to 178936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,051 DEBUG Processing 124/640 atomic regions from SNP 36941 to 37541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,160 DEBUG Processing 210/667 atomic regions from SNP 62909 to 63510 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,225 DEBUG Processing 247/709 atomic regions from SNP 73881 to 74481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,251 DEBUG Processing 596/712 atomic regions from SNP 178636 to 179236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,258 DEBUG Processing 125/640 atomic regions from SNP 37241 to 37841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,373 DEBUG Processing 211/667 atomic regions from SNP 63210 to 63811 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,435 DEBUG Processing 248/709 atomic regions from SNP 74181 to 74781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,470 DEBUG Processing 126/640 atomic regions from SNP 37541 to 38141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,481 DEBUG Processing 597/712 atomic regions from SNP 178936 to 179536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,586 DEBUG Processing 212/667 atomic regions from SNP 63511 to 64112 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,643 DEBUG Processing 249/709 atomic regions from SNP 74481 to 75081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,683 DEBUG Processing 127/640 atomic regions from SNP 37841 to 38441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,711 DEBUG Processing 598/712 atomic regions from SNP 179236 to 179836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,815 DEBUG Processing 213/667 atomic regions from SNP 63812 to 64413 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,854 DEBUG Processing 250/709 atomic regions from SNP 74781 to 75381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,893 DEBUG Processing 128/640 atomic regions from SNP 38141 to 38741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,939 DEBUG Processing 599/712 atomic regions from SNP 179536 to 180136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,022 DEBUG Processing 214/667 atomic regions from SNP 64113 to 64714 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,055 DEBUG Processing 251/709 atomic regions from SNP 75081 to 75681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,095 DEBUG Processing 129/640 atomic regions from SNP 38441 to 39041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,166 DEBUG Processing 600/712 atomic regions from SNP 179836 to 180436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,234 DEBUG Processing 215/667 atomic regions from SNP 64414 to 65015 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,260 DEBUG Processing 252/709 atomic regions from SNP 75381 to 75981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,300 DEBUG Processing 130/640 atomic regions from SNP 38741 to 39341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,389 DEBUG Processing 601/712 atomic regions from SNP 180136 to 180736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,448 DEBUG Processing 216/667 atomic regions from SNP 64715 to 65316 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,466 DEBUG Processing 253/709 atomic regions from SNP 75681 to 76281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,500 DEBUG Processing 131/640 atomic regions from SNP 39041 to 39641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,602 DEBUG Processing 602/712 atomic regions from SNP 180436 to 181036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,657 DEBUG Processing 217/667 atomic regions from SNP 65016 to 65617 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,675 DEBUG Processing 254/709 atomic regions from SNP 75981 to 76581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,705 DEBUG Processing 132/640 atomic regions from SNP 39341 to 39941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,815 DEBUG Processing 603/712 atomic regions from SNP 180736 to 181336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,868 DEBUG Processing 218/667 atomic regions from SNP 65317 to 65918 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,897 DEBUG Processing 255/709 atomic regions from SNP 76281 to 76881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,925 DEBUG Processing 133/640 atomic regions from SNP 39641 to 40241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,048 DEBUG Processing 604/712 atomic regions from SNP 181036 to 181636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,075 DEBUG Processing 219/667 atomic regions from SNP 65618 to 66219 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,112 DEBUG Processing 256/709 atomic regions from SNP 76581 to 77181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,136 DEBUG Processing 134/640 atomic regions from SNP 39941 to 40541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,279 DEBUG Processing 220/667 atomic regions from SNP 65919 to 66520 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,291 DEBUG Processing 605/712 atomic regions from SNP 181336 to 181936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,325 DEBUG Processing 257/709 atomic regions from SNP 76881 to 77481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,344 DEBUG Processing 135/640 atomic regions from SNP 40241 to 40841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,484 DEBUG Processing 221/667 atomic regions from SNP 66220 to 66821 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,536 DEBUG Processing 606/712 atomic regions from SNP 181636 to 182236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,539 DEBUG Processing 258/709 atomic regions from SNP 77181 to 77781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,553 DEBUG Processing 136/640 atomic regions from SNP 40541 to 41141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,685 DEBUG Processing 222/667 atomic regions from SNP 66521 to 67122 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,747 DEBUG Processing 259/709 atomic regions from SNP 77481 to 78081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,759 DEBUG Processing 607/712 atomic regions from SNP 181936 to 182536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,761 DEBUG Processing 137/640 atomic regions from SNP 40841 to 41441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,890 DEBUG Processing 223/667 atomic regions from SNP 66822 to 67423 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,965 DEBUG Processing 138/640 atomic regions from SNP 41141 to 41741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,987 DEBUG Processing 260/709 atomic regions from SNP 77781 to 78381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,998 DEBUG Processing 608/712 atomic regions from SNP 182236 to 182836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,095 DEBUG Processing 224/667 atomic regions from SNP 67123 to 67724 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,167 DEBUG Processing 139/640 atomic regions from SNP 41441 to 42041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,209 DEBUG Processing 261/709 atomic regions from SNP 78081 to 78681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,222 DEBUG Processing 609/712 atomic regions from SNP 182536 to 183136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,302 DEBUG Processing 225/667 atomic regions from SNP 67424 to 68025 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,374 DEBUG Processing 140/640 atomic regions from SNP 41741 to 42341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,417 DEBUG Processing 262/709 atomic regions from SNP 78381 to 78981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,444 DEBUG Processing 610/712 atomic regions from SNP 182836 to 183436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,510 DEBUG Processing 226/667 atomic regions from SNP 67725 to 68326 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,578 DEBUG Processing 141/640 atomic regions from SNP 42041 to 42641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,628 DEBUG Processing 263/709 atomic regions from SNP 78681 to 79281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,678 DEBUG Processing 611/712 atomic regions from SNP 183136 to 183736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,731 DEBUG Processing 227/667 atomic regions from SNP 68026 to 68627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,784 DEBUG Processing 142/640 atomic regions from SNP 42341 to 42941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,843 DEBUG Processing 264/709 atomic regions from SNP 78981 to 79581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,929 DEBUG Processing 612/712 atomic regions from SNP 183436 to 184036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,946 DEBUG Processing 228/667 atomic regions from SNP 68327 to 68928 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,993 DEBUG Processing 143/640 atomic regions from SNP 42641 to 43241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,056 DEBUG Processing 265/709 atomic regions from SNP 79281 to 79881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,178 DEBUG Processing 229/667 atomic regions from SNP 68628 to 69229 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,182 DEBUG Processing 613/712 atomic regions from SNP 183736 to 184336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,226 DEBUG Processing 144/640 atomic regions from SNP 42941 to 43541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,268 DEBUG Processing 266/709 atomic regions from SNP 79581 to 80181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,389 DEBUG Processing 230/667 atomic regions from SNP 68929 to 69530 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,419 DEBUG Processing 614/712 atomic regions from SNP 184036 to 184636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,455 DEBUG Processing 145/640 atomic regions from SNP 43241 to 43841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,486 DEBUG Processing 267/709 atomic regions from SNP 79881 to 80481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,596 DEBUG Processing 231/667 atomic regions from SNP 69230 to 69831 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,662 DEBUG Processing 146/640 atomic regions from SNP 43541 to 44141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,677 DEBUG Processing 615/712 atomic regions from SNP 184336 to 184936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,721 DEBUG Processing 268/709 atomic regions from SNP 80181 to 80781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,810 DEBUG Processing 232/667 atomic regions from SNP 69531 to 70132 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,874 DEBUG Processing 147/640 atomic regions from SNP 43841 to 44441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,927 DEBUG Processing 616/712 atomic regions from SNP 184636 to 185236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,938 DEBUG Processing 269/709 atomic regions from SNP 80481 to 81081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,017 DEBUG Processing 233/667 atomic regions from SNP 69832 to 70433 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,083 DEBUG Processing 148/640 atomic regions from SNP 44141 to 44741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,149 DEBUG Processing 270/709 atomic regions from SNP 80781 to 81381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,171 DEBUG Processing 617/712 atomic regions from SNP 184936 to 185536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,206 DEBUG Segmenting atomic regions: 2025-01-31 09:50:29,225 DEBUG Processing 234/667 atomic regions from SNP 70133 to 70734 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,279 DEBUG Processing 1/545 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,284 DEBUG Processing 149/640 atomic regions from SNP 44441 to 45041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,358 DEBUG Processing 271/709 atomic regions from SNP 81081 to 81681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,423 DEBUG Processing 618/712 atomic regions from SNP 185236 to 185836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,442 DEBUG Processing 235/667 atomic regions from SNP 70434 to 71035 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,470 DEBUG Processing 2/545 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,503 DEBUG Processing 150/640 atomic regions from SNP 44741 to 45341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,569 DEBUG Processing 272/709 atomic regions from SNP 81381 to 81981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,661 DEBUG Processing 3/545 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,676 DEBUG Processing 236/667 atomic regions from SNP 70735 to 71336 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,680 DEBUG Processing 619/712 atomic regions from SNP 185536 to 186136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,715 DEBUG Processing 151/640 atomic regions from SNP 45041 to 45641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,783 DEBUG Processing 273/709 atomic regions from SNP 81681 to 82281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,852 DEBUG Processing 4/545 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,905 DEBUG Processing 237/667 atomic regions from SNP 71036 to 71637 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,925 DEBUG Processing 620/712 atomic regions from SNP 185836 to 186436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,941 DEBUG Processing 152/640 atomic regions from SNP 45341 to 45941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,001 DEBUG Processing 274/709 atomic regions from SNP 81981 to 82581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,049 DEBUG Processing 5/545 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,117 DEBUG Processing 238/667 atomic regions from SNP 71337 to 71938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,154 DEBUG Processing 153/640 atomic regions from SNP 45641 to 46241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,180 DEBUG Processing 621/712 atomic regions from SNP 186136 to 186736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,218 DEBUG Processing 275/709 atomic regions from SNP 82281 to 82881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,241 DEBUG Processing 6/545 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,331 DEBUG Processing 239/667 atomic regions from SNP 71638 to 72239 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,365 DEBUG Processing 154/640 atomic regions from SNP 45941 to 46541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,417 DEBUG Processing 622/712 atomic regions from SNP 186436 to 187036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,443 DEBUG Processing 7/545 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,464 DEBUG Processing 276/709 atomic regions from SNP 82581 to 83181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,544 DEBUG Processing 240/667 atomic regions from SNP 71939 to 72540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,573 DEBUG Processing 155/640 atomic regions from SNP 46241 to 46841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,645 DEBUG Processing 623/712 atomic regions from SNP 186736 to 187336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,662 DEBUG Processing 8/545 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,704 DEBUG Processing 277/709 atomic regions from SNP 82881 to 83481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,756 DEBUG Processing 241/667 atomic regions from SNP 72240 to 72841 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,792 DEBUG Processing 156/640 atomic regions from SNP 46541 to 47141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,873 DEBUG Processing 624/712 atomic regions from SNP 187036 to 187636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,884 DEBUG Processing 9/545 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,940 DEBUG Processing 278/709 atomic regions from SNP 83181 to 83781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,965 DEBUG Processing 242/667 atomic regions from SNP 72541 to 73142 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,996 DEBUG Processing 157/640 atomic regions from SNP 46841 to 47441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,101 DEBUG Processing 625/712 atomic regions from SNP 187336 to 187936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,101 DEBUG Processing 10/545 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,152 DEBUG Processing 279/709 atomic regions from SNP 83481 to 84081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,182 DEBUG Processing 243/667 atomic regions from SNP 72842 to 73443 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,199 DEBUG Processing 158/640 atomic regions from SNP 47141 to 47741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,305 DEBUG Processing 11/545 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,330 DEBUG Processing 626/712 atomic regions from SNP 187636 to 188236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,367 DEBUG Processing 280/709 atomic regions from SNP 83781 to 84381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,409 DEBUG Processing 159/640 atomic regions from SNP 47441 to 48041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,419 DEBUG Processing 244/667 atomic regions from SNP 73143 to 73744 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,515 DEBUG Segmenting atomic regions: 2025-01-31 09:50:31,516 DEBUG Processing 12/545 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,556 DEBUG Processing 627/712 atomic regions from SNP 187936 to 188536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,586 DEBUG Processing 281/709 atomic regions from SNP 84081 to 84681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,591 DEBUG Processing 1/585 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:31,621 DEBUG Processing 160/640 atomic regions from SNP 47741 to 48341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,637 DEBUG Processing 245/667 atomic regions from SNP 73444 to 74045 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,700 DEBUG Processing 13/545 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,793 DEBUG Processing 2/585 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:31,799 DEBUG Processing 628/712 atomic regions from SNP 188236 to 188836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,803 DEBUG Processing 282/709 atomic regions from SNP 84381 to 84981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,837 DEBUG Processing 161/640 atomic regions from SNP 48041 to 48641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,858 DEBUG Processing 246/667 atomic regions from SNP 73745 to 74346 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,893 DEBUG Processing 14/545 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,984 DEBUG Processing 3/585 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,017 DEBUG Processing 283/709 atomic regions from SNP 84681 to 85281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,048 DEBUG Processing 629/712 atomic regions from SNP 188536 to 189136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,051 DEBUG Processing 162/640 atomic regions from SNP 48341 to 48941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,078 DEBUG Processing 247/667 atomic regions from SNP 74046 to 74647 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,088 DEBUG Processing 15/545 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,178 DEBUG Processing 4/585 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,234 DEBUG Processing 284/709 atomic regions from SNP 84981 to 85581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,265 DEBUG Processing 163/640 atomic regions from SNP 48641 to 49241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,282 DEBUG Processing 16/545 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,296 DEBUG Processing 630/712 atomic regions from SNP 188836 to 189436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,298 DEBUG Processing 248/667 atomic regions from SNP 74347 to 74948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,385 DEBUG Processing 5/585 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,462 DEBUG Processing 285/709 atomic regions from SNP 85281 to 85881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,507 DEBUG Processing 164/640 atomic regions from SNP 48941 to 49541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,511 DEBUG Processing 17/545 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,556 DEBUG Processing 249/667 atomic regions from SNP 74648 to 75249 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,597 DEBUG Processing 631/712 atomic regions from SNP 189136 to 189736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,675 DEBUG Processing 6/585 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,770 DEBUG Processing 286/709 atomic regions from SNP 85581 to 86181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,779 DEBUG Processing 18/545 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,802 DEBUG Processing 165/640 atomic regions from SNP 49241 to 49841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,828 DEBUG Processing 250/667 atomic regions from SNP 74949 to 75550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,871 DEBUG Processing 632/712 atomic regions from SNP 189436 to 190036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,875 DEBUG Processing 7/585 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,003 DEBUG Processing 19/545 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,013 DEBUG Processing 287/709 atomic regions from SNP 85881 to 86481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,071 DEBUG Processing 166/640 atomic regions from SNP 49541 to 50141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,099 DEBUG Processing 8/585 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,130 DEBUG Processing 633/712 atomic regions from SNP 189736 to 190336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,131 DEBUG Processing 251/667 atomic regions from SNP 75250 to 75850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,235 DEBUG Processing 20/545 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,266 DEBUG Processing 288/709 atomic regions from SNP 86181 to 86781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,331 DEBUG Processing 167/640 atomic regions from SNP 49841 to 50441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,353 DEBUG Processing 9/585 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,397 DEBUG Processing 634/712 atomic regions from SNP 190036 to 190636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,404 DEBUG Processing 252/667 atomic regions from SNP 75550 to 76150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,427 DEBUG Processing 21/545 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,482 DEBUG Processing 289/709 atomic regions from SNP 86481 to 87081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,542 DEBUG Processing 168/640 atomic regions from SNP 50141 to 50741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,557 DEBUG Processing 10/585 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,618 DEBUG Processing 253/667 atomic regions from SNP 75850 to 76450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,620 DEBUG Processing 22/545 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,628 DEBUG Processing 635/712 atomic regions from SNP 190336 to 190936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,696 DEBUG Processing 290/709 atomic regions from SNP 86781 to 87381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,757 DEBUG Processing 169/640 atomic regions from SNP 50441 to 51041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,760 DEBUG Processing 11/585 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,813 DEBUG Processing 23/545 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,836 DEBUG Processing 254/667 atomic regions from SNP 76150 to 76750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,861 DEBUG Processing 636/712 atomic regions from SNP 190636 to 191236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,914 DEBUG Processing 291/709 atomic regions from SNP 87081 to 87681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,969 DEBUG Processing 170/640 atomic regions from SNP 50741 to 51341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,978 DEBUG Processing 12/585 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,998 DEBUG Processing 24/545 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,045 DEBUG Processing 255/667 atomic regions from SNP 76450 to 77050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,087 DEBUG Processing 637/712 atomic regions from SNP 190936 to 191536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,125 DEBUG Processing 292/709 atomic regions from SNP 87381 to 87981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,182 DEBUG Processing 171/640 atomic regions from SNP 51041 to 51641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,189 DEBUG Processing 25/545 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,206 DEBUG Processing 13/585 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,252 DEBUG Processing 256/667 atomic regions from SNP 76750 to 77350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,308 DEBUG Processing 638/712 atomic regions from SNP 191236 to 191836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,334 DEBUG Processing 293/709 atomic regions from SNP 87681 to 88281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,388 DEBUG Processing 26/545 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,400 DEBUG Processing 172/640 atomic regions from SNP 51341 to 51941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,418 DEBUG Processing 14/585 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,464 DEBUG Processing 257/667 atomic regions from SNP 77050 to 77650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,530 DEBUG Processing 639/712 atomic regions from SNP 191536 to 192136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,546 DEBUG Processing 294/709 atomic regions from SNP 87981 to 88581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,586 DEBUG Processing 27/545 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,622 DEBUG Processing 173/640 atomic regions from SNP 51641 to 52241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,633 DEBUG Processing 15/585 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,686 DEBUG Processing 258/667 atomic regions from SNP 77350 to 77950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,754 DEBUG Processing 640/712 atomic regions from SNP 191836 to 192436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,760 DEBUG Processing 295/709 atomic regions from SNP 88281 to 88881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,777 DEBUG Processing 28/545 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,835 DEBUG Processing 174/640 atomic regions from SNP 51941 to 52541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,838 DEBUG Processing 16/585 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,914 DEBUG Processing 259/667 atomic regions from SNP 77650 to 78250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,975 DEBUG Processing 29/545 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,984 DEBUG Processing 296/709 atomic regions from SNP 88581 to 89181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,988 DEBUG Processing 641/712 atomic regions from SNP 192136 to 192736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,035 DEBUG Processing 17/585 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,046 DEBUG Processing 175/640 atomic regions from SNP 52241 to 52841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,128 DEBUG Processing 260/667 atomic regions from SNP 77950 to 78550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,173 DEBUG Processing 30/545 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,220 DEBUG Processing 297/709 atomic regions from SNP 88881 to 89481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,221 DEBUG Processing 642/712 atomic regions from SNP 192436 to 193036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,236 DEBUG Processing 18/585 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,250 DEBUG Processing 176/640 atomic regions from SNP 52541 to 53141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,344 DEBUG Processing 261/667 atomic regions from SNP 78250 to 78850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,372 DEBUG Processing 31/545 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,444 DEBUG Processing 19/585 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,446 DEBUG Processing 298/709 atomic regions from SNP 89181 to 89781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,450 DEBUG Processing 643/712 atomic regions from SNP 192736 to 193336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,458 DEBUG Processing 177/640 atomic regions from SNP 52841 to 53441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,565 DEBUG Processing 262/667 atomic regions from SNP 78550 to 79150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,586 DEBUG Processing 32/545 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,656 DEBUG Processing 20/585 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,673 DEBUG Processing 299/709 atomic regions from SNP 89481 to 90081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,674 DEBUG Processing 178/640 atomic regions from SNP 53141 to 53741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,685 DEBUG Processing 644/712 atomic regions from SNP 193036 to 193636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,786 DEBUG Processing 263/667 atomic regions from SNP 78850 to 79450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,790 DEBUG Processing 33/545 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,876 DEBUG Processing 21/585 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,886 DEBUG Processing 179/640 atomic regions from SNP 53441 to 54041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,890 DEBUG Processing 300/709 atomic regions from SNP 89781 to 90381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,916 DEBUG Processing 645/712 atomic regions from SNP 193336 to 193936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,969 DEBUG Processing 34/545 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,998 DEBUG Processing 264/667 atomic regions from SNP 79150 to 79750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,098 DEBUG Processing 180/640 atomic regions from SNP 53741 to 54341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,104 DEBUG Processing 22/585 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,108 DEBUG Processing 301/709 atomic regions from SNP 90081 to 90681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,157 DEBUG Processing 35/545 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,159 DEBUG Processing 646/712 atomic regions from SNP 193636 to 194236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,222 DEBUG Processing 265/667 atomic regions from SNP 79450 to 80050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,301 DEBUG Processing 181/640 atomic regions from SNP 54041 to 54641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,315 DEBUG Processing 23/585 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,318 DEBUG Processing 302/709 atomic regions from SNP 90381 to 90981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,350 DEBUG Processing 36/545 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,391 DEBUG Processing 647/712 atomic regions from SNP 193936 to 194536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,453 DEBUG Processing 266/667 atomic regions from SNP 79750 to 80350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,497 DEBUG Processing 182/640 atomic regions from SNP 54341 to 54941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,521 DEBUG Processing 24/585 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,528 DEBUG Processing 303/709 atomic regions from SNP 90681 to 91281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,538 DEBUG Processing 37/545 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,618 DEBUG Processing 648/712 atomic regions from SNP 194236 to 194836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,666 DEBUG Processing 267/667 atomic regions from SNP 80050 to 80650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,700 DEBUG Processing 183/640 atomic regions from SNP 54641 to 55241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,722 DEBUG Processing 38/545 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,728 DEBUG Processing 25/585 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,738 DEBUG Processing 304/709 atomic regions from SNP 90981 to 91581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,844 DEBUG Processing 649/712 atomic regions from SNP 194536 to 195136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,878 DEBUG Processing 268/667 atomic regions from SNP 80350 to 80950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,910 DEBUG Processing 39/545 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,911 DEBUG Processing 184/640 atomic regions from SNP 54941 to 55541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,929 DEBUG Processing 26/585 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,948 DEBUG Processing 305/709 atomic regions from SNP 91281 to 91881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,067 DEBUG Processing 650/712 atomic regions from SNP 194836 to 195436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,089 DEBUG Processing 269/667 atomic regions from SNP 80650 to 81250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,110 DEBUG Processing 40/545 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,124 DEBUG Processing 185/640 atomic regions from SNP 55241 to 55841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,134 DEBUG Processing 27/585 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,158 DEBUG Processing 306/709 atomic regions from SNP 91581 to 92181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,300 DEBUG Processing 651/712 atomic regions from SNP 195136 to 195736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,302 DEBUG Processing 41/545 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,303 DEBUG Processing 270/667 atomic regions from SNP 80950 to 81550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,338 DEBUG Processing 186/640 atomic regions from SNP 55541 to 56141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,343 DEBUG Processing 28/585 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,365 DEBUG Processing 307/709 atomic regions from SNP 91881 to 92481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,489 DEBUG Processing 42/545 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,511 DEBUG Processing 271/667 atomic regions from SNP 81250 to 81850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,529 DEBUG Processing 652/712 atomic regions from SNP 195436 to 196036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,548 DEBUG Processing 187/640 atomic regions from SNP 55841 to 56441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,555 DEBUG Processing 29/585 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,575 DEBUG Processing 308/709 atomic regions from SNP 92181 to 92781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,675 DEBUG Processing 43/545 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,722 DEBUG Processing 272/667 atomic regions from SNP 81550 to 82150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,751 DEBUG Processing 188/640 atomic regions from SNP 56141 to 56741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,759 DEBUG Processing 653/712 atomic regions from SNP 195736 to 196336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,777 DEBUG Processing 30/585 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,778 DEBUG Processing 309/709 atomic regions from SNP 92481 to 93081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,882 DEBUG Processing 44/545 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,937 DEBUG Processing 273/667 atomic regions from SNP 81850 to 82450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,960 DEBUG Processing 189/640 atomic regions from SNP 56441 to 57041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,982 DEBUG Processing 310/709 atomic regions from SNP 92781 to 93381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,988 DEBUG Processing 654/712 atomic regions from SNP 196036 to 196636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,001 DEBUG Processing 31/585 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,084 DEBUG Processing 45/545 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,163 DEBUG Processing 274/667 atomic regions from SNP 82150 to 82750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,199 DEBUG Processing 311/709 atomic regions from SNP 93081 to 93681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,208 DEBUG Processing 190/640 atomic regions from SNP 56741 to 57341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,222 DEBUG Processing 655/712 atomic regions from SNP 196336 to 196936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,222 DEBUG Processing 32/585 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,288 DEBUG Processing 46/545 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,382 DEBUG Processing 275/667 atomic regions from SNP 82450 to 83050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,409 DEBUG Processing 312/709 atomic regions from SNP 93381 to 93981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,429 DEBUG Processing 191/640 atomic regions from SNP 57041 to 57641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,445 DEBUG Processing 656/712 atomic regions from SNP 196636 to 197236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,449 DEBUG Processing 33/585 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,480 DEBUG Processing 47/545 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,598 DEBUG Processing 276/667 atomic regions from SNP 82750 to 83350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,623 DEBUG Processing 313/709 atomic regions from SNP 93681 to 94281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,640 DEBUG Processing 192/640 atomic regions from SNP 57341 to 57941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,673 DEBUG Processing 657/712 atomic regions from SNP 196936 to 197536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,675 DEBUG Processing 34/585 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,678 DEBUG Processing 48/545 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,843 DEBUG Processing 277/667 atomic regions from SNP 83050 to 83650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,846 DEBUG Processing 314/709 atomic regions from SNP 93981 to 94581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,856 DEBUG Processing 193/640 atomic regions from SNP 57641 to 58241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,867 DEBUG Processing 49/545 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,889 DEBUG Processing 35/585 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,905 DEBUG Processing 658/712 atomic regions from SNP 197236 to 197836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,056 DEBUG Processing 50/545 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,063 DEBUG Processing 315/709 atomic regions from SNP 94281 to 94881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,068 DEBUG Processing 194/640 atomic regions from SNP 57941 to 58541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,072 DEBUG Processing 278/667 atomic regions from SNP 83350 to 83950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,122 DEBUG Processing 36/585 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,130 DEBUG Processing 659/712 atomic regions from SNP 197536 to 198136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,254 DEBUG Processing 51/545 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,281 DEBUG Processing 195/640 atomic regions from SNP 58241 to 58841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,291 DEBUG Processing 316/709 atomic regions from SNP 94581 to 95181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,296 DEBUG Processing 279/667 atomic regions from SNP 83650 to 84250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,326 DEBUG Processing 37/585 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,356 DEBUG Processing 660/712 atomic regions from SNP 197836 to 198436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,451 DEBUG Processing 52/545 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,492 DEBUG Processing 196/640 atomic regions from SNP 58541 to 59141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,512 DEBUG Processing 280/667 atomic regions from SNP 83950 to 84550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,521 DEBUG Processing 317/709 atomic regions from SNP 94881 to 95481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,544 DEBUG Processing 38/585 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,583 DEBUG Processing 661/712 atomic regions from SNP 198136 to 198736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,642 DEBUG Processing 53/545 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,701 DEBUG Processing 197/640 atomic regions from SNP 58841 to 59441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,725 DEBUG Processing 281/667 atomic regions from SNP 84250 to 84850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,757 DEBUG Processing 39/585 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,758 DEBUG Processing 318/709 atomic regions from SNP 95181 to 95781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,812 DEBUG Processing 662/712 atomic regions from SNP 198436 to 199036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,827 DEBUG Processing 54/545 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,910 DEBUG Processing 198/640 atomic regions from SNP 59141 to 59741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,941 DEBUG Processing 282/667 atomic regions from SNP 84550 to 85150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,960 DEBUG Processing 40/585 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,969 DEBUG Processing 319/709 atomic regions from SNP 95481 to 96081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,009 DEBUG Processing 55/545 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,036 DEBUG Processing 663/712 atomic regions from SNP 198736 to 199336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,124 DEBUG Processing 199/640 atomic regions from SNP 59441 to 60041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,156 DEBUG Processing 283/667 atomic regions from SNP 84850 to 85450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,168 DEBUG Processing 41/585 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,190 DEBUG Processing 320/709 atomic regions from SNP 95781 to 96381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,197 DEBUG Processing 56/545 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,253 DEBUG Processing 664/712 atomic regions from SNP 199036 to 199636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,330 DEBUG Processing 200/640 atomic regions from SNP 59741 to 60341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,366 DEBUG Processing 284/667 atomic regions from SNP 85150 to 85750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,370 DEBUG Processing 42/585 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,387 DEBUG Processing 57/545 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,428 DEBUG Processing 321/709 atomic regions from SNP 96081 to 96681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,472 DEBUG Processing 665/712 atomic regions from SNP 199336 to 199936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,536 DEBUG Processing 201/640 atomic regions from SNP 60041 to 60641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,576 DEBUG Processing 285/667 atomic regions from SNP 85450 to 86050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,576 DEBUG Processing 43/585 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,583 DEBUG Processing 58/545 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,662 DEBUG Processing 322/709 atomic regions from SNP 96381 to 96981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,693 DEBUG Processing 666/712 atomic regions from SNP 199636 to 200236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,736 DEBUG Processing 202/640 atomic regions from SNP 60341 to 60941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,774 DEBUG Processing 59/545 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,777 DEBUG Processing 286/667 atomic regions from SNP 85750 to 86350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,801 DEBUG Processing 44/585 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,888 DEBUG Processing 323/709 atomic regions from SNP 96681 to 97281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,914 DEBUG Processing 667/712 atomic regions from SNP 199936 to 200536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,945 DEBUG Processing 203/640 atomic regions from SNP 60641 to 61241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,969 DEBUG Processing 60/545 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,986 DEBUG Processing 287/667 atomic regions from SNP 86050 to 86650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,019 DEBUG Processing 45/585 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,098 DEBUG Processing 324/709 atomic regions from SNP 96981 to 97581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,140 DEBUG Processing 668/712 atomic regions from SNP 200236 to 200836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,155 DEBUG Processing 204/640 atomic regions from SNP 60941 to 61541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,176 DEBUG Processing 61/545 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,203 DEBUG Processing 288/667 atomic regions from SNP 86350 to 86950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,227 DEBUG Processing 46/585 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,305 DEBUG Processing 325/709 atomic regions from SNP 97281 to 97881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,365 DEBUG Processing 205/640 atomic regions from SNP 61241 to 61841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,367 DEBUG Processing 669/712 atomic regions from SNP 200536 to 201136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,371 DEBUG Processing 62/545 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,416 DEBUG Processing 289/667 atomic regions from SNP 86650 to 87250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,448 DEBUG Processing 47/585 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,516 DEBUG Processing 326/709 atomic regions from SNP 97581 to 98181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,572 DEBUG Processing 206/640 atomic regions from SNP 61541 to 62141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,575 DEBUG Processing 63/545 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,595 DEBUG Processing 670/712 atomic regions from SNP 200836 to 201436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,632 DEBUG Processing 290/667 atomic regions from SNP 86950 to 87550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,654 DEBUG Processing 48/585 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,730 DEBUG Processing 327/709 atomic regions from SNP 97881 to 98481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,768 DEBUG Processing 64/545 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,777 DEBUG Processing 207/640 atomic regions from SNP 61841 to 62441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,821 DEBUG Processing 671/712 atomic regions from SNP 201136 to 201736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,845 DEBUG Processing 291/667 atomic regions from SNP 87250 to 87850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,866 DEBUG Processing 49/585 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,952 DEBUG Processing 328/709 atomic regions from SNP 98181 to 98781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,962 DEBUG Processing 65/545 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,982 DEBUG Processing 208/640 atomic regions from SNP 62141 to 62741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,050 DEBUG Processing 672/712 atomic regions from SNP 201436 to 202036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,058 DEBUG Processing 292/667 atomic regions from SNP 87550 to 88150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,084 DEBUG Processing 50/585 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,168 DEBUG Processing 66/545 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,190 DEBUG Processing 209/640 atomic regions from SNP 62441 to 63041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,195 DEBUG Processing 329/709 atomic regions from SNP 98481 to 99081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,268 DEBUG Processing 293/667 atomic regions from SNP 87850 to 88450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,276 DEBUG Processing 673/712 atomic regions from SNP 201736 to 202336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,280 DEBUG Processing 51/585 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,369 DEBUG Processing 67/545 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,399 DEBUG Processing 210/640 atomic regions from SNP 62741 to 63341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,433 DEBUG Processing 330/709 atomic regions from SNP 98781 to 99381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,476 DEBUG Processing 294/667 atomic regions from SNP 88150 to 88750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,478 DEBUG Processing 52/585 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,498 DEBUG Processing 674/712 atomic regions from SNP 202036 to 202636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,562 DEBUG Processing 68/545 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,604 DEBUG Processing 211/640 atomic regions from SNP 63041 to 63641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,657 DEBUG Processing 331/709 atomic regions from SNP 99081 to 99681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,696 DEBUG Processing 53/585 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,704 DEBUG Processing 295/667 atomic regions from SNP 88450 to 89050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,717 DEBUG Processing 675/712 atomic regions from SNP 202336 to 202936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,750 DEBUG Processing 69/545 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,813 DEBUG Processing 212/640 atomic regions from SNP 63341 to 63941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,886 DEBUG Processing 332/709 atomic regions from SNP 99381 to 99981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,930 DEBUG Processing 54/585 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,938 DEBUG Processing 70/545 atomic regions from SNP 20769 to 21369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,939 DEBUG Processing 676/712 atomic regions from SNP 202636 to 203236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,949 DEBUG Processing 296/667 atomic regions from SNP 88750 to 89350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,017 DEBUG Processing 213/640 atomic regions from SNP 63641 to 64241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,109 DEBUG Processing 333/709 atomic regions from SNP 99681 to 100281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,132 DEBUG Processing 71/545 atomic regions from SNP 21069 to 21669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,165 DEBUG Processing 677/712 atomic regions from SNP 202936 to 203536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,168 DEBUG Processing 55/585 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,175 DEBUG Processing 297/667 atomic regions from SNP 89050 to 89650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,222 DEBUG Processing 214/640 atomic regions from SNP 63941 to 64541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,326 DEBUG Processing 334/709 atomic regions from SNP 99981 to 100581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,328 DEBUG Processing 72/545 atomic regions from SNP 21369 to 21969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,393 DEBUG Processing 298/667 atomic regions from SNP 89350 to 89950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,396 DEBUG Processing 678/712 atomic regions from SNP 203236 to 203836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,405 DEBUG Processing 56/585 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,428 DEBUG Processing 215/640 atomic regions from SNP 64241 to 64841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,519 DEBUG Processing 73/545 atomic regions from SNP 21669 to 22269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,565 DEBUG Processing 335/709 atomic regions from SNP 100281 to 100881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,626 DEBUG Processing 679/712 atomic regions from SNP 203536 to 204136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,631 DEBUG Processing 57/585 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,632 DEBUG Processing 299/667 atomic regions from SNP 89650 to 90250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,638 DEBUG Processing 216/640 atomic regions from SNP 64541 to 65141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,704 DEBUG Processing 74/545 atomic regions from SNP 21969 to 22569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,779 DEBUG Processing 336/709 atomic regions from SNP 100581 to 101181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,852 DEBUG Processing 217/640 atomic regions from SNP 64841 to 65441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,858 DEBUG Processing 680/712 atomic regions from SNP 203836 to 204436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,862 DEBUG Processing 58/585 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,884 DEBUG Processing 300/667 atomic regions from SNP 89950 to 90550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,894 DEBUG Processing 75/545 atomic regions from SNP 22269 to 22869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,990 DEBUG Processing 337/709 atomic regions from SNP 100881 to 101481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,058 DEBUG Processing 218/640 atomic regions from SNP 65141 to 65741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,086 DEBUG Processing 681/712 atomic regions from SNP 204136 to 204736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,087 DEBUG Processing 76/545 atomic regions from SNP 22569 to 23169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,096 DEBUG Processing 59/585 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,135 DEBUG Processing 301/667 atomic regions from SNP 90250 to 90850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,202 DEBUG Processing 338/709 atomic regions from SNP 101181 to 101781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,261 DEBUG Processing 219/640 atomic regions from SNP 65441 to 66041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,281 DEBUG Processing 77/545 atomic regions from SNP 22869 to 23469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,307 DEBUG Processing 60/585 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,312 DEBUG Processing 682/712 atomic regions from SNP 204436 to 205036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,378 DEBUG Processing 302/667 atomic regions from SNP 90550 to 91150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,431 DEBUG Processing 339/709 atomic regions from SNP 101481 to 102081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,468 DEBUG Processing 220/640 atomic regions from SNP 65741 to 66341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,479 DEBUG Processing 78/545 atomic regions from SNP 23169 to 23769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,509 DEBUG Processing 61/585 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,550 DEBUG Processing 683/712 atomic regions from SNP 204736 to 205336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,614 DEBUG Processing 303/667 atomic regions from SNP 90850 to 91450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,651 DEBUG Processing 340/709 atomic regions from SNP 101781 to 102381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,675 DEBUG Processing 79/545 atomic regions from SNP 23469 to 24069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,682 DEBUG Processing 221/640 atomic regions from SNP 66041 to 66641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,707 DEBUG Processing 62/585 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,787 DEBUG Processing 684/712 atomic regions from SNP 205036 to 205636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,826 DEBUG Processing 304/667 atomic regions from SNP 91150 to 91750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,867 DEBUG Processing 341/709 atomic regions from SNP 102081 to 102681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,869 DEBUG Processing 80/545 atomic regions from SNP 23769 to 24369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,897 DEBUG Processing 222/640 atomic regions from SNP 66341 to 66941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,905 DEBUG Processing 63/585 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,006 DEBUG Processing 685/712 atomic regions from SNP 205336 to 205936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,034 DEBUG Processing 305/667 atomic regions from SNP 91450 to 92050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,064 DEBUG Processing 81/545 atomic regions from SNP 24069 to 24669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,086 DEBUG Processing 342/709 atomic regions from SNP 102381 to 102981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,103 DEBUG Processing 64/585 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,107 DEBUG Processing 223/640 atomic regions from SNP 66641 to 67241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,228 DEBUG Processing 686/712 atomic regions from SNP 205636 to 206236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,242 DEBUG Processing 306/667 atomic regions from SNP 91750 to 92350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,265 DEBUG Processing 82/545 atomic regions from SNP 24369 to 24969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,308 DEBUG Processing 65/585 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,310 DEBUG Processing 343/709 atomic regions from SNP 102681 to 103281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,319 DEBUG Processing 224/640 atomic regions from SNP 66941 to 67541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,452 DEBUG Processing 307/667 atomic regions from SNP 92050 to 92650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,456 DEBUG Processing 687/712 atomic regions from SNP 205936 to 206536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,488 DEBUG Processing 83/545 atomic regions from SNP 24669 to 25269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,514 DEBUG Processing 66/585 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,527 DEBUG Processing 225/640 atomic regions from SNP 67241 to 67841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,542 DEBUG Processing 344/709 atomic regions from SNP 102981 to 103581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,659 DEBUG Processing 308/667 atomic regions from SNP 92350 to 92950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,694 DEBUG Processing 84/545 atomic regions from SNP 24969 to 25569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,708 DEBUG Processing 688/712 atomic regions from SNP 206236 to 206836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,710 DEBUG Processing 67/585 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,733 DEBUG Processing 226/640 atomic regions from SNP 67541 to 68141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,756 DEBUG Processing 345/709 atomic regions from SNP 103281 to 103881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,870 DEBUG Processing 309/667 atomic regions from SNP 92650 to 93250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,900 DEBUG Processing 85/545 atomic regions from SNP 25269 to 25869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,904 DEBUG Processing 68/585 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,940 DEBUG Processing 227/640 atomic regions from SNP 67841 to 68441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,949 DEBUG Processing 689/712 atomic regions from SNP 206536 to 207136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,968 DEBUG Processing 346/709 atomic regions from SNP 103581 to 104181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,081 DEBUG Processing 310/667 atomic regions from SNP 92950 to 93550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,094 DEBUG Processing 69/585 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,097 DEBUG Processing 86/545 atomic regions from SNP 25569 to 26169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,146 DEBUG Processing 228/640 atomic regions from SNP 68141 to 68741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,172 DEBUG Processing 690/712 atomic regions from SNP 206836 to 207436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,177 DEBUG Processing 347/709 atomic regions from SNP 103881 to 104481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,289 DEBUG Processing 87/545 atomic regions from SNP 25869 to 26469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,291 DEBUG Processing 311/667 atomic regions from SNP 93250 to 93850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,292 DEBUG Processing 70/585 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,355 DEBUG Processing 229/640 atomic regions from SNP 68441 to 69041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,383 DEBUG Processing 348/709 atomic regions from SNP 104181 to 104781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,417 DEBUG Processing 691/712 atomic regions from SNP 207136 to 207736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,492 DEBUG Processing 71/585 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,504 DEBUG Processing 312/667 atomic regions from SNP 93550 to 94150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,509 DEBUG Processing 88/545 atomic regions from SNP 26169 to 26769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,561 DEBUG Processing 230/640 atomic regions from SNP 68741 to 69341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,586 DEBUG Processing 349/709 atomic regions from SNP 104481 to 105081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,641 DEBUG Processing 692/712 atomic regions from SNP 207436 to 208036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,690 DEBUG Processing 72/585 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,712 DEBUG Processing 89/545 atomic regions from SNP 26469 to 27069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,713 DEBUG Processing 313/667 atomic regions from SNP 93850 to 94450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,768 DEBUG Processing 231/640 atomic regions from SNP 69041 to 69641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,793 DEBUG Processing 350/709 atomic regions from SNP 104781 to 105381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,867 DEBUG Processing 693/712 atomic regions from SNP 207736 to 208336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,888 DEBUG Processing 73/585 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,924 DEBUG Processing 90/545 atomic regions from SNP 26769 to 27369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,925 DEBUG Processing 314/667 atomic regions from SNP 94150 to 94750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,974 DEBUG Processing 232/640 atomic regions from SNP 69341 to 69941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,002 DEBUG Processing 351/709 atomic regions from SNP 105081 to 105681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,086 DEBUG Processing 74/585 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,100 DEBUG Processing 694/712 atomic regions from SNP 208036 to 208636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,140 DEBUG Processing 315/667 atomic regions from SNP 94450 to 95050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,143 DEBUG Processing 91/545 atomic regions from SNP 27069 to 27669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,180 DEBUG Processing 233/640 atomic regions from SNP 69641 to 70241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,210 DEBUG Processing 352/709 atomic regions from SNP 105381 to 105981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,280 DEBUG Processing 75/585 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,334 DEBUG Processing 695/712 atomic regions from SNP 208336 to 208936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,340 DEBUG Processing 92/545 atomic regions from SNP 27369 to 27969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,357 DEBUG Processing 316/667 atomic regions from SNP 94750 to 95350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,390 DEBUG Processing 234/640 atomic regions from SNP 69941 to 70541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,419 DEBUG Processing 353/709 atomic regions from SNP 105681 to 106281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,472 DEBUG Processing 76/585 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,532 DEBUG Processing 93/545 atomic regions from SNP 27669 to 28269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,577 DEBUG Processing 317/667 atomic regions from SNP 95050 to 95650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,580 DEBUG Processing 696/712 atomic regions from SNP 208636 to 209236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,602 DEBUG Processing 235/640 atomic regions from SNP 70241 to 70841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,634 DEBUG Processing 354/709 atomic regions from SNP 105981 to 106581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,667 DEBUG Processing 77/585 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,719 DEBUG Processing 94/545 atomic regions from SNP 27969 to 28569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,813 DEBUG Processing 697/712 atomic regions from SNP 208936 to 209536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,819 DEBUG Processing 318/667 atomic regions from SNP 95350 to 95950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,825 DEBUG Processing 236/640 atomic regions from SNP 70541 to 71141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,847 DEBUG Processing 355/709 atomic regions from SNP 106281 to 106881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,863 DEBUG Processing 78/585 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,905 DEBUG Processing 95/545 atomic regions from SNP 28269 to 28869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,040 DEBUG Processing 237/640 atomic regions from SNP 70841 to 71441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,062 DEBUG Processing 356/709 atomic regions from SNP 106581 to 107181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,063 DEBUG Processing 319/667 atomic regions from SNP 95650 to 96250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,063 DEBUG Processing 698/712 atomic regions from SNP 209236 to 209836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,065 DEBUG Processing 79/585 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,098 DEBUG Processing 96/545 atomic regions from SNP 28569 to 29169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,253 DEBUG Processing 238/640 atomic regions from SNP 71141 to 71741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,266 DEBUG Processing 80/585 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,278 DEBUG Processing 357/709 atomic regions from SNP 106881 to 107481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,294 DEBUG Processing 97/545 atomic regions from SNP 28869 to 29469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,296 DEBUG Processing 320/667 atomic regions from SNP 95950 to 96550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,306 DEBUG Processing 699/712 atomic regions from SNP 209536 to 210136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,460 DEBUG Processing 81/585 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,463 DEBUG Processing 239/640 atomic regions from SNP 71441 to 72041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,484 DEBUG Processing 98/545 atomic regions from SNP 29169 to 29769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,492 DEBUG Processing 358/709 atomic regions from SNP 107181 to 107781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,530 DEBUG Processing 321/667 atomic regions from SNP 96250 to 96850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,540 DEBUG Processing 700/712 atomic regions from SNP 209836 to 210436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,649 DEBUG Processing 82/585 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,664 DEBUG Processing 240/640 atomic regions from SNP 71741 to 72341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,671 DEBUG Processing 99/545 atomic regions from SNP 29469 to 30069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,702 DEBUG Processing 359/709 atomic regions from SNP 107481 to 108081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,747 DEBUG Processing 322/667 atomic regions from SNP 96550 to 97150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,774 DEBUG Processing 701/712 atomic regions from SNP 210136 to 210736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,844 DEBUG Processing 83/585 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,855 DEBUG Processing 100/545 atomic regions from SNP 29769 to 30369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,869 DEBUG Processing 241/640 atomic regions from SNP 72041 to 72641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,908 DEBUG Processing 360/709 atomic regions from SNP 107781 to 108381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,962 DEBUG Processing 323/667 atomic regions from SNP 96850 to 97450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,010 DEBUG Processing 702/712 atomic regions from SNP 210436 to 211036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,043 DEBUG Processing 84/585 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,050 DEBUG Processing 101/545 atomic regions from SNP 30069 to 30669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,086 DEBUG Processing 242/640 atomic regions from SNP 72341 to 72941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,115 DEBUG Processing 361/709 atomic regions from SNP 108081 to 108681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,165 DEBUG Processing 324/667 atomic regions from SNP 97150 to 97750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,239 DEBUG Processing 703/712 atomic regions from SNP 210736 to 211336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,242 DEBUG Processing 85/585 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,253 DEBUG Processing 102/545 atomic regions from SNP 30369 to 30969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,304 DEBUG Processing 243/640 atomic regions from SNP 72641 to 73241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,328 DEBUG Processing 362/709 atomic regions from SNP 108381 to 108981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,378 DEBUG Processing 325/667 atomic regions from SNP 97450 to 98050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,436 DEBUG Processing 86/585 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,466 DEBUG Processing 704/712 atomic regions from SNP 211036 to 211636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,473 DEBUG Processing 103/545 atomic regions from SNP 30669 to 31269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,522 DEBUG Processing 244/640 atomic regions from SNP 72941 to 73541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,540 DEBUG Processing 363/709 atomic regions from SNP 108681 to 109281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,597 DEBUG Processing 326/667 atomic regions from SNP 97750 to 98350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,628 DEBUG Processing 87/585 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,678 DEBUG Processing 104/545 atomic regions from SNP 30969 to 31569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,693 DEBUG Processing 705/712 atomic regions from SNP 211336 to 211936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,734 DEBUG Processing 245/640 atomic regions from SNP 73241 to 73841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,751 DEBUG Processing 364/709 atomic regions from SNP 108981 to 109581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,826 DEBUG Processing 88/585 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,826 DEBUG Processing 327/667 atomic regions from SNP 98050 to 98650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,862 DEBUG Processing 105/545 atomic regions from SNP 31269 to 31869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,922 DEBUG Processing 706/712 atomic regions from SNP 211636 to 212236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,942 DEBUG Processing 246/640 atomic regions from SNP 73541 to 74141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,959 DEBUG Processing 365/709 atomic regions from SNP 109281 to 109881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,020 DEBUG Processing 89/585 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,051 DEBUG Processing 106/545 atomic regions from SNP 31569 to 32169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,071 DEBUG Processing 328/667 atomic regions from SNP 98350 to 98950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,150 DEBUG Processing 247/640 atomic regions from SNP 73841 to 74441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,152 DEBUG Processing 707/712 atomic regions from SNP 211936 to 212536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,164 DEBUG Processing 366/709 atomic regions from SNP 109581 to 110181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,213 DEBUG Processing 90/585 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,250 DEBUG Processing 107/545 atomic regions from SNP 31869 to 32469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,317 DEBUG Processing 329/667 atomic regions from SNP 98650 to 99250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,363 DEBUG Processing 248/640 atomic regions from SNP 74141 to 74741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,371 DEBUG Processing 367/709 atomic regions from SNP 109881 to 110481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,384 DEBUG Processing 708/712 atomic regions from SNP 212236 to 212836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,403 DEBUG Processing 91/585 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,455 DEBUG Processing 108/545 atomic regions from SNP 32169 to 32769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,532 DEBUG Processing 330/667 atomic regions from SNP 98950 to 99550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,577 DEBUG Processing 249/640 atomic regions from SNP 74441 to 75041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,578 DEBUG Processing 368/709 atomic regions from SNP 110181 to 110781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,594 DEBUG Processing 92/585 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,616 DEBUG Processing 709/712 atomic regions from SNP 212536 to 213136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,640 DEBUG Processing 109/545 atomic regions from SNP 32469 to 33069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,740 DEBUG Processing 331/667 atomic regions from SNP 99250 to 99850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,785 DEBUG Processing 369/709 atomic regions from SNP 110481 to 111081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,787 DEBUG Processing 93/585 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,792 DEBUG Processing 250/640 atomic regions from SNP 74741 to 75341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,822 DEBUG Processing 110/545 atomic regions from SNP 32769 to 33369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,837 DEBUG Processing 710/712 atomic regions from SNP 212836 to 213436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,954 DEBUG Processing 332/667 atomic regions from SNP 99550 to 100150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,984 DEBUG Processing 94/585 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,003 DEBUG Processing 370/709 atomic regions from SNP 110781 to 111381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,025 DEBUG Processing 111/545 atomic regions from SNP 33069 to 33669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,026 DEBUG Processing 251/640 atomic regions from SNP 75041 to 75641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,060 DEBUG Processing 711/712 atomic regions from SNP 213136 to 213736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,167 DEBUG Processing 333/667 atomic regions from SNP 99850 to 100450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,182 DEBUG Processing 95/585 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,216 DEBUG Processing 371/709 atomic regions from SNP 111081 to 111681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,240 DEBUG Processing 112/545 atomic regions from SNP 33369 to 33969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,258 DEBUG Processing 252/640 atomic regions from SNP 75341 to 75941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,283 DEBUG Processing 712/712 atomic regions from SNP 213436 to 214036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,377 DEBUG Processing 96/585 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,381 DEBUG Processing 334/667 atomic regions from SNP 100150 to 100750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,428 DEBUG Processing 113/545 atomic regions from SNP 33669 to 34269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,430 DEBUG Processing 372/709 atomic regions from SNP 111381 to 111981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,438 DEBUG Unique SNPs positions in subchromosome 1: 214037 2025-01-31 09:50:51,468 DEBUG Processing 253/640 atomic regions from SNP 75641 to 76241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,573 DEBUG Processing 97/585 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,594 DEBUG Processing 335/667 atomic regions from SNP 100450 to 101050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,616 DEBUG Processing 114/545 atomic regions from SNP 33969 to 34569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,638 DEBUG Processing 373/709 atomic regions from SNP 111681 to 112281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,676 DEBUG Processing 254/640 atomic regions from SNP 75941 to 76541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,762 DEBUG Processing 98/585 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,801 DEBUG Processing 115/545 atomic regions from SNP 34269 to 34869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,804 DEBUG Processing 336/667 atomic regions from SNP 100750 to 101350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,845 DEBUG Processing 374/709 atomic regions from SNP 111981 to 112581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,882 DEBUG Processing 255/640 atomic regions from SNP 76241 to 76841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,952 DEBUG Processing 99/585 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,986 DEBUG Processing 116/545 atomic regions from SNP 34569 to 35169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,018 DEBUG Processing 337/667 atomic regions from SNP 101050 to 101650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,054 DEBUG Processing 375/709 atomic regions from SNP 112281 to 112881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,105 DEBUG Processing 256/640 atomic regions from SNP 76541 to 77141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,145 DEBUG Processing 100/585 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,212 DEBUG Processing 117/545 atomic regions from SNP 34869 to 35469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,229 DEBUG Processing 338/667 atomic regions from SNP 101350 to 101950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,258 DEBUG Processing 376/709 atomic regions from SNP 112581 to 113181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,314 DEBUG Processing 257/640 atomic regions from SNP 76841 to 77441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,335 DEBUG Processing 101/585 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,400 DEBUG Processing 118/545 atomic regions from SNP 35169 to 35769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,439 DEBUG Processing 339/667 atomic regions from SNP 101650 to 102250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,465 DEBUG Processing 377/709 atomic regions from SNP 112881 to 113481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,524 DEBUG Processing 258/640 atomic regions from SNP 77141 to 77741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,526 DEBUG Processing 102/585 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,585 DEBUG Processing 119/545 atomic regions from SNP 35469 to 36069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,648 DEBUG Processing 340/667 atomic regions from SNP 101950 to 102550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,669 DEBUG Processing 378/709 atomic regions from SNP 113181 to 113781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,716 DEBUG Processing 103/585 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,732 DEBUG Processing 259/640 atomic regions from SNP 77441 to 78041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,771 DEBUG Processing 120/545 atomic regions from SNP 35769 to 36369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,861 DEBUG Processing 341/667 atomic regions from SNP 102250 to 102850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,878 DEBUG Processing 379/709 atomic regions from SNP 113481 to 114081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,908 DEBUG Processing 104/585 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,937 DEBUG Processing 260/640 atomic regions from SNP 77741 to 78341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,956 DEBUG Processing 121/545 atomic regions from SNP 36069 to 36669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,074 DEBUG Processing 342/667 atomic regions from SNP 102550 to 103150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,084 DEBUG Processing 380/709 atomic regions from SNP 113781 to 114381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,099 DEBUG Processing 105/585 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,116 DEBUG Subchromosome time: 187.35597038804553, subchromosome SNPs: 214037 2025-01-31 09:50:53,117 DEBUG Estimated BADs: [0.77, 4.63, 1.16, 11.57, 2.31, 0.58, 18.51, 2.31, 4.63, 2.31, 1.16, 0.39, 2.31, 6.94, 2.31, 4.63] SNP counts: [16340, 3023, 8847, 2616, 28509, 4133, 165, 30248, 17105, 23642, 18583, 4793, 22954, 7980, 17380, 7719] SNP IDs counts: [16340, 3023, 8847, 2616, 28509, 4133, 165, 30248, 17105, 23642, 18583, 4793, 22954, 7980, 17380, 7719] Critical gap: 603171bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.30Mbp, 15.02Mbp, 20.57Mbp, 21.96Mbp, 38.10Mbp, 40.76Mbp, 40.84Mbp, 57.07Mbp, 66.06Mbp, 79.16Mbp, 90.56Mbp, 93.65Mbp, 106.14Mbp, 110.61Mbp, 120.11Mbp, 124.60Mbp] 2025-01-31 09:50:53,117 DEBUG chr9 time: 187.35662762704305 s 2025-01-31 09:50:53,140 DEBUG Processing 122/545 atomic regions from SNP 36369 to 36969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,142 DEBUG Processing 261/640 atomic regions from SNP 78041 to 78641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,244 DEBUG chr9: Fitting background model for 16 segments 2025-01-31 09:50:53,289 DEBUG Processing 343/667 atomic regions from SNP 102850 to 103450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,294 DEBUG Processing 381/709 atomic regions from SNP 114081 to 114681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,295 DEBUG Processing 106/585 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,332 DEBUG Processing 123/545 atomic regions from SNP 36669 to 37269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,352 DEBUG Processing 262/640 atomic regions from SNP 78341 to 78941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,489 DEBUG Processing 107/585 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,504 DEBUG Processing 344/667 atomic regions from SNP 103150 to 103750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,507 DEBUG Processing 382/709 atomic regions from SNP 114381 to 114981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,521 DEBUG Processing 124/545 atomic regions from SNP 36969 to 37569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,563 DEBUG Processing 263/640 atomic regions from SNP 78641 to 79241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,684 DEBUG Processing 108/585 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,710 DEBUG Processing 125/545 atomic regions from SNP 37269 to 37869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,724 DEBUG Processing 345/667 atomic regions from SNP 103450 to 104050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,725 DEBUG Processing 383/709 atomic regions from SNP 114681 to 115281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,775 DEBUG Processing 264/640 atomic regions from SNP 78941 to 79541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,879 DEBUG Processing 109/585 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,897 DEBUG Processing 126/545 atomic regions from SNP 37569 to 38169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,953 DEBUG Processing 346/667 atomic regions from SNP 103750 to 104350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,969 DEBUG Processing 384/709 atomic regions from SNP 114981 to 115581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,987 DEBUG Processing 265/640 atomic regions from SNP 79241 to 79841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,076 DEBUG Processing 110/585 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,085 DEBUG Processing 127/545 atomic regions from SNP 37869 to 38469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,195 DEBUG Processing 347/667 atomic regions from SNP 104050 to 104650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,199 DEBUG Processing 266/640 atomic regions from SNP 79541 to 80141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,203 DEBUG Processing 385/709 atomic regions from SNP 115281 to 115881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,267 DEBUG Processing 111/585 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,268 DEBUG Processing 128/545 atomic regions from SNP 38169 to 38769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,418 DEBUG Processing 267/640 atomic regions from SNP 79841 to 80441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,424 DEBUG Processing 348/667 atomic regions from SNP 104350 to 104950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,439 DEBUG Processing 386/709 atomic regions from SNP 115581 to 116181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,458 DEBUG Processing 129/545 atomic regions from SNP 38469 to 39069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,462 DEBUG Processing 112/585 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,634 DEBUG Processing 268/640 atomic regions from SNP 80141 to 80741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,649 DEBUG Processing 130/545 atomic regions from SNP 38769 to 39369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,653 DEBUG Processing 349/667 atomic regions from SNP 104650 to 105250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,657 DEBUG Processing 113/585 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,682 DEBUG Processing 387/709 atomic regions from SNP 115881 to 116481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,842 DEBUG Processing 131/545 atomic regions from SNP 39069 to 39669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,860 DEBUG Processing 114/585 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,871 DEBUG Processing 269/640 atomic regions from SNP 80441 to 81041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,877 DEBUG Processing 350/667 atomic regions from SNP 104950 to 105550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,931 DEBUG Processing 388/709 atomic regions from SNP 116181 to 116781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,029 DEBUG Processing 132/545 atomic regions from SNP 39369 to 39969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,059 DEBUG Processing 115/585 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,094 DEBUG Processing 270/640 atomic regions from SNP 80741 to 81341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,121 DEBUG Processing 351/667 atomic regions from SNP 105250 to 105850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,179 DEBUG Processing 389/709 atomic regions from SNP 116481 to 117081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,212 DEBUG Processing 133/545 atomic regions from SNP 39669 to 40269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,254 DEBUG Processing 116/585 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,317 DEBUG Processing 271/640 atomic regions from SNP 81041 to 81641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,353 DEBUG Processing 352/667 atomic regions from SNP 105550 to 106150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,399 DEBUG Processing 134/545 atomic regions from SNP 39969 to 40569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,425 DEBUG Processing 390/709 atomic regions from SNP 116781 to 117381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,449 DEBUG Processing 117/585 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,534 DEBUG Processing 272/640 atomic regions from SNP 81341 to 81941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,583 DEBUG Processing 353/667 atomic regions from SNP 105850 to 106450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,588 DEBUG Processing 135/545 atomic regions from SNP 40269 to 40869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,643 DEBUG Processing 118/585 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,656 DEBUG Processing 391/709 atomic regions from SNP 117081 to 117681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,749 DEBUG Processing 273/640 atomic regions from SNP 81641 to 82241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,776 DEBUG Processing 136/545 atomic regions from SNP 40569 to 41169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,798 DEBUG Processing 354/667 atomic regions from SNP 106150 to 106750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,840 DEBUG Processing 119/585 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,886 DEBUG Processing 392/709 atomic regions from SNP 117381 to 117981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,956 DEBUG Processing 137/545 atomic regions from SNP 40869 to 41469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,963 DEBUG Processing 274/640 atomic regions from SNP 81941 to 82541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,013 DEBUG Processing 355/667 atomic regions from SNP 106450 to 107050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,034 DEBUG Processing 120/585 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,121 DEBUG Processing 393/709 atomic regions from SNP 117681 to 118281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,139 DEBUG Processing 138/545 atomic regions from SNP 41169 to 41769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,177 DEBUG Processing 275/640 atomic regions from SNP 82241 to 82841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,226 DEBUG Processing 121/585 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,233 DEBUG Processing 356/667 atomic regions from SNP 106750 to 107350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,322 DEBUG Processing 139/545 atomic regions from SNP 41469 to 42069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,360 DEBUG Processing 394/709 atomic regions from SNP 117981 to 118581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,390 DEBUG Processing 276/640 atomic regions from SNP 82541 to 83141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,417 DEBUG Processing 122/585 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,453 DEBUG Processing 357/667 atomic regions from SNP 107050 to 107650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,505 DEBUG Processing 140/545 atomic regions from SNP 41769 to 42369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,587 DEBUG Processing 395/709 atomic regions from SNP 118281 to 118881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,600 DEBUG Processing 277/640 atomic regions from SNP 82841 to 83441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,607 DEBUG Processing 123/585 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,670 DEBUG Processing 358/667 atomic regions from SNP 107350 to 107950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,689 DEBUG Processing 141/545 atomic regions from SNP 42069 to 42669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,793 DEBUG Processing 396/709 atomic regions from SNP 118581 to 119181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,798 DEBUG Processing 124/585 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,810 DEBUG Processing 278/640 atomic regions from SNP 83141 to 83741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,874 DEBUG Processing 142/545 atomic regions from SNP 42369 to 42969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,886 DEBUG Processing 359/667 atomic regions from SNP 107650 to 108250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,986 DEBUG Processing 125/585 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,999 DEBUG Processing 397/709 atomic regions from SNP 118881 to 119481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,017 DEBUG Processing 279/640 atomic regions from SNP 83441 to 84041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,059 DEBUG Processing 143/545 atomic regions from SNP 42669 to 43269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,104 DEBUG Processing 360/667 atomic regions from SNP 107950 to 108550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,176 DEBUG Processing 126/585 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,206 DEBUG Processing 398/709 atomic regions from SNP 119181 to 119781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,222 DEBUG Processing 280/640 atomic regions from SNP 83741 to 84341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,241 DEBUG Processing 144/545 atomic regions from SNP 42969 to 43569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,322 DEBUG Processing 361/667 atomic regions from SNP 108250 to 108850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,372 DEBUG Processing 127/585 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,417 DEBUG Processing 399/709 atomic regions from SNP 119481 to 120081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,425 DEBUG Processing 281/640 atomic regions from SNP 84041 to 84641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,426 DEBUG Processing 145/545 atomic regions from SNP 43269 to 43869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,539 DEBUG Processing 362/667 atomic regions from SNP 108550 to 109150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,571 DEBUG Processing 128/585 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,613 DEBUG Processing 146/545 atomic regions from SNP 43569 to 44169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,629 DEBUG Processing 282/640 atomic regions from SNP 84341 to 84941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,631 DEBUG Processing 400/709 atomic regions from SNP 119781 to 120381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,751 DEBUG Processing 363/667 atomic regions from SNP 108850 to 109450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,770 DEBUG Processing 129/585 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,804 DEBUG Processing 147/545 atomic regions from SNP 43869 to 44469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,840 DEBUG Processing 283/640 atomic regions from SNP 84641 to 85241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,845 DEBUG Processing 401/709 atomic regions from SNP 120081 to 120681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,950 DEBUG Processing 364/667 atomic regions from SNP 109150 to 109750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,958 DEBUG Processing 130/585 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,992 DEBUG Processing 148/545 atomic regions from SNP 44169 to 44769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,057 DEBUG Processing 284/640 atomic regions from SNP 84941 to 85541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,058 DEBUG Processing 402/709 atomic regions from SNP 120381 to 120981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,148 DEBUG Processing 131/585 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,161 DEBUG Processing 365/667 atomic regions from SNP 109450 to 110050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,171 DEBUG Processing 149/545 atomic regions from SNP 44469 to 45069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,261 DEBUG Processing 285/640 atomic regions from SNP 85241 to 85841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,264 DEBUG Processing 403/709 atomic regions from SNP 120681 to 121281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,340 DEBUG Processing 132/585 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,354 DEBUG Processing 150/545 atomic regions from SNP 44769 to 45369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,367 DEBUG Processing 366/667 atomic regions from SNP 109750 to 110350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,463 DEBUG Processing 286/640 atomic regions from SNP 85541 to 86141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,470 DEBUG Processing 404/709 atomic regions from SNP 120981 to 121581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,533 DEBUG Processing 133/585 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,539 DEBUG Processing 151/545 atomic regions from SNP 45069 to 45669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,578 DEBUG Processing 367/667 atomic regions from SNP 110050 to 110650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,664 DEBUG Processing 287/640 atomic regions from SNP 85841 to 86441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,691 DEBUG Processing 405/709 atomic regions from SNP 121281 to 121881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,726 DEBUG Processing 152/545 atomic regions from SNP 45369 to 45969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,730 DEBUG Processing 134/585 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,791 DEBUG Processing 368/667 atomic regions from SNP 110350 to 110950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,870 DEBUG Processing 288/640 atomic regions from SNP 86141 to 86741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,904 DEBUG Processing 406/709 atomic regions from SNP 121581 to 122181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,917 DEBUG Processing 153/545 atomic regions from SNP 45669 to 46269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,931 DEBUG Processing 135/585 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,999 DEBUG Processing 369/667 atomic regions from SNP 110650 to 111250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,077 DEBUG Processing 289/640 atomic regions from SNP 86441 to 87041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,108 DEBUG Processing 154/545 atomic regions from SNP 45969 to 46569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,117 DEBUG Processing 407/709 atomic regions from SNP 121881 to 122481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,130 DEBUG Processing 136/585 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,207 DEBUG Processing 370/667 atomic regions from SNP 110950 to 111550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,285 DEBUG Processing 290/640 atomic regions from SNP 86741 to 87341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,298 DEBUG Processing 155/545 atomic regions from SNP 46269 to 46869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,328 DEBUG Processing 137/585 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,331 DEBUG Processing 408/709 atomic regions from SNP 122181 to 122781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,418 DEBUG Processing 371/667 atomic regions from SNP 111250 to 111850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,483 DEBUG Processing 156/545 atomic regions from SNP 46569 to 47169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,493 DEBUG Processing 291/640 atomic regions from SNP 87041 to 87641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,521 DEBUG Processing 138/585 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,552 DEBUG Processing 409/709 atomic regions from SNP 122481 to 123081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,653 DEBUG Processing 372/667 atomic regions from SNP 111550 to 112150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,666 DEBUG Processing 157/545 atomic regions from SNP 46869 to 47469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,699 DEBUG Processing 292/640 atomic regions from SNP 87341 to 87941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,718 DEBUG Processing 139/585 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,764 DEBUG Processing 410/709 atomic regions from SNP 122781 to 123381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,848 DEBUG Processing 158/545 atomic regions from SNP 47169 to 47769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,887 DEBUG Processing 373/667 atomic regions from SNP 111850 to 112450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,911 DEBUG Processing 140/585 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,935 DEBUG Processing 293/640 atomic regions from SNP 87641 to 88241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,972 DEBUG Processing 411/709 atomic regions from SNP 123081 to 123681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,029 DEBUG Processing 159/545 atomic regions from SNP 47469 to 48069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,100 DEBUG Processing 374/667 atomic regions from SNP 112150 to 112750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,108 DEBUG Processing 141/585 atomic regions from SNP 42140 to 42741 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,160 DEBUG Processing 294/640 atomic regions from SNP 87941 to 88541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,189 DEBUG Processing 412/709 atomic regions from SNP 123381 to 123981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,213 DEBUG Processing 160/545 atomic regions from SNP 47769 to 48369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,296 DEBUG Processing 142/585 atomic regions from SNP 42441 to 43042 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,313 DEBUG Processing 375/667 atomic regions from SNP 112450 to 113050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,369 DEBUG Processing 295/640 atomic regions from SNP 88241 to 88841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,399 DEBUG Processing 161/545 atomic regions from SNP 48069 to 48669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,402 DEBUG Processing 413/709 atomic regions from SNP 123681 to 124281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,481 DEBUG Processing 143/585 atomic regions from SNP 42742 to 43343 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,527 DEBUG Processing 376/667 atomic regions from SNP 112750 to 113350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,577 DEBUG Processing 296/640 atomic regions from SNP 88541 to 89141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,589 DEBUG Processing 162/545 atomic regions from SNP 48369 to 48969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,615 DEBUG Processing 414/709 atomic regions from SNP 123981 to 124581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,668 DEBUG Processing 144/585 atomic regions from SNP 43043 to 43644 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,739 DEBUG Processing 377/667 atomic regions from SNP 113050 to 113650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,777 DEBUG Processing 163/545 atomic regions from SNP 48669 to 49269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,789 DEBUG Processing 297/640 atomic regions from SNP 88841 to 89441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,830 DEBUG Processing 415/709 atomic regions from SNP 124281 to 124881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,863 DEBUG Processing 145/585 atomic regions from SNP 43344 to 43945 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,953 DEBUG Processing 378/667 atomic regions from SNP 113350 to 113950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,961 DEBUG Processing 164/545 atomic regions from SNP 48969 to 49569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,000 DEBUG Processing 298/640 atomic regions from SNP 89141 to 89741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,045 DEBUG Processing 416/709 atomic regions from SNP 124581 to 125181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,057 DEBUG Processing 146/585 atomic regions from SNP 43645 to 44246 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,145 DEBUG Processing 165/545 atomic regions from SNP 49269 to 49869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,165 DEBUG Processing 379/667 atomic regions from SNP 113650 to 114250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,215 DEBUG Processing 299/640 atomic regions from SNP 89441 to 90041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,256 DEBUG Processing 147/585 atomic regions from SNP 43946 to 44547 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,257 DEBUG Processing 417/709 atomic regions from SNP 124881 to 125481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,329 DEBUG Processing 166/545 atomic regions from SNP 49569 to 50169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,374 DEBUG Processing 380/667 atomic regions from SNP 113950 to 114550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,430 DEBUG Processing 300/640 atomic regions from SNP 89741 to 90341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,454 DEBUG Processing 148/585 atomic regions from SNP 44247 to 44848 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,490 DEBUG Processing 418/709 atomic regions from SNP 125181 to 125781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,522 DEBUG Processing 167/545 atomic regions from SNP 49869 to 50469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,581 DEBUG Processing 381/667 atomic regions from SNP 114250 to 114850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,641 DEBUG Processing 301/640 atomic regions from SNP 90041 to 90641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,646 DEBUG Processing 149/585 atomic regions from SNP 44548 to 45149 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,728 DEBUG Processing 168/545 atomic regions from SNP 50169 to 50769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,740 DEBUG Processing 419/709 atomic regions from SNP 125481 to 126081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,792 DEBUG Processing 382/667 atomic regions from SNP 114550 to 115150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,835 DEBUG Processing 150/585 atomic regions from SNP 44849 to 45450 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,845 DEBUG Processing 302/640 atomic regions from SNP 90341 to 90941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,927 DEBUG Processing 169/545 atomic regions from SNP 50469 to 51069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,965 DEBUG Processing 420/709 atomic regions from SNP 125781 to 126381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,008 DEBUG Processing 383/667 atomic regions from SNP 114850 to 115450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,035 DEBUG Processing 151/585 atomic regions from SNP 45150 to 45751 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,049 DEBUG Processing 303/640 atomic regions from SNP 90641 to 91241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,110 DEBUG Processing 170/545 atomic regions from SNP 50769 to 51369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,193 DEBUG Processing 421/709 atomic regions from SNP 126081 to 126681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,227 DEBUG Processing 384/667 atomic regions from SNP 115150 to 115750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,241 DEBUG Processing 152/585 atomic regions from SNP 45451 to 46052 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,260 DEBUG Processing 304/640 atomic regions from SNP 90941 to 91541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,298 DEBUG Processing 171/545 atomic regions from SNP 51069 to 51669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,428 DEBUG Processing 422/709 atomic regions from SNP 126381 to 126981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,443 DEBUG Processing 385/667 atomic regions from SNP 115450 to 116050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,447 DEBUG Processing 153/585 atomic regions from SNP 45752 to 46353 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,472 DEBUG Processing 305/640 atomic regions from SNP 91241 to 91841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,491 DEBUG Processing 172/545 atomic regions from SNP 51369 to 51969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,653 DEBUG Processing 154/585 atomic regions from SNP 46053 to 46654 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,661 DEBUG Processing 386/667 atomic regions from SNP 115750 to 116350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,683 DEBUG Processing 423/709 atomic regions from SNP 126681 to 127281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,687 DEBUG Processing 306/640 atomic regions from SNP 91541 to 92141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,696 DEBUG Processing 173/545 atomic regions from SNP 51669 to 52269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,853 DEBUG Processing 155/585 atomic regions from SNP 46354 to 46955 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,876 DEBUG Processing 387/667 atomic regions from SNP 116050 to 116650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,901 DEBUG Processing 307/640 atomic regions from SNP 91841 to 92441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,908 DEBUG Processing 174/545 atomic regions from SNP 51969 to 52569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,926 DEBUG Processing 424/709 atomic regions from SNP 126981 to 127581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,046 DEBUG Processing 156/585 atomic regions from SNP 46655 to 47256 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,086 DEBUG Processing 388/667 atomic regions from SNP 116350 to 116950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,114 DEBUG Processing 308/640 atomic regions from SNP 92141 to 92741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,129 DEBUG Processing 175/545 atomic regions from SNP 52269 to 52869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,153 DEBUG Processing 425/709 atomic regions from SNP 127281 to 127881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,240 DEBUG Processing 157/585 atomic regions from SNP 46956 to 47557 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,326 DEBUG Processing 389/667 atomic regions from SNP 116650 to 117250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,327 DEBUG Processing 176/545 atomic regions from SNP 52569 to 53169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,330 DEBUG Processing 309/640 atomic regions from SNP 92441 to 93041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,377 DEBUG Processing 426/709 atomic regions from SNP 127581 to 128181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,439 DEBUG Processing 158/585 atomic regions from SNP 47257 to 47858 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,528 DEBUG Processing 177/545 atomic regions from SNP 52869 to 53469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,546 DEBUG Processing 310/640 atomic regions from SNP 92741 to 93341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,552 DEBUG Processing 390/667 atomic regions from SNP 116950 to 117550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,600 DEBUG Processing 427/709 atomic regions from SNP 127881 to 128481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,639 DEBUG Processing 159/585 atomic regions from SNP 47558 to 48159 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,734 DEBUG Processing 178/545 atomic regions from SNP 53169 to 53769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,758 DEBUG Processing 311/640 atomic regions from SNP 93041 to 93641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,767 DEBUG Processing 391/667 atomic regions from SNP 117250 to 117850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,822 DEBUG Processing 428/709 atomic regions from SNP 128181 to 128781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,848 DEBUG Processing 160/585 atomic regions from SNP 47859 to 48460 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,921 DEBUG Processing 179/545 atomic regions from SNP 53469 to 54069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,972 DEBUG Processing 312/640 atomic regions from SNP 93341 to 93941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,987 DEBUG Processing 392/667 atomic regions from SNP 117550 to 118150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,044 DEBUG Processing 429/709 atomic regions from SNP 128481 to 129081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,055 DEBUG Processing 161/585 atomic regions from SNP 48160 to 48761 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,112 DEBUG Processing 180/545 atomic regions from SNP 53769 to 54369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,191 DEBUG Processing 313/640 atomic regions from SNP 93641 to 94241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,208 DEBUG Processing 393/667 atomic regions from SNP 117850 to 118450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,258 DEBUG Processing 162/585 atomic regions from SNP 48461 to 49062 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,262 DEBUG Processing 430/709 atomic regions from SNP 128781 to 129381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,306 DEBUG Processing 181/545 atomic regions from SNP 54069 to 54669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,409 DEBUG Processing 314/640 atomic regions from SNP 93941 to 94541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,430 DEBUG Processing 394/667 atomic regions from SNP 118150 to 118750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,458 DEBUG Processing 163/585 atomic regions from SNP 48762 to 49363 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,479 DEBUG Processing 431/709 atomic regions from SNP 129081 to 129681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,499 DEBUG Processing 182/545 atomic regions from SNP 54369 to 54969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,627 DEBUG Processing 315/640 atomic regions from SNP 94241 to 94841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,654 DEBUG Processing 164/585 atomic regions from SNP 49063 to 49664 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,674 DEBUG Processing 395/667 atomic regions from SNP 118450 to 119050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,691 DEBUG Processing 183/545 atomic regions from SNP 54669 to 55269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,695 DEBUG Processing 432/709 atomic regions from SNP 129381 to 129981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,840 DEBUG Processing 316/640 atomic regions from SNP 94541 to 95141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,855 DEBUG Processing 165/585 atomic regions from SNP 49364 to 49965 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,890 DEBUG Processing 184/545 atomic regions from SNP 54969 to 55569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,918 DEBUG Processing 433/709 atomic regions from SNP 129681 to 130281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,922 DEBUG Processing 396/667 atomic regions from SNP 118750 to 119350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,051 DEBUG Processing 166/585 atomic regions from SNP 49665 to 50266 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,054 DEBUG Processing 317/640 atomic regions from SNP 94841 to 95441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,079 DEBUG Processing 185/545 atomic regions from SNP 55269 to 55869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,133 DEBUG Processing 434/709 atomic regions from SNP 129981 to 130581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,165 DEBUG Processing 397/667 atomic regions from SNP 119050 to 119650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,248 DEBUG Processing 167/585 atomic regions from SNP 49966 to 50567 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,265 DEBUG Processing 318/640 atomic regions from SNP 95141 to 95741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,270 DEBUG Processing 186/545 atomic regions from SNP 55569 to 56169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,370 DEBUG Processing 435/709 atomic regions from SNP 130281 to 130881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,397 DEBUG Processing 398/667 atomic regions from SNP 119350 to 119950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,446 DEBUG Processing 168/585 atomic regions from SNP 50267 to 50868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,461 DEBUG Processing 187/545 atomic regions from SNP 55869 to 56469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,477 DEBUG Processing 319/640 atomic regions from SNP 95441 to 96041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,600 DEBUG Processing 436/709 atomic regions from SNP 130581 to 131181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,628 DEBUG Processing 399/667 atomic regions from SNP 119650 to 120250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,650 DEBUG Processing 169/585 atomic regions from SNP 50568 to 51169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,658 DEBUG Processing 188/545 atomic regions from SNP 56169 to 56769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,695 DEBUG Processing 320/640 atomic regions from SNP 95741 to 96341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,839 DEBUG Processing 437/709 atomic regions from SNP 130881 to 131481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,860 DEBUG Processing 170/585 atomic regions from SNP 50869 to 51470 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,861 DEBUG Processing 189/545 atomic regions from SNP 56469 to 57069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,882 DEBUG Processing 400/667 atomic regions from SNP 119950 to 120550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,916 DEBUG Processing 321/640 atomic regions from SNP 96041 to 96641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,058 DEBUG Processing 190/545 atomic regions from SNP 56769 to 57369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,068 DEBUG Processing 171/585 atomic regions from SNP 51170 to 51771 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,074 DEBUG Processing 438/709 atomic regions from SNP 131181 to 131781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,114 DEBUG Processing 401/667 atomic regions from SNP 120250 to 120850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,133 DEBUG Processing 322/640 atomic regions from SNP 96341 to 96941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,254 DEBUG Processing 191/545 atomic regions from SNP 57069 to 57669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,271 DEBUG Processing 172/585 atomic regions from SNP 51471 to 52072 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,316 DEBUG Processing 439/709 atomic regions from SNP 131481 to 132081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,342 DEBUG Processing 402/667 atomic regions from SNP 120550 to 121150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,353 DEBUG Processing 323/640 atomic regions from SNP 96641 to 97241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,448 DEBUG Processing 192/545 atomic regions from SNP 57369 to 57969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,474 DEBUG Processing 173/585 atomic regions from SNP 51772 to 52373 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,568 DEBUG Processing 440/709 atomic regions from SNP 131781 to 132381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,569 DEBUG Processing 403/667 atomic regions from SNP 120850 to 121450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,575 DEBUG Processing 324/640 atomic regions from SNP 96941 to 97541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,635 DEBUG Processing 193/545 atomic regions from SNP 57669 to 58269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,666 DEBUG Processing 174/585 atomic regions from SNP 52073 to 52674 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,782 DEBUG Processing 404/667 atomic regions from SNP 121150 to 121750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,782 DEBUG Processing 325/640 atomic regions from SNP 97241 to 97841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,793 DEBUG Processing 441/709 atomic regions from SNP 132081 to 132681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,824 DEBUG Processing 194/545 atomic regions from SNP 57969 to 58569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,860 DEBUG Processing 175/585 atomic regions from SNP 52374 to 52975 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,995 DEBUG Processing 326/640 atomic regions from SNP 97541 to 98141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,999 DEBUG Processing 405/667 atomic regions from SNP 121450 to 122050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,024 DEBUG Processing 195/545 atomic regions from SNP 58269 to 58869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,033 DEBUG Processing 442/709 atomic regions from SNP 132381 to 132981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,061 DEBUG Processing 176/585 atomic regions from SNP 52675 to 53276 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,210 DEBUG Processing 327/640 atomic regions from SNP 97841 to 98441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,218 DEBUG Processing 406/667 atomic regions from SNP 121750 to 122350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,241 DEBUG Processing 196/545 atomic regions from SNP 58569 to 59169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,258 DEBUG Processing 443/709 atomic regions from SNP 132681 to 133281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,269 DEBUG Processing 177/585 atomic regions from SNP 52976 to 53577 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,427 DEBUG Processing 328/640 atomic regions from SNP 98141 to 98741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,439 DEBUG Processing 407/667 atomic regions from SNP 122050 to 122650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,444 DEBUG Processing 197/545 atomic regions from SNP 58869 to 59469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,477 DEBUG Processing 178/585 atomic regions from SNP 53277 to 53878 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,480 DEBUG Processing 444/709 atomic regions from SNP 132981 to 133581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,637 DEBUG Processing 198/545 atomic regions from SNP 59169 to 59769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,640 DEBUG Processing 329/640 atomic regions from SNP 98441 to 99041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,657 DEBUG Processing 408/667 atomic regions from SNP 122350 to 122950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,684 DEBUG Processing 179/585 atomic regions from SNP 53578 to 54179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,713 DEBUG Processing 445/709 atomic regions from SNP 133281 to 133881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,832 DEBUG Processing 199/545 atomic regions from SNP 59469 to 60069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,849 DEBUG Processing 330/640 atomic regions from SNP 98741 to 99341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,876 DEBUG Processing 409/667 atomic regions from SNP 122650 to 123250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,885 DEBUG Processing 180/585 atomic regions from SNP 53879 to 54480 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,931 DEBUG Processing 446/709 atomic regions from SNP 133581 to 134181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,021 DEBUG Processing 200/545 atomic regions from SNP 59769 to 60369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,060 DEBUG Processing 331/640 atomic regions from SNP 99041 to 99641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,086 DEBUG Processing 181/585 atomic regions from SNP 54180 to 54781 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,097 DEBUG Processing 410/667 atomic regions from SNP 122950 to 123550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,151 DEBUG Processing 447/709 atomic regions from SNP 133881 to 134481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,214 DEBUG Processing 201/545 atomic regions from SNP 60069 to 60669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,273 DEBUG Processing 332/640 atomic regions from SNP 99341 to 99941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,281 DEBUG Processing 182/585 atomic regions from SNP 54481 to 55082 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,316 DEBUG Processing 411/667 atomic regions from SNP 123250 to 123850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,365 DEBUG Processing 448/709 atomic regions from SNP 134181 to 134781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,409 DEBUG Processing 202/545 atomic regions from SNP 60369 to 60969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,477 DEBUG Processing 333/640 atomic regions from SNP 99641 to 100241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,480 DEBUG Processing 183/585 atomic regions from SNP 54782 to 55383 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,527 DEBUG Processing 412/667 atomic regions from SNP 123550 to 124150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,600 DEBUG Processing 449/709 atomic regions from SNP 134481 to 135081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,600 DEBUG Processing 203/545 atomic regions from SNP 60669 to 61269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,685 DEBUG Processing 184/585 atomic regions from SNP 55083 to 55684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,687 DEBUG Processing 334/640 atomic regions from SNP 99941 to 100541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,740 DEBUG Processing 413/667 atomic regions from SNP 123850 to 124450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,789 DEBUG Processing 204/545 atomic regions from SNP 60969 to 61569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,828 DEBUG Processing 450/709 atomic regions from SNP 134781 to 135381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,892 DEBUG Processing 185/585 atomic regions from SNP 55384 to 55985 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,902 DEBUG Processing 335/640 atomic regions from SNP 100241 to 100841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,955 DEBUG Processing 414/667 atomic regions from SNP 124150 to 124750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,974 DEBUG Processing 205/545 atomic regions from SNP 61269 to 61869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,042 DEBUG Processing 451/709 atomic regions from SNP 135081 to 135681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,100 DEBUG Processing 186/585 atomic regions from SNP 55685 to 56286 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,119 DEBUG Processing 336/640 atomic regions from SNP 100541 to 101141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,166 DEBUG Processing 206/545 atomic regions from SNP 61569 to 62169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,171 DEBUG Processing 415/667 atomic regions from SNP 124450 to 125050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,255 DEBUG Processing 452/709 atomic regions from SNP 135381 to 135981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,300 DEBUG Processing 187/585 atomic regions from SNP 55986 to 56587 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,336 DEBUG Processing 337/640 atomic regions from SNP 100841 to 101441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,368 DEBUG Processing 207/545 atomic regions from SNP 61869 to 62469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,389 DEBUG Processing 416/667 atomic regions from SNP 124750 to 125350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,463 DEBUG Processing 453/709 atomic regions from SNP 135681 to 136281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,494 DEBUG Processing 188/585 atomic regions from SNP 56287 to 56888 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,551 DEBUG Processing 338/640 atomic regions from SNP 101141 to 101741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,576 DEBUG Processing 208/545 atomic regions from SNP 62169 to 62769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,611 DEBUG Processing 417/667 atomic regions from SNP 125050 to 125650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,673 DEBUG Processing 454/709 atomic regions from SNP 135981 to 136581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,684 DEBUG Processing 189/585 atomic regions from SNP 56588 to 57189 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,764 DEBUG Processing 339/640 atomic regions from SNP 101441 to 102041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,768 DEBUG Processing 209/545 atomic regions from SNP 62469 to 63069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,835 DEBUG Processing 418/667 atomic regions from SNP 125350 to 125950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,883 DEBUG Processing 190/585 atomic regions from SNP 56889 to 57490 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,890 DEBUG Processing 455/709 atomic regions from SNP 136281 to 136881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,951 DEBUG Processing 210/545 atomic regions from SNP 62769 to 63369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,970 DEBUG Processing 340/640 atomic regions from SNP 101741 to 102341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,054 DEBUG Processing 419/667 atomic regions from SNP 125650 to 126250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,093 DEBUG Processing 191/585 atomic regions from SNP 57190 to 57791 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,111 DEBUG Processing 456/709 atomic regions from SNP 136581 to 137181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,148 DEBUG Processing 211/545 atomic regions from SNP 63069 to 63669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,172 DEBUG Processing 341/640 atomic regions from SNP 102041 to 102641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,268 DEBUG Processing 420/667 atomic regions from SNP 125950 to 126550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,295 DEBUG Processing 192/585 atomic regions from SNP 57491 to 58092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,329 DEBUG Processing 457/709 atomic regions from SNP 136881 to 137481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,345 DEBUG Processing 212/545 atomic regions from SNP 63369 to 63969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,378 DEBUG Processing 342/640 atomic regions from SNP 102341 to 102941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,482 DEBUG Processing 421/667 atomic regions from SNP 126250 to 126850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,498 DEBUG Processing 193/585 atomic regions from SNP 57792 to 58393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,546 DEBUG Processing 458/709 atomic regions from SNP 137181 to 137781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,546 DEBUG Processing 213/545 atomic regions from SNP 63669 to 64269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,586 DEBUG Processing 343/640 atomic regions from SNP 102641 to 103241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,691 DEBUG Processing 422/667 atomic regions from SNP 126550 to 127150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,718 DEBUG Processing 194/585 atomic regions from SNP 58093 to 58694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,742 DEBUG Processing 214/545 atomic regions from SNP 63969 to 64569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,763 DEBUG Processing 459/709 atomic regions from SNP 137481 to 138081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,801 DEBUG Processing 344/640 atomic regions from SNP 102941 to 103541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,916 DEBUG Processing 423/667 atomic regions from SNP 126850 to 127450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,940 DEBUG Processing 215/545 atomic regions from SNP 64269 to 64869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,951 DEBUG Processing 195/585 atomic regions from SNP 58394 to 58995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,979 DEBUG Processing 460/709 atomic regions from SNP 137781 to 138381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,027 DEBUG Processing 345/640 atomic regions from SNP 103241 to 103841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,139 DEBUG Processing 216/545 atomic regions from SNP 64569 to 65169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,150 DEBUG Processing 424/667 atomic regions from SNP 127150 to 127750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,157 DEBUG Processing 196/585 atomic regions from SNP 58695 to 59296 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,200 DEBUG Processing 461/709 atomic regions from SNP 138081 to 138681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,266 DEBUG Processing 346/640 atomic regions from SNP 103541 to 104141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,332 DEBUG Processing 217/545 atomic regions from SNP 64869 to 65469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,357 DEBUG Processing 197/585 atomic regions from SNP 58996 to 59597 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,362 DEBUG Processing 425/667 atomic regions from SNP 127450 to 128050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,417 DEBUG Processing 462/709 atomic regions from SNP 138381 to 138981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,494 DEBUG Processing 347/640 atomic regions from SNP 103841 to 104441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,525 DEBUG Processing 218/545 atomic regions from SNP 65169 to 65769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,555 DEBUG Processing 198/585 atomic regions from SNP 59297 to 59898 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,575 DEBUG Processing 426/667 atomic regions from SNP 127750 to 128350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,629 DEBUG Processing 463/709 atomic regions from SNP 138681 to 139281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,706 DEBUG Processing 348/640 atomic regions from SNP 104141 to 104741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,720 DEBUG Processing 219/545 atomic regions from SNP 65469 to 66069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,755 DEBUG Processing 199/585 atomic regions from SNP 59598 to 60199 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,790 DEBUG Processing 427/667 atomic regions from SNP 128050 to 128650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,843 DEBUG Processing 464/709 atomic regions from SNP 138981 to 139581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,919 DEBUG Processing 220/545 atomic regions from SNP 65769 to 66369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,924 DEBUG Processing 349/640 atomic regions from SNP 104441 to 105041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,961 DEBUG Processing 200/585 atomic regions from SNP 59899 to 60500 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,008 DEBUG Processing 428/667 atomic regions from SNP 128350 to 128950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,052 DEBUG Processing 465/709 atomic regions from SNP 139281 to 139881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,124 DEBUG Processing 221/545 atomic regions from SNP 66069 to 66669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,135 DEBUG Processing 350/640 atomic regions from SNP 104741 to 105341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,172 DEBUG Processing 201/585 atomic regions from SNP 60200 to 60801 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,229 DEBUG Processing 429/667 atomic regions from SNP 128650 to 129250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,261 DEBUG Processing 466/709 atomic regions from SNP 139581 to 140181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,315 DEBUG Processing 222/545 atomic regions from SNP 66369 to 66969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,342 DEBUG Processing 351/640 atomic regions from SNP 105041 to 105641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,381 DEBUG Processing 202/585 atomic regions from SNP 60501 to 61102 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,449 DEBUG Processing 430/667 atomic regions from SNP 128950 to 129550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,482 DEBUG Processing 467/709 atomic regions from SNP 139881 to 140481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,501 DEBUG Processing 223/545 atomic regions from SNP 66669 to 67269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,552 DEBUG Processing 352/640 atomic regions from SNP 105341 to 105941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,580 DEBUG Processing 203/585 atomic regions from SNP 60802 to 61403 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,672 DEBUG Processing 431/667 atomic regions from SNP 129250 to 129850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,698 DEBUG Processing 224/545 atomic regions from SNP 66969 to 67569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,703 DEBUG Processing 468/709 atomic regions from SNP 140181 to 140781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,762 DEBUG Processing 353/640 atomic regions from SNP 105641 to 106241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,812 DEBUG Processing 204/585 atomic regions from SNP 61103 to 61704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,885 DEBUG Processing 432/667 atomic regions from SNP 129550 to 130150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,896 DEBUG Processing 225/545 atomic regions from SNP 67269 to 67869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,944 DEBUG Processing 469/709 atomic regions from SNP 140481 to 141081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,969 DEBUG Processing 354/640 atomic regions from SNP 105941 to 106541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,016 DEBUG Processing 205/585 atomic regions from SNP 61404 to 62005 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,090 DEBUG Processing 226/545 atomic regions from SNP 67569 to 68169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,095 DEBUG Processing 433/667 atomic regions from SNP 129850 to 130450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,168 DEBUG Processing 470/709 atomic regions from SNP 140781 to 141381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,179 DEBUG Processing 355/640 atomic regions from SNP 106241 to 106841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,228 DEBUG Processing 206/585 atomic regions from SNP 61705 to 62306 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,280 DEBUG Processing 227/545 atomic regions from SNP 67869 to 68469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,310 DEBUG Processing 434/667 atomic regions from SNP 130150 to 130750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,386 DEBUG Processing 471/709 atomic regions from SNP 141081 to 141681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,392 DEBUG Processing 356/640 atomic regions from SNP 106541 to 107141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,430 DEBUG Processing 207/585 atomic regions from SNP 62006 to 62607 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,469 DEBUG Processing 228/545 atomic regions from SNP 68169 to 68769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,527 DEBUG Processing 435/667 atomic regions from SNP 130450 to 131050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,609 DEBUG Processing 472/709 atomic regions from SNP 141381 to 141981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,639 DEBUG Processing 208/585 atomic regions from SNP 62307 to 62908 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,642 DEBUG Processing 357/640 atomic regions from SNP 106841 to 107441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,664 DEBUG Processing 229/545 atomic regions from SNP 68469 to 69069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,743 DEBUG Processing 436/667 atomic regions from SNP 130750 to 131350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,828 DEBUG Processing 473/709 atomic regions from SNP 141681 to 142281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,843 DEBUG Processing 209/585 atomic regions from SNP 62608 to 63209 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,861 DEBUG Processing 230/545 atomic regions from SNP 68769 to 69369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,864 DEBUG Processing 358/640 atomic regions from SNP 107141 to 107741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,959 DEBUG Processing 437/667 atomic regions from SNP 131050 to 131650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,043 DEBUG Processing 474/709 atomic regions from SNP 141981 to 142581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,043 DEBUG Processing 210/585 atomic regions from SNP 62909 to 63510 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,053 DEBUG Processing 231/545 atomic regions from SNP 69069 to 69669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,079 DEBUG Processing 359/640 atomic regions from SNP 107441 to 108041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,204 DEBUG Processing 438/667 atomic regions from SNP 131350 to 131950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,246 DEBUG Processing 211/585 atomic regions from SNP 63210 to 63811 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,248 DEBUG Processing 232/545 atomic regions from SNP 69369 to 69969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,264 DEBUG Processing 475/709 atomic regions from SNP 142281 to 142881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,292 DEBUG Processing 360/640 atomic regions from SNP 107741 to 108341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,421 DEBUG Processing 439/667 atomic regions from SNP 131650 to 132250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,443 DEBUG Processing 233/545 atomic regions from SNP 69669 to 70269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,451 DEBUG Processing 212/585 atomic regions from SNP 63511 to 64112 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,489 DEBUG Processing 476/709 atomic regions from SNP 142581 to 143181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,508 DEBUG Processing 361/640 atomic regions from SNP 108041 to 108641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,631 DEBUG Processing 440/667 atomic regions from SNP 131950 to 132550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,633 DEBUG Processing 234/545 atomic regions from SNP 69969 to 70569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,650 DEBUG Processing 213/585 atomic regions from SNP 63812 to 64413 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,706 DEBUG Processing 477/709 atomic regions from SNP 142881 to 143481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,718 DEBUG Processing 362/640 atomic regions from SNP 108341 to 108941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,819 DEBUG Processing 235/545 atomic regions from SNP 70269 to 70869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,836 DEBUG Processing 441/667 atomic regions from SNP 132250 to 132850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,844 DEBUG Processing 214/585 atomic regions from SNP 64113 to 64714 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,917 DEBUG Processing 478/709 atomic regions from SNP 143181 to 143781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,928 DEBUG Processing 363/640 atomic regions from SNP 108641 to 109241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,007 DEBUG Processing 236/545 atomic regions from SNP 70569 to 71169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,040 DEBUG Processing 215/585 atomic regions from SNP 64414 to 65015 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,059 DEBUG Processing 442/667 atomic regions from SNP 132550 to 133150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,125 DEBUG Processing 479/709 atomic regions from SNP 143481 to 144081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,136 DEBUG Processing 364/640 atomic regions from SNP 108941 to 109541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,198 DEBUG Processing 237/545 atomic regions from SNP 70869 to 71469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,241 DEBUG Processing 216/585 atomic regions from SNP 64715 to 65316 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,307 DEBUG Processing 443/667 atomic regions from SNP 132850 to 133450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,334 DEBUG Processing 480/709 atomic regions from SNP 143781 to 144381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,339 DEBUG Processing 365/640 atomic regions from SNP 109241 to 109841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,390 DEBUG Processing 238/545 atomic regions from SNP 71169 to 71769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,453 DEBUG Processing 217/585 atomic regions from SNP 65016 to 65617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,534 DEBUG Processing 444/667 atomic regions from SNP 133150 to 133750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,544 DEBUG Processing 366/640 atomic regions from SNP 109541 to 110141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,572 DEBUG Processing 481/709 atomic regions from SNP 144081 to 144681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,574 DEBUG Processing 239/545 atomic regions from SNP 71469 to 72069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,653 DEBUG Processing 218/585 atomic regions from SNP 65317 to 65918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,744 DEBUG Processing 445/667 atomic regions from SNP 133450 to 134050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,751 DEBUG Processing 367/640 atomic regions from SNP 109841 to 110441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,759 DEBUG Processing 240/545 atomic regions from SNP 71769 to 72369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,800 DEBUG Processing 482/709 atomic regions from SNP 144381 to 144981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,850 DEBUG Processing 219/585 atomic regions from SNP 65618 to 66219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,949 DEBUG Processing 241/545 atomic regions from SNP 72069 to 72669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,959 DEBUG Processing 446/667 atomic regions from SNP 133750 to 134350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,964 DEBUG Processing 368/640 atomic regions from SNP 110141 to 110741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,010 DEBUG Processing 483/709 atomic regions from SNP 144681 to 145281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,050 DEBUG Processing 220/585 atomic regions from SNP 65919 to 66520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,140 DEBUG Processing 242/545 atomic regions from SNP 72369 to 72969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,178 DEBUG Processing 447/667 atomic regions from SNP 134050 to 134650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,178 DEBUG Processing 369/640 atomic regions from SNP 110441 to 111041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,236 DEBUG Processing 484/709 atomic regions from SNP 144981 to 145581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,248 DEBUG Processing 221/585 atomic regions from SNP 66220 to 66821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,334 DEBUG Processing 243/545 atomic regions from SNP 72669 to 73269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,393 DEBUG Processing 370/640 atomic regions from SNP 110741 to 111341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,395 DEBUG Processing 448/667 atomic regions from SNP 134350 to 134950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,438 DEBUG Processing 222/585 atomic regions from SNP 66521 to 67122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,443 DEBUG Processing 485/709 atomic regions from SNP 145281 to 145881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,527 DEBUG Processing 244/545 atomic regions from SNP 72969 to 73569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,607 DEBUG Processing 371/640 atomic regions from SNP 111041 to 111641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,611 DEBUG Processing 449/667 atomic regions from SNP 134650 to 135250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,632 DEBUG Processing 223/585 atomic regions from SNP 66822 to 67423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,656 DEBUG Processing 486/709 atomic regions from SNP 145581 to 146181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,713 DEBUG Processing 245/545 atomic regions from SNP 73269 to 73869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,817 DEBUG Processing 372/640 atomic regions from SNP 111341 to 111941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,825 DEBUG Processing 450/667 atomic regions from SNP 134950 to 135550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,832 DEBUG Processing 224/585 atomic regions from SNP 67123 to 67724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,891 DEBUG Processing 487/709 atomic regions from SNP 145881 to 146481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,904 DEBUG Processing 246/545 atomic regions from SNP 73569 to 74169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,027 DEBUG Processing 373/640 atomic regions from SNP 111641 to 112241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,033 DEBUG Processing 225/585 atomic regions from SNP 67424 to 68025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,039 DEBUG Processing 451/667 atomic regions from SNP 135250 to 135850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,101 DEBUG Processing 247/545 atomic regions from SNP 73869 to 74469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,123 DEBUG Processing 488/709 atomic regions from SNP 146181 to 146781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,232 DEBUG Processing 226/585 atomic regions from SNP 67725 to 68326 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,236 DEBUG Processing 374/640 atomic regions from SNP 111941 to 112541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,252 DEBUG Processing 452/667 atomic regions from SNP 135550 to 136150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,297 DEBUG Processing 248/545 atomic regions from SNP 74169 to 74769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,345 DEBUG Processing 489/709 atomic regions from SNP 146481 to 147081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,431 DEBUG Processing 227/585 atomic regions from SNP 68026 to 68627 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,453 DEBUG Processing 375/640 atomic regions from SNP 112241 to 112841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,471 DEBUG Processing 453/667 atomic regions from SNP 135850 to 136450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,490 DEBUG Processing 249/545 atomic regions from SNP 74469 to 75069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,566 DEBUG Processing 490/709 atomic regions from SNP 146781 to 147381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,639 DEBUG Processing 228/585 atomic regions from SNP 68327 to 68928 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,671 DEBUG Processing 376/640 atomic regions from SNP 112541 to 113141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,682 DEBUG Processing 250/545 atomic regions from SNP 74769 to 75369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,700 DEBUG Processing 454/667 atomic regions from SNP 136150 to 136750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,779 DEBUG Processing 491/709 atomic regions from SNP 147081 to 147681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,847 DEBUG Processing 229/585 atomic regions from SNP 68628 to 69229 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,883 DEBUG Processing 251/545 atomic regions from SNP 75069 to 75669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,892 DEBUG Processing 377/640 atomic regions from SNP 112841 to 113441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,943 DEBUG Processing 455/667 atomic regions from SNP 136450 to 137050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,989 DEBUG Processing 492/709 atomic regions from SNP 147381 to 147981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,052 DEBUG Processing 230/585 atomic regions from SNP 68929 to 69530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,083 DEBUG Processing 252/545 atomic regions from SNP 75369 to 75969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,107 DEBUG Processing 378/640 atomic regions from SNP 113141 to 113741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,161 DEBUG Processing 456/667 atomic regions from SNP 136750 to 137350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,206 DEBUG Processing 493/709 atomic regions from SNP 147681 to 148281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,254 DEBUG Processing 231/585 atomic regions from SNP 69230 to 69831 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,278 DEBUG Processing 253/545 atomic regions from SNP 75669 to 76269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,325 DEBUG Processing 379/640 atomic regions from SNP 113441 to 114041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,384 DEBUG Processing 457/667 atomic regions from SNP 137050 to 137650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,426 DEBUG Processing 494/709 atomic regions from SNP 147981 to 148581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,458 DEBUG Processing 232/585 atomic regions from SNP 69531 to 70132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,476 DEBUG Processing 254/545 atomic regions from SNP 75969 to 76569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,538 DEBUG Processing 380/640 atomic regions from SNP 113741 to 114341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,599 DEBUG Processing 458/667 atomic regions from SNP 137350 to 137950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,653 DEBUG Processing 495/709 atomic regions from SNP 148281 to 148881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,665 DEBUG Processing 233/585 atomic regions from SNP 69832 to 70433 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,678 DEBUG Processing 255/545 atomic regions from SNP 76269 to 76869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,751 DEBUG Processing 381/640 atomic regions from SNP 114041 to 114641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,811 DEBUG Processing 459/667 atomic regions from SNP 137650 to 138250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,870 DEBUG Processing 496/709 atomic regions from SNP 148581 to 149181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,871 DEBUG Processing 234/585 atomic regions from SNP 70133 to 70734 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,875 DEBUG Processing 256/545 atomic regions from SNP 76569 to 77169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,970 DEBUG Processing 382/640 atomic regions from SNP 114341 to 114941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,028 DEBUG Processing 460/667 atomic regions from SNP 137950 to 138550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,069 DEBUG Processing 257/545 atomic regions from SNP 76869 to 77469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,073 DEBUG Processing 235/585 atomic regions from SNP 70434 to 71035 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,111 DEBUG Processing 497/709 atomic regions from SNP 148881 to 149481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,184 DEBUG Processing 383/640 atomic regions from SNP 114641 to 115241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,244 DEBUG Processing 461/667 atomic regions from SNP 138250 to 138850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,270 DEBUG Processing 258/545 atomic regions from SNP 77169 to 77769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,281 DEBUG Processing 236/585 atomic regions from SNP 70735 to 71336 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,342 DEBUG Processing 498/709 atomic regions from SNP 149181 to 149781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,397 DEBUG Processing 384/640 atomic regions from SNP 114941 to 115541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,464 DEBUG Processing 462/667 atomic regions from SNP 138550 to 139150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,472 DEBUG Processing 259/545 atomic regions from SNP 77469 to 78069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,494 DEBUG Processing 237/585 atomic regions from SNP 71036 to 71637 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,589 DEBUG Processing 499/709 atomic regions from SNP 149481 to 150081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,617 DEBUG Processing 385/640 atomic regions from SNP 115241 to 115841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,672 DEBUG Processing 260/545 atomic regions from SNP 77769 to 78369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,686 DEBUG Processing 463/667 atomic regions from SNP 138850 to 139450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,704 DEBUG Processing 238/585 atomic regions from SNP 71337 to 71938 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,824 DEBUG Processing 500/709 atomic regions from SNP 149781 to 150381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,834 DEBUG Processing 386/640 atomic regions from SNP 115541 to 116141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,867 DEBUG Processing 261/545 atomic regions from SNP 78069 to 78669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,908 DEBUG Processing 464/667 atomic regions from SNP 139150 to 139750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,910 DEBUG Processing 239/585 atomic regions from SNP 71638 to 72239 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,051 DEBUG Processing 387/640 atomic regions from SNP 115841 to 116441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,070 DEBUG Processing 501/709 atomic regions from SNP 150081 to 150681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,076 DEBUG Processing 262/545 atomic regions from SNP 78369 to 78969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,125 DEBUG Processing 240/585 atomic regions from SNP 71939 to 72540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,131 DEBUG Processing 465/667 atomic regions from SNP 139450 to 140050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,265 DEBUG Processing 388/640 atomic regions from SNP 116141 to 116741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,279 DEBUG Processing 263/545 atomic regions from SNP 78669 to 79269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,304 DEBUG Processing 502/709 atomic regions from SNP 150381 to 150981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,334 DEBUG Processing 241/585 atomic regions from SNP 72240 to 72841 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,353 DEBUG Processing 466/667 atomic regions from SNP 139750 to 140350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,483 DEBUG Processing 264/545 atomic regions from SNP 78969 to 79569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,493 DEBUG Processing 389/640 atomic regions from SNP 116441 to 117041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,527 DEBUG Processing 503/709 atomic regions from SNP 150681 to 151281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,549 DEBUG Processing 242/585 atomic regions from SNP 72541 to 73142 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,572 DEBUG Processing 467/667 atomic regions from SNP 140050 to 140650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,685 DEBUG Processing 265/545 atomic regions from SNP 79269 to 79869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,733 DEBUG Processing 390/640 atomic regions from SNP 116741 to 117341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,753 DEBUG Processing 504/709 atomic regions from SNP 150981 to 151581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,760 DEBUG Processing 243/585 atomic regions from SNP 72842 to 73443 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,793 DEBUG Processing 468/667 atomic regions from SNP 140350 to 140950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,876 DEBUG Processing 266/545 atomic regions from SNP 79569 to 80169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,966 DEBUG Processing 244/585 atomic regions from SNP 73143 to 73744 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,968 DEBUG Processing 391/640 atomic regions from SNP 117041 to 117641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,972 DEBUG Processing 505/709 atomic regions from SNP 151281 to 151881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,018 DEBUG Processing 469/667 atomic regions from SNP 140650 to 141250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,071 DEBUG Processing 267/545 atomic regions from SNP 79869 to 80469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,178 DEBUG Processing 245/585 atomic regions from SNP 73444 to 74045 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,198 DEBUG Processing 506/709 atomic regions from SNP 151581 to 152181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,218 DEBUG Processing 392/640 atomic regions from SNP 117341 to 117941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,244 DEBUG Processing 470/667 atomic regions from SNP 140950 to 141550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,275 DEBUG Processing 268/545 atomic regions from SNP 80169 to 80769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,392 DEBUG Processing 246/585 atomic regions from SNP 73745 to 74346 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,429 DEBUG Processing 507/709 atomic regions from SNP 151881 to 152481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,456 DEBUG Processing 393/640 atomic regions from SNP 117641 to 118241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,465 DEBUG Processing 471/667 atomic regions from SNP 141250 to 141850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,486 DEBUG Processing 269/545 atomic regions from SNP 80469 to 81069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,603 DEBUG Processing 247/585 atomic regions from SNP 74046 to 74647 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,658 DEBUG Processing 508/709 atomic regions from SNP 152181 to 152781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,677 DEBUG Processing 394/640 atomic regions from SNP 117941 to 118541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,689 DEBUG Processing 472/667 atomic regions from SNP 141550 to 142150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,696 DEBUG Processing 270/545 atomic regions from SNP 80769 to 81369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,805 DEBUG Processing 248/585 atomic regions from SNP 74347 to 74948 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,879 DEBUG Processing 509/709 atomic regions from SNP 152481 to 153081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,895 DEBUG Processing 395/640 atomic regions from SNP 118241 to 118841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,904 DEBUG Processing 271/545 atomic regions from SNP 81069 to 81669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,914 DEBUG Processing 473/667 atomic regions from SNP 141850 to 142450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,011 DEBUG Processing 249/585 atomic regions from SNP 74648 to 75249 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,099 DEBUG Processing 510/709 atomic regions from SNP 152781 to 153381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,103 DEBUG Processing 272/545 atomic regions from SNP 81369 to 81969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,113 DEBUG Processing 396/640 atomic regions from SNP 118541 to 119141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,136 DEBUG Processing 474/667 atomic regions from SNP 142150 to 142750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,220 DEBUG Processing 250/585 atomic regions from SNP 74949 to 75550 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,296 DEBUG Processing 273/545 atomic regions from SNP 81669 to 82269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,316 DEBUG Processing 511/709 atomic regions from SNP 153081 to 153681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,333 DEBUG Processing 397/640 atomic regions from SNP 118841 to 119441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,362 DEBUG Processing 475/667 atomic regions from SNP 142450 to 143050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,435 DEBUG Processing 251/585 atomic regions from SNP 75250 to 75851 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,497 DEBUG Processing 274/545 atomic regions from SNP 81969 to 82569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,536 DEBUG Processing 512/709 atomic regions from SNP 153381 to 153981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,553 DEBUG Processing 398/640 atomic regions from SNP 119141 to 119741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,586 DEBUG Processing 476/667 atomic regions from SNP 142750 to 143350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,649 DEBUG Processing 252/585 atomic regions from SNP 75551 to 76152 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,707 DEBUG Processing 275/545 atomic regions from SNP 82269 to 82869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,761 DEBUG Processing 513/709 atomic regions from SNP 153681 to 154281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,771 DEBUG Processing 399/640 atomic regions from SNP 119441 to 120041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,810 DEBUG Processing 477/667 atomic regions from SNP 143050 to 143650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,854 DEBUG Processing 253/585 atomic regions from SNP 75852 to 76453 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,914 DEBUG Processing 276/545 atomic regions from SNP 82569 to 83169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,984 DEBUG Processing 400/640 atomic regions from SNP 119741 to 120341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,987 DEBUG Processing 514/709 atomic regions from SNP 153981 to 154581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,028 DEBUG Processing 478/667 atomic regions from SNP 143350 to 143950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,062 DEBUG Processing 254/585 atomic regions from SNP 76153 to 76754 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,115 DEBUG Processing 277/545 atomic regions from SNP 82869 to 83469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,198 DEBUG Processing 401/640 atomic regions from SNP 120041 to 120641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,220 DEBUG Processing 515/709 atomic regions from SNP 154281 to 154881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,254 DEBUG Processing 479/667 atomic regions from SNP 143650 to 144250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,274 DEBUG Processing 255/585 atomic regions from SNP 76454 to 77055 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,311 DEBUG Processing 278/545 atomic regions from SNP 83169 to 83769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,412 DEBUG Processing 402/640 atomic regions from SNP 120341 to 120941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,448 DEBUG Processing 516/709 atomic regions from SNP 154581 to 155181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,472 DEBUG Processing 480/667 atomic regions from SNP 143950 to 144550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,493 DEBUG Processing 256/585 atomic regions from SNP 76755 to 77356 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,522 DEBUG Processing 279/545 atomic regions from SNP 83469 to 84069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,621 DEBUG Processing 403/640 atomic regions from SNP 120641 to 121241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,672 DEBUG Processing 517/709 atomic regions from SNP 154881 to 155481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,692 DEBUG Processing 481/667 atomic regions from SNP 144250 to 144850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,706 DEBUG Processing 257/585 atomic regions from SNP 77056 to 77657 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,728 DEBUG Processing 280/545 atomic regions from SNP 83769 to 84369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,843 DEBUG Processing 404/640 atomic regions from SNP 120941 to 121541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,898 DEBUG Processing 518/709 atomic regions from SNP 155181 to 155781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,905 DEBUG Processing 482/667 atomic regions from SNP 144550 to 145150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,920 DEBUG Processing 258/585 atomic regions from SNP 77357 to 77958 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,931 DEBUG Processing 281/545 atomic regions from SNP 84069 to 84669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,057 DEBUG Processing 405/640 atomic regions from SNP 121241 to 121841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,115 DEBUG Processing 483/667 atomic regions from SNP 144850 to 145450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,125 DEBUG Processing 519/709 atomic regions from SNP 155481 to 156081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,135 DEBUG Processing 259/585 atomic regions from SNP 77658 to 78259 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,138 DEBUG Processing 282/545 atomic regions from SNP 84369 to 84969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,276 DEBUG Processing 406/640 atomic regions from SNP 121541 to 122141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,340 DEBUG Processing 484/667 atomic regions from SNP 145150 to 145750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,347 DEBUG Processing 283/545 atomic regions from SNP 84669 to 85269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,348 DEBUG Processing 260/585 atomic regions from SNP 77959 to 78560 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,367 DEBUG Processing 520/709 atomic regions from SNP 155781 to 156381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,493 DEBUG Processing 407/640 atomic regions from SNP 121841 to 122441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,548 DEBUG Processing 284/545 atomic regions from SNP 84969 to 85569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,555 DEBUG Processing 261/585 atomic regions from SNP 78260 to 78861 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,556 DEBUG Processing 485/667 atomic regions from SNP 145450 to 146050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,588 DEBUG Processing 521/709 atomic regions from SNP 156081 to 156681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,696 DEBUG Processing 408/640 atomic regions from SNP 122141 to 122741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,751 DEBUG Processing 285/545 atomic regions from SNP 85269 to 85869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,765 DEBUG Processing 262/585 atomic regions from SNP 78561 to 79162 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,770 DEBUG Processing 486/667 atomic regions from SNP 145750 to 146350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,812 DEBUG Processing 522/709 atomic regions from SNP 156381 to 156981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,900 DEBUG Processing 409/640 atomic regions from SNP 122441 to 123041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,947 DEBUG Processing 286/545 atomic regions from SNP 85569 to 86169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,973 DEBUG Processing 263/585 atomic regions from SNP 78862 to 79463 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,986 DEBUG Processing 487/667 atomic regions from SNP 146050 to 146650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,042 DEBUG Processing 523/709 atomic regions from SNP 156681 to 157281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,101 DEBUG Processing 410/640 atomic regions from SNP 122741 to 123341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,141 DEBUG Processing 287/545 atomic regions from SNP 85869 to 86469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,176 DEBUG Processing 264/585 atomic regions from SNP 79163 to 79764 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,189 DEBUG Processing 488/667 atomic regions from SNP 146350 to 146950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,265 DEBUG Processing 524/709 atomic regions from SNP 156981 to 157581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,307 DEBUG Processing 411/640 atomic regions from SNP 123041 to 123641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,336 DEBUG Processing 288/545 atomic regions from SNP 86169 to 86769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,377 DEBUG Processing 265/585 atomic regions from SNP 79464 to 80065 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,385 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:51:25,393 DEBUG Processing 489/667 atomic regions from SNP 146650 to 147250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,485 DEBUG Processing 525/709 atomic regions from SNP 157281 to 157881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,532 DEBUG Processing 412/640 atomic regions from SNP 123341 to 123941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,543 DEBUG Processing 289/545 atomic regions from SNP 86469 to 87069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,583 DEBUG Processing 266/585 atomic regions from SNP 79765 to 80366 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,598 DEBUG Processing 490/667 atomic regions from SNP 146950 to 147550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,713 DEBUG Processing 526/709 atomic regions from SNP 157581 to 158181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,757 DEBUG Processing 290/545 atomic regions from SNP 86769 to 87369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,766 DEBUG Processing 413/640 atomic regions from SNP 123641 to 124241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,801 DEBUG Processing 267/585 atomic regions from SNP 80066 to 80667 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,821 DEBUG Processing 491/667 atomic regions from SNP 147250 to 147850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,942 DEBUG Processing 527/709 atomic regions from SNP 157881 to 158481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,971 DEBUG Processing 291/545 atomic regions from SNP 87069 to 87669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,992 DEBUG Processing 414/640 atomic regions from SNP 123941 to 124541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,025 DEBUG Processing 268/585 atomic regions from SNP 80367 to 80968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,042 DEBUG Processing 492/667 atomic regions from SNP 147550 to 148150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,164 DEBUG Processing 528/709 atomic regions from SNP 158181 to 158781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,180 DEBUG Processing 292/545 atomic regions from SNP 87369 to 87969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,219 DEBUG Processing 415/640 atomic regions from SNP 124241 to 124841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,243 DEBUG Processing 269/585 atomic regions from SNP 80668 to 81269 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,254 DEBUG Processing 493/667 atomic regions from SNP 147850 to 148450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,384 DEBUG Processing 293/545 atomic regions from SNP 87669 to 88269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,387 DEBUG Processing 529/709 atomic regions from SNP 158481 to 159081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,442 DEBUG Processing 416/640 atomic regions from SNP 124541 to 125141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,458 DEBUG Processing 270/585 atomic regions from SNP 80969 to 81570 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,473 DEBUG Processing 494/667 atomic regions from SNP 148150 to 148750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,583 DEBUG Processing 294/545 atomic regions from SNP 87969 to 88569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,609 DEBUG Processing 530/709 atomic regions from SNP 158781 to 159381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,653 DEBUG Processing 417/640 atomic regions from SNP 124841 to 125441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,670 DEBUG Processing 271/585 atomic regions from SNP 81270 to 81871 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,694 DEBUG Processing 495/667 atomic regions from SNP 148450 to 149050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,782 DEBUG Processing 295/545 atomic regions from SNP 88269 to 88869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,831 DEBUG Processing 531/709 atomic regions from SNP 159081 to 159681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,856 DEBUG Processing 418/640 atomic regions from SNP 125141 to 125741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,877 DEBUG Processing 272/585 atomic regions from SNP 81571 to 82172 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,898 DEBUG Processing 496/667 atomic regions from SNP 148750 to 149350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,976 DEBUG Processing 296/545 atomic regions from SNP 88569 to 89169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,054 DEBUG Processing 419/640 atomic regions from SNP 125441 to 126041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,055 DEBUG Processing 532/709 atomic regions from SNP 159381 to 159981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,087 DEBUG Processing 273/585 atomic regions from SNP 81872 to 82473 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,108 DEBUG Processing 497/667 atomic regions from SNP 149050 to 149650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,167 DEBUG Processing 297/545 atomic regions from SNP 88869 to 89469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,249 DEBUG Processing 420/640 atomic regions from SNP 125741 to 126341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,273 DEBUG Processing 533/709 atomic regions from SNP 159681 to 160281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,292 DEBUG Processing 274/585 atomic regions from SNP 82173 to 82774 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,311 DEBUG Processing 498/667 atomic regions from SNP 149350 to 149950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,364 DEBUG Processing 298/545 atomic regions from SNP 89169 to 89769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,444 DEBUG Processing 421/640 atomic regions from SNP 126041 to 126641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,488 DEBUG Processing 534/709 atomic regions from SNP 159981 to 160581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,496 DEBUG Processing 275/585 atomic regions from SNP 82474 to 83075 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,514 DEBUG Processing 499/667 atomic regions from SNP 149650 to 150250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,568 DEBUG Processing 299/545 atomic regions from SNP 89469 to 90069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,642 DEBUG Processing 422/640 atomic regions from SNP 126341 to 126941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,696 DEBUG Processing 276/585 atomic regions from SNP 82775 to 83376 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,704 DEBUG Processing 535/709 atomic regions from SNP 160281 to 160881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,718 DEBUG Processing 500/667 atomic regions from SNP 149950 to 150550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,771 DEBUG Processing 300/545 atomic regions from SNP 89769 to 90369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,845 DEBUG Processing 423/640 atomic regions from SNP 126641 to 127241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,899 DEBUG Processing 277/585 atomic regions from SNP 83076 to 83677 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,922 DEBUG Processing 501/667 atomic regions from SNP 150250 to 150850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,924 DEBUG Processing 536/709 atomic regions from SNP 160581 to 161181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,970 DEBUG Processing 301/545 atomic regions from SNP 90069 to 90669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,047 DEBUG Processing 424/640 atomic regions from SNP 126941 to 127541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,112 DEBUG Processing 278/585 atomic regions from SNP 83377 to 83978 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,130 DEBUG Processing 502/667 atomic regions from SNP 150550 to 151150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,167 DEBUG Processing 537/709 atomic regions from SNP 160881 to 161481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,170 DEBUG Processing 302/545 atomic regions from SNP 90369 to 90969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,245 DEBUG Processing 425/640 atomic regions from SNP 127241 to 127841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,326 DEBUG Processing 279/585 atomic regions from SNP 83678 to 84279 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,343 DEBUG Processing 503/667 atomic regions from SNP 150850 to 151450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,378 DEBUG Processing 303/545 atomic regions from SNP 90669 to 91269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,416 DEBUG Processing 538/709 atomic regions from SNP 161181 to 161781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,448 DEBUG Processing 426/640 atomic regions from SNP 127541 to 128141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,536 DEBUG Processing 280/585 atomic regions from SNP 83979 to 84580 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,572 DEBUG Processing 504/667 atomic regions from SNP 151150 to 151750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,587 DEBUG Processing 304/545 atomic regions from SNP 90969 to 91569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,647 DEBUG Processing 539/709 atomic regions from SNP 161481 to 162081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,648 DEBUG Processing 427/640 atomic regions from SNP 127841 to 128441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,747 DEBUG Processing 281/585 atomic regions from SNP 84280 to 84881 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,800 DEBUG Processing 305/545 atomic regions from SNP 91269 to 91869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,801 DEBUG Processing 505/667 atomic regions from SNP 151450 to 152050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,854 DEBUG Processing 428/640 atomic regions from SNP 128141 to 128741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,877 DEBUG Processing 540/709 atomic regions from SNP 161781 to 162381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,944 DEBUG Processing 282/585 atomic regions from SNP 84581 to 85182 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,001 DEBUG Processing 306/545 atomic regions from SNP 91569 to 92169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,019 DEBUG Processing 506/667 atomic regions from SNP 151750 to 152350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,065 DEBUG Processing 429/640 atomic regions from SNP 128441 to 129041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,108 DEBUG Processing 541/709 atomic regions from SNP 162081 to 162681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,147 DEBUG Processing 283/585 atomic regions from SNP 84882 to 85483 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,203 DEBUG Processing 307/545 atomic regions from SNP 91869 to 92469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,215 DEBUG Processing 507/667 atomic regions from SNP 152050 to 152650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,270 DEBUG Processing 430/640 atomic regions from SNP 128741 to 129341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,359 DEBUG Processing 542/709 atomic regions from SNP 162381 to 162981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,364 DEBUG Processing 284/585 atomic regions from SNP 85183 to 85784 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,422 DEBUG Processing 508/667 atomic regions from SNP 152350 to 152950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,429 DEBUG Processing 308/545 atomic regions from SNP 92169 to 92769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,473 DEBUG Processing 431/640 atomic regions from SNP 129041 to 129641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,585 DEBUG Processing 285/585 atomic regions from SNP 85484 to 86085 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,602 DEBUG Processing 543/709 atomic regions from SNP 162681 to 163281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,636 DEBUG Processing 309/545 atomic regions from SNP 92469 to 93069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,649 DEBUG Processing 509/667 atomic regions from SNP 152650 to 153250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,683 DEBUG Processing 432/640 atomic regions from SNP 129341 to 129941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,800 DEBUG Processing 286/585 atomic regions from SNP 85785 to 86386 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,841 DEBUG Processing 544/709 atomic regions from SNP 162981 to 163581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,843 DEBUG Processing 310/545 atomic regions from SNP 92769 to 93369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,874 DEBUG Processing 510/667 atomic regions from SNP 152950 to 153550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,926 DEBUG Processing 433/640 atomic regions from SNP 129641 to 130241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,014 DEBUG Processing 287/585 atomic regions from SNP 86086 to 86687 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,050 DEBUG Processing 311/545 atomic regions from SNP 93069 to 93669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,084 DEBUG Processing 511/667 atomic regions from SNP 153250 to 153850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,093 DEBUG Processing 545/709 atomic regions from SNP 163281 to 163881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,149 DEBUG Processing 434/640 atomic regions from SNP 129941 to 130541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,224 DEBUG Processing 288/585 atomic regions from SNP 86387 to 86988 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,260 DEBUG Processing 312/545 atomic regions from SNP 93369 to 93969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,293 DEBUG Processing 512/667 atomic regions from SNP 153550 to 154150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,320 DEBUG Processing 546/709 atomic regions from SNP 163581 to 164181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,354 DEBUG Processing 435/640 atomic regions from SNP 130241 to 130841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,433 DEBUG Processing 289/585 atomic regions from SNP 86688 to 87289 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,461 DEBUG Processing 313/545 atomic regions from SNP 93669 to 94269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,500 DEBUG Processing 513/667 atomic regions from SNP 153850 to 154450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,554 DEBUG Processing 547/709 atomic regions from SNP 163881 to 164481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,554 DEBUG Processing 436/640 atomic regions from SNP 130541 to 131141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,640 DEBUG Processing 290/585 atomic regions from SNP 86989 to 87590 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,660 DEBUG Processing 314/545 atomic regions from SNP 93969 to 94569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,705 DEBUG Processing 514/667 atomic regions from SNP 154150 to 154750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,770 DEBUG Processing 437/640 atomic regions from SNP 130841 to 131441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,779 DEBUG Processing 548/709 atomic regions from SNP 164181 to 164781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,843 DEBUG Processing 291/585 atomic regions from SNP 87290 to 87891 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,860 DEBUG Processing 315/545 atomic regions from SNP 94269 to 94869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,912 DEBUG Processing 515/667 atomic regions from SNP 154450 to 155050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,999 DEBUG Processing 438/640 atomic regions from SNP 131141 to 131741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,018 DEBUG Processing 549/709 atomic regions from SNP 164481 to 165081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,052 DEBUG Processing 292/585 atomic regions from SNP 87591 to 88192 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,062 DEBUG Processing 316/545 atomic regions from SNP 94569 to 95169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,120 DEBUG Processing 516/667 atomic regions from SNP 154750 to 155350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,229 DEBUG Processing 439/640 atomic regions from SNP 131441 to 132041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,250 DEBUG Processing 550/709 atomic regions from SNP 164781 to 165381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,260 DEBUG Processing 293/585 atomic regions from SNP 87892 to 88493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,262 DEBUG Processing 317/545 atomic regions from SNP 94869 to 95469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,331 DEBUG Processing 517/667 atomic regions from SNP 155050 to 155650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,437 DEBUG Processing 440/640 atomic regions from SNP 131741 to 132341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,463 DEBUG Processing 318/545 atomic regions from SNP 95169 to 95769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,466 DEBUG Processing 294/585 atomic regions from SNP 88193 to 88794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,473 DEBUG Processing 551/709 atomic regions from SNP 165081 to 165681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,543 DEBUG Processing 518/667 atomic regions from SNP 155350 to 155950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,650 DEBUG Processing 441/640 atomic regions from SNP 132041 to 132641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,663 DEBUG Processing 319/545 atomic regions from SNP 95469 to 96069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,674 DEBUG Processing 295/585 atomic regions from SNP 88494 to 89094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,696 DEBUG Processing 552/709 atomic regions from SNP 165381 to 165981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,752 DEBUG Processing 519/667 atomic regions from SNP 155650 to 156250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,866 DEBUG Processing 320/545 atomic regions from SNP 95769 to 96369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,870 DEBUG Processing 442/640 atomic regions from SNP 132341 to 132941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,883 DEBUG Processing 296/585 atomic regions from SNP 88794 to 89394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,919 DEBUG Processing 553/709 atomic regions from SNP 165681 to 166281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,961 DEBUG Processing 520/667 atomic regions from SNP 155950 to 156550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,073 DEBUG Processing 321/545 atomic regions from SNP 96069 to 96669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,087 DEBUG Processing 443/640 atomic regions from SNP 132641 to 133241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,096 DEBUG Processing 297/585 atomic regions from SNP 89094 to 89694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,156 DEBUG Processing 554/709 atomic regions from SNP 165981 to 166581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,176 DEBUG Processing 521/667 atomic regions from SNP 156250 to 156850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,275 DEBUG Processing 322/545 atomic regions from SNP 96369 to 96969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,307 DEBUG Processing 298/585 atomic regions from SNP 89394 to 89994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,310 DEBUG Processing 444/640 atomic regions from SNP 132941 to 133541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,388 DEBUG Processing 522/667 atomic regions from SNP 156550 to 157150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,397 DEBUG Processing 555/709 atomic regions from SNP 166281 to 166881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,485 DEBUG Processing 323/545 atomic regions from SNP 96669 to 97269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,516 DEBUG Processing 299/585 atomic regions from SNP 89694 to 90294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,522 DEBUG Processing 445/640 atomic regions from SNP 133241 to 133841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,618 DEBUG Processing 523/667 atomic regions from SNP 156850 to 157450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,638 DEBUG Processing 556/709 atomic regions from SNP 166581 to 167181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,683 DEBUG Processing 324/545 atomic regions from SNP 96969 to 97569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,721 DEBUG Processing 300/585 atomic regions from SNP 89994 to 90594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,726 DEBUG Processing 446/640 atomic regions from SNP 133541 to 134141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,832 DEBUG Processing 524/667 atomic regions from SNP 157150 to 157750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,882 DEBUG Processing 557/709 atomic regions from SNP 166881 to 167481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,886 DEBUG Processing 325/545 atomic regions from SNP 97269 to 97869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,927 DEBUG Processing 301/585 atomic regions from SNP 90294 to 90894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,933 DEBUG Processing 447/640 atomic regions from SNP 133841 to 134441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,039 DEBUG Processing 525/667 atomic regions from SNP 157450 to 158050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,088 DEBUG Processing 326/545 atomic regions from SNP 97569 to 98169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,136 DEBUG Processing 302/585 atomic regions from SNP 90594 to 91194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,136 DEBUG Processing 558/709 atomic regions from SNP 167181 to 167781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,140 DEBUG Processing 448/640 atomic regions from SNP 134141 to 134741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,245 DEBUG Processing 526/667 atomic regions from SNP 157750 to 158350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,286 DEBUG Processing 327/545 atomic regions from SNP 97869 to 98469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,345 DEBUG Processing 449/640 atomic regions from SNP 134441 to 135041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,347 DEBUG Processing 303/585 atomic regions from SNP 90894 to 91494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,386 DEBUG Processing 559/709 atomic regions from SNP 167481 to 168081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,453 DEBUG Processing 527/667 atomic regions from SNP 158050 to 158650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,481 DEBUG Processing 328/545 atomic regions from SNP 98169 to 98769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,551 DEBUG Processing 450/640 atomic regions from SNP 134741 to 135341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,560 DEBUG Processing 304/585 atomic regions from SNP 91194 to 91794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,649 DEBUG Processing 560/709 atomic regions from SNP 167781 to 168381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,661 DEBUG Processing 528/667 atomic regions from SNP 158350 to 158950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,676 DEBUG Processing 329/545 atomic regions from SNP 98469 to 99069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,754 DEBUG Processing 451/640 atomic regions from SNP 135041 to 135641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,764 DEBUG Processing 305/585 atomic regions from SNP 91494 to 92094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,873 DEBUG Processing 529/667 atomic regions from SNP 158650 to 159250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,880 DEBUG Processing 330/545 atomic regions from SNP 98769 to 99369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,892 DEBUG Processing 561/709 atomic regions from SNP 168081 to 168681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,962 DEBUG Processing 452/640 atomic regions from SNP 135341 to 135941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,970 DEBUG Processing 306/585 atomic regions from SNP 91794 to 92394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,082 DEBUG Processing 331/545 atomic regions from SNP 99069 to 99669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,082 DEBUG Processing 530/667 atomic regions from SNP 158950 to 159550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,133 DEBUG Processing 562/709 atomic regions from SNP 168381 to 168981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,171 DEBUG Processing 453/640 atomic regions from SNP 135641 to 136241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,180 DEBUG Processing 307/585 atomic regions from SNP 92094 to 92694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,278 DEBUG Processing 332/545 atomic regions from SNP 99369 to 99969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,289 DEBUG Processing 531/667 atomic regions from SNP 159250 to 159850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,365 DEBUG Processing 563/709 atomic regions from SNP 168681 to 169281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,393 DEBUG Processing 308/585 atomic regions from SNP 92394 to 92994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,408 DEBUG Processing 454/640 atomic regions from SNP 135941 to 136541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,480 DEBUG Processing 333/545 atomic regions from SNP 99669 to 100269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,513 DEBUG Processing 532/667 atomic regions from SNP 159550 to 160150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,597 DEBUG Processing 564/709 atomic regions from SNP 168981 to 169581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,608 DEBUG Processing 309/585 atomic regions from SNP 92694 to 93294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,646 DEBUG Processing 455/640 atomic regions from SNP 136241 to 136841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,674 DEBUG Processing 334/545 atomic regions from SNP 99969 to 100569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,731 DEBUG Processing 533/667 atomic regions from SNP 159850 to 160450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,815 DEBUG Processing 310/585 atomic regions from SNP 92994 to 93594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,840 DEBUG Processing 565/709 atomic regions from SNP 169281 to 169881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,868 DEBUG Processing 456/640 atomic regions from SNP 136541 to 137141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,869 DEBUG Processing 335/545 atomic regions from SNP 100269 to 100869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,939 DEBUG Processing 534/667 atomic regions from SNP 160150 to 160750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,033 DEBUG Processing 311/585 atomic regions from SNP 93294 to 93894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,079 DEBUG Processing 336/545 atomic regions from SNP 100569 to 101169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,086 DEBUG Processing 457/640 atomic regions from SNP 136841 to 137441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,095 DEBUG Processing 566/709 atomic regions from SNP 169581 to 170181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,146 DEBUG Processing 535/667 atomic regions from SNP 160450 to 161050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,256 DEBUG Processing 312/585 atomic regions from SNP 93594 to 94194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,282 DEBUG Processing 337/545 atomic regions from SNP 100869 to 101469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,294 DEBUG Processing 458/640 atomic regions from SNP 137141 to 137741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,355 DEBUG Processing 536/667 atomic regions from SNP 160750 to 161350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,356 DEBUG Processing 567/709 atomic regions from SNP 169881 to 170481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,460 DEBUG Processing 313/585 atomic regions from SNP 93894 to 94494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,483 DEBUG Processing 338/545 atomic regions from SNP 101169 to 101769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,504 DEBUG Processing 459/640 atomic regions from SNP 137441 to 138041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,563 DEBUG Processing 537/667 atomic regions from SNP 161050 to 161650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,603 DEBUG Processing 568/709 atomic regions from SNP 170181 to 170781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,659 DEBUG Processing 314/585 atomic regions from SNP 94194 to 94794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,677 DEBUG Processing 339/545 atomic regions from SNP 101469 to 102069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,713 DEBUG Processing 460/640 atomic regions from SNP 137741 to 138341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,772 DEBUG Processing 538/667 atomic regions from SNP 161350 to 161950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,774 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:51:35,776 DEBUG chr17: Signal quantile: 0.993. signal threshold: 17. Best RMSEA: 0.027 2025-01-31 09:51:35,818 DEBUG Processing 569/709 atomic regions from SNP 170481 to 171081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,856 DEBUG Processing 315/585 atomic regions from SNP 94494 to 95094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,863 DEBUG Processing 340/545 atomic regions from SNP 101769 to 102369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,922 DEBUG Processing 461/640 atomic regions from SNP 138041 to 138641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,005 DEBUG Processing 539/667 atomic regions from SNP 161650 to 162250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,043 DEBUG Processing 570/709 atomic regions from SNP 170781 to 171381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,061 DEBUG Processing 316/585 atomic regions from SNP 94794 to 95394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,062 DEBUG Processing 341/545 atomic regions from SNP 102069 to 102669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,130 DEBUG Processing 462/640 atomic regions from SNP 138341 to 138941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,238 DEBUG Processing 540/667 atomic regions from SNP 161950 to 162550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,263 DEBUG Processing 342/545 atomic regions from SNP 102369 to 102969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,272 DEBUG Processing 571/709 atomic regions from SNP 171081 to 171681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,274 DEBUG Processing 317/585 atomic regions from SNP 95094 to 95694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,337 DEBUG Processing 463/640 atomic regions from SNP 138641 to 139241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,444 DEBUG Processing 541/667 atomic regions from SNP 162250 to 162850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,472 DEBUG Processing 343/545 atomic regions from SNP 102669 to 103269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,489 DEBUG Processing 318/585 atomic regions from SNP 95394 to 95994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,502 DEBUG Processing 572/709 atomic regions from SNP 171381 to 171981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,546 DEBUG Processing 464/640 atomic regions from SNP 138941 to 139541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,650 DEBUG Processing 542/667 atomic regions from SNP 162550 to 163150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,675 DEBUG Processing 344/545 atomic regions from SNP 102969 to 103569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,700 DEBUG Processing 319/585 atomic regions from SNP 95694 to 96294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,726 DEBUG Processing 573/709 atomic regions from SNP 171681 to 172281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,747 DEBUG Processing 465/640 atomic regions from SNP 139241 to 139841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,861 DEBUG Processing 543/667 atomic regions from SNP 162850 to 163450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,873 DEBUG Processing 345/545 atomic regions from SNP 103269 to 103869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,905 DEBUG Processing 320/585 atomic regions from SNP 95994 to 96594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,948 DEBUG Processing 574/709 atomic regions from SNP 171981 to 172581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,948 DEBUG Processing 466/640 atomic regions from SNP 139541 to 140141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,066 DEBUG Processing 346/545 atomic regions from SNP 103569 to 104169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,083 DEBUG Processing 544/667 atomic regions from SNP 163150 to 163750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,105 DEBUG Processing 321/585 atomic regions from SNP 96294 to 96894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,145 DEBUG Processing 467/640 atomic regions from SNP 139841 to 140441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,167 DEBUG Processing 575/709 atomic regions from SNP 172281 to 172881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,262 DEBUG Processing 347/545 atomic regions from SNP 103869 to 104469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,298 DEBUG Processing 545/667 atomic regions from SNP 163450 to 164050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,306 DEBUG Processing 322/585 atomic regions from SNP 96594 to 97194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,345 DEBUG Processing 468/640 atomic regions from SNP 140141 to 140741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,410 DEBUG Processing 576/709 atomic regions from SNP 172581 to 173181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,446 DEBUG chr17 total SNP count: 156020 2025-01-31 09:51:37,447 DEBUG chr17 length: 94987271 2025-01-31 09:51:37,447 DEBUG ----------------------------------------- 2025-01-31 09:51:37,447 INFO Processing SNPs in chr17 2025-01-31 09:51:37,460 DEBUG Processing 348/545 atomic regions from SNP 104169 to 104769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,508 DEBUG Processing 323/585 atomic regions from SNP 96894 to 97494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,510 DEBUG Processing 546/667 atomic regions from SNP 163750 to 164350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,544 DEBUG Processing 469/640 atomic regions from SNP 140441 to 141041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,602 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 156020)] 2025-01-31 09:51:37,647 DEBUG Processing 577/709 atomic regions from SNP 172881 to 173481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,658 DEBUG Processing 349/545 atomic regions from SNP 104469 to 105069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,708 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:37,710 DEBUG Processing 324/585 atomic regions from SNP 97194 to 97794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,716 DEBUG Processing 547/667 atomic regions from SNP 164050 to 164650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,749 DEBUG Processing 470/640 atomic regions from SNP 140741 to 141341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,855 DEBUG Processing 350/545 atomic regions from SNP 104769 to 105369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,890 DEBUG Processing 578/709 atomic regions from SNP 173181 to 173781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,917 DEBUG Processing 325/585 atomic regions from SNP 97494 to 98094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,924 DEBUG Processing 548/667 atomic regions from SNP 164350 to 164950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,952 DEBUG Processing 471/640 atomic regions from SNP 141041 to 141641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,050 DEBUG Processing 351/545 atomic regions from SNP 105069 to 105669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,115 DEBUG Processing 579/709 atomic regions from SNP 173481 to 174081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,122 DEBUG Processing 326/585 atomic regions from SNP 97794 to 98394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,134 DEBUG Processing 549/667 atomic regions from SNP 164650 to 165250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,156 DEBUG Processing 472/640 atomic regions from SNP 141341 to 141941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,244 DEBUG Processing 352/545 atomic regions from SNP 105369 to 105969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,325 DEBUG Processing 327/585 atomic regions from SNP 98094 to 98694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,342 DEBUG Processing 550/667 atomic regions from SNP 164950 to 165550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,343 DEBUG Processing 580/709 atomic regions from SNP 173781 to 174381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,362 DEBUG Processing 473/640 atomic regions from SNP 141641 to 142241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,441 DEBUG Processing 353/545 atomic regions from SNP 105669 to 106269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,532 DEBUG Processing 328/585 atomic regions from SNP 98394 to 98994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,560 DEBUG Processing 551/667 atomic regions from SNP 165250 to 165850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,575 DEBUG Processing 474/640 atomic regions from SNP 141941 to 142541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,584 DEBUG Processing 581/709 atomic regions from SNP 174081 to 174681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,635 DEBUG Processing 354/545 atomic regions from SNP 105969 to 106569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,738 DEBUG Processing 329/585 atomic regions from SNP 98694 to 99294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,770 DEBUG Processing 552/667 atomic regions from SNP 165550 to 166150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,781 DEBUG Processing 475/640 atomic regions from SNP 142241 to 142841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,813 DEBUG Processing 582/709 atomic regions from SNP 174381 to 174981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,829 DEBUG Processing 355/545 atomic regions from SNP 106269 to 106869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,942 DEBUG Processing 330/585 atomic regions from SNP 98994 to 99594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,978 DEBUG Processing 553/667 atomic regions from SNP 165850 to 166450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,987 DEBUG Processing 476/640 atomic regions from SNP 142541 to 143141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,019 DEBUG Processing 356/545 atomic regions from SNP 106569 to 107169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,051 DEBUG Processing 583/709 atomic regions from SNP 174681 to 175281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,147 DEBUG Processing 331/585 atomic regions from SNP 99294 to 99894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,190 DEBUG Processing 477/640 atomic regions from SNP 142841 to 143441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,195 DEBUG Processing 554/667 atomic regions from SNP 166150 to 166750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,216 DEBUG Processing 357/545 atomic regions from SNP 106869 to 107469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,291 DEBUG Processing 584/709 atomic regions from SNP 174981 to 175581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,351 DEBUG Processing 332/585 atomic regions from SNP 99594 to 100194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,392 DEBUG Processing 478/640 atomic regions from SNP 143141 to 143741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,418 DEBUG Processing 358/545 atomic regions from SNP 107169 to 107769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,430 DEBUG Processing 555/667 atomic regions from SNP 166450 to 167050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,527 DEBUG Processing 585/709 atomic regions from SNP 175281 to 175881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,549 DEBUG Processing 333/585 atomic regions from SNP 99894 to 100494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,593 DEBUG Processing 479/640 atomic regions from SNP 143441 to 144041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,618 DEBUG Processing 359/545 atomic regions from SNP 107469 to 108069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,633 DEBUG Processing 556/667 atomic regions from SNP 166750 to 167350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,756 DEBUG Processing 586/709 atomic regions from SNP 175581 to 176181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,756 DEBUG Processing 334/585 atomic regions from SNP 100194 to 100794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,793 DEBUG Processing 480/640 atomic regions from SNP 143741 to 144341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,820 DEBUG Processing 360/545 atomic regions from SNP 107769 to 108369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,835 DEBUG Processing 557/667 atomic regions from SNP 167050 to 167650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,964 DEBUG Processing 335/585 atomic regions from SNP 100494 to 101094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,991 DEBUG Processing 481/640 atomic regions from SNP 144041 to 144641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,001 DEBUG Processing 587/709 atomic regions from SNP 175881 to 176481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,020 DEBUG Processing 361/545 atomic regions from SNP 108069 to 108669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,037 DEBUG Processing 558/667 atomic regions from SNP 167350 to 167950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,174 DEBUG Processing 336/585 atomic regions from SNP 100794 to 101394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,191 DEBUG Processing 482/640 atomic regions from SNP 144341 to 144941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,219 DEBUG Processing 362/545 atomic regions from SNP 108369 to 108969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,240 DEBUG Processing 559/667 atomic regions from SNP 167650 to 168250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,251 DEBUG Processing 588/709 atomic regions from SNP 176181 to 176781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,380 DEBUG Processing 337/585 atomic regions from SNP 101094 to 101694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,388 DEBUG Processing 483/640 atomic regions from SNP 144641 to 145241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,417 DEBUG Processing 363/545 atomic regions from SNP 108669 to 109269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,444 DEBUG Processing 560/667 atomic regions from SNP 167950 to 168550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,508 DEBUG Processing 589/709 atomic regions from SNP 176481 to 177081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,579 DEBUG Processing 338/585 atomic regions from SNP 101394 to 101994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,586 DEBUG Processing 484/640 atomic regions from SNP 144941 to 145541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,608 DEBUG Processing 364/545 atomic regions from SNP 108969 to 109569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,672 DEBUG Processing 561/667 atomic regions from SNP 168250 to 168850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,747 DEBUG Processing 590/709 atomic regions from SNP 176781 to 177381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,781 DEBUG Processing 339/585 atomic regions from SNP 101694 to 102294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,784 DEBUG Processing 485/640 atomic regions from SNP 145241 to 145841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,800 DEBUG Processing 365/545 atomic regions from SNP 109269 to 109869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,872 DEBUG Processing 562/667 atomic regions from SNP 168550 to 169150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,970 DEBUG Processing 591/709 atomic regions from SNP 177081 to 177681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,985 DEBUG Processing 486/640 atomic regions from SNP 145541 to 146141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,993 DEBUG Processing 340/585 atomic regions from SNP 101994 to 102594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,999 DEBUG Processing 366/545 atomic regions from SNP 109569 to 110169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,079 DEBUG Processing 563/667 atomic regions from SNP 168850 to 169450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,187 DEBUG Processing 487/640 atomic regions from SNP 145841 to 146441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,204 DEBUG Processing 592/709 atomic regions from SNP 177381 to 177981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,208 DEBUG Processing 367/545 atomic regions from SNP 109869 to 110469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,208 DEBUG Processing 341/585 atomic regions from SNP 102294 to 102894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,278 DEBUG Processing 564/667 atomic regions from SNP 169150 to 169750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,388 DEBUG Processing 488/640 atomic regions from SNP 146141 to 146741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,409 DEBUG Processing 368/545 atomic regions from SNP 110169 to 110769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,417 DEBUG Processing 342/585 atomic regions from SNP 102594 to 103194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,449 DEBUG Processing 593/709 atomic regions from SNP 177681 to 178281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,476 DEBUG Processing 565/667 atomic regions from SNP 169450 to 170050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,590 DEBUG Processing 489/640 atomic regions from SNP 146441 to 147041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,612 DEBUG Processing 369/545 atomic regions from SNP 110469 to 111069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,626 DEBUG Processing 343/585 atomic regions from SNP 102894 to 103494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,675 DEBUG Processing 566/667 atomic regions from SNP 169750 to 170350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,701 DEBUG Processing 594/709 atomic regions from SNP 177981 to 178581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,789 DEBUG Processing 490/640 atomic regions from SNP 146741 to 147341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,811 DEBUG Processing 370/545 atomic regions from SNP 110769 to 111369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,830 DEBUG Processing 344/585 atomic regions from SNP 103194 to 103794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,878 DEBUG Processing 567/667 atomic regions from SNP 170050 to 170650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,920 DEBUG Processing 595/709 atomic regions from SNP 178281 to 178881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,988 DEBUG Processing 491/640 atomic regions from SNP 147041 to 147641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,008 DEBUG Processing 371/545 atomic regions from SNP 111069 to 111669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,035 DEBUG Processing 345/585 atomic regions from SNP 103494 to 104094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,079 DEBUG Processing 568/667 atomic regions from SNP 170350 to 170950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,136 DEBUG Processing 596/709 atomic regions from SNP 178581 to 179181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,182 DEBUG Processing 492/640 atomic regions from SNP 147341 to 147941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,206 DEBUG Processing 372/545 atomic regions from SNP 111369 to 111969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,242 DEBUG Processing 346/585 atomic regions from SNP 103794 to 104394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,281 DEBUG Processing 569/667 atomic regions from SNP 170650 to 171250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,352 DEBUG Processing 597/709 atomic regions from SNP 178881 to 179481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,374 DEBUG Processing 493/640 atomic regions from SNP 147641 to 148241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,399 DEBUG Processing 373/545 atomic regions from SNP 111669 to 112269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,445 DEBUG Processing 347/585 atomic regions from SNP 104094 to 104694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,482 DEBUG Processing 570/667 atomic regions from SNP 170950 to 171550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,566 DEBUG Processing 494/640 atomic regions from SNP 147941 to 148541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,569 DEBUG Processing 598/709 atomic regions from SNP 179181 to 179781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,593 DEBUG Processing 374/545 atomic regions from SNP 111969 to 112569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,647 DEBUG Processing 348/585 atomic regions from SNP 104394 to 104994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,684 DEBUG Processing 571/667 atomic regions from SNP 171250 to 171850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,761 DEBUG Processing 495/640 atomic regions from SNP 148241 to 148841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,791 DEBUG Processing 375/545 atomic regions from SNP 112269 to 112869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,792 DEBUG Processing 599/709 atomic regions from SNP 179481 to 180081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,845 DEBUG Processing 349/585 atomic regions from SNP 104694 to 105294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,886 DEBUG Processing 572/667 atomic regions from SNP 171550 to 172150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,958 DEBUG Processing 496/640 atomic regions from SNP 148541 to 149141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,993 DEBUG Processing 376/545 atomic regions from SNP 112569 to 113169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,017 DEBUG Processing 600/709 atomic regions from SNP 179781 to 180381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,049 DEBUG Processing 350/585 atomic regions from SNP 104994 to 105594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,090 DEBUG Processing 573/667 atomic regions from SNP 171850 to 172450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,159 DEBUG Processing 497/640 atomic regions from SNP 148841 to 149441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,193 DEBUG Processing 377/545 atomic regions from SNP 112869 to 113469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,244 DEBUG Processing 601/709 atomic regions from SNP 180081 to 180681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,261 DEBUG Processing 351/585 atomic regions from SNP 105294 to 105894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,299 DEBUG Processing 574/667 atomic regions from SNP 172150 to 172750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,358 DEBUG Processing 498/640 atomic regions from SNP 149141 to 149741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,388 DEBUG Processing 378/545 atomic regions from SNP 113169 to 113769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,468 DEBUG Processing 602/709 atomic regions from SNP 180381 to 180981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,469 DEBUG Processing 352/585 atomic regions from SNP 105594 to 106194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,510 DEBUG Processing 575/667 atomic regions from SNP 172450 to 173050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,559 DEBUG Processing 499/640 atomic regions from SNP 149441 to 150041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,577 DEBUG Processing 379/545 atomic regions from SNP 113469 to 114069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,672 DEBUG Processing 353/585 atomic regions from SNP 105894 to 106494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,687 DEBUG Processing 603/709 atomic regions from SNP 180681 to 181281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,709 DEBUG Processing 576/667 atomic regions from SNP 172750 to 173350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,759 DEBUG Processing 500/640 atomic regions from SNP 149741 to 150341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,772 DEBUG Processing 380/545 atomic regions from SNP 113769 to 114369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,872 DEBUG Processing 354/585 atomic regions from SNP 106194 to 106794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,899 DEBUG Processing 604/709 atomic regions from SNP 180981 to 181581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,905 DEBUG Processing 577/667 atomic regions from SNP 173050 to 173650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,961 DEBUG Processing 501/640 atomic regions from SNP 150041 to 150641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,975 DEBUG Processing 381/545 atomic regions from SNP 114069 to 114669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,071 DEBUG Processing 355/585 atomic regions from SNP 106494 to 107094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,105 DEBUG Processing 578/667 atomic regions from SNP 173350 to 173950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,119 DEBUG Processing 605/709 atomic regions from SNP 181281 to 181881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,166 DEBUG Processing 502/640 atomic regions from SNP 150341 to 150941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,180 DEBUG Processing 382/545 atomic regions from SNP 114369 to 114969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,273 DEBUG Processing 356/585 atomic regions from SNP 106794 to 107394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,309 DEBUG Processing 579/667 atomic regions from SNP 173650 to 174250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,337 DEBUG Processing 606/709 atomic regions from SNP 181581 to 182181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,369 DEBUG Processing 503/640 atomic regions from SNP 150641 to 151241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,384 DEBUG Processing 383/545 atomic regions from SNP 114669 to 115269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,479 DEBUG Processing 357/585 atomic regions from SNP 107094 to 107694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,516 DEBUG Processing 580/667 atomic regions from SNP 173950 to 174550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,560 DEBUG Processing 607/709 atomic regions from SNP 181881 to 182481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,569 DEBUG Processing 504/640 atomic regions from SNP 150941 to 151541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,583 DEBUG Processing 384/545 atomic regions from SNP 114969 to 115569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,696 DEBUG Processing 358/585 atomic regions from SNP 107394 to 107994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,723 DEBUG Processing 581/667 atomic regions from SNP 174250 to 174850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,768 DEBUG Processing 505/640 atomic regions from SNP 151241 to 151841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,781 DEBUG Processing 608/709 atomic regions from SNP 182181 to 182781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,786 DEBUG Processing 385/545 atomic regions from SNP 115269 to 115869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,902 DEBUG Processing 359/585 atomic regions from SNP 107694 to 108294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,929 DEBUG Processing 582/667 atomic regions from SNP 174550 to 175150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,969 DEBUG Processing 506/640 atomic regions from SNP 151541 to 152141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,990 DEBUG Processing 386/545 atomic regions from SNP 115569 to 116169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,005 DEBUG Processing 609/709 atomic regions from SNP 182481 to 183081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,110 DEBUG Processing 360/585 atomic regions from SNP 107994 to 108594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,133 DEBUG Processing 583/667 atomic regions from SNP 174850 to 175450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,171 DEBUG Processing 507/640 atomic regions from SNP 151841 to 152441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,192 DEBUG Processing 387/545 atomic regions from SNP 115869 to 116469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,227 DEBUG Processing 610/709 atomic regions from SNP 182781 to 183381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,318 DEBUG Processing 361/585 atomic regions from SNP 108294 to 108894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,340 DEBUG Processing 584/667 atomic regions from SNP 175150 to 175750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,380 DEBUG Processing 508/640 atomic regions from SNP 152141 to 152741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,396 DEBUG Processing 388/545 atomic regions from SNP 116169 to 116769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,454 DEBUG Processing 611/709 atomic regions from SNP 183081 to 183681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,529 DEBUG Processing 362/585 atomic regions from SNP 108594 to 109194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,551 DEBUG Processing 585/667 atomic regions from SNP 175450 to 176050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,586 DEBUG Processing 509/640 atomic regions from SNP 152441 to 153041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,598 DEBUG Processing 389/545 atomic regions from SNP 116469 to 117069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,685 DEBUG Processing 612/709 atomic regions from SNP 183381 to 183981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,741 DEBUG Processing 363/585 atomic regions from SNP 108894 to 109494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,764 DEBUG Processing 586/667 atomic regions from SNP 175750 to 176350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,795 DEBUG Processing 510/640 atomic regions from SNP 152741 to 153341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,801 DEBUG Processing 390/545 atomic regions from SNP 116769 to 117369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,924 DEBUG Processing 613/709 atomic regions from SNP 183681 to 184281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,953 DEBUG Processing 364/585 atomic regions from SNP 109194 to 109794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,973 DEBUG Processing 587/667 atomic regions from SNP 176050 to 176650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,998 DEBUG Processing 511/640 atomic regions from SNP 153041 to 153641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,006 DEBUG Processing 391/545 atomic regions from SNP 117069 to 117669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,159 DEBUG Processing 614/709 atomic regions from SNP 183981 to 184581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,161 DEBUG Processing 365/585 atomic regions from SNP 109494 to 110094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,186 DEBUG Processing 588/667 atomic regions from SNP 176350 to 176950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,207 DEBUG Processing 512/640 atomic regions from SNP 153341 to 153941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,217 DEBUG Processing 392/545 atomic regions from SNP 117369 to 117969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,366 DEBUG Processing 366/585 atomic regions from SNP 109794 to 110394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,398 DEBUG Processing 615/709 atomic regions from SNP 184281 to 184881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,399 DEBUG Processing 589/667 atomic regions from SNP 176650 to 177250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,419 DEBUG Processing 513/640 atomic regions from SNP 153641 to 154241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,424 DEBUG Processing 393/545 atomic regions from SNP 117669 to 118269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,567 DEBUG Processing 367/585 atomic regions from SNP 110094 to 110694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,616 DEBUG Processing 590/667 atomic regions from SNP 176950 to 177550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,627 DEBUG Processing 394/545 atomic regions from SNP 117969 to 118569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,631 DEBUG Processing 514/640 atomic regions from SNP 153941 to 154541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,638 DEBUG Processing 616/709 atomic regions from SNP 184581 to 185181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,772 DEBUG Processing 368/585 atomic regions from SNP 110394 to 110994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,825 DEBUG Processing 395/545 atomic regions from SNP 118269 to 118869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,841 DEBUG Processing 591/667 atomic regions from SNP 177250 to 177850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,843 DEBUG Processing 515/640 atomic regions from SNP 154241 to 154841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,881 DEBUG Processing 617/709 atomic regions from SNP 184881 to 185481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,982 DEBUG Processing 369/585 atomic regions from SNP 110694 to 111294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,023 DEBUG Processing 396/545 atomic regions from SNP 118569 to 119169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,056 DEBUG Processing 516/640 atomic regions from SNP 154541 to 155141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,078 DEBUG Processing 592/667 atomic regions from SNP 177550 to 178150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,128 DEBUG Processing 618/709 atomic regions from SNP 185181 to 185781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,197 DEBUG Processing 370/585 atomic regions from SNP 110994 to 111594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,226 DEBUG Processing 397/545 atomic regions from SNP 118869 to 119469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,263 DEBUG Processing 517/640 atomic regions from SNP 154841 to 155441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,294 DEBUG Processing 593/667 atomic regions from SNP 177850 to 178450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,348 DEBUG Processing 619/709 atomic regions from SNP 185481 to 186081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,408 DEBUG Processing 371/585 atomic regions from SNP 111294 to 111894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,433 DEBUG Processing 398/545 atomic regions from SNP 119169 to 119769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,465 DEBUG Processing 518/640 atomic regions from SNP 155141 to 155741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,500 DEBUG Processing 594/667 atomic regions from SNP 178150 to 178750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,565 DEBUG Processing 620/709 atomic regions from SNP 185781 to 186381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,621 DEBUG Processing 372/585 atomic regions from SNP 111594 to 112194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,641 DEBUG Processing 399/545 atomic regions from SNP 119469 to 120069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,675 DEBUG Processing 519/640 atomic regions from SNP 155441 to 156041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,712 DEBUG Processing 595/667 atomic regions from SNP 178450 to 179050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,785 DEBUG Processing 621/709 atomic regions from SNP 186081 to 186681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,832 DEBUG Processing 373/585 atomic regions from SNP 111894 to 112494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,846 DEBUG Processing 400/545 atomic regions from SNP 119769 to 120369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,908 DEBUG Processing 520/640 atomic regions from SNP 155741 to 156341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,931 DEBUG Processing 596/667 atomic regions from SNP 178750 to 179350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,019 DEBUG Processing 622/709 atomic regions from SNP 186381 to 186981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,039 DEBUG Processing 374/585 atomic regions from SNP 112194 to 112794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,048 DEBUG Processing 401/545 atomic regions from SNP 120069 to 120669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,113 DEBUG Processing 521/640 atomic regions from SNP 156041 to 156641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,141 DEBUG Processing 597/667 atomic regions from SNP 179050 to 179650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,242 DEBUG Processing 623/709 atomic regions from SNP 186681 to 187281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,246 DEBUG Processing 375/585 atomic regions from SNP 112494 to 113094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,248 DEBUG Processing 402/545 atomic regions from SNP 120369 to 120969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,314 DEBUG Processing 522/640 atomic regions from SNP 156341 to 156941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,349 DEBUG Processing 598/667 atomic regions from SNP 179350 to 179950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,453 DEBUG Processing 403/545 atomic regions from SNP 120669 to 121269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,455 DEBUG Processing 376/585 atomic regions from SNP 112794 to 113394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,466 DEBUG Processing 624/709 atomic regions from SNP 186981 to 187581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,519 DEBUG Processing 523/640 atomic regions from SNP 156641 to 157241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,563 DEBUG Processing 599/667 atomic regions from SNP 179650 to 180250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,657 DEBUG Processing 404/545 atomic regions from SNP 120969 to 121569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,670 DEBUG Processing 377/585 atomic regions from SNP 113094 to 113694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,695 DEBUG Processing 625/709 atomic regions from SNP 187281 to 187881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,736 DEBUG Processing 524/640 atomic regions from SNP 156941 to 157541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,776 DEBUG Processing 600/667 atomic regions from SNP 179950 to 180550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,859 DEBUG Processing 405/545 atomic regions from SNP 121269 to 121869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,877 DEBUG Processing 378/585 atomic regions from SNP 113394 to 113994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,918 DEBUG Processing 626/709 atomic regions from SNP 187581 to 188181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,971 DEBUG Processing 525/640 atomic regions from SNP 157241 to 157841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,985 DEBUG Processing 601/667 atomic regions from SNP 180250 to 180850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,048 DEBUG Processing 406/545 atomic regions from SNP 121569 to 122169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,074 DEBUG Processing 379/585 atomic regions from SNP 113694 to 114294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,134 DEBUG Processing 627/709 atomic regions from SNP 187881 to 188481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,183 DEBUG Processing 526/640 atomic regions from SNP 157541 to 158141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,196 DEBUG Processing 602/667 atomic regions from SNP 180550 to 181150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,239 DEBUG Processing 407/545 atomic regions from SNP 121869 to 122469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,269 DEBUG Processing 380/585 atomic regions from SNP 113994 to 114594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,343 DEBUG Processing 628/709 atomic regions from SNP 188181 to 188781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,390 DEBUG Processing 527/640 atomic regions from SNP 157841 to 158441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,406 DEBUG Processing 603/667 atomic regions from SNP 180850 to 181450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,435 DEBUG Processing 408/545 atomic regions from SNP 122169 to 122769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,467 DEBUG Processing 381/585 atomic regions from SNP 114294 to 114894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,552 DEBUG Processing 629/709 atomic regions from SNP 188481 to 189081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,601 DEBUG Processing 528/640 atomic regions from SNP 158141 to 158741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,618 DEBUG Processing 604/667 atomic regions from SNP 181150 to 181750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,640 DEBUG Processing 409/545 atomic regions from SNP 122469 to 123069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,679 DEBUG Processing 382/585 atomic regions from SNP 114594 to 115194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,770 DEBUG Processing 630/709 atomic regions from SNP 188781 to 189381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,822 DEBUG Processing 529/640 atomic regions from SNP 158441 to 159041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,830 DEBUG Processing 605/667 atomic regions from SNP 181450 to 182050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,842 DEBUG Processing 410/545 atomic regions from SNP 122769 to 123369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,889 DEBUG Processing 383/585 atomic regions from SNP 114894 to 115494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,991 DEBUG Processing 631/709 atomic regions from SNP 189081 to 189681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,040 DEBUG Processing 606/667 atomic regions from SNP 181750 to 182350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,044 DEBUG Processing 411/545 atomic regions from SNP 123069 to 123669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,046 DEBUG Processing 530/640 atomic regions from SNP 158741 to 159341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,095 DEBUG Processing 384/585 atomic regions from SNP 115194 to 115794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,214 DEBUG Processing 632/709 atomic regions from SNP 189381 to 189981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,243 DEBUG Processing 412/545 atomic regions from SNP 123369 to 123969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,245 DEBUG Processing 607/667 atomic regions from SNP 182050 to 182650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,247 DEBUG Processing 531/640 atomic regions from SNP 159041 to 159641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,299 DEBUG Processing 385/585 atomic regions from SNP 115494 to 116094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,444 DEBUG Processing 413/545 atomic regions from SNP 123669 to 124269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,448 DEBUG Processing 532/640 atomic regions from SNP 159341 to 159941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,448 DEBUG Processing 608/667 atomic regions from SNP 182350 to 182950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,458 DEBUG Processing 633/709 atomic regions from SNP 189681 to 190281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,506 DEBUG Processing 386/585 atomic regions from SNP 115794 to 116394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,647 DEBUG Processing 414/545 atomic regions from SNP 123969 to 124569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,650 DEBUG Processing 533/640 atomic regions from SNP 159641 to 160241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,666 DEBUG Processing 609/667 atomic regions from SNP 182650 to 183250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,712 DEBUG Processing 634/709 atomic regions from SNP 189981 to 190581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,714 DEBUG Processing 387/585 atomic regions from SNP 116094 to 116694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,844 DEBUG Processing 415/545 atomic regions from SNP 124269 to 124869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,849 DEBUG Processing 534/640 atomic regions from SNP 159941 to 160541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,874 DEBUG Processing 610/667 atomic regions from SNP 182950 to 183550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,922 DEBUG Processing 388/585 atomic regions from SNP 116394 to 116994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,938 DEBUG Processing 635/709 atomic regions from SNP 190281 to 190881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,033 DEBUG Processing 416/545 atomic regions from SNP 124569 to 125169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,052 DEBUG Processing 535/640 atomic regions from SNP 160241 to 160841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,074 DEBUG Processing 611/667 atomic regions from SNP 183250 to 183850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,132 DEBUG Processing 389/585 atomic regions from SNP 116694 to 117294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,161 DEBUG Processing 636/709 atomic regions from SNP 190581 to 191181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,231 DEBUG Processing 417/545 atomic regions from SNP 124869 to 125469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,264 DEBUG Processing 536/640 atomic regions from SNP 160541 to 161141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,287 DEBUG Processing 612/667 atomic regions from SNP 183550 to 184150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,345 DEBUG Processing 390/585 atomic regions from SNP 116994 to 117594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,385 DEBUG Processing 637/709 atomic regions from SNP 190881 to 191481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,428 DEBUG Processing 418/545 atomic regions from SNP 125169 to 125769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,471 DEBUG Processing 537/640 atomic regions from SNP 160841 to 161441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,491 DEBUG Processing 613/667 atomic regions from SNP 183850 to 184450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,549 DEBUG Processing 391/585 atomic regions from SNP 117294 to 117894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,613 DEBUG Processing 638/709 atomic regions from SNP 191181 to 191781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,628 DEBUG Processing 419/545 atomic regions from SNP 125469 to 126069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,682 DEBUG Processing 538/640 atomic regions from SNP 161141 to 161741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,700 DEBUG Processing 614/667 atomic regions from SNP 184150 to 184750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,750 DEBUG Processing 392/585 atomic regions from SNP 117594 to 118194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,829 DEBUG Processing 420/545 atomic regions from SNP 125769 to 126369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,838 DEBUG Processing 639/709 atomic regions from SNP 191481 to 192081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,889 DEBUG Processing 539/640 atomic regions from SNP 161441 to 162041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,909 DEBUG Processing 615/667 atomic regions from SNP 184450 to 185050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,947 DEBUG Processing 393/585 atomic regions from SNP 117894 to 118494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,033 DEBUG Processing 421/545 atomic regions from SNP 126069 to 126669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,061 DEBUG Processing 640/709 atomic regions from SNP 191781 to 192381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,112 DEBUG Processing 540/640 atomic regions from SNP 161741 to 162341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,122 DEBUG Processing 616/667 atomic regions from SNP 184750 to 185350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,150 DEBUG Processing 394/585 atomic regions from SNP 118194 to 118794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,235 DEBUG Processing 422/545 atomic regions from SNP 126369 to 126969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,284 DEBUG Processing 641/709 atomic regions from SNP 192081 to 192681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,322 DEBUG Processing 541/640 atomic regions from SNP 162041 to 162641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,334 DEBUG Processing 617/667 atomic regions from SNP 185050 to 185650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,353 DEBUG Processing 395/585 atomic regions from SNP 118494 to 119094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,434 DEBUG Processing 423/545 atomic regions from SNP 126669 to 127269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,505 DEBUG Processing 642/709 atomic regions from SNP 192381 to 192981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,531 DEBUG Processing 542/640 atomic regions from SNP 162341 to 162941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,548 DEBUG Processing 618/667 atomic regions from SNP 185350 to 185950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,558 DEBUG Processing 396/585 atomic regions from SNP 118794 to 119394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,638 DEBUG Processing 424/545 atomic regions from SNP 126969 to 127569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,739 DEBUG Processing 643/709 atomic regions from SNP 192681 to 193281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,741 DEBUG Processing 543/640 atomic regions from SNP 162641 to 163241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,761 DEBUG Processing 619/667 atomic regions from SNP 185650 to 186250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,796 DEBUG Processing 397/585 atomic regions from SNP 119094 to 119694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,839 DEBUG Processing 425/545 atomic regions from SNP 127269 to 127869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,966 DEBUG Processing 644/709 atomic regions from SNP 192981 to 193581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,974 DEBUG Processing 544/640 atomic regions from SNP 162941 to 163541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:52,991 DEBUG Processing 620/667 atomic regions from SNP 185950 to 186550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,011 DEBUG Processing 398/585 atomic regions from SNP 119394 to 119994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,040 DEBUG Processing 426/545 atomic regions from SNP 127569 to 128169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,183 DEBUG Processing 545/640 atomic regions from SNP 163241 to 163841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,193 DEBUG Processing 645/709 atomic regions from SNP 193281 to 193881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,222 DEBUG Processing 399/585 atomic regions from SNP 119694 to 120294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,229 DEBUG Processing 621/667 atomic regions from SNP 186250 to 186850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,240 DEBUG Processing 427/545 atomic regions from SNP 127869 to 128469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,391 DEBUG Processing 546/640 atomic regions from SNP 163541 to 164141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,417 DEBUG Processing 646/709 atomic regions from SNP 193581 to 194181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,433 DEBUG Processing 400/585 atomic regions from SNP 119994 to 120594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,446 DEBUG Processing 428/545 atomic regions from SNP 128169 to 128769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,463 DEBUG Processing 622/667 atomic regions from SNP 186550 to 187150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,595 DEBUG Processing 547/640 atomic regions from SNP 163841 to 164441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,645 DEBUG Processing 647/709 atomic regions from SNP 193881 to 194481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,649 DEBUG Processing 429/545 atomic regions from SNP 128469 to 129069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,654 DEBUG Processing 401/585 atomic regions from SNP 120294 to 120894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,686 DEBUG Processing 623/667 atomic regions from SNP 186850 to 187450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,805 DEBUG Processing 548/640 atomic regions from SNP 164141 to 164741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:53,849 DEBUG Processing 430/545 atomic regions from SNP 128769 to 129369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,862 DEBUG Processing 402/585 atomic regions from SNP 120594 to 121194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,869 DEBUG Processing 648/709 atomic regions from SNP 194181 to 194781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,905 DEBUG Processing 624/667 atomic regions from SNP 187150 to 187750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,015 DEBUG Processing 549/640 atomic regions from SNP 164441 to 165041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,052 DEBUG Processing 431/545 atomic regions from SNP 129069 to 129669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,071 DEBUG Processing 403/585 atomic regions from SNP 120894 to 121494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,093 DEBUG Processing 649/709 atomic regions from SNP 194481 to 195081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,119 DEBUG Processing 625/667 atomic regions from SNP 187450 to 188050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,222 DEBUG Processing 550/640 atomic regions from SNP 164741 to 165341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,256 DEBUG Processing 432/545 atomic regions from SNP 129369 to 129969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,281 DEBUG Processing 404/585 atomic regions from SNP 121194 to 121794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,316 DEBUG Processing 650/709 atomic regions from SNP 194781 to 195381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,334 DEBUG Processing 626/667 atomic regions from SNP 187750 to 188350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,432 DEBUG Processing 551/640 atomic regions from SNP 165041 to 165641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,455 DEBUG Processing 433/545 atomic regions from SNP 129669 to 130269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,486 DEBUG Processing 405/585 atomic regions from SNP 121494 to 122094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,535 DEBUG Processing 651/709 atomic regions from SNP 195081 to 195681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,561 DEBUG Processing 627/667 atomic regions from SNP 188050 to 188650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,642 DEBUG Processing 552/640 atomic regions from SNP 165341 to 165941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,653 DEBUG Processing 434/545 atomic regions from SNP 129969 to 130569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,701 DEBUG Processing 406/585 atomic regions from SNP 121794 to 122394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,754 DEBUG Processing 652/709 atomic regions from SNP 195381 to 195981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,785 DEBUG Processing 628/667 atomic regions from SNP 188350 to 188950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,848 DEBUG Processing 435/545 atomic regions from SNP 130269 to 130869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,875 DEBUG Processing 553/640 atomic regions from SNP 165641 to 166241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:54,907 DEBUG Processing 407/585 atomic regions from SNP 122094 to 122694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,976 DEBUG Processing 653/709 atomic regions from SNP 195681 to 196281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,994 DEBUG Processing 629/667 atomic regions from SNP 188650 to 189250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,048 DEBUG Processing 436/545 atomic regions from SNP 130569 to 131169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,115 DEBUG Processing 408/585 atomic regions from SNP 122394 to 122994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,116 DEBUG Processing 554/640 atomic regions from SNP 165941 to 166541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,200 DEBUG Processing 654/709 atomic regions from SNP 195981 to 196581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,206 DEBUG Processing 630/667 atomic regions from SNP 188950 to 189550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,241 DEBUG Processing 437/545 atomic regions from SNP 130869 to 131469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,316 DEBUG Processing 409/585 atomic regions from SNP 122694 to 123294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,327 DEBUG Processing 555/640 atomic regions from SNP 166241 to 166841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,418 DEBUG Processing 631/667 atomic regions from SNP 189250 to 189850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,422 DEBUG Processing 655/709 atomic regions from SNP 196281 to 196881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,436 DEBUG Processing 438/545 atomic regions from SNP 131169 to 131769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,511 DEBUG Processing 410/585 atomic regions from SNP 122994 to 123594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,530 DEBUG Processing 556/640 atomic regions from SNP 166541 to 167141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,638 DEBUG Processing 632/667 atomic regions from SNP 189550 to 190150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,643 DEBUG Processing 439/545 atomic regions from SNP 131469 to 132069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,650 DEBUG Processing 656/709 atomic regions from SNP 196581 to 197181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,707 DEBUG Processing 411/585 atomic regions from SNP 123294 to 123894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,738 DEBUG Processing 557/640 atomic regions from SNP 166841 to 167441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:55,853 DEBUG Processing 440/545 atomic regions from SNP 131769 to 132369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,868 DEBUG Processing 633/667 atomic regions from SNP 189850 to 190450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,884 DEBUG Processing 657/709 atomic regions from SNP 196881 to 197481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,915 DEBUG Processing 412/585 atomic regions from SNP 123594 to 124194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,958 DEBUG Processing 558/640 atomic regions from SNP 167141 to 167741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,052 DEBUG Processing 441/545 atomic regions from SNP 132069 to 132669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,083 DEBUG Processing 634/667 atomic regions from SNP 190150 to 190750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,115 DEBUG Processing 658/709 atomic regions from SNP 197181 to 197781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,129 DEBUG Processing 413/585 atomic regions from SNP 123894 to 124494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,181 DEBUG Processing 559/640 atomic regions from SNP 167441 to 168041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,242 DEBUG Processing 442/545 atomic regions from SNP 132369 to 132969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,293 DEBUG Processing 635/667 atomic regions from SNP 190450 to 191050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,337 DEBUG Processing 659/709 atomic regions from SNP 197481 to 198081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,360 DEBUG Processing 414/585 atomic regions from SNP 124194 to 124794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,399 DEBUG Processing 560/640 atomic regions from SNP 167741 to 168341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,430 DEBUG Processing 443/545 atomic regions from SNP 132669 to 133269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,505 DEBUG Processing 636/667 atomic regions from SNP 190750 to 191350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,560 DEBUG Processing 660/709 atomic regions from SNP 197781 to 198381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,588 DEBUG Processing 415/585 atomic regions from SNP 124494 to 125094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,605 DEBUG Processing 561/640 atomic regions from SNP 168041 to 168641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,628 DEBUG Processing 444/545 atomic regions from SNP 132969 to 133569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,715 DEBUG Processing 637/667 atomic regions from SNP 191050 to 191650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,785 DEBUG Processing 661/709 atomic regions from SNP 198081 to 198681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,811 DEBUG Processing 562/640 atomic regions from SNP 168341 to 168941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:56,823 DEBUG Processing 416/585 atomic regions from SNP 124794 to 125394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,827 DEBUG Segmenting atomic regions: 2025-01-31 09:51:56,828 DEBUG Processing 445/545 atomic regions from SNP 133269 to 133869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,897 DEBUG Processing 1/519 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:56,931 DEBUG Processing 638/667 atomic regions from SNP 191350 to 191950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,006 DEBUG Processing 662/709 atomic regions from SNP 198381 to 198981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,014 DEBUG Processing 563/640 atomic regions from SNP 168641 to 169241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,028 DEBUG Processing 446/545 atomic regions from SNP 133569 to 134169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,069 DEBUG Processing 417/585 atomic regions from SNP 125094 to 125694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,088 DEBUG Processing 2/519 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,149 DEBUG Processing 639/667 atomic regions from SNP 191650 to 192250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,218 DEBUG Processing 564/640 atomic regions from SNP 168941 to 169541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,226 DEBUG Processing 447/545 atomic regions from SNP 133869 to 134469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,229 DEBUG Processing 663/709 atomic regions from SNP 198681 to 199281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,274 DEBUG Processing 3/519 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,305 DEBUG Processing 418/585 atomic regions from SNP 125394 to 125994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,362 DEBUG Processing 640/667 atomic regions from SNP 191950 to 192550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,424 DEBUG Processing 448/545 atomic regions from SNP 134169 to 134769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,425 DEBUG Processing 565/640 atomic regions from SNP 169241 to 169841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,454 DEBUG Processing 664/709 atomic regions from SNP 198981 to 199581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,459 DEBUG Processing 4/519 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,543 DEBUG Processing 419/585 atomic regions from SNP 125694 to 126294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,576 DEBUG Processing 641/667 atomic regions from SNP 192250 to 192850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,621 DEBUG Processing 449/545 atomic regions from SNP 134469 to 135069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,633 DEBUG Processing 566/640 atomic regions from SNP 169541 to 170141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,647 DEBUG Processing 5/519 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,675 DEBUG Processing 665/709 atomic regions from SNP 199281 to 199881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,777 DEBUG Processing 420/585 atomic regions from SNP 125994 to 126594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,786 DEBUG Processing 642/667 atomic regions from SNP 192550 to 193150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,814 DEBUG Processing 450/545 atomic regions from SNP 134769 to 135369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,842 DEBUG Processing 6/519 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,845 DEBUG Processing 567/640 atomic regions from SNP 169841 to 170441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:57,893 DEBUG Processing 666/709 atomic regions from SNP 199581 to 200181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,996 DEBUG Processing 643/667 atomic regions from SNP 192850 to 193450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,000 DEBUG Processing 421/585 atomic regions from SNP 126294 to 126894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,008 DEBUG Processing 451/545 atomic regions from SNP 135069 to 135669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,038 DEBUG Processing 7/519 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,056 DEBUG Processing 568/640 atomic regions from SNP 170141 to 170741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,106 DEBUG Processing 667/709 atomic regions from SNP 199881 to 200481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,203 DEBUG Processing 644/667 atomic regions from SNP 193150 to 193750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,205 DEBUG Processing 452/545 atomic regions from SNP 135369 to 135969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,206 DEBUG Processing 422/585 atomic regions from SNP 126594 to 127194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,234 DEBUG Processing 8/519 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,269 DEBUG Processing 569/640 atomic regions from SNP 170441 to 171041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,324 DEBUG Processing 668/709 atomic regions from SNP 200181 to 200781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,405 DEBUG Processing 453/545 atomic regions from SNP 135669 to 136269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,408 DEBUG Processing 645/667 atomic regions from SNP 193450 to 194050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,415 DEBUG Processing 423/585 atomic regions from SNP 126894 to 127494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,427 DEBUG Processing 9/519 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,479 DEBUG Processing 570/640 atomic regions from SNP 170741 to 171341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,563 DEBUG Processing 669/709 atomic regions from SNP 200481 to 201081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,603 DEBUG Processing 454/545 atomic regions from SNP 135969 to 136569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,615 DEBUG Processing 646/667 atomic regions from SNP 193750 to 194350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,618 DEBUG Processing 424/585 atomic regions from SNP 127194 to 127794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,621 DEBUG Processing 10/519 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,695 DEBUG Processing 571/640 atomic regions from SNP 171041 to 171641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:58,800 DEBUG Processing 455/545 atomic regions from SNP 136269 to 136869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,810 DEBUG Processing 11/519 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,816 DEBUG Processing 670/709 atomic regions from SNP 200781 to 201381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,823 DEBUG Processing 425/585 atomic regions from SNP 127494 to 128094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,826 DEBUG Processing 647/667 atomic regions from SNP 194050 to 194650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,897 DEBUG Processing 572/640 atomic regions from SNP 171341 to 171941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,002 DEBUG Processing 456/545 atomic regions from SNP 136569 to 137169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,004 DEBUG Processing 12/519 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,037 DEBUG Processing 648/667 atomic regions from SNP 194350 to 194950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,048 DEBUG Processing 426/585 atomic regions from SNP 127794 to 128394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,066 DEBUG Processing 671/709 atomic regions from SNP 201081 to 201681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,098 DEBUG Processing 573/640 atomic regions from SNP 171641 to 172241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,205 DEBUG Processing 13/519 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,214 DEBUG Processing 457/545 atomic regions from SNP 136869 to 137469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,250 DEBUG Processing 649/667 atomic regions from SNP 194650 to 195250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,269 DEBUG Processing 427/585 atomic regions from SNP 128094 to 128694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,301 DEBUG Processing 574/640 atomic regions from SNP 171941 to 172541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,311 DEBUG Processing 672/709 atomic regions from SNP 201381 to 201981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,398 DEBUG Processing 14/519 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,410 DEBUG Processing 458/545 atomic regions from SNP 137169 to 137769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,466 DEBUG Processing 650/667 atomic regions from SNP 194950 to 195550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,497 DEBUG Processing 428/585 atomic regions from SNP 128394 to 128994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,510 DEBUG Processing 575/640 atomic regions from SNP 172241 to 172841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,562 DEBUG Processing 673/709 atomic regions from SNP 201681 to 202281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,586 DEBUG Processing 15/519 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,599 DEBUG Processing 459/545 atomic regions from SNP 137469 to 138069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,685 DEBUG Processing 651/667 atomic regions from SNP 195250 to 195850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,719 DEBUG Processing 576/640 atomic regions from SNP 172541 to 173141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,727 DEBUG Processing 429/585 atomic regions from SNP 128694 to 129294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,776 DEBUG Processing 16/519 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,797 DEBUG Processing 460/545 atomic regions from SNP 137769 to 138369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,814 DEBUG Processing 674/709 atomic regions from SNP 201981 to 202581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,899 DEBUG Processing 652/667 atomic regions from SNP 195550 to 196150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,934 DEBUG Processing 577/640 atomic regions from SNP 172841 to 173441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:59,949 DEBUG Processing 430/585 atomic regions from SNP 128994 to 129594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:59,971 DEBUG Processing 17/519 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,002 DEBUG Processing 461/545 atomic regions from SNP 138069 to 138669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,056 DEBUG Processing 675/709 atomic regions from SNP 202281 to 202881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,115 DEBUG Processing 653/667 atomic regions from SNP 195850 to 196450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,151 DEBUG Processing 578/640 atomic regions from SNP 173141 to 173741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,171 DEBUG Processing 431/585 atomic regions from SNP 129294 to 129894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,175 DEBUG Processing 18/519 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,207 DEBUG Processing 462/545 atomic regions from SNP 138369 to 138969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,290 DEBUG Processing 676/709 atomic regions from SNP 202581 to 203181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,327 DEBUG Processing 654/667 atomic regions from SNP 196150 to 196750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,362 DEBUG Processing 579/640 atomic regions from SNP 173441 to 174041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,374 DEBUG Processing 19/519 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,390 DEBUG Processing 432/585 atomic regions from SNP 129594 to 130194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,408 DEBUG Processing 463/545 atomic regions from SNP 138669 to 139269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,538 DEBUG Processing 655/667 atomic regions from SNP 196450 to 197050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,539 DEBUG Processing 677/709 atomic regions from SNP 202881 to 203481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,572 DEBUG Processing 20/519 atomic regions from SNP 5719 to 6319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,573 DEBUG Processing 580/640 atomic regions from SNP 173741 to 174341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,608 DEBUG Processing 464/545 atomic regions from SNP 138969 to 139569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,627 DEBUG Processing 433/585 atomic regions from SNP 129894 to 130494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,749 DEBUG Processing 656/667 atomic regions from SNP 196750 to 197350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,769 DEBUG Processing 21/519 atomic regions from SNP 6019 to 6619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,782 DEBUG Processing 678/709 atomic regions from SNP 203181 to 203781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,784 DEBUG Processing 581/640 atomic regions from SNP 174041 to 174641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:00,810 DEBUG Processing 465/545 atomic regions from SNP 139269 to 139869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,856 DEBUG Processing 434/585 atomic regions from SNP 130194 to 130794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:00,964 DEBUG Processing 657/667 atomic regions from SNP 197050 to 197650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,977 DEBUG Processing 22/519 atomic regions from SNP 6319 to 6919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,993 DEBUG Processing 582/640 atomic regions from SNP 174341 to 174941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,015 DEBUG Processing 466/545 atomic regions from SNP 139569 to 140169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,025 DEBUG Processing 679/709 atomic regions from SNP 203481 to 204081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,089 DEBUG Processing 435/585 atomic regions from SNP 130494 to 131094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,171 DEBUG Processing 23/519 atomic regions from SNP 6619 to 7219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,176 DEBUG Processing 658/667 atomic regions from SNP 197350 to 197950 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,203 DEBUG Processing 583/640 atomic regions from SNP 174641 to 175241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,215 DEBUG Processing 467/545 atomic regions from SNP 139869 to 140469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,268 DEBUG Processing 680/709 atomic regions from SNP 203781 to 204381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,315 DEBUG Processing 436/585 atomic regions from SNP 130794 to 131394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,363 DEBUG Processing 24/519 atomic regions from SNP 6919 to 7519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,388 DEBUG Processing 659/667 atomic regions from SNP 197650 to 198250 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,410 DEBUG Processing 468/545 atomic regions from SNP 140169 to 140769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,411 DEBUG Processing 584/640 atomic regions from SNP 174941 to 175541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,501 DEBUG Processing 681/709 atomic regions from SNP 204081 to 204681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,550 DEBUG Processing 437/585 atomic regions from SNP 131094 to 131694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,555 DEBUG Processing 25/519 atomic regions from SNP 7219 to 7819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,600 DEBUG Processing 660/667 atomic regions from SNP 197950 to 198550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,605 DEBUG Processing 469/545 atomic regions from SNP 140469 to 141069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,619 DEBUG Processing 585/640 atomic regions from SNP 175241 to 175841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,745 DEBUG Processing 26/519 atomic regions from SNP 7519 to 8119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,748 DEBUG Processing 682/709 atomic regions from SNP 204381 to 204981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,792 DEBUG Processing 438/585 atomic regions from SNP 131394 to 131994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:01,813 DEBUG Processing 470/545 atomic regions from SNP 140769 to 141369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,813 DEBUG Processing 661/667 atomic regions from SNP 198250 to 198850 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,828 DEBUG Processing 586/640 atomic regions from SNP 175541 to 176141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:01,928 DEBUG Processing 27/519 atomic regions from SNP 7819 to 8419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,982 DEBUG Processing 683/709 atomic regions from SNP 204681 to 205281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,017 DEBUG Processing 439/585 atomic regions from SNP 131694 to 132294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,028 DEBUG Processing 662/667 atomic regions from SNP 198550 to 199150 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,029 DEBUG Processing 471/545 atomic regions from SNP 141069 to 141669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,042 DEBUG Processing 587/640 atomic regions from SNP 175841 to 176441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,112 DEBUG Processing 28/519 atomic regions from SNP 8119 to 8719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,218 DEBUG Processing 684/709 atomic regions from SNP 204981 to 205581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,240 DEBUG Processing 472/545 atomic regions from SNP 141369 to 141969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,241 DEBUG Processing 663/667 atomic regions from SNP 198850 to 199450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,262 DEBUG Processing 440/585 atomic regions from SNP 131994 to 132594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,276 DEBUG Processing 588/640 atomic regions from SNP 176141 to 176741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,303 DEBUG Processing 29/519 atomic regions from SNP 8419 to 9019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,438 DEBUG Processing 473/545 atomic regions from SNP 141669 to 142269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,450 DEBUG Processing 664/667 atomic regions from SNP 199150 to 199750 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,466 DEBUG Processing 685/709 atomic regions from SNP 205281 to 205881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,505 DEBUG Processing 30/519 atomic regions from SNP 8719 to 9319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,505 DEBUG Processing 441/585 atomic regions from SNP 132294 to 132894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,528 DEBUG Processing 589/640 atomic regions from SNP 176441 to 177041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,636 DEBUG Processing 474/545 atomic regions from SNP 141969 to 142569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,663 DEBUG Processing 665/667 atomic regions from SNP 199450 to 200050 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,702 DEBUG Processing 31/519 atomic regions from SNP 9019 to 9619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,707 DEBUG Processing 686/709 atomic regions from SNP 205581 to 206181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,729 DEBUG Processing 442/585 atomic regions from SNP 132594 to 133194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:02,772 DEBUG Processing 590/640 atomic regions from SNP 176741 to 177341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:02,836 DEBUG Processing 475/545 atomic regions from SNP 142269 to 142869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,873 DEBUG Processing 666/667 atomic regions from SNP 199750 to 200350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,893 DEBUG Processing 32/519 atomic regions from SNP 9319 to 9919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,933 DEBUG Processing 687/709 atomic regions from SNP 205881 to 206481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,935 DEBUG Processing 443/585 atomic regions from SNP 132894 to 133494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,010 DEBUG Processing 591/640 atomic regions from SNP 177041 to 177641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,027 DEBUG Processing 476/545 atomic regions from SNP 142569 to 143169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,084 DEBUG Processing 33/519 atomic regions from SNP 9619 to 10219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,104 DEBUG Processing 667/667 atomic regions from SNP 200050 to 200650 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,159 DEBUG Processing 444/585 atomic regions from SNP 133194 to 133794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,164 DEBUG Processing 688/709 atomic regions from SNP 206181 to 206781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,218 DEBUG Processing 477/545 atomic regions from SNP 142869 to 143469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,224 DEBUG Processing 592/640 atomic regions from SNP 177341 to 177941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,243 DEBUG Unique SNPs positions in subchromosome 1: 200651 2025-01-31 09:52:03,278 DEBUG Processing 34/519 atomic regions from SNP 9919 to 10519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,374 DEBUG Processing 445/585 atomic regions from SNP 133494 to 134094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,399 DEBUG Processing 689/709 atomic regions from SNP 206481 to 207081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,412 DEBUG Processing 478/545 atomic regions from SNP 143169 to 143769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,432 DEBUG Processing 593/640 atomic regions from SNP 177641 to 178241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,468 DEBUG Processing 35/519 atomic regions from SNP 10219 to 10819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,584 DEBUG Processing 446/585 atomic regions from SNP 133794 to 134394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,613 DEBUG Processing 479/545 atomic regions from SNP 143469 to 144069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,629 DEBUG Processing 690/709 atomic regions from SNP 206781 to 207381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,658 DEBUG Processing 594/640 atomic regions from SNP 177941 to 178541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,658 DEBUG Processing 36/519 atomic regions from SNP 10519 to 11119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,789 DEBUG Processing 447/585 atomic regions from SNP 134094 to 134694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:03,833 DEBUG Processing 480/545 atomic regions from SNP 143769 to 144369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,842 DEBUG Processing 37/519 atomic regions from SNP 10819 to 11419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,855 DEBUG Processing 691/709 atomic regions from SNP 207081 to 207681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,870 DEBUG Processing 595/640 atomic regions from SNP 178241 to 178841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:03,993 DEBUG Processing 448/585 atomic regions from SNP 134394 to 134994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,029 DEBUG Processing 38/519 atomic regions from SNP 11119 to 11719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,059 DEBUG Processing 481/545 atomic regions from SNP 144069 to 144669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,079 DEBUG Processing 692/709 atomic regions from SNP 207381 to 207981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,088 DEBUG Processing 596/640 atomic regions from SNP 178541 to 179141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,219 DEBUG Processing 39/519 atomic regions from SNP 11419 to 12019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,224 DEBUG Processing 449/585 atomic regions from SNP 134694 to 135294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,260 DEBUG Processing 482/545 atomic regions from SNP 144369 to 144969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,293 DEBUG Processing 597/640 atomic regions from SNP 178841 to 179441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,299 DEBUG Processing 693/709 atomic regions from SNP 207681 to 208281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,411 DEBUG Processing 40/519 atomic regions from SNP 11719 to 12319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,443 DEBUG Processing 450/585 atomic regions from SNP 134994 to 135594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,455 DEBUG Processing 483/545 atomic regions from SNP 144669 to 145269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,498 DEBUG Processing 598/640 atomic regions from SNP 179141 to 179741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,520 DEBUG Processing 694/709 atomic regions from SNP 207981 to 208581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,602 DEBUG Processing 41/519 atomic regions from SNP 12019 to 12619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,647 DEBUG Processing 484/545 atomic regions from SNP 144969 to 145569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,678 DEBUG Processing 451/585 atomic regions from SNP 135294 to 135894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,704 DEBUG Processing 599/640 atomic regions from SNP 179441 to 180041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,738 DEBUG Processing 695/709 atomic regions from SNP 208281 to 208881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,793 DEBUG Processing 42/519 atomic regions from SNP 12319 to 12919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,848 DEBUG Processing 485/545 atomic regions from SNP 145269 to 145869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,905 DEBUG Processing 600/640 atomic regions from SNP 179741 to 180341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:04,913 DEBUG Processing 452/585 atomic regions from SNP 135594 to 136194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:04,953 DEBUG Processing 696/709 atomic regions from SNP 208581 to 209181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,981 DEBUG Processing 43/519 atomic regions from SNP 12619 to 13219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,049 DEBUG Processing 486/545 atomic regions from SNP 145569 to 146169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,141 DEBUG Processing 601/640 atomic regions from SNP 180041 to 180641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,144 DEBUG Processing 453/585 atomic regions from SNP 135894 to 136494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,170 DEBUG Processing 44/519 atomic regions from SNP 12919 to 13519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,171 DEBUG Processing 697/709 atomic regions from SNP 208881 to 209481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,250 DEBUG Processing 487/545 atomic regions from SNP 145869 to 146469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,356 DEBUG Processing 45/519 atomic regions from SNP 13219 to 13819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,376 DEBUG Processing 454/585 atomic regions from SNP 136194 to 136794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,382 DEBUG Processing 602/640 atomic regions from SNP 180341 to 180941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,386 DEBUG Processing 698/709 atomic regions from SNP 209181 to 209781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,449 DEBUG Processing 488/545 atomic regions from SNP 146169 to 146769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,552 DEBUG Processing 46/519 atomic regions from SNP 13519 to 14119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,561 DEBUG Subchromosome time: 170.46467445290182, subchromosome SNPs: 200651 2025-01-31 09:52:05,562 DEBUG Estimated BADs: [1.18, 14.14, 0.59, 23.57, 2.36, 0.34, 2.36, 4.71, 2.36, 7.07, 2.36, 23.57, 0.59, 2.36, 1.18, 4.71, 2.36, 0.79, 7.07] SNP counts: [29643, 1555, 1648, 923, 3637, 3301, 30003, 34598, 13153, 1315, 7173, 102, 4207, 5162, 14680, 16995, 24869, 6905, 782] SNP IDs counts: [29643, 1555, 1648, 923, 3637, 3301, 30003, 34598, 13153, 1315, 7173, 102, 4207, 5162, 14680, 16995, 24869, 6905, 782] Critical gap: 601524bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 22.06Mbp, 23.26Mbp, 23.77Mbp, 25.80Mbp, 28.06Mbp, 44.65Mbp, 64.15Mbp, 73.25Mbp, 73.94Mbp, 78.16Mbp, 78.21Mbp, 80.84Mbp, 83.75Mbp, 92.48Mbp, 101.69Mbp, 115.39Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:52:05,562 DEBUG chr13 time: 170.46530906797852 s 2025-01-31 09:52:05,605 DEBUG Processing 455/585 atomic regions from SNP 136494 to 137094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,613 DEBUG Processing 603/640 atomic regions from SNP 180641 to 181241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,640 DEBUG Processing 699/709 atomic regions from SNP 209481 to 210081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,648 DEBUG Processing 489/545 atomic regions from SNP 146469 to 147069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,702 DEBUG chr13: Fitting background model for 19 segments 2025-01-31 09:52:05,751 DEBUG Processing 47/519 atomic regions from SNP 13819 to 14419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,824 DEBUG Processing 456/585 atomic regions from SNP 136794 to 137394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:05,852 DEBUG Processing 604/640 atomic regions from SNP 180941 to 181541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:05,854 DEBUG Processing 490/545 atomic regions from SNP 146769 to 147369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,884 DEBUG Processing 700/709 atomic regions from SNP 209781 to 210381 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,942 DEBUG Processing 48/519 atomic regions from SNP 14119 to 14719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,023 DEBUG Processing 457/585 atomic regions from SNP 137094 to 137694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,055 DEBUG Processing 491/545 atomic regions from SNP 147069 to 147669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,083 DEBUG Processing 605/640 atomic regions from SNP 181241 to 181841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,133 DEBUG Processing 49/519 atomic regions from SNP 14419 to 15019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,138 DEBUG Processing 701/709 atomic regions from SNP 210081 to 210681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,216 DEBUG Processing 458/585 atomic regions from SNP 137394 to 137994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,245 DEBUG Processing 492/545 atomic regions from SNP 147369 to 147969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,285 DEBUG Processing 606/640 atomic regions from SNP 181541 to 182141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,327 DEBUG Processing 50/519 atomic regions from SNP 14719 to 15319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,393 DEBUG Processing 702/709 atomic regions from SNP 210381 to 210981 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,438 DEBUG Processing 493/545 atomic regions from SNP 147669 to 148269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,443 DEBUG Processing 459/585 atomic regions from SNP 137694 to 138294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,485 DEBUG Processing 607/640 atomic regions from SNP 181841 to 182441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,514 DEBUG Processing 51/519 atomic regions from SNP 15019 to 15619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,638 DEBUG Processing 494/545 atomic regions from SNP 147969 to 148569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,650 DEBUG Processing 703/709 atomic regions from SNP 210681 to 211281 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,658 DEBUG Processing 460/585 atomic regions from SNP 137994 to 138594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,693 DEBUG Processing 608/640 atomic regions from SNP 182141 to 182741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,706 DEBUG Processing 52/519 atomic regions from SNP 15319 to 15919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,847 DEBUG Processing 495/545 atomic regions from SNP 148269 to 148869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,879 DEBUG Processing 461/585 atomic regions from SNP 138294 to 138894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:06,896 DEBUG Processing 53/519 atomic regions from SNP 15619 to 16219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,898 DEBUG Processing 609/640 atomic regions from SNP 182441 to 183041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:06,900 DEBUG Processing 704/709 atomic regions from SNP 210981 to 211581 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,047 DEBUG Processing 496/545 atomic regions from SNP 148569 to 149169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,086 DEBUG Processing 54/519 atomic regions from SNP 15919 to 16519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,091 DEBUG Processing 462/585 atomic regions from SNP 138594 to 139194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,102 DEBUG Processing 610/640 atomic regions from SNP 182741 to 183341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,140 DEBUG Processing 705/709 atomic regions from SNP 211281 to 211881 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,261 DEBUG Processing 497/545 atomic regions from SNP 148869 to 149469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,276 DEBUG Processing 55/519 atomic regions from SNP 16219 to 16819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,288 DEBUG Processing 463/585 atomic regions from SNP 138894 to 139494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,307 DEBUG Processing 611/640 atomic regions from SNP 183041 to 183641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,361 DEBUG Processing 706/709 atomic regions from SNP 211581 to 212181 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,465 DEBUG Processing 498/545 atomic regions from SNP 149169 to 149769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,481 DEBUG Processing 56/519 atomic regions from SNP 16519 to 17119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,488 DEBUG Processing 464/585 atomic regions from SNP 139194 to 139794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,516 DEBUG Processing 612/640 atomic regions from SNP 183341 to 183941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,584 DEBUG Processing 707/709 atomic regions from SNP 211881 to 212481 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,667 DEBUG Processing 499/545 atomic regions from SNP 149469 to 150069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,698 DEBUG Processing 465/585 atomic regions from SNP 139494 to 140094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,704 DEBUG Processing 57/519 atomic regions from SNP 16819 to 17419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,732 DEBUG Processing 613/640 atomic regions from SNP 183641 to 184241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:07,802 DEBUG Processing 708/709 atomic regions from SNP 212181 to 212781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,878 DEBUG Processing 500/545 atomic regions from SNP 149769 to 150369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,904 DEBUG Processing 58/519 atomic regions from SNP 17119 to 17719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,914 DEBUG Processing 466/585 atomic regions from SNP 139794 to 140394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:07,947 DEBUG Processing 614/640 atomic regions from SNP 183941 to 184541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,024 DEBUG Processing 709/709 atomic regions from SNP 212481 to 213081 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,100 DEBUG Processing 59/519 atomic regions from SNP 17419 to 18019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,107 DEBUG Processing 501/545 atomic regions from SNP 150069 to 150669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,121 DEBUG Processing 467/585 atomic regions from SNP 140094 to 140694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,156 DEBUG Unique SNPs positions in subchromosome 1: 213082 2025-01-31 09:52:08,163 DEBUG Processing 615/640 atomic regions from SNP 184241 to 184841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,292 DEBUG Processing 60/519 atomic regions from SNP 17719 to 18319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,329 DEBUG Processing 468/585 atomic regions from SNP 140394 to 140994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,330 DEBUG Processing 502/545 atomic regions from SNP 150369 to 150969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,377 DEBUG Processing 616/640 atomic regions from SNP 184541 to 185141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,482 DEBUG Processing 61/519 atomic regions from SNP 18019 to 18619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,546 DEBUG Processing 503/545 atomic regions from SNP 150669 to 151269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,548 DEBUG Processing 469/585 atomic regions from SNP 140694 to 141294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,592 DEBUG Processing 617/640 atomic regions from SNP 184841 to 185441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,670 DEBUG Processing 62/519 atomic regions from SNP 18319 to 18919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,762 DEBUG Processing 504/545 atomic regions from SNP 150969 to 151569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,773 DEBUG Processing 470/585 atomic regions from SNP 140994 to 141594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,815 DEBUG Processing 618/640 atomic regions from SNP 185141 to 185741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:08,867 DEBUG Processing 63/519 atomic regions from SNP 18619 to 19219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,979 DEBUG Processing 471/585 atomic regions from SNP 141294 to 141894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:08,990 DEBUG Processing 505/545 atomic regions from SNP 151269 to 151869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,032 DEBUG Processing 619/640 atomic regions from SNP 185441 to 186041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,064 DEBUG Processing 64/519 atomic regions from SNP 18919 to 19519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:09,203 DEBUG Processing 472/585 atomic regions from SNP 141594 to 142194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,228 DEBUG Processing 506/545 atomic regions from SNP 151569 to 152169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,265 DEBUG Processing 620/640 atomic regions from SNP 185741 to 186341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,267 DEBUG Processing 65/519 atomic regions from SNP 19219 to 19819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:09,407 DEBUG Processing 473/585 atomic regions from SNP 141894 to 142494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,464 DEBUG Processing 507/545 atomic regions from SNP 151869 to 152469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,472 DEBUG Processing 66/519 atomic regions from SNP 19519 to 20119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:09,489 DEBUG Processing 621/640 atomic regions from SNP 186041 to 186641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,615 DEBUG Processing 474/585 atomic regions from SNP 142194 to 142794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,669 DEBUG Processing 67/519 atomic regions from SNP 19819 to 20419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:09,691 DEBUG Processing 508/545 atomic regions from SNP 152169 to 152769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,704 DEBUG Processing 622/640 atomic regions from SNP 186341 to 186941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:09,830 DEBUG Processing 475/585 atomic regions from SNP 142494 to 143094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:09,861 DEBUG Processing 68/519 atomic regions from SNP 20119 to 20719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:09,899 DEBUG Processing 509/545 atomic regions from SNP 152469 to 153069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,915 DEBUG Processing 623/640 atomic regions from SNP 186641 to 187241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,057 DEBUG Processing 476/585 atomic regions from SNP 142794 to 143394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,057 DEBUG Processing 69/519 atomic regions from SNP 20419 to 21019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:10,106 DEBUG Processing 510/545 atomic regions from SNP 152769 to 153369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,124 DEBUG Processing 624/640 atomic regions from SNP 186941 to 187541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,255 DEBUG Processing 70/519 atomic regions from SNP 20719 to 21319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:10,276 DEBUG Processing 477/585 atomic regions from SNP 143094 to 143694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,337 DEBUG Processing 511/545 atomic regions from SNP 153069 to 153669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,337 DEBUG Processing 625/640 atomic regions from SNP 187241 to 187841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,451 DEBUG Processing 71/519 atomic regions from SNP 21019 to 21619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:10,490 DEBUG Processing 478/585 atomic regions from SNP 143394 to 143994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,552 DEBUG Processing 626/640 atomic regions from SNP 187541 to 188141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,563 DEBUG Processing 512/545 atomic regions from SNP 153369 to 153969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,647 DEBUG Processing 72/519 atomic regions from SNP 21319 to 21919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:10,702 DEBUG Processing 479/585 atomic regions from SNP 143694 to 144294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,766 DEBUG Processing 627/640 atomic regions from SNP 187841 to 188441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:10,787 DEBUG Processing 513/545 atomic regions from SNP 153669 to 154269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,845 DEBUG Processing 73/519 atomic regions from SNP 21619 to 22219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:10,917 DEBUG Processing 480/585 atomic regions from SNP 143994 to 144594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:10,981 DEBUG Processing 628/640 atomic regions from SNP 188141 to 188741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,006 DEBUG Processing 514/545 atomic regions from SNP 153969 to 154569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,036 DEBUG Processing 74/519 atomic regions from SNP 21919 to 22519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,130 DEBUG Processing 481/585 atomic regions from SNP 144294 to 144894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,199 DEBUG Processing 629/640 atomic regions from SNP 188441 to 189041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,209 DEBUG Processing 515/545 atomic regions from SNP 154269 to 154869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,231 DEBUG Processing 75/519 atomic regions from SNP 22219 to 22819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,342 DEBUG Processing 482/585 atomic regions from SNP 144594 to 145194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,417 DEBUG Processing 630/640 atomic regions from SNP 188741 to 189341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,419 DEBUG Processing 516/545 atomic regions from SNP 154569 to 155169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,431 DEBUG Processing 76/519 atomic regions from SNP 22519 to 23119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,551 DEBUG Processing 483/585 atomic regions from SNP 144894 to 145494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,631 DEBUG Processing 517/545 atomic regions from SNP 154869 to 155469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,632 DEBUG Processing 77/519 atomic regions from SNP 22819 to 23419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,634 DEBUG Processing 631/640 atomic regions from SNP 189041 to 189641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,757 DEBUG Processing 484/585 atomic regions from SNP 145194 to 145794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:11,827 DEBUG Processing 78/519 atomic regions from SNP 23119 to 23719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,841 DEBUG Processing 518/545 atomic regions from SNP 155169 to 155769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,869 DEBUG Processing 632/640 atomic regions from SNP 189341 to 189941 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:11,955 DEBUG Processing 485/585 atomic regions from SNP 145494 to 146094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,016 DEBUG Processing 79/519 atomic regions from SNP 23419 to 24019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,071 DEBUG Processing 519/545 atomic regions from SNP 155469 to 156069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,100 DEBUG Processing 633/640 atomic regions from SNP 189641 to 190241 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,163 DEBUG Processing 486/585 atomic regions from SNP 145794 to 146394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,205 DEBUG Processing 80/519 atomic regions from SNP 23719 to 24319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,301 DEBUG Processing 520/545 atomic regions from SNP 155769 to 156369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,310 DEBUG Processing 634/640 atomic regions from SNP 189941 to 190541 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,378 DEBUG Processing 487/585 atomic regions from SNP 146094 to 146694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,403 DEBUG Processing 81/519 atomic regions from SNP 24019 to 24619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,514 DEBUG Processing 635/640 atomic regions from SNP 190241 to 190841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,521 DEBUG Processing 521/545 atomic regions from SNP 156069 to 156669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,588 DEBUG Processing 488/585 atomic regions from SNP 146394 to 146994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,602 DEBUG Processing 82/519 atomic regions from SNP 24319 to 24919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,718 DEBUG Processing 636/640 atomic regions from SNP 190541 to 191141 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,732 DEBUG Processing 522/545 atomic regions from SNP 156369 to 156969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,793 DEBUG Processing 489/585 atomic regions from SNP 146694 to 147294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:12,793 DEBUG Processing 83/519 atomic regions from SNP 24619 to 25219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,922 DEBUG Processing 637/640 atomic regions from SNP 190841 to 191441 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:12,960 DEBUG Processing 523/545 atomic regions from SNP 156669 to 157269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,986 DEBUG Processing 84/519 atomic regions from SNP 24919 to 25519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,998 DEBUG Processing 490/585 atomic regions from SNP 146994 to 147594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,126 DEBUG Processing 638/640 atomic regions from SNP 191141 to 191741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:13,176 DEBUG Processing 85/519 atomic regions from SNP 25219 to 25819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:13,188 DEBUG Processing 524/545 atomic regions from SNP 156969 to 157569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,207 DEBUG Processing 491/585 atomic regions from SNP 147294 to 147894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,334 DEBUG Processing 639/640 atomic regions from SNP 191441 to 192041 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:13,367 DEBUG Processing 86/519 atomic regions from SNP 25519 to 26119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:13,414 DEBUG Processing 525/545 atomic regions from SNP 157269 to 157869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,416 DEBUG Processing 492/585 atomic regions from SNP 147594 to 148194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,543 DEBUG Processing 640/640 atomic regions from SNP 191741 to 192341 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:13,557 DEBUG Processing 87/519 atomic regions from SNP 25819 to 26419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:13,615 DEBUG Processing 526/545 atomic regions from SNP 157569 to 158169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,622 DEBUG Processing 493/585 atomic regions from SNP 147894 to 148494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,674 DEBUG Unique SNPs positions in subchromosome 1: 192342 2025-01-31 09:52:13,748 DEBUG Processing 88/519 atomic regions from SNP 26119 to 26719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:13,828 DEBUG Processing 527/545 atomic regions from SNP 157869 to 158469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,838 DEBUG Processing 494/585 atomic regions from SNP 148194 to 148794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:13,937 DEBUG Processing 89/519 atomic regions from SNP 26419 to 27019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,033 DEBUG Processing 528/545 atomic regions from SNP 158169 to 158769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,068 DEBUG Processing 495/585 atomic regions from SNP 148494 to 149094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,124 DEBUG Processing 90/519 atomic regions from SNP 26719 to 27319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,233 DEBUG Processing 529/545 atomic regions from SNP 158469 to 159069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,279 DEBUG Processing 496/585 atomic regions from SNP 148794 to 149394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,320 DEBUG Processing 91/519 atomic regions from SNP 27019 to 27619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,425 DEBUG Processing 530/545 atomic regions from SNP 158769 to 159369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,501 DEBUG Processing 497/585 atomic regions from SNP 149094 to 149694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,513 DEBUG Processing 92/519 atomic regions from SNP 27319 to 27919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,618 DEBUG Processing 531/545 atomic regions from SNP 159069 to 159669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,699 DEBUG Processing 93/519 atomic regions from SNP 27619 to 28219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,729 DEBUG Processing 498/585 atomic regions from SNP 149394 to 149994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:14,814 DEBUG Processing 532/545 atomic regions from SNP 159369 to 159969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,879 DEBUG Processing 94/519 atomic regions from SNP 27919 to 28519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,938 DEBUG Processing 499/585 atomic regions from SNP 149694 to 150294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,016 DEBUG Processing 533/545 atomic regions from SNP 159669 to 160269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,065 DEBUG Processing 95/519 atomic regions from SNP 28219 to 28819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:15,136 DEBUG Processing 500/585 atomic regions from SNP 149994 to 150594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,204 DEBUG Subchromosome time: 160.1485102439765, subchromosome SNPs: 192342 2025-01-31 09:52:15,205 DEBUG Estimated BADs: [3.65, 1.82, 0.91, 1.82, 0.91, 3.65, 5.47, 0.91, 3.65, 1.82, 7.30, 1.82] SNP counts: [4612, 40539, 29771, 12695, 15732, 25968, 7332, 18715, 12085, 8492, 5099, 11302] SNP IDs counts: [4612, 40539, 29771, 12695, 15732, 25968, 7332, 18715, 12085, 8492, 5099, 11302] Critical gap: 612814bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.59Mbp, 33.15Mbp, 51.69Mbp, 59.01Mbp, 69.12Mbp, 83.30Mbp, 87.15Mbp, 99.20Mbp, 105.90Mbp, 110.42Mbp, 113.09Mbp, 120.13Mbp] 2025-01-31 09:52:15,205 DEBUG chr12 time: 160.14906483597588 s 2025-01-31 09:52:15,232 DEBUG Processing 534/545 atomic regions from SNP 159969 to 160569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,252 DEBUG Processing 96/519 atomic regions from SNP 28519 to 29119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:15,316 DEBUG chr12: Fitting background model for 12 segments 2025-01-31 09:52:15,338 DEBUG Processing 501/585 atomic regions from SNP 150294 to 150894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,445 DEBUG Processing 97/519 atomic regions from SNP 28819 to 29419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:15,453 DEBUG Processing 535/545 atomic regions from SNP 160269 to 160869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,547 DEBUG Processing 502/585 atomic regions from SNP 150594 to 151194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,637 DEBUG Processing 98/519 atomic regions from SNP 29119 to 29719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:15,649 DEBUG Processing 536/545 atomic regions from SNP 160569 to 161169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,759 DEBUG Processing 503/585 atomic regions from SNP 150894 to 151494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:15,828 DEBUG Processing 99/519 atomic regions from SNP 29419 to 30019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:15,840 DEBUG Processing 537/545 atomic regions from SNP 160869 to 161469 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,970 DEBUG Processing 504/585 atomic regions from SNP 151194 to 151794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,027 DEBUG Processing 100/519 atomic regions from SNP 29719 to 30319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,045 DEBUG Processing 538/545 atomic regions from SNP 161169 to 161769 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,193 DEBUG Processing 505/585 atomic regions from SNP 151494 to 152094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,224 DEBUG Processing 101/519 atomic regions from SNP 30019 to 30619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,261 DEBUG Processing 539/545 atomic regions from SNP 161469 to 162069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,392 DEBUG Processing 506/585 atomic regions from SNP 151794 to 152394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,420 DEBUG Processing 102/519 atomic regions from SNP 30319 to 30919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,472 DEBUG Processing 540/545 atomic regions from SNP 161769 to 162369 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,591 DEBUG Processing 507/585 atomic regions from SNP 152094 to 152694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,605 DEBUG Processing 103/519 atomic regions from SNP 30619 to 31219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,673 DEBUG Processing 541/545 atomic regions from SNP 162069 to 162669 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,783 DEBUG Processing 104/519 atomic regions from SNP 30919 to 31519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,790 DEBUG Processing 508/585 atomic regions from SNP 152394 to 152994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:16,869 DEBUG Processing 542/545 atomic regions from SNP 162369 to 162969 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,970 DEBUG Processing 105/519 atomic regions from SNP 31219 to 31819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:17,007 DEBUG Processing 509/585 atomic regions from SNP 152694 to 153294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,075 DEBUG Processing 543/545 atomic regions from SNP 162669 to 163269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,176 DEBUG Processing 106/519 atomic regions from SNP 31519 to 32119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:17,211 DEBUG Processing 510/585 atomic regions from SNP 152994 to 153594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,277 DEBUG Processing 544/545 atomic regions from SNP 162969 to 163569 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,394 DEBUG Processing 107/519 atomic regions from SNP 31819 to 32419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:17,411 DEBUG Processing 511/585 atomic regions from SNP 153294 to 153894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,472 DEBUG Processing 545/545 atomic regions from SNP 163269 to 163869 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,611 DEBUG Processing 108/519 atomic regions from SNP 32119 to 32719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:17,611 DEBUG Unique SNPs positions in subchromosome 1: 163870 2025-01-31 09:52:17,617 DEBUG Processing 512/585 atomic regions from SNP 153594 to 154194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:17,816 DEBUG Processing 109/519 atomic regions from SNP 32419 to 33019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:17,827 DEBUG Processing 513/585 atomic regions from SNP 153894 to 154494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,026 DEBUG Processing 110/519 atomic regions from SNP 32719 to 33319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:18,035 DEBUG Processing 514/585 atomic regions from SNP 154194 to 154794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,197 DEBUG Subchromosome time: 194.7171294169966, subchromosome SNPs: 213082 2025-01-31 09:52:18,198 DEBUG Estimated BADs: [23.85, 4.77, 0.80, 2.39, 0.40, 2.39, 0.34, 1.19, 19.08, 2.39, 4.77, 2.39, 14.31, 2.39, 4.77, 2.39, 4.77, 2.39, 0.30, 1.19, 4.77, 2.39, 1.19, 7.16] SNP counts: [152, 6870, 18313, 11720, 5406, 14712, 5982, 14571, 195, 17153, 3506, 16274, 3226, 7282, 9004, 5954, 9662, 5892, 3299, 1816, 26992, 4171, 8156, 12774] SNP IDs counts: [152, 6870, 18313, 11720, 5406, 14712, 5982, 14571, 195, 17153, 3506, 16274, 3226, 7282, 9004, 5954, 9662, 5892, 3299, 1816, 26992, 4171, 8156, 12774] Critical gap: 591526bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.89Mbp, 18.34Mbp, 24.88Mbp, 28.30Mbp, 36.60Mbp, 40.25Mbp, 48.77Mbp, 48.88Mbp, 58.30Mbp, 60.17Mbp, 68.97Mbp, 70.66Mbp, 74.83Mbp, 79.58Mbp, 82.76Mbp, 87.97Mbp, 91.19Mbp, 93.18Mbp, 94.18Mbp, 108.50Mbp, 110.78Mbp, 115.22Mbp, 122.08Mbp] 2025-01-31 09:52:18,198 DEBUG chr11 time: 194.7175916909473 s 2025-01-31 09:52:18,230 DEBUG Processing 111/519 atomic regions from SNP 33019 to 33619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:18,238 DEBUG Processing 515/585 atomic regions from SNP 154494 to 155094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,315 DEBUG chr11: Fitting background model for 24 segments 2025-01-31 09:52:18,438 DEBUG Processing 516/585 atomic regions from SNP 154794 to 155394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,442 DEBUG Processing 112/519 atomic regions from SNP 33319 to 33919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:18,635 DEBUG Processing 517/585 atomic regions from SNP 155094 to 155694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,651 DEBUG Processing 113/519 atomic regions from SNP 33619 to 34219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:18,836 DEBUG Processing 518/585 atomic regions from SNP 155394 to 155994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:18,861 DEBUG Processing 114/519 atomic regions from SNP 33919 to 34519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,041 DEBUG Processing 519/585 atomic regions from SNP 155694 to 156294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,064 DEBUG Processing 115/519 atomic regions from SNP 34219 to 34819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,102 DEBUG Subchromosome time: 129.11749983893242, subchromosome SNPs: 163870 2025-01-31 09:52:19,102 DEBUG Estimated BADs: [6.57, 1.10, 4.38, 0.73, 4.38, 1.10, 0.44, 2.19, 1.10, 2.19, 6.57] SNP counts: [4314, 3602, 30945, 5692, 19814, 23085, 4339, 8581, 43518, 4475, 15505] SNP IDs counts: [4314, 3602, 30945, 5692, 19814, 23085, 4339, 8581, 43518, 4475, 15505] Critical gap: 538868bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.77Mbp, 7.71Mbp, 25.02Mbp, 28.46Mbp, 39.17Mbp, 52.86Mbp, 55.82Mbp, 61.06Mbp, 87.39Mbp, 89.89Mbp, 98.21Mbp] 2025-01-31 09:52:19,102 DEBUG chr16 time: 129.11792843195144 s 2025-01-31 09:52:19,200 DEBUG chr16: Fitting background model for 11 segments 2025-01-31 09:52:19,247 DEBUG Processing 520/585 atomic regions from SNP 155994 to 156594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,265 DEBUG Processing 116/519 atomic regions from SNP 34519 to 35119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,458 DEBUG Processing 521/585 atomic regions from SNP 156294 to 156894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,472 DEBUG Processing 117/519 atomic regions from SNP 34819 to 35419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,668 DEBUG Processing 118/519 atomic regions from SNP 35119 to 35719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,674 DEBUG Processing 522/585 atomic regions from SNP 156594 to 157194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:19,862 DEBUG Processing 119/519 atomic regions from SNP 35419 to 36019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,891 DEBUG Processing 523/585 atomic regions from SNP 156894 to 157494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,064 DEBUG Processing 120/519 atomic regions from SNP 35719 to 36319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,106 DEBUG Processing 524/585 atomic regions from SNP 157194 to 157794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,282 DEBUG Processing 121/519 atomic regions from SNP 36019 to 36619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,312 DEBUG Processing 525/585 atomic regions from SNP 157494 to 158094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,500 DEBUG Processing 122/519 atomic regions from SNP 36319 to 36919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,517 DEBUG Processing 526/585 atomic regions from SNP 157794 to 158394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,712 DEBUG Processing 123/519 atomic regions from SNP 36619 to 37219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,724 DEBUG Processing 527/585 atomic regions from SNP 158094 to 158694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:20,918 DEBUG Processing 124/519 atomic regions from SNP 36919 to 37519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,937 DEBUG Processing 528/585 atomic regions from SNP 158394 to 158994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,111 DEBUG Processing 125/519 atomic regions from SNP 37219 to 37819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:21,151 DEBUG Processing 529/585 atomic regions from SNP 158694 to 159294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,320 DEBUG Processing 126/519 atomic regions from SNP 37519 to 38119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:21,368 DEBUG Processing 530/585 atomic regions from SNP 158994 to 159594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,537 DEBUG Processing 127/519 atomic regions from SNP 37819 to 38419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:21,585 DEBUG Processing 531/585 atomic regions from SNP 159294 to 159894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,759 DEBUG Processing 128/519 atomic regions from SNP 38119 to 38719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:21,803 DEBUG Processing 532/585 atomic regions from SNP 159594 to 160194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:21,975 DEBUG Processing 129/519 atomic regions from SNP 38419 to 39019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,019 DEBUG Processing 533/585 atomic regions from SNP 159894 to 160494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,189 DEBUG Processing 130/519 atomic regions from SNP 38719 to 39319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,232 DEBUG Processing 534/585 atomic regions from SNP 160194 to 160794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,387 DEBUG Processing 131/519 atomic regions from SNP 39019 to 39619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,449 DEBUG Processing 535/585 atomic regions from SNP 160494 to 161094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,613 DEBUG Processing 132/519 atomic regions from SNP 39319 to 39919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,664 DEBUG Processing 536/585 atomic regions from SNP 160794 to 161394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:22,827 DEBUG Processing 133/519 atomic regions from SNP 39619 to 40219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,879 DEBUG Processing 537/585 atomic regions from SNP 161094 to 161694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,040 DEBUG Processing 134/519 atomic regions from SNP 39919 to 40519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,089 DEBUG Processing 538/585 atomic regions from SNP 161394 to 161994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,242 DEBUG Processing 135/519 atomic regions from SNP 40219 to 40819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,298 DEBUG Processing 539/585 atomic regions from SNP 161694 to 162294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,451 DEBUG Processing 136/519 atomic regions from SNP 40519 to 41119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,505 DEBUG Processing 540/585 atomic regions from SNP 161994 to 162594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,668 DEBUG Processing 137/519 atomic regions from SNP 40819 to 41419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,710 DEBUG Processing 541/585 atomic regions from SNP 162294 to 162894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:23,866 DEBUG Processing 138/519 atomic regions from SNP 41119 to 41719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,919 DEBUG Processing 542/585 atomic regions from SNP 162594 to 163194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,076 DEBUG Processing 139/519 atomic regions from SNP 41419 to 42019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,134 DEBUG Processing 543/585 atomic regions from SNP 162894 to 163494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,298 DEBUG Processing 140/519 atomic regions from SNP 41719 to 42319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,350 DEBUG Processing 544/585 atomic regions from SNP 163194 to 163794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,514 DEBUG Processing 141/519 atomic regions from SNP 42019 to 42619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,566 DEBUG Processing 545/585 atomic regions from SNP 163494 to 164094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,721 DEBUG Processing 142/519 atomic regions from SNP 42319 to 42919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,782 DEBUG Processing 546/585 atomic regions from SNP 163794 to 164394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:24,938 DEBUG Processing 143/519 atomic regions from SNP 42619 to 43219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,987 DEBUG Processing 547/585 atomic regions from SNP 164094 to 164694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,166 DEBUG Processing 144/519 atomic regions from SNP 42919 to 43519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,194 DEBUG Processing 548/585 atomic regions from SNP 164394 to 164994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,378 DEBUG Processing 145/519 atomic regions from SNP 43219 to 43819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,400 DEBUG Processing 549/585 atomic regions from SNP 164694 to 165294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,588 DEBUG Processing 146/519 atomic regions from SNP 43519 to 44119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,613 DEBUG Processing 550/585 atomic regions from SNP 164994 to 165594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,790 DEBUG Processing 147/519 atomic regions from SNP 43819 to 44419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,829 DEBUG Processing 551/585 atomic regions from SNP 165294 to 165894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:25,986 DEBUG Processing 148/519 atomic regions from SNP 44119 to 44719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,037 DEBUG Processing 552/585 atomic regions from SNP 165594 to 166194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,180 DEBUG Processing 149/519 atomic regions from SNP 44419 to 45019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,254 DEBUG Processing 553/585 atomic regions from SNP 165894 to 166494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,368 DEBUG Processing 150/519 atomic regions from SNP 44719 to 45319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,483 DEBUG Processing 554/585 atomic regions from SNP 166194 to 166794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,553 DEBUG Processing 151/519 atomic regions from SNP 45019 to 45619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,703 DEBUG Processing 555/585 atomic regions from SNP 166494 to 167094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:26,745 DEBUG Processing 152/519 atomic regions from SNP 45319 to 45919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,939 DEBUG Processing 153/519 atomic regions from SNP 45619 to 46219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,941 DEBUG Processing 556/585 atomic regions from SNP 166794 to 167394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,131 DEBUG Processing 154/519 atomic regions from SNP 45919 to 46519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,169 DEBUG Processing 557/585 atomic regions from SNP 167094 to 167694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,321 DEBUG Processing 155/519 atomic regions from SNP 46219 to 46819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,383 DEBUG Processing 558/585 atomic regions from SNP 167394 to 167994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,510 DEBUG Processing 156/519 atomic regions from SNP 46519 to 47119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,602 DEBUG Processing 559/585 atomic regions from SNP 167694 to 168294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,712 DEBUG Processing 157/519 atomic regions from SNP 46819 to 47419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,822 DEBUG Processing 560/585 atomic regions from SNP 167994 to 168594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:27,907 DEBUG Processing 158/519 atomic regions from SNP 47119 to 47719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,053 DEBUG Processing 561/585 atomic regions from SNP 168294 to 168894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,090 DEBUG Processing 159/519 atomic regions from SNP 47419 to 48019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,264 DEBUG Processing 562/585 atomic regions from SNP 168594 to 169194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,276 DEBUG Processing 160/519 atomic regions from SNP 47719 to 48319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,467 DEBUG Processing 161/519 atomic regions from SNP 48019 to 48619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,473 DEBUG Processing 563/585 atomic regions from SNP 168894 to 169494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,661 DEBUG Processing 162/519 atomic regions from SNP 48319 to 48919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,687 DEBUG Processing 564/585 atomic regions from SNP 169194 to 169794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:28,854 DEBUG Processing 163/519 atomic regions from SNP 48619 to 49219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,906 DEBUG Processing 565/585 atomic regions from SNP 169494 to 170094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,051 DEBUG Processing 164/519 atomic regions from SNP 48919 to 49519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,136 DEBUG Processing 566/585 atomic regions from SNP 169794 to 170394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,237 DEBUG Processing 165/519 atomic regions from SNP 49219 to 49819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,343 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:52:29,368 DEBUG Processing 567/585 atomic regions from SNP 170094 to 170694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,416 DEBUG Processing 166/519 atomic regions from SNP 49519 to 50119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,585 DEBUG Processing 568/585 atomic regions from SNP 170394 to 170994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,597 DEBUG Processing 167/519 atomic regions from SNP 49819 to 50419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,792 DEBUG Processing 168/519 atomic regions from SNP 50119 to 50719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,801 DEBUG Processing 569/585 atomic regions from SNP 170694 to 171294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:29,983 DEBUG Processing 169/519 atomic regions from SNP 50419 to 51019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,009 DEBUG Processing 570/585 atomic regions from SNP 170994 to 171594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,203 DEBUG Processing 170/519 atomic regions from SNP 50719 to 51319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,218 DEBUG Processing 571/585 atomic regions from SNP 171294 to 171894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,422 DEBUG Processing 572/585 atomic regions from SNP 171594 to 172194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,433 DEBUG Processing 171/519 atomic regions from SNP 51019 to 51619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,624 DEBUG Processing 573/585 atomic regions from SNP 171894 to 172494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,665 DEBUG Processing 172/519 atomic regions from SNP 51319 to 51919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,827 DEBUG Processing 574/585 atomic regions from SNP 172194 to 172794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:30,877 DEBUG Processing 173/519 atomic regions from SNP 51619 to 52219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,031 DEBUG Processing 575/585 atomic regions from SNP 172494 to 173094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,073 DEBUG Processing 174/519 atomic regions from SNP 51919 to 52519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,257 DEBUG Processing 576/585 atomic regions from SNP 172794 to 173394 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,294 DEBUG Processing 175/519 atomic regions from SNP 52219 to 52819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,481 DEBUG Processing 577/585 atomic regions from SNP 173094 to 173694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,512 DEBUG Processing 176/519 atomic regions from SNP 52519 to 53119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,734 DEBUG Processing 177/519 atomic regions from SNP 52819 to 53419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,735 DEBUG Processing 578/585 atomic regions from SNP 173394 to 173994 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:31,783 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:52:31,962 DEBUG Processing 178/519 atomic regions from SNP 53119 to 53719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,967 DEBUG Processing 579/585 atomic regions from SNP 173694 to 174294 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,182 DEBUG Processing 580/585 atomic regions from SNP 173994 to 174594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,197 DEBUG Processing 179/519 atomic regions from SNP 53419 to 54019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,399 DEBUG Processing 581/585 atomic regions from SNP 174294 to 174894 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,403 DEBUG Processing 180/519 atomic regions from SNP 53719 to 54319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,609 DEBUG Processing 181/519 atomic regions from SNP 54019 to 54619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,615 DEBUG Processing 582/585 atomic regions from SNP 174594 to 175194 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,817 DEBUG Processing 182/519 atomic regions from SNP 54319 to 54919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,854 DEBUG Processing 583/585 atomic regions from SNP 174894 to 175494 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:32,904 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:52:33,035 DEBUG Processing 183/519 atomic regions from SNP 54619 to 55219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,094 DEBUG Processing 584/585 atomic regions from SNP 175194 to 175794 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:33,237 DEBUG Processing 184/519 atomic regions from SNP 54919 to 55519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,308 DEBUG Processing 585/585 atomic regions from SNP 175494 to 176094 for chr15 (subchromosome 1 of 1). 2025-01-31 09:52:33,424 DEBUG Processing 185/519 atomic regions from SNP 55219 to 55819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,443 DEBUG Unique SNPs positions in subchromosome 1: 176095 2025-01-31 09:52:33,621 DEBUG Processing 186/519 atomic regions from SNP 55519 to 56119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,810 DEBUG Processing 187/519 atomic regions from SNP 55819 to 56419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,998 DEBUG Processing 188/519 atomic regions from SNP 56119 to 56719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,184 DEBUG Processing 189/519 atomic regions from SNP 56419 to 57019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,368 DEBUG Processing 190/519 atomic regions from SNP 56719 to 57319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,546 DEBUG Processing 191/519 atomic regions from SNP 57019 to 57619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,729 DEBUG Processing 192/519 atomic regions from SNP 57319 to 57919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,919 DEBUG Processing 193/519 atomic regions from SNP 57619 to 58219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,111 DEBUG Processing 194/519 atomic regions from SNP 57919 to 58519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,302 DEBUG Processing 195/519 atomic regions from SNP 58219 to 58819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,486 DEBUG Processing 196/519 atomic regions from SNP 58519 to 59119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,664 DEBUG Processing 197/519 atomic regions from SNP 58819 to 59419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,849 DEBUG Processing 198/519 atomic regions from SNP 59119 to 59719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,038 DEBUG Processing 199/519 atomic regions from SNP 59419 to 60019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,225 DEBUG Processing 200/519 atomic regions from SNP 59719 to 60319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,427 DEBUG Processing 201/519 atomic regions from SNP 60019 to 60619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,622 DEBUG Processing 202/519 atomic regions from SNP 60319 to 60919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,810 DEBUG Processing 203/519 atomic regions from SNP 60619 to 61219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,986 DEBUG Processing 204/519 atomic regions from SNP 60919 to 61519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,167 DEBUG Processing 205/519 atomic regions from SNP 61219 to 61819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,244 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:52:37,245 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:52:37,357 DEBUG Processing 206/519 atomic regions from SNP 61519 to 62119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,544 DEBUG Processing 207/519 atomic regions from SNP 61819 to 62419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,734 DEBUG Processing 208/519 atomic regions from SNP 62119 to 62719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,921 DEBUG Processing 209/519 atomic regions from SNP 62419 to 63019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,974 DEBUG Subchromosome time: 147.30646789306775, subchromosome SNPs: 176095 2025-01-31 09:52:37,974 DEBUG Estimated BADs: [2.94, 8.82, 2.94, 0.42, 1.47, 2.94, 0.33, 0.98, 2.94, 0.98, 2.94, 8.82, 2.94, 8.82, 0.98] SNP counts: [3403, 18702, 13254, 2947, 14450, 19581, 7508, 12004, 5137, 22009, 5225, 12158, 29673, 9189, 855] SNP IDs counts: [3403, 18702, 13254, 2947, 14450, 19581, 7508, 12004, 5137, 22009, 5225, 12158, 29673, 9189, 855] Critical gap: 552093bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 15.51Mbp, 23.13Mbp, 25.10Mbp, 33.56Mbp, 44.85Mbp, 50.01Mbp, 57.15Mbp, 59.94Mbp, 73.02Mbp, 75.88Mbp, 82.38Mbp, 98.51Mbp, 103.35Mbp, 104.04Mbp] 2025-01-31 09:52:37,974 DEBUG chr15 time: 147.30690069904085 s 2025-01-31 09:52:38,084 DEBUG chr15: Fitting background model for 15 segments 2025-01-31 09:52:38,112 DEBUG Processing 210/519 atomic regions from SNP 62719 to 63319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,294 DEBUG Processing 211/519 atomic regions from SNP 63019 to 63619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,478 DEBUG Processing 212/519 atomic regions from SNP 63319 to 63919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,665 DEBUG Processing 213/519 atomic regions from SNP 63619 to 64219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,861 DEBUG Processing 214/519 atomic regions from SNP 63919 to 64519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,926 DEBUG chrY total SNP count: 73 2025-01-31 09:52:38,926 DEBUG chrY length: 91744698 2025-01-31 09:52:38,926 DEBUG ----------------------------------------- 2025-01-31 09:52:38,926 INFO Processing SNPs in chrY 2025-01-31 09:52:39,052 DEBUG Processing 215/519 atomic regions from SNP 64219 to 64819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,237 DEBUG Processing 216/519 atomic regions from SNP 64519 to 65119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,427 DEBUG Processing 217/519 atomic regions from SNP 64819 to 65419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,611 DEBUG Processing 218/519 atomic regions from SNP 65119 to 65719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,797 DEBUG Processing 219/519 atomic regions from SNP 65419 to 66019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,987 DEBUG Processing 220/519 atomic regions from SNP 65719 to 66319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,067 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:52:40,068 DEBUG chr19: Signal quantile: 0.993. signal threshold: 19. Best RMSEA: 0.024 2025-01-31 09:52:40,183 DEBUG Processing 221/519 atomic regions from SNP 66019 to 66619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,374 DEBUG Processing 222/519 atomic regions from SNP 66319 to 66919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,558 DEBUG Processing 223/519 atomic regions from SNP 66619 to 67219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,594 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:52:40,595 DEBUG chr18: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.042 2025-01-31 09:52:40,744 DEBUG Processing 224/519 atomic regions from SNP 66919 to 67519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,936 DEBUG Processing 225/519 atomic regions from SNP 67219 to 67819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,123 DEBUG Processing 226/519 atomic regions from SNP 67519 to 68119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,225 DEBUG chr19 total SNP count: 103718 2025-01-31 09:52:41,226 DEBUG chr19 length: 61431566 2025-01-31 09:52:41,226 DEBUG ----------------------------------------- 2025-01-31 09:52:41,226 INFO Processing SNPs in chr19 2025-01-31 09:52:41,307 DEBUG Processing 227/519 atomic regions from SNP 67819 to 68419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,329 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 103718)] 2025-01-31 09:52:41,399 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:41,490 DEBUG Processing 228/519 atomic regions from SNP 68119 to 68719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,675 DEBUG Processing 229/519 atomic regions from SNP 68419 to 69019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,855 DEBUG Processing 230/519 atomic regions from SNP 68719 to 69319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,039 DEBUG Processing 231/519 atomic regions from SNP 69019 to 69619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,134 DEBUG chr18 total SNP count: 151278 2025-01-31 09:52:42,135 DEBUG chr18 length: 90702639 2025-01-31 09:52:42,135 DEBUG ----------------------------------------- 2025-01-31 09:52:42,135 INFO Processing SNPs in chr18 2025-01-31 09:52:42,230 DEBUG Processing 232/519 atomic regions from SNP 69319 to 69919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,284 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 151278)] 2025-01-31 09:52:42,386 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:42,419 DEBUG Processing 233/519 atomic regions from SNP 69619 to 70219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,634 DEBUG Processing 234/519 atomic regions from SNP 69919 to 70519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,846 DEBUG Processing 235/519 atomic regions from SNP 70219 to 70819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,032 DEBUG Processing 236/519 atomic regions from SNP 70519 to 71119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,241 DEBUG Processing 237/519 atomic regions from SNP 70819 to 71419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,442 DEBUG Processing 238/519 atomic regions from SNP 71119 to 71719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,635 DEBUG Processing 239/519 atomic regions from SNP 71419 to 72019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,819 DEBUG Processing 240/519 atomic regions from SNP 71719 to 72319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,029 DEBUG Processing 241/519 atomic regions from SNP 72019 to 72619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,240 DEBUG Processing 242/519 atomic regions from SNP 72319 to 72919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,438 DEBUG Processing 243/519 atomic regions from SNP 72619 to 73219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,624 DEBUG Processing 244/519 atomic regions from SNP 72919 to 73519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,805 DEBUG Processing 245/519 atomic regions from SNP 73219 to 73819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,000 DEBUG Processing 246/519 atomic regions from SNP 73519 to 74119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,211 DEBUG Processing 247/519 atomic regions from SNP 73819 to 74419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,415 DEBUG Processing 248/519 atomic regions from SNP 74119 to 74719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,619 DEBUG Processing 249/519 atomic regions from SNP 74419 to 75019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,819 DEBUG Processing 250/519 atomic regions from SNP 74719 to 75319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,003 DEBUG Processing 251/519 atomic regions from SNP 75019 to 75619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,191 DEBUG Processing 252/519 atomic regions from SNP 75319 to 75919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,375 DEBUG Processing 253/519 atomic regions from SNP 75619 to 76219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,555 DEBUG Processing 254/519 atomic regions from SNP 75919 to 76519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,737 DEBUG Processing 255/519 atomic regions from SNP 76219 to 76819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,921 DEBUG Processing 256/519 atomic regions from SNP 76519 to 77119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,100 DEBUG Processing 257/519 atomic regions from SNP 76819 to 77419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,288 DEBUG Processing 258/519 atomic regions from SNP 77119 to 77719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,476 DEBUG Processing 259/519 atomic regions from SNP 77419 to 78019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,660 DEBUG Processing 260/519 atomic regions from SNP 77719 to 78319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,841 DEBUG Processing 261/519 atomic regions from SNP 78019 to 78619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,024 DEBUG Processing 262/519 atomic regions from SNP 78319 to 78919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,217 DEBUG Processing 263/519 atomic regions from SNP 78619 to 79219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,403 DEBUG Processing 264/519 atomic regions from SNP 78919 to 79519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,589 DEBUG Processing 265/519 atomic regions from SNP 79219 to 79819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,777 DEBUG Processing 266/519 atomic regions from SNP 79519 to 80119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,959 DEBUG Processing 267/519 atomic regions from SNP 79819 to 80419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,135 DEBUG Processing 268/519 atomic regions from SNP 80119 to 80719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,315 DEBUG Processing 269/519 atomic regions from SNP 80419 to 81019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,498 DEBUG Processing 270/519 atomic regions from SNP 80719 to 81319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,685 DEBUG Processing 271/519 atomic regions from SNP 81019 to 81619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,876 DEBUG Processing 272/519 atomic regions from SNP 81319 to 81919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,069 DEBUG Processing 273/519 atomic regions from SNP 81619 to 82219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,249 DEBUG Processing 274/519 atomic regions from SNP 81919 to 82519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,429 DEBUG Processing 275/519 atomic regions from SNP 82219 to 82819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,610 DEBUG Processing 276/519 atomic regions from SNP 82519 to 83119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,794 DEBUG Processing 277/519 atomic regions from SNP 82819 to 83419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,977 DEBUG Processing 278/519 atomic regions from SNP 83119 to 83719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,161 DEBUG Processing 279/519 atomic regions from SNP 83419 to 84019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,342 DEBUG Processing 280/519 atomic regions from SNP 83719 to 84319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,524 DEBUG Processing 281/519 atomic regions from SNP 84019 to 84619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,716 DEBUG Processing 282/519 atomic regions from SNP 84319 to 84919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,907 DEBUG Processing 283/519 atomic regions from SNP 84619 to 85219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,101 DEBUG Processing 284/519 atomic regions from SNP 84919 to 85519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,286 DEBUG Processing 285/519 atomic regions from SNP 85219 to 85819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,465 DEBUG Processing 286/519 atomic regions from SNP 85519 to 86119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,644 DEBUG Processing 287/519 atomic regions from SNP 85819 to 86419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,832 DEBUG Processing 288/519 atomic regions from SNP 86119 to 86719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,019 DEBUG Processing 289/519 atomic regions from SNP 86419 to 87019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,205 DEBUG Processing 290/519 atomic regions from SNP 86719 to 87319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,389 DEBUG Processing 291/519 atomic regions from SNP 87019 to 87619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,575 DEBUG Processing 292/519 atomic regions from SNP 87319 to 87919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,765 DEBUG Processing 293/519 atomic regions from SNP 87619 to 88219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,847 DEBUG Segmenting atomic regions: 2025-01-31 09:52:53,893 DEBUG Processing 1/344 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:53,950 DEBUG Processing 294/519 atomic regions from SNP 87919 to 88519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,096 DEBUG Processing 2/344 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:54,159 DEBUG Processing 295/519 atomic regions from SNP 88219 to 88819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,286 DEBUG Processing 3/344 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:54,380 DEBUG Processing 296/519 atomic regions from SNP 88519 to 89119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,486 DEBUG Processing 4/344 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:54,598 DEBUG Processing 297/519 atomic regions from SNP 88819 to 89419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,683 DEBUG Processing 5/344 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:54,802 DEBUG Processing 298/519 atomic regions from SNP 89119 to 89719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,885 DEBUG Processing 6/344 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,020 DEBUG Processing 299/519 atomic regions from SNP 89419 to 90019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,094 DEBUG Processing 7/344 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,237 DEBUG Processing 300/519 atomic regions from SNP 89719 to 90319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,294 DEBUG Processing 8/344 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,438 DEBUG Processing 301/519 atomic regions from SNP 90019 to 90619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,492 DEBUG Processing 9/344 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,647 DEBUG Processing 302/519 atomic regions from SNP 90319 to 90919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,694 DEBUG Processing 10/344 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,839 DEBUG Processing 303/519 atomic regions from SNP 90619 to 91219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,879 DEBUG Processing 11/344 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,021 DEBUG Processing 304/519 atomic regions from SNP 90919 to 91519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,067 DEBUG Processing 12/344 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,205 DEBUG Processing 305/519 atomic regions from SNP 91219 to 91819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,268 DEBUG Processing 13/344 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,390 DEBUG Processing 306/519 atomic regions from SNP 91519 to 92119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,455 DEBUG Processing 14/344 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,579 DEBUG Processing 307/519 atomic regions from SNP 91819 to 92419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,661 DEBUG Processing 15/344 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,766 DEBUG Processing 308/519 atomic regions from SNP 92119 to 92719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,875 DEBUG Processing 16/344 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,955 DEBUG Processing 309/519 atomic regions from SNP 92419 to 93019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,085 DEBUG Processing 17/344 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,139 DEBUG Processing 310/519 atomic regions from SNP 92719 to 93319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,300 DEBUG Processing 18/344 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,324 DEBUG Processing 311/519 atomic regions from SNP 93019 to 93619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,507 DEBUG Processing 312/519 atomic regions from SNP 93319 to 93919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,521 DEBUG Processing 19/344 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,684 DEBUG Processing 313/519 atomic regions from SNP 93619 to 94219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,738 DEBUG Processing 20/344 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,866 DEBUG Processing 314/519 atomic regions from SNP 93919 to 94519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,948 DEBUG Processing 21/344 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,051 DEBUG Processing 315/519 atomic regions from SNP 94219 to 94819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,132 DEBUG Processing 22/344 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,242 DEBUG Processing 316/519 atomic regions from SNP 94519 to 95119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,312 DEBUG Processing 23/344 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,425 DEBUG Processing 317/519 atomic regions from SNP 94819 to 95419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,530 DEBUG Processing 24/344 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,605 DEBUG Processing 318/519 atomic regions from SNP 95119 to 95719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,742 DEBUG Processing 25/344 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,788 DEBUG Processing 319/519 atomic regions from SNP 95419 to 96019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,952 DEBUG Processing 26/344 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,974 DEBUG Processing 320/519 atomic regions from SNP 95719 to 96319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,150 DEBUG Processing 27/344 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,162 DEBUG Processing 321/519 atomic regions from SNP 96019 to 96619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,336 DEBUG Processing 28/344 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,351 DEBUG Processing 322/519 atomic regions from SNP 96319 to 96919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,516 DEBUG Processing 29/344 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,545 DEBUG Processing 323/519 atomic regions from SNP 96619 to 97219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,703 DEBUG Processing 30/344 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,742 DEBUG Processing 324/519 atomic regions from SNP 96919 to 97519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,881 DEBUG Processing 31/344 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,930 DEBUG Processing 325/519 atomic regions from SNP 97219 to 97819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,055 DEBUG Processing 32/344 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,111 DEBUG Processing 326/519 atomic regions from SNP 97519 to 98119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,246 DEBUG Processing 33/344 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,291 DEBUG Processing 327/519 atomic regions from SNP 97819 to 98419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,463 DEBUG Processing 34/344 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,475 DEBUG Processing 328/519 atomic regions from SNP 98119 to 98719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,630 DEBUG Segmenting atomic regions: 2025-01-31 09:53:00,663 DEBUG Processing 329/519 atomic regions from SNP 98419 to 99019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,678 DEBUG Processing 35/344 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,696 DEBUG Processing 1/503 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:00,858 DEBUG Processing 330/519 atomic regions from SNP 98719 to 99319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,864 DEBUG Processing 36/344 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,886 DEBUG Processing 2/503 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,043 DEBUG Processing 37/344 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,061 DEBUG Processing 331/519 atomic regions from SNP 99019 to 99619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,082 DEBUG Processing 3/503 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,226 DEBUG Processing 38/344 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,260 DEBUG Processing 332/519 atomic regions from SNP 99319 to 99919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,276 DEBUG Processing 4/503 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,412 DEBUG Processing 39/344 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,457 DEBUG Processing 333/519 atomic regions from SNP 99619 to 100219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,475 DEBUG Processing 5/503 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,613 DEBUG Processing 40/344 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,651 DEBUG Processing 334/519 atomic regions from SNP 99919 to 100519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,670 DEBUG Processing 6/503 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,814 DEBUG Processing 41/344 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,838 DEBUG Processing 335/519 atomic regions from SNP 100219 to 100819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,865 DEBUG Processing 7/503 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,001 DEBUG Processing 42/344 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,029 DEBUG Processing 336/519 atomic regions from SNP 100519 to 101119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,053 DEBUG Processing 8/503 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,190 DEBUG Processing 43/344 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,223 DEBUG Processing 337/519 atomic regions from SNP 100819 to 101419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,244 DEBUG Processing 9/503 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,387 DEBUG Processing 44/344 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,421 DEBUG Processing 338/519 atomic regions from SNP 101119 to 101719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,440 DEBUG Processing 10/503 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,564 DEBUG Processing 45/344 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,619 DEBUG Processing 339/519 atomic regions from SNP 101419 to 102019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,638 DEBUG Processing 11/503 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,731 DEBUG Processing 46/344 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,819 DEBUG Processing 340/519 atomic regions from SNP 101719 to 102319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,834 DEBUG Processing 12/503 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,904 DEBUG Processing 47/344 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,009 DEBUG Processing 341/519 atomic regions from SNP 102019 to 102619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,030 DEBUG Processing 13/503 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,081 DEBUG Processing 48/344 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,197 DEBUG Processing 342/519 atomic regions from SNP 102319 to 102919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,247 DEBUG Processing 14/503 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,254 DEBUG Processing 49/344 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,384 DEBUG Processing 343/519 atomic regions from SNP 102619 to 103219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,424 DEBUG Processing 50/344 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,438 DEBUG Processing 15/503 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,568 DEBUG Processing 344/519 atomic regions from SNP 102919 to 103519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,606 DEBUG Processing 51/344 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,621 DEBUG Processing 16/503 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,757 DEBUG Processing 345/519 atomic regions from SNP 103219 to 103819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,800 DEBUG Processing 52/344 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,805 DEBUG Processing 17/503 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,949 DEBUG Processing 346/519 atomic regions from SNP 103519 to 104119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,974 DEBUG Processing 53/344 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,009 DEBUG Processing 18/503 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,140 DEBUG Processing 347/519 atomic regions from SNP 103819 to 104419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,149 DEBUG Processing 54/344 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,222 DEBUG Processing 19/503 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,321 DEBUG Processing 55/344 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,324 DEBUG Processing 348/519 atomic regions from SNP 104119 to 104719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,406 DEBUG Processing 20/503 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,488 DEBUG Processing 56/344 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,504 DEBUG Processing 349/519 atomic regions from SNP 104419 to 105019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,592 DEBUG Processing 21/503 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,658 DEBUG Processing 57/344 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,685 DEBUG Processing 350/519 atomic regions from SNP 104719 to 105319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,773 DEBUG Processing 22/503 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,830 DEBUG Processing 58/344 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,871 DEBUG Processing 351/519 atomic regions from SNP 105019 to 105619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,956 DEBUG Processing 23/503 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,002 DEBUG Processing 59/344 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,062 DEBUG Processing 352/519 atomic regions from SNP 105319 to 105919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,138 DEBUG Processing 24/503 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,163 DEBUG Processing 60/344 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,260 DEBUG Processing 353/519 atomic regions from SNP 105619 to 106219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,321 DEBUG Processing 25/503 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,334 DEBUG Processing 61/344 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,455 DEBUG Processing 354/519 atomic regions from SNP 105919 to 106519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,503 DEBUG Processing 26/503 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,506 DEBUG Processing 62/344 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,633 DEBUG Processing 355/519 atomic regions from SNP 106219 to 106819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,667 DEBUG Processing 63/344 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,683 DEBUG Processing 27/503 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,817 DEBUG Processing 356/519 atomic regions from SNP 106519 to 107119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,833 DEBUG Processing 64/344 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,863 DEBUG Processing 28/503 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,998 DEBUG Processing 357/519 atomic regions from SNP 106819 to 107419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,010 DEBUG Processing 65/344 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,046 DEBUG Processing 29/503 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,184 DEBUG Processing 358/519 atomic regions from SNP 107119 to 107719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,197 DEBUG Processing 66/344 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,234 DEBUG Processing 30/503 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,367 DEBUG Processing 67/344 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,375 DEBUG Processing 359/519 atomic regions from SNP 107419 to 108019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,430 DEBUG Processing 31/503 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,534 DEBUG Processing 68/344 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,559 DEBUG Processing 360/519 atomic regions from SNP 107719 to 108319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,614 DEBUG Processing 32/503 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,713 DEBUG Processing 69/344 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,750 DEBUG Processing 361/519 atomic regions from SNP 108019 to 108619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,802 DEBUG Processing 33/503 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,889 DEBUG Processing 70/344 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,937 DEBUG Processing 362/519 atomic regions from SNP 108319 to 108919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,993 DEBUG Processing 34/503 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,061 DEBUG Processing 71/344 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,123 DEBUG Processing 363/519 atomic regions from SNP 108619 to 109219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,180 DEBUG Processing 35/503 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,232 DEBUG Processing 72/344 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,304 DEBUG Processing 364/519 atomic regions from SNP 108919 to 109519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,363 DEBUG Processing 36/503 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,402 DEBUG Processing 73/344 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,487 DEBUG Processing 365/519 atomic regions from SNP 109219 to 109819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,546 DEBUG Processing 37/503 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,566 DEBUG Processing 74/344 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,671 DEBUG Processing 366/519 atomic regions from SNP 109519 to 110119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,730 DEBUG Processing 38/503 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,737 DEBUG Processing 75/344 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,851 DEBUG Processing 367/519 atomic regions from SNP 109819 to 110419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,911 DEBUG Processing 76/344 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,918 DEBUG Processing 39/503 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,029 DEBUG Processing 368/519 atomic regions from SNP 110119 to 110719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,081 DEBUG Processing 77/344 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,104 DEBUG Processing 40/503 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,209 DEBUG Processing 369/519 atomic regions from SNP 110419 to 111019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,242 DEBUG Processing 78/344 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,290 DEBUG Processing 41/503 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,396 DEBUG Processing 370/519 atomic regions from SNP 110719 to 111319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,416 DEBUG Processing 79/344 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,476 DEBUG Processing 42/503 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,583 DEBUG Processing 371/519 atomic regions from SNP 111019 to 111619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,596 DEBUG Processing 80/344 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,656 DEBUG Processing 43/503 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,762 DEBUG Processing 81/344 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,770 DEBUG Processing 372/519 atomic regions from SNP 111319 to 111919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,834 DEBUG Processing 44/503 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,925 DEBUG Processing 82/344 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,954 DEBUG Processing 373/519 atomic regions from SNP 111619 to 112219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,015 DEBUG Processing 45/503 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,099 DEBUG Processing 83/344 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,140 DEBUG Processing 374/519 atomic regions from SNP 111919 to 112519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,205 DEBUG Processing 46/503 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,271 DEBUG Processing 84/344 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,322 DEBUG Processing 375/519 atomic regions from SNP 112219 to 112819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,394 DEBUG Processing 47/503 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,439 DEBUG Processing 85/344 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,499 DEBUG Processing 376/519 atomic regions from SNP 112519 to 113119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,585 DEBUG Processing 48/503 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,610 DEBUG Processing 86/344 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,678 DEBUG Processing 377/519 atomic regions from SNP 112819 to 113419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,771 DEBUG Processing 49/503 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,783 DEBUG Processing 87/344 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,863 DEBUG Processing 378/519 atomic regions from SNP 113119 to 113719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,948 DEBUG Processing 50/503 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,958 DEBUG Processing 88/344 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,053 DEBUG Processing 379/519 atomic regions from SNP 113419 to 114019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,125 DEBUG Processing 51/503 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,129 DEBUG Processing 89/344 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,243 DEBUG Processing 380/519 atomic regions from SNP 113719 to 114319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,294 DEBUG Processing 90/344 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,305 DEBUG Processing 52/503 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,431 DEBUG Processing 381/519 atomic regions from SNP 114019 to 114619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,461 DEBUG Processing 91/344 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,492 DEBUG Processing 53/503 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,615 DEBUG Processing 382/519 atomic regions from SNP 114319 to 114919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,631 DEBUG Processing 92/344 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,683 DEBUG Processing 54/503 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,791 DEBUG Processing 383/519 atomic regions from SNP 114619 to 115219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,798 DEBUG Processing 93/344 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,869 DEBUG Processing 55/503 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,962 DEBUG Processing 94/344 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,988 DEBUG Processing 384/519 atomic regions from SNP 114919 to 115519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,058 DEBUG Processing 56/503 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,126 DEBUG Processing 95/344 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,166 DEBUG Processing 385/519 atomic regions from SNP 115219 to 115819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,239 DEBUG Processing 57/503 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,298 DEBUG Processing 96/344 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,353 DEBUG Processing 386/519 atomic regions from SNP 115519 to 116119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,419 DEBUG Processing 58/503 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,468 DEBUG Processing 97/344 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,543 DEBUG Processing 387/519 atomic regions from SNP 115819 to 116419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,608 DEBUG Processing 59/503 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,635 DEBUG Processing 98/344 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,729 DEBUG Processing 388/519 atomic regions from SNP 116119 to 116719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,793 DEBUG Processing 60/503 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,805 DEBUG Processing 99/344 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,911 DEBUG Processing 389/519 atomic regions from SNP 116419 to 117019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,977 DEBUG Processing 100/344 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,982 DEBUG Processing 61/503 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,092 DEBUG Processing 390/519 atomic regions from SNP 116719 to 117319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,150 DEBUG Processing 101/344 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,172 DEBUG Processing 62/503 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,272 DEBUG Processing 391/519 atomic regions from SNP 117019 to 117619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,323 DEBUG Processing 102/344 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,360 DEBUG Processing 63/503 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,457 DEBUG Processing 392/519 atomic regions from SNP 117319 to 117919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,496 DEBUG Processing 103/344 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,542 DEBUG Processing 64/503 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,647 DEBUG Processing 393/519 atomic regions from SNP 117619 to 118219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,686 DEBUG Processing 104/344 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,743 DEBUG Processing 65/503 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,878 DEBUG Processing 394/519 atomic regions from SNP 117919 to 118519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,898 DEBUG Processing 105/344 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,962 DEBUG Processing 66/503 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,071 DEBUG Processing 395/519 atomic regions from SNP 118219 to 118819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,087 DEBUG Processing 106/344 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,145 DEBUG Processing 67/503 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,257 DEBUG Processing 396/519 atomic regions from SNP 118519 to 119119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,269 DEBUG Processing 107/344 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,334 DEBUG Processing 68/503 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,440 DEBUG Processing 397/519 atomic regions from SNP 118819 to 119419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,449 DEBUG Processing 108/344 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,523 DEBUG Processing 69/503 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,620 DEBUG Processing 398/519 atomic regions from SNP 119119 to 119719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,628 DEBUG Processing 109/344 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,713 DEBUG Processing 70/503 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,800 DEBUG Processing 399/519 atomic regions from SNP 119419 to 120019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,809 DEBUG Processing 110/344 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,900 DEBUG Processing 71/503 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,988 DEBUG Processing 400/519 atomic regions from SNP 119719 to 120319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,990 DEBUG Processing 111/344 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,088 DEBUG Processing 72/503 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,173 DEBUG Processing 112/344 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,186 DEBUG Processing 401/519 atomic regions from SNP 120019 to 120619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,279 DEBUG Processing 73/503 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,368 DEBUG Processing 113/344 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,383 DEBUG Processing 402/519 atomic regions from SNP 120319 to 120919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,470 DEBUG Processing 74/503 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,536 DEBUG Processing 114/344 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,588 DEBUG Processing 403/519 atomic regions from SNP 120619 to 121219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,669 DEBUG Processing 75/503 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,708 DEBUG Processing 115/344 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,786 DEBUG Processing 404/519 atomic regions from SNP 120919 to 121519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,858 DEBUG Processing 76/503 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,900 DEBUG Processing 116/344 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,967 DEBUG Processing 405/519 atomic regions from SNP 121219 to 121819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,033 DEBUG Processing 77/503 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,067 DEBUG Processing 117/344 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,146 DEBUG Processing 406/519 atomic regions from SNP 121519 to 122119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,209 DEBUG Processing 78/503 atomic regions from SNP 23177 to 23777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,237 DEBUG Processing 118/344 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,342 DEBUG Processing 407/519 atomic regions from SNP 121819 to 122419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,408 DEBUG Processing 79/503 atomic regions from SNP 23477 to 24077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,439 DEBUG Processing 119/344 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,618 DEBUG Processing 408/519 atomic regions from SNP 122119 to 122719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,666 DEBUG Processing 80/503 atomic regions from SNP 23777 to 24377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,683 DEBUG Processing 120/344 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,824 DEBUG Processing 409/519 atomic regions from SNP 122419 to 123019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,860 DEBUG Processing 121/344 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,865 DEBUG Processing 81/503 atomic regions from SNP 24077 to 24677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,010 DEBUG Processing 410/519 atomic regions from SNP 122719 to 123319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,032 DEBUG Processing 122/344 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,049 DEBUG Processing 82/503 atomic regions from SNP 24377 to 24977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,196 DEBUG Processing 411/519 atomic regions from SNP 123019 to 123619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,203 DEBUG Processing 123/344 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,233 DEBUG Processing 83/503 atomic regions from SNP 24677 to 25277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,382 DEBUG Processing 124/344 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,386 DEBUG Processing 412/519 atomic regions from SNP 123319 to 123919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,421 DEBUG Processing 84/503 atomic regions from SNP 24977 to 25577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,565 DEBUG Processing 125/344 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,573 DEBUG Processing 413/519 atomic regions from SNP 123619 to 124219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,609 DEBUG Processing 85/503 atomic regions from SNP 25277 to 25877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,726 DEBUG Processing 126/344 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,757 DEBUG Processing 414/519 atomic regions from SNP 123919 to 124519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,792 DEBUG Processing 86/503 atomic regions from SNP 25577 to 26177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,886 DEBUG Processing 127/344 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,938 DEBUG Processing 415/519 atomic regions from SNP 124219 to 124819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,970 DEBUG Processing 87/503 atomic regions from SNP 25877 to 26477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,050 DEBUG Processing 128/344 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,124 DEBUG Processing 416/519 atomic regions from SNP 124519 to 125119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,156 DEBUG Processing 88/503 atomic regions from SNP 26177 to 26777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,217 DEBUG Processing 129/344 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,314 DEBUG Processing 417/519 atomic regions from SNP 124819 to 125419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,349 DEBUG Processing 89/503 atomic regions from SNP 26477 to 27077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,397 DEBUG Processing 130/344 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,502 DEBUG Processing 418/519 atomic regions from SNP 125119 to 125719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,539 DEBUG Processing 90/503 atomic regions from SNP 26777 to 27377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,573 DEBUG Processing 131/344 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,695 DEBUG Processing 419/519 atomic regions from SNP 125419 to 126019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,726 DEBUG Processing 91/503 atomic regions from SNP 27077 to 27677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,741 DEBUG Processing 132/344 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,886 DEBUG Processing 420/519 atomic regions from SNP 125719 to 126319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,915 DEBUG Processing 133/344 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,925 DEBUG Processing 92/503 atomic regions from SNP 27377 to 27977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,081 DEBUG Processing 421/519 atomic regions from SNP 126019 to 126619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,087 DEBUG Processing 134/344 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,121 DEBUG Processing 93/503 atomic regions from SNP 27677 to 28277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,261 DEBUG Processing 135/344 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,275 DEBUG Processing 422/519 atomic regions from SNP 126319 to 126919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,311 DEBUG Processing 94/503 atomic regions from SNP 27977 to 28577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,430 DEBUG Processing 136/344 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,473 DEBUG Processing 423/519 atomic regions from SNP 126619 to 127219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,504 DEBUG Processing 95/503 atomic regions from SNP 28277 to 28877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,600 DEBUG Processing 137/344 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,660 DEBUG Processing 424/519 atomic regions from SNP 126919 to 127519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,688 DEBUG Processing 96/503 atomic regions from SNP 28577 to 29177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,770 DEBUG Processing 138/344 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,844 DEBUG Processing 425/519 atomic regions from SNP 127219 to 127819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,874 DEBUG Processing 97/503 atomic regions from SNP 28877 to 29477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,936 DEBUG Processing 139/344 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,026 DEBUG Processing 426/519 atomic regions from SNP 127519 to 128119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,057 DEBUG Processing 98/503 atomic regions from SNP 29177 to 29777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,100 DEBUG Processing 140/344 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,204 DEBUG Processing 427/519 atomic regions from SNP 127819 to 128419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,236 DEBUG Processing 99/503 atomic regions from SNP 29477 to 30077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,261 DEBUG Processing 141/344 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,386 DEBUG Processing 428/519 atomic regions from SNP 128119 to 128719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,419 DEBUG Processing 100/503 atomic regions from SNP 29777 to 30377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,426 DEBUG Processing 142/344 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,567 DEBUG Processing 429/519 atomic regions from SNP 128419 to 129019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,584 DEBUG Processing 143/344 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,600 DEBUG Processing 101/503 atomic regions from SNP 30077 to 30677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,744 DEBUG Processing 144/344 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,747 DEBUG Processing 430/519 atomic regions from SNP 128719 to 129319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,778 DEBUG Processing 102/503 atomic regions from SNP 30377 to 30977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,912 DEBUG Processing 145/344 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,933 DEBUG Processing 431/519 atomic regions from SNP 129019 to 129619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,962 DEBUG Processing 103/503 atomic regions from SNP 30677 to 31277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,081 DEBUG Processing 146/344 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,123 DEBUG Processing 432/519 atomic regions from SNP 129319 to 129919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,150 DEBUG Processing 104/503 atomic regions from SNP 30977 to 31577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,241 DEBUG Processing 147/344 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,304 DEBUG Processing 433/519 atomic regions from SNP 129619 to 130219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,332 DEBUG Processing 105/503 atomic regions from SNP 31277 to 31877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,407 DEBUG Processing 148/344 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,488 DEBUG Processing 434/519 atomic regions from SNP 129919 to 130519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,515 DEBUG Processing 106/503 atomic regions from SNP 31577 to 32177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,576 DEBUG Processing 149/344 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,671 DEBUG Processing 435/519 atomic regions from SNP 130219 to 130819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,698 DEBUG Processing 107/503 atomic regions from SNP 31877 to 32477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,739 DEBUG Processing 150/344 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,866 DEBUG Processing 436/519 atomic regions from SNP 130519 to 131119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,886 DEBUG Processing 108/503 atomic regions from SNP 32177 to 32777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,902 DEBUG Processing 151/344 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,062 DEBUG Processing 437/519 atomic regions from SNP 130819 to 131419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,075 DEBUG Processing 109/503 atomic regions from SNP 32477 to 33077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,090 DEBUG Processing 152/344 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,250 DEBUG Processing 438/519 atomic regions from SNP 131119 to 131719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,262 DEBUG Processing 110/503 atomic regions from SNP 32777 to 33377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,280 DEBUG Processing 153/344 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,426 DEBUG Processing 439/519 atomic regions from SNP 131419 to 132019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,439 DEBUG Processing 111/503 atomic regions from SNP 33077 to 33677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,445 DEBUG Processing 154/344 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,601 DEBUG Processing 155/344 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,602 DEBUG Processing 440/519 atomic regions from SNP 131719 to 132319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,617 DEBUG Processing 112/503 atomic regions from SNP 33377 to 33977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,770 DEBUG Processing 156/344 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,789 DEBUG Processing 441/519 atomic regions from SNP 132019 to 132619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,799 DEBUG Processing 113/503 atomic regions from SNP 33677 to 34277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,945 DEBUG Processing 157/344 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,983 DEBUG Processing 442/519 atomic regions from SNP 132319 to 132919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,990 DEBUG Processing 114/503 atomic regions from SNP 33977 to 34577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,111 DEBUG Processing 158/344 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,173 DEBUG Processing 443/519 atomic regions from SNP 132619 to 133219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,183 DEBUG Processing 115/503 atomic regions from SNP 34277 to 34877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,272 DEBUG Processing 159/344 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,362 DEBUG Processing 444/519 atomic regions from SNP 132919 to 133519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,372 DEBUG Processing 116/503 atomic regions from SNP 34577 to 35177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,441 DEBUG Processing 160/344 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,552 DEBUG Processing 445/519 atomic regions from SNP 133219 to 133819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,560 DEBUG Processing 117/503 atomic regions from SNP 34877 to 35477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,615 DEBUG Processing 161/344 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,740 DEBUG Processing 446/519 atomic regions from SNP 133519 to 134119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,747 DEBUG Processing 118/503 atomic regions from SNP 35177 to 35777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,781 DEBUG Processing 162/344 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,926 DEBUG Processing 447/519 atomic regions from SNP 133819 to 134419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,945 DEBUG Processing 119/503 atomic regions from SNP 35477 to 36077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,949 DEBUG Processing 163/344 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,104 DEBUG Processing 448/519 atomic regions from SNP 134119 to 134719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,113 DEBUG Processing 164/344 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,138 DEBUG Processing 120/503 atomic regions from SNP 35777 to 36377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,283 DEBUG Processing 165/344 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,285 DEBUG Processing 449/519 atomic regions from SNP 134419 to 135019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,322 DEBUG Processing 121/503 atomic regions from SNP 36077 to 36677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,445 DEBUG Processing 166/344 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,467 DEBUG Processing 450/519 atomic regions from SNP 134719 to 135319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,520 DEBUG Processing 122/503 atomic regions from SNP 36377 to 36977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,613 DEBUG Processing 167/344 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,646 DEBUG Processing 451/519 atomic regions from SNP 135019 to 135619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,710 DEBUG Processing 123/503 atomic regions from SNP 36677 to 37277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,783 DEBUG Processing 168/344 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,823 DEBUG Processing 452/519 atomic regions from SNP 135319 to 135919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,888 DEBUG Processing 124/503 atomic regions from SNP 36977 to 37577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,955 DEBUG Processing 169/344 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,005 DEBUG Processing 453/519 atomic regions from SNP 135619 to 136219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,067 DEBUG Processing 125/503 atomic regions from SNP 37277 to 37877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,120 DEBUG Processing 170/344 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,194 DEBUG Processing 454/519 atomic regions from SNP 135919 to 136519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,249 DEBUG Processing 126/503 atomic regions from SNP 37577 to 38177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,293 DEBUG Processing 171/344 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,384 DEBUG Processing 455/519 atomic regions from SNP 136219 to 136819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,434 DEBUG Processing 127/503 atomic regions from SNP 37877 to 38477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,471 DEBUG Processing 172/344 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,575 DEBUG Processing 456/519 atomic regions from SNP 136519 to 137119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,627 DEBUG Processing 128/503 atomic regions from SNP 38177 to 38777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,646 DEBUG Processing 173/344 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,767 DEBUG Processing 457/519 atomic regions from SNP 136819 to 137419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,814 DEBUG Processing 174/344 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,833 DEBUG Processing 129/503 atomic regions from SNP 38477 to 39077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,949 DEBUG Processing 458/519 atomic regions from SNP 137119 to 137719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,975 DEBUG Processing 175/344 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,021 DEBUG Processing 130/503 atomic regions from SNP 38777 to 39377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,125 DEBUG Processing 459/519 atomic regions from SNP 137419 to 138019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,138 DEBUG Processing 176/344 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,205 DEBUG Processing 131/503 atomic regions from SNP 39077 to 39677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,303 DEBUG Processing 177/344 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,321 DEBUG Processing 460/519 atomic regions from SNP 137719 to 138319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,387 DEBUG Processing 132/503 atomic regions from SNP 39377 to 39977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,467 DEBUG Processing 178/344 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,514 DEBUG Processing 461/519 atomic regions from SNP 138019 to 138619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,566 DEBUG Processing 133/503 atomic regions from SNP 39677 to 40277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,632 DEBUG Processing 179/344 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,701 DEBUG Processing 462/519 atomic regions from SNP 138319 to 138919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,746 DEBUG Processing 134/503 atomic regions from SNP 39977 to 40577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,792 DEBUG Processing 180/344 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,888 DEBUG Processing 463/519 atomic regions from SNP 138619 to 139219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:25,930 DEBUG Processing 135/503 atomic regions from SNP 40277 to 40877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,951 DEBUG Processing 181/344 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,072 DEBUG Processing 464/519 atomic regions from SNP 138919 to 139519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,111 DEBUG Processing 182/344 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,116 DEBUG Processing 136/503 atomic regions from SNP 40577 to 41177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,273 DEBUG Processing 183/344 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,283 DEBUG Processing 465/519 atomic regions from SNP 139219 to 139819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,299 DEBUG Processing 137/503 atomic regions from SNP 40877 to 41477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,433 DEBUG Processing 184/344 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,482 DEBUG Processing 466/519 atomic regions from SNP 139519 to 140119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,484 DEBUG Processing 138/503 atomic regions from SNP 41177 to 41777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,592 DEBUG Processing 185/344 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,665 DEBUG Processing 467/519 atomic regions from SNP 139819 to 140419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,671 DEBUG Processing 139/503 atomic regions from SNP 41477 to 42077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,753 DEBUG Processing 186/344 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,848 DEBUG Processing 468/519 atomic regions from SNP 140119 to 140719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:26,854 DEBUG Processing 140/503 atomic regions from SNP 41777 to 42377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,919 DEBUG Processing 187/344 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,030 DEBUG Processing 469/519 atomic regions from SNP 140419 to 141019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,037 DEBUG Processing 141/503 atomic regions from SNP 42077 to 42677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,077 DEBUG Processing 188/344 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,208 DEBUG Processing 470/519 atomic regions from SNP 140719 to 141319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,216 DEBUG Processing 142/503 atomic regions from SNP 42377 to 42977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,235 DEBUG Processing 189/344 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,390 DEBUG Processing 471/519 atomic regions from SNP 141019 to 141619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,395 DEBUG Processing 190/344 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,400 DEBUG Processing 143/503 atomic regions from SNP 42677 to 43277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,557 DEBUG Processing 191/344 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,578 DEBUG Processing 472/519 atomic regions from SNP 141319 to 141919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,587 DEBUG Processing 144/503 atomic regions from SNP 42977 to 43577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,712 DEBUG Processing 192/344 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,768 DEBUG Processing 473/519 atomic regions from SNP 141619 to 142219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:27,773 DEBUG Processing 145/503 atomic regions from SNP 43277 to 43877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,872 DEBUG Processing 193/344 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,957 DEBUG Processing 146/503 atomic regions from SNP 43577 to 44177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,965 DEBUG Processing 474/519 atomic regions from SNP 141919 to 142519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,037 DEBUG Processing 194/344 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,144 DEBUG Processing 147/503 atomic regions from SNP 43877 to 44477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,148 DEBUG Processing 475/519 atomic regions from SNP 142219 to 142819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,199 DEBUG Processing 195/344 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,327 DEBUG Processing 148/503 atomic regions from SNP 44177 to 44777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,327 DEBUG Processing 476/519 atomic regions from SNP 142519 to 143119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,363 DEBUG Processing 196/344 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,513 DEBUG Processing 149/503 atomic regions from SNP 44477 to 45077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,513 DEBUG Processing 477/519 atomic regions from SNP 142819 to 143419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,526 DEBUG Processing 197/344 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,692 DEBUG Processing 198/344 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,697 DEBUG Processing 478/519 atomic regions from SNP 143119 to 143719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,698 DEBUG Processing 150/503 atomic regions from SNP 44777 to 45377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,856 DEBUG Processing 199/344 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,878 DEBUG Processing 479/519 atomic regions from SNP 143419 to 144019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:28,879 DEBUG Processing 151/503 atomic regions from SNP 45077 to 45677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,023 DEBUG Processing 200/344 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,064 DEBUG Processing 480/519 atomic regions from SNP 143719 to 144319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,074 DEBUG Processing 152/503 atomic regions from SNP 45377 to 45977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,193 DEBUG Processing 201/344 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,254 DEBUG Processing 481/519 atomic regions from SNP 144019 to 144619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,264 DEBUG Processing 153/503 atomic regions from SNP 45677 to 46277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,356 DEBUG Processing 202/344 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,445 DEBUG Processing 482/519 atomic regions from SNP 144319 to 144919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,457 DEBUG Processing 154/503 atomic regions from SNP 45977 to 46577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,520 DEBUG Processing 203/344 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,629 DEBUG Processing 483/519 atomic regions from SNP 144619 to 145219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,642 DEBUG Processing 155/503 atomic regions from SNP 46277 to 46877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,691 DEBUG Processing 204/344 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,812 DEBUG Processing 484/519 atomic regions from SNP 144919 to 145519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:29,828 DEBUG Processing 156/503 atomic regions from SNP 46577 to 47177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,861 DEBUG Processing 205/344 atomic regions from SNP 61404 to 62005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,999 DEBUG Processing 485/519 atomic regions from SNP 145219 to 145819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,013 DEBUG Processing 157/503 atomic regions from SNP 46877 to 47477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,035 DEBUG Processing 206/344 atomic regions from SNP 61705 to 62306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,188 DEBUG Processing 486/519 atomic regions from SNP 145519 to 146119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,210 DEBUG Processing 207/344 atomic regions from SNP 62006 to 62607 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,213 DEBUG Processing 158/503 atomic regions from SNP 47177 to 47777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,382 DEBUG Processing 487/519 atomic regions from SNP 145819 to 146419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,389 DEBUG Processing 208/344 atomic regions from SNP 62307 to 62908 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,406 DEBUG Processing 159/503 atomic regions from SNP 47477 to 48077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,561 DEBUG Processing 209/344 atomic regions from SNP 62608 to 63209 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,574 DEBUG Processing 488/519 atomic regions from SNP 146119 to 146719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,599 DEBUG Processing 160/503 atomic regions from SNP 47777 to 48377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,733 DEBUG Processing 210/344 atomic regions from SNP 62909 to 63510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,768 DEBUG Processing 489/519 atomic regions from SNP 146419 to 147019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:30,807 DEBUG Processing 161/503 atomic regions from SNP 48077 to 48677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,901 DEBUG Processing 211/344 atomic regions from SNP 63210 to 63811 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,956 DEBUG Processing 490/519 atomic regions from SNP 146719 to 147319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,014 DEBUG Processing 162/503 atomic regions from SNP 48377 to 48977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,073 DEBUG Processing 212/344 atomic regions from SNP 63511 to 64112 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,139 DEBUG Processing 491/519 atomic regions from SNP 147019 to 147619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,205 DEBUG Processing 163/503 atomic regions from SNP 48677 to 49277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,246 DEBUG Processing 213/344 atomic regions from SNP 63812 to 64413 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,324 DEBUG Processing 492/519 atomic regions from SNP 147319 to 147919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,395 DEBUG Processing 164/503 atomic regions from SNP 48977 to 49577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,414 DEBUG Processing 214/344 atomic regions from SNP 64113 to 64714 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,507 DEBUG Processing 493/519 atomic regions from SNP 147619 to 148219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,585 DEBUG Processing 165/503 atomic regions from SNP 49277 to 49877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,585 DEBUG Processing 215/344 atomic regions from SNP 64414 to 65015 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,691 DEBUG Processing 494/519 atomic regions from SNP 147919 to 148519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,757 DEBUG Processing 216/344 atomic regions from SNP 64715 to 65316 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,766 DEBUG Processing 166/503 atomic regions from SNP 49577 to 50177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,879 DEBUG Processing 495/519 atomic regions from SNP 148219 to 148819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:31,920 DEBUG Processing 217/344 atomic regions from SNP 65016 to 65617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,941 DEBUG Processing 167/503 atomic regions from SNP 49877 to 50477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,067 DEBUG Processing 496/519 atomic regions from SNP 148519 to 149119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,083 DEBUG Processing 218/344 atomic regions from SNP 65317 to 65917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,120 DEBUG Processing 168/503 atomic regions from SNP 50177 to 50777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,246 DEBUG Processing 219/344 atomic regions from SNP 65617 to 66217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,260 DEBUG Processing 497/519 atomic regions from SNP 148819 to 149419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,306 DEBUG Processing 169/503 atomic regions from SNP 50477 to 51077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,400 DEBUG Processing 220/344 atomic regions from SNP 65917 to 66517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,444 DEBUG Processing 498/519 atomic regions from SNP 149119 to 149719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,491 DEBUG Processing 170/503 atomic regions from SNP 50777 to 51377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,563 DEBUG Processing 221/344 atomic regions from SNP 66217 to 66817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,623 DEBUG Processing 499/519 atomic regions from SNP 149419 to 150019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,675 DEBUG Processing 171/503 atomic regions from SNP 51077 to 51677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,724 DEBUG Processing 222/344 atomic regions from SNP 66517 to 67117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,800 DEBUG Processing 500/519 atomic regions from SNP 149719 to 150319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:32,854 DEBUG Processing 172/503 atomic regions from SNP 51377 to 51977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,876 DEBUG Processing 223/344 atomic regions from SNP 66817 to 67417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,975 DEBUG Processing 501/519 atomic regions from SNP 150019 to 150619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,031 DEBUG Processing 173/503 atomic regions from SNP 51677 to 52277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,035 DEBUG Processing 224/344 atomic regions from SNP 67117 to 67717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,151 DEBUG Processing 502/519 atomic regions from SNP 150319 to 150919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,192 DEBUG Processing 225/344 atomic regions from SNP 67417 to 68017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,205 DEBUG Processing 174/503 atomic regions from SNP 51977 to 52577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,327 DEBUG Processing 503/519 atomic regions from SNP 150619 to 151219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,356 DEBUG Processing 226/344 atomic regions from SNP 67717 to 68317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,384 DEBUG Processing 175/503 atomic regions from SNP 52277 to 52877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,502 DEBUG Processing 504/519 atomic regions from SNP 150919 to 151519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,546 DEBUG Processing 227/344 atomic regions from SNP 68017 to 68617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,557 DEBUG Processing 176/503 atomic regions from SNP 52577 to 53177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,682 DEBUG Processing 505/519 atomic regions from SNP 151219 to 151819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,720 DEBUG Processing 228/344 atomic regions from SNP 68317 to 68917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,742 DEBUG Processing 177/503 atomic regions from SNP 52877 to 53477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,869 DEBUG Processing 506/519 atomic regions from SNP 151519 to 152119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:33,882 DEBUG Processing 229/344 atomic regions from SNP 68617 to 69217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,933 DEBUG Processing 178/503 atomic regions from SNP 53177 to 53777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,041 DEBUG Processing 230/344 atomic regions from SNP 68917 to 69517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,052 DEBUG Processing 507/519 atomic regions from SNP 151819 to 152419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,134 DEBUG Processing 179/503 atomic regions from SNP 53477 to 54077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,198 DEBUG Processing 231/344 atomic regions from SNP 69217 to 69817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,228 DEBUG Processing 508/519 atomic regions from SNP 152119 to 152719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,340 DEBUG Processing 180/503 atomic regions from SNP 53777 to 54377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,353 DEBUG Processing 232/344 atomic regions from SNP 69517 to 70117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,406 DEBUG Processing 509/519 atomic regions from SNP 152419 to 153019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,518 DEBUG Processing 233/344 atomic regions from SNP 69817 to 70417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,541 DEBUG Processing 181/503 atomic regions from SNP 54077 to 54677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,583 DEBUG Processing 510/519 atomic regions from SNP 152719 to 153319 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,674 DEBUG Processing 234/344 atomic regions from SNP 70117 to 70717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,715 DEBUG Processing 182/503 atomic regions from SNP 54377 to 54977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,758 DEBUG Processing 511/519 atomic regions from SNP 153019 to 153619 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,829 DEBUG Processing 235/344 atomic regions from SNP 70417 to 71017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,889 DEBUG Processing 183/503 atomic regions from SNP 54677 to 55277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,933 DEBUG Processing 512/519 atomic regions from SNP 153319 to 153919 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:34,984 DEBUG Processing 236/344 atomic regions from SNP 70717 to 71317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,082 DEBUG Processing 184/503 atomic regions from SNP 54977 to 55577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,112 DEBUG Processing 513/519 atomic regions from SNP 153619 to 154219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,139 DEBUG Processing 237/344 atomic regions from SNP 71017 to 71617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,282 DEBUG Processing 185/503 atomic regions from SNP 55277 to 55877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,295 DEBUG Processing 514/519 atomic regions from SNP 153919 to 154519 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,319 DEBUG Processing 238/344 atomic regions from SNP 71317 to 71917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,480 DEBUG Processing 515/519 atomic regions from SNP 154219 to 154819 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,484 DEBUG Processing 239/344 atomic regions from SNP 71617 to 72217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,491 DEBUG Processing 186/503 atomic regions from SNP 55577 to 56177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,645 DEBUG Processing 240/344 atomic regions from SNP 71917 to 72517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,660 DEBUG Processing 516/519 atomic regions from SNP 154519 to 155119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,680 DEBUG Processing 187/503 atomic regions from SNP 55877 to 56477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,808 DEBUG Processing 241/344 atomic regions from SNP 72217 to 72817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,840 DEBUG Processing 517/519 atomic regions from SNP 154819 to 155419 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:35,870 DEBUG Processing 188/503 atomic regions from SNP 56177 to 56777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,999 DEBUG Processing 242/344 atomic regions from SNP 72517 to 73117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,012 DEBUG Processing 518/519 atomic regions from SNP 155119 to 155719 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:36,063 DEBUG Processing 189/503 atomic regions from SNP 56477 to 57077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,177 DEBUG Processing 243/344 atomic regions from SNP 72817 to 73417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,188 DEBUG Processing 519/519 atomic regions from SNP 155419 to 156019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:36,252 DEBUG Processing 190/503 atomic regions from SNP 56777 to 57377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,299 DEBUG Unique SNPs positions in subchromosome 1: 156020 2025-01-31 09:53:36,342 DEBUG Processing 244/344 atomic regions from SNP 73117 to 73717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,451 DEBUG Processing 191/503 atomic regions from SNP 57077 to 57677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,502 DEBUG Processing 245/344 atomic regions from SNP 73417 to 74017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,644 DEBUG Processing 192/503 atomic regions from SNP 57377 to 57977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,673 DEBUG Processing 246/344 atomic regions from SNP 73717 to 74317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,820 DEBUG Processing 193/503 atomic regions from SNP 57677 to 58277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,864 DEBUG Processing 247/344 atomic regions from SNP 74017 to 74617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,992 DEBUG Processing 194/503 atomic regions from SNP 57977 to 58577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,026 DEBUG Processing 248/344 atomic regions from SNP 74317 to 74917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,169 DEBUG Processing 195/503 atomic regions from SNP 58277 to 58877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,188 DEBUG Processing 249/344 atomic regions from SNP 74617 to 75217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,344 DEBUG Processing 196/503 atomic regions from SNP 58577 to 59177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,363 DEBUG Processing 250/344 atomic regions from SNP 74917 to 75517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,519 DEBUG Processing 197/503 atomic regions from SNP 58877 to 59477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,546 DEBUG Processing 251/344 atomic regions from SNP 75217 to 75817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,699 DEBUG Processing 198/503 atomic regions from SNP 59177 to 59777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,728 DEBUG Processing 252/344 atomic regions from SNP 75517 to 76117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,895 DEBUG Processing 199/503 atomic regions from SNP 59477 to 60077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,914 DEBUG Processing 253/344 atomic regions from SNP 75817 to 76417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,084 DEBUG Processing 200/503 atomic regions from SNP 59777 to 60377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,090 DEBUG Processing 254/344 atomic regions from SNP 76117 to 76717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,277 DEBUG Processing 201/503 atomic regions from SNP 60077 to 60677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,278 DEBUG Processing 255/344 atomic regions from SNP 76417 to 77017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,455 DEBUG Processing 202/503 atomic regions from SNP 60377 to 60977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,458 DEBUG Processing 256/344 atomic regions from SNP 76717 to 77317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,639 DEBUG Processing 257/344 atomic regions from SNP 77017 to 77617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,640 DEBUG Processing 203/503 atomic regions from SNP 60677 to 61277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,706 DEBUG Subchromosome time: 120.99740281293634, subchromosome SNPs: 156020 2025-01-31 09:53:38,706 DEBUG Estimated BADs: [2.52, 0.84, 7.57, 0.84, 2.52, 5.05, 0.84, 12.62, 0.63, 2.52, 0.42] SNP counts: [21384, 10307, 24828, 10486, 2942, 9964, 8299, 2768, 8096, 48340, 8606] SNP IDs counts: [21384, 10307, 24828, 10486, 2942, 9964, 8299, 2768, 8096, 48340, 8606] Critical gap: 534087bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.13Mbp, 23.53Mbp, 37.03Mbp, 43.98Mbp, 45.55Mbp, 50.81Mbp, 55.93Mbp, 57.40Mbp, 62.42Mbp, 89.26Mbp, 94.99Mbp] 2025-01-31 09:53:38,706 DEBUG chr17 time: 120.997926053009 s 2025-01-31 09:53:38,797 DEBUG chr17: Fitting background model for 11 segments 2025-01-31 09:53:38,822 DEBUG Processing 204/503 atomic regions from SNP 60977 to 61577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,830 DEBUG Processing 258/344 atomic regions from SNP 77317 to 77917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,011 DEBUG Processing 205/503 atomic regions from SNP 61277 to 61877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,012 DEBUG Processing 259/344 atomic regions from SNP 77617 to 78217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,182 DEBUG Processing 260/344 atomic regions from SNP 77917 to 78517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,195 DEBUG Processing 206/503 atomic regions from SNP 61577 to 62177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,338 DEBUG Processing 261/344 atomic regions from SNP 78217 to 78817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,375 DEBUG Processing 207/503 atomic regions from SNP 61877 to 62477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,504 DEBUG Processing 262/344 atomic regions from SNP 78517 to 79117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,550 DEBUG Processing 208/503 atomic regions from SNP 62177 to 62777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,670 DEBUG Processing 263/344 atomic regions from SNP 78817 to 79417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,727 DEBUG Processing 209/503 atomic regions from SNP 62477 to 63077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,824 DEBUG Processing 264/344 atomic regions from SNP 79117 to 79717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,909 DEBUG Processing 210/503 atomic regions from SNP 62777 to 63377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,982 DEBUG Processing 265/344 atomic regions from SNP 79417 to 80017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,089 DEBUG Processing 211/503 atomic regions from SNP 63077 to 63677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,151 DEBUG Processing 266/344 atomic regions from SNP 79717 to 80317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,266 DEBUG Processing 212/503 atomic regions from SNP 63377 to 63977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,317 DEBUG Processing 267/344 atomic regions from SNP 80017 to 80617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,443 DEBUG Processing 213/503 atomic regions from SNP 63677 to 64277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,473 DEBUG Processing 268/344 atomic regions from SNP 80317 to 80917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,622 DEBUG Processing 214/503 atomic regions from SNP 63977 to 64577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,629 DEBUG Processing 269/344 atomic regions from SNP 80617 to 81217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,790 DEBUG Processing 270/344 atomic regions from SNP 80917 to 81517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,799 DEBUG Processing 215/503 atomic regions from SNP 64277 to 64877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,950 DEBUG Processing 271/344 atomic regions from SNP 81217 to 81817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,978 DEBUG Processing 216/503 atomic regions from SNP 64577 to 65177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,113 DEBUG Processing 272/344 atomic regions from SNP 81517 to 82117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,159 DEBUG Processing 217/503 atomic regions from SNP 64877 to 65477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,269 DEBUG Processing 273/344 atomic regions from SNP 81817 to 82417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,337 DEBUG Processing 218/503 atomic regions from SNP 65177 to 65777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,424 DEBUG Processing 274/344 atomic regions from SNP 82117 to 82717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,513 DEBUG Processing 219/503 atomic regions from SNP 65477 to 66077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,582 DEBUG Processing 275/344 atomic regions from SNP 82417 to 83017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,688 DEBUG Processing 220/503 atomic regions from SNP 65777 to 66377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,741 DEBUG Processing 276/344 atomic regions from SNP 82717 to 83317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,867 DEBUG Processing 221/503 atomic regions from SNP 66077 to 66677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,900 DEBUG Processing 277/344 atomic regions from SNP 83017 to 83617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,043 DEBUG Processing 222/503 atomic regions from SNP 66377 to 66977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,057 DEBUG Processing 278/344 atomic regions from SNP 83317 to 83917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,214 DEBUG Processing 279/344 atomic regions from SNP 83617 to 84217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,224 DEBUG Processing 223/503 atomic regions from SNP 66677 to 67277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,368 DEBUG Processing 280/344 atomic regions from SNP 83917 to 84517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,396 DEBUG Processing 224/503 atomic regions from SNP 66977 to 67577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,529 DEBUG Processing 281/344 atomic regions from SNP 84217 to 84817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,577 DEBUG Processing 225/503 atomic regions from SNP 67277 to 67877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,691 DEBUG Processing 282/344 atomic regions from SNP 84517 to 85117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,761 DEBUG Processing 226/503 atomic regions from SNP 67577 to 68177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,843 DEBUG Processing 283/344 atomic regions from SNP 84817 to 85417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,941 DEBUG Processing 227/503 atomic regions from SNP 67877 to 68477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,000 DEBUG Processing 284/344 atomic regions from SNP 85117 to 85717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,110 DEBUG Processing 228/503 atomic regions from SNP 68177 to 68777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,170 DEBUG Processing 285/344 atomic regions from SNP 85417 to 86017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,281 DEBUG Processing 229/503 atomic regions from SNP 68477 to 69077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,327 DEBUG Processing 286/344 atomic regions from SNP 85717 to 86317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,460 DEBUG Processing 230/503 atomic regions from SNP 68777 to 69377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,479 DEBUG Processing 287/344 atomic regions from SNP 86017 to 86617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,635 DEBUG Processing 288/344 atomic regions from SNP 86317 to 86917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,642 DEBUG Processing 231/503 atomic regions from SNP 69077 to 69677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,792 DEBUG Processing 289/344 atomic regions from SNP 86617 to 87217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,822 DEBUG Processing 232/503 atomic regions from SNP 69377 to 69977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,948 DEBUG Processing 290/344 atomic regions from SNP 86917 to 87517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,000 DEBUG Processing 233/503 atomic regions from SNP 69677 to 70277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,106 DEBUG Processing 291/344 atomic regions from SNP 87217 to 87817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,178 DEBUG Processing 234/503 atomic regions from SNP 69977 to 70577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,259 DEBUG Processing 292/344 atomic regions from SNP 87517 to 88117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,356 DEBUG Processing 235/503 atomic regions from SNP 70277 to 70877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,414 DEBUG Processing 293/344 atomic regions from SNP 87817 to 88417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,528 DEBUG Processing 236/503 atomic regions from SNP 70577 to 71177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,571 DEBUG Processing 294/344 atomic regions from SNP 88117 to 88717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,696 DEBUG Processing 237/503 atomic regions from SNP 70877 to 71477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,728 DEBUG Processing 295/344 atomic regions from SNP 88417 to 89017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,869 DEBUG Processing 238/503 atomic regions from SNP 71177 to 71777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,906 DEBUG Processing 296/344 atomic regions from SNP 88717 to 89317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,049 DEBUG Processing 239/503 atomic regions from SNP 71477 to 72077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,066 DEBUG Processing 297/344 atomic regions from SNP 89017 to 89617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,221 DEBUG Processing 298/344 atomic regions from SNP 89317 to 89917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,228 DEBUG Processing 240/503 atomic regions from SNP 71777 to 72377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,388 DEBUG Processing 299/344 atomic regions from SNP 89617 to 90217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,405 DEBUG Processing 241/503 atomic regions from SNP 72077 to 72677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,555 DEBUG Processing 300/344 atomic regions from SNP 89917 to 90517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,580 DEBUG Processing 242/503 atomic regions from SNP 72377 to 72977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,711 DEBUG Processing 301/344 atomic regions from SNP 90217 to 90817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,761 DEBUG Processing 243/503 atomic regions from SNP 72677 to 73277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,868 DEBUG Processing 302/344 atomic regions from SNP 90517 to 91117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,939 DEBUG Processing 244/503 atomic regions from SNP 72977 to 73577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,029 DEBUG Processing 303/344 atomic regions from SNP 90817 to 91417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,118 DEBUG Processing 245/503 atomic regions from SNP 73277 to 73877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,189 DEBUG Processing 304/344 atomic regions from SNP 91117 to 91717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,297 DEBUG Processing 246/503 atomic regions from SNP 73577 to 74177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,341 DEBUG Processing 305/344 atomic regions from SNP 91417 to 92017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,472 DEBUG Processing 247/503 atomic regions from SNP 73877 to 74477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,502 DEBUG Processing 306/344 atomic regions from SNP 91717 to 92317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,646 DEBUG Processing 248/503 atomic regions from SNP 74177 to 74777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,662 DEBUG Processing 307/344 atomic regions from SNP 92017 to 92617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,820 DEBUG Processing 308/344 atomic regions from SNP 92317 to 92917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,843 DEBUG Processing 249/503 atomic regions from SNP 74477 to 75077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,972 DEBUG Processing 309/344 atomic regions from SNP 92617 to 93217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,018 DEBUG Processing 250/503 atomic regions from SNP 74777 to 75377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,131 DEBUG Processing 310/344 atomic regions from SNP 92917 to 93517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,203 DEBUG Processing 251/503 atomic regions from SNP 75077 to 75677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,292 DEBUG Processing 311/344 atomic regions from SNP 93217 to 93817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,390 DEBUG Processing 252/503 atomic regions from SNP 75377 to 75977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,450 DEBUG Processing 312/344 atomic regions from SNP 93517 to 94117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,569 DEBUG Processing 253/503 atomic regions from SNP 75677 to 76277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,600 DEBUG Processing 313/344 atomic regions from SNP 93817 to 94417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,748 DEBUG Processing 254/503 atomic regions from SNP 75977 to 76577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,760 DEBUG Processing 314/344 atomic regions from SNP 94117 to 94717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,924 DEBUG Processing 255/503 atomic regions from SNP 76277 to 76877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,924 DEBUG Processing 315/344 atomic regions from SNP 94417 to 95017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,080 DEBUG Processing 316/344 atomic regions from SNP 94717 to 95317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,103 DEBUG Processing 256/503 atomic regions from SNP 76577 to 77177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,234 DEBUG Processing 317/344 atomic regions from SNP 95017 to 95617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,282 DEBUG Processing 257/503 atomic regions from SNP 76877 to 77477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,395 DEBUG Processing 318/344 atomic regions from SNP 95317 to 95917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,459 DEBUG Processing 258/503 atomic regions from SNP 77177 to 77777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,551 DEBUG Processing 319/344 atomic regions from SNP 95617 to 96217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,640 DEBUG Processing 259/503 atomic regions from SNP 77477 to 78077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,706 DEBUG Processing 320/344 atomic regions from SNP 95917 to 96517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,826 DEBUG Processing 260/503 atomic regions from SNP 77777 to 78377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,880 DEBUG Processing 321/344 atomic regions from SNP 96217 to 96817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,006 DEBUG Processing 261/503 atomic regions from SNP 78077 to 78677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,040 DEBUG Processing 322/344 atomic regions from SNP 96517 to 97117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,180 DEBUG Processing 262/503 atomic regions from SNP 78377 to 78977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,195 DEBUG Processing 323/344 atomic regions from SNP 96817 to 97417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,347 DEBUG Processing 324/344 atomic regions from SNP 97117 to 97717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,353 DEBUG Processing 263/503 atomic regions from SNP 78677 to 79277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,500 DEBUG Processing 325/344 atomic regions from SNP 97417 to 98017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,527 DEBUG Processing 264/503 atomic regions from SNP 78977 to 79577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,659 DEBUG Processing 326/344 atomic regions from SNP 97717 to 98317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,704 DEBUG Processing 265/503 atomic regions from SNP 79277 to 79877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,829 DEBUG Processing 327/344 atomic regions from SNP 98017 to 98617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,896 DEBUG Processing 266/503 atomic regions from SNP 79577 to 80177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,984 DEBUG Processing 328/344 atomic regions from SNP 98317 to 98917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,080 DEBUG Processing 267/503 atomic regions from SNP 79877 to 80477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,145 DEBUG Processing 329/344 atomic regions from SNP 98617 to 99217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,264 DEBUG Processing 268/503 atomic regions from SNP 80177 to 80777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,304 DEBUG Processing 330/344 atomic regions from SNP 98917 to 99517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,455 DEBUG Processing 269/503 atomic regions from SNP 80477 to 81077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,459 DEBUG Processing 331/344 atomic regions from SNP 99217 to 99817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,617 DEBUG Processing 332/344 atomic regions from SNP 99517 to 100117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,633 DEBUG Processing 270/503 atomic regions from SNP 80777 to 81377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,770 DEBUG Processing 333/344 atomic regions from SNP 99817 to 100417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,805 DEBUG Processing 271/503 atomic regions from SNP 81077 to 81677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,921 DEBUG Processing 334/344 atomic regions from SNP 100117 to 100717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,976 DEBUG Processing 272/503 atomic regions from SNP 81377 to 81977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,078 DEBUG Processing 335/344 atomic regions from SNP 100417 to 101017 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,155 DEBUG Processing 273/503 atomic regions from SNP 81677 to 82277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,230 DEBUG Processing 336/344 atomic regions from SNP 100717 to 101317 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,335 DEBUG Processing 274/503 atomic regions from SNP 81977 to 82577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,379 DEBUG Processing 337/344 atomic regions from SNP 101017 to 101617 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,517 DEBUG Processing 275/503 atomic regions from SNP 82277 to 82877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,536 DEBUG Processing 338/344 atomic regions from SNP 101317 to 101917 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,691 DEBUG Processing 339/344 atomic regions from SNP 101617 to 102217 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,697 DEBUG Processing 276/503 atomic regions from SNP 82577 to 83177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,846 DEBUG Processing 340/344 atomic regions from SNP 101917 to 102517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,876 DEBUG Processing 277/503 atomic regions from SNP 82877 to 83477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,000 DEBUG Processing 341/344 atomic regions from SNP 102217 to 102817 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,050 DEBUG Processing 278/503 atomic regions from SNP 83177 to 83777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,160 DEBUG Processing 342/344 atomic regions from SNP 102517 to 103117 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,225 DEBUG Processing 279/503 atomic regions from SNP 83477 to 84077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,332 DEBUG Processing 343/344 atomic regions from SNP 102817 to 103417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,403 DEBUG Processing 280/503 atomic regions from SNP 83777 to 84377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,486 DEBUG Processing 344/344 atomic regions from SNP 103117 to 103717 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:52,584 DEBUG Processing 281/503 atomic regions from SNP 84077 to 84677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,600 DEBUG Unique SNPs positions in subchromosome 1: 103718 2025-01-31 09:53:52,764 DEBUG Processing 282/503 atomic regions from SNP 84377 to 84977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,945 DEBUG Processing 283/503 atomic regions from SNP 84677 to 85277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,126 DEBUG Processing 284/503 atomic regions from SNP 84977 to 85577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,305 DEBUG Processing 285/503 atomic regions from SNP 85277 to 85877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,487 DEBUG Processing 286/503 atomic regions from SNP 85577 to 86177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,570 DEBUG Subchromosome time: 72.17106717103161, subchromosome SNPs: 103718 2025-01-31 09:53:53,571 DEBUG Estimated BADs: [10.81, 0.90, 8.11, 1.35, 2.70, 0.90, 2.70, 5.41, 0.45, 2.70] SNP counts: [8281, 834, 4514, 20166, 18976, 3914, 11146, 12901, 5073, 17913] SNP IDs counts: [8281, 834, 4514, 20166, 18976, 3914, 11146, 12901, 5073, 17913] Critical gap: 414993bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.62Mbp, 8.22Mbp, 11.03Mbp, 22.69Mbp, 32.98Mbp, 35.41Mbp, 41.79Mbp, 48.63Mbp, 51.65Mbp, 61.43Mbp] 2025-01-31 09:53:53,571 DEBUG chr19 time: 72.17147261300124 s 2025-01-31 09:53:53,633 DEBUG chr19: Fitting background model for 10 segments 2025-01-31 09:53:53,672 DEBUG Processing 287/503 atomic regions from SNP 85877 to 86477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,846 DEBUG Processing 288/503 atomic regions from SNP 86177 to 86777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,023 DEBUG Processing 289/503 atomic regions from SNP 86477 to 87077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,203 DEBUG Processing 290/503 atomic regions from SNP 86777 to 87377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,384 DEBUG Processing 291/503 atomic regions from SNP 87077 to 87677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,564 DEBUG Processing 292/503 atomic regions from SNP 87377 to 87977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,741 DEBUG Processing 293/503 atomic regions from SNP 87677 to 88277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,917 DEBUG Processing 294/503 atomic regions from SNP 87977 to 88577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,095 DEBUG Processing 295/503 atomic regions from SNP 88277 to 88877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,276 DEBUG Processing 296/503 atomic regions from SNP 88577 to 89177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,455 DEBUG Processing 297/503 atomic regions from SNP 88877 to 89477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,631 DEBUG Processing 298/503 atomic regions from SNP 89177 to 89777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,810 DEBUG Processing 299/503 atomic regions from SNP 89477 to 90077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,990 DEBUG Processing 300/503 atomic regions from SNP 89777 to 90377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,171 DEBUG Processing 301/503 atomic regions from SNP 90077 to 90677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,357 DEBUG Processing 302/503 atomic regions from SNP 90377 to 90977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,540 DEBUG Processing 303/503 atomic regions from SNP 90677 to 91277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,720 DEBUG Processing 304/503 atomic regions from SNP 90977 to 91577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,897 DEBUG Processing 305/503 atomic regions from SNP 91277 to 91877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,074 DEBUG Processing 306/503 atomic regions from SNP 91577 to 92177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,268 DEBUG Processing 307/503 atomic regions from SNP 91877 to 92477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,463 DEBUG Processing 308/503 atomic regions from SNP 92177 to 92777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,644 DEBUG Processing 309/503 atomic regions from SNP 92477 to 93077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,820 DEBUG Processing 310/503 atomic regions from SNP 92777 to 93377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,997 DEBUG Processing 311/503 atomic regions from SNP 93077 to 93677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,175 DEBUG Processing 312/503 atomic regions from SNP 93377 to 93977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,354 DEBUG Processing 313/503 atomic regions from SNP 93677 to 94277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,533 DEBUG Processing 314/503 atomic regions from SNP 93977 to 94577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,711 DEBUG Processing 315/503 atomic regions from SNP 94277 to 94877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,895 DEBUG Processing 316/503 atomic regions from SNP 94577 to 95177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,071 DEBUG Processing 317/503 atomic regions from SNP 94877 to 95477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,251 DEBUG Processing 318/503 atomic regions from SNP 95177 to 95777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,431 DEBUG Processing 319/503 atomic regions from SNP 95477 to 96077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,607 DEBUG Processing 320/503 atomic regions from SNP 95777 to 96377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,785 DEBUG Processing 321/503 atomic regions from SNP 96077 to 96677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,961 DEBUG Processing 322/503 atomic regions from SNP 96377 to 96977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,138 DEBUG Processing 323/503 atomic regions from SNP 96677 to 97277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,315 DEBUG Processing 324/503 atomic regions from SNP 96977 to 97577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,490 DEBUG Processing 325/503 atomic regions from SNP 97277 to 97877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,667 DEBUG Processing 326/503 atomic regions from SNP 97577 to 98177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,844 DEBUG Processing 327/503 atomic regions from SNP 97877 to 98477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,021 DEBUG Processing 328/503 atomic regions from SNP 98177 to 98777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,217 DEBUG Processing 329/503 atomic regions from SNP 98477 to 99077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,412 DEBUG Processing 330/503 atomic regions from SNP 98777 to 99377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,608 DEBUG Processing 331/503 atomic regions from SNP 99077 to 99677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,792 DEBUG Processing 332/503 atomic regions from SNP 99377 to 99977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,978 DEBUG Processing 333/503 atomic regions from SNP 99677 to 100277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,168 DEBUG Processing 334/503 atomic regions from SNP 99977 to 100577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,363 DEBUG Processing 335/503 atomic regions from SNP 100277 to 100877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,566 DEBUG Processing 336/503 atomic regions from SNP 100577 to 101177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,765 DEBUG Processing 337/503 atomic regions from SNP 100877 to 101477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,944 DEBUG Processing 338/503 atomic regions from SNP 101177 to 101777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,121 DEBUG Processing 339/503 atomic regions from SNP 101477 to 102077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,303 DEBUG Processing 340/503 atomic regions from SNP 101777 to 102377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,483 DEBUG Processing 341/503 atomic regions from SNP 102077 to 102677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,663 DEBUG Processing 342/503 atomic regions from SNP 102377 to 102977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,843 DEBUG Processing 343/503 atomic regions from SNP 102677 to 103277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,024 DEBUG Processing 344/503 atomic regions from SNP 102977 to 103577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,205 DEBUG Processing 345/503 atomic regions from SNP 103277 to 103877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,388 DEBUG Processing 346/503 atomic regions from SNP 103577 to 104177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,567 DEBUG Processing 347/503 atomic regions from SNP 103877 to 104477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,745 DEBUG Processing 348/503 atomic regions from SNP 104177 to 104777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,959 DEBUG Processing 349/503 atomic regions from SNP 104477 to 105077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,143 DEBUG Processing 350/503 atomic regions from SNP 104777 to 105377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,328 DEBUG Processing 351/503 atomic regions from SNP 105077 to 105677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,515 DEBUG Processing 352/503 atomic regions from SNP 105377 to 105977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,706 DEBUG Processing 353/503 atomic regions from SNP 105677 to 106277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,915 DEBUG Processing 354/503 atomic regions from SNP 105977 to 106577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,096 DEBUG Processing 355/503 atomic regions from SNP 106277 to 106877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,278 DEBUG Processing 356/503 atomic regions from SNP 106577 to 107177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,458 DEBUG Processing 357/503 atomic regions from SNP 106877 to 107477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,638 DEBUG Processing 358/503 atomic regions from SNP 107177 to 107777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,818 DEBUG Processing 359/503 atomic regions from SNP 107477 to 108077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,000 DEBUG Processing 360/503 atomic regions from SNP 107777 to 108377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,183 DEBUG Processing 361/503 atomic regions from SNP 108077 to 108677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,362 DEBUG Processing 362/503 atomic regions from SNP 108377 to 108977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,538 DEBUG Processing 363/503 atomic regions from SNP 108677 to 109277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,715 DEBUG Processing 364/503 atomic regions from SNP 108977 to 109577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,893 DEBUG Processing 365/503 atomic regions from SNP 109277 to 109877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,075 DEBUG Processing 366/503 atomic regions from SNP 109577 to 110177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,258 DEBUG Processing 367/503 atomic regions from SNP 109877 to 110477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,441 DEBUG Processing 368/503 atomic regions from SNP 110177 to 110777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,625 DEBUG Processing 369/503 atomic regions from SNP 110477 to 111077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,806 DEBUG Processing 370/503 atomic regions from SNP 110777 to 111377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,008 DEBUG Processing 371/503 atomic regions from SNP 111077 to 111677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,204 DEBUG Processing 372/503 atomic regions from SNP 111377 to 111977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,399 DEBUG Processing 373/503 atomic regions from SNP 111677 to 112277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,593 DEBUG Processing 374/503 atomic regions from SNP 111977 to 112577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,769 DEBUG Processing 375/503 atomic regions from SNP 112277 to 112877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,941 DEBUG Processing 376/503 atomic regions from SNP 112577 to 113177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,113 DEBUG Processing 377/503 atomic regions from SNP 112877 to 113477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,289 DEBUG Processing 378/503 atomic regions from SNP 113177 to 113777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,466 DEBUG Processing 379/503 atomic regions from SNP 113477 to 114077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,643 DEBUG Processing 380/503 atomic regions from SNP 113777 to 114377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,824 DEBUG Processing 381/503 atomic regions from SNP 114077 to 114677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,006 DEBUG Processing 382/503 atomic regions from SNP 114377 to 114977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,183 DEBUG Processing 383/503 atomic regions from SNP 114677 to 115277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,354 DEBUG Processing 384/503 atomic regions from SNP 114977 to 115577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,526 DEBUG Processing 385/503 atomic regions from SNP 115277 to 115877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,699 DEBUG Processing 386/503 atomic regions from SNP 115577 to 116177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,876 DEBUG Processing 387/503 atomic regions from SNP 115877 to 116477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,051 DEBUG Processing 388/503 atomic regions from SNP 116177 to 116777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,226 DEBUG Processing 389/503 atomic regions from SNP 116477 to 117077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,405 DEBUG Processing 390/503 atomic regions from SNP 116777 to 117377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,605 DEBUG Processing 391/503 atomic regions from SNP 117077 to 117677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,786 DEBUG Processing 392/503 atomic regions from SNP 117377 to 117977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,965 DEBUG Processing 393/503 atomic regions from SNP 117677 to 118277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,139 DEBUG Processing 394/503 atomic regions from SNP 117977 to 118577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,314 DEBUG Processing 395/503 atomic regions from SNP 118277 to 118877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,493 DEBUG Processing 396/503 atomic regions from SNP 118577 to 119177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,674 DEBUG Processing 397/503 atomic regions from SNP 118877 to 119477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,854 DEBUG Processing 398/503 atomic regions from SNP 119177 to 119777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,026 DEBUG Processing 399/503 atomic regions from SNP 119477 to 120077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,206 DEBUG Processing 400/503 atomic regions from SNP 119777 to 120377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,385 DEBUG Processing 401/503 atomic regions from SNP 120077 to 120677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,569 DEBUG Processing 402/503 atomic regions from SNP 120377 to 120977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,756 DEBUG Processing 403/503 atomic regions from SNP 120677 to 121277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,940 DEBUG Processing 404/503 atomic regions from SNP 120977 to 121577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,116 DEBUG Processing 405/503 atomic regions from SNP 121277 to 121877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,297 DEBUG Processing 406/503 atomic regions from SNP 121577 to 122177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,473 DEBUG Processing 407/503 atomic regions from SNP 121877 to 122477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,654 DEBUG Processing 408/503 atomic regions from SNP 122177 to 122777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,860 DEBUG Processing 409/503 atomic regions from SNP 122477 to 123077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,042 DEBUG Processing 410/503 atomic regions from SNP 122777 to 123377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,224 DEBUG Processing 411/503 atomic regions from SNP 123077 to 123677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,408 DEBUG Processing 412/503 atomic regions from SNP 123377 to 123977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,591 DEBUG Processing 413/503 atomic regions from SNP 123677 to 124277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,776 DEBUG Processing 414/503 atomic regions from SNP 123977 to 124577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,958 DEBUG Processing 415/503 atomic regions from SNP 124277 to 124877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,141 DEBUG Processing 416/503 atomic regions from SNP 124577 to 125177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,324 DEBUG Processing 417/503 atomic regions from SNP 124877 to 125477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,502 DEBUG Processing 418/503 atomic regions from SNP 125177 to 125777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,683 DEBUG Processing 419/503 atomic regions from SNP 125477 to 126077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,875 DEBUG Processing 420/503 atomic regions from SNP 125777 to 126377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,065 DEBUG Processing 421/503 atomic regions from SNP 126077 to 126677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,251 DEBUG Processing 422/503 atomic regions from SNP 126377 to 126977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,434 DEBUG Processing 423/503 atomic regions from SNP 126677 to 127277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,616 DEBUG Processing 424/503 atomic regions from SNP 126977 to 127577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,799 DEBUG Processing 425/503 atomic regions from SNP 127277 to 127877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,987 DEBUG Processing 426/503 atomic regions from SNP 127577 to 128177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,171 DEBUG Processing 427/503 atomic regions from SNP 127877 to 128477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,355 DEBUG Processing 428/503 atomic regions from SNP 128177 to 128777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,548 DEBUG Processing 429/503 atomic regions from SNP 128477 to 129077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,743 DEBUG Processing 430/503 atomic regions from SNP 128777 to 129377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,944 DEBUG Processing 431/503 atomic regions from SNP 129077 to 129677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,135 DEBUG Processing 432/503 atomic regions from SNP 129377 to 129977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,344 DEBUG Processing 433/503 atomic regions from SNP 129677 to 130277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,539 DEBUG Processing 434/503 atomic regions from SNP 129977 to 130577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,746 DEBUG Processing 435/503 atomic regions from SNP 130277 to 130877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,944 DEBUG Processing 436/503 atomic regions from SNP 130577 to 131177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,128 DEBUG Processing 437/503 atomic regions from SNP 130877 to 131477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,316 DEBUG Processing 438/503 atomic regions from SNP 131177 to 131777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,499 DEBUG Processing 439/503 atomic regions from SNP 131477 to 132077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,682 DEBUG Processing 440/503 atomic regions from SNP 131777 to 132377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,864 DEBUG Processing 441/503 atomic regions from SNP 132077 to 132677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,057 DEBUG Processing 442/503 atomic regions from SNP 132377 to 132977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,246 DEBUG Processing 443/503 atomic regions from SNP 132677 to 133277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,441 DEBUG Processing 444/503 atomic regions from SNP 132977 to 133577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,634 DEBUG Processing 445/503 atomic regions from SNP 133277 to 133877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,829 DEBUG Processing 446/503 atomic regions from SNP 133577 to 134177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,036 DEBUG Processing 447/503 atomic regions from SNP 133877 to 134477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,243 DEBUG Processing 448/503 atomic regions from SNP 134177 to 134777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,431 DEBUG Processing 449/503 atomic regions from SNP 134477 to 135077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,616 DEBUG Processing 450/503 atomic regions from SNP 134777 to 135377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,799 DEBUG Processing 451/503 atomic regions from SNP 135077 to 135677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,987 DEBUG Processing 452/503 atomic regions from SNP 135377 to 135977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,176 DEBUG Processing 453/503 atomic regions from SNP 135677 to 136277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,364 DEBUG Processing 454/503 atomic regions from SNP 135977 to 136577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,551 DEBUG Processing 455/503 atomic regions from SNP 136277 to 136877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,736 DEBUG Processing 456/503 atomic regions from SNP 136577 to 137177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,917 DEBUG Processing 457/503 atomic regions from SNP 136877 to 137477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,098 DEBUG Processing 458/503 atomic regions from SNP 137177 to 137777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,282 DEBUG Processing 459/503 atomic regions from SNP 137477 to 138077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,474 DEBUG Processing 460/503 atomic regions from SNP 137777 to 138377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,659 DEBUG Processing 461/503 atomic regions from SNP 138077 to 138677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,847 DEBUG Processing 462/503 atomic regions from SNP 138377 to 138977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,032 DEBUG Processing 463/503 atomic regions from SNP 138677 to 139277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,217 DEBUG Processing 464/503 atomic regions from SNP 138977 to 139577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,406 DEBUG Processing 465/503 atomic regions from SNP 139277 to 139877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,594 DEBUG Processing 466/503 atomic regions from SNP 139577 to 140177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,773 DEBUG Processing 467/503 atomic regions from SNP 139877 to 140477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,949 DEBUG Processing 468/503 atomic regions from SNP 140177 to 140777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,127 DEBUG Processing 469/503 atomic regions from SNP 140477 to 141077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,310 DEBUG Processing 470/503 atomic regions from SNP 140777 to 141377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,499 DEBUG Processing 471/503 atomic regions from SNP 141077 to 141677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,686 DEBUG Processing 472/503 atomic regions from SNP 141377 to 141977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,870 DEBUG Processing 473/503 atomic regions from SNP 141677 to 142277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,058 DEBUG Processing 474/503 atomic regions from SNP 141977 to 142577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,239 DEBUG Processing 475/503 atomic regions from SNP 142277 to 142877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,433 DEBUG Processing 476/503 atomic regions from SNP 142577 to 143177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,615 DEBUG Processing 477/503 atomic regions from SNP 142877 to 143477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,801 DEBUG Processing 478/503 atomic regions from SNP 143177 to 143777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,986 DEBUG Processing 479/503 atomic regions from SNP 143477 to 144077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,170 DEBUG Processing 480/503 atomic regions from SNP 143777 to 144377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,351 DEBUG Processing 481/503 atomic regions from SNP 144077 to 144677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,533 DEBUG Processing 482/503 atomic regions from SNP 144377 to 144977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,717 DEBUG Processing 483/503 atomic regions from SNP 144677 to 145277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,909 DEBUG Processing 484/503 atomic regions from SNP 144977 to 145577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,091 DEBUG Processing 485/503 atomic regions from SNP 145277 to 145877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,276 DEBUG Processing 486/503 atomic regions from SNP 145577 to 146177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,463 DEBUG Processing 487/503 atomic regions from SNP 145877 to 146477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,651 DEBUG Processing 488/503 atomic regions from SNP 146177 to 146777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,840 DEBUG Processing 489/503 atomic regions from SNP 146477 to 147077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,030 DEBUG Processing 490/503 atomic regions from SNP 146777 to 147377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,220 DEBUG Processing 491/503 atomic regions from SNP 147077 to 147677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,412 DEBUG Processing 492/503 atomic regions from SNP 147377 to 147977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,603 DEBUG Processing 493/503 atomic regions from SNP 147677 to 148277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,795 DEBUG Processing 494/503 atomic regions from SNP 147977 to 148577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,981 DEBUG Processing 495/503 atomic regions from SNP 148277 to 148877 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,167 DEBUG Processing 496/503 atomic regions from SNP 148577 to 149177 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,354 DEBUG Processing 497/503 atomic regions from SNP 148877 to 149477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,539 DEBUG Processing 498/503 atomic regions from SNP 149177 to 149777 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,722 DEBUG Processing 499/503 atomic regions from SNP 149477 to 150077 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,905 DEBUG Processing 500/503 atomic regions from SNP 149777 to 150377 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,091 DEBUG Processing 501/503 atomic regions from SNP 150077 to 150677 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,268 DEBUG Processing 502/503 atomic regions from SNP 150377 to 150977 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,447 DEBUG Processing 503/503 atomic regions from SNP 150677 to 151277 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:33,565 DEBUG Unique SNPs positions in subchromosome 1: 151278 2025-01-31 09:54:34,023 DEBUG Subchromosome time: 111.63681121496484, subchromosome SNPs: 151278 2025-01-31 09:54:34,023 DEBUG Estimated BADs: [1.79, 5.38, 1.79, 3.59, 1.79, 3.59, 1.79] SNP counts: [52775, 7094, 38597, 13308, 10233, 8169, 21102] SNP IDs counts: [52775, 7094, 38597, 13308, 10233, 8169, 21102] Critical gap: 517067bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 34.31Mbp, 38.19Mbp, 60.49Mbp, 67.65Mbp, 73.57Mbp, 78.02Mbp, 90.70Mbp] 2025-01-31 09:54:34,023 DEBUG chr18 time: 111.63727894495241 s 2025-01-31 09:54:34,106 DEBUG chr18: Fitting background model for 7 segments 2025-01-31 09:54:41,163 DEBUG Results of fit_background_model emitted. 2025-01-31 09:54:41,334 INFO Signal to noise fit: SPOT=0.35±0.12 2025-01-31 09:54:41,340 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 09:54:41,395 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:54:41,396 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:54:46,667 DEBUG chr2: Fitting background model for 1 segments 2025-01-31 09:54:46,974 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:54:47,038 INFO Signal to noise fit: SPOT=0.35±0.12 2025-01-31 09:54:47,063 INFO Final SPOT score: 0.35±0.12. Refitted 1 segments. 2025-01-31 09:54:47,106 INFO Estimating per-bp parameters of background model 2025-01-31 09:54:47,113 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:54:47,114 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:54:53,011 DEBUG chr3:3000000-8783751: Successfully fit background model for 5,004,320 bp. Use segment r for 0 bp 2025-01-31 09:54:53,179 DEBUG chr3:8783751-10299751: Successfully fit background model for 1,394,225 bp. Use segment r for 0 bp 2025-01-31 09:54:53,668 DEBUG chr2:3051000-8721751: Successfully fit background model for 5,259,911 bp. Use segment r for 0 bp 2025-01-31 09:54:53,966 DEBUG chrX:3055000-7553751: Successfully fit background model for 2,001,001 bp. Use segment r for 4,479 bp 2025-01-31 09:54:54,013 DEBUG chr4:3050000-16327751: Successfully fit background model for 11,648,743 bp. Use segment r for 0 bp 2025-01-31 09:54:54,022 DEBUG chrX:7553751-7955751: Successfully fit background model for 393,146 bp. Use segment r for 0 bp 2025-01-31 09:54:54,147 DEBUG chr1:3000500-9534751: Successfully fit background model for 5,691,841 bp. Use segment r for 0 bp 2025-01-31 09:54:54,205 DEBUG chr1:9534751-9935251: Successfully fit background model for 385,261 bp. Use segment r for 0 bp 2025-01-31 09:54:54,474 DEBUG chrX:7955751-11993251: Successfully fit background model for 3,441,713 bp. Use segment r for 0 bp 2025-01-31 09:54:54,773 DEBUG chr2:8721751-18025751: Successfully fit background model for 8,443,052 bp. Use segment r for 0 bp 2025-01-31 09:54:55,105 DEBUG chr5:3002500-20878751: Successfully fit background model for 14,481,583 bp. Use segment r for 2,827 bp 2025-01-31 09:54:55,365 DEBUG chr3:10299751-28395251: Successfully fit background model for 15,658,863 bp. Use segment r for 0 bp 2025-01-31 09:54:55,412 DEBUG chr5:20878751-23415751: Successfully fit background model for 2,316,513 bp. Use segment r for 0 bp 2025-01-31 09:54:55,494 DEBUG chr2:18025751-24917751: Successfully fit background model for 6,142,104 bp. Use segment r for 0 bp 2025-01-31 09:54:55,563 DEBUG chr5:23415751-24883251: Successfully fit background model for 1,397,963 bp. Use segment r for 0 bp 2025-01-31 09:54:55,982 DEBUG chr4:16327751-32799751: Successfully fit background model for 14,622,491 bp. Use segment r for 0 bp 2025-01-31 09:54:56,183 DEBUG chr4:32799751-34548751: Successfully fit background model for 1,634,543 bp. Use segment r for 0 bp 2025-01-31 09:54:56,185 DEBUG chr5:24883251-30473251: Successfully fit background model for 5,008,032 bp. Use segment r for 0 bp 2025-01-31 09:54:56,225 DEBUG chrX:11993251-26910501: Successfully fit background model for 11,138,949 bp. Use segment r for 0 bp 2025-01-31 09:54:56,702 DEBUG chr4:34548751-40134751: Successfully fit background model for 4,991,379 bp. Use segment r for 0 bp 2025-01-31 09:54:56,704 DEBUG chr2:24917751-36251751: Successfully fit background model for 11,013,256 bp. Use segment r for 0 bp 2025-01-31 09:54:56,749 DEBUG chrX:31132500-34594501: Successfully fit background model for 215,660 bp. Use segment r for 2,390 bp 2025-01-31 09:54:56,788 DEBUG chr5:30473251-36562751: Successfully fit background model for 5,839,880 bp. Use segment r for 0 bp 2025-01-31 09:54:56,882 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,355 bp. Use segment r for 0 bp 2025-01-31 09:54:56,887 DEBUG chr1:9935251-33545751: Successfully fit background model for 21,103,459 bp. Use segment r for 0 bp 2025-01-31 09:54:57,042 DEBUG chr2:36251751-39697251: Successfully fit background model for 3,103,159 bp. Use segment r for 0 bp 2025-01-31 09:54:57,122 DEBUG chr5:36562751-40082751: Successfully fit background model for 3,278,314 bp. Use segment r for 0 bp 2025-01-31 09:54:57,464 DEBUG chr2:39697251-44242751: Successfully fit background model for 4,177,972 bp. Use segment r for 0 bp 2025-01-31 09:54:57,491 DEBUG chr1:33545751-39361751: Successfully fit background model for 5,546,383 bp. Use segment r for 0 bp 2025-01-31 09:54:57,543 DEBUG chr4:42706000-48797501: Successfully fit background model for 5,778,589 bp. Use segment r for 0 bp 2025-01-31 09:54:57,746 DEBUG chr3:28395251-41736251: Successfully fit background model for 12,229,895 bp. Use segment r for 4,254 bp 2025-01-31 09:54:57,912 DEBUG chr4:48797501-52665001: Successfully fit background model for 3,402,061 bp. Use segment r for 0 bp 2025-01-31 09:54:57,926 DEBUG chr1:39361751-44118251: Successfully fit background model for 4,553,246 bp. Use segment r for 0 bp 2025-01-31 09:54:57,942 DEBUG chr1:44118251-44174251: Successfully fit background model for 55,228 bp. Use segment r for 0 bp 2025-01-31 09:54:58,404 DEBUG chrX:35469500-50577001: Successfully fit background model for 12,677,039 bp. Use segment r for 0 bp 2025-01-31 09:54:58,439 DEBUG chrX:50577001-50641251: Successfully fit background model for 58,914 bp. Use segment r for 0 bp 2025-01-31 09:54:58,809 DEBUG chr1:44174251-52098751: Successfully fit background model for 6,891,820 bp. Use segment r for 0 bp 2025-01-31 09:54:58,830 DEBUG chrX:50641251-54270501: Successfully fit background model for 3,211,069 bp. Use segment r for 0 bp 2025-01-31 09:54:58,844 DEBUG chr5:40082751-55493001: Successfully fit background model for 14,135,926 bp. Use segment r for 0 bp 2025-01-31 09:54:59,224 DEBUG chr3:41736251-50840251: Successfully fit background model for 8,017,957 bp. Use segment r for 81 bp 2025-01-31 09:54:59,309 DEBUG chr3:50840251-51507251: Successfully fit background model for 640,374 bp. Use segment r for 0 bp 2025-01-31 09:54:59,571 DEBUG chr5:55493001-62966251: Successfully fit background model for 6,590,383 bp. Use segment r for 0 bp 2025-01-31 09:54:59,992 DEBUG chr1:52098751-62695751: Successfully fit background model for 9,836,272 bp. Use segment r for 0 bp 2025-01-31 09:55:00,137 DEBUG chr5:62966251-69080751: Successfully fit background model for 5,722,169 bp. Use segment r for 0 bp 2025-01-31 09:55:00,238 DEBUG chr1:62695751-65193251: Successfully fit background model for 2,348,253 bp. Use segment r for 0 bp 2025-01-31 09:55:00,345 DEBUG chr5:69080751-71157251: Successfully fit background model for 1,826,637 bp. Use segment r for 0 bp 2025-01-31 09:55:00,419 DEBUG chr4:52665001-66725751: Successfully fit background model for 11,495,132 bp. Use segment r for 4,505 bp 2025-01-31 09:55:00,517 DEBUG chr2:44242751-69789501: Successfully fit background model for 23,545,749 bp. Use segment r for 0 bp 2025-01-31 09:55:00,869 DEBUG chrX:55164500-73224001: Successfully fit background model for 15,153,377 bp. Use segment r for 0 bp 2025-01-31 09:55:00,937 DEBUG chr1:65193251-72199251: Successfully fit background model for 6,459,616 bp. Use segment r for 0 bp 2025-01-31 09:55:01,033 DEBUG chr5:71157251-78765751: Successfully fit background model for 7,078,745 bp. Use segment r for 0 bp 2025-01-31 09:55:01,131 DEBUG chrX:73224001-75672751: Successfully fit background model for 1,971,356 bp. Use segment r for 0 bp 2025-01-31 09:55:01,140 DEBUG chr1:72199251-74274751: Successfully fit background model for 1,970,201 bp. Use segment r for 0 bp 2025-01-31 09:55:01,141 DEBUG chr2:69789501-75656751: Successfully fit background model for 5,681,791 bp. Use segment r for 0 bp 2025-01-31 09:55:01,162 DEBUG chr2:75656751-75728751: Successfully fit background model for 67,604 bp. Use segment r for 0 bp 2025-01-31 09:55:01,253 DEBUG chr1:74274751-75420751: Successfully fit background model for 1,050,536 bp. Use segment r for 0 bp 2025-01-31 09:55:01,407 DEBUG chr3:51507251-69173751: Successfully fit background model for 16,003,488 bp. Use segment r for 0 bp 2025-01-31 09:55:01,483 DEBUG chr5:78765751-83159251: Successfully fit background model for 3,953,502 bp. Use segment r for 0 bp 2025-01-31 09:55:01,730 DEBUG chr2:75728751-81162251: Successfully fit background model for 5,092,470 bp. Use segment r for 0 bp 2025-01-31 09:55:01,894 DEBUG chr4:66725751-79967251: Successfully fit background model for 11,699,747 bp. Use segment r for 0 bp 2025-01-31 09:55:02,082 DEBUG chr2:81162251-84649751: Successfully fit background model for 2,966,925 bp. Use segment r for 0 bp 2025-01-31 09:55:02,236 DEBUG chr2:84649751-86097001: Successfully fit background model for 1,332,076 bp. Use segment r for 0 bp 2025-01-31 09:55:02,355 DEBUG chr1:75420751-86138751: Successfully fit background model for 9,451,564 bp. Use segment r for 0 bp 2025-01-31 09:55:02,413 DEBUG chr1:86138751-86513251: Successfully fit background model for 364,349 bp. Use segment r for 0 bp 2025-01-31 09:55:02,424 DEBUG chr5:83159251-92073251: Successfully fit background model for 7,993,223 bp. Use segment r for 0 bp 2025-01-31 09:55:02,575 DEBUG chr2:86097001-89352751: Successfully fit background model for 2,826,166 bp. Use segment r for 0 bp 2025-01-31 09:55:02,897 DEBUG chrX:75672751-91311251: Successfully fit background model for 13,430,900 bp. Use segment r for 0 bp 2025-01-31 09:55:03,132 DEBUG chr1:86513251-93723251: Successfully fit background model for 6,921,358 bp. Use segment r for 0 bp 2025-01-31 09:55:03,135 DEBUG chr3:69173751-84035251: Successfully fit background model for 13,409,698 bp. Use segment r for 0 bp 2025-01-31 09:55:03,203 DEBUG chr2:89352751-95417501: Successfully fit background model for 5,490,470 bp. Use segment r for 0 bp 2025-01-31 09:55:03,499 DEBUG chr3:84035251-87724251: Successfully fit background model for 3,511,869 bp. Use segment r for 0 bp 2025-01-31 09:55:03,658 DEBUG chr4:79967251-96084501: Successfully fit background model for 14,545,071 bp. Use segment r for 0 bp 2025-01-31 09:55:03,756 DEBUG chr2:95417501-101037751: Successfully fit background model for 4,679,404 bp. Use segment r for 0 bp 2025-01-31 09:55:03,771 DEBUG chr3:87724251-90450751: Successfully fit background model for 2,590,414 bp. Use segment r for 0 bp 2025-01-31 09:55:04,341 DEBUG chr5:92073251-103655251: Successfully fit background model for 8,820,085 bp. Use segment r for 4,071 bp 2025-01-31 09:55:04,382 DEBUG chr3:90450751-94561751: Successfully fit background model for 3,190,747 bp. Use segment r for 1,588 bp 2025-01-31 09:55:04,416 DEBUG chr1:93723251-105961251: Successfully fit background model for 10,691,318 bp. Use segment r for 0 bp 2025-01-31 09:55:04,496 DEBUG chrX:91311251-105994251: Successfully fit background model for 12,590,876 bp. Use segment r for 0 bp 2025-01-31 09:55:04,636 DEBUG chr3:94561751-97150751: Successfully fit background model for 2,370,041 bp. Use segment r for 0 bp 2025-01-31 09:55:04,672 DEBUG chr1:105961251-108536751: Successfully fit background model for 2,320,093 bp. Use segment r for 0 bp 2025-01-31 09:55:05,358 DEBUG chr4:96084501-111977251: Successfully fit background model for 14,818,349 bp. Use segment r for 0 bp 2025-01-31 09:55:05,676 DEBUG chr1:108536751-118310251: Successfully fit background model for 8,510,035 bp. Use segment r for 0 bp 2025-01-31 09:55:05,791 DEBUG chr2:101037751-118655251: Successfully fit background model for 16,333,995 bp. Use segment r for 0 bp 2025-01-31 09:55:05,806 DEBUG chr4:111977251-115034251: Successfully fit background model for 2,703,172 bp. Use segment r for 15,197 bp 2025-01-31 09:55:05,862 DEBUG chr1:118310251-120070751: Successfully fit background model for 1,711,436 bp. Use segment r for 0 bp 2025-01-31 09:55:06,120 DEBUG chr5:103655251-120089251: Successfully fit background model for 15,517,172 bp. Use segment r for 0 bp 2025-01-31 09:55:06,150 DEBUG chr2:118655251-122233251: Successfully fit background model for 3,440,299 bp. Use segment r for 0 bp 2025-01-31 09:55:06,206 DEBUG chr3:97150751-110696251: Successfully fit background model for 12,562,001 bp. Use segment r for 0 bp 2025-01-31 09:55:06,218 DEBUG chr4:115034251-119232251: Successfully fit background model for 3,870,081 bp. Use segment r for 0 bp 2025-01-31 09:55:06,601 DEBUG chr3:110696251-114835751: Successfully fit background model for 3,402,546 bp. Use segment r for 0 bp 2025-01-31 09:55:06,611 DEBUG chr2:122233251-127204751: Successfully fit background model for 4,606,035 bp. Use segment r for 0 bp 2025-01-31 09:55:06,636 DEBUG chr5:120089251-125376501: Successfully fit background model for 5,064,758 bp. Use segment r for 0 bp 2025-01-31 09:55:06,920 DEBUG chr3:114835751-118187251: Successfully fit background model for 3,109,116 bp. Use segment r for 0 bp 2025-01-31 09:55:06,923 DEBUG chr1:120070751-130715251: Successfully fit background model for 9,892,778 bp. Use segment r for 0 bp 2025-01-31 09:55:06,984 DEBUG chr2:127204751-131122751: Successfully fit background model for 3,770,895 bp. Use segment r for 0 bp 2025-01-31 09:55:07,056 DEBUG chr5:125376501-129720251: Successfully fit background model for 4,154,012 bp. Use segment r for 0 bp 2025-01-31 09:55:07,114 DEBUG chr5:129720251-130133251: Successfully fit background model for 352,794 bp. Use segment r for 0 bp 2025-01-31 09:55:07,199 DEBUG chr3:118187251-121160751: Successfully fit background model for 2,753,849 bp. Use segment r for 0 bp 2025-01-31 09:55:07,456 DEBUG chr1:130715251-136343251: Successfully fit background model for 5,473,905 bp. Use segment r for 0 bp 2025-01-31 09:55:07,542 DEBUG chr5:130133251-134170251: Successfully fit background model for 3,871,904 bp. Use segment r for 0 bp 2025-01-31 09:55:07,621 DEBUG chrX:105994251-124247501: Successfully fit background model for 14,679,751 bp. Use segment r for 10,824 bp 2025-01-31 09:55:07,661 DEBUG chr4:119232251-131682501: Successfully fit background model for 11,115,527 bp. Use segment r for 0 bp 2025-01-31 09:55:07,831 DEBUG chr1:136343251-140145751: Successfully fit background model for 3,433,491 bp. Use segment r for 0 bp 2025-01-31 09:55:08,197 DEBUG chr5:134170251-140562751: Successfully fit background model for 6,022,419 bp. Use segment r for 0 bp 2025-01-31 09:55:08,736 DEBUG chrX:126001000-133848751: Successfully fit background model for 6,738,435 bp. Use segment r for 4,769 bp 2025-01-31 09:55:08,748 DEBUG chr4:131682501-141734751: Successfully fit background model for 9,817,743 bp. Use segment r for 0 bp 2025-01-31 09:55:09,057 DEBUG chr3:121160751-137082251: Successfully fit background model for 14,796,608 bp. Use segment r for 0 bp 2025-01-31 09:55:09,179 DEBUG chr1:140145751-151736251: Successfully fit background model for 10,265,148 bp. Use segment r for 0 bp 2025-01-31 09:55:09,409 DEBUG chr5:140562751-151834684: Successfully fit background model for 10,415,071 bp. Use segment r for 0 bp 2025-01-31 09:55:09,498 DEBUG chr2:131122751-152330751: Successfully fit background model for 19,488,059 bp. Use segment r for 0 bp 2025-01-31 09:55:09,611 DEBUG chr4:141734751-147903751: Successfully fit background model for 3,936,540 bp. Use segment r for 628 bp 2025-01-31 09:55:10,045 DEBUG chr2:152330751-157497751: Successfully fit background model for 4,962,099 bp. Use segment r for 0 bp 2025-01-31 09:55:10,490 DEBUG chr4:147903751-156508116: Successfully fit background model for 8,188,225 bp. Use segment r for 0 bp 2025-01-31 09:55:10,609 DEBUG chr2:157497751-163315751: Successfully fit background model for 5,571,849 bp. Use segment r for 0 bp 2025-01-31 09:55:10,785 DEBUG chr3:137082251-146994751: Successfully fit background model for 9,215,535 bp. Use segment r for 60,964 bp 2025-01-31 09:55:11,056 DEBUG chr2:163315751-168081751: Successfully fit background model for 4,593,129 bp. Use segment r for 0 bp 2025-01-31 09:55:11,175 DEBUG chr3:146994751-151014251: Successfully fit background model for 3,806,055 bp. Use segment r for 0 bp 2025-01-31 09:55:11,401 DEBUG chr1:151736251-171006751: Successfully fit background model for 18,128,829 bp. Use segment r for 0 bp 2025-01-31 09:55:11,500 DEBUG chr1:171006751-171372751: Successfully fit background model for 338,574 bp. Use segment r for 0 bp 2025-01-31 09:55:11,583 DEBUG chr3:151014251-155292251: Successfully fit background model for 4,039,802 bp. Use segment r for 0 bp 2025-01-31 09:55:11,822 DEBUG chr2:168081751-175179501: Successfully fit background model for 6,755,329 bp. Use segment r for 0 bp 2025-01-31 09:55:12,012 DEBUG chr3:155292251-160039680: Successfully fit background model for 4,158,372 bp. Use segment r for 0 bp 2025-01-31 09:55:12,127 DEBUG chr2:176700000-179818751: Successfully fit background model for 1,927,932 bp. Use segment r for 0 bp 2025-01-31 09:55:12,272 DEBUG chr1:171372751-178299251: Successfully fit background model for 6,275,731 bp. Use segment r for 0 bp 2025-01-31 09:55:12,375 DEBUG chr2:179818751-182113224: Successfully fit background model for 2,104,974 bp. Use segment r for 0 bp 2025-01-31 09:55:12,540 DEBUG chr1:178299251-181143751: Successfully fit background model for 2,746,356 bp. Use segment r for 0 bp 2025-01-31 09:55:12,988 DEBUG chr1:181143751-185425751: Successfully fit background model for 3,994,121 bp. Use segment r for 0 bp 2025-01-31 09:55:13,612 DEBUG chr1:185425751-190828751: Successfully fit background model for 5,203,150 bp. Use segment r for 0 bp 2025-01-31 09:55:13,731 DEBUG chr1:190828751-191945251: Successfully fit background model for 1,074,625 bp. Use segment r for 0 bp 2025-01-31 09:55:14,172 DEBUG chr1:191945251-195471971: Successfully fit background model for 3,174,474 bp. Use segment r for 0 bp 2025-01-31 09:55:18,306 DEBUG chrX:133848751-171031299: Successfully fit background model for 29,968,009 bp. Use segment r for 5,219 bp 2025-01-31 09:56:38,030 DEBUG chr6:3054500-28394751: Successfully fit background model for 22,472,369 bp. Use segment r for 0 bp 2025-01-31 09:56:38,731 DEBUG chr7:3007500-3584751: Successfully fit background model for 433,962 bp. Use segment r for 0 bp 2025-01-31 09:56:38,752 DEBUG chr6:28394751-35126251: Successfully fit background model for 6,434,672 bp. Use segment r for 0 bp 2025-01-31 09:56:38,893 DEBUG chr7:3584751-5129251: Successfully fit background model for 1,240,953 bp. Use segment r for 0 bp 2025-01-31 09:56:38,966 DEBUG chr7:5129251-5745251: Successfully fit background model for 446,283 bp. Use segment r for 0 bp 2025-01-31 09:56:39,063 DEBUG chr6:35126251-38293251: Successfully fit background model for 2,927,099 bp. Use segment r for 0 bp 2025-01-31 09:56:39,129 DEBUG chr7:5745251-7300251: Successfully fit background model for 1,310,241 bp. Use segment r for 0 bp 2025-01-31 09:56:39,184 DEBUG chr6:38293251-39374751: Successfully fit background model for 1,061,740 bp. Use segment r for 0 bp 2025-01-31 09:56:39,904 DEBUG chr7:7300251-12363751: Successfully fit background model for 1,738,324 bp. Use segment r for 11,597 bp 2025-01-31 09:56:40,021 DEBUG chr7:12363751-13363751: Successfully fit background model for 824,325 bp. Use segment r for 0 bp 2025-01-31 09:56:40,048 DEBUG chr6:39374751-47594251: Successfully fit background model for 7,383,555 bp. Use segment r for 0 bp 2025-01-31 09:56:40,102 DEBUG chr6:47594251-47898751: Successfully fit background model for 165,280 bp. Use segment r for 0 bp 2025-01-31 09:56:40,311 DEBUG chr7:13363751-15912251: Successfully fit background model for 1,516,098 bp. Use segment r for 0 bp 2025-01-31 09:56:40,441 DEBUG chr7:15912251-17098751: Successfully fit background model for 1,150,884 bp. Use segment r for 0 bp 2025-01-31 09:56:40,757 DEBUG chr7:17098751-18998751: Successfully fit background model for 1,358,730 bp. Use segment r for 7,116 bp 2025-01-31 09:56:40,872 DEBUG chr7:18998751-20073001: Successfully fit background model for 1,023,208 bp. Use segment r for 0 bp 2025-01-31 09:56:41,078 DEBUG chr7:22791500-24079751: Successfully fit background model for 637,395 bp. Use segment r for 2,835 bp 2025-01-31 09:56:41,805 DEBUG chr7:24079751-31192251: Successfully fit background model for 6,501,471 bp. Use segment r for 0 bp 2025-01-31 09:56:42,168 DEBUG chr7:31192251-33646501: Successfully fit background model for 882,489 bp. Use segment r for 8,939 bp 2025-01-31 09:56:42,466 DEBUG chr10:3101500-40124751: Successfully fit background model for 33,658,218 bp. Use segment r for 0 bp 2025-01-31 09:56:42,858 DEBUG chr10:40124751-43435751: Successfully fit background model for 3,176,670 bp. Use segment r for 0 bp 2025-01-31 09:56:43,077 DEBUG chr7:33646501-39622251: Successfully fit background model for 4,859,468 bp. Use segment r for 4,106 bp 2025-01-31 09:56:43,392 DEBUG chr7:39622251-42903751: Successfully fit background model for 2,804,361 bp. Use segment r for 0 bp 2025-01-31 09:56:43,591 DEBUG chr7:42903751-44815251: Successfully fit background model for 1,727,426 bp. Use segment r for 0 bp 2025-01-31 09:56:43,687 DEBUG chr7:44815251-45682751: Successfully fit background model for 851,415 bp. Use segment r for 0 bp 2025-01-31 09:56:43,836 DEBUG chr7:45682751-47190001: Successfully fit background model for 1,468,994 bp. Use segment r for 0 bp 2025-01-31 09:56:43,981 DEBUG chr7:47190001-48395251: Successfully fit background model for 963,746 bp. Use segment r for 0 bp 2025-01-31 09:56:44,145 DEBUG chr6:47898751-70709251: Successfully fit background model for 20,474,660 bp. Use segment r for 211 bp 2025-01-31 09:56:44,156 DEBUG chr7:48395251-50064751: Successfully fit background model for 1,573,006 bp. Use segment r for 0 bp 2025-01-31 09:56:44,373 DEBUG chr6:70709251-72440751: Successfully fit background model for 1,672,581 bp. Use segment r for 0 bp 2025-01-31 09:56:44,594 DEBUG chr6:72440751-74587501: Successfully fit background model for 1,964,852 bp. Use segment r for 0 bp 2025-01-31 09:56:44,711 DEBUG chr10:43435751-59787251: Successfully fit background model for 14,420,361 bp. Use segment r for 0 bp 2025-01-31 09:56:45,068 DEBUG chr10:59787251-63241751: Successfully fit background model for 3,358,227 bp. Use segment r for 0 bp 2025-01-31 09:56:45,579 DEBUG chr6:74587501-82996251: Successfully fit background model for 7,606,314 bp. Use segment r for 0 bp 2025-01-31 09:56:46,405 DEBUG chr6:82996251-91114251: Successfully fit background model for 7,641,390 bp. Use segment r for 0 bp 2025-01-31 09:56:46,563 DEBUG chr7:50064751-63882751: Successfully fit background model for 11,771,394 bp. Use segment r for 1,828 bp 2025-01-31 09:56:47,243 DEBUG chr10:63241751-75552251: Successfully fit background model for 11,311,262 bp. Use segment r for 79,938 bp 2025-01-31 09:56:47,643 DEBUG chr10:75552251-79649251: Successfully fit background model for 3,803,767 bp. Use segment r for 0 bp 2025-01-31 09:56:47,836 DEBUG chr10:79649251-81557751: Successfully fit background model for 1,875,263 bp. Use segment r for 0 bp 2025-01-31 09:56:48,370 DEBUG chr10:81557751-86680501: Successfully fit background model for 4,436,009 bp. Use segment r for 0 bp 2025-01-31 09:56:48,385 DEBUG chr7:63882751-80023751: Successfully fit background model for 15,151,736 bp. Use segment r for 0 bp 2025-01-31 09:56:48,506 DEBUG chr7:80023751-80895251: Successfully fit background model for 854,492 bp. Use segment r for 0 bp 2025-01-31 09:56:48,519 DEBUG chr6:91114251-109406751: Successfully fit background model for 17,065,488 bp. Use segment r for 0 bp 2025-01-31 09:56:48,884 DEBUG chr6:109406751-112896251: Successfully fit background model for 3,187,816 bp. Use segment r for 0 bp 2025-01-31 09:56:48,940 DEBUG chr7:80895251-85003751: Successfully fit background model for 3,862,456 bp. Use segment r for 0 bp 2025-01-31 09:56:48,984 DEBUG chr6:112896251-113675751: Successfully fit background model for 764,791 bp. Use segment r for 0 bp 2025-01-31 09:56:49,200 DEBUG chr7:85003751-87791501: Successfully fit background model for 2,461,780 bp. Use segment r for 0 bp 2025-01-31 09:56:49,784 DEBUG chr7:87791501-93333251: Successfully fit background model for 5,061,169 bp. Use segment r for 0 bp 2025-01-31 09:56:49,958 DEBUG chr7:93333251-95011751: Successfully fit background model for 1,523,042 bp. Use segment r for 0 bp 2025-01-31 09:56:50,468 DEBUG chr8:3070000-4778751: Successfully fit background model for 1,496,466 bp. Use segment r for 0 bp 2025-01-31 09:56:50,705 DEBUG chr8:4778751-7011751: Successfully fit background model for 1,965,835 bp. Use segment r for 0 bp 2025-01-31 09:56:50,707 DEBUG chr6:113675751-128759751: Successfully fit background model for 13,756,518 bp. Use segment r for 0 bp 2025-01-31 09:56:51,098 DEBUG chr8:7011751-10926251: Successfully fit background model for 3,678,791 bp. Use segment r for 0 bp 2025-01-31 09:56:51,396 DEBUG chr8:10926251-13734751: Successfully fit background model for 2,737,258 bp. Use segment r for 0 bp 2025-01-31 09:56:53,015 DEBUG chr10:86680501-126900251: Successfully fit background model for 37,428,344 bp. Use segment r for 0 bp 2025-01-31 09:56:53,245 DEBUG chr10:126900251-128695251: Successfully fit background model for 1,742,643 bp. Use segment r for 0 bp 2025-01-31 09:56:53,445 DEBUG chr10:128695251-130694993: Successfully fit background model for 1,606,937 bp. Use segment r for 0 bp 2025-01-31 09:56:53,740 DEBUG chr8:13734751-27111501: Successfully fit background model for 10,954,463 bp. Use segment r for 26,235 bp 2025-01-31 09:56:54,383 DEBUG chr6:128759751-149736546: Successfully fit background model for 18,967,660 bp. Use segment r for 1,681 bp 2025-01-31 09:56:55,434 DEBUG chr7:95011751-126256751: Successfully fit background model for 28,872,039 bp. Use segment r for 2,859 bp 2025-01-31 09:56:55,690 DEBUG chr7:126256751-128206751: Successfully fit background model for 1,875,825 bp. Use segment r for 0 bp 2025-01-31 09:56:57,183 DEBUG chr7:128206751-141092501: Successfully fit background model for 12,311,868 bp. Use segment r for 0 bp 2025-01-31 09:56:57,255 DEBUG chr7:141092501-141534251: Successfully fit background model for 432,596 bp. Use segment r for 0 bp 2025-01-31 09:56:57,663 DEBUG chr7:141534251-145441459: Successfully fit background model for 3,636,251 bp. Use segment r for 0 bp 2025-01-31 09:57:00,051 DEBUG chr14:3032500-5131001: Successfully fit background model for 68,526 bp. Use segment r for 5,611 bp 2025-01-31 09:57:01,373 DEBUG chr8:27111501-69789251: Successfully fit background model for 38,313,136 bp. Use segment r for 5,772 bp 2025-01-31 09:57:01,705 DEBUG chr8:69789251-72412251: Successfully fit background model for 2,361,047 bp. Use segment r for 0 bp 2025-01-31 09:57:02,410 DEBUG chr14:5842000-19699751: Successfully fit background model for 10,943,902 bp. Use segment r for 3,243 bp 2025-01-31 09:57:02,618 DEBUG chr14:19699751-21696251: Successfully fit background model for 1,930,489 bp. Use segment r for 0 bp 2025-01-31 09:57:02,965 DEBUG chr8:72412251-83565251: Successfully fit background model for 10,127,546 bp. Use segment r for 0 bp 2025-01-31 09:57:03,137 DEBUG chr8:83565251-85091251: Successfully fit background model for 1,497,855 bp. Use segment r for 0 bp 2025-01-31 09:57:04,197 DEBUG chr8:85091251-94159251: Successfully fit background model for 8,662,324 bp. Use segment r for 0 bp 2025-01-31 09:57:04,404 DEBUG chr14:21696251-37361501: Successfully fit background model for 14,504,098 bp. Use segment r for 0 bp 2025-01-31 09:57:04,469 DEBUG chr8:94159251-96804751: Successfully fit background model for 2,495,663 bp. Use segment r for 0 bp 2025-01-31 09:57:04,815 DEBUG chr14:37361501-40447251: Successfully fit background model for 2,771,769 bp. Use segment r for 0 bp 2025-01-31 09:57:05,230 DEBUG chr8:96804751-102358251: Successfully fit background model for 5,060,298 bp. Use segment r for 0 bp 2025-01-31 09:57:05,447 DEBUG chr8:102358251-104533751: Successfully fit background model for 2,067,186 bp. Use segment r for 0 bp 2025-01-31 09:57:06,139 DEBUG chr8:104533751-111849251: Successfully fit background model for 7,010,974 bp. Use segment r for 0 bp 2025-01-31 09:57:06,711 DEBUG chr14:40447251-50781251: Successfully fit background model for 7,007,695 bp. Use segment r for 2,372 bp 2025-01-31 09:57:06,874 DEBUG chr8:111849251-116866251: Successfully fit background model for 4,547,559 bp. Use segment r for 285,315 bp 2025-01-31 09:57:07,116 DEBUG chr8:116866251-119338751: Successfully fit background model for 2,400,243 bp. Use segment r for 0 bp 2025-01-31 09:57:07,180 DEBUG chr14:50781251-55533251: Successfully fit background model for 3,680,620 bp. Use segment r for 0 bp 2025-01-31 09:57:07,655 DEBUG chr8:119338751-124322251: Successfully fit background model for 4,765,247 bp. Use segment r for 0 bp 2025-01-31 09:57:08,153 DEBUG chr8:124322251-129401213: Successfully fit background model for 4,711,792 bp. Use segment r for 0 bp 2025-01-31 09:57:09,156 DEBUG chr9:3002500-13296251: Successfully fit background model for 9,011,884 bp. Use segment r for 0 bp 2025-01-31 09:57:09,339 DEBUG chr9:13296251-15015251: Successfully fit background model for 1,550,368 bp. Use segment r for 0 bp 2025-01-31 09:57:10,110 DEBUG chr14:55533251-80421751: Successfully fit background model for 23,120,532 bp. Use segment r for 0 bp 2025-01-31 09:57:10,203 DEBUG chr9:15015251-20574251: Successfully fit background model for 4,932,674 bp. Use segment r for 0 bp 2025-01-31 09:57:10,459 DEBUG chr9:20574251-21955251: Successfully fit background model for 1,330,423 bp. Use segment r for 0 bp 2025-01-31 09:57:10,658 DEBUG chr14:80421751-85885251: Successfully fit background model for 4,886,136 bp. Use segment r for 0 bp 2025-01-31 09:57:10,861 DEBUG chr14:85885251-87784751: Successfully fit background model for 1,744,852 bp. Use segment r for 0 bp 2025-01-31 09:57:12,190 DEBUG chr14:87784751-99044751: Successfully fit background model for 10,254,294 bp. Use segment r for 0 bp 2025-01-31 09:57:12,323 DEBUG chr9:21955251-38104251: Successfully fit background model for 15,079,285 bp. Use segment r for 0 bp 2025-01-31 09:57:12,806 DEBUG chr9:38104251-40755251: Successfully fit background model for 2,383,437 bp. Use segment r for 0 bp 2025-01-31 09:57:12,839 DEBUG chr9:40755251-40844251: Successfully fit background model for 84,951 bp. Use segment r for 0 bp 2025-01-31 09:57:15,136 DEBUG chr14:99044751-121257751: Successfully fit background model for 20,324,749 bp. Use segment r for 0 bp 2025-01-31 09:57:15,399 DEBUG chr9:40844251-57069751: Successfully fit background model for 15,592,747 bp. Use segment r for 0 bp 2025-01-31 09:57:15,517 DEBUG chr14:121257751-124902244: Successfully fit background model for 3,157,350 bp. Use segment r for 0 bp 2025-01-31 09:57:18,350 DEBUG chr9:57069751-66058751: Successfully fit background model for 8,752,800 bp. Use segment r for 0 bp 2025-01-31 09:57:19,697 DEBUG chr9:66058751-79157251: Successfully fit background model for 12,379,627 bp. Use segment r for 0 bp 2025-01-31 09:57:20,844 DEBUG chr9:79157251-90555251: Successfully fit background model for 9,960,208 bp. Use segment r for 0 bp 2025-01-31 09:57:21,138 DEBUG chr9:90555251-93651751: Successfully fit background model for 2,748,081 bp. Use segment r for 0 bp 2025-01-31 09:57:22,532 DEBUG chr9:93651751-106137751: Successfully fit background model for 11,891,225 bp. Use segment r for 0 bp 2025-01-31 09:57:23,230 DEBUG chr9:106137751-110612751: Successfully fit background model for 4,122,210 bp. Use segment r for 0 bp 2025-01-31 09:57:24,148 DEBUG chr9:110612751-120109751: Successfully fit background model for 8,990,559 bp. Use segment r for 0 bp 2025-01-31 09:57:24,601 DEBUG chr9:120109751-124595110: Successfully fit background model for 3,972,407 bp. Use segment r for 0 bp 2025-01-31 09:58:04,098 DEBUG chr11:3100500-3204251: Successfully fit background model for 76,714 bp. Use segment r for 0 bp 2025-01-31 09:58:04,469 DEBUG chr11:3204251-6886751: Successfully fit background model for 3,518,654 bp. Use segment r for 0 bp 2025-01-31 09:58:05,722 DEBUG chr11:6886751-18343251: Successfully fit background model for 10,258,367 bp. Use segment r for 0 bp 2025-01-31 09:58:06,360 DEBUG chr11:18343251-24875251: Successfully fit background model for 6,155,234 bp. Use segment r for 0 bp 2025-01-31 09:58:06,676 DEBUG chr11:24875251-28299751: Successfully fit background model for 3,032,596 bp. Use segment r for 0 bp 2025-01-31 09:58:07,537 DEBUG chr11:28299751-36596251: Successfully fit background model for 7,727,331 bp. Use segment r for 0 bp 2025-01-31 09:58:07,870 DEBUG chr11:36596251-40245751: Successfully fit background model for 3,454,150 bp. Use segment r for 0 bp 2025-01-31 09:58:08,800 DEBUG chr11:40245751-48774001: Successfully fit background model for 7,837,492 bp. Use segment r for 0 bp 2025-01-31 09:58:08,827 DEBUG chr11:48774001-48877751: Successfully fit background model for 100,895 bp. Use segment r for 0 bp 2025-01-31 09:58:09,888 DEBUG chr11:48877751-58299751: Successfully fit background model for 8,860,643 bp. Use segment r for 0 bp 2025-01-31 09:58:10,074 DEBUG chr11:58299751-60172751: Successfully fit background model for 1,802,767 bp. Use segment r for 0 bp 2025-01-31 09:58:11,074 DEBUG chr11:60172751-68965751: Successfully fit background model for 8,408,157 bp. Use segment r for 0 bp 2025-01-31 09:58:11,247 DEBUG chr11:68965751-70656251: Successfully fit background model for 1,651,045 bp. Use segment r for 0 bp 2025-01-31 09:58:11,694 DEBUG chr11:70656251-74825751: Successfully fit background model for 3,832,865 bp. Use segment r for 0 bp 2025-01-31 09:58:12,164 DEBUG chr11:74825751-79584251: Successfully fit background model for 4,625,318 bp. Use segment r for 0 bp 2025-01-31 09:58:12,477 DEBUG chr11:79584251-82763251: Successfully fit background model for 3,077,468 bp. Use segment r for 0 bp 2025-01-31 09:58:12,965 DEBUG chr11:82763251-87967751: Successfully fit background model for 4,974,926 bp. Use segment r for 0 bp 2025-01-31 09:58:13,263 DEBUG chr11:87967751-91187751: Successfully fit background model for 3,054,620 bp. Use segment r for 0 bp 2025-01-31 09:58:13,451 DEBUG chr11:91187751-93177751: Successfully fit background model for 1,857,278 bp. Use segment r for 0 bp 2025-01-31 09:58:13,558 DEBUG chr11:93177751-94182251: Successfully fit background model for 958,150 bp. Use segment r for 0 bp 2025-01-31 09:58:14,875 DEBUG chr12:3000500-5588251: Successfully fit background model for 2,383,495 bp. Use segment r for 0 bp 2025-01-31 09:58:15,179 DEBUG chr11:94182251-108502251: Successfully fit background model for 13,864,719 bp. Use segment r for 0 bp 2025-01-31 09:58:15,405 DEBUG chr11:108502251-110778001: Successfully fit background model for 2,178,925 bp. Use segment r for 0 bp 2025-01-31 09:58:15,821 DEBUG chr11:110778001-115222751: Successfully fit background model for 4,275,945 bp. Use segment r for 0 bp 2025-01-31 09:58:16,386 DEBUG chr13:3000500-21155751: Successfully fit background model for 15,922,249 bp. Use segment r for 0 bp 2025-01-31 09:58:16,459 DEBUG chr11:115222751-122082543: Successfully fit background model for 6,545,746 bp. Use segment r for 0 bp 2025-01-31 09:58:16,506 DEBUG chr13:21155751-22056251: Successfully fit background model for 807,216 bp. Use segment r for 0 bp 2025-01-31 09:58:16,640 DEBUG chr13:22056251-23264501: Successfully fit background model for 905,649 bp. Use segment r for 0 bp 2025-01-31 09:58:16,700 DEBUG chr13:23264501-23773751: Successfully fit background model for 470,144 bp. Use segment r for 0 bp 2025-01-31 09:58:16,913 DEBUG chr13:23773751-25798751: Successfully fit background model for 1,896,462 bp. Use segment r for 0 bp 2025-01-31 09:58:17,135 DEBUG chr13:25798751-28061751: Successfully fit background model for 2,008,848 bp. Use segment r for 0 bp 2025-01-31 09:58:17,515 DEBUG chr15:3050500-5087751: Successfully fit background model for 1,734,031 bp. Use segment r for 0 bp 2025-01-31 09:58:18,706 DEBUG chr15:5087751-15507251: Successfully fit background model for 9,549,310 bp. Use segment r for 0 bp 2025-01-31 09:58:18,980 DEBUG chr13:28061751-44654751: Successfully fit background model for 15,458,726 bp. Use segment r for 0 bp 2025-01-31 09:58:19,510 DEBUG chr15:15507251-23131751: Successfully fit background model for 6,798,489 bp. Use segment r for 0 bp 2025-01-31 09:58:19,641 DEBUG chr12:5588251-33146251: Successfully fit background model for 21,673,859 bp. Use segment r for 7,207 bp 2025-01-31 09:58:19,706 DEBUG chr15:23131751-25100251: Successfully fit background model for 1,739,563 bp. Use segment r for 0 bp 2025-01-31 09:58:19,845 DEBUG chr16:3101000-5766751: Successfully fit background model for 2,222,588 bp. Use segment r for 0 bp 2025-01-31 09:58:20,035 DEBUG chr16:5766751-7707751: Successfully fit background model for 1,893,046 bp. Use segment r for 0 bp 2025-01-31 09:58:20,767 DEBUG chr15:25100251-33563251: Successfully fit background model for 7,769,699 bp. Use segment r for 0 bp 2025-01-31 09:58:22,024 DEBUG chr16:7707751-25016751: Successfully fit background model for 16,066,286 bp. Use segment r for 0 bp 2025-01-31 09:58:22,105 DEBUG chr15:33563251-44847251: Successfully fit background model for 10,249,800 bp. Use segment r for 0 bp 2025-01-31 09:58:22,318 DEBUG chr13:44654751-64150751: Successfully fit background model for 17,896,188 bp. Use segment r for 84,799 bp 2025-01-31 09:58:22,359 DEBUG chr16:25016751-28464251: Successfully fit background model for 3,177,672 bp. Use segment r for 0 bp 2025-01-31 09:58:22,580 DEBUG chr15:44847251-50005751: Successfully fit background model for 4,626,704 bp. Use segment r for 0 bp 2025-01-31 09:58:22,938 DEBUG chr12:33146251-51690751: Successfully fit background model for 16,667,496 bp. Use segment r for 134,294 bp 2025-01-31 09:58:23,291 DEBUG chr15:50005751-57148501: Successfully fit background model for 6,517,951 bp. Use segment r for 0 bp 2025-01-31 09:58:23,547 DEBUG chr16:28464251-39166251: Successfully fit background model for 10,218,407 bp. Use segment r for 0 bp 2025-01-31 09:58:23,561 DEBUG chr15:57148501-59943251: Successfully fit background model for 2,668,438 bp. Use segment r for 0 bp 2025-01-31 09:58:23,568 DEBUG chr13:64150751-73251251: Successfully fit background model for 6,996,836 bp. Use segment r for 13,229 bp 2025-01-31 09:58:23,658 DEBUG chr13:73251251-73936751: Successfully fit background model for 673,345 bp. Use segment r for 0 bp 2025-01-31 09:58:23,677 DEBUG chr12:51690751-59011251: Successfully fit background model for 6,631,357 bp. Use segment r for 0 bp 2025-01-31 09:58:24,119 DEBUG chr13:73936751-78162251: Successfully fit background model for 3,764,346 bp. Use segment r for 0 bp 2025-01-31 09:58:24,135 DEBUG chr13:78162251-78213751: Successfully fit background model for 51,397 bp. Use segment r for 0 bp 2025-01-31 09:58:24,412 DEBUG chr13:78213751-80841251: Successfully fit background model for 2,356,038 bp. Use segment r for 0 bp 2025-01-31 09:58:24,697 DEBUG chr13:80841251-83753251: Successfully fit background model for 2,699,932 bp. Use segment r for 0 bp 2025-01-31 09:58:24,721 DEBUG chr12:59011251-69119751: Successfully fit background model for 8,996,822 bp. Use segment r for 0 bp 2025-01-31 09:58:25,080 DEBUG chr15:59943251-73022251: Successfully fit background model for 11,962,216 bp. Use segment r for 0 bp 2025-01-31 09:58:25,244 DEBUG chr16:39166251-52855251: Successfully fit background model for 12,539,803 bp. Use segment r for 0 bp 2025-01-31 09:58:25,372 DEBUG chr15:73022251-75882751: Successfully fit background model for 2,683,155 bp. Use segment r for 0 bp 2025-01-31 09:58:25,542 DEBUG chr16:52855251-55818751: Successfully fit background model for 2,644,546 bp. Use segment r for 0 bp 2025-01-31 09:58:25,698 DEBUG chr13:83753251-92483251: Successfully fit background model for 7,856,110 bp. Use segment r for 0 bp 2025-01-31 09:58:26,031 DEBUG chr16:55818751-61059501: Successfully fit background model for 4,655,547 bp. Use segment r for 0 bp 2025-01-31 09:58:26,070 DEBUG chr15:75882751-82378251: Successfully fit background model for 6,212,841 bp. Use segment r for 0 bp 2025-01-31 09:58:26,276 DEBUG chr12:69119751-83300251: Successfully fit background model for 13,419,752 bp. Use segment r for 0 bp 2025-01-31 09:58:26,655 DEBUG chr12:83300251-87146751: Successfully fit background model for 3,750,365 bp. Use segment r for 0 bp 2025-01-31 09:58:26,750 DEBUG chr13:92483251-101690251: Successfully fit background model for 8,673,270 bp. Use segment r for 0 bp 2025-01-31 09:58:28,288 DEBUG chr15:82378251-98509251: Successfully fit background model for 15,353,164 bp. Use segment r for 0 bp 2025-01-31 09:58:28,304 DEBUG chr13:101690251-115393251: Successfully fit background model for 12,817,354 bp. Use segment r for 0 bp 2025-01-31 09:58:28,705 DEBUG chr13:115393251-119427251: Successfully fit background model for 3,684,292 bp. Use segment r for 0 bp 2025-01-31 09:58:28,781 DEBUG chr15:98509251-103354251: Successfully fit background model for 4,692,105 bp. Use segment r for 0 bp 2025-01-31 09:58:28,824 DEBUG chr13:119427251-120421639: Successfully fit background model for 402,446 bp. Use segment r for 0 bp 2025-01-31 09:58:28,865 DEBUG chr15:103354251-104043685: Successfully fit background model for 442,303 bp. Use segment r for 0 bp 2025-01-31 09:58:29,053 DEBUG chr12:87146751-99204751: Successfully fit background model for 10,651,677 bp. Use segment r for 2,637 bp 2025-01-31 09:58:29,245 DEBUG chr16:61059501-87393251: Successfully fit background model for 23,886,434 bp. Use segment r for 0 bp 2025-01-31 09:58:29,527 DEBUG chr16:87393251-89888751: Successfully fit background model for 2,336,490 bp. Use segment r for 0 bp 2025-01-31 09:58:29,765 DEBUG chr12:99204751-105898751: Successfully fit background model for 6,289,868 bp. Use segment r for 0 bp 2025-01-31 09:58:30,207 DEBUG chr12:105898751-110418251: Successfully fit background model for 4,376,145 bp. Use segment r for 0 bp 2025-01-31 09:58:30,437 DEBUG chr16:89888751-98207768: Successfully fit background model for 7,919,656 bp. Use segment r for 0 bp 2025-01-31 09:58:30,473 DEBUG chr12:110418251-113090751: Successfully fit background model for 2,600,657 bp. Use segment r for 0 bp 2025-01-31 09:58:30,849 DEBUG chr17:3000500-16134251: Successfully fit background model for 11,073,661 bp. Use segment r for 0 bp 2025-01-31 09:58:31,181 DEBUG chr12:113090751-120129022: Successfully fit background model for 6,102,407 bp. Use segment r for 0 bp 2025-01-31 09:58:32,383 DEBUG chr17:16134251-23531251: Successfully fit background model for 6,087,532 bp. Use segment r for 853 bp 2025-01-31 09:58:34,346 DEBUG chr17:23531251-37034501: Successfully fit background model for 12,704,841 bp. Use segment r for 0 bp 2025-01-31 09:58:35,220 DEBUG chr17:37034501-43976751: Successfully fit background model for 6,044,171 bp. Use segment r for 0 bp 2025-01-31 09:58:35,432 DEBUG chr17:43976751-45550251: Successfully fit background model for 1,517,068 bp. Use segment r for 0 bp 2025-01-31 09:58:36,114 DEBUG chr17:45550251-50814751: Successfully fit background model for 5,107,922 bp. Use segment r for 0 bp 2025-01-31 09:58:36,646 DEBUG chr17:50814751-55931251: Successfully fit background model for 4,536,973 bp. Use segment r for 0 bp 2025-01-31 09:58:36,800 DEBUG chr17:55931251-57397751: Successfully fit background model for 1,418,422 bp. Use segment r for 0 bp 2025-01-31 09:58:37,325 DEBUG chr17:57397751-62418751: Successfully fit background model for 4,515,233 bp. Use segment r for 0 bp 2025-01-31 09:58:41,356 DEBUG chr17:62418751-89255751: Successfully fit background model for 25,308,159 bp. Use segment r for 0 bp 2025-01-31 09:58:42,158 DEBUG chr17:89255751-94987271: Successfully fit background model for 5,088,561 bp. Use segment r for 0 bp 2025-01-31 09:59:20,501 DEBUG chr19:3080000-7618751: Successfully fit background model for 4,234,514 bp. Use segment r for 0 bp 2025-01-31 09:59:20,573 DEBUG chr19:7618751-8221001: Successfully fit background model for 450,363 bp. Use segment r for 0 bp 2025-01-31 09:59:20,860 DEBUG chr19:8221001-11028251: Successfully fit background model for 2,357,326 bp. Use segment r for 0 bp 2025-01-31 09:59:22,093 DEBUG chr19:11028251-22686251: Successfully fit background model for 10,791,175 bp. Use segment r for 0 bp 2025-01-31 09:59:23,118 DEBUG chr19:22686251-32983751: Successfully fit background model for 9,845,534 bp. Use segment r for 0 bp 2025-01-31 09:59:23,339 DEBUG chr19:32983751-35414251: Successfully fit background model for 2,148,083 bp. Use segment r for 0 bp 2025-01-31 09:59:23,511 DEBUG chr18:3002000-34313751: Successfully fit background model for 28,626,126 bp. Use segment r for 0 bp 2025-01-31 09:59:23,883 DEBUG chr19:35414251-41791251: Successfully fit background model for 5,862,700 bp. Use segment r for 0 bp 2025-01-31 09:59:23,890 DEBUG chr18:34313751-38185751: Successfully fit background model for 3,677,837 bp. Use segment r for 0 bp 2025-01-31 09:59:24,508 DEBUG chr19:41791251-48633251: Successfully fit background model for 6,612,877 bp. Use segment r for 0 bp 2025-01-31 09:59:24,778 DEBUG chr19:48633251-51652751: Successfully fit background model for 2,792,733 bp. Use segment r for 0 bp 2025-01-31 09:59:25,831 DEBUG chr19:51652751-61431566: Successfully fit background model for 9,251,432 bp. Use segment r for 0 bp 2025-01-31 09:59:26,210 DEBUG chr18:38185751-60490251: Successfully fit background model for 20,676,266 bp. Use segment r for 0 bp 2025-01-31 09:59:26,914 DEBUG chr18:60490251-67645251: Successfully fit background model for 6,876,540 bp. Use segment r for 0 bp 2025-01-31 09:59:27,425 DEBUG chr18:67645251-73568751: Successfully fit background model for 5,511,867 bp. Use segment r for 0 bp 2025-01-31 09:59:27,814 DEBUG chr18:73568751-78024751: Successfully fit background model for 4,185,266 bp. Use segment r for 0 bp 2025-01-31 09:59:29,156 DEBUG chr18:78024751-90702639: Successfully fit background model for 11,425,187 bp. Use segment r for 0 bp 2025-01-31 10:00:28,817 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:00:28,818 INFO Calculating per-bp p-values 2025-01-31 10:00:28,820 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:00:28,887 DEBUG chr1: Calculating p-values 2025-01-31 10:00:28,891 DEBUG chr3: Calculating p-values 2025-01-31 10:00:28,891 DEBUG chr4: Calculating p-values 2025-01-31 10:00:28,892 DEBUG chr2: Calculating p-values 2025-01-31 10:00:28,892 DEBUG chrX: Calculating p-values 2025-01-31 10:00:28,893 DEBUG chr5: Calculating p-values 2025-01-31 10:00:56,464 DEBUG Saving p-values for chrX 2025-01-31 10:00:57,836 DEBUG Saving p-values for chr5 2025-01-31 10:00:58,935 DEBUG Saving p-values for chr4 2025-01-31 10:00:58,936 DEBUG Saving p-values for chr3 2025-01-31 10:01:03,562 DEBUG Saving p-values for chr2 2025-01-31 10:01:07,297 DEBUG Saving p-values for chr1 2025-01-31 10:01:24,450 DEBUG chr6: Calculating p-values 2025-01-31 10:01:25,593 DEBUG chr7: Calculating p-values 2025-01-31 10:01:26,055 DEBUG chr10: Calculating p-values 2025-01-31 10:01:28,809 DEBUG chr8: Calculating p-values 2025-01-31 10:01:36,204 DEBUG chr14: Calculating p-values 2025-01-31 10:01:41,029 DEBUG chr9: Calculating p-values 2025-01-31 10:01:46,387 DEBUG Saving p-values for chr10 2025-01-31 10:01:47,335 DEBUG Saving p-values for chr6 2025-01-31 10:01:52,051 DEBUG Saving p-values for chr7 2025-01-31 10:01:52,425 DEBUG Saving p-values for chr8 2025-01-31 10:01:54,087 DEBUG Saving p-values for chr14 2025-01-31 10:02:02,076 DEBUG Saving p-values for chr9 2025-01-31 10:02:05,714 DEBUG chr11: Calculating p-values 2025-01-31 10:02:11,645 DEBUG chr13: Calculating p-values 2025-01-31 10:02:11,901 DEBUG chr12: Calculating p-values 2025-01-31 10:02:13,905 DEBUG chr15: Calculating p-values 2025-01-31 10:02:14,236 DEBUG chr16: Calculating p-values 2025-01-31 10:02:22,051 DEBUG chr17: Calculating p-values 2025-01-31 10:02:30,339 DEBUG Saving p-values for chr12 2025-01-31 10:02:30,369 DEBUG Saving p-values for chr11 2025-01-31 10:02:31,437 DEBUG Saving p-values for chr16 2025-01-31 10:02:33,559 DEBUG Saving p-values for chr13 2025-01-31 10:02:35,522 DEBUG Saving p-values for chr15 2025-01-31 10:02:38,083 DEBUG Saving p-values for chr17 2025-01-31 10:02:45,557 DEBUG chrY: Calculating p-values 2025-01-31 10:02:47,503 DEBUG chr18: Calculating p-values 2025-01-31 10:02:48,539 DEBUG chr19: Calculating p-values 2025-01-31 10:02:58,241 DEBUG Saving p-values for chr19 2025-01-31 10:02:59,619 DEBUG Saving p-values for chr18 2025-01-31 10:03:13,444 DEBUG Results of calc_pvals emitted. 2025-01-31 10:03:13,444 INFO Converting threshold values to bigwig 2025-01-31 10:03:13,444 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:03:29,045 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:03:59,684 INFO Converting background quantile values to bigwig 2025-01-31 10:03:59,684 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:04:33,229 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:05:01,489 INFO Calculating per-bp FDRs 2025-01-31 10:05:01,490 DEBUG AG81955: Extracting raw P-values 2025-01-31 10:05:39,197 DEBUG AG81955: Computing FDR 2025-01-31 10:05:53,616 DEBUG AG81955: Saving FDRs to parquet 2025-01-31 10:07:01,026 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:07:01,031 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:07:01,031 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:07:04,223 DEBUG chr5: Calling hotspots 2025-01-31 10:07:04,407 DEBUG chr4: Calling hotspots 2025-01-31 10:07:04,532 DEBUG chr3: Calling hotspots 2025-01-31 10:07:04,563 DEBUG chrX: Calling hotspots 2025-01-31 10:07:04,813 DEBUG chr2: Calling hotspots 2025-01-31 10:07:05,067 DEBUG chr1: Calling hotspots 2025-01-31 10:07:08,442 DEBUG chr5: 2909 hotspots called 2025-01-31 10:07:08,732 DEBUG chr4: 2969 hotspots called 2025-01-31 10:07:08,950 DEBUG chr3: 2198 hotspots called 2025-01-31 10:07:09,201 DEBUG chrX: 2085 hotspots called 2025-01-31 10:07:09,726 DEBUG chr2: 3552 hotspots called 2025-01-31 10:07:10,463 DEBUG chr1: 3027 hotspots called 2025-01-31 10:07:11,151 DEBUG chr6: Calling hotspots 2025-01-31 10:07:11,467 DEBUG chr10: Calling hotspots 2025-01-31 10:07:11,539 DEBUG chr7: Calling hotspots 2025-01-31 10:07:11,633 DEBUG chr8: Calling hotspots 2025-01-31 10:07:11,923 DEBUG chr14: Calling hotspots 2025-01-31 10:07:12,612 DEBUG chr9: Calling hotspots 2025-01-31 10:07:15,073 DEBUG chr6: 2309 hotspots called 2025-01-31 10:07:15,209 DEBUG chr8: 2225 hotspots called 2025-01-31 10:07:15,294 DEBUG chr10: 2082 hotspots called 2025-01-31 10:07:15,441 DEBUG chr14: 1520 hotspots called 2025-01-31 10:07:15,782 DEBUG chr9: 2552 hotspots called 2025-01-31 10:07:15,790 DEBUG chr7: 2955 hotspots called 2025-01-31 10:07:17,323 DEBUG chr13: Calling hotspots 2025-01-31 10:07:17,396 DEBUG chr11: Calling hotspots 2025-01-31 10:07:17,457 DEBUG chr15: Calling hotspots 2025-01-31 10:07:17,653 DEBUG chr17: Calling hotspots 2025-01-31 10:07:17,818 DEBUG chr12: Calling hotspots 2025-01-31 10:07:17,906 DEBUG chr16: Calling hotspots 2025-01-31 10:07:19,883 DEBUG chr17: 2034 hotspots called 2025-01-31 10:07:19,989 DEBUG chr15: 1763 hotspots called 2025-01-31 10:07:20,224 DEBUG chr16: 1431 hotspots called 2025-01-31 10:07:20,428 DEBUG chr13: 2102 hotspots called 2025-01-31 10:07:20,442 DEBUG chr11: 3627 hotspots called 2025-01-31 10:07:20,663 DEBUG chr12: 1733 hotspots called 2025-01-31 10:07:20,906 DEBUG chr19: Calling hotspots 2025-01-31 10:07:21,128 DEBUG chr18: Calling hotspots 2025-01-31 10:07:22,288 DEBUG chr19: 1525 hotspots called 2025-01-31 10:07:23,109 DEBUG chr18: 1254 hotspots called 2025-01-31 10:07:23,345 DEBUG Results of call_hotspots emitted. 2025-01-31 10:07:23,381 INFO There are 45852 hotspots called at FDR=0.05 2025-01-31 10:07:26,385 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:07:26,386 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:07:34,629 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:07:34,805 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:07:34,826 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:07:34,990 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:07:36,120 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:07:37,866 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:07:42,252 DEBUG chr5: 3403 peaks called 2025-01-31 10:07:42,596 DEBUG chr3: 2666 peaks called 2025-01-31 10:07:43,077 DEBUG chr4: 3533 peaks called 2025-01-31 10:07:43,611 DEBUG chrX: 2295 peaks called 2025-01-31 10:07:44,653 DEBUG chr2: 4232 peaks called 2025-01-31 10:07:45,573 DEBUG chr1: 3624 peaks called 2025-01-31 10:07:49,442 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:07:49,719 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:07:50,277 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:07:50,661 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:07:51,047 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:07:51,589 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:07:56,951 DEBUG chr6: 2739 peaks called 2025-01-31 10:07:57,223 DEBUG chr10: 2492 peaks called 2025-01-31 10:07:57,298 DEBUG chr8: 2667 peaks called 2025-01-31 10:07:57,620 DEBUG chr14: 1791 peaks called 2025-01-31 10:07:57,938 DEBUG chr9: 3030 peaks called 2025-01-31 10:07:58,383 DEBUG chr7: 3578 peaks called 2025-01-31 10:08:02,782 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:08:02,836 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:08:02,908 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:08:03,002 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:08:03,144 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:08:03,151 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:08:05,623 DEBUG chr16: 1702 peaks called 2025-01-31 10:08:05,755 DEBUG chr17: 2496 peaks called 2025-01-31 10:08:05,956 DEBUG chr15: 2082 peaks called 2025-01-31 10:08:06,646 DEBUG chr13: 2579 peaks called 2025-01-31 10:08:06,736 DEBUG chr12: 2052 peaks called 2025-01-31 10:08:06,974 DEBUG chr11: 4402 peaks called 2025-01-31 10:08:07,961 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:08:08,313 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:08:09,595 DEBUG chr19: 1877 peaks called 2025-01-31 10:08:10,641 DEBUG chr18: 1480 peaks called 2025-01-31 10:08:11,188 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:08:11,244 INFO There are 54720 peaks called at FDR=0.05 2025-01-31 10:08:12,299 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:08:12,300 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:08:15,377 DEBUG chr5: Calling hotspots 2025-01-31 10:08:15,538 DEBUG chr3: Calling hotspots 2025-01-31 10:08:15,961 DEBUG chrX: Calling hotspots 2025-01-31 10:08:16,165 DEBUG chr4: Calling hotspots 2025-01-31 10:08:16,389 DEBUG chr1: Calling hotspots 2025-01-31 10:08:16,479 DEBUG chr2: Calling hotspots 2025-01-31 10:08:19,726 DEBUG chr5: 2495 hotspots called 2025-01-31 10:08:20,022 DEBUG chr3: 1945 hotspots called 2025-01-31 10:08:20,529 DEBUG chrX: 1475 hotspots called 2025-01-31 10:08:20,689 DEBUG chr4: 2617 hotspots called 2025-01-31 10:08:21,358 DEBUG chr2: 3119 hotspots called 2025-01-31 10:08:21,394 DEBUG chr1: 2603 hotspots called 2025-01-31 10:08:22,640 DEBUG chr6: Calling hotspots 2025-01-31 10:08:22,720 DEBUG chr7: Calling hotspots 2025-01-31 10:08:22,825 DEBUG chr10: Calling hotspots 2025-01-31 10:08:22,987 DEBUG chr8: Calling hotspots 2025-01-31 10:08:23,429 DEBUG chr9: Calling hotspots 2025-01-31 10:08:23,449 DEBUG chr14: Calling hotspots 2025-01-31 10:08:25,772 DEBUG chr10: 1788 hotspots called 2025-01-31 10:08:25,993 DEBUG chr8: 1950 hotspots called 2025-01-31 10:08:26,094 DEBUG chr7: 2617 hotspots called 2025-01-31 10:08:26,261 DEBUG chr14: 1305 hotspots called 2025-01-31 10:08:26,382 DEBUG chr9: 2239 hotspots called 2025-01-31 10:08:26,479 DEBUG chr6: 1981 hotspots called 2025-01-31 10:08:27,834 DEBUG chr11: Calling hotspots 2025-01-31 10:08:28,139 DEBUG chr13: Calling hotspots 2025-01-31 10:08:28,181 DEBUG chr16: Calling hotspots 2025-01-31 10:08:28,206 DEBUG chr12: Calling hotspots 2025-01-31 10:08:28,261 DEBUG chr15: Calling hotspots 2025-01-31 10:08:28,293 DEBUG chr17: Calling hotspots 2025-01-31 10:08:30,467 DEBUG chr16: 1251 hotspots called 2025-01-31 10:08:30,593 DEBUG chr17: 1814 hotspots called 2025-01-31 10:08:30,621 DEBUG chr15: 1542 hotspots called 2025-01-31 10:08:30,899 DEBUG chr11: 3205 hotspots called 2025-01-31 10:08:30,980 DEBUG chr13: 1808 hotspots called 2025-01-31 10:08:30,991 DEBUG chr12: 1485 hotspots called 2025-01-31 10:08:31,399 DEBUG chr19: Calling hotspots 2025-01-31 10:08:31,593 DEBUG chr18: Calling hotspots 2025-01-31 10:08:32,836 DEBUG chr19: 1368 hotspots called 2025-01-31 10:08:33,551 DEBUG chr18: 1063 hotspots called 2025-01-31 10:08:33,792 DEBUG Results of call_hotspots emitted. 2025-01-31 10:08:33,823 INFO There are 39670 hotspots called at FDR=0.01 2025-01-31 10:08:35,683 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:08:35,683 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:08:43,638 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:08:43,909 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:08:44,368 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:08:44,501 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:08:45,531 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:08:46,346 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:08:50,219 DEBUG chr5: 2905 peaks called 2025-01-31 10:08:50,897 DEBUG chr4: 3053 peaks called 2025-01-31 10:08:51,312 DEBUG chr3: 2333 peaks called 2025-01-31 10:08:51,433 DEBUG chrX: 1657 peaks called 2025-01-31 10:08:52,620 DEBUG chr2: 3686 peaks called 2025-01-31 10:08:53,404 DEBUG chr1: 3109 peaks called 2025-01-31 10:08:57,024 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:08:57,495 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:08:57,726 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:08:57,814 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:08:58,302 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:08:59,055 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:09:02,167 DEBUG chr6: 2313 peaks called 2025-01-31 10:09:02,317 DEBUG chr10: 2140 peaks called 2025-01-31 10:09:02,657 DEBUG chr8: 2316 peaks called 2025-01-31 10:09:02,975 DEBUG chr14: 1516 peaks called 2025-01-31 10:09:03,594 DEBUG chr7: 3134 peaks called 2025-01-31 10:09:03,861 DEBUG chr9: 2607 peaks called 2025-01-31 10:09:07,812 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:09:07,976 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:09:08,056 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:09:08,117 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:09:08,183 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:09:08,214 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:09:11,329 DEBUG chr15: 1815 peaks called 2025-01-31 10:09:11,517 DEBUG chr17: 2175 peaks called 2025-01-31 10:09:11,616 DEBUG chr16: 1464 peaks called 2025-01-31 10:09:11,992 DEBUG chr12: 1735 peaks called 2025-01-31 10:09:12,110 DEBUG chr13: 2204 peaks called 2025-01-31 10:09:12,382 DEBUG chr11: 3820 peaks called 2025-01-31 10:09:13,531 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:09:13,925 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:09:15,216 DEBUG chr19: 1635 peaks called 2025-01-31 10:09:16,792 DEBUG chr18: 1253 peaks called 2025-01-31 10:09:17,150 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:09:17,182 INFO There are 46870 peaks called at FDR=0.01 2025-01-31 10:09:18,172 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:09:18,173 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:09:21,725 DEBUG chr5: Calling hotspots 2025-01-31 10:09:21,825 DEBUG chr4: Calling hotspots 2025-01-31 10:09:21,847 DEBUG chr3: Calling hotspots 2025-01-31 10:09:22,145 DEBUG chrX: Calling hotspots 2025-01-31 10:09:22,255 DEBUG chr2: Calling hotspots 2025-01-31 10:09:22,599 DEBUG chr1: Calling hotspots 2025-01-31 10:09:27,832 DEBUG chr5: 2128 hotspots called 2025-01-31 10:09:27,945 DEBUG chr4: 2251 hotspots called 2025-01-31 10:09:28,001 DEBUG chr3: 1680 hotspots called 2025-01-31 10:09:28,669 DEBUG chrX: 1096 hotspots called 2025-01-31 10:09:29,347 DEBUG chr2: 2707 hotspots called 2025-01-31 10:09:29,416 DEBUG chr1: 2193 hotspots called 2025-01-31 10:09:30,874 DEBUG chr7: Calling hotspots 2025-01-31 10:09:31,001 DEBUG chr8: Calling hotspots 2025-01-31 10:09:31,068 DEBUG chr6: Calling hotspots 2025-01-31 10:09:31,139 DEBUG chr10: Calling hotspots 2025-01-31 10:09:31,687 DEBUG chr14: Calling hotspots 2025-01-31 10:09:31,781 DEBUG chr9: Calling hotspots 2025-01-31 10:09:36,883 DEBUG chr7: 2312 hotspots called 2025-01-31 10:09:37,037 DEBUG chr10: 1568 hotspots called 2025-01-31 10:09:37,150 DEBUG chr8: 1668 hotspots called 2025-01-31 10:09:37,298 DEBUG chr14: 1081 hotspots called 2025-01-31 10:09:37,390 DEBUG chr9: 1920 hotspots called 2025-01-31 10:09:37,643 DEBUG chr6: 1664 hotspots called 2025-01-31 10:09:39,242 DEBUG chr13: Calling hotspots 2025-01-31 10:09:39,332 DEBUG chr11: Calling hotspots 2025-01-31 10:09:39,539 DEBUG chr16: Calling hotspots 2025-01-31 10:09:39,622 DEBUG chr15: Calling hotspots 2025-01-31 10:09:39,720 DEBUG chr12: Calling hotspots 2025-01-31 10:09:39,903 DEBUG chr17: Calling hotspots 2025-01-31 10:09:43,849 DEBUG chr16: 1071 hotspots called 2025-01-31 10:09:44,015 DEBUG chr17: 1548 hotspots called 2025-01-31 10:09:44,054 DEBUG chr15: 1330 hotspots called 2025-01-31 10:09:44,106 DEBUG chr13: 1551 hotspots called 2025-01-31 10:09:44,266 DEBUG chr12: 1236 hotspots called 2025-01-31 10:09:44,270 DEBUG chr11: 2783 hotspots called 2025-01-31 10:09:44,772 DEBUG chr19: Calling hotspots 2025-01-31 10:09:44,983 DEBUG chr18: Calling hotspots 2025-01-31 10:09:47,408 DEBUG chr19: 1192 hotspots called 2025-01-31 10:09:48,405 DEBUG chr18: 878 hotspots called 2025-01-31 10:09:48,681 DEBUG Results of call_hotspots emitted. 2025-01-31 10:09:48,708 INFO There are 33857 hotspots called at FDR=0.001 2025-01-31 10:09:50,308 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:09:50,309 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:09:58,157 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:09:58,924 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:09:59,033 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:09:59,522 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:10:00,226 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:10:00,440 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:10:06,840 DEBUG chr5: 2429 peaks called 2025-01-31 10:10:08,379 DEBUG chr4: 2554 peaks called 2025-01-31 10:10:09,003 DEBUG chrX: 1229 peaks called 2025-01-31 10:10:09,096 DEBUG chr3: 1980 peaks called 2025-01-31 10:10:10,636 DEBUG chr2: 3107 peaks called 2025-01-31 10:10:11,095 DEBUG chr1: 2585 peaks called 2025-01-31 10:10:13,898 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:10:15,158 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:10:16,014 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:10:16,091 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:10:16,793 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:10:17,327 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:10:19,388 DEBUG chr6: 1925 peaks called 2025-01-31 10:10:20,100 DEBUG chr10: 1824 peaks called 2025-01-31 10:10:21,156 DEBUG chr14: 1243 peaks called 2025-01-31 10:10:21,396 DEBUG chr8: 1944 peaks called 2025-01-31 10:10:21,638 DEBUG chr9: 2185 peaks called 2025-01-31 10:10:21,698 DEBUG chr7: 2705 peaks called 2025-01-31 10:10:25,145 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:10:26,256 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:10:26,490 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:10:26,837 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:10:27,071 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:10:27,211 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:10:31,201 DEBUG chr17: 1803 peaks called 2025-01-31 10:10:31,343 DEBUG chr11: 3231 peaks called 2025-01-31 10:10:31,504 DEBUG chr16: 1240 peaks called 2025-01-31 10:10:31,949 DEBUG chr15: 1529 peaks called 2025-01-31 10:10:32,217 DEBUG chr13: 1844 peaks called 2025-01-31 10:10:32,541 DEBUG chr12: 1407 peaks called 2025-01-31 10:10:33,520 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:10:34,150 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:10:36,314 DEBUG chr19: 1383 peaks called 2025-01-31 10:10:38,092 DEBUG chr18: 1008 peaks called 2025-01-31 10:10:38,784 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:10:38,812 INFO There are 39155 peaks called at FDR=0.001 2025-01-31 10:10:39,601 INFO Saving density 2025-01-31 10:10:39,601 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:10:57,285 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:11:00,861 DEBUG Converting density to bigwig 2025-01-31 10:11:39,134 INFO Program finished