2025-01-31 09:31:53,410 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,414 INFO Extracting cutcounts from bam file 2025-01-31 09:33:09,330 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:09,372 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:09,375 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:09,376 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:09,377 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:09,378 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:09,388 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:10,134 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:33:10,332 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:33:10,480 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:33:10,566 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:33:10,662 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:33:10,826 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:33:10,983 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:33:11,301 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:33:11,303 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:33:11,345 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:33:11,530 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:33:11,710 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:33:11,964 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:33:12,050 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:33:12,060 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:33:12,574 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:33:12,574 INFO Total cutcounts = 11975502 2025-01-31 09:33:12,579 INFO Smoothing signal using MODWT 2025-01-31 09:33:12,581 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:33:12,628 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:12,633 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:12,633 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:12,634 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:12,636 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:12,637 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:56,383 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:56,946 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:59,960 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:02,478 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:27,153 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:41,184 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:43,756 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:49,262 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:55,539 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:59,987 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:04,588 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:28,898 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:16,905 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:20,038 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:20,441 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:36,249 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:39:36,249 INFO Estimating parameters of background model 2025-01-31 09:39:36,249 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:39:40,964 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:39:41,066 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:39:41,095 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:39:41,721 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:39:42,465 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:39:42,734 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:40:01,344 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:40:01,345 DEBUG chr5: Signal quantile: 0.992. signal threshold: 9. Best RMSEA: 0.016 2025-01-31 09:40:01,672 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:40:01,674 DEBUG chr4: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.018 2025-01-31 09:40:02,739 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:40:02,741 DEBUG chr3: Signal quantile: 0.994. signal threshold: 10. Best RMSEA: 0.020 2025-01-31 09:40:03,998 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:40:04,000 DEBUG chrX: Signal quantile: 0.995. signal threshold: 6. Best RMSEA: 0.036 2025-01-31 09:40:04,606 DEBUG chr5 total SNP count: 250528 2025-01-31 09:40:04,606 DEBUG chr5 length: 151834684 2025-01-31 09:40:04,606 DEBUG ----------------------------------------- 2025-01-31 09:40:04,607 INFO Processing SNPs in chr5 2025-01-31 09:40:04,857 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 250528)] 2025-01-31 09:40:05,027 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:05,350 DEBUG chr4 total SNP count: 253241 2025-01-31 09:40:05,351 DEBUG chr4 length: 156508116 2025-01-31 09:40:05,351 DEBUG ----------------------------------------- 2025-01-31 09:40:05,351 INFO Processing SNPs in chr4 2025-01-31 09:40:05,748 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 63022), (63022, 253241)] 2025-01-31 09:40:05,871 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:06,472 DEBUG chr3 total SNP count: 257772 2025-01-31 09:40:06,472 DEBUG chr3 length: 160039680 2025-01-31 09:40:06,472 DEBUG ----------------------------------------- 2025-01-31 09:40:06,472 INFO Processing SNPs in chr3 2025-01-31 09:40:06,731 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 257772)] 2025-01-31 09:40:06,908 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:07,206 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:40:07,267 DEBUG chr2: Signal quantile: 0.992. signal threshold: 10. Best RMSEA: 0.018 2025-01-31 09:40:07,387 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:40:07,441 DEBUG chr1: Signal quantile: 0.994. signal threshold: 11. Best RMSEA: 0.017 2025-01-31 09:40:08,000 DEBUG chrX total SNP count: 236341 2025-01-31 09:40:08,001 DEBUG chrX length: 171031299 2025-01-31 09:40:08,001 DEBUG ----------------------------------------- 2025-01-31 09:40:08,001 INFO Processing SNPs in chrX 2025-01-31 09:40:08,390 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32314), (32314, 32316), (32316, 32360), (32360, 169478), (169478, 236341)] 2025-01-31 09:40:08,503 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:10,872 DEBUG chr2 total SNP count: 308190 2025-01-31 09:40:10,872 DEBUG chr2 length: 182113224 2025-01-31 09:40:10,873 DEBUG ----------------------------------------- 2025-01-31 09:40:10,873 INFO Processing SNPs in chr2 2025-01-31 09:40:11,043 DEBUG chr1 total SNP count: 333175 2025-01-31 09:40:11,043 DEBUG chr1 length: 195471971 2025-01-31 09:40:11,043 DEBUG ----------------------------------------- 2025-01-31 09:40:11,043 INFO Processing SNPs in chr1 2025-01-31 09:40:11,336 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 300385), (300385, 308190)] 2025-01-31 09:40:11,366 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 333175)] 2025-01-31 09:40:11,540 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:11,598 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:12,408 DEBUG Segmenting atomic regions: 2025-01-31 09:40:12,510 DEBUG Processing 1/106 atomic regions from SNP 0 to 603 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:13,468 DEBUG Processing 2/106 atomic regions from SNP 303 to 905 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:13,546 DEBUG Segmenting atomic regions: 2025-01-31 09:40:13,656 DEBUG Processing 1/209 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:13,676 DEBUG Processing 3/106 atomic regions from SNP 605 to 1207 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:13,890 DEBUG Processing 4/106 atomic regions from SNP 907 to 1509 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:14,103 DEBUG Processing 5/106 atomic regions from SNP 1209 to 1811 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:14,314 DEBUG Processing 6/106 atomic regions from SNP 1511 to 2113 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:14,374 DEBUG Processing 2/209 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:14,523 DEBUG Processing 7/106 atomic regions from SNP 1813 to 2415 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:14,591 DEBUG Processing 3/209 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:14,733 DEBUG Processing 8/106 atomic regions from SNP 2115 to 2717 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:14,812 DEBUG Processing 4/209 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:14,957 DEBUG Processing 9/106 atomic regions from SNP 2417 to 3019 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:15,032 DEBUG Processing 5/209 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:15,179 DEBUG Processing 10/106 atomic regions from SNP 2719 to 3321 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:15,253 DEBUG Processing 6/209 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:15,395 DEBUG Processing 11/106 atomic regions from SNP 3021 to 3623 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:15,470 DEBUG Processing 7/209 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:15,610 DEBUG Processing 12/106 atomic regions from SNP 3323 to 3925 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:15,684 DEBUG Processing 8/209 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:15,819 DEBUG Processing 13/106 atomic regions from SNP 3625 to 4227 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:15,893 DEBUG Processing 9/209 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:16,059 DEBUG Processing 14/106 atomic regions from SNP 3927 to 4529 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:16,113 DEBUG Processing 10/209 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:16,305 DEBUG Processing 15/106 atomic regions from SNP 4229 to 4831 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:16,328 DEBUG Processing 11/209 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:16,543 DEBUG Processing 12/209 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:16,559 DEBUG Processing 16/106 atomic regions from SNP 4531 to 5133 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:16,762 DEBUG Processing 13/209 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:16,818 DEBUG Processing 17/106 atomic regions from SNP 4833 to 5435 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:16,984 DEBUG Processing 14/209 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:17,070 DEBUG Processing 18/106 atomic regions from SNP 5135 to 5737 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:17,200 DEBUG Processing 15/209 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:17,294 DEBUG Processing 19/106 atomic regions from SNP 5437 to 6039 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:17,412 DEBUG Processing 16/209 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:17,519 DEBUG Processing 20/106 atomic regions from SNP 5739 to 6341 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:17,625 DEBUG Processing 17/209 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:17,738 DEBUG Processing 21/106 atomic regions from SNP 6041 to 6643 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:17,836 DEBUG Processing 18/209 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:17,956 DEBUG Processing 22/106 atomic regions from SNP 6343 to 6945 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:18,052 DEBUG Processing 19/209 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:18,171 DEBUG Processing 23/106 atomic regions from SNP 6645 to 7247 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:18,274 DEBUG Processing 20/209 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:18,390 DEBUG Processing 24/106 atomic regions from SNP 6947 to 7549 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:18,489 DEBUG Processing 21/209 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:18,600 DEBUG Processing 25/106 atomic regions from SNP 7249 to 7851 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:18,703 DEBUG Processing 22/209 atomic regions from SNP 6321 to 6921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:18,812 DEBUG Processing 26/106 atomic regions from SNP 7551 to 8153 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:18,911 DEBUG Processing 23/209 atomic regions from SNP 6621 to 7221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:19,025 DEBUG Processing 27/106 atomic regions from SNP 7853 to 8455 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:19,124 DEBUG Processing 24/209 atomic regions from SNP 6921 to 7521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:19,235 DEBUG Processing 28/106 atomic regions from SNP 8155 to 8757 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:19,336 DEBUG Processing 25/209 atomic regions from SNP 7221 to 7821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:19,451 DEBUG Processing 29/106 atomic regions from SNP 8457 to 9059 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:19,554 DEBUG Processing 26/209 atomic regions from SNP 7521 to 8121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:19,668 DEBUG Processing 30/106 atomic regions from SNP 8759 to 9361 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:19,769 DEBUG Processing 27/209 atomic regions from SNP 7821 to 8421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:19,878 DEBUG Processing 31/106 atomic regions from SNP 9061 to 9663 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:19,982 DEBUG Processing 28/209 atomic regions from SNP 8121 to 8721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:20,088 DEBUG Processing 32/106 atomic regions from SNP 9363 to 9965 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:20,198 DEBUG Processing 29/209 atomic regions from SNP 8421 to 9021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:20,303 DEBUG Processing 33/106 atomic regions from SNP 9665 to 10267 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:20,413 DEBUG Processing 30/209 atomic regions from SNP 8721 to 9321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:20,513 DEBUG Processing 34/106 atomic regions from SNP 9967 to 10569 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:20,625 DEBUG Processing 31/209 atomic regions from SNP 9021 to 9621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:20,725 DEBUG Processing 35/106 atomic regions from SNP 10269 to 10871 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:20,838 DEBUG Processing 32/209 atomic regions from SNP 9321 to 9921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:20,938 DEBUG Processing 36/106 atomic regions from SNP 10571 to 11173 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:21,053 DEBUG Processing 33/209 atomic regions from SNP 9621 to 10221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:21,150 DEBUG Processing 37/106 atomic regions from SNP 10873 to 11475 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:21,271 DEBUG Processing 34/209 atomic regions from SNP 9921 to 10521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:21,393 DEBUG Processing 38/106 atomic regions from SNP 11175 to 11777 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:21,491 DEBUG Processing 35/209 atomic regions from SNP 10221 to 10821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:21,626 DEBUG Processing 39/106 atomic regions from SNP 11477 to 12079 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:21,705 DEBUG Processing 36/209 atomic regions from SNP 10521 to 11121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:21,841 DEBUG Processing 40/106 atomic regions from SNP 11779 to 12381 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:21,924 DEBUG Processing 37/209 atomic regions from SNP 10821 to 11421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:22,064 DEBUG Processing 41/106 atomic regions from SNP 12081 to 12683 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:22,145 DEBUG Processing 38/209 atomic regions from SNP 11121 to 11721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:22,281 DEBUG Processing 42/106 atomic regions from SNP 12383 to 12985 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:22,364 DEBUG Processing 39/209 atomic regions from SNP 11421 to 12021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:22,510 DEBUG Processing 43/106 atomic regions from SNP 12685 to 13287 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:22,591 DEBUG Processing 40/209 atomic regions from SNP 11721 to 12321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:22,735 DEBUG Processing 44/106 atomic regions from SNP 12987 to 13589 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:22,810 DEBUG Processing 41/209 atomic regions from SNP 12021 to 12621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:22,960 DEBUG Processing 45/106 atomic regions from SNP 13289 to 13891 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:23,029 DEBUG Processing 42/209 atomic regions from SNP 12321 to 12921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:23,188 DEBUG Processing 46/106 atomic regions from SNP 13591 to 14193 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:23,246 DEBUG Processing 43/209 atomic regions from SNP 12621 to 13221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:23,401 DEBUG Processing 47/106 atomic regions from SNP 13893 to 14495 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:23,477 DEBUG Processing 44/209 atomic regions from SNP 12921 to 13521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:23,619 DEBUG Processing 48/106 atomic regions from SNP 14195 to 14797 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:23,719 DEBUG Processing 45/209 atomic regions from SNP 13221 to 13821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:23,834 DEBUG Processing 49/106 atomic regions from SNP 14497 to 15099 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:23,941 DEBUG Processing 46/209 atomic regions from SNP 13521 to 14121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:24,048 DEBUG Processing 50/106 atomic regions from SNP 14799 to 15401 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:24,158 DEBUG Processing 47/209 atomic regions from SNP 13821 to 14421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:24,268 DEBUG Processing 51/106 atomic regions from SNP 15101 to 15703 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:24,383 DEBUG Processing 48/209 atomic regions from SNP 14121 to 14721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:24,485 DEBUG Processing 52/106 atomic regions from SNP 15403 to 16005 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:24,605 DEBUG Processing 49/209 atomic regions from SNP 14421 to 15021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:24,696 DEBUG Processing 53/106 atomic regions from SNP 15705 to 16307 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:24,826 DEBUG Processing 50/209 atomic regions from SNP 14721 to 15321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:24,906 DEBUG Processing 54/106 atomic regions from SNP 16007 to 16609 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:25,049 DEBUG Processing 51/209 atomic regions from SNP 15021 to 15621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:25,119 DEBUG Processing 55/106 atomic regions from SNP 16309 to 16911 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:25,275 DEBUG Processing 52/209 atomic regions from SNP 15321 to 15921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:25,334 DEBUG Processing 56/106 atomic regions from SNP 16611 to 17213 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:25,496 DEBUG Processing 53/209 atomic regions from SNP 15621 to 16221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:25,547 DEBUG Processing 57/106 atomic regions from SNP 16913 to 17515 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:25,713 DEBUG Processing 54/209 atomic regions from SNP 15921 to 16521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:25,760 DEBUG Processing 58/106 atomic regions from SNP 17215 to 17817 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:25,933 DEBUG Processing 55/209 atomic regions from SNP 16221 to 16821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:25,971 DEBUG Processing 59/106 atomic regions from SNP 17517 to 18119 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:26,149 DEBUG Processing 56/209 atomic regions from SNP 16521 to 17121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:26,182 DEBUG Processing 60/106 atomic regions from SNP 17819 to 18421 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:26,365 DEBUG Processing 57/209 atomic regions from SNP 16821 to 17421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:26,397 DEBUG Processing 61/106 atomic regions from SNP 18121 to 18723 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:26,578 DEBUG Processing 58/209 atomic regions from SNP 17121 to 17721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:26,613 DEBUG Processing 62/106 atomic regions from SNP 18423 to 19025 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:26,792 DEBUG Processing 59/209 atomic regions from SNP 17421 to 18021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:26,828 DEBUG Processing 63/106 atomic regions from SNP 18725 to 19327 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:27,006 DEBUG Processing 60/209 atomic regions from SNP 17721 to 18321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:27,040 DEBUG Processing 64/106 atomic regions from SNP 19027 to 19629 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:27,223 DEBUG Processing 61/209 atomic regions from SNP 18021 to 18621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:27,255 DEBUG Processing 65/106 atomic regions from SNP 19329 to 19931 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:27,441 DEBUG Processing 62/209 atomic regions from SNP 18321 to 18921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:27,469 DEBUG Processing 66/106 atomic regions from SNP 19631 to 20233 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:27,661 DEBUG Processing 63/209 atomic regions from SNP 18621 to 19221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:27,686 DEBUG Processing 67/106 atomic regions from SNP 19933 to 20535 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:27,884 DEBUG Processing 64/209 atomic regions from SNP 18921 to 19521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:27,904 DEBUG Processing 68/106 atomic regions from SNP 20235 to 20837 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:28,104 DEBUG Processing 65/209 atomic regions from SNP 19221 to 19821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:28,124 DEBUG Processing 69/106 atomic regions from SNP 20537 to 21139 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:28,328 DEBUG Processing 66/209 atomic regions from SNP 19521 to 20121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:28,349 DEBUG Processing 70/106 atomic regions from SNP 20839 to 21441 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:28,549 DEBUG Processing 67/209 atomic regions from SNP 19821 to 20421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:28,570 DEBUG Processing 71/106 atomic regions from SNP 21141 to 21743 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:28,766 DEBUG Processing 68/209 atomic regions from SNP 20121 to 20721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:28,787 DEBUG Processing 72/106 atomic regions from SNP 21443 to 22045 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:28,983 DEBUG Processing 69/209 atomic regions from SNP 20421 to 21021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:28,997 DEBUG Processing 73/106 atomic regions from SNP 21745 to 22347 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:29,202 DEBUG Processing 70/209 atomic regions from SNP 20721 to 21321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:29,212 DEBUG Processing 74/106 atomic regions from SNP 22047 to 22649 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:29,427 DEBUG Processing 71/209 atomic regions from SNP 21021 to 21621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:29,431 DEBUG Processing 75/106 atomic regions from SNP 22349 to 22951 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:29,649 DEBUG Processing 72/209 atomic regions from SNP 21321 to 21921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:29,651 DEBUG Processing 76/106 atomic regions from SNP 22651 to 23253 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:29,872 DEBUG Processing 73/209 atomic regions from SNP 21621 to 22221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:29,873 DEBUG Processing 77/106 atomic regions from SNP 22953 to 23555 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:30,087 DEBUG Processing 78/106 atomic regions from SNP 23255 to 23857 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:30,093 DEBUG Processing 74/209 atomic regions from SNP 21921 to 22521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:30,306 DEBUG Processing 79/106 atomic regions from SNP 23557 to 24159 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:30,315 DEBUG Processing 75/209 atomic regions from SNP 22221 to 22821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:30,519 DEBUG Processing 80/106 atomic regions from SNP 23859 to 24461 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:30,537 DEBUG Processing 76/209 atomic regions from SNP 22521 to 23121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:30,731 DEBUG Processing 81/106 atomic regions from SNP 24161 to 24763 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:30,752 DEBUG Processing 77/209 atomic regions from SNP 22821 to 23421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:30,943 DEBUG Processing 82/106 atomic regions from SNP 24463 to 25065 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:30,968 DEBUG Processing 78/209 atomic regions from SNP 23121 to 23721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:31,166 DEBUG Processing 83/106 atomic regions from SNP 24765 to 25367 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:31,196 DEBUG Processing 79/209 atomic regions from SNP 23421 to 24021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:31,381 DEBUG Processing 84/106 atomic regions from SNP 25067 to 25669 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:31,438 DEBUG Processing 80/209 atomic regions from SNP 23721 to 24321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:31,597 DEBUG Processing 85/106 atomic regions from SNP 25369 to 25971 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:31,654 DEBUG Processing 81/209 atomic regions from SNP 24021 to 24621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:31,832 DEBUG Processing 86/106 atomic regions from SNP 25671 to 26273 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:31,871 DEBUG Processing 82/209 atomic regions from SNP 24321 to 24921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:32,051 DEBUG Processing 87/106 atomic regions from SNP 25973 to 26575 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:32,089 DEBUG Processing 83/209 atomic regions from SNP 24621 to 25221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:32,270 DEBUG Processing 88/106 atomic regions from SNP 26275 to 26877 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:32,305 DEBUG Processing 84/209 atomic regions from SNP 24921 to 25521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:32,490 DEBUG Processing 89/106 atomic regions from SNP 26577 to 27179 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:32,521 DEBUG Processing 85/209 atomic regions from SNP 25221 to 25821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:32,709 DEBUG Processing 90/106 atomic regions from SNP 26879 to 27481 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:32,738 DEBUG Processing 86/209 atomic regions from SNP 25521 to 26121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:32,930 DEBUG Processing 91/106 atomic regions from SNP 27181 to 27783 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:32,956 DEBUG Processing 87/209 atomic regions from SNP 25821 to 26421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:33,152 DEBUG Processing 92/106 atomic regions from SNP 27483 to 28085 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:33,180 DEBUG Processing 88/209 atomic regions from SNP 26121 to 26721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:33,372 DEBUG Processing 93/106 atomic regions from SNP 27785 to 28387 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:33,400 DEBUG Processing 89/209 atomic regions from SNP 26421 to 27021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:33,594 DEBUG Processing 94/106 atomic regions from SNP 28087 to 28689 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:33,618 DEBUG Processing 90/209 atomic regions from SNP 26721 to 27321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:33,805 DEBUG Processing 95/106 atomic regions from SNP 28389 to 28991 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:33,834 DEBUG Processing 91/209 atomic regions from SNP 27021 to 27621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,018 DEBUG Processing 96/106 atomic regions from SNP 28691 to 29293 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,047 DEBUG Processing 92/209 atomic regions from SNP 27321 to 27921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,231 DEBUG Processing 97/106 atomic regions from SNP 28993 to 29595 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,262 DEBUG Processing 93/209 atomic regions from SNP 27621 to 28221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,451 DEBUG Processing 98/106 atomic regions from SNP 29295 to 29897 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,481 DEBUG Processing 94/209 atomic regions from SNP 27921 to 28521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,665 DEBUG Processing 99/106 atomic regions from SNP 29597 to 30199 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,700 DEBUG Processing 95/209 atomic regions from SNP 28221 to 28821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:34,882 DEBUG Processing 100/106 atomic regions from SNP 29899 to 30501 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:34,921 DEBUG Processing 96/209 atomic regions from SNP 28521 to 29121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,078 DEBUG Segmenting atomic regions: 2025-01-31 09:40:35,102 DEBUG Processing 101/106 atomic regions from SNP 30201 to 30803 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,143 DEBUG Processing 97/209 atomic regions from SNP 28821 to 29421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,185 DEBUG Processing 1/834 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:35,323 DEBUG Processing 102/106 atomic regions from SNP 30503 to 31105 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,364 DEBUG Processing 98/209 atomic regions from SNP 29121 to 29721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,546 DEBUG Processing 103/106 atomic regions from SNP 30805 to 31407 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,587 DEBUG Processing 99/209 atomic regions from SNP 29421 to 30021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,773 DEBUG Processing 104/106 atomic regions from SNP 31107 to 31709 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:35,807 DEBUG Processing 100/209 atomic regions from SNP 29721 to 30321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:35,899 DEBUG Processing 2/834 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:35,990 DEBUG Processing 105/106 atomic regions from SNP 31409 to 32011 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:36,024 DEBUG Processing 101/209 atomic regions from SNP 30021 to 30621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,112 DEBUG Processing 3/834 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,208 DEBUG Processing 106/106 atomic regions from SNP 31711 to 32313 for chrX (subchromosome 1 of 5). 2025-01-31 09:40:36,241 DEBUG Processing 102/209 atomic regions from SNP 30321 to 30921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,321 DEBUG Unique SNPs positions in subchromosome 1: 32314 2025-01-31 09:40:36,331 DEBUG Processing 4/834 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,356 DEBUG Subchromosome time: 27.85359862993937, subchromosome SNPs: 32314 2025-01-31 09:40:36,390 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:36,458 DEBUG Processing 103/209 atomic regions from SNP 30621 to 31221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,548 DEBUG Processing 5/834 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,666 DEBUG Processing 104/209 atomic regions from SNP 30921 to 31521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,768 DEBUG Processing 6/834 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:36,876 DEBUG Processing 105/209 atomic regions from SNP 31221 to 31821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:36,982 DEBUG Processing 7/834 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,085 DEBUG Processing 106/209 atomic regions from SNP 31521 to 32121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,200 DEBUG Processing 8/834 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,299 DEBUG Processing 107/209 atomic regions from SNP 31821 to 32421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,424 DEBUG Processing 9/834 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,522 DEBUG Processing 108/209 atomic regions from SNP 32121 to 32721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,644 DEBUG Processing 10/834 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,738 DEBUG Processing 109/209 atomic regions from SNP 32421 to 33021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:37,860 DEBUG Processing 11/834 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:37,949 DEBUG Processing 110/209 atomic regions from SNP 32721 to 33321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,079 DEBUG Processing 12/834 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,162 DEBUG Processing 111/209 atomic regions from SNP 33021 to 33621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,294 DEBUG Processing 13/834 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,375 DEBUG Processing 112/209 atomic regions from SNP 33321 to 33921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,508 DEBUG Processing 14/834 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,587 DEBUG Processing 113/209 atomic regions from SNP 33621 to 34221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,720 DEBUG Processing 15/834 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:38,795 DEBUG Segmenting atomic regions: 2025-01-31 09:40:38,801 DEBUG Processing 114/209 atomic regions from SNP 33921 to 34521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:38,911 DEBUG Processing 1/858 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:38,932 DEBUG Processing 16/834 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,014 DEBUG Processing 115/209 atomic regions from SNP 34221 to 34821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,150 DEBUG Processing 17/834 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,226 DEBUG Processing 116/209 atomic regions from SNP 34521 to 35121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,368 DEBUG Processing 18/834 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,440 DEBUG Processing 117/209 atomic regions from SNP 34821 to 35421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,588 DEBUG Processing 19/834 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,656 DEBUG Processing 118/209 atomic regions from SNP 35121 to 35721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,699 DEBUG Processing 2/858 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:39,808 DEBUG Processing 20/834 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:39,871 DEBUG Processing 119/209 atomic regions from SNP 35421 to 36021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:39,918 DEBUG Processing 3/858 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,028 DEBUG Processing 21/834 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,089 DEBUG Processing 120/209 atomic regions from SNP 35721 to 36321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,141 DEBUG Processing 4/858 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,245 DEBUG Processing 22/834 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,310 DEBUG Processing 121/209 atomic regions from SNP 36021 to 36621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,364 DEBUG Processing 5/858 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,459 DEBUG Processing 23/834 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,527 DEBUG Processing 122/209 atomic regions from SNP 36321 to 36921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,589 DEBUG Processing 6/858 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,669 DEBUG Processing 24/834 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,743 DEBUG Processing 123/209 atomic regions from SNP 36621 to 37221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:40,813 DEBUG Processing 7/858 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:40,880 DEBUG Processing 25/834 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:40,957 DEBUG Processing 124/209 atomic regions from SNP 36921 to 37521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,038 DEBUG Processing 8/858 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,091 DEBUG Processing 26/834 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,170 DEBUG Processing 125/209 atomic regions from SNP 37221 to 37821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,261 DEBUG Processing 9/858 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,301 DEBUG Processing 27/834 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,386 DEBUG Processing 126/209 atomic regions from SNP 37521 to 38121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,485 DEBUG Processing 10/858 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,513 DEBUG Processing 28/834 atomic regions from SNP 8127 to 8727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,602 DEBUG Processing 127/209 atomic regions from SNP 37821 to 38421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,704 DEBUG Processing 11/858 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,726 DEBUG Processing 29/834 atomic regions from SNP 8427 to 9027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:41,817 DEBUG Processing 128/209 atomic regions from SNP 38121 to 38721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:41,923 DEBUG Processing 12/858 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:41,938 DEBUG Processing 30/834 atomic regions from SNP 8727 to 9327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,037 DEBUG Processing 129/209 atomic regions from SNP 38421 to 39021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,145 DEBUG Processing 13/858 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,149 DEBUG Processing 31/834 atomic regions from SNP 9027 to 9627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,253 DEBUG Processing 130/209 atomic regions from SNP 38721 to 39321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,361 DEBUG Processing 32/834 atomic regions from SNP 9327 to 9927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,366 DEBUG Processing 14/858 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,471 DEBUG Processing 131/209 atomic regions from SNP 39021 to 39621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,574 DEBUG Processing 33/834 atomic regions from SNP 9627 to 10227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,588 DEBUG Processing 15/858 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,688 DEBUG Processing 132/209 atomic regions from SNP 39321 to 39921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:42,788 DEBUG Processing 34/834 atomic regions from SNP 9927 to 10527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:42,807 DEBUG Processing 16/858 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:42,895 DEBUG Processing 133/209 atomic regions from SNP 39621 to 40221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,000 DEBUG Processing 35/834 atomic regions from SNP 10227 to 10827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,023 DEBUG Processing 17/858 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,104 DEBUG Processing 134/209 atomic regions from SNP 39921 to 40521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,213 DEBUG Processing 36/834 atomic regions from SNP 10527 to 11127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,241 DEBUG Processing 18/858 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,314 DEBUG Processing 135/209 atomic regions from SNP 40221 to 40821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,424 DEBUG Processing 37/834 atomic regions from SNP 10827 to 11427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,455 DEBUG Processing 19/858 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,524 DEBUG Processing 136/209 atomic regions from SNP 40521 to 41121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,635 DEBUG Processing 38/834 atomic regions from SNP 11127 to 11727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,670 DEBUG Processing 20/858 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,733 DEBUG Processing 137/209 atomic regions from SNP 40821 to 41421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:43,846 DEBUG Processing 39/834 atomic regions from SNP 11427 to 12027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:43,888 DEBUG Processing 21/858 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:43,945 DEBUG Processing 138/209 atomic regions from SNP 41121 to 41721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,056 DEBUG Processing 40/834 atomic regions from SNP 11727 to 12327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,104 DEBUG Processing 22/858 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,155 DEBUG Processing 139/209 atomic regions from SNP 41421 to 42021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,269 DEBUG Processing 41/834 atomic regions from SNP 12027 to 12627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,326 DEBUG Processing 23/858 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,368 DEBUG Processing 140/209 atomic regions from SNP 41721 to 42321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,483 DEBUG Processing 42/834 atomic regions from SNP 12327 to 12927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,542 DEBUG Processing 24/858 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,579 DEBUG Processing 141/209 atomic regions from SNP 42021 to 42621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,700 DEBUG Processing 43/834 atomic regions from SNP 12627 to 13227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,755 DEBUG Processing 25/858 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:44,791 DEBUG Processing 142/209 atomic regions from SNP 42321 to 42921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:44,912 DEBUG Processing 44/834 atomic regions from SNP 12927 to 13527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:44,970 DEBUG Processing 26/858 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,001 DEBUG Processing 143/209 atomic regions from SNP 42621 to 43221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,125 DEBUG Processing 45/834 atomic regions from SNP 13227 to 13827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,184 DEBUG Processing 27/858 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,212 DEBUG Processing 144/209 atomic regions from SNP 42921 to 43521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,337 DEBUG Processing 46/834 atomic regions from SNP 13527 to 14127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,400 DEBUG Processing 28/858 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,423 DEBUG Processing 145/209 atomic regions from SNP 43221 to 43821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,550 DEBUG Processing 47/834 atomic regions from SNP 13827 to 14427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,611 DEBUG Processing 29/858 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,631 DEBUG Processing 146/209 atomic regions from SNP 43521 to 44121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,768 DEBUG Processing 48/834 atomic regions from SNP 14127 to 14727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:45,828 DEBUG Processing 30/858 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:45,843 DEBUG Processing 147/209 atomic regions from SNP 43821 to 44421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:45,984 DEBUG Processing 49/834 atomic regions from SNP 14427 to 15027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,041 DEBUG Processing 31/858 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,053 DEBUG Processing 148/209 atomic regions from SNP 44121 to 44721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,196 DEBUG Processing 50/834 atomic regions from SNP 14727 to 15327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,255 DEBUG Processing 32/858 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,261 DEBUG Processing 149/209 atomic regions from SNP 44421 to 45021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,407 DEBUG Processing 51/834 atomic regions from SNP 15027 to 15627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,467 DEBUG Processing 33/858 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,471 DEBUG Processing 150/209 atomic regions from SNP 44721 to 45321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,618 DEBUG Processing 52/834 atomic regions from SNP 15327 to 15927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,680 DEBUG Processing 151/209 atomic regions from SNP 45021 to 45621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,681 DEBUG Processing 34/858 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:46,826 DEBUG Processing 53/834 atomic regions from SNP 15627 to 16227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:46,888 DEBUG Processing 152/209 atomic regions from SNP 45321 to 45921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:46,891 DEBUG Processing 35/858 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,036 DEBUG Processing 54/834 atomic regions from SNP 15927 to 16527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,096 DEBUG Processing 153/209 atomic regions from SNP 45621 to 46221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,103 DEBUG Processing 36/858 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,246 DEBUG Processing 55/834 atomic regions from SNP 16227 to 16827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,307 DEBUG Processing 154/209 atomic regions from SNP 45921 to 46521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,316 DEBUG Processing 37/858 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,437 DEBUG Segmenting atomic regions: 2025-01-31 09:40:47,460 DEBUG Processing 56/834 atomic regions from SNP 16527 to 17127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,518 DEBUG Processing 155/209 atomic regions from SNP 46221 to 46821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,532 DEBUG Processing 38/858 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,573 DEBUG Processing 1/1000 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:47,679 DEBUG Processing 57/834 atomic regions from SNP 16827 to 17427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,729 DEBUG Processing 156/209 atomic regions from SNP 46521 to 47121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,745 DEBUG Processing 39/858 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:47,889 DEBUG Processing 58/834 atomic regions from SNP 17127 to 17727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:47,937 DEBUG Processing 157/209 atomic regions from SNP 46821 to 47421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:47,959 DEBUG Processing 40/858 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,099 DEBUG Processing 59/834 atomic regions from SNP 17427 to 18027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,144 DEBUG Processing 158/209 atomic regions from SNP 47121 to 47721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,170 DEBUG Processing 41/858 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,275 DEBUG Processing 2/1000 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:48,307 DEBUG Processing 60/834 atomic regions from SNP 17727 to 18327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,351 DEBUG Processing 159/209 atomic regions from SNP 47421 to 48021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,383 DEBUG Processing 42/858 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,512 DEBUG Processing 3/1000 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:48,517 DEBUG Processing 61/834 atomic regions from SNP 18027 to 18627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,561 DEBUG Processing 160/209 atomic regions from SNP 47721 to 48321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,594 DEBUG Processing 43/858 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,733 DEBUG Processing 62/834 atomic regions from SNP 18327 to 18927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,750 DEBUG Processing 4/1000 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:48,771 DEBUG Processing 161/209 atomic regions from SNP 48021 to 48621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,808 DEBUG Processing 44/858 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:48,949 DEBUG Processing 63/834 atomic regions from SNP 18627 to 19227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:48,985 DEBUG Processing 162/209 atomic regions from SNP 48321 to 48921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:48,993 DEBUG Processing 5/1000 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,022 DEBUG Processing 45/858 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,167 DEBUG Processing 64/834 atomic regions from SNP 18927 to 19527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,198 DEBUG Processing 163/209 atomic regions from SNP 48621 to 49221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,234 DEBUG Processing 6/1000 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,240 DEBUG Processing 46/858 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,382 DEBUG Processing 65/834 atomic regions from SNP 19227 to 19827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,428 DEBUG Processing 164/209 atomic regions from SNP 48921 to 49521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,458 DEBUG Processing 47/858 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,476 DEBUG Processing 7/1000 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,594 DEBUG Processing 66/834 atomic regions from SNP 19527 to 20127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,658 DEBUG Processing 165/209 atomic regions from SNP 49221 to 49821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,678 DEBUG Processing 48/858 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,721 DEBUG Processing 8/1000 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:49,805 DEBUG Processing 67/834 atomic regions from SNP 19827 to 20427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:49,873 DEBUG Processing 166/209 atomic regions from SNP 49521 to 50121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:49,896 DEBUG Processing 49/858 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:49,960 DEBUG Processing 9/1000 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,014 DEBUG Processing 68/834 atomic regions from SNP 20127 to 20727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,086 DEBUG Processing 167/209 atomic regions from SNP 49821 to 50421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,115 DEBUG Processing 50/858 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,200 DEBUG Processing 10/1000 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,229 DEBUG Processing 69/834 atomic regions from SNP 20427 to 21027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,298 DEBUG Processing 168/209 atomic regions from SNP 50121 to 50721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,330 DEBUG Processing 51/858 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,445 DEBUG Processing 11/1000 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,451 DEBUG Processing 70/834 atomic regions from SNP 20727 to 21327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,513 DEBUG Processing 169/209 atomic regions from SNP 50421 to 51021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,550 DEBUG Processing 52/858 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,667 DEBUG Processing 71/834 atomic regions from SNP 21027 to 21627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,687 DEBUG Processing 12/1000 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,723 DEBUG Processing 170/209 atomic regions from SNP 50721 to 51321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,763 DEBUG Processing 53/858 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:50,881 DEBUG Processing 72/834 atomic regions from SNP 21327 to 21927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:50,927 DEBUG Processing 13/1000 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:50,933 DEBUG Processing 171/209 atomic regions from SNP 51021 to 51621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:50,977 DEBUG Processing 54/858 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,098 DEBUG Processing 73/834 atomic regions from SNP 21627 to 22227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,145 DEBUG Processing 172/209 atomic regions from SNP 51321 to 51921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,167 DEBUG Processing 14/1000 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,189 DEBUG Processing 55/858 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,310 DEBUG Processing 74/834 atomic regions from SNP 21927 to 22527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,355 DEBUG Processing 173/209 atomic regions from SNP 51621 to 52221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,402 DEBUG Processing 56/858 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,404 DEBUG Processing 15/1000 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,520 DEBUG Processing 75/834 atomic regions from SNP 22227 to 22827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,563 DEBUG Processing 174/209 atomic regions from SNP 51921 to 52521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,611 DEBUG Processing 57/858 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,638 DEBUG Processing 16/1000 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,731 DEBUG Processing 76/834 atomic regions from SNP 22527 to 23127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,773 DEBUG Processing 175/209 atomic regions from SNP 52221 to 52821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:51,824 DEBUG Processing 58/858 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:51,873 DEBUG Processing 17/1000 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:51,943 DEBUG Processing 77/834 atomic regions from SNP 22827 to 23427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:51,984 DEBUG Processing 176/209 atomic regions from SNP 52521 to 53121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,034 DEBUG Processing 59/858 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,108 DEBUG Processing 18/1000 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,154 DEBUG Processing 78/834 atomic regions from SNP 23127 to 23727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,196 DEBUG Processing 177/209 atomic regions from SNP 52821 to 53421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,246 DEBUG Processing 60/858 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,303 DEBUG Segmenting atomic regions: 2025-01-31 09:40:52,343 DEBUG Processing 19/1000 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,367 DEBUG Processing 79/834 atomic regions from SNP 23427 to 24027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,409 DEBUG Processing 178/209 atomic regions from SNP 53121 to 53721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,445 DEBUG Processing 1/1109 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:52,459 DEBUG Processing 61/858 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,579 DEBUG Processing 80/834 atomic regions from SNP 23727 to 24327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,582 DEBUG Processing 20/1000 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,623 DEBUG Processing 179/209 atomic regions from SNP 53421 to 54021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,625 DEBUG Segmenting atomic regions: 2025-01-31 09:40:52,683 DEBUG Processing 62/858 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,725 DEBUG Processing 1/456 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:52,793 DEBUG Processing 81/834 atomic regions from SNP 24027 to 24627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:52,819 DEBUG Processing 21/1000 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:52,835 DEBUG Processing 180/209 atomic regions from SNP 53721 to 54321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:52,897 DEBUG Processing 63/858 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:52,935 DEBUG Processing 2/456 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:53,008 DEBUG Processing 82/834 atomic regions from SNP 24327 to 24927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,046 DEBUG Processing 181/209 atomic regions from SNP 54021 to 54621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,057 DEBUG Processing 22/1000 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,109 DEBUG Processing 64/858 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,140 DEBUG Processing 3/456 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:53,185 DEBUG Processing 2/1109 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:53,225 DEBUG Processing 83/834 atomic regions from SNP 24627 to 25227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,257 DEBUG Processing 182/209 atomic regions from SNP 54321 to 54921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,298 DEBUG Processing 23/1000 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,323 DEBUG Processing 65/858 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,348 DEBUG Processing 4/456 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:53,434 DEBUG Processing 3/1109 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:53,444 DEBUG Processing 84/834 atomic regions from SNP 24927 to 25527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,469 DEBUG Processing 183/209 atomic regions from SNP 54621 to 55221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,533 DEBUG Processing 24/1000 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,536 DEBUG Processing 66/858 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,551 DEBUG Processing 5/456 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:53,659 DEBUG Processing 85/834 atomic regions from SNP 25227 to 25827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,686 DEBUG Processing 184/209 atomic regions from SNP 54921 to 55521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,689 DEBUG Processing 4/1109 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:53,752 DEBUG Processing 67/858 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:53,757 DEBUG Processing 6/456 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:53,772 DEBUG Processing 25/1000 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:53,870 DEBUG Processing 86/834 atomic regions from SNP 25527 to 26127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:53,899 DEBUG Processing 185/209 atomic regions from SNP 55221 to 55821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:53,942 DEBUG Processing 5/1109 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:53,962 DEBUG Processing 7/456 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:53,965 DEBUG Processing 68/858 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,010 DEBUG Processing 26/1000 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,082 DEBUG Processing 87/834 atomic regions from SNP 25827 to 26427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,111 DEBUG Processing 186/209 atomic regions from SNP 55521 to 56121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,168 DEBUG Processing 8/456 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:54,176 DEBUG Processing 69/858 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,192 DEBUG Processing 6/1109 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,250 DEBUG Processing 27/1000 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,296 DEBUG Processing 88/834 atomic regions from SNP 26127 to 26727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,322 DEBUG Processing 187/209 atomic regions from SNP 55821 to 56421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,390 DEBUG Processing 70/858 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,394 DEBUG Processing 9/456 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:54,441 DEBUG Processing 7/1109 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,494 DEBUG Processing 28/1000 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,516 DEBUG Processing 89/834 atomic regions from SNP 26427 to 27027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,534 DEBUG Processing 188/209 atomic regions from SNP 56121 to 56721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,599 DEBUG Processing 71/858 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,621 DEBUG Processing 10/456 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:54,689 DEBUG Processing 8/1109 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,732 DEBUG Processing 90/834 atomic regions from SNP 26727 to 27327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,733 DEBUG Processing 29/1000 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:54,745 DEBUG Processing 189/209 atomic regions from SNP 56421 to 57021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,809 DEBUG Processing 72/858 atomic regions from SNP 21371 to 21971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:54,826 DEBUG Processing 11/456 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:54,935 DEBUG Processing 9/1109 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:54,947 DEBUG Processing 91/834 atomic regions from SNP 27027 to 27627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:54,957 DEBUG Processing 190/209 atomic regions from SNP 56721 to 57321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:54,971 DEBUG Processing 30/1000 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,018 DEBUG Processing 73/858 atomic regions from SNP 21671 to 22271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,030 DEBUG Processing 12/456 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:55,160 DEBUG Processing 92/834 atomic regions from SNP 27327 to 27927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,169 DEBUG Processing 191/209 atomic regions from SNP 57021 to 57621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,185 DEBUG Processing 10/1109 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:55,209 DEBUG Processing 31/1000 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,231 DEBUG Processing 74/858 atomic regions from SNP 21971 to 22571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,237 DEBUG Processing 13/456 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:55,372 DEBUG Processing 93/834 atomic regions from SNP 27627 to 28227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,381 DEBUG Processing 192/209 atomic regions from SNP 57321 to 57921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,437 DEBUG Processing 11/1109 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:55,447 DEBUG Processing 75/858 atomic regions from SNP 22271 to 22871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,448 DEBUG Processing 14/456 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:55,449 DEBUG Processing 32/1000 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,582 DEBUG Processing 94/834 atomic regions from SNP 27927 to 28527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,590 DEBUG Processing 193/209 atomic regions from SNP 57621 to 58221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,657 DEBUG Processing 15/456 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:55,660 DEBUG Processing 76/858 atomic regions from SNP 22571 to 23171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,687 DEBUG Processing 12/1109 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:55,688 DEBUG Processing 33/1000 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,793 DEBUG Processing 95/834 atomic regions from SNP 28227 to 28827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:55,798 DEBUG Processing 194/209 atomic regions from SNP 57921 to 58521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:55,866 DEBUG Processing 16/456 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:55,873 DEBUG Processing 77/858 atomic regions from SNP 22871 to 23471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:55,929 DEBUG Processing 34/1000 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:55,938 DEBUG Processing 13/1109 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,007 DEBUG Processing 96/834 atomic regions from SNP 28527 to 29127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,008 DEBUG Processing 195/209 atomic regions from SNP 58221 to 58821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,076 DEBUG Processing 17/456 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:56,087 DEBUG Processing 78/858 atomic regions from SNP 23171 to 23771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,164 DEBUG Processing 35/1000 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,188 DEBUG Processing 14/1109 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,221 DEBUG Processing 196/209 atomic regions from SNP 58521 to 59121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,224 DEBUG Processing 97/834 atomic regions from SNP 28827 to 29427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,282 DEBUG Processing 18/456 atomic regions from SNP 5117 to 5717 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:56,296 DEBUG Processing 79/858 atomic regions from SNP 23471 to 24071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,400 DEBUG Processing 36/1000 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,434 DEBUG Processing 197/209 atomic regions from SNP 58821 to 59421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,438 DEBUG Processing 98/834 atomic regions from SNP 29127 to 29727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,439 DEBUG Processing 15/1109 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,490 DEBUG Processing 19/456 atomic regions from SNP 5417 to 6017 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:56,509 DEBUG Processing 80/858 atomic regions from SNP 23771 to 24371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,634 DEBUG Processing 37/1000 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,646 DEBUG Processing 198/209 atomic regions from SNP 59121 to 59721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,652 DEBUG Processing 99/834 atomic regions from SNP 29427 to 30027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,688 DEBUG Processing 16/1109 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:56,698 DEBUG Processing 20/456 atomic regions from SNP 5717 to 6317 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:56,718 DEBUG Processing 81/858 atomic regions from SNP 24071 to 24671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,857 DEBUG Processing 199/209 atomic regions from SNP 59421 to 60021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:56,867 DEBUG Processing 100/834 atomic regions from SNP 29727 to 30327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:56,871 DEBUG Processing 38/1000 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:56,904 DEBUG Processing 21/456 atomic regions from SNP 6017 to 6617 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:56,929 DEBUG Processing 82/858 atomic regions from SNP 24371 to 24971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:56,937 DEBUG Processing 17/1109 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,067 DEBUG Processing 200/209 atomic regions from SNP 59721 to 60321 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,081 DEBUG Processing 101/834 atomic regions from SNP 30027 to 30627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,108 DEBUG Processing 39/1000 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,112 DEBUG Processing 22/456 atomic regions from SNP 6317 to 6917 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:57,140 DEBUG Processing 83/858 atomic regions from SNP 24671 to 25271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,185 DEBUG Processing 18/1109 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,284 DEBUG Processing 201/209 atomic regions from SNP 60021 to 60621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,296 DEBUG Processing 102/834 atomic regions from SNP 30327 to 30927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,316 DEBUG Processing 23/456 atomic regions from SNP 6617 to 7217 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:57,344 DEBUG Processing 40/1000 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,354 DEBUG Processing 84/858 atomic regions from SNP 24971 to 25571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,432 DEBUG Processing 19/1109 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,512 DEBUG Processing 202/209 atomic regions from SNP 60321 to 60921 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,522 DEBUG Processing 24/456 atomic regions from SNP 6917 to 7517 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:57,533 DEBUG Processing 103/834 atomic regions from SNP 30627 to 31227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,567 DEBUG Processing 85/858 atomic regions from SNP 25271 to 25871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,578 DEBUG Processing 41/1000 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,681 DEBUG Processing 20/1109 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,730 DEBUG Processing 203/209 atomic regions from SNP 60621 to 61221 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,740 DEBUG Processing 25/456 atomic regions from SNP 7217 to 7817 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:57,760 DEBUG Processing 104/834 atomic regions from SNP 30927 to 31527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,783 DEBUG Processing 86/858 atomic regions from SNP 25571 to 26171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:57,822 DEBUG Processing 42/1000 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:57,925 DEBUG Processing 21/1109 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:57,941 DEBUG Processing 204/209 atomic regions from SNP 60921 to 61521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:57,951 DEBUG Processing 26/456 atomic regions from SNP 7517 to 8117 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:57,977 DEBUG Processing 105/834 atomic regions from SNP 31227 to 31827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:57,999 DEBUG Processing 87/858 atomic regions from SNP 25871 to 26471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,058 DEBUG Processing 43/1000 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,156 DEBUG Processing 27/456 atomic regions from SNP 7817 to 8417 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:58,162 DEBUG Processing 205/209 atomic regions from SNP 61221 to 61821 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,167 DEBUG Processing 22/1109 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,193 DEBUG Processing 106/834 atomic regions from SNP 31527 to 32127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,209 DEBUG Processing 88/858 atomic regions from SNP 26171 to 26771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,292 DEBUG Processing 44/1000 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,359 DEBUG Processing 28/456 atomic regions from SNP 8117 to 8717 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:58,403 DEBUG Processing 206/209 atomic regions from SNP 61521 to 62121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,404 DEBUG Processing 107/834 atomic regions from SNP 31827 to 32427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,417 DEBUG Processing 23/1109 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,426 DEBUG Processing 89/858 atomic regions from SNP 26471 to 27071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,523 DEBUG Processing 45/1000 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,560 DEBUG Processing 29/456 atomic regions from SNP 8417 to 9017 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:58,635 DEBUG Processing 207/209 atomic regions from SNP 61821 to 62421 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,636 DEBUG Processing 108/834 atomic regions from SNP 32127 to 32727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,640 DEBUG Processing 90/858 atomic regions from SNP 26771 to 27371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,665 DEBUG Processing 24/1109 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,756 DEBUG Processing 46/1000 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:58,764 DEBUG Processing 30/456 atomic regions from SNP 8717 to 9317 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:58,846 DEBUG Processing 208/209 atomic regions from SNP 62121 to 62721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:58,854 DEBUG Processing 91/858 atomic regions from SNP 27071 to 27671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:58,879 DEBUG Processing 109/834 atomic regions from SNP 32427 to 33027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:58,913 DEBUG Processing 25/1109 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:58,968 DEBUG Processing 31/456 atomic regions from SNP 9017 to 9617 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:58,989 DEBUG Processing 47/1000 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,056 DEBUG Processing 209/209 atomic regions from SNP 62421 to 63021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:40:59,065 DEBUG Processing 92/858 atomic regions from SNP 27371 to 27971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,114 DEBUG Processing 110/834 atomic regions from SNP 32727 to 33327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,157 DEBUG Processing 26/1109 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,172 DEBUG Unique SNPs positions in subchromosome 1: 63022 2025-01-31 09:40:59,173 DEBUG Processing 32/456 atomic regions from SNP 9317 to 9917 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:59,227 DEBUG Processing 48/1000 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,277 DEBUG Processing 93/858 atomic regions from SNP 27671 to 28271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,280 DEBUG Subchromosome time: 53.408268486964516, subchromosome SNPs: 63022 2025-01-31 09:40:59,326 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:59,359 DEBUG Processing 111/834 atomic regions from SNP 33027 to 33627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,375 DEBUG Processing 33/456 atomic regions from SNP 9617 to 10217 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:59,400 DEBUG Processing 27/1109 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,461 DEBUG Processing 49/1000 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,483 DEBUG Processing 94/858 atomic regions from SNP 27971 to 28571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,579 DEBUG Processing 34/456 atomic regions from SNP 9917 to 10517 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:59,597 DEBUG Processing 112/834 atomic regions from SNP 33327 to 33927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,644 DEBUG Processing 28/1109 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,691 DEBUG Processing 95/858 atomic regions from SNP 28271 to 28871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,697 DEBUG Processing 50/1000 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,782 DEBUG Processing 35/456 atomic regions from SNP 10217 to 10817 for chrX (subchromosome 4 of 5). 2025-01-31 09:40:59,811 DEBUG Processing 113/834 atomic regions from SNP 33627 to 34227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:40:59,891 DEBUG Processing 29/1109 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:40:59,900 DEBUG Processing 96/858 atomic regions from SNP 28571 to 29171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:40:59,931 DEBUG Processing 51/1000 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:40:59,986 DEBUG Processing 36/456 atomic regions from SNP 10517 to 11117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:00,018 DEBUG Processing 114/834 atomic regions from SNP 33927 to 34527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,109 DEBUG Processing 97/858 atomic regions from SNP 28871 to 29471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,139 DEBUG Processing 30/1109 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,170 DEBUG Processing 52/1000 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,191 DEBUG Processing 37/456 atomic regions from SNP 10817 to 11417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:00,245 DEBUG Processing 115/834 atomic regions from SNP 34227 to 34827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,320 DEBUG Processing 98/858 atomic regions from SNP 29171 to 29771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,385 DEBUG Processing 31/1109 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,397 DEBUG Processing 38/456 atomic regions from SNP 11117 to 11717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:00,405 DEBUG Processing 53/1000 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,474 DEBUG Processing 116/834 atomic regions from SNP 34527 to 35127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,529 DEBUG Processing 99/858 atomic regions from SNP 29471 to 30071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,604 DEBUG Processing 39/456 atomic regions from SNP 11417 to 12017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:00,630 DEBUG Processing 32/1109 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,641 DEBUG Processing 54/1000 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,686 DEBUG Processing 117/834 atomic regions from SNP 34827 to 35427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,745 DEBUG Processing 100/858 atomic regions from SNP 29771 to 30371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:00,808 DEBUG Processing 40/456 atomic regions from SNP 11717 to 12317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:00,873 DEBUG Processing 55/1000 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:00,874 DEBUG Processing 33/1109 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:00,897 DEBUG Processing 118/834 atomic regions from SNP 35127 to 35727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:00,954 DEBUG Processing 101/858 atomic regions from SNP 30071 to 30671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,011 DEBUG Processing 41/456 atomic regions from SNP 12017 to 12617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:01,106 DEBUG Processing 119/834 atomic regions from SNP 35427 to 36027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,108 DEBUG Processing 56/1000 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,117 DEBUG Processing 34/1109 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,164 DEBUG Processing 102/858 atomic regions from SNP 30371 to 30971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,216 DEBUG Processing 42/456 atomic regions from SNP 12317 to 12917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:01,315 DEBUG Processing 120/834 atomic regions from SNP 35727 to 36327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,342 DEBUG Processing 57/1000 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,363 DEBUG Processing 35/1109 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,376 DEBUG Processing 103/858 atomic regions from SNP 30671 to 31271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,422 DEBUG Processing 43/456 atomic regions from SNP 12617 to 13217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:01,522 DEBUG Processing 121/834 atomic regions from SNP 36027 to 36627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,576 DEBUG Processing 58/1000 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,585 DEBUG Processing 104/858 atomic regions from SNP 30971 to 31571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,609 DEBUG Processing 36/1109 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,626 DEBUG Processing 44/456 atomic regions from SNP 12917 to 13517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:01,729 DEBUG Processing 122/834 atomic regions from SNP 36327 to 36927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:01,795 DEBUG Processing 105/858 atomic regions from SNP 31271 to 31871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:01,811 DEBUG Processing 59/1000 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:01,832 DEBUG Processing 45/456 atomic regions from SNP 13217 to 13817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:01,855 DEBUG Processing 37/1109 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:01,937 DEBUG Processing 123/834 atomic regions from SNP 36627 to 37227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,003 DEBUG Processing 106/858 atomic regions from SNP 31571 to 32171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,036 DEBUG Processing 46/456 atomic regions from SNP 13517 to 14117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:02,045 DEBUG Processing 60/1000 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,095 DEBUG Processing 38/1109 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,145 DEBUG Processing 124/834 atomic regions from SNP 36927 to 37527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,211 DEBUG Processing 107/858 atomic regions from SNP 31871 to 32471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,241 DEBUG Processing 47/456 atomic regions from SNP 13817 to 14417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:02,277 DEBUG Processing 61/1000 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,339 DEBUG Processing 39/1109 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,357 DEBUG Processing 125/834 atomic regions from SNP 37227 to 37827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,424 DEBUG Processing 108/858 atomic regions from SNP 32171 to 32771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,447 DEBUG Processing 48/456 atomic regions from SNP 14117 to 14717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:02,515 DEBUG Processing 62/1000 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,570 DEBUG Processing 126/834 atomic regions from SNP 37527 to 38127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,582 DEBUG Processing 40/1109 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,634 DEBUG Processing 109/858 atomic regions from SNP 32471 to 33071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,652 DEBUG Processing 49/456 atomic regions from SNP 14417 to 15017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:02,749 DEBUG Processing 63/1000 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,780 DEBUG Processing 127/834 atomic regions from SNP 37827 to 38427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:02,830 DEBUG Processing 41/1109 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:02,844 DEBUG Processing 110/858 atomic regions from SNP 32771 to 33371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:02,858 DEBUG Processing 50/456 atomic regions from SNP 14717 to 15317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:02,981 DEBUG Processing 64/1000 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:02,989 DEBUG Processing 128/834 atomic regions from SNP 38127 to 38727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,055 DEBUG Processing 111/858 atomic regions from SNP 33071 to 33671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,060 DEBUG Processing 51/456 atomic regions from SNP 15017 to 15617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:03,077 DEBUG Processing 42/1109 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,201 DEBUG Processing 129/834 atomic regions from SNP 38427 to 39027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,214 DEBUG Processing 65/1000 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:03,265 DEBUG Processing 112/858 atomic regions from SNP 33371 to 33971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,265 DEBUG Processing 52/456 atomic regions from SNP 15317 to 15917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:03,321 DEBUG Processing 43/1109 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,433 DEBUG Processing 130/834 atomic regions from SNP 38727 to 39327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,452 DEBUG Processing 66/1000 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:03,470 DEBUG Processing 53/456 atomic regions from SNP 15617 to 16217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:03,477 DEBUG Processing 113/858 atomic regions from SNP 33671 to 34271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,561 DEBUG Processing 44/1109 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,647 DEBUG Processing 131/834 atomic regions from SNP 39027 to 39627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,678 DEBUG Processing 54/456 atomic regions from SNP 15917 to 16517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:03,686 DEBUG Processing 114/858 atomic regions from SNP 33971 to 34571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,689 DEBUG Processing 67/1000 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:03,801 DEBUG Processing 45/1109 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:03,860 DEBUG Processing 132/834 atomic regions from SNP 39327 to 39927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:03,887 DEBUG Processing 55/456 atomic regions from SNP 16217 to 16817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:03,895 DEBUG Processing 115/858 atomic regions from SNP 34271 to 34871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:03,927 DEBUG Processing 68/1000 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,042 DEBUG Processing 46/1109 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:04,071 DEBUG Processing 133/834 atomic regions from SNP 39627 to 40227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,094 DEBUG Processing 56/456 atomic regions from SNP 16517 to 17117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:04,102 DEBUG Processing 116/858 atomic regions from SNP 34571 to 35171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,161 DEBUG Processing 69/1000 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,284 DEBUG Processing 134/834 atomic regions from SNP 39927 to 40527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,287 DEBUG Processing 47/1109 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:04,301 DEBUG Processing 57/456 atomic regions from SNP 16817 to 17417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:04,312 DEBUG Processing 117/858 atomic regions from SNP 34871 to 35471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,402 DEBUG Processing 70/1000 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,497 DEBUG Processing 135/834 atomic regions from SNP 40227 to 40827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,506 DEBUG Processing 58/456 atomic regions from SNP 17117 to 17717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:04,522 DEBUG Processing 118/858 atomic regions from SNP 35171 to 35771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,535 DEBUG Processing 48/1109 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:04,636 DEBUG Processing 71/1000 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,715 DEBUG Processing 136/834 atomic regions from SNP 40527 to 41127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,717 DEBUG Processing 59/456 atomic regions from SNP 17417 to 18017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:04,732 DEBUG Processing 119/858 atomic regions from SNP 35471 to 36071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:04,780 DEBUG Processing 49/1109 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:04,875 DEBUG Processing 72/1000 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:04,930 DEBUG Processing 60/456 atomic regions from SNP 17717 to 18317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:04,935 DEBUG Processing 137/834 atomic regions from SNP 40827 to 41427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:04,942 DEBUG Processing 120/858 atomic regions from SNP 35771 to 36371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,022 DEBUG Processing 50/1109 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,112 DEBUG Processing 73/1000 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,146 DEBUG Processing 61/456 atomic regions from SNP 18017 to 18617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:05,153 DEBUG Processing 121/858 atomic regions from SNP 36071 to 36671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,156 DEBUG Processing 138/834 atomic regions from SNP 41127 to 41727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,264 DEBUG Processing 51/1109 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,357 DEBUG Processing 74/1000 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,362 DEBUG Processing 62/456 atomic regions from SNP 18317 to 18917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:05,365 DEBUG Processing 122/858 atomic regions from SNP 36371 to 36971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,378 DEBUG Processing 139/834 atomic regions from SNP 41427 to 42027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,507 DEBUG Processing 52/1109 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,575 DEBUG Processing 63/456 atomic regions from SNP 18617 to 19217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:05,576 DEBUG Processing 123/858 atomic regions from SNP 36671 to 37271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,599 DEBUG Processing 140/834 atomic regions from SNP 41727 to 42327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,603 DEBUG Processing 75/1000 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,750 DEBUG Processing 53/1109 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:05,788 DEBUG Processing 124/858 atomic regions from SNP 36971 to 37571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:05,789 DEBUG Processing 64/456 atomic regions from SNP 18917 to 19517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:05,820 DEBUG Processing 141/834 atomic regions from SNP 42027 to 42627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:05,848 DEBUG Processing 76/1000 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:05,996 DEBUG Processing 54/1109 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:06,002 DEBUG Processing 65/456 atomic regions from SNP 19217 to 19817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:06,003 DEBUG Processing 125/858 atomic regions from SNP 37271 to 37871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,040 DEBUG Processing 142/834 atomic regions from SNP 42327 to 42927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,085 DEBUG Processing 77/1000 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,216 DEBUG Processing 66/456 atomic regions from SNP 19517 to 20117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:06,219 DEBUG Processing 126/858 atomic regions from SNP 37571 to 38171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,247 DEBUG Processing 55/1109 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:06,260 DEBUG Processing 143/834 atomic regions from SNP 42627 to 43227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,324 DEBUG Processing 78/1000 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,432 DEBUG Processing 67/456 atomic regions from SNP 19817 to 20417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:06,436 DEBUG Processing 127/858 atomic regions from SNP 37871 to 38471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,496 DEBUG Processing 144/834 atomic regions from SNP 42927 to 43527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,499 DEBUG Processing 56/1109 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:06,563 DEBUG Processing 79/1000 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,641 DEBUG Processing 68/456 atomic regions from SNP 20117 to 20717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:06,646 DEBUG Processing 128/858 atomic regions from SNP 38171 to 38771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,728 DEBUG Processing 145/834 atomic regions from SNP 43227 to 43827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,749 DEBUG Processing 57/1109 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:06,802 DEBUG Processing 80/1000 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:06,855 DEBUG Processing 129/858 atomic regions from SNP 38471 to 39071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:06,861 DEBUG Processing 69/456 atomic regions from SNP 20417 to 21017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:06,973 DEBUG Processing 146/834 atomic regions from SNP 43527 to 44127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:06,992 DEBUG Processing 58/1109 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,042 DEBUG Processing 81/1000 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,062 DEBUG Processing 130/858 atomic regions from SNP 38771 to 39371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,086 DEBUG Processing 70/456 atomic regions from SNP 20717 to 21317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:07,224 DEBUG Processing 147/834 atomic regions from SNP 43827 to 44427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,240 DEBUG Processing 59/1109 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,277 DEBUG Processing 131/858 atomic regions from SNP 39071 to 39671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,285 DEBUG Processing 82/1000 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,303 DEBUG Processing 71/456 atomic regions from SNP 21017 to 21617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:07,476 DEBUG Processing 148/834 atomic regions from SNP 44127 to 44727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,486 DEBUG Processing 60/1109 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,488 DEBUG Processing 132/858 atomic regions from SNP 39371 to 39971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,513 DEBUG Processing 72/456 atomic regions from SNP 21317 to 21917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:07,525 DEBUG Processing 83/1000 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,700 DEBUG Processing 133/858 atomic regions from SNP 39671 to 40271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,712 DEBUG Processing 149/834 atomic regions from SNP 44427 to 45027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,728 DEBUG Processing 73/456 atomic regions from SNP 21617 to 22217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:07,734 DEBUG Processing 61/1109 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:07,770 DEBUG Processing 84/1000 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:07,913 DEBUG Processing 134/858 atomic regions from SNP 39971 to 40571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:07,930 DEBUG Processing 150/834 atomic regions from SNP 44727 to 45327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:07,939 DEBUG Processing 74/456 atomic regions from SNP 21917 to 22517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:07,982 DEBUG Processing 62/1109 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,010 DEBUG Processing 85/1000 atomic regions from SNP 25284 to 25884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,123 DEBUG Processing 135/858 atomic regions from SNP 40271 to 40871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,143 DEBUG Processing 151/834 atomic regions from SNP 45027 to 45627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,145 DEBUG Processing 75/456 atomic regions from SNP 22217 to 22817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:08,226 DEBUG Processing 63/1109 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,261 DEBUG Processing 86/1000 atomic regions from SNP 25584 to 26184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,343 DEBUG Processing 136/858 atomic regions from SNP 40571 to 41171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,352 DEBUG Processing 76/456 atomic regions from SNP 22517 to 23117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:08,357 DEBUG Processing 152/834 atomic regions from SNP 45327 to 45927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,468 DEBUG Processing 64/1109 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,522 DEBUG Processing 87/1000 atomic regions from SNP 25884 to 26484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,556 DEBUG Processing 137/858 atomic regions from SNP 40871 to 41471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,562 DEBUG Processing 77/456 atomic regions from SNP 22817 to 23417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:08,572 DEBUG Processing 153/834 atomic regions from SNP 45627 to 46227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,710 DEBUG Processing 65/1109 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,759 DEBUG Processing 88/1000 atomic regions from SNP 26184 to 26784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:08,769 DEBUG Processing 138/858 atomic regions from SNP 41171 to 41771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,773 DEBUG Processing 78/456 atomic regions from SNP 23117 to 23717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:08,788 DEBUG Processing 154/834 atomic regions from SNP 45927 to 46527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:08,954 DEBUG Processing 66/1109 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:08,984 DEBUG Processing 139/858 atomic regions from SNP 41471 to 42071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:08,984 DEBUG Processing 79/456 atomic regions from SNP 23417 to 24017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:08,997 DEBUG Processing 89/1000 atomic regions from SNP 26484 to 27084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,004 DEBUG Processing 155/834 atomic regions from SNP 46227 to 46827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,196 DEBUG Processing 80/456 atomic regions from SNP 23717 to 24317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:09,199 DEBUG Processing 140/858 atomic regions from SNP 41771 to 42371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,202 DEBUG Processing 67/1109 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,222 DEBUG Processing 156/834 atomic regions from SNP 46527 to 47127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,238 DEBUG Processing 90/1000 atomic regions from SNP 26784 to 27384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,408 DEBUG Processing 81/456 atomic regions from SNP 24017 to 24617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:09,415 DEBUG Processing 141/858 atomic regions from SNP 42071 to 42671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,441 DEBUG Processing 157/834 atomic regions from SNP 46827 to 47427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,454 DEBUG Processing 68/1109 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,485 DEBUG Processing 91/1000 atomic regions from SNP 27084 to 27684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,628 DEBUG Processing 142/858 atomic regions from SNP 42371 to 42971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,642 DEBUG Processing 82/456 atomic regions from SNP 24317 to 24917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:09,660 DEBUG Processing 158/834 atomic regions from SNP 47127 to 47727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,701 DEBUG Processing 69/1109 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,719 DEBUG Processing 92/1000 atomic regions from SNP 27384 to 27984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:09,838 DEBUG Processing 143/858 atomic regions from SNP 42671 to 43271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:09,862 DEBUG Processing 83/456 atomic regions from SNP 24617 to 25217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:09,879 DEBUG Processing 159/834 atomic regions from SNP 47427 to 48027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:09,944 DEBUG Processing 70/1109 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:09,955 DEBUG Processing 93/1000 atomic regions from SNP 27684 to 28284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,045 DEBUG Processing 144/858 atomic regions from SNP 42971 to 43571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,066 DEBUG Processing 84/456 atomic regions from SNP 24917 to 25517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:10,093 DEBUG Processing 160/834 atomic regions from SNP 47727 to 48327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,188 DEBUG Processing 71/1109 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,191 DEBUG Processing 94/1000 atomic regions from SNP 27984 to 28584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,253 DEBUG Processing 145/858 atomic regions from SNP 43271 to 43871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,268 DEBUG Processing 85/456 atomic regions from SNP 25217 to 25817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:10,314 DEBUG Processing 161/834 atomic regions from SNP 48027 to 48627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,430 DEBUG Processing 95/1000 atomic regions from SNP 28284 to 28884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,437 DEBUG Processing 72/1109 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,463 DEBUG Processing 146/858 atomic regions from SNP 43571 to 44171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,473 DEBUG Processing 86/456 atomic regions from SNP 25517 to 26117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:10,535 DEBUG Processing 162/834 atomic regions from SNP 48327 to 48927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,669 DEBUG Processing 96/1000 atomic regions from SNP 28584 to 29184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,677 DEBUG Processing 87/456 atomic regions from SNP 25817 to 26417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:10,685 DEBUG Processing 73/1109 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,691 DEBUG Processing 147/858 atomic regions from SNP 43871 to 44471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,769 DEBUG Processing 163/834 atomic regions from SNP 48627 to 49227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:10,886 DEBUG Processing 88/456 atomic regions from SNP 26117 to 26717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:10,905 DEBUG Processing 148/858 atomic regions from SNP 44171 to 44771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:10,909 DEBUG Processing 97/1000 atomic regions from SNP 28884 to 29484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:10,936 DEBUG Processing 74/1109 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:10,989 DEBUG Processing 164/834 atomic regions from SNP 48927 to 49527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,091 DEBUG Processing 89/456 atomic regions from SNP 26417 to 27017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:11,121 DEBUG Processing 149/858 atomic regions from SNP 44471 to 45071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,148 DEBUG Processing 98/1000 atomic regions from SNP 29184 to 29784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,180 DEBUG Processing 75/1109 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,201 DEBUG Processing 165/834 atomic regions from SNP 49227 to 49827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,298 DEBUG Processing 90/456 atomic regions from SNP 26717 to 27317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:11,343 DEBUG Processing 150/858 atomic regions from SNP 44771 to 45371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,384 DEBUG Processing 99/1000 atomic regions from SNP 29484 to 30084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,415 DEBUG Processing 166/834 atomic regions from SNP 49527 to 50127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,423 DEBUG Processing 76/1109 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,501 DEBUG Processing 91/456 atomic regions from SNP 27017 to 27617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:11,552 DEBUG Processing 151/858 atomic regions from SNP 45071 to 45671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,621 DEBUG Processing 100/1000 atomic regions from SNP 29784 to 30384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,631 DEBUG Processing 167/834 atomic regions from SNP 49827 to 50427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,666 DEBUG Processing 77/1109 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,704 DEBUG Processing 92/456 atomic regions from SNP 27317 to 27917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:11,760 DEBUG Processing 152/858 atomic regions from SNP 45371 to 45971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:11,855 DEBUG Processing 168/834 atomic regions from SNP 50127 to 50727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:11,860 DEBUG Processing 101/1000 atomic regions from SNP 30084 to 30684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:11,910 DEBUG Processing 93/456 atomic regions from SNP 27617 to 28217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:11,910 DEBUG Processing 78/1109 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:11,969 DEBUG Processing 153/858 atomic regions from SNP 45671 to 46271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,090 DEBUG Processing 169/834 atomic regions from SNP 50427 to 51027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,094 DEBUG Processing 102/1000 atomic regions from SNP 30384 to 30984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,123 DEBUG Processing 94/456 atomic regions from SNP 27917 to 28517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:12,156 DEBUG Processing 79/1109 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,179 DEBUG Processing 154/858 atomic regions from SNP 45971 to 46571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,303 DEBUG Processing 170/834 atomic regions from SNP 50727 to 51327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,332 DEBUG Processing 103/1000 atomic regions from SNP 30684 to 31284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,334 DEBUG Processing 95/456 atomic regions from SNP 28217 to 28817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:12,389 DEBUG Processing 155/858 atomic regions from SNP 46271 to 46871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,402 DEBUG Processing 80/1109 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,522 DEBUG Processing 171/834 atomic regions from SNP 51027 to 51627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,545 DEBUG Processing 96/456 atomic regions from SNP 28517 to 29117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:12,573 DEBUG Processing 104/1000 atomic regions from SNP 30984 to 31584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,602 DEBUG Processing 156/858 atomic regions from SNP 46571 to 47171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,647 DEBUG Processing 81/1109 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,745 DEBUG Processing 172/834 atomic regions from SNP 51327 to 51927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,757 DEBUG Processing 97/456 atomic regions from SNP 28817 to 29417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:12,812 DEBUG Processing 157/858 atomic regions from SNP 46871 to 47471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:12,814 DEBUG Processing 105/1000 atomic regions from SNP 31284 to 31884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:12,890 DEBUG Processing 82/1109 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:12,958 DEBUG Processing 173/834 atomic regions from SNP 51627 to 52227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:12,965 DEBUG Processing 98/456 atomic regions from SNP 29117 to 29717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:13,020 DEBUG Processing 158/858 atomic regions from SNP 47171 to 47771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,053 DEBUG Processing 106/1000 atomic regions from SNP 31584 to 32184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,130 DEBUG Processing 83/1109 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,173 DEBUG Processing 174/834 atomic regions from SNP 51927 to 52527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,173 DEBUG Processing 99/456 atomic regions from SNP 29417 to 30017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:13,229 DEBUG Processing 159/858 atomic regions from SNP 47471 to 48071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,286 DEBUG Processing 107/1000 atomic regions from SNP 31884 to 32484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,377 DEBUG Processing 84/1109 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,383 DEBUG Processing 100/456 atomic regions from SNP 29717 to 30317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:13,389 DEBUG Processing 175/834 atomic regions from SNP 52227 to 52827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,444 DEBUG Processing 160/858 atomic regions from SNP 47771 to 48371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,519 DEBUG Processing 108/1000 atomic regions from SNP 32184 to 32784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,591 DEBUG Processing 101/456 atomic regions from SNP 30017 to 30617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:13,604 DEBUG Processing 176/834 atomic regions from SNP 52527 to 53127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,623 DEBUG Processing 85/1109 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,655 DEBUG Processing 161/858 atomic regions from SNP 48071 to 48671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,749 DEBUG Processing 109/1000 atomic regions from SNP 32484 to 33084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:13,799 DEBUG Processing 102/456 atomic regions from SNP 30317 to 30917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:13,819 DEBUG Processing 177/834 atomic regions from SNP 52827 to 53427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:13,866 DEBUG Processing 162/858 atomic regions from SNP 48371 to 48971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:13,869 DEBUG Processing 86/1109 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:13,984 DEBUG Processing 110/1000 atomic regions from SNP 32784 to 33384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,007 DEBUG Processing 103/456 atomic regions from SNP 30617 to 31217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,032 DEBUG Processing 178/834 atomic regions from SNP 53127 to 53727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,078 DEBUG Processing 163/858 atomic regions from SNP 48671 to 49271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,115 DEBUG Processing 87/1109 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,216 DEBUG Processing 104/456 atomic regions from SNP 30917 to 31517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,221 DEBUG Processing 111/1000 atomic regions from SNP 33084 to 33684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,246 DEBUG Processing 179/834 atomic regions from SNP 53427 to 54027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,290 DEBUG Processing 164/858 atomic regions from SNP 48971 to 49571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,361 DEBUG Processing 88/1109 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,426 DEBUG Processing 105/456 atomic regions from SNP 31217 to 31817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,461 DEBUG Processing 180/834 atomic regions from SNP 53727 to 54327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,462 DEBUG Processing 112/1000 atomic regions from SNP 33384 to 33984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,498 DEBUG Processing 165/858 atomic regions from SNP 49271 to 49871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,604 DEBUG Processing 89/1109 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,636 DEBUG Processing 106/456 atomic regions from SNP 31517 to 32117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,687 DEBUG Processing 181/834 atomic regions from SNP 54027 to 54627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,700 DEBUG Processing 113/1000 atomic regions from SNP 33684 to 34284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:14,706 DEBUG Processing 166/858 atomic regions from SNP 49571 to 50171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,844 DEBUG Processing 107/456 atomic regions from SNP 31817 to 32417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:14,848 DEBUG Processing 90/1109 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:14,913 DEBUG Processing 167/858 atomic regions from SNP 49871 to 50471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:14,920 DEBUG Processing 182/834 atomic regions from SNP 54327 to 54927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:14,936 DEBUG Processing 114/1000 atomic regions from SNP 33984 to 34584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,053 DEBUG Processing 108/456 atomic regions from SNP 32117 to 32717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,091 DEBUG Processing 91/1109 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,123 DEBUG Processing 168/858 atomic regions from SNP 50171 to 50771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,143 DEBUG Processing 183/834 atomic regions from SNP 54627 to 55227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,174 DEBUG Processing 115/1000 atomic regions from SNP 34284 to 34884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,259 DEBUG Processing 109/456 atomic regions from SNP 32417 to 33017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,330 DEBUG Processing 169/858 atomic regions from SNP 50471 to 51071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,336 DEBUG Processing 92/1109 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,356 DEBUG Processing 184/834 atomic regions from SNP 54927 to 55527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,411 DEBUG Processing 116/1000 atomic regions from SNP 34584 to 35184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,465 DEBUG Processing 110/456 atomic regions from SNP 32717 to 33317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,539 DEBUG Processing 170/858 atomic regions from SNP 50771 to 51371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,568 DEBUG Processing 185/834 atomic regions from SNP 55227 to 55827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,579 DEBUG Processing 93/1109 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,648 DEBUG Processing 117/1000 atomic regions from SNP 34884 to 35484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,671 DEBUG Processing 111/456 atomic regions from SNP 33017 to 33617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,748 DEBUG Processing 171/858 atomic regions from SNP 51071 to 51671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,779 DEBUG Processing 186/834 atomic regions from SNP 55527 to 56127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:15,821 DEBUG Processing 94/1109 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:15,878 DEBUG Processing 112/456 atomic regions from SNP 33317 to 33917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:15,885 DEBUG Processing 118/1000 atomic regions from SNP 35184 to 35784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:15,957 DEBUG Processing 172/858 atomic regions from SNP 51371 to 51971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:15,988 DEBUG Processing 187/834 atomic regions from SNP 55827 to 56427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,064 DEBUG Processing 95/1109 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,085 DEBUG Processing 113/456 atomic regions from SNP 33617 to 34217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,121 DEBUG Processing 119/1000 atomic regions from SNP 35484 to 36084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,166 DEBUG Processing 173/858 atomic regions from SNP 51671 to 52271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,195 DEBUG Processing 188/834 atomic regions from SNP 56127 to 56727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,290 DEBUG Processing 114/456 atomic regions from SNP 33917 to 34517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,308 DEBUG Processing 96/1109 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,357 DEBUG Processing 120/1000 atomic regions from SNP 35784 to 36384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,376 DEBUG Processing 174/858 atomic regions from SNP 51971 to 52571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,409 DEBUG Processing 189/834 atomic regions from SNP 56427 to 57027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,492 DEBUG Processing 115/456 atomic regions from SNP 34217 to 34817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,556 DEBUG Processing 97/1109 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,591 DEBUG Processing 175/858 atomic regions from SNP 52271 to 52871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,600 DEBUG Processing 121/1000 atomic regions from SNP 36084 to 36684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,630 DEBUG Processing 190/834 atomic regions from SNP 56727 to 57327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,697 DEBUG Processing 116/456 atomic regions from SNP 34517 to 35117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:16,798 DEBUG Processing 98/1109 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:16,800 DEBUG Processing 176/858 atomic regions from SNP 52571 to 53171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:16,839 DEBUG Processing 122/1000 atomic regions from SNP 36384 to 36984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:16,847 DEBUG Processing 191/834 atomic regions from SNP 57027 to 57627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:16,901 DEBUG Processing 117/456 atomic regions from SNP 34817 to 35417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,008 DEBUG Processing 177/858 atomic regions from SNP 52871 to 53471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,039 DEBUG Processing 99/1109 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,062 DEBUG Processing 192/834 atomic regions from SNP 57327 to 57927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,075 DEBUG Processing 123/1000 atomic regions from SNP 36684 to 37284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,106 DEBUG Processing 118/456 atomic regions from SNP 35117 to 35717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,216 DEBUG Processing 178/858 atomic regions from SNP 53171 to 53771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,275 DEBUG Processing 193/834 atomic regions from SNP 57627 to 58227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,281 DEBUG Processing 100/1109 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,310 DEBUG Processing 124/1000 atomic regions from SNP 36984 to 37584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,313 DEBUG Processing 119/456 atomic regions from SNP 35417 to 36017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,422 DEBUG Processing 179/858 atomic regions from SNP 53471 to 54071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,485 DEBUG Processing 194/834 atomic regions from SNP 57927 to 58527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,519 DEBUG Processing 120/456 atomic regions from SNP 35717 to 36317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,524 DEBUG Processing 101/1109 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,559 DEBUG Processing 125/1000 atomic regions from SNP 37284 to 37884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,627 DEBUG Processing 180/858 atomic regions from SNP 53771 to 54371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,696 DEBUG Processing 195/834 atomic regions from SNP 58227 to 58827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,722 DEBUG Processing 121/456 atomic regions from SNP 36017 to 36617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:17,768 DEBUG Processing 102/1109 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:17,819 DEBUG Processing 126/1000 atomic regions from SNP 37584 to 38184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:17,835 DEBUG Processing 181/858 atomic regions from SNP 54071 to 54671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:17,905 DEBUG Processing 196/834 atomic regions from SNP 58527 to 59127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:17,927 DEBUG Processing 122/456 atomic regions from SNP 36317 to 36917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,023 DEBUG Processing 103/1109 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,045 DEBUG Processing 182/858 atomic regions from SNP 54371 to 54971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,082 DEBUG Processing 127/1000 atomic regions from SNP 37884 to 38484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,117 DEBUG Processing 197/834 atomic regions from SNP 58827 to 59427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,130 DEBUG Processing 123/456 atomic regions from SNP 36617 to 37217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,252 DEBUG Processing 183/858 atomic regions from SNP 54671 to 55271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,264 DEBUG Processing 104/1109 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,333 DEBUG Processing 198/834 atomic regions from SNP 59127 to 59727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,337 DEBUG Processing 124/456 atomic regions from SNP 36917 to 37517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,344 DEBUG Processing 128/1000 atomic regions from SNP 38184 to 38784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,461 DEBUG Processing 184/858 atomic regions from SNP 54971 to 55571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,507 DEBUG Processing 105/1109 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,544 DEBUG Processing 125/456 atomic regions from SNP 37217 to 37817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,548 DEBUG Processing 199/834 atomic regions from SNP 59427 to 60027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,596 DEBUG Processing 129/1000 atomic regions from SNP 38484 to 39084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,668 DEBUG Processing 185/858 atomic regions from SNP 55271 to 55871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,748 DEBUG Processing 106/1109 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:18,750 DEBUG Processing 126/456 atomic regions from SNP 37517 to 38117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,760 DEBUG Processing 200/834 atomic regions from SNP 59727 to 60327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,842 DEBUG Processing 130/1000 atomic regions from SNP 38784 to 39384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:18,877 DEBUG Processing 186/858 atomic regions from SNP 55571 to 56171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:18,955 DEBUG Processing 127/456 atomic regions from SNP 37817 to 38417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:18,969 DEBUG Processing 201/834 atomic regions from SNP 60027 to 60627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:18,989 DEBUG Processing 107/1109 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,075 DEBUG Processing 131/1000 atomic regions from SNP 39084 to 39684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,084 DEBUG Processing 187/858 atomic regions from SNP 55871 to 56471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,161 DEBUG Processing 128/456 atomic regions from SNP 38117 to 38717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,179 DEBUG Processing 202/834 atomic regions from SNP 60327 to 60927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,228 DEBUG Processing 108/1109 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,290 DEBUG Processing 188/858 atomic regions from SNP 56171 to 56771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,321 DEBUG Processing 132/1000 atomic regions from SNP 39384 to 39984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,368 DEBUG Processing 129/456 atomic regions from SNP 38417 to 39017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,389 DEBUG Processing 203/834 atomic regions from SNP 60627 to 61227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,468 DEBUG Processing 109/1109 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,495 DEBUG Processing 189/858 atomic regions from SNP 56471 to 57071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,578 DEBUG Processing 130/456 atomic regions from SNP 38717 to 39317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,583 DEBUG Processing 133/1000 atomic regions from SNP 39684 to 40284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,604 DEBUG Processing 204/834 atomic regions from SNP 60927 to 61527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,700 DEBUG Processing 190/858 atomic regions from SNP 56771 to 57371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,712 DEBUG Processing 110/1109 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,786 DEBUG Processing 131/456 atomic regions from SNP 39017 to 39617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:19,817 DEBUG Processing 205/834 atomic regions from SNP 61227 to 61827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:19,840 DEBUG Processing 134/1000 atomic regions from SNP 39984 to 40584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:19,907 DEBUG Processing 191/858 atomic regions from SNP 57071 to 57671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:19,956 DEBUG Processing 111/1109 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:19,991 DEBUG Processing 132/456 atomic regions from SNP 39317 to 39917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,030 DEBUG Processing 206/834 atomic regions from SNP 61527 to 62127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,089 DEBUG Processing 135/1000 atomic regions from SNP 40284 to 40884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,116 DEBUG Processing 192/858 atomic regions from SNP 57371 to 57971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,194 DEBUG Processing 133/456 atomic regions from SNP 39617 to 40217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,199 DEBUG Processing 112/1109 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,239 DEBUG Processing 207/834 atomic regions from SNP 61827 to 62427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,326 DEBUG Processing 193/858 atomic regions from SNP 57671 to 58271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,337 DEBUG Processing 136/1000 atomic regions from SNP 40584 to 41184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,400 DEBUG Processing 134/456 atomic regions from SNP 39917 to 40517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,441 DEBUG Processing 113/1109 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,446 DEBUG Processing 208/834 atomic regions from SNP 62127 to 62727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,535 DEBUG Processing 194/858 atomic regions from SNP 57971 to 58571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,574 DEBUG Processing 137/1000 atomic regions from SNP 40884 to 41484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,606 DEBUG Processing 135/456 atomic regions from SNP 40217 to 40817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,655 DEBUG Processing 209/834 atomic regions from SNP 62427 to 63027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,682 DEBUG Processing 114/1109 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,742 DEBUG Processing 195/858 atomic regions from SNP 58271 to 58871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:20,815 DEBUG Processing 136/456 atomic regions from SNP 40517 to 41117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:20,832 DEBUG Processing 138/1000 atomic regions from SNP 41184 to 41784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:20,865 DEBUG Processing 210/834 atomic regions from SNP 62727 to 63327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:20,925 DEBUG Processing 115/1109 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:20,951 DEBUG Processing 196/858 atomic regions from SNP 58571 to 59171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,024 DEBUG Processing 137/456 atomic regions from SNP 40817 to 41417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,077 DEBUG Processing 139/1000 atomic regions from SNP 41484 to 42084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,077 DEBUG Processing 211/834 atomic regions from SNP 63027 to 63627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,159 DEBUG Processing 197/858 atomic regions from SNP 58871 to 59471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,167 DEBUG Processing 116/1109 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,228 DEBUG Processing 138/456 atomic regions from SNP 41117 to 41717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,290 DEBUG Processing 212/834 atomic regions from SNP 63327 to 63927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,312 DEBUG Processing 140/1000 atomic regions from SNP 41784 to 42384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,370 DEBUG Processing 198/858 atomic regions from SNP 59171 to 59771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,415 DEBUG Processing 117/1109 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,431 DEBUG Processing 139/456 atomic regions from SNP 41417 to 42017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,501 DEBUG Processing 213/834 atomic regions from SNP 63627 to 64227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,568 DEBUG Processing 141/1000 atomic regions from SNP 42084 to 42684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,578 DEBUG Processing 199/858 atomic regions from SNP 59471 to 60071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,635 DEBUG Processing 140/456 atomic regions from SNP 41717 to 42317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,658 DEBUG Processing 118/1109 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,711 DEBUG Processing 214/834 atomic regions from SNP 63927 to 64527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,755 DEBUG Segmenting atomic regions: 2025-01-31 09:41:21,785 DEBUG Processing 200/858 atomic regions from SNP 59771 to 60371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:21,818 DEBUG Processing 142/1000 atomic regions from SNP 42384 to 42984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:21,840 DEBUG Processing 141/456 atomic regions from SNP 42017 to 42617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:21,863 DEBUG Processing 1/633 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:21,905 DEBUG Processing 119/1109 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:21,921 DEBUG Processing 215/834 atomic regions from SNP 64227 to 64827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:21,992 DEBUG Processing 201/858 atomic regions from SNP 60071 to 60671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,047 DEBUG Processing 142/456 atomic regions from SNP 42317 to 42917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,066 DEBUG Processing 143/1000 atomic regions from SNP 42684 to 43284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,095 DEBUG Processing 2/633 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,134 DEBUG Processing 216/834 atomic regions from SNP 64527 to 65127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,151 DEBUG Processing 120/1109 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,197 DEBUG Processing 202/858 atomic regions from SNP 60371 to 60971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,252 DEBUG Processing 143/456 atomic regions from SNP 42617 to 43217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,304 DEBUG Processing 144/1000 atomic regions from SNP 42984 to 43584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,326 DEBUG Processing 3/633 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,351 DEBUG Processing 217/834 atomic regions from SNP 64827 to 65427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,401 DEBUG Processing 121/1109 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,408 DEBUG Processing 203/858 atomic regions from SNP 60671 to 61271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,454 DEBUG Processing 144/456 atomic regions from SNP 42917 to 43517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,534 DEBUG Processing 4/633 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,543 DEBUG Processing 145/1000 atomic regions from SNP 43284 to 43884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,567 DEBUG Processing 218/834 atomic regions from SNP 65127 to 65727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,619 DEBUG Processing 204/858 atomic regions from SNP 60971 to 61571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,647 DEBUG Processing 122/1109 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,656 DEBUG Processing 145/456 atomic regions from SNP 43217 to 43817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,759 DEBUG Processing 5/633 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,781 DEBUG Processing 146/1000 atomic regions from SNP 43584 to 44184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:22,784 DEBUG Processing 219/834 atomic regions from SNP 65427 to 66027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:22,832 DEBUG Processing 205/858 atomic regions from SNP 61271 to 61871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,860 DEBUG Processing 146/456 atomic regions from SNP 43517 to 44117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:22,894 DEBUG Processing 123/1109 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:22,993 DEBUG Processing 6/633 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:22,996 DEBUG Processing 220/834 atomic regions from SNP 65727 to 66327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,019 DEBUG Processing 147/1000 atomic regions from SNP 43884 to 44484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,043 DEBUG Processing 206/858 atomic regions from SNP 61571 to 62171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,065 DEBUG Processing 147/456 atomic regions from SNP 43817 to 44417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,134 DEBUG Processing 124/1109 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,198 DEBUG Processing 7/633 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,208 DEBUG Processing 221/834 atomic regions from SNP 66027 to 66627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,255 DEBUG Processing 207/858 atomic regions from SNP 61871 to 62471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,271 DEBUG Processing 148/456 atomic regions from SNP 44117 to 44717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,275 DEBUG Processing 148/1000 atomic regions from SNP 44184 to 44784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,376 DEBUG Processing 125/1109 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,405 DEBUG Processing 8/633 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,418 DEBUG Processing 222/834 atomic regions from SNP 66327 to 66927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,466 DEBUG Processing 208/858 atomic regions from SNP 62171 to 62771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,476 DEBUG Processing 149/456 atomic regions from SNP 44417 to 45017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,531 DEBUG Processing 149/1000 atomic regions from SNP 44484 to 45084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,618 DEBUG Processing 126/1109 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,626 DEBUG Processing 9/633 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,627 DEBUG Processing 223/834 atomic regions from SNP 66627 to 67227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,676 DEBUG Processing 209/858 atomic regions from SNP 62471 to 63071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,681 DEBUG Processing 150/456 atomic regions from SNP 44717 to 45317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,776 DEBUG Processing 150/1000 atomic regions from SNP 44784 to 45384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:23,840 DEBUG Processing 224/834 atomic regions from SNP 66927 to 67527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,858 DEBUG Processing 10/633 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:23,865 DEBUG Processing 127/1109 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:23,888 DEBUG Processing 151/456 atomic regions from SNP 45017 to 45617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:23,892 DEBUG Processing 210/858 atomic regions from SNP 62771 to 63371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,013 DEBUG Processing 151/1000 atomic regions from SNP 45084 to 45684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,056 DEBUG Processing 225/834 atomic regions from SNP 67227 to 67827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,067 DEBUG Processing 11/633 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,093 DEBUG Processing 152/456 atomic regions from SNP 45317 to 45917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,105 DEBUG Processing 211/858 atomic regions from SNP 63071 to 63671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,113 DEBUG Processing 128/1109 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,246 DEBUG Processing 152/1000 atomic regions from SNP 45384 to 45984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,269 DEBUG Processing 226/834 atomic regions from SNP 67527 to 68127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,275 DEBUG Processing 12/633 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,299 DEBUG Processing 153/456 atomic regions from SNP 45617 to 46217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,318 DEBUG Processing 212/858 atomic regions from SNP 63371 to 63971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,361 DEBUG Processing 129/1109 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,482 DEBUG Processing 227/834 atomic regions from SNP 67827 to 68427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,483 DEBUG Processing 153/1000 atomic regions from SNP 45684 to 46284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,483 DEBUG Processing 13/633 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,507 DEBUG Processing 154/456 atomic regions from SNP 45917 to 46517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,531 DEBUG Processing 213/858 atomic regions from SNP 63671 to 64271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,609 DEBUG Processing 130/1109 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,702 DEBUG Processing 228/834 atomic regions from SNP 68127 to 68727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,709 DEBUG Processing 14/633 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,717 DEBUG Processing 155/456 atomic regions from SNP 46217 to 46817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,725 DEBUG Processing 154/1000 atomic regions from SNP 45984 to 46584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:24,748 DEBUG Processing 214/858 atomic regions from SNP 63971 to 64571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,857 DEBUG Processing 131/1109 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:24,922 DEBUG Processing 229/834 atomic regions from SNP 68427 to 69027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,929 DEBUG Processing 156/456 atomic regions from SNP 46517 to 47117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:24,946 DEBUG Processing 15/633 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:24,965 DEBUG Processing 215/858 atomic regions from SNP 64271 to 64871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,977 DEBUG Processing 155/1000 atomic regions from SNP 46284 to 46884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,105 DEBUG Processing 132/1109 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,141 DEBUG Processing 157/456 atomic regions from SNP 46817 to 47417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,143 DEBUG Processing 230/834 atomic regions from SNP 68727 to 69327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,166 DEBUG Processing 16/633 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,183 DEBUG Processing 216/858 atomic regions from SNP 64571 to 65171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,239 DEBUG Processing 156/1000 atomic regions from SNP 46584 to 47184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,351 DEBUG Processing 158/456 atomic regions from SNP 47117 to 47717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,354 DEBUG Processing 133/1109 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,359 DEBUG Processing 231/834 atomic regions from SNP 69027 to 69627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,389 DEBUG Processing 17/633 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,399 DEBUG Processing 217/858 atomic regions from SNP 64871 to 65471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,494 DEBUG Processing 157/1000 atomic regions from SNP 46884 to 47484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,559 DEBUG Processing 159/456 atomic regions from SNP 47417 to 48017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,573 DEBUG Processing 232/834 atomic regions from SNP 69327 to 69927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,604 DEBUG Processing 18/633 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,608 DEBUG Processing 134/1109 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,619 DEBUG Processing 218/858 atomic regions from SNP 65171 to 65771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,762 DEBUG Processing 158/1000 atomic regions from SNP 47184 to 47784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:25,768 DEBUG Processing 160/456 atomic regions from SNP 47717 to 48317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:25,788 DEBUG Processing 233/834 atomic regions from SNP 69627 to 70227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,828 DEBUG Processing 19/633 atomic regions from SNP 5418 to 6018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:25,846 DEBUG Processing 219/858 atomic regions from SNP 65471 to 66071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,871 DEBUG Processing 135/1109 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:25,979 DEBUG Processing 161/456 atomic regions from SNP 48017 to 48617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,005 DEBUG Processing 234/834 atomic regions from SNP 69927 to 70527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,027 DEBUG Processing 159/1000 atomic regions from SNP 47484 to 48084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,056 DEBUG Processing 20/633 atomic regions from SNP 5718 to 6318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,073 DEBUG Processing 220/858 atomic regions from SNP 65771 to 66371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,134 DEBUG Processing 136/1109 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,191 DEBUG Processing 162/456 atomic regions from SNP 48317 to 48917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,221 DEBUG Processing 235/834 atomic regions from SNP 70227 to 70827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,279 DEBUG Processing 21/633 atomic regions from SNP 6018 to 6618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,297 DEBUG Processing 160/1000 atomic regions from SNP 47784 to 48384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,305 DEBUG Processing 221/858 atomic regions from SNP 66071 to 66671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,400 DEBUG Processing 137/1109 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,410 DEBUG Processing 163/456 atomic regions from SNP 48617 to 49217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,441 DEBUG Processing 236/834 atomic regions from SNP 70527 to 71127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,503 DEBUG Processing 22/633 atomic regions from SNP 6318 to 6918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,537 DEBUG Processing 222/858 atomic regions from SNP 66371 to 66971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,544 DEBUG Processing 161/1000 atomic regions from SNP 48084 to 48684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,631 DEBUG Processing 164/456 atomic regions from SNP 48917 to 49517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,663 DEBUG Processing 138/1109 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,670 DEBUG Processing 237/834 atomic regions from SNP 70827 to 71427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,738 DEBUG Processing 23/633 atomic regions from SNP 6618 to 7218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:26,771 DEBUG Processing 223/858 atomic regions from SNP 66671 to 67271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,824 DEBUG Processing 162/1000 atomic regions from SNP 48384 to 48984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:26,855 DEBUG Processing 165/456 atomic regions from SNP 49217 to 49817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:26,898 DEBUG Processing 238/834 atomic regions from SNP 71127 to 71727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,927 DEBUG Processing 139/1109 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:26,980 DEBUG Processing 24/633 atomic regions from SNP 6918 to 7518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,003 DEBUG Processing 224/858 atomic regions from SNP 66971 to 67571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,079 DEBUG Processing 166/456 atomic regions from SNP 49517 to 50117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,108 DEBUG Processing 163/1000 atomic regions from SNP 48684 to 49284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,125 DEBUG Processing 239/834 atomic regions from SNP 71427 to 72027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,186 DEBUG Processing 140/1109 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,203 DEBUG Processing 25/633 atomic regions from SNP 7218 to 7818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,231 DEBUG Processing 225/858 atomic regions from SNP 67271 to 67871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,298 DEBUG Processing 167/456 atomic regions from SNP 49817 to 50417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,347 DEBUG Processing 240/834 atomic regions from SNP 71727 to 72327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,373 DEBUG Processing 164/1000 atomic regions from SNP 48984 to 49584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,431 DEBUG Processing 26/633 atomic regions from SNP 7518 to 8118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,445 DEBUG Processing 141/1109 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,459 DEBUG Processing 226/858 atomic regions from SNP 67571 to 68171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,514 DEBUG Processing 168/456 atomic regions from SNP 50117 to 50717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,570 DEBUG Processing 241/834 atomic regions from SNP 72027 to 72627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,620 DEBUG Processing 165/1000 atomic regions from SNP 49284 to 49884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,647 DEBUG Processing 27/633 atomic regions from SNP 7818 to 8418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,681 DEBUG Processing 227/858 atomic regions from SNP 67871 to 68471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,704 DEBUG Processing 142/1109 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:27,726 DEBUG Processing 169/456 atomic regions from SNP 50417 to 51017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,789 DEBUG Processing 242/834 atomic regions from SNP 72327 to 72927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,862 DEBUG Processing 28/633 atomic regions from SNP 8118 to 8718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:27,865 DEBUG Processing 166/1000 atomic regions from SNP 49584 to 50184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:27,901 DEBUG Processing 228/858 atomic regions from SNP 68171 to 68771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,940 DEBUG Processing 170/456 atomic regions from SNP 50717 to 51317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:27,959 DEBUG Processing 143/1109 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,021 DEBUG Processing 243/834 atomic regions from SNP 72627 to 73227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,076 DEBUG Processing 29/633 atomic regions from SNP 8418 to 9018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,116 DEBUG Processing 229/858 atomic regions from SNP 68471 to 69071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,123 DEBUG Processing 167/1000 atomic regions from SNP 49884 to 50484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,154 DEBUG Processing 171/456 atomic regions from SNP 51017 to 51617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,208 DEBUG Processing 144/1109 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,238 DEBUG Processing 244/834 atomic regions from SNP 72927 to 73527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,290 DEBUG Processing 30/633 atomic regions from SNP 8718 to 9318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,333 DEBUG Processing 230/858 atomic regions from SNP 68771 to 69371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,360 DEBUG Processing 172/456 atomic regions from SNP 51317 to 51917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,383 DEBUG Processing 168/1000 atomic regions from SNP 50184 to 50784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,452 DEBUG Processing 245/834 atomic regions from SNP 73227 to 73827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,458 DEBUG Processing 145/1109 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,503 DEBUG Processing 31/633 atomic regions from SNP 9018 to 9618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,547 DEBUG Processing 231/858 atomic regions from SNP 69071 to 69671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,563 DEBUG Processing 173/456 atomic regions from SNP 51617 to 52217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,628 DEBUG Processing 169/1000 atomic regions from SNP 50484 to 51084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,664 DEBUG Processing 246/834 atomic regions from SNP 73527 to 74127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,711 DEBUG Processing 146/1109 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,716 DEBUG Processing 32/633 atomic regions from SNP 9318 to 9918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,762 DEBUG Processing 232/858 atomic regions from SNP 69371 to 69971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,767 DEBUG Processing 174/456 atomic regions from SNP 51917 to 52517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,867 DEBUG Processing 170/1000 atomic regions from SNP 50784 to 51384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:28,879 DEBUG Processing 247/834 atomic regions from SNP 73827 to 74427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,938 DEBUG Processing 33/633 atomic regions from SNP 9618 to 10218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:28,974 DEBUG Processing 147/1109 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:28,976 DEBUG Processing 175/456 atomic regions from SNP 52217 to 52817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:28,990 DEBUG Processing 233/858 atomic regions from SNP 69671 to 70271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,095 DEBUG Processing 248/834 atomic regions from SNP 74127 to 74727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,121 DEBUG Processing 171/1000 atomic regions from SNP 51084 to 51684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,156 DEBUG Processing 34/633 atomic regions from SNP 9918 to 10518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,186 DEBUG Processing 176/456 atomic regions from SNP 52517 to 53117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,214 DEBUG Processing 234/858 atomic regions from SNP 69971 to 70571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,237 DEBUG Processing 148/1109 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,315 DEBUG Processing 249/834 atomic regions from SNP 74427 to 75027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,367 DEBUG Processing 35/633 atomic regions from SNP 10218 to 10818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,380 DEBUG Processing 172/1000 atomic regions from SNP 51384 to 51984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,393 DEBUG Processing 177/456 atomic regions from SNP 52817 to 53417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,432 DEBUG Processing 235/858 atomic regions from SNP 70271 to 70871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,492 DEBUG Processing 149/1109 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,532 DEBUG Processing 250/834 atomic regions from SNP 74727 to 75327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,580 DEBUG Processing 36/633 atomic regions from SNP 10518 to 11118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,601 DEBUG Processing 178/456 atomic regions from SNP 53117 to 53717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,643 DEBUG Processing 173/1000 atomic regions from SNP 51684 to 52284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,652 DEBUG Processing 236/858 atomic regions from SNP 70571 to 71171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,751 DEBUG Processing 150/1109 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:29,751 DEBUG Processing 251/834 atomic regions from SNP 75027 to 75627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,797 DEBUG Processing 37/633 atomic regions from SNP 10818 to 11418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:29,810 DEBUG Processing 179/456 atomic regions from SNP 53417 to 54017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:29,875 DEBUG Processing 237/858 atomic regions from SNP 70871 to 71471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,915 DEBUG Processing 174/1000 atomic regions from SNP 51984 to 52584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:29,971 DEBUG Processing 252/834 atomic regions from SNP 75327 to 75927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,013 DEBUG Processing 151/1109 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,016 DEBUG Processing 38/633 atomic regions from SNP 11118 to 11718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,023 DEBUG Processing 180/456 atomic regions from SNP 53717 to 54317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,097 DEBUG Processing 238/858 atomic regions from SNP 71171 to 71771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,187 DEBUG Processing 175/1000 atomic regions from SNP 52284 to 52884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,193 DEBUG Processing 253/834 atomic regions from SNP 75627 to 76227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,239 DEBUG Processing 39/633 atomic regions from SNP 11418 to 12018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,241 DEBUG Processing 181/456 atomic regions from SNP 54017 to 54617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,278 DEBUG Processing 152/1109 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,321 DEBUG Processing 239/858 atomic regions from SNP 71471 to 72071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,420 DEBUG Processing 254/834 atomic regions from SNP 75927 to 76527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,460 DEBUG Processing 182/456 atomic regions from SNP 54317 to 54917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,460 DEBUG Processing 40/633 atomic regions from SNP 11718 to 12318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,469 DEBUG Processing 176/1000 atomic regions from SNP 52584 to 53184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,540 DEBUG Processing 153/1109 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,544 DEBUG Processing 240/858 atomic regions from SNP 71771 to 72371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,644 DEBUG Processing 255/834 atomic regions from SNP 76227 to 76827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,679 DEBUG Processing 183/456 atomic regions from SNP 54617 to 55217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,681 DEBUG Processing 41/633 atomic regions from SNP 12018 to 12618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,729 DEBUG Processing 177/1000 atomic regions from SNP 52884 to 53484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,768 DEBUG Processing 241/858 atomic regions from SNP 72071 to 72671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,802 DEBUG Processing 154/1109 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:30,863 DEBUG Processing 256/834 atomic regions from SNP 76527 to 77127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,894 DEBUG Processing 184/456 atomic regions from SNP 54917 to 55517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:30,903 DEBUG Processing 42/633 atomic regions from SNP 12318 to 12918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:30,972 DEBUG Processing 178/1000 atomic regions from SNP 53184 to 53784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:30,998 DEBUG Processing 242/858 atomic regions from SNP 72371 to 72971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,068 DEBUG Processing 155/1109 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,084 DEBUG Processing 257/834 atomic regions from SNP 76827 to 77427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,109 DEBUG Processing 185/456 atomic regions from SNP 55217 to 55817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,122 DEBUG Processing 43/633 atomic regions from SNP 12618 to 13218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,211 DEBUG Processing 179/1000 atomic regions from SNP 53484 to 54084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,220 DEBUG Processing 243/858 atomic regions from SNP 72671 to 73271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,312 DEBUG Processing 258/834 atomic regions from SNP 77127 to 77727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,327 DEBUG Processing 156/1109 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,330 DEBUG Processing 186/456 atomic regions from SNP 55517 to 56117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,340 DEBUG Processing 44/633 atomic regions from SNP 12918 to 13518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,443 DEBUG Processing 244/858 atomic regions from SNP 72971 to 73571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,457 DEBUG Processing 180/1000 atomic regions from SNP 53784 to 54384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,541 DEBUG Processing 259/834 atomic regions from SNP 77427 to 78027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,552 DEBUG Processing 187/456 atomic regions from SNP 55817 to 56417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,558 DEBUG Processing 45/633 atomic regions from SNP 13218 to 13818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,587 DEBUG Processing 157/1109 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,662 DEBUG Processing 245/858 atomic regions from SNP 73271 to 73871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,700 DEBUG Processing 181/1000 atomic regions from SNP 54084 to 54684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,767 DEBUG Processing 260/834 atomic regions from SNP 77727 to 78327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,770 DEBUG Processing 188/456 atomic regions from SNP 56117 to 56717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,776 DEBUG Processing 46/633 atomic regions from SNP 13518 to 14118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:31,849 DEBUG Processing 158/1109 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:31,885 DEBUG Processing 246/858 atomic regions from SNP 73571 to 74171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,954 DEBUG Processing 182/1000 atomic regions from SNP 54384 to 54984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:31,989 DEBUG Processing 261/834 atomic regions from SNP 78027 to 78627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,990 DEBUG Processing 189/456 atomic regions from SNP 56417 to 57017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:31,992 DEBUG Processing 47/633 atomic regions from SNP 13818 to 14418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,107 DEBUG Processing 247/858 atomic regions from SNP 73871 to 74471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,108 DEBUG Processing 159/1109 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,201 DEBUG Processing 183/1000 atomic regions from SNP 54684 to 55284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,206 DEBUG Processing 48/633 atomic regions from SNP 14118 to 14718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,209 DEBUG Processing 190/456 atomic regions from SNP 56717 to 57317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,213 DEBUG Processing 262/834 atomic regions from SNP 78327 to 78927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,325 DEBUG Processing 248/858 atomic regions from SNP 74171 to 74771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,363 DEBUG Processing 160/1109 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,421 DEBUG Processing 49/633 atomic regions from SNP 14418 to 15018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,433 DEBUG Processing 191/456 atomic regions from SNP 57017 to 57617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,441 DEBUG Processing 263/834 atomic regions from SNP 78627 to 79227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,453 DEBUG Processing 184/1000 atomic regions from SNP 54984 to 55584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,556 DEBUG Processing 249/858 atomic regions from SNP 74471 to 75071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,623 DEBUG Processing 161/1109 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,639 DEBUG Processing 50/633 atomic regions from SNP 14718 to 15318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,654 DEBUG Processing 192/456 atomic regions from SNP 57317 to 57917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,670 DEBUG Processing 264/834 atomic regions from SNP 78927 to 79527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,704 DEBUG Processing 185/1000 atomic regions from SNP 55284 to 55884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,807 DEBUG Processing 250/858 atomic regions from SNP 74771 to 75371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,859 DEBUG Processing 51/633 atomic regions from SNP 15018 to 15618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:32,876 DEBUG Processing 193/456 atomic regions from SNP 57617 to 58217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:32,885 DEBUG Processing 162/1109 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:32,899 DEBUG Processing 265/834 atomic regions from SNP 79227 to 79827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,951 DEBUG Processing 186/1000 atomic regions from SNP 55584 to 56184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,056 DEBUG Processing 251/858 atomic regions from SNP 75071 to 75671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,078 DEBUG Processing 52/633 atomic regions from SNP 15318 to 15918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,095 DEBUG Processing 194/456 atomic regions from SNP 57917 to 58517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,124 DEBUG Processing 266/834 atomic regions from SNP 79527 to 80127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,149 DEBUG Processing 163/1109 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,208 DEBUG Processing 187/1000 atomic regions from SNP 55884 to 56484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,292 DEBUG Processing 53/633 atomic regions from SNP 15618 to 16218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,300 DEBUG Processing 252/858 atomic regions from SNP 75371 to 75971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,306 DEBUG Processing 195/456 atomic regions from SNP 58217 to 58817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,342 DEBUG Processing 267/834 atomic regions from SNP 79827 to 80427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,410 DEBUG Processing 164/1109 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,472 DEBUG Processing 188/1000 atomic regions from SNP 56184 to 56784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,506 DEBUG Processing 54/633 atomic regions from SNP 15918 to 16518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,518 DEBUG Processing 196/456 atomic regions from SNP 58517 to 59117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,536 DEBUG Processing 253/858 atomic regions from SNP 75671 to 76271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,557 DEBUG Processing 268/834 atomic regions from SNP 80127 to 80727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,665 DEBUG Processing 165/1109 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,716 DEBUG Processing 189/1000 atomic regions from SNP 56484 to 57084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,718 DEBUG Processing 55/633 atomic regions from SNP 16218 to 16818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,745 DEBUG Processing 197/456 atomic regions from SNP 58817 to 59417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,758 DEBUG Processing 254/858 atomic regions from SNP 75971 to 76571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,781 DEBUG Processing 269/834 atomic regions from SNP 80427 to 81027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,924 DEBUG Processing 166/1109 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:33,934 DEBUG Processing 56/633 atomic regions from SNP 16518 to 17118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:33,964 DEBUG Processing 190/1000 atomic regions from SNP 56784 to 57384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,965 DEBUG Processing 198/456 atomic regions from SNP 59117 to 59717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:33,979 DEBUG Processing 255/858 atomic regions from SNP 76271 to 76871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,002 DEBUG Processing 270/834 atomic regions from SNP 80727 to 81327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,148 DEBUG Processing 57/633 atomic regions from SNP 16818 to 17418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,188 DEBUG Processing 199/456 atomic regions from SNP 59417 to 60017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,191 DEBUG Processing 167/1109 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,203 DEBUG Processing 256/858 atomic regions from SNP 76571 to 77171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,224 DEBUG Processing 191/1000 atomic regions from SNP 57084 to 57684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,227 DEBUG Processing 271/834 atomic regions from SNP 81027 to 81627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,364 DEBUG Processing 58/633 atomic regions from SNP 17118 to 17718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,416 DEBUG Processing 200/456 atomic regions from SNP 59717 to 60317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,431 DEBUG Processing 257/858 atomic regions from SNP 76871 to 77471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,455 DEBUG Processing 272/834 atomic regions from SNP 81327 to 81927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,474 DEBUG Processing 168/1109 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,477 DEBUG Processing 192/1000 atomic regions from SNP 57384 to 57984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,617 DEBUG Processing 59/633 atomic regions from SNP 17418 to 18018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,652 DEBUG Processing 201/456 atomic regions from SNP 60017 to 60617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,658 DEBUG Processing 258/858 atomic regions from SNP 77171 to 77771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,684 DEBUG Processing 273/834 atomic regions from SNP 81627 to 82227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,728 DEBUG Processing 193/1000 atomic regions from SNP 57684 to 58284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,747 DEBUG Processing 169/1109 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:34,833 DEBUG Processing 60/633 atomic regions from SNP 17718 to 18318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:34,880 DEBUG Processing 259/858 atomic regions from SNP 77471 to 78071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,899 DEBUG Processing 202/456 atomic regions from SNP 60317 to 60917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:34,911 DEBUG Processing 274/834 atomic regions from SNP 81927 to 82527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,974 DEBUG Processing 194/1000 atomic regions from SNP 57984 to 58584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,021 DEBUG Processing 170/1109 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,046 DEBUG Processing 61/633 atomic regions from SNP 18018 to 18618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,101 DEBUG Processing 260/858 atomic regions from SNP 77771 to 78371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,129 DEBUG Processing 203/456 atomic regions from SNP 60617 to 61217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,136 DEBUG Processing 275/834 atomic regions from SNP 82227 to 82827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,218 DEBUG Processing 195/1000 atomic regions from SNP 58284 to 58884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,263 DEBUG Processing 62/633 atomic regions from SNP 18318 to 18918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,290 DEBUG Processing 171/1109 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,325 DEBUG Processing 261/858 atomic regions from SNP 78071 to 78671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,363 DEBUG Processing 276/834 atomic regions from SNP 82527 to 83127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,373 DEBUG Processing 204/456 atomic regions from SNP 60917 to 61517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,461 DEBUG Processing 196/1000 atomic regions from SNP 58584 to 59184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,484 DEBUG Processing 63/633 atomic regions from SNP 18618 to 19218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,556 DEBUG Processing 262/858 atomic regions from SNP 78371 to 78971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,584 DEBUG Processing 172/1109 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,596 DEBUG Processing 277/834 atomic regions from SNP 82827 to 83427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,600 DEBUG Processing 205/456 atomic regions from SNP 61217 to 61817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,699 DEBUG Processing 64/633 atomic regions from SNP 18918 to 19518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,704 DEBUG Processing 197/1000 atomic regions from SNP 58884 to 59484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,783 DEBUG Processing 263/858 atomic regions from SNP 78671 to 79271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,825 DEBUG Processing 206/456 atomic regions from SNP 61517 to 62117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:35,830 DEBUG Processing 278/834 atomic regions from SNP 83127 to 83727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,852 DEBUG Processing 173/1109 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:35,918 DEBUG Processing 65/633 atomic regions from SNP 19218 to 19818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:35,954 DEBUG Processing 198/1000 atomic regions from SNP 59184 to 59784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,007 DEBUG Processing 264/858 atomic regions from SNP 78971 to 79571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,055 DEBUG Processing 207/456 atomic regions from SNP 61817 to 62417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,068 DEBUG Processing 279/834 atomic regions from SNP 83427 to 84027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,145 DEBUG Processing 174/1109 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,145 DEBUG Processing 66/633 atomic regions from SNP 19518 to 20118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,218 DEBUG Processing 199/1000 atomic regions from SNP 59484 to 60084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,237 DEBUG Processing 265/858 atomic regions from SNP 79271 to 79871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,294 DEBUG Processing 208/456 atomic regions from SNP 62117 to 62717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,314 DEBUG Processing 280/834 atomic regions from SNP 83727 to 84327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,377 DEBUG Processing 67/633 atomic regions from SNP 19818 to 20418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,436 DEBUG Processing 175/1109 atomic regions from SNP 52374 to 52974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,472 DEBUG Processing 266/858 atomic regions from SNP 79571 to 80171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,488 DEBUG Processing 200/1000 atomic regions from SNP 59784 to 60384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,534 DEBUG Processing 209/456 atomic regions from SNP 62417 to 63017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,564 DEBUG Processing 281/834 atomic regions from SNP 84027 to 84627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,613 DEBUG Processing 68/633 atomic regions from SNP 20118 to 20718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,714 DEBUG Processing 267/858 atomic regions from SNP 79871 to 80471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,714 DEBUG Processing 176/1109 atomic regions from SNP 52674 to 53274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:36,757 DEBUG Processing 201/1000 atomic regions from SNP 60084 to 60684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,778 DEBUG Processing 210/456 atomic regions from SNP 62717 to 63317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:36,817 DEBUG Processing 282/834 atomic regions from SNP 84327 to 84927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,848 DEBUG Processing 69/633 atomic regions from SNP 20418 to 21018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:36,956 DEBUG Processing 268/858 atomic regions from SNP 80171 to 80771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,992 DEBUG Processing 177/1109 atomic regions from SNP 52974 to 53574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,024 DEBUG Processing 211/456 atomic regions from SNP 63017 to 63617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:37,030 DEBUG Processing 202/1000 atomic regions from SNP 60384 to 60984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,070 DEBUG Processing 283/834 atomic regions from SNP 84627 to 85227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,084 DEBUG Processing 70/633 atomic regions from SNP 20718 to 21318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,204 DEBUG Processing 269/858 atomic regions from SNP 80471 to 81071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,350 DEBUG Processing 178/1109 atomic regions from SNP 53274 to 53874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,357 DEBUG Processing 212/456 atomic regions from SNP 63317 to 63917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:37,411 DEBUG Processing 203/1000 atomic regions from SNP 60684 to 61284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,426 DEBUG Processing 284/834 atomic regions from SNP 84927 to 85527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,447 DEBUG Processing 71/633 atomic regions from SNP 21018 to 21618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,487 DEBUG Processing 270/858 atomic regions from SNP 80771 to 81371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,588 DEBUG Processing 213/456 atomic regions from SNP 63617 to 64217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:37,618 DEBUG Processing 179/1109 atomic regions from SNP 53574 to 54174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,679 DEBUG Processing 285/834 atomic regions from SNP 85227 to 85827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,679 DEBUG Processing 204/1000 atomic regions from SNP 60984 to 61584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,692 DEBUG Processing 72/633 atomic regions from SNP 21318 to 21918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,740 DEBUG Processing 271/858 atomic regions from SNP 81071 to 81671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,804 DEBUG Processing 214/456 atomic regions from SNP 63917 to 64517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:37,879 DEBUG Processing 180/1109 atomic regions from SNP 53874 to 54474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:37,913 DEBUG Processing 286/834 atomic regions from SNP 85527 to 86127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,922 DEBUG Processing 73/633 atomic regions from SNP 21618 to 22218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:37,938 DEBUG Processing 205/1000 atomic regions from SNP 61284 to 61884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,976 DEBUG Processing 272/858 atomic regions from SNP 81371 to 81971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,019 DEBUG Processing 215/456 atomic regions from SNP 64217 to 64817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,153 DEBUG Processing 287/834 atomic regions from SNP 85827 to 86427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,156 DEBUG Processing 74/633 atomic regions from SNP 21918 to 22518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,167 DEBUG Processing 181/1109 atomic regions from SNP 54174 to 54774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,201 DEBUG Processing 206/1000 atomic regions from SNP 61584 to 62184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,216 DEBUG Processing 273/858 atomic regions from SNP 81671 to 82271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,241 DEBUG Processing 216/456 atomic regions from SNP 64517 to 65117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,380 DEBUG Processing 75/633 atomic regions from SNP 22218 to 22818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,387 DEBUG Processing 288/834 atomic regions from SNP 86127 to 86727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,449 DEBUG Processing 274/858 atomic regions from SNP 81971 to 82571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,457 DEBUG Processing 182/1109 atomic regions from SNP 54474 to 55074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,457 DEBUG Processing 207/1000 atomic regions from SNP 61884 to 62484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,462 DEBUG Processing 217/456 atomic regions from SNP 64817 to 65417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,597 DEBUG Processing 76/633 atomic regions from SNP 22518 to 23118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,616 DEBUG Processing 289/834 atomic regions from SNP 86427 to 87027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,676 DEBUG Processing 275/858 atomic regions from SNP 82271 to 82871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,679 DEBUG Processing 218/456 atomic regions from SNP 65117 to 65717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,708 DEBUG Processing 208/1000 atomic regions from SNP 62184 to 62784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,739 DEBUG Processing 183/1109 atomic regions from SNP 54774 to 55374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:38,811 DEBUG Processing 77/633 atomic regions from SNP 22818 to 23418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:38,840 DEBUG Processing 290/834 atomic regions from SNP 86727 to 87327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,896 DEBUG Processing 219/456 atomic regions from SNP 65417 to 66017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:38,900 DEBUG Processing 276/858 atomic regions from SNP 82571 to 83171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,959 DEBUG Processing 209/1000 atomic regions from SNP 62484 to 63084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,019 DEBUG Processing 184/1109 atomic regions from SNP 55074 to 55674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,027 DEBUG Processing 78/633 atomic regions from SNP 23118 to 23718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,068 DEBUG Processing 291/834 atomic regions from SNP 87027 to 87627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,115 DEBUG Processing 220/456 atomic regions from SNP 65717 to 66317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:39,122 DEBUG Processing 277/858 atomic regions from SNP 82871 to 83471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,218 DEBUG Processing 210/1000 atomic regions from SNP 62784 to 63384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,248 DEBUG Processing 79/633 atomic regions from SNP 23418 to 24018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,307 DEBUG Processing 185/1109 atomic regions from SNP 55374 to 55974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,307 DEBUG Processing 292/834 atomic regions from SNP 87327 to 87927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,350 DEBUG Processing 278/858 atomic regions from SNP 83171 to 83771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,352 DEBUG Processing 221/456 atomic regions from SNP 66017 to 66617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:39,464 DEBUG Processing 80/633 atomic regions from SNP 23718 to 24318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,471 DEBUG Processing 211/1000 atomic regions from SNP 63084 to 63684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,539 DEBUG Processing 293/834 atomic regions from SNP 87627 to 88227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,577 DEBUG Processing 222/456 atomic regions from SNP 66317 to 66917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:39,578 DEBUG Processing 279/858 atomic regions from SNP 83471 to 84071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,584 DEBUG Processing 186/1109 atomic regions from SNP 55674 to 56274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,680 DEBUG Processing 81/633 atomic regions from SNP 24018 to 24618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,728 DEBUG Processing 212/1000 atomic regions from SNP 63384 to 63984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,766 DEBUG Processing 294/834 atomic regions from SNP 87927 to 88527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,799 DEBUG Processing 223/456 atomic regions from SNP 66617 to 67217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:39,809 DEBUG Processing 280/858 atomic regions from SNP 83771 to 84371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,875 DEBUG Processing 187/1109 atomic regions from SNP 55974 to 56574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,899 DEBUG Processing 82/633 atomic regions from SNP 24318 to 24918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:39,994 DEBUG Processing 213/1000 atomic regions from SNP 63684 to 64284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,994 DEBUG Processing 295/834 atomic regions from SNP 88227 to 88827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,024 DEBUG Processing 224/456 atomic regions from SNP 66917 to 67517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,037 DEBUG Processing 281/858 atomic regions from SNP 84071 to 84671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,120 DEBUG Processing 83/633 atomic regions from SNP 24618 to 25218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:40,142 DEBUG Processing 188/1109 atomic regions from SNP 56274 to 56874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,233 DEBUG Processing 296/834 atomic regions from SNP 88527 to 89127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,258 DEBUG Processing 214/1000 atomic regions from SNP 63984 to 64584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,262 DEBUG Processing 225/456 atomic regions from SNP 67217 to 67817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,280 DEBUG Processing 282/858 atomic regions from SNP 84371 to 84971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,349 DEBUG Processing 84/633 atomic regions from SNP 24918 to 25518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:40,417 DEBUG Processing 189/1109 atomic regions from SNP 56574 to 57174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,535 DEBUG Processing 297/834 atomic regions from SNP 88827 to 89427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,602 DEBUG Processing 226/456 atomic regions from SNP 67517 to 68117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,627 DEBUG Processing 283/858 atomic regions from SNP 84671 to 85271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,628 DEBUG Processing 215/1000 atomic regions from SNP 64284 to 64884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,659 DEBUG Processing 85/633 atomic regions from SNP 25218 to 25818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:40,722 DEBUG Processing 190/1109 atomic regions from SNP 56874 to 57474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,830 DEBUG Processing 298/834 atomic regions from SNP 89127 to 89727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,913 DEBUG Processing 227/456 atomic regions from SNP 67817 to 68417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:40,962 DEBUG Processing 284/858 atomic regions from SNP 84971 to 85571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,965 DEBUG Processing 86/633 atomic regions from SNP 25518 to 26118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:40,987 DEBUG Processing 216/1000 atomic regions from SNP 64584 to 65184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,049 DEBUG Processing 191/1109 atomic regions from SNP 57174 to 57774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,147 DEBUG Processing 299/834 atomic regions from SNP 89427 to 90027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,284 DEBUG Processing 228/456 atomic regions from SNP 68117 to 68717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:41,322 DEBUG Processing 87/633 atomic regions from SNP 25818 to 26418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:41,326 DEBUG Processing 285/858 atomic regions from SNP 85271 to 85871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,352 DEBUG Processing 217/1000 atomic regions from SNP 64884 to 65484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,388 DEBUG Processing 192/1109 atomic regions from SNP 57474 to 58074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,416 DEBUG Processing 300/834 atomic regions from SNP 89727 to 90327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,648 DEBUG Processing 229/456 atomic regions from SNP 68417 to 69017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:41,708 DEBUG Processing 88/633 atomic regions from SNP 26118 to 26718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:41,719 DEBUG Processing 286/858 atomic regions from SNP 85571 to 86171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,744 DEBUG Processing 301/834 atomic regions from SNP 90027 to 90627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,760 DEBUG Processing 218/1000 atomic regions from SNP 65184 to 65784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,802 DEBUG Processing 193/1109 atomic regions from SNP 57774 to 58374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,000 DEBUG Processing 230/456 atomic regions from SNP 68717 to 69317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:42,088 DEBUG Processing 89/633 atomic regions from SNP 26418 to 27018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,111 DEBUG Processing 287/858 atomic regions from SNP 85871 to 86471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,126 DEBUG Processing 302/834 atomic regions from SNP 90327 to 90927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,176 DEBUG Processing 219/1000 atomic regions from SNP 65484 to 66084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,203 DEBUG Processing 194/1109 atomic regions from SNP 58074 to 58674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,233 DEBUG Processing 231/456 atomic regions from SNP 69017 to 69617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:42,370 DEBUG Processing 90/633 atomic regions from SNP 26718 to 27318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,430 DEBUG Processing 288/858 atomic regions from SNP 86171 to 86771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,441 DEBUG Processing 303/834 atomic regions from SNP 90627 to 91227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,548 DEBUG Processing 232/456 atomic regions from SNP 69317 to 69917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:42,555 DEBUG Processing 195/1109 atomic regions from SNP 58374 to 58974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,563 DEBUG Processing 220/1000 atomic regions from SNP 65784 to 66384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,656 DEBUG Processing 91/633 atomic regions from SNP 27018 to 27618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,752 DEBUG Processing 289/858 atomic regions from SNP 86471 to 87071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,759 DEBUG Processing 304/834 atomic regions from SNP 90927 to 91527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,828 DEBUG Processing 233/456 atomic regions from SNP 69617 to 70217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:42,857 DEBUG Processing 221/1000 atomic regions from SNP 66084 to 66684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,862 DEBUG Processing 196/1109 atomic regions from SNP 58674 to 59274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,881 DEBUG Processing 92/633 atomic regions from SNP 27318 to 27918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:42,984 DEBUG Processing 290/858 atomic regions from SNP 86771 to 87371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,003 DEBUG Processing 305/834 atomic regions from SNP 91227 to 91827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,168 DEBUG Processing 234/456 atomic regions from SNP 69917 to 70517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:43,190 DEBUG Processing 93/633 atomic regions from SNP 27618 to 28218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,211 DEBUG Processing 222/1000 atomic regions from SNP 66384 to 66984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,221 DEBUG Processing 197/1109 atomic regions from SNP 58974 to 59574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,254 DEBUG Processing 291/858 atomic regions from SNP 87071 to 87671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,255 DEBUG Processing 306/834 atomic regions from SNP 91527 to 92127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,397 DEBUG Processing 235/456 atomic regions from SNP 70217 to 70817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:43,419 DEBUG Processing 94/633 atomic regions from SNP 27918 to 28518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,477 DEBUG Processing 223/1000 atomic regions from SNP 66684 to 67284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,486 DEBUG Processing 198/1109 atomic regions from SNP 59274 to 59874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,491 DEBUG Processing 292/858 atomic regions from SNP 87371 to 87971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,504 DEBUG Processing 307/834 atomic regions from SNP 91827 to 92427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,624 DEBUG Processing 236/456 atomic regions from SNP 70517 to 71117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:43,636 DEBUG Processing 95/633 atomic regions from SNP 28218 to 28818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,714 DEBUG Processing 293/858 atomic regions from SNP 87671 to 88271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,735 DEBUG Processing 224/1000 atomic regions from SNP 66984 to 67584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,738 DEBUG Processing 308/834 atomic regions from SNP 92127 to 92727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,745 DEBUG Processing 199/1109 atomic regions from SNP 59574 to 60174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,847 DEBUG Processing 237/456 atomic regions from SNP 70817 to 71417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:43,854 DEBUG Processing 96/633 atomic regions from SNP 28518 to 29118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:43,944 DEBUG Processing 294/858 atomic regions from SNP 87971 to 88571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,979 DEBUG Processing 309/834 atomic regions from SNP 92427 to 93027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,002 DEBUG Processing 225/1000 atomic regions from SNP 67284 to 67884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,022 DEBUG Processing 200/1109 atomic regions from SNP 59874 to 60474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,109 DEBUG Processing 238/456 atomic regions from SNP 71117 to 71717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,116 DEBUG Processing 97/633 atomic regions from SNP 28818 to 29418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,285 DEBUG Processing 295/858 atomic regions from SNP 88271 to 88871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,311 DEBUG Processing 310/834 atomic regions from SNP 92727 to 93327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,376 DEBUG Processing 226/1000 atomic regions from SNP 67584 to 68184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,415 DEBUG Processing 201/1109 atomic regions from SNP 60174 to 60774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,444 DEBUG Processing 239/456 atomic regions from SNP 71417 to 72017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,464 DEBUG Processing 98/633 atomic regions from SNP 29118 to 29718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,536 DEBUG Processing 296/858 atomic regions from SNP 88571 to 89171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,555 DEBUG Processing 311/834 atomic regions from SNP 93027 to 93627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,645 DEBUG Processing 227/1000 atomic regions from SNP 67884 to 68484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,678 DEBUG Processing 240/456 atomic regions from SNP 71717 to 72317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,686 DEBUG Processing 202/1109 atomic regions from SNP 60474 to 61074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,696 DEBUG Processing 99/633 atomic regions from SNP 29418 to 30018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,768 DEBUG Processing 297/858 atomic regions from SNP 88871 to 89471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,790 DEBUG Processing 312/834 atomic regions from SNP 93327 to 93927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,905 DEBUG Processing 228/1000 atomic regions from SNP 68184 to 68784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,906 DEBUG Processing 241/456 atomic regions from SNP 72017 to 72617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:44,919 DEBUG Processing 100/633 atomic regions from SNP 29718 to 30318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:44,964 DEBUG Processing 203/1109 atomic regions from SNP 60774 to 61374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,993 DEBUG Processing 298/858 atomic regions from SNP 89171 to 89771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,033 DEBUG Processing 313/834 atomic regions from SNP 93627 to 94227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,132 DEBUG Processing 242/456 atomic regions from SNP 72317 to 72917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,146 DEBUG Processing 101/633 atomic regions from SNP 30018 to 30618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,162 DEBUG Processing 229/1000 atomic regions from SNP 68484 to 69084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,225 DEBUG Processing 299/858 atomic regions from SNP 89471 to 90071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,237 DEBUG Processing 204/1109 atomic regions from SNP 61074 to 61674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,281 DEBUG Processing 314/834 atomic regions from SNP 93927 to 94527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,457 DEBUG Processing 243/456 atomic regions from SNP 72617 to 73217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,483 DEBUG Processing 102/633 atomic regions from SNP 30318 to 30918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,511 DEBUG Processing 230/1000 atomic regions from SNP 68784 to 69384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,567 DEBUG Processing 300/858 atomic regions from SNP 89771 to 90371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,619 DEBUG Processing 315/834 atomic regions from SNP 94227 to 94827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,620 DEBUG Processing 205/1109 atomic regions from SNP 61374 to 61974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,700 DEBUG Processing 244/456 atomic regions from SNP 72917 to 73517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,712 DEBUG Processing 103/633 atomic regions from SNP 30618 to 31218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:45,782 DEBUG Processing 231/1000 atomic regions from SNP 69084 to 69684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,805 DEBUG Processing 301/858 atomic regions from SNP 90071 to 90671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,870 DEBUG Processing 316/834 atomic regions from SNP 94527 to 95127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,898 DEBUG Processing 206/1109 atomic regions from SNP 61674 to 62274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,933 DEBUG Processing 245/456 atomic regions from SNP 73217 to 73817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:45,933 DEBUG Processing 104/633 atomic regions from SNP 30918 to 31518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,034 DEBUG Processing 302/858 atomic regions from SNP 90371 to 90971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,041 DEBUG Processing 232/1000 atomic regions from SNP 69384 to 69984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,105 DEBUG Processing 317/834 atomic regions from SNP 94827 to 95427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,153 DEBUG Processing 105/633 atomic regions from SNP 31218 to 31818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,161 DEBUG Processing 207/1109 atomic regions from SNP 61974 to 62574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,163 DEBUG Processing 246/456 atomic regions from SNP 73517 to 74117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,313 DEBUG Processing 303/858 atomic regions from SNP 90671 to 91271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,371 DEBUG Processing 233/1000 atomic regions from SNP 69684 to 70284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,462 DEBUG Processing 318/834 atomic regions from SNP 95127 to 95727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,472 DEBUG Processing 106/633 atomic regions from SNP 31518 to 32118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,477 DEBUG Processing 247/456 atomic regions from SNP 73817 to 74417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,516 DEBUG Processing 208/1109 atomic regions from SNP 62274 to 62874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,565 DEBUG Processing 304/858 atomic regions from SNP 90971 to 91571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,631 DEBUG Processing 234/1000 atomic regions from SNP 69984 to 70584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,712 DEBUG Processing 319/834 atomic regions from SNP 95427 to 96027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,746 DEBUG Processing 107/633 atomic regions from SNP 31818 to 32418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:46,764 DEBUG Processing 248/456 atomic regions from SNP 74117 to 74717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:46,851 DEBUG Processing 209/1109 atomic regions from SNP 62574 to 63174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,904 DEBUG Processing 305/858 atomic regions from SNP 91271 to 91871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,969 DEBUG Processing 235/1000 atomic regions from SNP 70284 to 70884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,035 DEBUG Processing 320/834 atomic regions from SNP 95727 to 96327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,111 DEBUG Processing 249/456 atomic regions from SNP 74417 to 75017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,116 DEBUG Processing 108/633 atomic regions from SNP 32118 to 32718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,230 DEBUG Processing 210/1109 atomic regions from SNP 62874 to 63474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,251 DEBUG Processing 306/858 atomic regions from SNP 91571 to 92171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,296 DEBUG Processing 236/1000 atomic regions from SNP 70584 to 71184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,316 DEBUG Processing 321/834 atomic regions from SNP 96027 to 96627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,352 DEBUG Processing 109/633 atomic regions from SNP 32418 to 33018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,353 DEBUG Processing 250/456 atomic regions from SNP 74717 to 75317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,514 DEBUG Processing 211/1109 atomic regions from SNP 63174 to 63774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,534 DEBUG Processing 307/858 atomic regions from SNP 91871 to 92471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,626 DEBUG Processing 322/834 atomic regions from SNP 96327 to 96927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,634 DEBUG Processing 237/1000 atomic regions from SNP 70884 to 71484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,666 DEBUG Processing 110/633 atomic regions from SNP 32718 to 33318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:47,667 DEBUG Processing 251/456 atomic regions from SNP 75017 to 75617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:47,876 DEBUG Processing 212/1109 atomic regions from SNP 63474 to 64074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,910 DEBUG Processing 308/858 atomic regions from SNP 92171 to 92771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,982 DEBUG Processing 323/834 atomic regions from SNP 96627 to 97227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,018 DEBUG Processing 238/1000 atomic regions from SNP 71184 to 71784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,022 DEBUG Processing 252/456 atomic regions from SNP 75317 to 75917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,027 DEBUG Processing 111/633 atomic regions from SNP 33018 to 33618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,279 DEBUG Processing 213/1109 atomic regions from SNP 63774 to 64374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,282 DEBUG Processing 309/858 atomic regions from SNP 92471 to 93071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,297 DEBUG Processing 324/834 atomic regions from SNP 96927 to 97527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,363 DEBUG Processing 253/456 atomic regions from SNP 75617 to 76217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,366 DEBUG Processing 112/633 atomic regions from SNP 33318 to 33918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,392 DEBUG Processing 239/1000 atomic regions from SNP 71484 to 72084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,610 DEBUG Processing 310/858 atomic regions from SNP 92771 to 93371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,624 DEBUG Processing 325/834 atomic regions from SNP 97227 to 97827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,651 DEBUG Processing 113/633 atomic regions from SNP 33618 to 34218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,656 DEBUG Processing 214/1109 atomic regions from SNP 64074 to 64674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,661 DEBUG Processing 254/456 atomic regions from SNP 75917 to 76517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:48,714 DEBUG Processing 240/1000 atomic regions from SNP 71784 to 72384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,858 DEBUG Processing 311/858 atomic regions from SNP 93071 to 93671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,918 DEBUG Processing 326/834 atomic regions from SNP 97527 to 98127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,979 DEBUG Processing 114/633 atomic regions from SNP 33918 to 34518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:48,986 DEBUG Processing 255/456 atomic regions from SNP 76217 to 76817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:49,023 DEBUG Processing 215/1109 atomic regions from SNP 64374 to 64974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,068 DEBUG Processing 241/1000 atomic regions from SNP 72084 to 72684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,136 DEBUG Processing 312/858 atomic regions from SNP 93371 to 93971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,182 DEBUG Processing 327/834 atomic regions from SNP 97827 to 98427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,205 DEBUG Processing 115/633 atomic regions from SNP 34218 to 34818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,228 DEBUG Processing 256/456 atomic regions from SNP 76517 to 77117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:49,289 DEBUG Processing 216/1109 atomic regions from SNP 64674 to 65274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,336 DEBUG Processing 242/1000 atomic regions from SNP 72384 to 72984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,399 DEBUG Processing 313/858 atomic regions from SNP 93671 to 94271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,509 DEBUG Processing 328/834 atomic regions from SNP 98127 to 98727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,541 DEBUG Processing 116/633 atomic regions from SNP 34518 to 35118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,562 DEBUG Processing 257/456 atomic regions from SNP 76817 to 77417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:49,643 DEBUG Processing 217/1109 atomic regions from SNP 64974 to 65574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,683 DEBUG Processing 243/1000 atomic regions from SNP 72684 to 73284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,725 DEBUG Processing 314/858 atomic regions from SNP 93971 to 94571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,886 DEBUG Processing 329/834 atomic regions from SNP 98427 to 99027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,900 DEBUG Processing 117/633 atomic regions from SNP 34818 to 35418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:49,995 DEBUG Processing 258/456 atomic regions from SNP 77117 to 77717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,032 DEBUG Processing 315/858 atomic regions from SNP 94271 to 94871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,039 DEBUG Processing 218/1109 atomic regions from SNP 65274 to 65874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,040 DEBUG Processing 244/1000 atomic regions from SNP 72984 to 73584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,133 DEBUG Processing 118/633 atomic regions from SNP 35118 to 35718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,140 DEBUG Processing 330/834 atomic regions from SNP 98727 to 99327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,243 DEBUG Processing 259/456 atomic regions from SNP 77417 to 78017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,284 DEBUG Processing 316/858 atomic regions from SNP 94571 to 95171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,324 DEBUG Processing 245/1000 atomic regions from SNP 73284 to 73884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,329 DEBUG Processing 219/1109 atomic regions from SNP 65574 to 66174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,367 DEBUG Processing 119/633 atomic regions from SNP 35418 to 36018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,390 DEBUG Processing 331/834 atomic regions from SNP 99027 to 99627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,477 DEBUG Processing 260/456 atomic regions from SNP 77717 to 78317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,526 DEBUG Processing 317/858 atomic regions from SNP 94871 to 95471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,591 DEBUG Processing 246/1000 atomic regions from SNP 73584 to 74184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,597 DEBUG Processing 120/633 atomic regions from SNP 35718 to 36318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,613 DEBUG Processing 220/1109 atomic regions from SNP 65874 to 66474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,634 DEBUG Processing 332/834 atomic regions from SNP 99327 to 99927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,709 DEBUG Processing 261/456 atomic regions from SNP 78017 to 78617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,755 DEBUG Processing 318/858 atomic regions from SNP 95171 to 95771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,820 DEBUG Processing 121/633 atomic regions from SNP 36018 to 36618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:50,851 DEBUG Processing 247/1000 atomic regions from SNP 73884 to 74484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,870 DEBUG Processing 333/834 atomic regions from SNP 99627 to 100227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,876 DEBUG Processing 221/1109 atomic regions from SNP 66174 to 66774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,932 DEBUG Processing 262/456 atomic regions from SNP 78317 to 78917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:50,984 DEBUG Processing 319/858 atomic regions from SNP 95471 to 96071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,043 DEBUG Processing 122/633 atomic regions from SNP 36318 to 36918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,103 DEBUG Processing 334/834 atomic regions from SNP 99927 to 100527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,106 DEBUG Processing 248/1000 atomic regions from SNP 74184 to 74784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,146 DEBUG Processing 222/1109 atomic regions from SNP 66474 to 67074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,155 DEBUG Processing 263/456 atomic regions from SNP 78617 to 79217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,206 DEBUG Processing 320/858 atomic regions from SNP 95771 to 96371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,263 DEBUG Processing 123/633 atomic regions from SNP 36618 to 37218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,333 DEBUG Processing 335/834 atomic regions from SNP 100227 to 100827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,358 DEBUG Processing 249/1000 atomic regions from SNP 74484 to 75084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,376 DEBUG Processing 264/456 atomic regions from SNP 78917 to 79517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,412 DEBUG Processing 223/1109 atomic regions from SNP 66774 to 67374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,434 DEBUG Processing 321/858 atomic regions from SNP 96071 to 96671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,480 DEBUG Processing 124/633 atomic regions from SNP 36918 to 37518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,561 DEBUG Processing 336/834 atomic regions from SNP 100527 to 101127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,598 DEBUG Processing 265/456 atomic regions from SNP 79217 to 79817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,610 DEBUG Processing 250/1000 atomic regions from SNP 74784 to 75384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,667 DEBUG Processing 322/858 atomic regions from SNP 96371 to 96971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,682 DEBUG Processing 224/1109 atomic regions from SNP 67074 to 67674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,704 DEBUG Processing 125/633 atomic regions from SNP 37218 to 37818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,796 DEBUG Processing 337/834 atomic regions from SNP 100827 to 101427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,829 DEBUG Processing 266/456 atomic regions from SNP 79517 to 80117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:51,874 DEBUG Processing 251/1000 atomic regions from SNP 75084 to 75684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,906 DEBUG Processing 323/858 atomic regions from SNP 96671 to 97271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,934 DEBUG Processing 126/633 atomic regions from SNP 37518 to 38118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:51,959 DEBUG Processing 225/1109 atomic regions from SNP 67374 to 67974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,032 DEBUG Processing 338/834 atomic regions from SNP 101127 to 101727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,058 DEBUG Processing 267/456 atomic regions from SNP 79817 to 80417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,131 DEBUG Processing 252/1000 atomic regions from SNP 75384 to 75984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,185 DEBUG Processing 324/858 atomic regions from SNP 96971 to 97571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,208 DEBUG Processing 127/633 atomic regions from SNP 37818 to 38418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,281 DEBUG Processing 226/1109 atomic regions from SNP 67674 to 68274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,329 DEBUG Processing 339/834 atomic regions from SNP 101427 to 102027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,356 DEBUG Processing 268/456 atomic regions from SNP 80117 to 80717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,485 DEBUG Processing 253/1000 atomic regions from SNP 75684 to 76284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,526 DEBUG Processing 325/858 atomic regions from SNP 97271 to 97871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,528 DEBUG Processing 128/633 atomic regions from SNP 38118 to 38718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,590 DEBUG Processing 227/1109 atomic regions from SNP 67974 to 68574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,674 DEBUG Processing 269/456 atomic regions from SNP 80417 to 81017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,674 DEBUG Processing 340/834 atomic regions from SNP 101727 to 102327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,812 DEBUG Processing 129/633 atomic regions from SNP 38418 to 39018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:52,813 DEBUG Processing 326/858 atomic regions from SNP 97571 to 98171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,816 DEBUG Processing 254/1000 atomic regions from SNP 75984 to 76584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,898 DEBUG Processing 228/1109 atomic regions from SNP 68274 to 68874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,943 DEBUG Processing 270/456 atomic regions from SNP 80717 to 81317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:52,964 DEBUG Processing 341/834 atomic regions from SNP 102027 to 102627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,044 DEBUG Processing 130/633 atomic regions from SNP 38718 to 39318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,051 DEBUG Processing 327/858 atomic regions from SNP 97871 to 98471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,079 DEBUG Processing 255/1000 atomic regions from SNP 76284 to 76884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,169 DEBUG Processing 271/456 atomic regions from SNP 81017 to 81617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:53,171 DEBUG Processing 229/1109 atomic regions from SNP 68574 to 69174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,206 DEBUG Processing 342/834 atomic regions from SNP 102327 to 102927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,268 DEBUG Processing 131/633 atomic regions from SNP 39018 to 39618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,278 DEBUG Processing 328/858 atomic regions from SNP 98171 to 98771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,329 DEBUG Processing 256/1000 atomic regions from SNP 76584 to 77184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,394 DEBUG Processing 272/456 atomic regions from SNP 81317 to 81917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:53,443 DEBUG Processing 230/1109 atomic regions from SNP 68874 to 69474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,462 DEBUG Processing 343/834 atomic regions from SNP 102627 to 103227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,502 DEBUG Processing 132/633 atomic regions from SNP 39318 to 39918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,512 DEBUG Processing 329/858 atomic regions from SNP 98471 to 99071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,583 DEBUG Processing 257/1000 atomic regions from SNP 76884 to 77484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,614 DEBUG Processing 273/456 atomic regions from SNP 81617 to 82217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:53,692 DEBUG Processing 344/834 atomic regions from SNP 102927 to 103527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,727 DEBUG Processing 133/633 atomic regions from SNP 39618 to 40218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,741 DEBUG Processing 231/1109 atomic regions from SNP 69174 to 69774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,744 DEBUG Processing 330/858 atomic regions from SNP 98771 to 99371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,839 DEBUG Processing 258/1000 atomic regions from SNP 77184 to 77784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,841 DEBUG Processing 274/456 atomic regions from SNP 81917 to 82517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:53,926 DEBUG Processing 345/834 atomic regions from SNP 103227 to 103827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,952 DEBUG Processing 134/633 atomic regions from SNP 39918 to 40518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:53,977 DEBUG Processing 331/858 atomic regions from SNP 99071 to 99671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,025 DEBUG Processing 232/1109 atomic regions from SNP 69474 to 70074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,070 DEBUG Processing 275/456 atomic regions from SNP 82217 to 82817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:54,096 DEBUG Processing 259/1000 atomic regions from SNP 77484 to 78084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,167 DEBUG Processing 346/834 atomic regions from SNP 103527 to 104127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,172 DEBUG Processing 135/633 atomic regions from SNP 40218 to 40818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,209 DEBUG Processing 332/858 atomic regions from SNP 99371 to 99971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,285 DEBUG Processing 233/1109 atomic regions from SNP 69774 to 70374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,295 DEBUG Processing 276/456 atomic regions from SNP 82517 to 83117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:54,354 DEBUG Processing 260/1000 atomic regions from SNP 77784 to 78384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,390 DEBUG Processing 136/633 atomic regions from SNP 40518 to 41118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,408 DEBUG Processing 347/834 atomic regions from SNP 103827 to 104427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,465 DEBUG Processing 333/858 atomic regions from SNP 99671 to 100271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,515 DEBUG Processing 277/456 atomic regions from SNP 82817 to 83417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:54,547 DEBUG Processing 234/1109 atomic regions from SNP 70074 to 70674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,608 DEBUG Processing 137/633 atomic regions from SNP 40818 to 41418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,609 DEBUG Processing 261/1000 atomic regions from SNP 78084 to 78684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,644 DEBUG Processing 348/834 atomic regions from SNP 104127 to 104727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,691 DEBUG Processing 334/858 atomic regions from SNP 99971 to 100571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,739 DEBUG Processing 278/456 atomic regions from SNP 83117 to 83717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:54,812 DEBUG Processing 235/1109 atomic regions from SNP 70374 to 70974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,826 DEBUG Processing 138/633 atomic regions from SNP 41118 to 41718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:54,863 DEBUG Processing 262/1000 atomic regions from SNP 78384 to 78984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,877 DEBUG Processing 349/834 atomic regions from SNP 104427 to 105027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,914 DEBUG Processing 335/858 atomic regions from SNP 100271 to 100871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,963 DEBUG Processing 279/456 atomic regions from SNP 83417 to 84017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,045 DEBUG Processing 139/633 atomic regions from SNP 41418 to 42018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,073 DEBUG Processing 236/1109 atomic regions from SNP 70674 to 71274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,104 DEBUG Processing 350/834 atomic regions from SNP 104727 to 105327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,114 DEBUG Processing 263/1000 atomic regions from SNP 78684 to 79284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,135 DEBUG Processing 336/858 atomic regions from SNP 100571 to 101171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,180 DEBUG Processing 280/456 atomic regions from SNP 83717 to 84317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,261 DEBUG Processing 140/633 atomic regions from SNP 41718 to 42318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,330 DEBUG Processing 351/834 atomic regions from SNP 105027 to 105627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,330 DEBUG Processing 237/1109 atomic regions from SNP 70974 to 71574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,356 DEBUG Processing 337/858 atomic regions from SNP 100871 to 101471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,364 DEBUG Processing 264/1000 atomic regions from SNP 78984 to 79584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,394 DEBUG Processing 281/456 atomic regions from SNP 84017 to 84617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,470 DEBUG Processing 141/633 atomic regions from SNP 42018 to 42618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,560 DEBUG Processing 352/834 atomic regions from SNP 105327 to 105927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,578 DEBUG Processing 338/858 atomic regions from SNP 101171 to 101771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,585 DEBUG Processing 238/1109 atomic regions from SNP 71274 to 71874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,621 DEBUG Processing 282/456 atomic regions from SNP 84317 to 84917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,622 DEBUG Processing 265/1000 atomic regions from SNP 79284 to 79884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,682 DEBUG Processing 142/633 atomic regions from SNP 42318 to 42918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:55,796 DEBUG Processing 353/834 atomic regions from SNP 105627 to 106227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,811 DEBUG Processing 339/858 atomic regions from SNP 101471 to 102071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,848 DEBUG Processing 283/456 atomic regions from SNP 84617 to 85217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:55,855 DEBUG Processing 239/1109 atomic regions from SNP 71574 to 72174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,879 DEBUG Processing 266/1000 atomic regions from SNP 79584 to 80184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,900 DEBUG Processing 143/633 atomic regions from SNP 42618 to 43218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,035 DEBUG Processing 354/834 atomic regions from SNP 105927 to 106527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,047 DEBUG Processing 340/858 atomic regions from SNP 101771 to 102371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,079 DEBUG Processing 284/456 atomic regions from SNP 84917 to 85517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,126 DEBUG Processing 144/633 atomic regions from SNP 42918 to 43518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,128 DEBUG Processing 240/1109 atomic regions from SNP 71874 to 72474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,137 DEBUG Processing 267/1000 atomic regions from SNP 79884 to 80484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,281 DEBUG Processing 355/834 atomic regions from SNP 106227 to 106827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,282 DEBUG Processing 341/858 atomic regions from SNP 102071 to 102671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,317 DEBUG Processing 285/456 atomic regions from SNP 85217 to 85817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,350 DEBUG Processing 145/633 atomic regions from SNP 43218 to 43818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,395 DEBUG Processing 241/1109 atomic regions from SNP 72174 to 72774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,402 DEBUG Processing 268/1000 atomic regions from SNP 80184 to 80784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,507 DEBUG Processing 342/858 atomic regions from SNP 102371 to 102971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,520 DEBUG Processing 356/834 atomic regions from SNP 106527 to 107127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,549 DEBUG Processing 286/456 atomic regions from SNP 85517 to 86117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,568 DEBUG Processing 146/633 atomic regions from SNP 43518 to 44118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,649 DEBUG Processing 242/1109 atomic regions from SNP 72474 to 73074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,653 DEBUG Processing 269/1000 atomic regions from SNP 80484 to 81084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,727 DEBUG Processing 343/858 atomic regions from SNP 102671 to 103271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,753 DEBUG Processing 357/834 atomic regions from SNP 106827 to 107427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,776 DEBUG Processing 287/456 atomic regions from SNP 85817 to 86417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:56,784 DEBUG Processing 147/633 atomic regions from SNP 43818 to 44418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,902 DEBUG Processing 243/1109 atomic regions from SNP 72774 to 73374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,904 DEBUG Processing 270/1000 atomic regions from SNP 80784 to 81384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,943 DEBUG Processing 344/858 atomic regions from SNP 102971 to 103571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,984 DEBUG Processing 358/834 atomic regions from SNP 107127 to 107727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,999 DEBUG Processing 148/633 atomic regions from SNP 44118 to 44718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:56,999 DEBUG Processing 288/456 atomic regions from SNP 86117 to 86717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:57,154 DEBUG Processing 244/1109 atomic regions from SNP 73074 to 73674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,158 DEBUG Processing 271/1000 atomic regions from SNP 81084 to 81684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,163 DEBUG Processing 345/858 atomic regions from SNP 103271 to 103871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,212 DEBUG Processing 149/633 atomic regions from SNP 44418 to 45018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,221 DEBUG Processing 359/834 atomic regions from SNP 107427 to 108027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,228 DEBUG Processing 289/456 atomic regions from SNP 86417 to 87017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:57,395 DEBUG Processing 346/858 atomic regions from SNP 103571 to 104171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,421 DEBUG Processing 245/1109 atomic regions from SNP 73374 to 73974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,425 DEBUG Processing 272/1000 atomic regions from SNP 81384 to 81984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,438 DEBUG Processing 150/633 atomic regions from SNP 44718 to 45318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,463 DEBUG Processing 290/456 atomic regions from SNP 86717 to 87317 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:57,467 DEBUG Processing 360/834 atomic regions from SNP 107727 to 108327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,674 DEBUG Processing 347/858 atomic regions from SNP 103871 to 104471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,691 DEBUG Processing 151/633 atomic regions from SNP 45018 to 45618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,720 DEBUG Processing 246/1109 atomic regions from SNP 73674 to 74274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,727 DEBUG Processing 273/1000 atomic regions from SNP 81684 to 82284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,731 DEBUG Processing 291/456 atomic regions from SNP 87017 to 87617 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:57,739 DEBUG Processing 361/834 atomic regions from SNP 108027 to 108627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,919 DEBUG Processing 348/858 atomic regions from SNP 104171 to 104771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,931 DEBUG Processing 152/633 atomic regions from SNP 45318 to 45918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:57,985 DEBUG Processing 292/456 atomic regions from SNP 87317 to 87917 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,000 DEBUG Processing 247/1109 atomic regions from SNP 73974 to 74574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,003 DEBUG Processing 362/834 atomic regions from SNP 108327 to 108927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,010 DEBUG Processing 274/1000 atomic regions from SNP 81984 to 82584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,150 DEBUG Processing 349/858 atomic regions from SNP 104471 to 105071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,153 DEBUG Processing 153/633 atomic regions from SNP 45618 to 46218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,224 DEBUG Processing 293/456 atomic regions from SNP 87617 to 88217 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,252 DEBUG Processing 363/834 atomic regions from SNP 108627 to 109227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,273 DEBUG Processing 248/1109 atomic regions from SNP 74274 to 74874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,287 DEBUG Processing 275/1000 atomic regions from SNP 82284 to 82884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,384 DEBUG Processing 154/633 atomic regions from SNP 45918 to 46518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,391 DEBUG Processing 350/858 atomic regions from SNP 104771 to 105371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,464 DEBUG Processing 294/456 atomic regions from SNP 87917 to 88517 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,505 DEBUG Processing 364/834 atomic regions from SNP 108927 to 109527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,549 DEBUG Processing 249/1109 atomic regions from SNP 74574 to 75174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,567 DEBUG Processing 276/1000 atomic regions from SNP 82584 to 83184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,605 DEBUG Processing 155/633 atomic regions from SNP 46218 to 46818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,630 DEBUG Processing 351/858 atomic regions from SNP 105071 to 105671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,694 DEBUG Processing 295/456 atomic regions from SNP 88217 to 88817 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,742 DEBUG Processing 365/834 atomic regions from SNP 109227 to 109827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,808 DEBUG Processing 250/1109 atomic regions from SNP 74874 to 75474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,822 DEBUG Processing 156/633 atomic regions from SNP 46518 to 47118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:58,827 DEBUG Processing 277/1000 atomic regions from SNP 82884 to 83484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,857 DEBUG Processing 352/858 atomic regions from SNP 105371 to 105971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,928 DEBUG Processing 296/456 atomic regions from SNP 88517 to 89117 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:58,983 DEBUG Processing 366/834 atomic regions from SNP 109527 to 110127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,043 DEBUG Processing 157/633 atomic regions from SNP 46818 to 47418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,071 DEBUG Processing 251/1109 atomic regions from SNP 75174 to 75774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,089 DEBUG Processing 278/1000 atomic regions from SNP 83184 to 83784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,161 DEBUG Processing 297/456 atomic regions from SNP 88817 to 89417 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:59,236 DEBUG Processing 367/834 atomic regions from SNP 109827 to 110427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,264 DEBUG Processing 158/633 atomic regions from SNP 47118 to 47718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,333 DEBUG Processing 252/1109 atomic regions from SNP 75474 to 76074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,356 DEBUG Processing 279/1000 atomic regions from SNP 83484 to 84084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,403 DEBUG Processing 298/456 atomic regions from SNP 89117 to 89717 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:59,485 DEBUG Processing 159/633 atomic regions from SNP 47418 to 48018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,489 DEBUG Processing 368/834 atomic regions from SNP 110127 to 110727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,630 DEBUG Processing 253/1109 atomic regions from SNP 75774 to 76374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,695 DEBUG Processing 280/1000 atomic regions from SNP 83784 to 84384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,754 DEBUG Processing 299/456 atomic regions from SNP 89417 to 90017 for chrX (subchromosome 4 of 5). 2025-01-31 09:41:59,840 DEBUG Processing 160/633 atomic regions from SNP 47718 to 48318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:41:59,849 DEBUG Processing 369/834 atomic regions from SNP 110427 to 111027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,865 DEBUG Processing 353/858 atomic regions from SNP 105671 to 106271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,938 DEBUG Processing 254/1109 atomic regions from SNP 76074 to 76674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,985 DEBUG Processing 281/1000 atomic regions from SNP 84084 to 84684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,037 DEBUG Processing 300/456 atomic regions from SNP 89717 to 90317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:00,093 DEBUG Processing 161/633 atomic regions from SNP 48018 to 48618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,102 DEBUG Processing 354/858 atomic regions from SNP 105971 to 106571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,120 DEBUG Processing 370/834 atomic regions from SNP 110727 to 111327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,209 DEBUG Processing 255/1109 atomic regions from SNP 76374 to 76974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,251 DEBUG Processing 282/1000 atomic regions from SNP 84384 to 84984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,269 DEBUG Processing 301/456 atomic regions from SNP 90017 to 90617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:00,318 DEBUG Processing 162/633 atomic regions from SNP 48318 to 48918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,331 DEBUG Processing 355/858 atomic regions from SNP 106271 to 106871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,388 DEBUG Processing 371/834 atomic regions from SNP 111027 to 111627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,507 DEBUG Processing 256/1109 atomic regions from SNP 76674 to 77274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,531 DEBUG Processing 302/456 atomic regions from SNP 90317 to 90917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:00,555 DEBUG Processing 163/633 atomic regions from SNP 48618 to 49218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,559 DEBUG Processing 283/1000 atomic regions from SNP 84684 to 85284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,575 DEBUG Processing 356/858 atomic regions from SNP 106571 to 107171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,634 DEBUG Processing 372/834 atomic regions from SNP 111327 to 111927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,842 DEBUG Processing 303/456 atomic regions from SNP 90617 to 91217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:00,847 DEBUG Processing 164/633 atomic regions from SNP 48918 to 49518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:00,861 DEBUG Processing 257/1109 atomic regions from SNP 76974 to 77574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,865 DEBUG Processing 357/858 atomic regions from SNP 106871 to 107471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,889 DEBUG Processing 284/1000 atomic regions from SNP 84984 to 85584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,909 DEBUG Processing 373/834 atomic regions from SNP 111627 to 112227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,150 DEBUG Processing 304/456 atomic regions from SNP 90917 to 91517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,152 DEBUG Processing 165/633 atomic regions from SNP 49218 to 49818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,169 DEBUG Processing 358/858 atomic regions from SNP 107171 to 107771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,194 DEBUG Processing 258/1109 atomic regions from SNP 77274 to 77874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,200 DEBUG Processing 285/1000 atomic regions from SNP 85284 to 85884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,212 DEBUG Processing 374/834 atomic regions from SNP 111927 to 112527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,377 DEBUG Processing 166/633 atomic regions from SNP 49518 to 50118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,400 DEBUG Processing 305/456 atomic regions from SNP 91217 to 91817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,409 DEBUG Processing 359/858 atomic regions from SNP 107471 to 108071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,470 DEBUG Processing 259/1109 atomic regions from SNP 77574 to 78174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,472 DEBUG Processing 375/834 atomic regions from SNP 112227 to 112827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,480 DEBUG Processing 286/1000 atomic regions from SNP 85584 to 86184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,590 DEBUG Processing 167/633 atomic regions from SNP 49818 to 50418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,635 DEBUG Processing 306/456 atomic regions from SNP 91517 to 92117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,636 DEBUG Processing 360/858 atomic regions from SNP 107771 to 108371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,718 DEBUG Processing 376/834 atomic regions from SNP 112527 to 113127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,734 DEBUG Processing 260/1109 atomic regions from SNP 77874 to 78474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,749 DEBUG Processing 287/1000 atomic regions from SNP 85884 to 86484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,805 DEBUG Processing 168/633 atomic regions from SNP 50118 to 50718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:01,863 DEBUG Processing 361/858 atomic regions from SNP 108071 to 108671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,883 DEBUG Processing 307/456 atomic regions from SNP 91817 to 92417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:01,954 DEBUG Processing 377/834 atomic regions from SNP 112827 to 113427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,993 DEBUG Processing 261/1109 atomic regions from SNP 78174 to 78774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,007 DEBUG Processing 288/1000 atomic regions from SNP 86184 to 86784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,018 DEBUG Processing 169/633 atomic regions from SNP 50418 to 51018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,082 DEBUG Processing 362/858 atomic regions from SNP 108371 to 108971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,105 DEBUG Processing 308/456 atomic regions from SNP 92117 to 92717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:02,186 DEBUG Processing 378/834 atomic regions from SNP 113127 to 113727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,231 DEBUG Processing 170/633 atomic regions from SNP 50718 to 51318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,248 DEBUG Processing 262/1109 atomic regions from SNP 78474 to 79074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,260 DEBUG Processing 289/1000 atomic regions from SNP 86484 to 87084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,300 DEBUG Processing 363/858 atomic regions from SNP 108671 to 109271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,331 DEBUG Processing 309/456 atomic regions from SNP 92417 to 93017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:02,424 DEBUG Processing 379/834 atomic regions from SNP 113427 to 114027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,454 DEBUG Processing 171/633 atomic regions from SNP 51018 to 51618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,514 DEBUG Processing 263/1109 atomic regions from SNP 78774 to 79374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,521 DEBUG Processing 290/1000 atomic regions from SNP 86784 to 87384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,528 DEBUG Processing 364/858 atomic regions from SNP 108971 to 109571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,563 DEBUG Processing 310/456 atomic regions from SNP 92717 to 93317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:02,664 DEBUG Processing 380/834 atomic regions from SNP 113727 to 114327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,673 DEBUG Processing 172/633 atomic regions from SNP 51318 to 51918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,760 DEBUG Processing 365/858 atomic regions from SNP 109271 to 109871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,781 DEBUG Processing 264/1109 atomic regions from SNP 79074 to 79674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,784 DEBUG Processing 291/1000 atomic regions from SNP 87084 to 87684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,794 DEBUG Processing 311/456 atomic regions from SNP 93017 to 93617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:02,890 DEBUG Processing 173/633 atomic regions from SNP 51618 to 52218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:02,900 DEBUG Processing 381/834 atomic regions from SNP 114027 to 114627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,985 DEBUG Processing 366/858 atomic regions from SNP 109571 to 110171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,021 DEBUG Processing 312/456 atomic regions from SNP 93317 to 93917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,041 DEBUG Processing 265/1109 atomic regions from SNP 79374 to 79974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,042 DEBUG Processing 292/1000 atomic regions from SNP 87384 to 87984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,105 DEBUG Processing 174/633 atomic regions from SNP 51918 to 52518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,134 DEBUG Processing 382/834 atomic regions from SNP 114327 to 114927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,213 DEBUG Processing 367/858 atomic regions from SNP 109871 to 110471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,251 DEBUG Processing 313/456 atomic regions from SNP 93617 to 94217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,302 DEBUG Processing 293/1000 atomic regions from SNP 87684 to 88284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,306 DEBUG Processing 266/1109 atomic regions from SNP 79674 to 80274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,326 DEBUG Processing 175/633 atomic regions from SNP 52218 to 52818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,365 DEBUG Processing 383/834 atomic regions from SNP 114627 to 115227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,440 DEBUG Processing 368/858 atomic regions from SNP 110171 to 110771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,469 DEBUG Processing 314/456 atomic regions from SNP 93917 to 94517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,545 DEBUG Processing 176/633 atomic regions from SNP 52518 to 53118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,552 DEBUG Processing 294/1000 atomic regions from SNP 87984 to 88584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,570 DEBUG Processing 267/1109 atomic regions from SNP 79974 to 80574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,592 DEBUG Processing 384/834 atomic regions from SNP 114927 to 115527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,667 DEBUG Processing 369/858 atomic regions from SNP 110471 to 111071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,694 DEBUG Processing 315/456 atomic regions from SNP 94217 to 94817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:03,830 DEBUG Processing 177/633 atomic regions from SNP 52818 to 53418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:03,876 DEBUG Processing 295/1000 atomic regions from SNP 88284 to 88884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,899 DEBUG Processing 385/834 atomic regions from SNP 115227 to 115827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,910 DEBUG Processing 268/1109 atomic regions from SNP 80274 to 80874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,932 DEBUG Processing 370/858 atomic regions from SNP 110771 to 111371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,939 DEBUG Processing 316/456 atomic regions from SNP 94517 to 95117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,050 DEBUG Processing 178/633 atomic regions from SNP 53118 to 53718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,138 DEBUG Processing 296/1000 atomic regions from SNP 88584 to 89184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,153 DEBUG Processing 386/834 atomic regions from SNP 115527 to 116127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,173 DEBUG Processing 371/858 atomic regions from SNP 111071 to 111671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,180 DEBUG Processing 269/1109 atomic regions from SNP 80574 to 81174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,188 DEBUG Processing 317/456 atomic regions from SNP 94817 to 95417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,296 DEBUG Processing 179/633 atomic regions from SNP 53418 to 54018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,390 DEBUG Processing 387/834 atomic regions from SNP 115827 to 116427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,399 DEBUG Processing 297/1000 atomic regions from SNP 88884 to 89484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,402 DEBUG Processing 372/858 atomic regions from SNP 111371 to 111971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,415 DEBUG Processing 318/456 atomic regions from SNP 95117 to 95717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,444 DEBUG Processing 270/1109 atomic regions from SNP 80874 to 81474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,524 DEBUG Processing 180/633 atomic regions from SNP 53718 to 54318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,619 DEBUG Processing 388/834 atomic regions from SNP 116127 to 116727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,625 DEBUG Processing 373/858 atomic regions from SNP 111671 to 112271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,632 DEBUG Processing 319/456 atomic regions from SNP 95417 to 96017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,648 DEBUG Processing 298/1000 atomic regions from SNP 89184 to 89784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,708 DEBUG Processing 271/1109 atomic regions from SNP 81174 to 81774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,742 DEBUG Processing 181/633 atomic regions from SNP 54018 to 54618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,844 DEBUG Processing 374/858 atomic regions from SNP 111971 to 112571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,844 DEBUG Processing 389/834 atomic regions from SNP 116427 to 117027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,848 DEBUG Processing 320/456 atomic regions from SNP 95717 to 96317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:04,897 DEBUG Processing 299/1000 atomic regions from SNP 89484 to 90084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,961 DEBUG Processing 182/633 atomic regions from SNP 54318 to 54918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:04,969 DEBUG Processing 272/1109 atomic regions from SNP 81474 to 82074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,068 DEBUG Processing 375/858 atomic regions from SNP 112271 to 112871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,069 DEBUG Processing 321/456 atomic regions from SNP 96017 to 96617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,077 DEBUG Processing 390/834 atomic regions from SNP 116727 to 117327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,145 DEBUG Processing 300/1000 atomic regions from SNP 89784 to 90384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,178 DEBUG Processing 183/633 atomic regions from SNP 54618 to 55218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,231 DEBUG Processing 273/1109 atomic regions from SNP 81774 to 82374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,289 DEBUG Processing 376/858 atomic regions from SNP 112571 to 113171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,291 DEBUG Processing 322/456 atomic regions from SNP 96317 to 96917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,308 DEBUG Processing 391/834 atomic regions from SNP 117027 to 117627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,393 DEBUG Processing 301/1000 atomic regions from SNP 90084 to 90684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,395 DEBUG Processing 184/633 atomic regions from SNP 54918 to 55518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,512 DEBUG Processing 377/858 atomic regions from SNP 112871 to 113471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,513 DEBUG Processing 323/456 atomic regions from SNP 96617 to 97217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,513 DEBUG Processing 274/1109 atomic regions from SNP 82074 to 82674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,538 DEBUG Processing 392/834 atomic regions from SNP 117327 to 117927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,611 DEBUG Processing 185/633 atomic regions from SNP 55218 to 55818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,643 DEBUG Processing 302/1000 atomic regions from SNP 90384 to 90984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,730 DEBUG Processing 324/456 atomic regions from SNP 96917 to 97517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,735 DEBUG Processing 378/858 atomic regions from SNP 113171 to 113771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,764 DEBUG Processing 393/834 atomic regions from SNP 117627 to 118227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,799 DEBUG Processing 275/1109 atomic regions from SNP 82374 to 82974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,831 DEBUG Processing 186/633 atomic regions from SNP 55518 to 56118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:05,892 DEBUG Processing 303/1000 atomic regions from SNP 90684 to 91284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,951 DEBUG Processing 325/456 atomic regions from SNP 97217 to 97817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:05,958 DEBUG Processing 379/858 atomic regions from SNP 113471 to 114071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,993 DEBUG Processing 394/834 atomic regions from SNP 117927 to 118527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,057 DEBUG Processing 187/633 atomic regions from SNP 55818 to 56418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,070 DEBUG Processing 276/1109 atomic regions from SNP 82674 to 83274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,143 DEBUG Processing 304/1000 atomic regions from SNP 90984 to 91584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,171 DEBUG Processing 326/456 atomic regions from SNP 97517 to 98117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,179 DEBUG Processing 380/858 atomic regions from SNP 113771 to 114371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,220 DEBUG Processing 395/834 atomic regions from SNP 118227 to 118827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,278 DEBUG Processing 188/633 atomic regions from SNP 56118 to 56718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,333 DEBUG Processing 277/1109 atomic regions from SNP 82974 to 83574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,396 DEBUG Processing 327/456 atomic regions from SNP 97817 to 98417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,397 DEBUG Processing 305/1000 atomic regions from SNP 91284 to 91884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,402 DEBUG Processing 381/858 atomic regions from SNP 114071 to 114671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,448 DEBUG Processing 396/834 atomic regions from SNP 118527 to 119127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,497 DEBUG Processing 189/633 atomic regions from SNP 56418 to 57018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,594 DEBUG Processing 278/1109 atomic regions from SNP 83274 to 83874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,622 DEBUG Processing 328/456 atomic regions from SNP 98117 to 98717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,627 DEBUG Processing 382/858 atomic regions from SNP 114371 to 114971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,654 DEBUG Processing 306/1000 atomic regions from SNP 91584 to 92184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,680 DEBUG Processing 397/834 atomic regions from SNP 118827 to 119427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,720 DEBUG Processing 190/633 atomic regions from SNP 56718 to 57318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:06,846 DEBUG Processing 329/456 atomic regions from SNP 98417 to 99017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:06,853 DEBUG Processing 383/858 atomic regions from SNP 114671 to 115271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,854 DEBUG Processing 279/1109 atomic regions from SNP 83574 to 84174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,907 DEBUG Processing 307/1000 atomic regions from SNP 91884 to 92484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,909 DEBUG Processing 398/834 atomic regions from SNP 119127 to 119727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,940 DEBUG Processing 191/633 atomic regions from SNP 57018 to 57618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,062 DEBUG Processing 330/456 atomic regions from SNP 98717 to 99317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,076 DEBUG Processing 384/858 atomic regions from SNP 114971 to 115571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,110 DEBUG Processing 280/1109 atomic regions from SNP 83874 to 84474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,132 DEBUG Processing 399/834 atomic regions from SNP 119427 to 120027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,153 DEBUG Processing 308/1000 atomic regions from SNP 92184 to 92784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,157 DEBUG Processing 192/633 atomic regions from SNP 57318 to 57918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,273 DEBUG Processing 331/456 atomic regions from SNP 99017 to 99617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,295 DEBUG Processing 385/858 atomic regions from SNP 115271 to 115871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,350 DEBUG Processing 400/834 atomic regions from SNP 119727 to 120327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,362 DEBUG Processing 281/1109 atomic regions from SNP 84174 to 84774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,372 DEBUG Processing 193/633 atomic regions from SNP 57618 to 58218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,396 DEBUG Processing 309/1000 atomic regions from SNP 92484 to 93084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,484 DEBUG Processing 332/456 atomic regions from SNP 99317 to 99917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,514 DEBUG Processing 386/858 atomic regions from SNP 115571 to 116171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,571 DEBUG Processing 401/834 atomic regions from SNP 120027 to 120627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,588 DEBUG Processing 194/633 atomic regions from SNP 57918 to 58518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,619 DEBUG Processing 282/1109 atomic regions from SNP 84474 to 85074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,641 DEBUG Processing 310/1000 atomic regions from SNP 92784 to 93384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,703 DEBUG Processing 333/456 atomic regions from SNP 99617 to 100217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,737 DEBUG Processing 387/858 atomic regions from SNP 115871 to 116471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,795 DEBUG Processing 402/834 atomic regions from SNP 120327 to 120927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,807 DEBUG Processing 195/633 atomic regions from SNP 58218 to 58818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:07,880 DEBUG Processing 283/1109 atomic regions from SNP 84774 to 85374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,891 DEBUG Processing 311/1000 atomic regions from SNP 93084 to 93684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,924 DEBUG Processing 334/456 atomic regions from SNP 99917 to 100517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:07,966 DEBUG Processing 388/858 atomic regions from SNP 116171 to 116771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,020 DEBUG Processing 403/834 atomic regions from SNP 120627 to 121227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,029 DEBUG Processing 196/633 atomic regions from SNP 58518 to 59118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,135 DEBUG Processing 284/1109 atomic regions from SNP 85074 to 85674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,136 DEBUG Processing 312/1000 atomic regions from SNP 93384 to 93984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,141 DEBUG Processing 335/456 atomic regions from SNP 100217 to 100817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:08,192 DEBUG Processing 389/858 atomic regions from SNP 116471 to 117071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,240 DEBUG Processing 404/834 atomic regions from SNP 120927 to 121527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,246 DEBUG Processing 197/633 atomic regions from SNP 58818 to 59418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,354 DEBUG Processing 336/456 atomic regions from SNP 100517 to 101117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:08,382 DEBUG Processing 285/1109 atomic regions from SNP 85374 to 85974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,388 DEBUG Processing 313/1000 atomic regions from SNP 93684 to 94284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,414 DEBUG Processing 390/858 atomic regions from SNP 116771 to 117371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,463 DEBUG Processing 405/834 atomic regions from SNP 121227 to 121827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,467 DEBUG Processing 198/633 atomic regions from SNP 59118 to 59718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,568 DEBUG Processing 337/456 atomic regions from SNP 100817 to 101417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:08,636 DEBUG Processing 314/1000 atomic regions from SNP 93984 to 94584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,636 DEBUG Processing 286/1109 atomic regions from SNP 85674 to 86274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,637 DEBUG Processing 391/858 atomic regions from SNP 117071 to 117671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,683 DEBUG Processing 199/633 atomic regions from SNP 59418 to 60018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,687 DEBUG Processing 406/834 atomic regions from SNP 121527 to 122127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,779 DEBUG Processing 338/456 atomic regions from SNP 101117 to 101717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:08,854 DEBUG Processing 392/858 atomic regions from SNP 117371 to 117971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,881 DEBUG Processing 315/1000 atomic regions from SNP 94284 to 94884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,887 DEBUG Processing 287/1109 atomic regions from SNP 85974 to 86574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,897 DEBUG Processing 200/633 atomic regions from SNP 59718 to 60318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:08,913 DEBUG Processing 407/834 atomic regions from SNP 121827 to 122427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,991 DEBUG Processing 339/456 atomic regions from SNP 101417 to 102017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,075 DEBUG Processing 393/858 atomic regions from SNP 117671 to 118271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,115 DEBUG Processing 201/633 atomic regions from SNP 60018 to 60618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,128 DEBUG Processing 316/1000 atomic regions from SNP 94584 to 95184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,135 DEBUG Processing 408/834 atomic regions from SNP 122127 to 122727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,144 DEBUG Processing 288/1109 atomic regions from SNP 86274 to 86874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,202 DEBUG Processing 340/456 atomic regions from SNP 101717 to 102317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,289 DEBUG Processing 394/858 atomic regions from SNP 117971 to 118571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,334 DEBUG Processing 202/633 atomic regions from SNP 60318 to 60918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,356 DEBUG Processing 409/834 atomic regions from SNP 122427 to 123027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,375 DEBUG Processing 317/1000 atomic regions from SNP 94884 to 95484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,397 DEBUG Processing 289/1109 atomic regions from SNP 86574 to 87174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,416 DEBUG Processing 341/456 atomic regions from SNP 102017 to 102617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,501 DEBUG Processing 395/858 atomic regions from SNP 118271 to 118871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,545 DEBUG Processing 203/633 atomic regions from SNP 60618 to 61218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,585 DEBUG Processing 410/834 atomic regions from SNP 122727 to 123327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,624 DEBUG Processing 318/1000 atomic regions from SNP 95184 to 95784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,628 DEBUG Processing 342/456 atomic regions from SNP 102317 to 102917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,646 DEBUG Processing 290/1109 atomic regions from SNP 86874 to 87474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,710 DEBUG Processing 396/858 atomic regions from SNP 118571 to 119171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,750 DEBUG Processing 204/633 atomic regions from SNP 60918 to 61518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:09,808 DEBUG Processing 411/834 atomic regions from SNP 123027 to 123627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,845 DEBUG Processing 343/456 atomic regions from SNP 102617 to 103217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:09,870 DEBUG Processing 319/1000 atomic regions from SNP 95484 to 96084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,895 DEBUG Processing 291/1109 atomic regions from SNP 87174 to 87774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,926 DEBUG Processing 397/858 atomic regions from SNP 118871 to 119471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,960 DEBUG Processing 205/633 atomic regions from SNP 61218 to 61818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,037 DEBUG Processing 412/834 atomic regions from SNP 123327 to 123927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,066 DEBUG Processing 344/456 atomic regions from SNP 102917 to 103517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,125 DEBUG Processing 320/1000 atomic regions from SNP 95784 to 96384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,145 DEBUG Processing 398/858 atomic regions from SNP 119171 to 119771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,166 DEBUG Processing 292/1109 atomic regions from SNP 87474 to 88074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,169 DEBUG Processing 206/633 atomic regions from SNP 61518 to 62118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,261 DEBUG Processing 413/834 atomic regions from SNP 123627 to 124227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,284 DEBUG Processing 345/456 atomic regions from SNP 103217 to 103817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,365 DEBUG Processing 399/858 atomic regions from SNP 119471 to 120071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,372 DEBUG Processing 321/1000 atomic regions from SNP 96084 to 96684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,383 DEBUG Processing 207/633 atomic regions from SNP 61818 to 62418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,421 DEBUG Processing 293/1109 atomic regions from SNP 87774 to 88374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,487 DEBUG Processing 414/834 atomic regions from SNP 123927 to 124527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,513 DEBUG Processing 346/456 atomic regions from SNP 103517 to 104117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,587 DEBUG Processing 400/858 atomic regions from SNP 119771 to 120371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,598 DEBUG Processing 208/633 atomic regions from SNP 62118 to 62718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,622 DEBUG Processing 322/1000 atomic regions from SNP 96384 to 96984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,674 DEBUG Processing 294/1109 atomic regions from SNP 88074 to 88674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,705 DEBUG Processing 415/834 atomic regions from SNP 124227 to 124827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,752 DEBUG Processing 347/456 atomic regions from SNP 103817 to 104417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:10,804 DEBUG Processing 401/858 atomic regions from SNP 120071 to 120671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,811 DEBUG Processing 209/633 atomic regions from SNP 62418 to 63018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:10,874 DEBUG Processing 323/1000 atomic regions from SNP 96684 to 97284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,923 DEBUG Processing 295/1109 atomic regions from SNP 88374 to 88974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,927 DEBUG Processing 416/834 atomic regions from SNP 124527 to 125127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,967 DEBUG Processing 348/456 atomic regions from SNP 104117 to 104717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,022 DEBUG Processing 402/858 atomic regions from SNP 120371 to 120971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,023 DEBUG Processing 210/633 atomic regions from SNP 62718 to 63318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,125 DEBUG Processing 324/1000 atomic regions from SNP 96984 to 97584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,154 DEBUG Processing 417/834 atomic regions from SNP 124827 to 125427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,175 DEBUG Processing 296/1109 atomic regions from SNP 88674 to 89274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,184 DEBUG Processing 349/456 atomic regions from SNP 104417 to 105017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,233 DEBUG Processing 211/633 atomic regions from SNP 63018 to 63618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,241 DEBUG Processing 403/858 atomic regions from SNP 120671 to 121271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,383 DEBUG Processing 325/1000 atomic regions from SNP 97284 to 97884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,383 DEBUG Processing 418/834 atomic regions from SNP 125127 to 125727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,404 DEBUG Processing 350/456 atomic regions from SNP 104717 to 105317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,425 DEBUG Processing 297/1109 atomic regions from SNP 88974 to 89574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,442 DEBUG Processing 212/633 atomic regions from SNP 63318 to 63918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,455 DEBUG Processing 404/858 atomic regions from SNP 120971 to 121571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,611 DEBUG Processing 419/834 atomic regions from SNP 125427 to 126027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,636 DEBUG Processing 326/1000 atomic regions from SNP 97584 to 98184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,644 DEBUG Processing 351/456 atomic regions from SNP 105017 to 105617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,656 DEBUG Processing 213/633 atomic regions from SNP 63618 to 64218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,673 DEBUG Processing 405/858 atomic regions from SNP 121271 to 121871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,676 DEBUG Processing 298/1109 atomic regions from SNP 89274 to 89874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,837 DEBUG Processing 420/834 atomic regions from SNP 125727 to 126327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,869 DEBUG Processing 214/633 atomic regions from SNP 63918 to 64518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,886 DEBUG Processing 352/456 atomic regions from SNP 105317 to 105917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:11,888 DEBUG Processing 327/1000 atomic regions from SNP 97884 to 98484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,893 DEBUG Processing 406/858 atomic regions from SNP 121571 to 122171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,930 DEBUG Processing 299/1109 atomic regions from SNP 89574 to 90174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,064 DEBUG Processing 421/834 atomic regions from SNP 126027 to 126627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,083 DEBUG Processing 215/633 atomic regions from SNP 64218 to 64818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,107 DEBUG Processing 353/456 atomic regions from SNP 105617 to 106217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,135 DEBUG Processing 407/858 atomic regions from SNP 121871 to 122471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,139 DEBUG Processing 328/1000 atomic regions from SNP 98184 to 98784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,178 DEBUG Processing 300/1109 atomic regions from SNP 89874 to 90474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,283 DEBUG Processing 422/834 atomic regions from SNP 126327 to 126927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,296 DEBUG Processing 216/633 atomic regions from SNP 64518 to 65118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,323 DEBUG Processing 354/456 atomic regions from SNP 105917 to 106517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,352 DEBUG Processing 408/858 atomic regions from SNP 122171 to 122771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,388 DEBUG Processing 329/1000 atomic regions from SNP 98484 to 99084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,426 DEBUG Processing 301/1109 atomic regions from SNP 90174 to 90774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,512 DEBUG Processing 423/834 atomic regions from SNP 126627 to 127227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,512 DEBUG Processing 217/633 atomic regions from SNP 64818 to 65418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,543 DEBUG Processing 355/456 atomic regions from SNP 106217 to 106817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,571 DEBUG Processing 409/858 atomic regions from SNP 122471 to 123071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,635 DEBUG Processing 330/1000 atomic regions from SNP 98784 to 99384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,672 DEBUG Processing 302/1109 atomic regions from SNP 90474 to 91074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,725 DEBUG Processing 218/633 atomic regions from SNP 65118 to 65718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,741 DEBUG Processing 424/834 atomic regions from SNP 126927 to 127527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,763 DEBUG Processing 356/456 atomic regions from SNP 106517 to 107117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:12,791 DEBUG Processing 410/858 atomic regions from SNP 122771 to 123371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,883 DEBUG Processing 331/1000 atomic regions from SNP 99084 to 99684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,923 DEBUG Processing 303/1109 atomic regions from SNP 90774 to 91374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,940 DEBUG Processing 219/633 atomic regions from SNP 65418 to 66018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,977 DEBUG Processing 425/834 atomic regions from SNP 127227 to 127827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,989 DEBUG Processing 357/456 atomic regions from SNP 106817 to 107417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,012 DEBUG Processing 411/858 atomic regions from SNP 123071 to 123671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,133 DEBUG Processing 332/1000 atomic regions from SNP 99384 to 99984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,157 DEBUG Processing 220/633 atomic regions from SNP 65718 to 66318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,179 DEBUG Processing 304/1109 atomic regions from SNP 91074 to 91674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,204 DEBUG Processing 426/834 atomic regions from SNP 127527 to 128127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,221 DEBUG Processing 358/456 atomic regions from SNP 107117 to 107717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,232 DEBUG Processing 412/858 atomic regions from SNP 123371 to 123971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,371 DEBUG Processing 221/633 atomic regions from SNP 66018 to 66618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,382 DEBUG Processing 333/1000 atomic regions from SNP 99684 to 100284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,435 DEBUG Processing 427/834 atomic regions from SNP 127827 to 128427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,437 DEBUG Processing 305/1109 atomic regions from SNP 91374 to 91974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,457 DEBUG Processing 413/858 atomic regions from SNP 123671 to 124271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,477 DEBUG Processing 359/456 atomic regions from SNP 107417 to 108017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,583 DEBUG Processing 222/633 atomic regions from SNP 66318 to 66918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,628 DEBUG Processing 334/1000 atomic regions from SNP 99984 to 100584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,654 DEBUG Processing 428/834 atomic regions from SNP 128127 to 128727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,675 DEBUG Processing 414/858 atomic regions from SNP 123971 to 124571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,689 DEBUG Processing 306/1109 atomic regions from SNP 91674 to 92274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,707 DEBUG Processing 360/456 atomic regions from SNP 107717 to 108317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,798 DEBUG Processing 223/633 atomic regions from SNP 66618 to 67218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,878 DEBUG Processing 335/1000 atomic regions from SNP 100284 to 100884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,880 DEBUG Processing 429/834 atomic regions from SNP 128427 to 129027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,892 DEBUG Processing 415/858 atomic regions from SNP 124271 to 124871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,922 DEBUG Processing 361/456 atomic regions from SNP 108017 to 108617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:13,940 DEBUG Processing 307/1109 atomic regions from SNP 91974 to 92574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,012 DEBUG Processing 224/633 atomic regions from SNP 66918 to 67518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,109 DEBUG Processing 430/834 atomic regions from SNP 128727 to 129327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,111 DEBUG Processing 416/858 atomic regions from SNP 124571 to 125171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,130 DEBUG Processing 336/1000 atomic regions from SNP 100584 to 101184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,137 DEBUG Processing 362/456 atomic regions from SNP 108317 to 108917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,192 DEBUG Processing 308/1109 atomic regions from SNP 92274 to 92874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,227 DEBUG Processing 225/633 atomic regions from SNP 67218 to 67818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,332 DEBUG Processing 417/858 atomic regions from SNP 124871 to 125471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,350 DEBUG Processing 431/834 atomic regions from SNP 129027 to 129627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,368 DEBUG Processing 363/456 atomic regions from SNP 108617 to 109217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,391 DEBUG Processing 337/1000 atomic regions from SNP 100884 to 101484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,447 DEBUG Processing 226/633 atomic regions from SNP 67518 to 68118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,455 DEBUG Processing 309/1109 atomic regions from SNP 92574 to 93174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,555 DEBUG Processing 418/858 atomic regions from SNP 125171 to 125771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,592 DEBUG Processing 432/834 atomic regions from SNP 129327 to 129927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,606 DEBUG Processing 364/456 atomic regions from SNP 108917 to 109517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,654 DEBUG Processing 338/1000 atomic regions from SNP 101184 to 101784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,671 DEBUG Processing 227/633 atomic regions from SNP 67818 to 68418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,718 DEBUG Processing 310/1109 atomic regions from SNP 92874 to 93474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,774 DEBUG Processing 419/858 atomic regions from SNP 125471 to 126071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,824 DEBUG Processing 433/834 atomic regions from SNP 129627 to 130227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,830 DEBUG Processing 365/456 atomic regions from SNP 109217 to 109817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:14,888 DEBUG Processing 228/633 atomic regions from SNP 68118 to 68718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,906 DEBUG Processing 339/1000 atomic regions from SNP 101484 to 102084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,980 DEBUG Processing 311/1109 atomic regions from SNP 93174 to 93774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,994 DEBUG Processing 420/858 atomic regions from SNP 125771 to 126371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,053 DEBUG Processing 366/456 atomic regions from SNP 109517 to 110117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,055 DEBUG Processing 434/834 atomic regions from SNP 129927 to 130527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,105 DEBUG Processing 229/633 atomic regions from SNP 68418 to 69018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,162 DEBUG Processing 340/1000 atomic regions from SNP 101784 to 102384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,214 DEBUG Processing 421/858 atomic regions from SNP 126071 to 126671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,253 DEBUG Processing 312/1109 atomic regions from SNP 93474 to 94074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,269 DEBUG Processing 367/456 atomic regions from SNP 109817 to 110417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,287 DEBUG Processing 435/834 atomic regions from SNP 130227 to 130827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,336 DEBUG Processing 230/633 atomic regions from SNP 68718 to 69318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,468 DEBUG Processing 341/1000 atomic regions from SNP 102084 to 102684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,473 DEBUG Processing 422/858 atomic regions from SNP 126371 to 126971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,529 DEBUG Processing 368/456 atomic regions from SNP 110117 to 110717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,543 DEBUG Processing 436/834 atomic regions from SNP 130527 to 131127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,572 DEBUG Processing 313/1109 atomic regions from SNP 93774 to 94374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,588 DEBUG Processing 231/633 atomic regions from SNP 69018 to 69618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,769 DEBUG Processing 423/858 atomic regions from SNP 126671 to 127271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,775 DEBUG Processing 342/1000 atomic regions from SNP 102384 to 102984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,838 DEBUG Processing 369/456 atomic regions from SNP 110417 to 111017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:15,865 DEBUG Processing 437/834 atomic regions from SNP 130827 to 131427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,887 DEBUG Processing 232/633 atomic regions from SNP 69318 to 69918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,923 DEBUG Processing 314/1109 atomic regions from SNP 94074 to 94674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,991 DEBUG Processing 424/858 atomic regions from SNP 126971 to 127571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,030 DEBUG Processing 343/1000 atomic regions from SNP 102684 to 103284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,070 DEBUG Processing 370/456 atomic regions from SNP 110717 to 111317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,099 DEBUG Processing 438/834 atomic regions from SNP 131127 to 131727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,112 DEBUG Processing 233/633 atomic regions from SNP 69618 to 70218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,183 DEBUG Processing 315/1109 atomic regions from SNP 94374 to 94974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,207 DEBUG Processing 425/858 atomic regions from SNP 127271 to 127871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,278 DEBUG Processing 344/1000 atomic regions from SNP 102984 to 103584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,293 DEBUG Processing 371/456 atomic regions from SNP 111017 to 111617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,327 DEBUG Processing 439/834 atomic regions from SNP 131427 to 132027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,329 DEBUG Processing 234/633 atomic regions from SNP 69918 to 70518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,423 DEBUG Processing 426/858 atomic regions from SNP 127571 to 128171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,446 DEBUG Processing 316/1109 atomic regions from SNP 94674 to 95274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,515 DEBUG Processing 372/456 atomic regions from SNP 111317 to 111917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,530 DEBUG Processing 345/1000 atomic regions from SNP 103284 to 103884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,544 DEBUG Processing 235/633 atomic regions from SNP 70218 to 70818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,558 DEBUG Processing 440/834 atomic regions from SNP 131727 to 132327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,640 DEBUG Processing 427/858 atomic regions from SNP 127871 to 128471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,714 DEBUG Processing 317/1109 atomic regions from SNP 94974 to 95574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,748 DEBUG Processing 373/456 atomic regions from SNP 111617 to 112217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,763 DEBUG Processing 236/633 atomic regions from SNP 70518 to 71118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,778 DEBUG Processing 346/1000 atomic regions from SNP 103584 to 104184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,785 DEBUG Processing 441/834 atomic regions from SNP 132027 to 132627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,855 DEBUG Processing 428/858 atomic regions from SNP 128171 to 128771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,967 DEBUG Processing 374/456 atomic regions from SNP 111917 to 112517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:16,982 DEBUG Processing 318/1109 atomic regions from SNP 95274 to 95874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,982 DEBUG Processing 237/633 atomic regions from SNP 70818 to 71418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,011 DEBUG Processing 442/834 atomic regions from SNP 132327 to 132927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,026 DEBUG Processing 347/1000 atomic regions from SNP 103884 to 104484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,072 DEBUG Processing 429/858 atomic regions from SNP 128471 to 129071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,180 DEBUG Processing 375/456 atomic regions from SNP 112217 to 112817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,206 DEBUG Processing 238/633 atomic regions from SNP 71118 to 71718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,235 DEBUG Processing 443/834 atomic regions from SNP 132627 to 133227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,250 DEBUG Processing 319/1109 atomic regions from SNP 95574 to 96174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,275 DEBUG Processing 348/1000 atomic regions from SNP 104184 to 104784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,292 DEBUG Processing 430/858 atomic regions from SNP 128771 to 129371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,400 DEBUG Processing 376/456 atomic regions from SNP 112517 to 113117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,427 DEBUG Processing 239/633 atomic regions from SNP 71418 to 72018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,466 DEBUG Processing 444/834 atomic regions from SNP 132927 to 133527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,515 DEBUG Processing 320/1109 atomic regions from SNP 95874 to 96474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,519 DEBUG Processing 431/858 atomic regions from SNP 129071 to 129671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,530 DEBUG Processing 349/1000 atomic regions from SNP 104484 to 105084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,626 DEBUG Processing 377/456 atomic regions from SNP 112817 to 113417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,644 DEBUG Processing 240/633 atomic regions from SNP 71718 to 72318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,700 DEBUG Processing 445/834 atomic regions from SNP 133227 to 133827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,744 DEBUG Processing 432/858 atomic regions from SNP 129371 to 129971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,776 DEBUG Processing 321/1109 atomic regions from SNP 96174 to 96774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,783 DEBUG Processing 350/1000 atomic regions from SNP 104784 to 105384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,838 DEBUG Processing 378/456 atomic regions from SNP 113117 to 113717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:17,854 DEBUG Processing 241/633 atomic regions from SNP 72018 to 72618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,920 DEBUG Processing 446/834 atomic regions from SNP 133527 to 134127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,981 DEBUG Processing 433/858 atomic regions from SNP 129671 to 130271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,027 DEBUG Processing 351/1000 atomic regions from SNP 105084 to 105684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,042 DEBUG Processing 322/1109 atomic regions from SNP 96474 to 97074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,051 DEBUG Processing 379/456 atomic regions from SNP 113417 to 114017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,070 DEBUG Processing 242/633 atomic regions from SNP 72318 to 72918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,140 DEBUG Processing 447/834 atomic regions from SNP 133827 to 134427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,209 DEBUG Processing 434/858 atomic regions from SNP 129971 to 130571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,269 DEBUG Processing 380/456 atomic regions from SNP 113717 to 114317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,276 DEBUG Processing 352/1000 atomic regions from SNP 105384 to 105984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,289 DEBUG Processing 243/633 atomic regions from SNP 72618 to 73218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,305 DEBUG Processing 323/1109 atomic regions from SNP 96774 to 97374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,367 DEBUG Processing 448/834 atomic regions from SNP 134127 to 134727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,446 DEBUG Processing 435/858 atomic regions from SNP 130271 to 130871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,492 DEBUG Processing 381/456 atomic regions from SNP 114017 to 114617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,516 DEBUG Processing 244/633 atomic regions from SNP 72918 to 73518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,530 DEBUG Processing 353/1000 atomic regions from SNP 105684 to 106284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,572 DEBUG Processing 324/1109 atomic regions from SNP 97074 to 97674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,589 DEBUG Processing 449/834 atomic regions from SNP 134427 to 135027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,674 DEBUG Processing 436/858 atomic regions from SNP 130571 to 131171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,705 DEBUG Processing 382/456 atomic regions from SNP 114317 to 114917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,738 DEBUG Processing 245/633 atomic regions from SNP 73218 to 73818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,772 DEBUG Processing 354/1000 atomic regions from SNP 105984 to 106584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,807 DEBUG Processing 450/834 atomic regions from SNP 134727 to 135327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,831 DEBUG Processing 325/1109 atomic regions from SNP 97374 to 97974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,893 DEBUG Processing 437/858 atomic regions from SNP 130871 to 131471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,917 DEBUG Processing 383/456 atomic regions from SNP 114617 to 115217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:18,956 DEBUG Processing 246/633 atomic regions from SNP 73518 to 74118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,014 DEBUG Processing 355/1000 atomic regions from SNP 106284 to 106884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,024 DEBUG Processing 451/834 atomic regions from SNP 135027 to 135627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,084 DEBUG Processing 326/1109 atomic regions from SNP 97674 to 98274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,112 DEBUG Processing 438/858 atomic regions from SNP 131171 to 131771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,129 DEBUG Processing 384/456 atomic regions from SNP 114917 to 115517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,174 DEBUG Processing 247/633 atomic regions from SNP 73818 to 74418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,242 DEBUG Processing 452/834 atomic regions from SNP 135327 to 135927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,258 DEBUG Processing 356/1000 atomic regions from SNP 106584 to 107184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,332 DEBUG Processing 439/858 atomic regions from SNP 131471 to 132071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,336 DEBUG Processing 327/1109 atomic regions from SNP 97974 to 98574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,341 DEBUG Processing 385/456 atomic regions from SNP 115217 to 115817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,390 DEBUG Processing 248/633 atomic regions from SNP 74118 to 74718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,464 DEBUG Processing 453/834 atomic regions from SNP 135627 to 136227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,503 DEBUG Processing 357/1000 atomic regions from SNP 106884 to 107484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,551 DEBUG Processing 386/456 atomic regions from SNP 115517 to 116117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,554 DEBUG Processing 440/858 atomic regions from SNP 131771 to 132371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,593 DEBUG Processing 328/1109 atomic regions from SNP 98274 to 98874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,606 DEBUG Processing 249/633 atomic regions from SNP 74418 to 75018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,686 DEBUG Processing 454/834 atomic regions from SNP 135927 to 136527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,748 DEBUG Processing 358/1000 atomic regions from SNP 107184 to 107784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,764 DEBUG Processing 387/456 atomic regions from SNP 115817 to 116417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,778 DEBUG Processing 441/858 atomic regions from SNP 132071 to 132671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,821 DEBUG Processing 250/633 atomic regions from SNP 74718 to 75318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,852 DEBUG Processing 329/1109 atomic regions from SNP 98574 to 99174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,908 DEBUG Processing 455/834 atomic regions from SNP 136227 to 136827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,979 DEBUG Processing 388/456 atomic regions from SNP 116117 to 116717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:19,996 DEBUG Processing 359/1000 atomic regions from SNP 107484 to 108084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,999 DEBUG Processing 442/858 atomic regions from SNP 132371 to 132971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,036 DEBUG Processing 251/633 atomic regions from SNP 75018 to 75618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,106 DEBUG Processing 330/1109 atomic regions from SNP 98874 to 99474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,131 DEBUG Processing 456/834 atomic regions from SNP 136527 to 137127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,198 DEBUG Processing 389/456 atomic regions from SNP 116417 to 117017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,235 DEBUG Processing 443/858 atomic regions from SNP 132671 to 133271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,244 DEBUG Processing 360/1000 atomic regions from SNP 107784 to 108384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,252 DEBUG Processing 252/633 atomic regions from SNP 75318 to 75918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,350 DEBUG Processing 457/834 atomic regions from SNP 136827 to 137427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,357 DEBUG Processing 331/1109 atomic regions from SNP 99174 to 99774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,417 DEBUG Processing 390/456 atomic regions from SNP 116717 to 117317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,470 DEBUG Processing 253/633 atomic regions from SNP 75618 to 76218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,475 DEBUG Processing 444/858 atomic regions from SNP 132971 to 133571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,493 DEBUG Processing 361/1000 atomic regions from SNP 108084 to 108684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,572 DEBUG Processing 458/834 atomic regions from SNP 137127 to 137727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,606 DEBUG Processing 332/1109 atomic regions from SNP 99474 to 100074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,633 DEBUG Processing 391/456 atomic regions from SNP 117017 to 117617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,686 DEBUG Processing 254/633 atomic regions from SNP 75918 to 76518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,711 DEBUG Processing 445/858 atomic regions from SNP 133271 to 133871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,739 DEBUG Processing 362/1000 atomic regions from SNP 108384 to 108984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,793 DEBUG Processing 459/834 atomic regions from SNP 137427 to 138027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,849 DEBUG Processing 392/456 atomic regions from SNP 117317 to 117917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:20,857 DEBUG Processing 333/1109 atomic regions from SNP 99774 to 100374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,903 DEBUG Processing 255/633 atomic regions from SNP 76218 to 76818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,944 DEBUG Processing 446/858 atomic regions from SNP 133571 to 134171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,985 DEBUG Processing 363/1000 atomic regions from SNP 108684 to 109284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,024 DEBUG Processing 460/834 atomic regions from SNP 137727 to 138327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,063 DEBUG Processing 393/456 atomic regions from SNP 117617 to 118217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,107 DEBUG Processing 334/1109 atomic regions from SNP 100074 to 100674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,118 DEBUG Processing 256/633 atomic regions from SNP 76518 to 77118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,164 DEBUG Processing 447/858 atomic regions from SNP 133871 to 134471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,231 DEBUG Processing 364/1000 atomic regions from SNP 108984 to 109584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,254 DEBUG Processing 461/834 atomic regions from SNP 138027 to 138627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,286 DEBUG Processing 394/456 atomic regions from SNP 117917 to 118517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,334 DEBUG Processing 257/633 atomic regions from SNP 76818 to 77418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,367 DEBUG Processing 335/1109 atomic regions from SNP 100374 to 100974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,386 DEBUG Processing 448/858 atomic regions from SNP 134171 to 134771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,477 DEBUG Processing 365/1000 atomic regions from SNP 109284 to 109884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,479 DEBUG Processing 462/834 atomic regions from SNP 138327 to 138927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,506 DEBUG Processing 395/456 atomic regions from SNP 118217 to 118817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,550 DEBUG Processing 258/633 atomic regions from SNP 77118 to 77718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,608 DEBUG Processing 449/858 atomic regions from SNP 134471 to 135071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,623 DEBUG Processing 336/1109 atomic regions from SNP 100674 to 101274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,702 DEBUG Processing 463/834 atomic regions from SNP 138627 to 139227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,721 DEBUG Processing 366/1000 atomic regions from SNP 109584 to 110184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,724 DEBUG Processing 396/456 atomic regions from SNP 118517 to 119117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,762 DEBUG Processing 259/633 atomic regions from SNP 77418 to 78018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,827 DEBUG Processing 450/858 atomic regions from SNP 134771 to 135371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,875 DEBUG Processing 337/1109 atomic regions from SNP 100974 to 101574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,921 DEBUG Processing 464/834 atomic regions from SNP 138927 to 139527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,940 DEBUG Processing 397/456 atomic regions from SNP 118817 to 119417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:21,965 DEBUG Processing 367/1000 atomic regions from SNP 109884 to 110484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,974 DEBUG Processing 260/633 atomic regions from SNP 77718 to 78318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,047 DEBUG Processing 451/858 atomic regions from SNP 135071 to 135671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,140 DEBUG Processing 465/834 atomic regions from SNP 139227 to 139827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,148 DEBUG Processing 338/1109 atomic regions from SNP 101274 to 101874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,154 DEBUG Processing 398/456 atomic regions from SNP 119117 to 119717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,186 DEBUG Processing 261/633 atomic regions from SNP 78018 to 78618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,210 DEBUG Processing 368/1000 atomic regions from SNP 110184 to 110784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,263 DEBUG Processing 452/858 atomic regions from SNP 135371 to 135971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,362 DEBUG Processing 466/834 atomic regions from SNP 139527 to 140127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,369 DEBUG Processing 399/456 atomic regions from SNP 119417 to 120017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,401 DEBUG Processing 262/633 atomic regions from SNP 78318 to 78918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,416 DEBUG Processing 339/1109 atomic regions from SNP 101574 to 102174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,454 DEBUG Processing 369/1000 atomic regions from SNP 110484 to 111084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,478 DEBUG Processing 453/858 atomic regions from SNP 135671 to 136271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,584 DEBUG Processing 400/456 atomic regions from SNP 119717 to 120317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,584 DEBUG Processing 467/834 atomic regions from SNP 139827 to 140427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,618 DEBUG Processing 263/633 atomic regions from SNP 78618 to 79218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,688 DEBUG Processing 340/1109 atomic regions from SNP 101874 to 102474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,694 DEBUG Processing 454/858 atomic regions from SNP 135971 to 136571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,695 DEBUG Processing 370/1000 atomic regions from SNP 110784 to 111384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,799 DEBUG Processing 401/456 atomic regions from SNP 120017 to 120617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:22,807 DEBUG Processing 468/834 atomic regions from SNP 140127 to 140727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,830 DEBUG Processing 264/633 atomic regions from SNP 78918 to 79518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,913 DEBUG Processing 455/858 atomic regions from SNP 136271 to 136871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,933 DEBUG Processing 371/1000 atomic regions from SNP 111084 to 111684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,950 DEBUG Processing 341/1109 atomic regions from SNP 102174 to 102774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,017 DEBUG Processing 402/456 atomic regions from SNP 120317 to 120917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,033 DEBUG Processing 469/834 atomic regions from SNP 140427 to 141027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,044 DEBUG Processing 265/633 atomic regions from SNP 79218 to 79818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,158 DEBUG Processing 456/858 atomic regions from SNP 136571 to 137171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,174 DEBUG Processing 372/1000 atomic regions from SNP 111384 to 111984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,202 DEBUG Processing 342/1109 atomic regions from SNP 102474 to 103074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,231 DEBUG Processing 403/456 atomic regions from SNP 120617 to 121217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,255 DEBUG Processing 470/834 atomic regions from SNP 140727 to 141327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,256 DEBUG Processing 266/633 atomic regions from SNP 79518 to 80118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,411 DEBUG Processing 457/858 atomic regions from SNP 136871 to 137471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,419 DEBUG Processing 373/1000 atomic regions from SNP 111684 to 112284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,446 DEBUG Processing 404/456 atomic regions from SNP 120917 to 121517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,453 DEBUG Processing 343/1109 atomic regions from SNP 102774 to 103374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,470 DEBUG Processing 267/633 atomic regions from SNP 79818 to 80418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,476 DEBUG Processing 471/834 atomic regions from SNP 141027 to 141627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,658 DEBUG Processing 405/456 atomic regions from SNP 121217 to 121817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,659 DEBUG Processing 458/858 atomic regions from SNP 137171 to 137771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,660 DEBUG Processing 374/1000 atomic regions from SNP 111984 to 112584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,678 DEBUG Processing 268/633 atomic regions from SNP 80118 to 80718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,693 DEBUG Processing 472/834 atomic regions from SNP 141327 to 141927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,700 DEBUG Processing 344/1109 atomic regions from SNP 103074 to 103674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,872 DEBUG Processing 406/456 atomic regions from SNP 121517 to 122117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:23,888 DEBUG Processing 269/633 atomic regions from SNP 80418 to 81018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,903 DEBUG Processing 375/1000 atomic regions from SNP 112284 to 112884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,910 DEBUG Processing 459/858 atomic regions from SNP 137471 to 138071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,915 DEBUG Processing 473/834 atomic regions from SNP 141627 to 142227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,948 DEBUG Processing 345/1109 atomic regions from SNP 103374 to 103974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,086 DEBUG Processing 407/456 atomic regions from SNP 121817 to 122417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,095 DEBUG Processing 270/633 atomic regions from SNP 80718 to 81318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,138 DEBUG Processing 474/834 atomic regions from SNP 141927 to 142527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,147 DEBUG Processing 376/1000 atomic regions from SNP 112584 to 113184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,163 DEBUG Processing 460/858 atomic regions from SNP 137771 to 138371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,218 DEBUG Processing 346/1109 atomic regions from SNP 103674 to 104274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,300 DEBUG Processing 408/456 atomic regions from SNP 122117 to 122717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,302 DEBUG Processing 271/633 atomic regions from SNP 81018 to 81618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,364 DEBUG Processing 475/834 atomic regions from SNP 142227 to 142827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,397 DEBUG Processing 377/1000 atomic regions from SNP 112884 to 113484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,413 DEBUG Processing 461/858 atomic regions from SNP 138071 to 138671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,480 DEBUG Processing 347/1109 atomic regions from SNP 103974 to 104574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,512 DEBUG Processing 272/633 atomic regions from SNP 81318 to 81918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,517 DEBUG Processing 409/456 atomic regions from SNP 122417 to 123017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,592 DEBUG Processing 476/834 atomic regions from SNP 142527 to 143127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,649 DEBUG Processing 378/1000 atomic regions from SNP 113184 to 113784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,655 DEBUG Processing 462/858 atomic regions from SNP 138371 to 138971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,721 DEBUG Processing 273/633 atomic regions from SNP 81618 to 82218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,730 DEBUG Processing 348/1109 atomic regions from SNP 104274 to 104874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,731 DEBUG Processing 410/456 atomic regions from SNP 122717 to 123317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,811 DEBUG Processing 477/834 atomic regions from SNP 142827 to 143427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,900 DEBUG Processing 379/1000 atomic regions from SNP 113484 to 114084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,903 DEBUG Processing 463/858 atomic regions from SNP 138671 to 139271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,935 DEBUG Processing 274/633 atomic regions from SNP 81918 to 82518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,945 DEBUG Processing 411/456 atomic regions from SNP 123017 to 123617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:24,993 DEBUG Processing 349/1109 atomic regions from SNP 104574 to 105174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,028 DEBUG Processing 478/834 atomic regions from SNP 143127 to 143727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,151 DEBUG Processing 380/1000 atomic regions from SNP 113784 to 114384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,153 DEBUG Processing 275/633 atomic regions from SNP 82218 to 82818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,163 DEBUG Processing 464/858 atomic regions from SNP 138971 to 139571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,165 DEBUG Processing 412/456 atomic regions from SNP 123317 to 123917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,238 DEBUG Processing 479/834 atomic regions from SNP 143427 to 144027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,282 DEBUG Processing 350/1109 atomic regions from SNP 104874 to 105474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,367 DEBUG Processing 276/633 atomic regions from SNP 82518 to 83118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,387 DEBUG Processing 413/456 atomic regions from SNP 123617 to 124217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,401 DEBUG Processing 381/1000 atomic regions from SNP 114084 to 114684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,420 DEBUG Processing 465/858 atomic regions from SNP 139271 to 139871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,453 DEBUG Processing 480/834 atomic regions from SNP 143727 to 144327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,535 DEBUG Processing 351/1109 atomic regions from SNP 105174 to 105774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,577 DEBUG Processing 277/633 atomic regions from SNP 82818 to 83418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,605 DEBUG Processing 414/456 atomic regions from SNP 123917 to 124517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,649 DEBUG Processing 382/1000 atomic regions from SNP 114384 to 114984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,667 DEBUG Processing 466/858 atomic regions from SNP 139571 to 140171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,671 DEBUG Processing 481/834 atomic regions from SNP 144027 to 144627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,784 DEBUG Processing 278/633 atomic regions from SNP 83118 to 83718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,784 DEBUG Processing 352/1109 atomic regions from SNP 105474 to 106074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,823 DEBUG Processing 415/456 atomic regions from SNP 124217 to 124817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:25,893 DEBUG Processing 482/834 atomic regions from SNP 144327 to 144927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,894 DEBUG Processing 467/858 atomic regions from SNP 139871 to 140471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,896 DEBUG Processing 383/1000 atomic regions from SNP 114684 to 115284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,993 DEBUG Processing 279/633 atomic regions from SNP 83418 to 84018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,044 DEBUG Processing 416/456 atomic regions from SNP 124517 to 125117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,074 DEBUG Processing 353/1109 atomic regions from SNP 105774 to 106374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,114 DEBUG Processing 483/834 atomic regions from SNP 144627 to 145227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,129 DEBUG Processing 468/858 atomic regions from SNP 140171 to 140771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,141 DEBUG Processing 384/1000 atomic regions from SNP 114984 to 115584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,198 DEBUG Processing 280/633 atomic regions from SNP 83718 to 84318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,262 DEBUG Processing 417/456 atomic regions from SNP 124817 to 125417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,322 DEBUG Processing 354/1109 atomic regions from SNP 106074 to 106674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,337 DEBUG Processing 484/834 atomic regions from SNP 144927 to 145527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,355 DEBUG Processing 469/858 atomic regions from SNP 140471 to 141071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,387 DEBUG Processing 385/1000 atomic regions from SNP 115284 to 115884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,407 DEBUG Processing 281/633 atomic regions from SNP 84018 to 84618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,479 DEBUG Processing 418/456 atomic regions from SNP 125117 to 125717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,557 DEBUG Processing 485/834 atomic regions from SNP 145227 to 145827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,571 DEBUG Processing 355/1109 atomic regions from SNP 106374 to 106974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,594 DEBUG Processing 470/858 atomic regions from SNP 140771 to 141371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,615 DEBUG Processing 282/633 atomic regions from SNP 84318 to 84918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,641 DEBUG Processing 386/1000 atomic regions from SNP 115584 to 116184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,698 DEBUG Processing 419/456 atomic regions from SNP 125417 to 126017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,777 DEBUG Processing 486/834 atomic regions from SNP 145527 to 146127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,824 DEBUG Processing 356/1109 atomic regions from SNP 106674 to 107274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,826 DEBUG Processing 283/633 atomic regions from SNP 84618 to 85218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,847 DEBUG Processing 471/858 atomic regions from SNP 141071 to 141671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,897 DEBUG Processing 387/1000 atomic regions from SNP 115884 to 116484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,920 DEBUG Processing 420/456 atomic regions from SNP 125717 to 126317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:26,999 DEBUG Processing 487/834 atomic regions from SNP 145827 to 146427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,040 DEBUG Processing 284/633 atomic regions from SNP 84918 to 85518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,077 DEBUG Processing 357/1109 atomic regions from SNP 106974 to 107574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,105 DEBUG Processing 472/858 atomic regions from SNP 141371 to 141971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,138 DEBUG Processing 421/456 atomic regions from SNP 126017 to 126617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,141 DEBUG Processing 388/1000 atomic regions from SNP 116184 to 116784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,235 DEBUG Processing 488/834 atomic regions from SNP 146127 to 146727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,249 DEBUG Processing 285/633 atomic regions from SNP 85218 to 85818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,331 DEBUG Processing 358/1109 atomic regions from SNP 107274 to 107874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,353 DEBUG Processing 422/456 atomic regions from SNP 126317 to 126917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,354 DEBUG Processing 473/858 atomic regions from SNP 141671 to 142271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,386 DEBUG Processing 389/1000 atomic regions from SNP 116484 to 117084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,458 DEBUG Processing 286/633 atomic regions from SNP 85518 to 86118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,466 DEBUG Processing 489/834 atomic regions from SNP 146427 to 147027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,571 DEBUG Processing 423/456 atomic regions from SNP 126617 to 127217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,579 DEBUG Processing 474/858 atomic regions from SNP 141971 to 142571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,589 DEBUG Processing 359/1109 atomic regions from SNP 107574 to 108174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,637 DEBUG Processing 390/1000 atomic regions from SNP 116784 to 117384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,668 DEBUG Processing 287/633 atomic regions from SNP 85818 to 86418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,692 DEBUG Processing 490/834 atomic regions from SNP 146727 to 147327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,792 DEBUG Processing 424/456 atomic regions from SNP 126917 to 127517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:27,806 DEBUG Processing 475/858 atomic regions from SNP 142271 to 142871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,850 DEBUG Processing 360/1109 atomic regions from SNP 107874 to 108474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,880 DEBUG Processing 288/633 atomic regions from SNP 86118 to 86718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,888 DEBUG Processing 391/1000 atomic regions from SNP 117084 to 117684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,913 DEBUG Processing 491/834 atomic regions from SNP 147027 to 147627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,008 DEBUG Processing 425/456 atomic regions from SNP 127217 to 127817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,033 DEBUG Processing 476/858 atomic regions from SNP 142571 to 143171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,098 DEBUG Processing 289/633 atomic regions from SNP 86418 to 87018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,121 DEBUG Processing 361/1109 atomic regions from SNP 108174 to 108774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,136 DEBUG Processing 492/834 atomic regions from SNP 147327 to 147927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,136 DEBUG Processing 392/1000 atomic regions from SNP 117384 to 117984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,218 DEBUG Processing 426/456 atomic regions from SNP 127517 to 128117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,252 DEBUG Processing 477/858 atomic regions from SNP 142871 to 143471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,318 DEBUG Processing 290/633 atomic regions from SNP 86718 to 87318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,358 DEBUG Processing 493/834 atomic regions from SNP 147627 to 148227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,381 DEBUG Processing 393/1000 atomic regions from SNP 117684 to 118284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,388 DEBUG Processing 362/1109 atomic regions from SNP 108474 to 109074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,429 DEBUG Processing 427/456 atomic regions from SNP 127817 to 128417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,470 DEBUG Processing 478/858 atomic regions from SNP 143171 to 143771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,534 DEBUG Processing 291/633 atomic regions from SNP 87018 to 87618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,583 DEBUG Processing 494/834 atomic regions from SNP 147927 to 148527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,626 DEBUG Processing 394/1000 atomic regions from SNP 117984 to 118584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,639 DEBUG Processing 428/456 atomic regions from SNP 128117 to 128717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,642 DEBUG Processing 363/1109 atomic regions from SNP 108774 to 109374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,685 DEBUG Processing 479/858 atomic regions from SNP 143471 to 144071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,748 DEBUG Processing 292/633 atomic regions from SNP 87318 to 87918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,810 DEBUG Processing 495/834 atomic regions from SNP 148227 to 148827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,850 DEBUG Processing 429/456 atomic regions from SNP 128417 to 129017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:28,869 DEBUG Processing 395/1000 atomic regions from SNP 118284 to 118884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,890 DEBUG Processing 364/1109 atomic regions from SNP 109074 to 109674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,901 DEBUG Processing 480/858 atomic regions from SNP 143771 to 144371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,963 DEBUG Processing 293/633 atomic regions from SNP 87618 to 88218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,040 DEBUG Processing 496/834 atomic regions from SNP 148527 to 149127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,068 DEBUG Processing 430/456 atomic regions from SNP 128717 to 129317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,116 DEBUG Processing 481/858 atomic regions from SNP 144071 to 144671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,127 DEBUG Processing 396/1000 atomic regions from SNP 118584 to 119184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,137 DEBUG Processing 365/1109 atomic regions from SNP 109374 to 109974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,174 DEBUG Processing 294/633 atomic regions from SNP 87918 to 88518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,264 DEBUG Processing 497/834 atomic regions from SNP 148827 to 149427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,283 DEBUG Processing 431/456 atomic regions from SNP 129017 to 129617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,333 DEBUG Processing 482/858 atomic regions from SNP 144371 to 144971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,369 DEBUG Processing 397/1000 atomic regions from SNP 118884 to 119484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,386 DEBUG Processing 295/633 atomic regions from SNP 88218 to 88818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,388 DEBUG Processing 366/1109 atomic regions from SNP 109674 to 110274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,487 DEBUG Processing 498/834 atomic regions from SNP 149127 to 149727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,499 DEBUG Processing 432/456 atomic regions from SNP 129317 to 129917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,550 DEBUG Processing 483/858 atomic regions from SNP 144671 to 145271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,599 DEBUG Processing 296/633 atomic regions from SNP 88518 to 89118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,610 DEBUG Processing 398/1000 atomic regions from SNP 119184 to 119784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,643 DEBUG Processing 367/1109 atomic regions from SNP 109974 to 110574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,708 DEBUG Processing 499/834 atomic regions from SNP 149427 to 150027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,710 DEBUG Processing 433/456 atomic regions from SNP 129617 to 130217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,765 DEBUG Processing 484/858 atomic regions from SNP 144971 to 145571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,809 DEBUG Processing 297/633 atomic regions from SNP 88818 to 89418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,850 DEBUG Processing 399/1000 atomic regions from SNP 119484 to 120084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,894 DEBUG Processing 368/1109 atomic regions from SNP 110274 to 110874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,923 DEBUG Processing 434/456 atomic regions from SNP 129917 to 130517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:29,926 DEBUG Processing 500/834 atomic regions from SNP 149727 to 150327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,980 DEBUG Processing 485/858 atomic regions from SNP 145271 to 145871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,024 DEBUG Processing 298/633 atomic regions from SNP 89118 to 89718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,097 DEBUG Processing 400/1000 atomic regions from SNP 119784 to 120384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,142 DEBUG Processing 435/456 atomic regions from SNP 130217 to 130817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,145 DEBUG Processing 369/1109 atomic regions from SNP 110574 to 111174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,151 DEBUG Processing 501/834 atomic regions from SNP 150027 to 150627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,194 DEBUG Processing 486/858 atomic regions from SNP 145571 to 146171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,241 DEBUG Processing 299/633 atomic regions from SNP 89418 to 90018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,349 DEBUG Processing 401/1000 atomic regions from SNP 120084 to 120684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,370 DEBUG Processing 436/456 atomic regions from SNP 130517 to 131117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,383 DEBUG Processing 502/834 atomic regions from SNP 150327 to 150927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,400 DEBUG Processing 370/1109 atomic regions from SNP 110874 to 111474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,416 DEBUG Processing 487/858 atomic regions from SNP 145871 to 146471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,450 DEBUG Processing 300/633 atomic regions from SNP 89718 to 90318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,597 DEBUG Processing 437/456 atomic regions from SNP 130817 to 131417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,604 DEBUG Processing 402/1000 atomic regions from SNP 120384 to 120984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,613 DEBUG Processing 503/834 atomic regions from SNP 150627 to 151227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,637 DEBUG Processing 488/858 atomic regions from SNP 146171 to 146771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,653 DEBUG Processing 371/1109 atomic regions from SNP 111174 to 111774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,662 DEBUG Processing 301/633 atomic regions from SNP 90018 to 90618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,819 DEBUG Processing 438/456 atomic regions from SNP 131117 to 131717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:30,843 DEBUG Processing 504/834 atomic regions from SNP 150927 to 151527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,856 DEBUG Processing 403/1000 atomic regions from SNP 120684 to 121284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,856 DEBUG Processing 489/858 atomic regions from SNP 146471 to 147071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,878 DEBUG Processing 302/633 atomic regions from SNP 90318 to 90918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,910 DEBUG Processing 372/1109 atomic regions from SNP 111474 to 112074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,037 DEBUG Processing 439/456 atomic regions from SNP 131417 to 132017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,072 DEBUG Processing 505/834 atomic regions from SNP 151227 to 151827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,075 DEBUG Processing 490/858 atomic regions from SNP 146771 to 147371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,096 DEBUG Processing 303/633 atomic regions from SNP 90618 to 91218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,107 DEBUG Processing 404/1000 atomic regions from SNP 120984 to 121584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,168 DEBUG Processing 373/1109 atomic regions from SNP 111774 to 112374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,249 DEBUG Processing 440/456 atomic regions from SNP 131717 to 132317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,296 DEBUG Processing 506/834 atomic regions from SNP 151527 to 152127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,297 DEBUG Processing 491/858 atomic regions from SNP 147071 to 147671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,310 DEBUG Processing 304/633 atomic regions from SNP 90918 to 91518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,352 DEBUG Processing 405/1000 atomic regions from SNP 121284 to 121884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,422 DEBUG Processing 374/1109 atomic regions from SNP 112074 to 112674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,460 DEBUG Processing 441/456 atomic regions from SNP 132017 to 132617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,517 DEBUG Processing 507/834 atomic regions from SNP 151827 to 152427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,519 DEBUG Processing 305/633 atomic regions from SNP 91218 to 91818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,521 DEBUG Processing 492/858 atomic regions from SNP 147371 to 147971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,609 DEBUG Processing 406/1000 atomic regions from SNP 121584 to 122184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,671 DEBUG Processing 375/1109 atomic regions from SNP 112374 to 112974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,672 DEBUG Processing 442/456 atomic regions from SNP 132317 to 132917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,728 DEBUG Processing 306/633 atomic regions from SNP 91518 to 92118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,737 DEBUG Processing 508/834 atomic regions from SNP 152127 to 152727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,757 DEBUG Processing 493/858 atomic regions from SNP 147671 to 148271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,853 DEBUG Processing 407/1000 atomic regions from SNP 121884 to 122484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,887 DEBUG Processing 443/456 atomic regions from SNP 132617 to 133217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:31,923 DEBUG Processing 376/1109 atomic regions from SNP 112674 to 113274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,939 DEBUG Processing 307/633 atomic regions from SNP 91818 to 92418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,959 DEBUG Processing 509/834 atomic regions from SNP 152427 to 153027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,993 DEBUG Processing 494/858 atomic regions from SNP 147971 to 148571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,093 DEBUG Processing 408/1000 atomic regions from SNP 122184 to 122784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,100 DEBUG Processing 444/456 atomic regions from SNP 132917 to 133517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,153 DEBUG Processing 308/633 atomic regions from SNP 92118 to 92718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,173 DEBUG Processing 377/1109 atomic regions from SNP 112974 to 113574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,182 DEBUG Processing 510/834 atomic regions from SNP 152727 to 153327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,248 DEBUG Processing 495/858 atomic regions from SNP 148271 to 148871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,314 DEBUG Processing 445/456 atomic regions from SNP 133217 to 133817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,338 DEBUG Processing 409/1000 atomic regions from SNP 122484 to 123084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,366 DEBUG Processing 309/633 atomic regions from SNP 92418 to 93018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,404 DEBUG Processing 511/834 atomic regions from SNP 153027 to 153627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,428 DEBUG Processing 378/1109 atomic regions from SNP 113274 to 113874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,509 DEBUG Processing 496/858 atomic regions from SNP 148571 to 149171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,530 DEBUG Processing 446/456 atomic regions from SNP 133517 to 134117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,582 DEBUG Processing 310/633 atomic regions from SNP 92718 to 93318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,583 DEBUG Processing 410/1000 atomic regions from SNP 122784 to 123384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,625 DEBUG Processing 512/834 atomic regions from SNP 153327 to 153927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,682 DEBUG Processing 379/1109 atomic regions from SNP 113574 to 114174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,746 DEBUG Processing 447/456 atomic regions from SNP 133817 to 134417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:32,766 DEBUG Processing 497/858 atomic regions from SNP 148871 to 149471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,796 DEBUG Processing 311/633 atomic regions from SNP 93018 to 93618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,826 DEBUG Processing 411/1000 atomic regions from SNP 123084 to 123684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,844 DEBUG Processing 513/834 atomic regions from SNP 153627 to 154227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,934 DEBUG Processing 380/1109 atomic regions from SNP 113874 to 114474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,960 DEBUG Processing 448/456 atomic regions from SNP 134117 to 134717 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,004 DEBUG Processing 498/858 atomic regions from SNP 149171 to 149771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,010 DEBUG Processing 312/633 atomic regions from SNP 93318 to 93918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,066 DEBUG Processing 514/834 atomic regions from SNP 153927 to 154527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,070 DEBUG Processing 412/1000 atomic regions from SNP 123384 to 123984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,170 DEBUG Processing 449/456 atomic regions from SNP 134417 to 135017 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,187 DEBUG Processing 381/1109 atomic regions from SNP 114174 to 114774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,226 DEBUG Processing 313/633 atomic regions from SNP 93618 to 94218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,254 DEBUG Processing 499/858 atomic regions from SNP 149471 to 150071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,293 DEBUG Processing 515/834 atomic regions from SNP 154227 to 154827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,321 DEBUG Processing 413/1000 atomic regions from SNP 123684 to 124284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,386 DEBUG Processing 450/456 atomic regions from SNP 134717 to 135317 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,439 DEBUG Processing 314/633 atomic regions from SNP 93918 to 94518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,440 DEBUG Processing 382/1109 atomic regions from SNP 114474 to 115074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,507 DEBUG Processing 500/858 atomic regions from SNP 149771 to 150371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,517 DEBUG Processing 516/834 atomic regions from SNP 154527 to 155127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,569 DEBUG Processing 414/1000 atomic regions from SNP 123984 to 124584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,600 DEBUG Processing 451/456 atomic regions from SNP 135017 to 135617 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,648 DEBUG Processing 315/633 atomic regions from SNP 94218 to 94818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,688 DEBUG Processing 383/1109 atomic regions from SNP 114774 to 115374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,734 DEBUG Processing 517/834 atomic regions from SNP 154827 to 155427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,757 DEBUG Processing 501/858 atomic regions from SNP 150071 to 150671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,813 DEBUG Processing 415/1000 atomic regions from SNP 124284 to 124884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,816 DEBUG Processing 452/456 atomic regions from SNP 135317 to 135917 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:33,857 DEBUG Processing 316/633 atomic regions from SNP 94518 to 95118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,935 DEBUG Processing 384/1109 atomic regions from SNP 115074 to 115674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,947 DEBUG Processing 518/834 atomic regions from SNP 155127 to 155727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,001 DEBUG Processing 502/858 atomic regions from SNP 150371 to 150971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,030 DEBUG Processing 453/456 atomic regions from SNP 135617 to 136217 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,056 DEBUG Processing 416/1000 atomic regions from SNP 124584 to 125184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,067 DEBUG Processing 317/633 atomic regions from SNP 94818 to 95418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,161 DEBUG Processing 519/834 atomic regions from SNP 155427 to 156027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,181 DEBUG Processing 385/1109 atomic regions from SNP 115374 to 115974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,242 DEBUG Processing 454/456 atomic regions from SNP 135917 to 136517 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,252 DEBUG Processing 503/858 atomic regions from SNP 150671 to 151271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,280 DEBUG Processing 318/633 atomic regions from SNP 95118 to 95718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,305 DEBUG Processing 417/1000 atomic regions from SNP 124884 to 125484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,388 DEBUG Processing 520/834 atomic regions from SNP 155727 to 156327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,436 DEBUG Processing 386/1109 atomic regions from SNP 115674 to 116274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,454 DEBUG Processing 455/456 atomic regions from SNP 136217 to 136817 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,494 DEBUG Processing 319/633 atomic regions from SNP 95418 to 96018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,515 DEBUG Processing 504/858 atomic regions from SNP 150971 to 151571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,551 DEBUG Processing 418/1000 atomic regions from SNP 125184 to 125784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,607 DEBUG Processing 521/834 atomic regions from SNP 156027 to 156627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,665 DEBUG Processing 456/456 atomic regions from SNP 136517 to 137117 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:34,683 DEBUG Processing 387/1109 atomic regions from SNP 115974 to 116574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,712 DEBUG Processing 320/633 atomic regions from SNP 95718 to 96318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,769 DEBUG Processing 505/858 atomic regions from SNP 151271 to 151871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,778 DEBUG Unique SNPs positions in subchromosome 4: 137118 2025-01-31 09:42:34,794 DEBUG Processing 419/1000 atomic regions from SNP 125484 to 126084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,828 DEBUG Processing 522/834 atomic regions from SNP 156327 to 156927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,922 DEBUG Processing 321/633 atomic regions from SNP 96018 to 96618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,930 DEBUG Processing 388/1109 atomic regions from SNP 116274 to 116874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,000 DEBUG Processing 506/858 atomic regions from SNP 151571 to 152171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,036 DEBUG Processing 420/1000 atomic regions from SNP 125784 to 126384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,049 DEBUG Processing 523/834 atomic regions from SNP 156627 to 157227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,126 DEBUG Subchromosome time: 118.73543416708708, subchromosome SNPs: 137118 2025-01-31 09:42:35,131 DEBUG Processing 322/633 atomic regions from SNP 96318 to 96918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,142 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:35,180 DEBUG Processing 389/1109 atomic regions from SNP 116574 to 117174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,219 DEBUG Processing 507/858 atomic regions from SNP 151871 to 152471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,278 DEBUG Processing 421/1000 atomic regions from SNP 126084 to 126684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,295 DEBUG Processing 524/834 atomic regions from SNP 156927 to 157527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,342 DEBUG Processing 323/633 atomic regions from SNP 96618 to 97218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,434 DEBUG Processing 390/1109 atomic regions from SNP 116874 to 117474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,467 DEBUG Processing 508/858 atomic regions from SNP 152171 to 152771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,524 DEBUG Processing 422/1000 atomic regions from SNP 126384 to 126984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,531 DEBUG Processing 525/834 atomic regions from SNP 157227 to 157827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,554 DEBUG Processing 324/633 atomic regions from SNP 96918 to 97518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,690 DEBUG Processing 391/1109 atomic regions from SNP 117174 to 117774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,691 DEBUG Processing 509/858 atomic regions from SNP 152471 to 153071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,750 DEBUG Processing 526/834 atomic regions from SNP 157527 to 158127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,761 DEBUG Processing 325/633 atomic regions from SNP 97218 to 97818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,790 DEBUG Processing 423/1000 atomic regions from SNP 126684 to 127284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,920 DEBUG Processing 510/858 atomic regions from SNP 152771 to 153371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,953 DEBUG Processing 392/1109 atomic regions from SNP 117474 to 118074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,971 DEBUG Processing 527/834 atomic regions from SNP 157827 to 158427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,975 DEBUG Processing 326/633 atomic regions from SNP 97518 to 98118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,032 DEBUG Processing 424/1000 atomic regions from SNP 126984 to 127584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,170 DEBUG Processing 511/858 atomic regions from SNP 153071 to 153671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,188 DEBUG Processing 528/834 atomic regions from SNP 158127 to 158727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,189 DEBUG Processing 327/633 atomic regions from SNP 97818 to 98418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,209 DEBUG Processing 393/1109 atomic regions from SNP 117774 to 118374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,274 DEBUG Processing 425/1000 atomic regions from SNP 127284 to 127884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,399 DEBUG Processing 512/858 atomic regions from SNP 153371 to 153971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,403 DEBUG Processing 328/633 atomic regions from SNP 98118 to 98718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,407 DEBUG Processing 529/834 atomic regions from SNP 158427 to 159027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,486 DEBUG Processing 394/1109 atomic regions from SNP 118074 to 118674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,518 DEBUG Processing 426/1000 atomic regions from SNP 127584 to 128184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,613 DEBUG Processing 329/633 atomic regions from SNP 98418 to 99018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,621 DEBUG Processing 530/834 atomic regions from SNP 158727 to 159327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,628 DEBUG Processing 513/858 atomic regions from SNP 153671 to 154271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,755 DEBUG Processing 395/1109 atomic regions from SNP 118374 to 118974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,759 DEBUG Processing 427/1000 atomic regions from SNP 127884 to 128484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,821 DEBUG Processing 330/633 atomic regions from SNP 98718 to 99318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,833 DEBUG Processing 531/834 atomic regions from SNP 159027 to 159627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,845 DEBUG Processing 514/858 atomic regions from SNP 153971 to 154571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,007 DEBUG Processing 428/1000 atomic regions from SNP 128184 to 128784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,008 DEBUG Processing 396/1109 atomic regions from SNP 118674 to 119274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,032 DEBUG Processing 331/633 atomic regions from SNP 99018 to 99618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,053 DEBUG Processing 532/834 atomic regions from SNP 159327 to 159927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,064 DEBUG Processing 515/858 atomic regions from SNP 154271 to 154871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,245 DEBUG Processing 332/633 atomic regions from SNP 99318 to 99918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,257 DEBUG Processing 429/1000 atomic regions from SNP 128484 to 129084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,261 DEBUG Processing 397/1109 atomic regions from SNP 118974 to 119574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,271 DEBUG Processing 533/834 atomic regions from SNP 159627 to 160227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,280 DEBUG Processing 516/858 atomic regions from SNP 154571 to 155171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,457 DEBUG Processing 333/633 atomic regions from SNP 99618 to 100218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,493 DEBUG Processing 534/834 atomic regions from SNP 159927 to 160527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,502 DEBUG Processing 517/858 atomic regions from SNP 154871 to 155471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,504 DEBUG Processing 430/1000 atomic regions from SNP 128784 to 129384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,514 DEBUG Processing 398/1109 atomic regions from SNP 119274 to 119874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,667 DEBUG Processing 334/633 atomic regions from SNP 99918 to 100518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,713 DEBUG Processing 535/834 atomic regions from SNP 160227 to 160827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,720 DEBUG Processing 518/858 atomic regions from SNP 155171 to 155771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,747 DEBUG Processing 431/1000 atomic regions from SNP 129084 to 129684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,764 DEBUG Processing 399/1109 atomic regions from SNP 119574 to 120174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,879 DEBUG Processing 335/633 atomic regions from SNP 100218 to 100818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,933 DEBUG Processing 536/834 atomic regions from SNP 160527 to 161127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,941 DEBUG Processing 519/858 atomic regions from SNP 155471 to 156071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,989 DEBUG Processing 432/1000 atomic regions from SNP 129384 to 129984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,009 DEBUG Processing 400/1109 atomic regions from SNP 119874 to 120474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,087 DEBUG Processing 336/633 atomic regions from SNP 100518 to 101118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,150 DEBUG Processing 537/834 atomic regions from SNP 160827 to 161427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,154 DEBUG Processing 520/858 atomic regions from SNP 155771 to 156371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,224 DEBUG Processing 433/1000 atomic regions from SNP 129684 to 130284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,257 DEBUG Processing 401/1109 atomic regions from SNP 120174 to 120774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,299 DEBUG Processing 337/633 atomic regions from SNP 100818 to 101418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,372 DEBUG Processing 538/834 atomic regions from SNP 161127 to 161727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,374 DEBUG Processing 521/858 atomic regions from SNP 156071 to 156671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,464 DEBUG Processing 434/1000 atomic regions from SNP 129984 to 130584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,510 DEBUG Processing 402/1109 atomic regions from SNP 120474 to 121074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,513 DEBUG Processing 338/633 atomic regions from SNP 101118 to 101718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,591 DEBUG Processing 522/858 atomic regions from SNP 156371 to 156971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,596 DEBUG Processing 539/834 atomic regions from SNP 161427 to 162027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,703 DEBUG Processing 435/1000 atomic regions from SNP 130284 to 130884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,731 DEBUG Processing 339/633 atomic regions from SNP 101418 to 102018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,769 DEBUG Processing 403/1109 atomic regions from SNP 120774 to 121374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,814 DEBUG Processing 523/858 atomic regions from SNP 156671 to 157271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,817 DEBUG Processing 540/834 atomic regions from SNP 161727 to 162327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,944 DEBUG Processing 436/1000 atomic regions from SNP 130584 to 131184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,945 DEBUG Processing 340/633 atomic regions from SNP 101718 to 102318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,022 DEBUG Processing 404/1109 atomic regions from SNP 121074 to 121674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,031 DEBUG Processing 524/858 atomic regions from SNP 156971 to 157571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,034 DEBUG Processing 541/834 atomic regions from SNP 162027 to 162627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,159 DEBUG Processing 341/633 atomic regions from SNP 102018 to 102618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,187 DEBUG Processing 437/1000 atomic regions from SNP 130884 to 131484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,253 DEBUG Processing 542/834 atomic regions from SNP 162327 to 162927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,257 DEBUG Processing 525/858 atomic regions from SNP 157271 to 157871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,278 DEBUG Processing 405/1109 atomic regions from SNP 121374 to 121974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,369 DEBUG Processing 342/633 atomic regions from SNP 102318 to 102918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,432 DEBUG Processing 438/1000 atomic regions from SNP 131184 to 131784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,477 DEBUG Processing 543/834 atomic regions from SNP 162627 to 163227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,483 DEBUG Processing 526/858 atomic regions from SNP 157571 to 158171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,528 DEBUG Processing 406/1109 atomic regions from SNP 121674 to 122274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,580 DEBUG Processing 343/633 atomic regions from SNP 102618 to 103218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,678 DEBUG Processing 439/1000 atomic regions from SNP 131484 to 132084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,722 DEBUG Processing 544/834 atomic regions from SNP 162927 to 163527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,724 DEBUG Processing 527/858 atomic regions from SNP 157871 to 158471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,793 DEBUG Processing 344/633 atomic regions from SNP 102918 to 103518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,810 DEBUG Processing 407/1109 atomic regions from SNP 121974 to 122574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,923 DEBUG Processing 440/1000 atomic regions from SNP 131784 to 132384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,945 DEBUG Processing 528/858 atomic regions from SNP 158171 to 158771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,969 DEBUG Processing 545/834 atomic regions from SNP 163227 to 163827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,006 DEBUG Processing 345/633 atomic regions from SNP 103218 to 103818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,091 DEBUG Processing 408/1109 atomic regions from SNP 122274 to 122874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,168 DEBUG Processing 441/1000 atomic regions from SNP 132084 to 132684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,179 DEBUG Processing 529/858 atomic regions from SNP 158471 to 159071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,203 DEBUG Processing 546/834 atomic regions from SNP 163527 to 164127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,217 DEBUG Processing 346/633 atomic regions from SNP 103518 to 104118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,372 DEBUG Processing 409/1109 atomic regions from SNP 122574 to 123174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,415 DEBUG Processing 442/1000 atomic regions from SNP 132384 to 132984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,427 DEBUG Processing 530/858 atomic regions from SNP 158771 to 159371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,429 DEBUG Processing 547/834 atomic regions from SNP 163827 to 164427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,433 DEBUG Processing 347/633 atomic regions from SNP 103818 to 104418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,645 DEBUG Processing 410/1109 atomic regions from SNP 122874 to 123474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,654 DEBUG Processing 348/633 atomic regions from SNP 104118 to 104718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,656 DEBUG Processing 531/858 atomic regions from SNP 159071 to 159671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,657 DEBUG Processing 548/834 atomic regions from SNP 164127 to 164727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,666 DEBUG Processing 443/1000 atomic regions from SNP 132684 to 133284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,872 DEBUG Processing 349/633 atomic regions from SNP 104418 to 105018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,879 DEBUG Processing 549/834 atomic regions from SNP 164427 to 165027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,897 DEBUG Processing 532/858 atomic regions from SNP 159371 to 159971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,909 DEBUG Processing 444/1000 atomic regions from SNP 132984 to 133584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,916 DEBUG Processing 411/1109 atomic regions from SNP 123174 to 123774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,086 DEBUG Processing 350/633 atomic regions from SNP 104718 to 105318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,097 DEBUG Processing 550/834 atomic regions from SNP 164727 to 165327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,139 DEBUG Processing 533/858 atomic regions from SNP 159671 to 160271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,152 DEBUG Processing 445/1000 atomic regions from SNP 133284 to 133884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,208 DEBUG Processing 412/1109 atomic regions from SNP 123474 to 124074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,299 DEBUG Processing 351/633 atomic regions from SNP 105018 to 105618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,313 DEBUG Processing 551/834 atomic regions from SNP 165027 to 165627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,382 DEBUG Processing 534/858 atomic regions from SNP 159971 to 160571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,395 DEBUG Processing 446/1000 atomic regions from SNP 133584 to 134184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,497 DEBUG Processing 413/1109 atomic regions from SNP 123774 to 124374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,510 DEBUG Processing 352/633 atomic regions from SNP 105318 to 105918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,528 DEBUG Processing 552/834 atomic regions from SNP 165327 to 165927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,604 DEBUG Processing 535/858 atomic regions from SNP 160271 to 160871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,638 DEBUG Processing 447/1000 atomic regions from SNP 133884 to 134484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,736 DEBUG Processing 353/633 atomic regions from SNP 105618 to 106218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,749 DEBUG Processing 553/834 atomic regions from SNP 165627 to 166227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,788 DEBUG Processing 414/1109 atomic regions from SNP 124074 to 124674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,829 DEBUG Processing 536/858 atomic regions from SNP 160571 to 161171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,882 DEBUG Processing 448/1000 atomic regions from SNP 134184 to 134784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,955 DEBUG Processing 354/633 atomic regions from SNP 105918 to 106518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,973 DEBUG Processing 554/834 atomic regions from SNP 165927 to 166527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,051 DEBUG Processing 415/1109 atomic regions from SNP 124374 to 124974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,076 DEBUG Processing 537/858 atomic regions from SNP 160871 to 161471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,128 DEBUG Processing 449/1000 atomic regions from SNP 134484 to 135084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,189 DEBUG Processing 355/633 atomic regions from SNP 106218 to 106818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,206 DEBUG Processing 555/834 atomic regions from SNP 166227 to 166827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,308 DEBUG Processing 416/1109 atomic regions from SNP 124674 to 125274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,323 DEBUG Processing 538/858 atomic regions from SNP 161171 to 161771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,375 DEBUG Processing 450/1000 atomic regions from SNP 134784 to 135384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,407 DEBUG Processing 356/633 atomic regions from SNP 106518 to 107118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,432 DEBUG Processing 556/834 atomic regions from SNP 166527 to 167127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,549 DEBUG Processing 539/858 atomic regions from SNP 161471 to 162071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,567 DEBUG Processing 417/1109 atomic regions from SNP 124974 to 125574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,621 DEBUG Processing 357/633 atomic regions from SNP 106818 to 107418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,624 DEBUG Processing 451/1000 atomic regions from SNP 135084 to 135684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,658 DEBUG Processing 557/834 atomic regions from SNP 166827 to 167427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,779 DEBUG Processing 540/858 atomic regions from SNP 161771 to 162371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,831 DEBUG Processing 418/1109 atomic regions from SNP 125274 to 125874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,846 DEBUG Processing 358/633 atomic regions from SNP 107118 to 107718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,881 DEBUG Processing 452/1000 atomic regions from SNP 135384 to 135984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,892 DEBUG Processing 558/834 atomic regions from SNP 167127 to 167727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,011 DEBUG Processing 541/858 atomic regions from SNP 162071 to 162671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,039 DEBUG Segmenting atomic regions: 2025-01-31 09:42:43,091 DEBUG Processing 359/633 atomic regions from SNP 107418 to 108018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,095 DEBUG Processing 419/1109 atomic regions from SNP 125574 to 126174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,119 DEBUG Processing 559/834 atomic regions from SNP 167427 to 168027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,132 DEBUG Processing 453/1000 atomic regions from SNP 135684 to 136284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,139 DEBUG Processing 1/221 atomic regions from SNP 0 to 602 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:43,249 DEBUG Processing 542/858 atomic regions from SNP 162371 to 162971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,323 DEBUG Processing 360/633 atomic regions from SNP 107718 to 108318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,352 DEBUG Processing 560/834 atomic regions from SNP 167727 to 168327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,353 DEBUG Processing 420/1109 atomic regions from SNP 125874 to 126474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,370 DEBUG Processing 2/221 atomic regions from SNP 302 to 904 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:43,387 DEBUG Processing 454/1000 atomic regions from SNP 135984 to 136584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,498 DEBUG Processing 543/858 atomic regions from SNP 162671 to 163271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,541 DEBUG Processing 361/633 atomic regions from SNP 108018 to 108618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,594 DEBUG Processing 561/834 atomic regions from SNP 168027 to 168627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,607 DEBUG Processing 3/221 atomic regions from SNP 604 to 1206 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:43,614 DEBUG Processing 421/1109 atomic regions from SNP 126174 to 126774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,655 DEBUG Processing 455/1000 atomic regions from SNP 136284 to 136884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,741 DEBUG Processing 544/858 atomic regions from SNP 162971 to 163571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,759 DEBUG Processing 362/633 atomic regions from SNP 108318 to 108918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,829 DEBUG Processing 562/834 atomic regions from SNP 168327 to 168927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,840 DEBUG Processing 4/221 atomic regions from SNP 906 to 1508 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:43,877 DEBUG Processing 422/1109 atomic regions from SNP 126474 to 127074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,909 DEBUG Processing 456/1000 atomic regions from SNP 136584 to 137184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,976 DEBUG Processing 363/633 atomic regions from SNP 108618 to 109218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,983 DEBUG Processing 545/858 atomic regions from SNP 163271 to 163871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,061 DEBUG Processing 563/834 atomic regions from SNP 168627 to 169227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,070 DEBUG Processing 5/221 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:44,147 DEBUG Processing 423/1109 atomic regions from SNP 126774 to 127374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,160 DEBUG Processing 457/1000 atomic regions from SNP 136884 to 137484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,195 DEBUG Processing 364/633 atomic regions from SNP 108918 to 109518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,205 DEBUG Processing 546/858 atomic regions from SNP 163571 to 164171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,291 DEBUG Processing 564/834 atomic regions from SNP 168927 to 169527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,297 DEBUG Processing 6/221 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:44,412 DEBUG Processing 458/1000 atomic regions from SNP 137184 to 137784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,415 DEBUG Processing 424/1109 atomic regions from SNP 127074 to 127674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,417 DEBUG Processing 365/633 atomic regions from SNP 109218 to 109818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,446 DEBUG Processing 547/858 atomic regions from SNP 163871 to 164471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,518 DEBUG Processing 7/221 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:44,519 DEBUG Processing 565/834 atomic regions from SNP 169227 to 169827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,640 DEBUG Processing 366/633 atomic regions from SNP 109518 to 110118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,658 DEBUG Processing 459/1000 atomic regions from SNP 137484 to 138084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,673 DEBUG Processing 425/1109 atomic regions from SNP 127374 to 127974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,681 DEBUG Processing 548/858 atomic regions from SNP 164171 to 164771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,742 DEBUG Processing 8/221 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:44,746 DEBUG Processing 566/834 atomic regions from SNP 169527 to 170127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,860 DEBUG Processing 367/633 atomic regions from SNP 109818 to 110418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,905 DEBUG Processing 460/1000 atomic regions from SNP 137784 to 138384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,907 DEBUG Processing 549/858 atomic regions from SNP 164471 to 165071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,933 DEBUG Processing 426/1109 atomic regions from SNP 127674 to 128274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,963 DEBUG Processing 9/221 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:44,968 DEBUG Processing 567/834 atomic regions from SNP 169827 to 170427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,077 DEBUG Processing 368/633 atomic regions from SNP 110118 to 110718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,134 DEBUG Processing 550/858 atomic regions from SNP 164771 to 165371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,151 DEBUG Processing 461/1000 atomic regions from SNP 138084 to 138684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,186 DEBUG Processing 10/221 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:45,193 DEBUG Processing 427/1109 atomic regions from SNP 127974 to 128574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,195 DEBUG Processing 568/834 atomic regions from SNP 170127 to 170727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,292 DEBUG Processing 369/633 atomic regions from SNP 110418 to 111018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,370 DEBUG Processing 551/858 atomic regions from SNP 165071 to 165671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,399 DEBUG Processing 462/1000 atomic regions from SNP 138384 to 138984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,409 DEBUG Processing 11/221 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:45,443 DEBUG Processing 569/834 atomic regions from SNP 170427 to 171027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,459 DEBUG Processing 428/1109 atomic regions from SNP 128274 to 128874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,507 DEBUG Processing 370/633 atomic regions from SNP 110718 to 111318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,606 DEBUG Processing 552/858 atomic regions from SNP 165371 to 165971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,640 DEBUG Processing 12/221 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:45,653 DEBUG Processing 463/1000 atomic regions from SNP 138684 to 139284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,675 DEBUG Processing 570/834 atomic regions from SNP 170727 to 171327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,720 DEBUG Processing 429/1109 atomic regions from SNP 128574 to 129174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,724 DEBUG Processing 371/633 atomic regions from SNP 111018 to 111618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,856 DEBUG Processing 553/858 atomic regions from SNP 165671 to 166271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,864 DEBUG Processing 13/221 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:45,902 DEBUG Processing 464/1000 atomic regions from SNP 138984 to 139584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,904 DEBUG Processing 571/834 atomic regions from SNP 171027 to 171627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,944 DEBUG Processing 372/633 atomic regions from SNP 111318 to 111918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,979 DEBUG Processing 430/1109 atomic regions from SNP 128874 to 129474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,094 DEBUG Processing 14/221 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:46,100 DEBUG Processing 554/858 atomic regions from SNP 165971 to 166571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,138 DEBUG Processing 572/834 atomic regions from SNP 171327 to 171927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,157 DEBUG Processing 465/1000 atomic regions from SNP 139284 to 139884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,170 DEBUG Processing 373/633 atomic regions from SNP 111618 to 112218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,237 DEBUG Processing 431/1109 atomic regions from SNP 129174 to 129774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,325 DEBUG Processing 15/221 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:46,345 DEBUG Processing 555/858 atomic regions from SNP 166271 to 166871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,392 DEBUG Processing 573/834 atomic regions from SNP 171627 to 172227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,395 DEBUG Processing 374/633 atomic regions from SNP 111918 to 112518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,417 DEBUG Processing 466/1000 atomic regions from SNP 139584 to 140184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,494 DEBUG Processing 432/1109 atomic regions from SNP 129474 to 130074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,545 DEBUG Processing 16/221 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:46,569 DEBUG Processing 556/858 atomic regions from SNP 166571 to 167171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,615 DEBUG Processing 375/633 atomic regions from SNP 112218 to 112818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,639 DEBUG Processing 574/834 atomic regions from SNP 171927 to 172527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,665 DEBUG Processing 467/1000 atomic regions from SNP 139884 to 140484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,752 DEBUG Processing 433/1109 atomic regions from SNP 129774 to 130374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,762 DEBUG Processing 17/221 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:46,789 DEBUG Processing 557/858 atomic regions from SNP 166871 to 167471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,831 DEBUG Processing 376/633 atomic regions from SNP 112518 to 113118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,865 DEBUG Processing 575/834 atomic regions from SNP 172227 to 172827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,916 DEBUG Processing 468/1000 atomic regions from SNP 140184 to 140784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,977 DEBUG Processing 18/221 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:47,005 DEBUG Processing 434/1109 atomic regions from SNP 130074 to 130674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,010 DEBUG Processing 558/858 atomic regions from SNP 167171 to 167771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,047 DEBUG Processing 377/633 atomic regions from SNP 112818 to 113418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,089 DEBUG Processing 576/834 atomic regions from SNP 172527 to 173127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,169 DEBUG Processing 469/1000 atomic regions from SNP 140484 to 141084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,198 DEBUG Processing 19/221 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:47,243 DEBUG Processing 559/858 atomic regions from SNP 167471 to 168071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,259 DEBUG Processing 378/633 atomic regions from SNP 113118 to 113718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,262 DEBUG Processing 435/1109 atomic regions from SNP 130374 to 130974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,308 DEBUG Processing 577/834 atomic regions from SNP 172827 to 173427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,418 DEBUG Processing 470/1000 atomic regions from SNP 140784 to 141384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,422 DEBUG Processing 20/221 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:47,477 DEBUG Processing 379/633 atomic regions from SNP 113418 to 114018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,485 DEBUG Processing 560/858 atomic regions from SNP 167771 to 168371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,517 DEBUG Processing 436/1109 atomic regions from SNP 130674 to 131274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,531 DEBUG Processing 578/834 atomic regions from SNP 173127 to 173727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,646 DEBUG Processing 21/221 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:47,669 DEBUG Processing 471/1000 atomic regions from SNP 141084 to 141684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,700 DEBUG Processing 380/633 atomic regions from SNP 113718 to 114318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,735 DEBUG Processing 561/858 atomic regions from SNP 168071 to 168671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,756 DEBUG Processing 579/834 atomic regions from SNP 173427 to 174027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,775 DEBUG Processing 437/1109 atomic regions from SNP 130974 to 131574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,869 DEBUG Processing 22/221 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:47,920 DEBUG Processing 472/1000 atomic regions from SNP 141384 to 141984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,923 DEBUG Processing 381/633 atomic regions from SNP 114018 to 114618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,965 DEBUG Processing 562/858 atomic regions from SNP 168371 to 168971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,987 DEBUG Processing 580/834 atomic regions from SNP 173727 to 174327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,039 DEBUG Processing 438/1109 atomic regions from SNP 131274 to 131874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,091 DEBUG Processing 23/221 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:48,142 DEBUG Processing 382/633 atomic regions from SNP 114318 to 114918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,165 DEBUG Processing 473/1000 atomic regions from SNP 141684 to 142284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,189 DEBUG Processing 563/858 atomic regions from SNP 168671 to 169271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,225 DEBUG Processing 581/834 atomic regions from SNP 174027 to 174627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,297 DEBUG Processing 439/1109 atomic regions from SNP 131574 to 132174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,316 DEBUG Processing 24/221 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:48,361 DEBUG Processing 383/633 atomic regions from SNP 114618 to 115218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,415 DEBUG Processing 564/858 atomic regions from SNP 168971 to 169571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,421 DEBUG Processing 474/1000 atomic regions from SNP 141984 to 142584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,468 DEBUG Processing 582/834 atomic regions from SNP 174327 to 174927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,544 DEBUG Processing 25/221 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:48,556 DEBUG Processing 440/1109 atomic regions from SNP 131874 to 132474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,582 DEBUG Processing 384/633 atomic regions from SNP 114918 to 115518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,641 DEBUG Processing 565/858 atomic regions from SNP 169271 to 169871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,704 DEBUG Processing 583/834 atomic regions from SNP 174627 to 175227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,705 DEBUG Processing 475/1000 atomic regions from SNP 142284 to 142884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,773 DEBUG Processing 26/221 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:48,804 DEBUG Processing 385/633 atomic regions from SNP 115218 to 115818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,816 DEBUG Processing 441/1109 atomic regions from SNP 132174 to 132774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,863 DEBUG Processing 566/858 atomic regions from SNP 169571 to 170171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,932 DEBUG Processing 584/834 atomic regions from SNP 174927 to 175527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,980 DEBUG Processing 476/1000 atomic regions from SNP 142584 to 143184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,004 DEBUG Processing 27/221 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:49,025 DEBUG Processing 386/633 atomic regions from SNP 115518 to 116118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,078 DEBUG Processing 442/1109 atomic regions from SNP 132474 to 133074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,090 DEBUG Processing 567/858 atomic regions from SNP 169871 to 170471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,155 DEBUG Processing 585/834 atomic regions from SNP 175227 to 175827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,233 DEBUG Processing 28/221 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:49,237 DEBUG Processing 477/1000 atomic regions from SNP 142884 to 143484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,246 DEBUG Processing 387/633 atomic regions from SNP 115818 to 116418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,334 DEBUG Processing 568/858 atomic regions from SNP 170171 to 170771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,341 DEBUG Processing 443/1109 atomic regions from SNP 132774 to 133374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,378 DEBUG Processing 586/834 atomic regions from SNP 175527 to 176127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,461 DEBUG Processing 29/221 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:49,463 DEBUG Processing 388/633 atomic regions from SNP 116118 to 116718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,490 DEBUG Processing 478/1000 atomic regions from SNP 143184 to 143784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,586 DEBUG Processing 569/858 atomic regions from SNP 170471 to 171071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,601 DEBUG Processing 444/1109 atomic regions from SNP 133074 to 133674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,602 DEBUG Processing 587/834 atomic regions from SNP 175827 to 176427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,675 DEBUG Processing 389/633 atomic regions from SNP 116418 to 117018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,685 DEBUG Processing 30/221 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:49,739 DEBUG Processing 479/1000 atomic regions from SNP 143484 to 144084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,815 DEBUG Processing 570/858 atomic regions from SNP 170771 to 171371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,828 DEBUG Processing 588/834 atomic regions from SNP 176127 to 176727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,856 DEBUG Processing 445/1109 atomic regions from SNP 133374 to 133974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,890 DEBUG Processing 390/633 atomic regions from SNP 116718 to 117318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,911 DEBUG Processing 31/221 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:49,991 DEBUG Processing 480/1000 atomic regions from SNP 143784 to 144384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,042 DEBUG Processing 571/858 atomic regions from SNP 171071 to 171671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,057 DEBUG Processing 589/834 atomic regions from SNP 176427 to 177027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,107 DEBUG Processing 391/633 atomic regions from SNP 117018 to 117618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,118 DEBUG Processing 446/1109 atomic regions from SNP 133674 to 134274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,138 DEBUG Processing 32/221 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:50,247 DEBUG Processing 481/1000 atomic regions from SNP 144084 to 144684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,283 DEBUG Processing 572/858 atomic regions from SNP 171371 to 171971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,286 DEBUG Processing 590/834 atomic regions from SNP 176727 to 177327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,325 DEBUG Processing 392/633 atomic regions from SNP 117318 to 117918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,362 DEBUG Processing 33/221 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:50,378 DEBUG Processing 447/1109 atomic regions from SNP 133974 to 134574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,500 DEBUG Processing 482/1000 atomic regions from SNP 144384 to 144984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,512 DEBUG Processing 591/834 atomic regions from SNP 177027 to 177627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,532 DEBUG Processing 573/858 atomic regions from SNP 171671 to 172271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,541 DEBUG Processing 393/633 atomic regions from SNP 117618 to 118218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,582 DEBUG Processing 34/221 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:50,635 DEBUG Processing 448/1109 atomic regions from SNP 134274 to 134874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,739 DEBUG Processing 592/834 atomic regions from SNP 177327 to 177927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,750 DEBUG Processing 483/1000 atomic regions from SNP 144684 to 145284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,755 DEBUG Processing 394/633 atomic regions from SNP 117918 to 118518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,788 DEBUG Processing 574/858 atomic regions from SNP 171971 to 172571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,800 DEBUG Processing 35/221 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:50,891 DEBUG Processing 449/1109 atomic regions from SNP 134574 to 135174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,970 DEBUG Processing 395/633 atomic regions from SNP 118218 to 118818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,971 DEBUG Processing 593/834 atomic regions from SNP 177627 to 178227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,999 DEBUG Processing 484/1000 atomic regions from SNP 144984 to 145584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,017 DEBUG Processing 36/221 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:51,046 DEBUG Processing 575/858 atomic regions from SNP 172271 to 172871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,150 DEBUG Processing 450/1109 atomic regions from SNP 134874 to 135474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,207 DEBUG Processing 396/633 atomic regions from SNP 118518 to 119118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,228 DEBUG Processing 594/834 atomic regions from SNP 177927 to 178527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,243 DEBUG Processing 37/221 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:51,257 DEBUG Processing 485/1000 atomic regions from SNP 145284 to 145884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,303 DEBUG Processing 576/858 atomic regions from SNP 172571 to 173171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,408 DEBUG Processing 451/1109 atomic regions from SNP 135174 to 135774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,447 DEBUG Processing 397/633 atomic regions from SNP 118818 to 119418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,474 DEBUG Processing 38/221 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:51,477 DEBUG Processing 595/834 atomic regions from SNP 178227 to 178827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,510 DEBUG Processing 486/1000 atomic regions from SNP 145584 to 146184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,547 DEBUG Processing 577/858 atomic regions from SNP 172871 to 173471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,667 DEBUG Processing 398/633 atomic regions from SNP 119118 to 119718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,669 DEBUG Processing 452/1109 atomic regions from SNP 135474 to 136074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,703 DEBUG Processing 39/221 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:51,707 DEBUG Processing 596/834 atomic regions from SNP 178527 to 179127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,759 DEBUG Processing 487/1000 atomic regions from SNP 145884 to 146484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,784 DEBUG Processing 578/858 atomic regions from SNP 173171 to 173771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,894 DEBUG Processing 399/633 atomic regions from SNP 119418 to 120018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,931 DEBUG Processing 40/221 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:51,937 DEBUG Processing 453/1109 atomic regions from SNP 135774 to 136374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,946 DEBUG Processing 597/834 atomic regions from SNP 178827 to 179427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,010 DEBUG Processing 488/1000 atomic regions from SNP 146184 to 146784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,014 DEBUG Processing 579/858 atomic regions from SNP 173471 to 174071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,122 DEBUG Processing 400/633 atomic regions from SNP 119718 to 120318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,160 DEBUG Processing 41/221 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:52,182 DEBUG Processing 598/834 atomic regions from SNP 179127 to 179727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,200 DEBUG Processing 454/1109 atomic regions from SNP 136074 to 136674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,238 DEBUG Processing 580/858 atomic regions from SNP 173771 to 174371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,264 DEBUG Processing 489/1000 atomic regions from SNP 146484 to 147084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,351 DEBUG Processing 401/633 atomic regions from SNP 120018 to 120618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,384 DEBUG Processing 42/221 atomic regions from SNP 12382 to 12983 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:52,415 DEBUG Processing 599/834 atomic regions from SNP 179427 to 180027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,460 DEBUG Processing 455/1109 atomic regions from SNP 136374 to 136974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,462 DEBUG Processing 581/858 atomic regions from SNP 174071 to 174671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,515 DEBUG Processing 490/1000 atomic regions from SNP 146784 to 147384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,597 DEBUG Processing 402/633 atomic regions from SNP 120318 to 120918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,608 DEBUG Processing 43/221 atomic regions from SNP 12683 to 13284 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:52,647 DEBUG Processing 600/834 atomic regions from SNP 179727 to 180327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,686 DEBUG Processing 582/858 atomic regions from SNP 174371 to 174971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,717 DEBUG Processing 456/1109 atomic regions from SNP 136674 to 137274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,770 DEBUG Processing 491/1000 atomic regions from SNP 147084 to 147684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,825 DEBUG Processing 403/633 atomic regions from SNP 120618 to 121218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,836 DEBUG Processing 44/221 atomic regions from SNP 12984 to 13585 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:52,881 DEBUG Processing 601/834 atomic regions from SNP 180027 to 180627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,911 DEBUG Processing 583/858 atomic regions from SNP 174671 to 175271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,998 DEBUG Processing 457/1109 atomic regions from SNP 136974 to 137574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,022 DEBUG Processing 492/1000 atomic regions from SNP 147384 to 147984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,050 DEBUG Processing 404/633 atomic regions from SNP 120918 to 121518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,063 DEBUG Processing 45/221 atomic regions from SNP 13285 to 13886 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:53,122 DEBUG Processing 602/834 atomic regions from SNP 180327 to 180927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,137 DEBUG Processing 584/858 atomic regions from SNP 174971 to 175571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,270 DEBUG Processing 493/1000 atomic regions from SNP 147684 to 148284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,273 DEBUG Processing 458/1109 atomic regions from SNP 137274 to 137874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,289 DEBUG Processing 46/221 atomic regions from SNP 13586 to 14187 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:53,291 DEBUG Processing 405/633 atomic regions from SNP 121218 to 121818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,365 DEBUG Processing 585/858 atomic regions from SNP 175271 to 175871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,366 DEBUG Processing 603/834 atomic regions from SNP 180627 to 181227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,504 DEBUG Processing 47/221 atomic regions from SNP 13887 to 14488 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:53,512 DEBUG Processing 494/1000 atomic regions from SNP 147984 to 148584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,529 DEBUG Processing 459/1109 atomic regions from SNP 137574 to 138174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,537 DEBUG Processing 406/633 atomic regions from SNP 121518 to 122118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,594 DEBUG Processing 586/858 atomic regions from SNP 175571 to 176171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,619 DEBUG Processing 604/834 atomic regions from SNP 180927 to 181527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,714 DEBUG Processing 48/221 atomic regions from SNP 14188 to 14789 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:53,755 DEBUG Processing 495/1000 atomic regions from SNP 148284 to 148884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,760 DEBUG Processing 407/633 atomic regions from SNP 121818 to 122418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,785 DEBUG Processing 460/1109 atomic regions from SNP 137874 to 138474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,822 DEBUG Processing 587/858 atomic regions from SNP 175871 to 176471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,868 DEBUG Processing 605/834 atomic regions from SNP 181227 to 181827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,931 DEBUG Processing 49/221 atomic regions from SNP 14489 to 15090 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:53,999 DEBUG Processing 496/1000 atomic regions from SNP 148584 to 149184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,000 DEBUG Processing 408/633 atomic regions from SNP 122118 to 122718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,042 DEBUG Processing 461/1109 atomic regions from SNP 138174 to 138774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,049 DEBUG Processing 588/858 atomic regions from SNP 176171 to 176771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,134 DEBUG Processing 606/834 atomic regions from SNP 181527 to 182127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,157 DEBUG Processing 50/221 atomic regions from SNP 14790 to 15391 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:54,250 DEBUG Processing 497/1000 atomic regions from SNP 148884 to 149484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,254 DEBUG Processing 409/633 atomic regions from SNP 122418 to 123018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,276 DEBUG Processing 589/858 atomic regions from SNP 176471 to 177071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,302 DEBUG Processing 462/1109 atomic regions from SNP 138474 to 139074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,377 DEBUG Processing 607/834 atomic regions from SNP 181827 to 182427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,385 DEBUG Processing 51/221 atomic regions from SNP 15091 to 15692 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:54,487 DEBUG Processing 410/633 atomic regions from SNP 122718 to 123318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,496 DEBUG Processing 498/1000 atomic regions from SNP 149184 to 149784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,504 DEBUG Processing 590/858 atomic regions from SNP 176771 to 177371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,562 DEBUG Processing 463/1109 atomic regions from SNP 138774 to 139374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,605 DEBUG Processing 52/221 atomic regions from SNP 15392 to 15993 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:54,619 DEBUG Processing 608/834 atomic regions from SNP 182127 to 182727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,710 DEBUG Processing 411/633 atomic regions from SNP 123018 to 123618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,733 DEBUG Processing 591/858 atomic regions from SNP 177071 to 177671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,740 DEBUG Processing 499/1000 atomic regions from SNP 149484 to 150084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,820 DEBUG Processing 464/1109 atomic regions from SNP 139074 to 139674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,822 DEBUG Processing 53/221 atomic regions from SNP 15693 to 16294 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:54,862 DEBUG Processing 609/834 atomic regions from SNP 182427 to 183027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,939 DEBUG Processing 412/633 atomic regions from SNP 123318 to 123918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,966 DEBUG Processing 592/858 atomic regions from SNP 177371 to 177971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,987 DEBUG Processing 500/1000 atomic regions from SNP 149784 to 150384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,032 DEBUG Processing 54/221 atomic regions from SNP 15994 to 16595 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:55,074 DEBUG Processing 465/1109 atomic regions from SNP 139374 to 139974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,105 DEBUG Processing 610/834 atomic regions from SNP 182727 to 183327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,187 DEBUG Processing 413/633 atomic regions from SNP 123618 to 124218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,196 DEBUG Processing 593/858 atomic regions from SNP 177671 to 178271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,235 DEBUG Processing 501/1000 atomic regions from SNP 150084 to 150684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,245 DEBUG Processing 55/221 atomic regions from SNP 16295 to 16896 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:55,330 DEBUG Processing 466/1109 atomic regions from SNP 139674 to 140274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,345 DEBUG Processing 611/834 atomic regions from SNP 183027 to 183627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,417 DEBUG Processing 414/633 atomic regions from SNP 123918 to 124518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,423 DEBUG Processing 594/858 atomic regions from SNP 177971 to 178571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,463 DEBUG Processing 56/221 atomic regions from SNP 16596 to 17197 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:55,480 DEBUG Processing 502/1000 atomic regions from SNP 150384 to 150984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,587 DEBUG Processing 467/1109 atomic regions from SNP 139974 to 140574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,592 DEBUG Processing 612/834 atomic regions from SNP 183327 to 183927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,646 DEBUG Processing 595/858 atomic regions from SNP 178271 to 178871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,654 DEBUG Processing 415/633 atomic regions from SNP 124218 to 124818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,681 DEBUG Processing 57/221 atomic regions from SNP 16897 to 17498 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:55,726 DEBUG Processing 503/1000 atomic regions from SNP 150684 to 151284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,846 DEBUG Processing 468/1109 atomic regions from SNP 140274 to 140874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,857 DEBUG Processing 613/834 atomic regions from SNP 183627 to 184227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,869 DEBUG Processing 596/858 atomic regions from SNP 178571 to 179171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,875 DEBUG Processing 416/633 atomic regions from SNP 124518 to 125118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,898 DEBUG Processing 58/221 atomic regions from SNP 17198 to 17799 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:55,971 DEBUG Processing 504/1000 atomic regions from SNP 150984 to 151584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,095 DEBUG Processing 597/858 atomic regions from SNP 178871 to 179471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,098 DEBUG Processing 417/633 atomic regions from SNP 124818 to 125418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,107 DEBUG Processing 469/1109 atomic regions from SNP 140574 to 141174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,111 DEBUG Processing 614/834 atomic regions from SNP 183927 to 184527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,119 DEBUG Processing 59/221 atomic regions from SNP 17499 to 18100 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:56,223 DEBUG Processing 505/1000 atomic regions from SNP 151284 to 151884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,325 DEBUG Processing 418/633 atomic regions from SNP 125118 to 125718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,327 DEBUG Processing 598/858 atomic regions from SNP 179171 to 179771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,336 DEBUG Processing 60/221 atomic regions from SNP 17800 to 18401 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:56,358 DEBUG Processing 615/834 atomic regions from SNP 184227 to 184827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,379 DEBUG Processing 470/1109 atomic regions from SNP 140874 to 141474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,482 DEBUG Processing 506/1000 atomic regions from SNP 151584 to 152184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,550 DEBUG Processing 419/633 atomic regions from SNP 125418 to 126018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,557 DEBUG Processing 61/221 atomic regions from SNP 18101 to 18702 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:56,559 DEBUG Processing 599/858 atomic regions from SNP 179471 to 180071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,582 DEBUG Processing 616/834 atomic regions from SNP 184527 to 185127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,648 DEBUG Processing 471/1109 atomic regions from SNP 141174 to 141774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,751 DEBUG Processing 507/1000 atomic regions from SNP 151884 to 152484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,786 DEBUG Processing 62/221 atomic regions from SNP 18402 to 19003 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:56,786 DEBUG Processing 420/633 atomic regions from SNP 125718 to 126318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,790 DEBUG Processing 600/858 atomic regions from SNP 179771 to 180371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,812 DEBUG Processing 617/834 atomic regions from SNP 184827 to 185427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,907 DEBUG Processing 472/1109 atomic regions from SNP 141474 to 142074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,009 DEBUG Processing 63/221 atomic regions from SNP 18703 to 19304 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:57,016 DEBUG Processing 508/1000 atomic regions from SNP 152184 to 152784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,019 DEBUG Processing 601/858 atomic regions from SNP 180071 to 180671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,037 DEBUG Processing 421/633 atomic regions from SNP 126018 to 126618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,044 DEBUG Processing 618/834 atomic regions from SNP 185127 to 185727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,167 DEBUG Processing 473/1109 atomic regions from SNP 141774 to 142374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,230 DEBUG Processing 64/221 atomic regions from SNP 19004 to 19605 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:57,248 DEBUG Processing 602/858 atomic regions from SNP 180371 to 180971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,274 DEBUG Processing 422/633 atomic regions from SNP 126318 to 126918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,276 DEBUG Processing 509/1000 atomic regions from SNP 152484 to 153084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,277 DEBUG Processing 619/834 atomic regions from SNP 185427 to 186027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,441 DEBUG Processing 474/1109 atomic regions from SNP 142074 to 142674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,449 DEBUG Processing 65/221 atomic regions from SNP 19305 to 19906 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:57,478 DEBUG Processing 603/858 atomic regions from SNP 180671 to 181271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,514 DEBUG Processing 620/834 atomic regions from SNP 185727 to 186327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,515 DEBUG Processing 423/633 atomic regions from SNP 126618 to 127218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,536 DEBUG Processing 510/1000 atomic regions from SNP 152784 to 153384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,662 DEBUG Processing 66/221 atomic regions from SNP 19606 to 20207 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:57,710 DEBUG Processing 604/858 atomic regions from SNP 180971 to 181571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,728 DEBUG Processing 475/1109 atomic regions from SNP 142374 to 142974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,739 DEBUG Processing 424/633 atomic regions from SNP 126918 to 127518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,745 DEBUG Processing 621/834 atomic regions from SNP 186027 to 186627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,790 DEBUG Processing 511/1000 atomic regions from SNP 153084 to 153684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,871 DEBUG Processing 67/221 atomic regions from SNP 19907 to 20508 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:57,945 DEBUG Processing 605/858 atomic regions from SNP 181271 to 181871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,966 DEBUG Processing 425/633 atomic regions from SNP 127218 to 127818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,975 DEBUG Processing 622/834 atomic regions from SNP 186327 to 186927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,036 DEBUG Processing 476/1109 atomic regions from SNP 142674 to 143274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,060 DEBUG Processing 512/1000 atomic regions from SNP 153384 to 153984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,092 DEBUG Processing 68/221 atomic regions from SNP 20208 to 20809 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:58,177 DEBUG Processing 606/858 atomic regions from SNP 181571 to 182171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,193 DEBUG Processing 426/633 atomic regions from SNP 127518 to 128118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,201 DEBUG Processing 623/834 atomic regions from SNP 186627 to 187227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,315 DEBUG Processing 69/221 atomic regions from SNP 20509 to 21110 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:58,319 DEBUG Processing 477/1109 atomic regions from SNP 142974 to 143574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,338 DEBUG Processing 513/1000 atomic regions from SNP 153684 to 154284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,409 DEBUG Processing 607/858 atomic regions from SNP 181871 to 182471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,418 DEBUG Processing 427/633 atomic regions from SNP 127818 to 128418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,430 DEBUG Processing 624/834 atomic regions from SNP 186927 to 187527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,534 DEBUG Processing 70/221 atomic regions from SNP 20810 to 21411 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:58,574 DEBUG Processing 478/1109 atomic regions from SNP 143274 to 143874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,589 DEBUG Processing 514/1000 atomic regions from SNP 153984 to 154584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,636 DEBUG Processing 608/858 atomic regions from SNP 182171 to 182771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,637 DEBUG Processing 428/633 atomic regions from SNP 128118 to 128718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,666 DEBUG Processing 625/834 atomic regions from SNP 187227 to 187827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,753 DEBUG Processing 71/221 atomic regions from SNP 21111 to 21712 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:58,830 DEBUG Processing 479/1109 atomic regions from SNP 143574 to 144174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,854 DEBUG Processing 515/1000 atomic regions from SNP 154284 to 154884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,857 DEBUG Processing 429/633 atomic regions from SNP 128418 to 129018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,865 DEBUG Processing 609/858 atomic regions from SNP 182471 to 183071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,916 DEBUG Processing 626/834 atomic regions from SNP 187527 to 188127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,972 DEBUG Processing 72/221 atomic regions from SNP 21412 to 22013 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:59,095 DEBUG Processing 610/858 atomic regions from SNP 182771 to 183371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,100 DEBUG Processing 480/1109 atomic regions from SNP 143874 to 144474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,101 DEBUG Processing 430/633 atomic regions from SNP 128718 to 129318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,120 DEBUG Processing 516/1000 atomic regions from SNP 154584 to 155184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,150 DEBUG Processing 627/834 atomic regions from SNP 187827 to 188427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,192 DEBUG Processing 73/221 atomic regions from SNP 21713 to 22314 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:59,326 DEBUG Processing 611/858 atomic regions from SNP 183071 to 183671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,348 DEBUG Processing 431/633 atomic regions from SNP 129018 to 129618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,374 DEBUG Processing 517/1000 atomic regions from SNP 154884 to 155484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,378 DEBUG Processing 481/1109 atomic regions from SNP 144174 to 144774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,385 DEBUG Processing 628/834 atomic regions from SNP 188127 to 188727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,419 DEBUG Processing 74/221 atomic regions from SNP 22014 to 22615 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:59,555 DEBUG Processing 612/858 atomic regions from SNP 183371 to 183971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,579 DEBUG Processing 432/633 atomic regions from SNP 129318 to 129918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,621 DEBUG Processing 629/834 atomic regions from SNP 188427 to 189027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,630 DEBUG Processing 518/1000 atomic regions from SNP 155184 to 155784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,645 DEBUG Processing 482/1109 atomic regions from SNP 144474 to 145074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,647 DEBUG Processing 75/221 atomic regions from SNP 22315 to 22916 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:59,780 DEBUG Processing 613/858 atomic regions from SNP 183671 to 184271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,802 DEBUG Processing 433/633 atomic regions from SNP 129618 to 130218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,858 DEBUG Processing 630/834 atomic regions from SNP 188727 to 189327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,875 DEBUG Processing 76/221 atomic regions from SNP 22616 to 23217 for chrX (subchromosome 5 of 5). 2025-01-31 09:42:59,886 DEBUG Processing 519/1000 atomic regions from SNP 155484 to 156084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,929 DEBUG Processing 483/1109 atomic regions from SNP 144774 to 145374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,001 DEBUG Processing 614/858 atomic regions from SNP 183971 to 184571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,015 DEBUG Processing 434/633 atomic regions from SNP 129918 to 130518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,093 DEBUG Processing 631/834 atomic regions from SNP 189027 to 189627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,101 DEBUG Processing 77/221 atomic regions from SNP 22917 to 23518 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:00,144 DEBUG Processing 520/1000 atomic regions from SNP 155784 to 156384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,208 DEBUG Processing 484/1109 atomic regions from SNP 145074 to 145674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,229 DEBUG Processing 615/858 atomic regions from SNP 184271 to 184871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,231 DEBUG Processing 435/633 atomic regions from SNP 130218 to 130818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,321 DEBUG Processing 632/834 atomic regions from SNP 189327 to 189927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,321 DEBUG Processing 78/221 atomic regions from SNP 23218 to 23819 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:00,399 DEBUG Processing 521/1000 atomic regions from SNP 156084 to 156684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,452 DEBUG Processing 436/633 atomic regions from SNP 130518 to 131118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,463 DEBUG Processing 616/858 atomic regions from SNP 184571 to 185171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,479 DEBUG Processing 485/1109 atomic regions from SNP 145374 to 145974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,542 DEBUG Processing 79/221 atomic regions from SNP 23519 to 24120 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:00,551 DEBUG Processing 633/834 atomic regions from SNP 189627 to 190227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,649 DEBUG Processing 522/1000 atomic regions from SNP 156384 to 156984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,678 DEBUG Processing 437/633 atomic regions from SNP 130818 to 131418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,693 DEBUG Processing 617/858 atomic regions from SNP 184871 to 185471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,743 DEBUG Processing 486/1109 atomic regions from SNP 145674 to 146274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,764 DEBUG Processing 80/221 atomic regions from SNP 23820 to 24421 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:00,783 DEBUG Processing 634/834 atomic regions from SNP 189927 to 190527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,897 DEBUG Processing 523/1000 atomic regions from SNP 156684 to 157284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,897 DEBUG Processing 438/633 atomic regions from SNP 131118 to 131718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,924 DEBUG Processing 618/858 atomic regions from SNP 185171 to 185771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,988 DEBUG Processing 81/221 atomic regions from SNP 24121 to 24722 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:01,018 DEBUG Processing 635/834 atomic regions from SNP 190227 to 190827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,032 DEBUG Processing 487/1109 atomic regions from SNP 145974 to 146574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,116 DEBUG Processing 439/633 atomic regions from SNP 131418 to 132018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,148 DEBUG Processing 524/1000 atomic regions from SNP 156984 to 157584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,178 DEBUG Processing 619/858 atomic regions from SNP 185471 to 186071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,212 DEBUG Processing 82/221 atomic regions from SNP 24422 to 25023 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:01,252 DEBUG Processing 636/834 atomic regions from SNP 190527 to 191127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,293 DEBUG Processing 488/1109 atomic regions from SNP 146274 to 146874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,333 DEBUG Processing 440/633 atomic regions from SNP 131718 to 132318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,396 DEBUG Processing 525/1000 atomic regions from SNP 157284 to 157884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,423 DEBUG Processing 620/858 atomic regions from SNP 185771 to 186371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,434 DEBUG Processing 83/221 atomic regions from SNP 24723 to 25324 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:01,485 DEBUG Processing 637/834 atomic regions from SNP 190827 to 191427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,549 DEBUG Processing 441/633 atomic regions from SNP 132018 to 132618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,557 DEBUG Processing 489/1109 atomic regions from SNP 146574 to 147174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,648 DEBUG Processing 526/1000 atomic regions from SNP 157584 to 158184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,651 DEBUG Processing 84/221 atomic regions from SNP 25024 to 25625 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:01,666 DEBUG Processing 621/858 atomic regions from SNP 186071 to 186671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,711 DEBUG Processing 638/834 atomic regions from SNP 191127 to 191727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,765 DEBUG Processing 442/633 atomic regions from SNP 132318 to 132918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,814 DEBUG Processing 490/1109 atomic regions from SNP 146874 to 147474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,871 DEBUG Processing 85/221 atomic regions from SNP 25325 to 25926 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:01,890 DEBUG Processing 622/858 atomic regions from SNP 186371 to 186971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,899 DEBUG Processing 527/1000 atomic regions from SNP 157884 to 158484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,937 DEBUG Processing 639/834 atomic regions from SNP 191427 to 192027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,983 DEBUG Processing 443/633 atomic regions from SNP 132618 to 133218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,068 DEBUG Processing 491/1109 atomic regions from SNP 147174 to 147774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,095 DEBUG Processing 86/221 atomic regions from SNP 25626 to 26227 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:02,111 DEBUG Processing 623/858 atomic regions from SNP 186671 to 187271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,152 DEBUG Processing 528/1000 atomic regions from SNP 158184 to 158784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,167 DEBUG Processing 640/834 atomic regions from SNP 191727 to 192327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,200 DEBUG Processing 444/633 atomic regions from SNP 132918 to 133518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,320 DEBUG Processing 87/221 atomic regions from SNP 25927 to 26528 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:02,323 DEBUG Processing 492/1109 atomic regions from SNP 147474 to 148074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,333 DEBUG Processing 624/858 atomic regions from SNP 186971 to 187571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,410 DEBUG Processing 641/834 atomic regions from SNP 192027 to 192627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,418 DEBUG Processing 529/1000 atomic regions from SNP 158484 to 159084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,444 DEBUG Processing 445/633 atomic regions from SNP 133218 to 133818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,541 DEBUG Processing 88/221 atomic regions from SNP 26228 to 26829 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:02,554 DEBUG Processing 625/858 atomic regions from SNP 187271 to 187871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,579 DEBUG Processing 493/1109 atomic regions from SNP 147774 to 148374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,648 DEBUG Processing 642/834 atomic regions from SNP 192327 to 192927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,672 DEBUG Processing 446/633 atomic regions from SNP 133518 to 134118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,676 DEBUG Processing 530/1000 atomic regions from SNP 158784 to 159384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,752 DEBUG Processing 89/221 atomic regions from SNP 26529 to 27130 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:02,772 DEBUG Processing 626/858 atomic regions from SNP 187571 to 188171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,834 DEBUG Processing 494/1109 atomic regions from SNP 148074 to 148674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,878 DEBUG Processing 643/834 atomic regions from SNP 192627 to 193227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,888 DEBUG Processing 447/633 atomic regions from SNP 133818 to 134418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,934 DEBUG Processing 531/1000 atomic regions from SNP 159084 to 159684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,969 DEBUG Processing 90/221 atomic regions from SNP 26830 to 27431 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:02,989 DEBUG Processing 627/858 atomic regions from SNP 187871 to 188471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,083 DEBUG Processing 495/1109 atomic regions from SNP 148374 to 148974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,102 DEBUG Processing 448/633 atomic regions from SNP 134118 to 134718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,121 DEBUG Processing 644/834 atomic regions from SNP 192927 to 193527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,196 DEBUG Processing 532/1000 atomic regions from SNP 159384 to 159984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,198 DEBUG Processing 91/221 atomic regions from SNP 27131 to 27732 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:03,214 DEBUG Processing 628/858 atomic regions from SNP 188171 to 188771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,315 DEBUG Processing 449/633 atomic regions from SNP 134418 to 135018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,332 DEBUG Processing 496/1109 atomic regions from SNP 148674 to 149274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,345 DEBUG Processing 645/834 atomic regions from SNP 193227 to 193827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,423 DEBUG Processing 92/221 atomic regions from SNP 27432 to 28033 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:03,435 DEBUG Processing 629/858 atomic regions from SNP 188471 to 189071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,453 DEBUG Processing 533/1000 atomic regions from SNP 159684 to 160284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,529 DEBUG Processing 450/633 atomic regions from SNP 134718 to 135318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,580 DEBUG Processing 497/1109 atomic regions from SNP 148974 to 149574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,581 DEBUG Processing 646/834 atomic regions from SNP 193527 to 194127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,641 DEBUG Processing 93/221 atomic regions from SNP 27733 to 28334 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:03,658 DEBUG Processing 630/858 atomic regions from SNP 188771 to 189371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,701 DEBUG Processing 534/1000 atomic regions from SNP 159984 to 160584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,757 DEBUG Processing 451/633 atomic regions from SNP 135018 to 135618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,833 DEBUG Processing 647/834 atomic regions from SNP 193827 to 194427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,834 DEBUG Processing 498/1109 atomic regions from SNP 149274 to 149874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,856 DEBUG Processing 94/221 atomic regions from SNP 28034 to 28635 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:03,883 DEBUG Processing 631/858 atomic regions from SNP 189071 to 189671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,947 DEBUG Processing 535/1000 atomic regions from SNP 160284 to 160884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,973 DEBUG Processing 452/633 atomic regions from SNP 135318 to 135918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,072 DEBUG Processing 95/221 atomic regions from SNP 28335 to 28936 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:04,077 DEBUG Processing 648/834 atomic regions from SNP 194127 to 194727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,108 DEBUG Processing 632/858 atomic regions from SNP 189371 to 189971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,112 DEBUG Processing 499/1109 atomic regions from SNP 149574 to 150174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,194 DEBUG Processing 536/1000 atomic regions from SNP 160584 to 161184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,204 DEBUG Processing 453/633 atomic regions from SNP 135618 to 136218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,297 DEBUG Processing 96/221 atomic regions from SNP 28636 to 29237 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:04,307 DEBUG Processing 649/834 atomic regions from SNP 194427 to 195027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,337 DEBUG Processing 633/858 atomic regions from SNP 189671 to 190271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,391 DEBUG Processing 500/1109 atomic regions from SNP 149874 to 150474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,417 DEBUG Processing 454/633 atomic regions from SNP 135918 to 136518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,441 DEBUG Processing 537/1000 atomic regions from SNP 160884 to 161484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,522 DEBUG Processing 97/221 atomic regions from SNP 28937 to 29538 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:04,549 DEBUG Processing 650/834 atomic regions from SNP 194727 to 195327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,562 DEBUG Processing 634/858 atomic regions from SNP 189971 to 190571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,631 DEBUG Processing 455/633 atomic regions from SNP 136218 to 136818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,648 DEBUG Processing 501/1109 atomic regions from SNP 150174 to 150774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,686 DEBUG Processing 538/1000 atomic regions from SNP 161184 to 161784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,746 DEBUG Processing 98/221 atomic regions from SNP 29238 to 29839 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:04,784 DEBUG Processing 635/858 atomic regions from SNP 190271 to 190871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,805 DEBUG Processing 651/834 atomic regions from SNP 195027 to 195627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,845 DEBUG Processing 456/633 atomic regions from SNP 136518 to 137118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,902 DEBUG Processing 502/1109 atomic regions from SNP 150474 to 151074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,930 DEBUG Processing 539/1000 atomic regions from SNP 161484 to 162084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,963 DEBUG Processing 99/221 atomic regions from SNP 29539 to 30140 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:05,003 DEBUG Processing 636/858 atomic regions from SNP 190571 to 191171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,037 DEBUG Processing 652/834 atomic regions from SNP 195327 to 195927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,056 DEBUG Processing 457/633 atomic regions from SNP 136818 to 137418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,157 DEBUG Processing 503/1109 atomic regions from SNP 150774 to 151374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,175 DEBUG Processing 540/1000 atomic regions from SNP 161784 to 162384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,179 DEBUG Processing 100/221 atomic regions from SNP 29840 to 30441 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:05,225 DEBUG Processing 637/858 atomic regions from SNP 190871 to 191471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,266 DEBUG Processing 458/633 atomic regions from SNP 137118 to 137718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,270 DEBUG Processing 653/834 atomic regions from SNP 195627 to 196227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,395 DEBUG Processing 101/221 atomic regions from SNP 30141 to 30742 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:05,412 DEBUG Processing 504/1109 atomic regions from SNP 151074 to 151674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,422 DEBUG Processing 541/1000 atomic regions from SNP 162084 to 162684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,451 DEBUG Processing 638/858 atomic regions from SNP 191171 to 191771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,500 DEBUG Processing 459/633 atomic regions from SNP 137418 to 138018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,503 DEBUG Processing 654/834 atomic regions from SNP 195927 to 196527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,611 DEBUG Processing 102/221 atomic regions from SNP 30442 to 31043 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:05,667 DEBUG Processing 542/1000 atomic regions from SNP 162384 to 162984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,669 DEBUG Processing 505/1109 atomic regions from SNP 151374 to 151974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,677 DEBUG Processing 639/858 atomic regions from SNP 191471 to 192071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,737 DEBUG Processing 460/633 atomic regions from SNP 137718 to 138318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,745 DEBUG Processing 655/834 atomic regions from SNP 196227 to 196827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,829 DEBUG Processing 103/221 atomic regions from SNP 30743 to 31344 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:05,904 DEBUG Processing 640/858 atomic regions from SNP 191771 to 192371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,913 DEBUG Processing 543/1000 atomic regions from SNP 162684 to 163284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,950 DEBUG Processing 506/1109 atomic regions from SNP 151674 to 152274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,961 DEBUG Processing 461/633 atomic regions from SNP 138018 to 138618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,976 DEBUG Processing 656/834 atomic regions from SNP 196527 to 197127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,044 DEBUG Processing 104/221 atomic regions from SNP 31044 to 31645 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:06,128 DEBUG Processing 641/858 atomic regions from SNP 192071 to 192671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,162 DEBUG Processing 544/1000 atomic regions from SNP 162984 to 163584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,185 DEBUG Processing 462/633 atomic regions from SNP 138318 to 138918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,217 DEBUG Processing 657/834 atomic regions from SNP 196827 to 197427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,237 DEBUG Processing 507/1109 atomic regions from SNP 151974 to 152574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,259 DEBUG Processing 105/221 atomic regions from SNP 31345 to 31946 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:06,345 DEBUG Processing 642/858 atomic regions from SNP 192371 to 192971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,405 DEBUG Processing 463/633 atomic regions from SNP 138618 to 139218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,412 DEBUG Processing 545/1000 atomic regions from SNP 163284 to 163884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,470 DEBUG Processing 658/834 atomic regions from SNP 197127 to 197727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,479 DEBUG Processing 106/221 atomic regions from SNP 31646 to 32247 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:06,512 DEBUG Processing 508/1109 atomic regions from SNP 152274 to 152874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,559 DEBUG Processing 643/858 atomic regions from SNP 192671 to 193271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,616 DEBUG Processing 464/633 atomic regions from SNP 138918 to 139518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,660 DEBUG Processing 546/1000 atomic regions from SNP 163584 to 164184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,699 DEBUG Processing 107/221 atomic regions from SNP 31947 to 32548 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:06,709 DEBUG Processing 659/834 atomic regions from SNP 197427 to 198027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,771 DEBUG Processing 509/1109 atomic regions from SNP 152574 to 153174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,777 DEBUG Processing 644/858 atomic regions from SNP 192971 to 193571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,823 DEBUG Processing 465/633 atomic regions from SNP 139218 to 139818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,905 DEBUG Processing 547/1000 atomic regions from SNP 163884 to 164484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,920 DEBUG Processing 108/221 atomic regions from SNP 32248 to 32849 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:06,951 DEBUG Processing 660/834 atomic regions from SNP 197727 to 198327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,005 DEBUG Processing 645/858 atomic regions from SNP 193271 to 193871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,034 DEBUG Processing 510/1109 atomic regions from SNP 152874 to 153474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,038 DEBUG Processing 466/633 atomic regions from SNP 139518 to 140118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,138 DEBUG Processing 109/221 atomic regions from SNP 32549 to 33150 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:07,152 DEBUG Processing 548/1000 atomic regions from SNP 164184 to 164784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,195 DEBUG Processing 661/834 atomic regions from SNP 198027 to 198627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,235 DEBUG Processing 646/858 atomic regions from SNP 193571 to 194171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,259 DEBUG Processing 467/633 atomic regions from SNP 139818 to 140418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,303 DEBUG Processing 511/1109 atomic regions from SNP 153174 to 153774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,353 DEBUG Processing 110/221 atomic regions from SNP 32850 to 33451 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:07,397 DEBUG Processing 549/1000 atomic regions from SNP 164484 to 165084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,447 DEBUG Processing 662/834 atomic regions from SNP 198327 to 198927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,481 DEBUG Processing 468/633 atomic regions from SNP 140118 to 140718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,483 DEBUG Processing 647/858 atomic regions from SNP 193871 to 194471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,563 DEBUG Processing 111/221 atomic regions from SNP 33151 to 33752 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:07,567 DEBUG Processing 512/1109 atomic regions from SNP 153474 to 154074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,641 DEBUG Processing 550/1000 atomic regions from SNP 164784 to 165384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,703 DEBUG Processing 469/633 atomic regions from SNP 140418 to 141018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,703 DEBUG Processing 663/834 atomic regions from SNP 198627 to 199227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,733 DEBUG Processing 648/858 atomic regions from SNP 194171 to 194771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,775 DEBUG Processing 112/221 atomic regions from SNP 33452 to 34053 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:07,818 DEBUG Processing 513/1109 atomic regions from SNP 153774 to 154374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,885 DEBUG Processing 551/1000 atomic regions from SNP 165084 to 165684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,922 DEBUG Processing 470/633 atomic regions from SNP 140718 to 141318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,942 DEBUG Processing 664/834 atomic regions from SNP 198927 to 199527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,960 DEBUG Processing 649/858 atomic regions from SNP 194471 to 195071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,989 DEBUG Processing 113/221 atomic regions from SNP 33753 to 34354 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:08,068 DEBUG Processing 514/1109 atomic regions from SNP 154074 to 154674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,134 DEBUG Processing 552/1000 atomic regions from SNP 165384 to 165984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,141 DEBUG Processing 471/633 atomic regions from SNP 141018 to 141618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,181 DEBUG Processing 665/834 atomic regions from SNP 199227 to 199827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,193 DEBUG Processing 650/858 atomic regions from SNP 194771 to 195371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,217 DEBUG Processing 114/221 atomic regions from SNP 34054 to 34655 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:08,325 DEBUG Processing 515/1109 atomic regions from SNP 154374 to 154974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,359 DEBUG Processing 472/633 atomic regions from SNP 141318 to 141918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,383 DEBUG Processing 553/1000 atomic regions from SNP 165684 to 166284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,407 DEBUG Processing 666/834 atomic regions from SNP 199527 to 200127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,417 DEBUG Processing 651/858 atomic regions from SNP 195071 to 195671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,437 DEBUG Processing 115/221 atomic regions from SNP 34355 to 34956 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:08,576 DEBUG Processing 473/633 atomic regions from SNP 141618 to 142218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,599 DEBUG Processing 516/1109 atomic regions from SNP 154674 to 155274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,633 DEBUG Processing 554/1000 atomic regions from SNP 165984 to 166584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,641 DEBUG Processing 652/858 atomic regions from SNP 195371 to 195971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,641 DEBUG Processing 667/834 atomic regions from SNP 199827 to 200427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,656 DEBUG Processing 116/221 atomic regions from SNP 34656 to 35257 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:08,791 DEBUG Processing 474/633 atomic regions from SNP 141918 to 142518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,869 DEBUG Processing 517/1109 atomic regions from SNP 154974 to 155574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,876 DEBUG Processing 117/221 atomic regions from SNP 34957 to 35558 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:08,877 DEBUG Processing 653/858 atomic regions from SNP 195671 to 196271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,882 DEBUG Processing 555/1000 atomic regions from SNP 166284 to 166884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,891 DEBUG Processing 668/834 atomic regions from SNP 200127 to 200727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,001 DEBUG Processing 475/633 atomic regions from SNP 142218 to 142818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,098 DEBUG Processing 118/221 atomic regions from SNP 35258 to 35859 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:09,129 DEBUG Processing 654/858 atomic regions from SNP 195971 to 196571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,135 DEBUG Processing 556/1000 atomic regions from SNP 166584 to 167184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,138 DEBUG Processing 518/1109 atomic regions from SNP 155274 to 155874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,144 DEBUG Processing 669/834 atomic regions from SNP 200427 to 201027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,214 DEBUG Processing 476/633 atomic regions from SNP 142518 to 143118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,316 DEBUG Processing 119/221 atomic regions from SNP 35559 to 36160 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:09,355 DEBUG Processing 655/858 atomic regions from SNP 196271 to 196871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,390 DEBUG Processing 670/834 atomic regions from SNP 200727 to 201327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,394 DEBUG Processing 557/1000 atomic regions from SNP 166884 to 167484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,424 DEBUG Processing 519/1109 atomic regions from SNP 155574 to 156174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,442 DEBUG Processing 477/633 atomic regions from SNP 142818 to 143418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,528 DEBUG Processing 120/221 atomic regions from SNP 35860 to 36461 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:09,576 DEBUG Processing 656/858 atomic regions from SNP 196571 to 197171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,653 DEBUG Processing 558/1000 atomic regions from SNP 167184 to 167784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,654 DEBUG Processing 671/834 atomic regions from SNP 201027 to 201627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,677 DEBUG Processing 478/633 atomic regions from SNP 143118 to 143718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,697 DEBUG Processing 520/1109 atomic regions from SNP 155874 to 156474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,739 DEBUG Processing 121/221 atomic regions from SNP 36161 to 36762 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:09,793 DEBUG Processing 657/858 atomic regions from SNP 196871 to 197471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,903 DEBUG Processing 672/834 atomic regions from SNP 201327 to 201927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,910 DEBUG Processing 559/1000 atomic regions from SNP 167484 to 168084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,914 DEBUG Processing 479/633 atomic regions from SNP 143418 to 144018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,952 DEBUG Processing 122/221 atomic regions from SNP 36462 to 37063 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:09,979 DEBUG Processing 521/1109 atomic regions from SNP 156174 to 156774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,029 DEBUG Processing 658/858 atomic regions from SNP 197171 to 197771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,139 DEBUG Processing 480/633 atomic regions from SNP 143718 to 144318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,151 DEBUG Processing 673/834 atomic regions from SNP 201627 to 202227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,166 DEBUG Processing 560/1000 atomic regions from SNP 167784 to 168384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,173 DEBUG Processing 123/221 atomic regions from SNP 36763 to 37364 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:10,252 DEBUG Processing 659/858 atomic regions from SNP 197471 to 198071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,267 DEBUG Processing 522/1109 atomic regions from SNP 156474 to 157074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,380 DEBUG Processing 481/633 atomic regions from SNP 144018 to 144618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,386 DEBUG Processing 674/834 atomic regions from SNP 201927 to 202527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,398 DEBUG Processing 124/221 atomic regions from SNP 37064 to 37665 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:10,424 DEBUG Processing 561/1000 atomic regions from SNP 168084 to 168684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,480 DEBUG Processing 660/858 atomic regions from SNP 197771 to 198371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,526 DEBUG Processing 523/1109 atomic regions from SNP 156774 to 157374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,604 DEBUG Processing 482/633 atomic regions from SNP 144318 to 144918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,616 DEBUG Processing 675/834 atomic regions from SNP 202227 to 202827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,619 DEBUG Processing 125/221 atomic regions from SNP 37365 to 37966 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:10,673 DEBUG Processing 562/1000 atomic regions from SNP 168384 to 168984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,709 DEBUG Processing 661/858 atomic regions from SNP 198071 to 198671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,783 DEBUG Processing 524/1109 atomic regions from SNP 157074 to 157674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,819 DEBUG Processing 483/633 atomic regions from SNP 144618 to 145218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,837 DEBUG Processing 126/221 atomic regions from SNP 37666 to 38267 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:10,862 DEBUG Processing 676/834 atomic regions from SNP 202527 to 203127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,922 DEBUG Processing 563/1000 atomic regions from SNP 168684 to 169284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,932 DEBUG Processing 662/858 atomic regions from SNP 198371 to 198971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,034 DEBUG Processing 484/633 atomic regions from SNP 144918 to 145518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,042 DEBUG Processing 525/1109 atomic regions from SNP 157374 to 157974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,052 DEBUG Processing 127/221 atomic regions from SNP 37967 to 38568 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:11,116 DEBUG Processing 677/834 atomic regions from SNP 202827 to 203427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,150 DEBUG Processing 663/858 atomic regions from SNP 198671 to 199271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,168 DEBUG Processing 564/1000 atomic regions from SNP 168984 to 169584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,253 DEBUG Processing 485/633 atomic regions from SNP 145218 to 145818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,267 DEBUG Processing 128/221 atomic regions from SNP 38268 to 38869 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:11,302 DEBUG Processing 526/1109 atomic regions from SNP 157674 to 158274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,336 DEBUG Processing 678/834 atomic regions from SNP 203127 to 203727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,367 DEBUG Processing 664/858 atomic regions from SNP 198971 to 199571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,417 DEBUG Processing 565/1000 atomic regions from SNP 169284 to 169884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,473 DEBUG Processing 486/633 atomic regions from SNP 145518 to 146118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,484 DEBUG Processing 129/221 atomic regions from SNP 38569 to 39170 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:11,558 DEBUG Processing 679/834 atomic regions from SNP 203427 to 204027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,563 DEBUG Processing 527/1109 atomic regions from SNP 157974 to 158574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,587 DEBUG Processing 665/858 atomic regions from SNP 199271 to 199871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,663 DEBUG Processing 566/1000 atomic regions from SNP 169584 to 170184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,691 DEBUG Processing 487/633 atomic regions from SNP 145818 to 146418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,703 DEBUG Processing 130/221 atomic regions from SNP 38870 to 39471 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:11,780 DEBUG Processing 680/834 atomic regions from SNP 203727 to 204327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,813 DEBUG Processing 666/858 atomic regions from SNP 199571 to 200171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,826 DEBUG Processing 528/1109 atomic regions from SNP 158274 to 158874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,903 DEBUG Processing 488/633 atomic regions from SNP 146118 to 146718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,914 DEBUG Processing 567/1000 atomic regions from SNP 169884 to 170484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,921 DEBUG Processing 131/221 atomic regions from SNP 39171 to 39772 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:12,003 DEBUG Processing 681/834 atomic regions from SNP 204027 to 204627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,041 DEBUG Processing 667/858 atomic regions from SNP 199871 to 200471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,089 DEBUG Processing 529/1109 atomic regions from SNP 158574 to 159174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,116 DEBUG Processing 489/633 atomic regions from SNP 146418 to 147018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,141 DEBUG Processing 132/221 atomic regions from SNP 39472 to 40073 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:12,165 DEBUG Processing 568/1000 atomic regions from SNP 170184 to 170784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,229 DEBUG Processing 682/834 atomic regions from SNP 204327 to 204927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,270 DEBUG Processing 668/858 atomic regions from SNP 200171 to 200771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,333 DEBUG Processing 490/633 atomic regions from SNP 146718 to 147318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,352 DEBUG Processing 530/1109 atomic regions from SNP 158874 to 159474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,357 DEBUG Processing 133/221 atomic regions from SNP 39773 to 40374 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:12,419 DEBUG Processing 569/1000 atomic regions from SNP 170484 to 171084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,454 DEBUG Processing 683/834 atomic regions from SNP 204627 to 205227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,492 DEBUG Processing 669/858 atomic regions from SNP 200471 to 201071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,552 DEBUG Processing 491/633 atomic regions from SNP 147018 to 147618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,570 DEBUG Processing 134/221 atomic regions from SNP 40074 to 40675 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:12,609 DEBUG Processing 531/1109 atomic regions from SNP 159174 to 159774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,671 DEBUG Processing 570/1000 atomic regions from SNP 170784 to 171384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,683 DEBUG Processing 684/834 atomic regions from SNP 204927 to 205527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,716 DEBUG Processing 670/858 atomic regions from SNP 200771 to 201371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,769 DEBUG Processing 492/633 atomic regions from SNP 147318 to 147918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,784 DEBUG Processing 135/221 atomic regions from SNP 40375 to 40976 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:12,867 DEBUG Processing 532/1109 atomic regions from SNP 159474 to 160074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,909 DEBUG Processing 685/834 atomic regions from SNP 205227 to 205827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,924 DEBUG Processing 571/1000 atomic regions from SNP 171084 to 171684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,943 DEBUG Processing 671/858 atomic regions from SNP 201071 to 201671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,984 DEBUG Processing 493/633 atomic regions from SNP 147618 to 148218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,996 DEBUG Processing 136/221 atomic regions from SNP 40676 to 41277 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:13,120 DEBUG Processing 533/1109 atomic regions from SNP 159774 to 160374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,135 DEBUG Processing 686/834 atomic regions from SNP 205527 to 206127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,169 DEBUG Processing 672/858 atomic regions from SNP 201371 to 201971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,173 DEBUG Processing 572/1000 atomic regions from SNP 171384 to 171984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,208 DEBUG Processing 137/221 atomic regions from SNP 40977 to 41578 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:13,224 DEBUG Processing 494/633 atomic regions from SNP 147918 to 148518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,357 DEBUG Processing 687/834 atomic regions from SNP 205827 to 206427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,377 DEBUG Processing 534/1109 atomic regions from SNP 160074 to 160674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,396 DEBUG Processing 673/858 atomic regions from SNP 201671 to 202271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,427 DEBUG Processing 138/221 atomic regions from SNP 41278 to 41879 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:13,428 DEBUG Processing 573/1000 atomic regions from SNP 171684 to 172284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,457 DEBUG Processing 495/633 atomic regions from SNP 148218 to 148818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,583 DEBUG Processing 688/834 atomic regions from SNP 206127 to 206727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,623 DEBUG Processing 674/858 atomic regions from SNP 201971 to 202571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,637 DEBUG Processing 535/1109 atomic regions from SNP 160374 to 160974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,643 DEBUG Processing 139/221 atomic regions from SNP 41579 to 42180 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:13,676 DEBUG Processing 574/1000 atomic regions from SNP 171984 to 172584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,701 DEBUG Processing 496/633 atomic regions from SNP 148518 to 149118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,808 DEBUG Processing 689/834 atomic regions from SNP 206427 to 207027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,849 DEBUG Processing 675/858 atomic regions from SNP 202271 to 202871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,858 DEBUG Processing 140/221 atomic regions from SNP 41880 to 42481 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:13,899 DEBUG Processing 536/1109 atomic regions from SNP 160674 to 161274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,935 DEBUG Processing 575/1000 atomic regions from SNP 172284 to 172884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,950 DEBUG Processing 497/633 atomic regions from SNP 148818 to 149418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,033 DEBUG Processing 690/834 atomic regions from SNP 206727 to 207327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,075 DEBUG Processing 141/221 atomic regions from SNP 42181 to 42782 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:14,077 DEBUG Processing 676/858 atomic regions from SNP 202571 to 203171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,162 DEBUG Processing 537/1109 atomic regions from SNP 160974 to 161574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,192 DEBUG Processing 576/1000 atomic regions from SNP 172584 to 173184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,195 DEBUG Processing 498/633 atomic regions from SNP 149118 to 149718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,258 DEBUG Processing 691/834 atomic regions from SNP 207027 to 207627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,292 DEBUG Processing 142/221 atomic regions from SNP 42482 to 43083 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:14,302 DEBUG Processing 677/858 atomic regions from SNP 202871 to 203471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,425 DEBUG Processing 538/1109 atomic regions from SNP 161274 to 161874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,436 DEBUG Processing 499/633 atomic regions from SNP 149418 to 150018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,462 DEBUG Processing 577/1000 atomic regions from SNP 172884 to 173484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,485 DEBUG Processing 692/834 atomic regions from SNP 207327 to 207927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,513 DEBUG Processing 143/221 atomic regions from SNP 42783 to 43384 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:14,527 DEBUG Processing 678/858 atomic regions from SNP 203171 to 203771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,655 DEBUG Processing 500/633 atomic regions from SNP 149718 to 150318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,685 DEBUG Processing 539/1109 atomic regions from SNP 161574 to 162174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,709 DEBUG Processing 693/834 atomic regions from SNP 207627 to 208227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,720 DEBUG Processing 578/1000 atomic regions from SNP 173184 to 173784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,732 DEBUG Processing 144/221 atomic regions from SNP 43084 to 43685 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:14,747 DEBUG Processing 679/858 atomic regions from SNP 203471 to 204071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,891 DEBUG Processing 501/633 atomic regions from SNP 150018 to 150618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,932 DEBUG Processing 694/834 atomic regions from SNP 207927 to 208527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,946 DEBUG Processing 145/221 atomic regions from SNP 43385 to 43986 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:14,947 DEBUG Processing 540/1109 atomic regions from SNP 161874 to 162474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,965 DEBUG Processing 579/1000 atomic regions from SNP 173484 to 174084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,976 DEBUG Processing 680/858 atomic regions from SNP 203771 to 204371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,127 DEBUG Processing 502/633 atomic regions from SNP 150318 to 150918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,161 DEBUG Processing 695/834 atomic regions from SNP 208227 to 208827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,165 DEBUG Processing 146/221 atomic regions from SNP 43686 to 44287 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:15,208 DEBUG Processing 681/858 atomic regions from SNP 204071 to 204671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,212 DEBUG Processing 580/1000 atomic regions from SNP 173784 to 174384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,213 DEBUG Processing 541/1109 atomic regions from SNP 162174 to 162774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,365 DEBUG Processing 503/633 atomic regions from SNP 150618 to 151218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,386 DEBUG Processing 147/221 atomic regions from SNP 43987 to 44588 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:15,390 DEBUG Processing 696/834 atomic regions from SNP 208527 to 209127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,443 DEBUG Processing 682/858 atomic regions from SNP 204371 to 204971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,457 DEBUG Processing 581/1000 atomic regions from SNP 174084 to 174684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,480 DEBUG Processing 542/1109 atomic regions from SNP 162474 to 163074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,606 DEBUG Processing 504/633 atomic regions from SNP 150918 to 151518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,608 DEBUG Processing 148/221 atomic regions from SNP 44288 to 44889 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:15,624 DEBUG Processing 697/834 atomic regions from SNP 208827 to 209427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,676 DEBUG Processing 683/858 atomic regions from SNP 204671 to 205271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,707 DEBUG Processing 582/1000 atomic regions from SNP 174384 to 174984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,738 DEBUG Processing 543/1109 atomic regions from SNP 162774 to 163374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,831 DEBUG Processing 149/221 atomic regions from SNP 44589 to 45190 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:15,842 DEBUG Processing 505/633 atomic regions from SNP 151218 to 151818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,858 DEBUG Processing 698/834 atomic regions from SNP 209127 to 209727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,911 DEBUG Processing 684/858 atomic regions from SNP 204971 to 205571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,945 DEBUG Processing 583/1000 atomic regions from SNP 174684 to 175284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,985 DEBUG Processing 544/1109 atomic regions from SNP 163074 to 163674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,051 DEBUG Processing 150/221 atomic regions from SNP 44890 to 45491 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:16,089 DEBUG Processing 699/834 atomic regions from SNP 209427 to 210027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,089 DEBUG Processing 506/633 atomic regions from SNP 151518 to 152118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,160 DEBUG Processing 685/858 atomic regions from SNP 205271 to 205871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,189 DEBUG Processing 584/1000 atomic regions from SNP 174984 to 175584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,239 DEBUG Processing 545/1109 atomic regions from SNP 163374 to 163974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,265 DEBUG Processing 151/221 atomic regions from SNP 45191 to 45792 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:16,316 DEBUG Processing 700/834 atomic regions from SNP 209727 to 210327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,327 DEBUG Processing 507/633 atomic regions from SNP 151818 to 152418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,396 DEBUG Processing 686/858 atomic regions from SNP 205571 to 206171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,432 DEBUG Processing 585/1000 atomic regions from SNP 175284 to 175884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,476 DEBUG Processing 152/221 atomic regions from SNP 45492 to 46093 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:16,490 DEBUG Processing 546/1109 atomic regions from SNP 163674 to 164274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,539 DEBUG Processing 701/834 atomic regions from SNP 210027 to 210627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,556 DEBUG Processing 508/633 atomic regions from SNP 152118 to 152718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,639 DEBUG Processing 687/858 atomic regions from SNP 205871 to 206471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,683 DEBUG Processing 586/1000 atomic regions from SNP 175584 to 176184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,690 DEBUG Processing 153/221 atomic regions from SNP 45793 to 46394 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:16,744 DEBUG Processing 547/1109 atomic regions from SNP 163974 to 164574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,760 DEBUG Processing 702/834 atomic regions from SNP 210327 to 210927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,794 DEBUG Processing 509/633 atomic regions from SNP 152418 to 153018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,863 DEBUG Processing 688/858 atomic regions from SNP 206171 to 206771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,909 DEBUG Processing 154/221 atomic regions from SNP 46094 to 46695 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:16,932 DEBUG Processing 587/1000 atomic regions from SNP 175884 to 176484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,998 DEBUG Processing 548/1109 atomic regions from SNP 164274 to 164874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,000 DEBUG Processing 703/834 atomic regions from SNP 210627 to 211227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,031 DEBUG Processing 510/633 atomic regions from SNP 152718 to 153318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,084 DEBUG Processing 689/858 atomic regions from SNP 206471 to 207071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,129 DEBUG Processing 155/221 atomic regions from SNP 46395 to 46996 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:17,185 DEBUG Processing 588/1000 atomic regions from SNP 176184 to 176784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,248 DEBUG Processing 704/834 atomic regions from SNP 210927 to 211527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,255 DEBUG Processing 549/1109 atomic regions from SNP 164574 to 165174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,279 DEBUG Processing 511/633 atomic regions from SNP 153018 to 153618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,303 DEBUG Processing 690/858 atomic regions from SNP 206771 to 207371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,345 DEBUG Processing 156/221 atomic regions from SNP 46696 to 47297 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:17,435 DEBUG Processing 589/1000 atomic regions from SNP 176484 to 177084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,492 DEBUG Processing 705/834 atomic regions from SNP 211227 to 211827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,511 DEBUG Processing 550/1109 atomic regions from SNP 164874 to 165474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,520 DEBUG Processing 512/633 atomic regions from SNP 153318 to 153918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,522 DEBUG Processing 691/858 atomic regions from SNP 207071 to 207671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,556 DEBUG Processing 157/221 atomic regions from SNP 46997 to 47598 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:17,684 DEBUG Processing 590/1000 atomic regions from SNP 176784 to 177384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,730 DEBUG Processing 706/834 atomic regions from SNP 211527 to 212127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,743 DEBUG Processing 692/858 atomic regions from SNP 207371 to 207971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,766 DEBUG Processing 158/221 atomic regions from SNP 47298 to 47899 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:17,766 DEBUG Processing 551/1109 atomic regions from SNP 165174 to 165774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,771 DEBUG Processing 513/633 atomic regions from SNP 153618 to 154218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,927 DEBUG Processing 591/1000 atomic regions from SNP 177084 to 177684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,961 DEBUG Processing 707/834 atomic regions from SNP 211827 to 212427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,972 DEBUG Processing 693/858 atomic regions from SNP 207671 to 208271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,983 DEBUG Processing 159/221 atomic regions from SNP 47599 to 48200 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:18,018 DEBUG Processing 514/633 atomic regions from SNP 153918 to 154518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,026 DEBUG Processing 552/1109 atomic regions from SNP 165474 to 166074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,181 DEBUG Processing 592/1000 atomic regions from SNP 177384 to 177984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,198 DEBUG Processing 708/834 atomic regions from SNP 212127 to 212727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,206 DEBUG Processing 694/858 atomic regions from SNP 207971 to 208571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,213 DEBUG Processing 160/221 atomic regions from SNP 47900 to 48501 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:18,244 DEBUG Processing 515/633 atomic regions from SNP 154218 to 154818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,289 DEBUG Processing 553/1109 atomic regions from SNP 165774 to 166374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,439 DEBUG Processing 709/834 atomic regions from SNP 212427 to 213027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,443 DEBUG Processing 593/1000 atomic regions from SNP 177684 to 178284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,443 DEBUG Processing 695/858 atomic regions from SNP 208271 to 208871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,445 DEBUG Processing 161/221 atomic regions from SNP 48201 to 48802 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:18,492 DEBUG Processing 516/633 atomic regions from SNP 154518 to 155118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,544 DEBUG Processing 554/1109 atomic regions from SNP 166074 to 166674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,674 DEBUG Processing 710/834 atomic regions from SNP 212727 to 213327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,675 DEBUG Processing 162/221 atomic regions from SNP 48502 to 49103 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:18,676 DEBUG Processing 696/858 atomic regions from SNP 208571 to 209171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,703 DEBUG Processing 594/1000 atomic regions from SNP 177984 to 178584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,740 DEBUG Processing 517/633 atomic regions from SNP 154818 to 155418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,797 DEBUG Processing 555/1109 atomic regions from SNP 166374 to 166974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,897 DEBUG Processing 163/221 atomic regions from SNP 48803 to 49404 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:18,903 DEBUG Processing 711/834 atomic regions from SNP 213027 to 213627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,923 DEBUG Processing 697/858 atomic regions from SNP 208871 to 209471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,959 DEBUG Processing 595/1000 atomic regions from SNP 178284 to 178884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,980 DEBUG Processing 518/633 atomic regions from SNP 155118 to 155718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,055 DEBUG Processing 556/1109 atomic regions from SNP 166674 to 167274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,113 DEBUG Processing 164/221 atomic regions from SNP 49104 to 49705 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:19,128 DEBUG Processing 712/834 atomic regions from SNP 213327 to 213927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,162 DEBUG Processing 698/858 atomic regions from SNP 209171 to 209771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,212 DEBUG Processing 596/1000 atomic regions from SNP 178584 to 179184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,214 DEBUG Processing 519/633 atomic regions from SNP 155418 to 156018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,316 DEBUG Processing 557/1109 atomic regions from SNP 166974 to 167574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,331 DEBUG Processing 165/221 atomic regions from SNP 49405 to 50006 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:19,355 DEBUG Processing 713/834 atomic regions from SNP 213627 to 214227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,394 DEBUG Processing 699/858 atomic regions from SNP 209471 to 210071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,459 DEBUG Processing 597/1000 atomic regions from SNP 178884 to 179484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,461 DEBUG Processing 520/633 atomic regions from SNP 155718 to 156318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,552 DEBUG Processing 166/221 atomic regions from SNP 49706 to 50307 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:19,574 DEBUG Processing 558/1109 atomic regions from SNP 167274 to 167874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,586 DEBUG Processing 714/834 atomic regions from SNP 213927 to 214527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,624 DEBUG Processing 700/858 atomic regions from SNP 209771 to 210371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,698 DEBUG Processing 521/633 atomic regions from SNP 156018 to 156618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,708 DEBUG Processing 598/1000 atomic regions from SNP 179184 to 179784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,774 DEBUG Processing 167/221 atomic regions from SNP 50007 to 50608 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:19,819 DEBUG Processing 715/834 atomic regions from SNP 214227 to 214827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,832 DEBUG Processing 559/1109 atomic regions from SNP 167574 to 168174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,845 DEBUG Processing 701/858 atomic regions from SNP 210071 to 210671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,933 DEBUG Processing 522/633 atomic regions from SNP 156318 to 156918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,953 DEBUG Processing 599/1000 atomic regions from SNP 179484 to 180084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,989 DEBUG Processing 168/221 atomic regions from SNP 50308 to 50909 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,049 DEBUG Processing 716/834 atomic regions from SNP 214527 to 215127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,072 DEBUG Processing 702/858 atomic regions from SNP 210371 to 210971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,090 DEBUG Processing 560/1109 atomic regions from SNP 167874 to 168474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,168 DEBUG Processing 523/633 atomic regions from SNP 156618 to 157218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,202 DEBUG Processing 169/221 atomic regions from SNP 50609 to 51210 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,205 DEBUG Processing 600/1000 atomic regions from SNP 179784 to 180384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,272 DEBUG Processing 717/834 atomic regions from SNP 214827 to 215427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,299 DEBUG Processing 703/858 atomic regions from SNP 210671 to 211271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,353 DEBUG Processing 561/1109 atomic regions from SNP 168174 to 168774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,387 DEBUG Processing 524/633 atomic regions from SNP 156918 to 157518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,421 DEBUG Processing 170/221 atomic regions from SNP 50910 to 51511 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,455 DEBUG Processing 601/1000 atomic regions from SNP 180084 to 180684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,490 DEBUG Processing 718/834 atomic regions from SNP 215127 to 215727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,526 DEBUG Processing 704/858 atomic regions from SNP 210971 to 211571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,612 DEBUG Processing 525/633 atomic regions from SNP 157218 to 157818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,616 DEBUG Processing 562/1109 atomic regions from SNP 168474 to 169074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,646 DEBUG Processing 171/221 atomic regions from SNP 51211 to 51812 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,709 DEBUG Processing 602/1000 atomic regions from SNP 180384 to 180984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,712 DEBUG Processing 719/834 atomic regions from SNP 215427 to 216027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,761 DEBUG Processing 705/858 atomic regions from SNP 211271 to 211871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,837 DEBUG Processing 526/633 atomic regions from SNP 157518 to 158118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,872 DEBUG Processing 172/221 atomic regions from SNP 51512 to 52113 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:20,881 DEBUG Processing 563/1109 atomic regions from SNP 168774 to 169374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,943 DEBUG Processing 720/834 atomic regions from SNP 215727 to 216327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,962 DEBUG Processing 603/1000 atomic regions from SNP 180684 to 181284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,975 DEBUG Processing 706/858 atomic regions from SNP 211571 to 212171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,053 DEBUG Processing 527/633 atomic regions from SNP 157818 to 158418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,092 DEBUG Processing 173/221 atomic regions from SNP 51813 to 52414 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:21,138 DEBUG Processing 564/1109 atomic regions from SNP 169074 to 169674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,176 DEBUG Processing 721/834 atomic regions from SNP 216027 to 216627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,195 DEBUG Processing 707/858 atomic regions from SNP 211871 to 212471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,216 DEBUG Processing 604/1000 atomic regions from SNP 180984 to 181584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,268 DEBUG Processing 528/633 atomic regions from SNP 158118 to 158718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,304 DEBUG Processing 174/221 atomic regions from SNP 52114 to 52715 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:21,388 DEBUG Processing 565/1109 atomic regions from SNP 169374 to 169974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,410 DEBUG Processing 722/834 atomic regions from SNP 216327 to 216927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,418 DEBUG Processing 708/858 atomic regions from SNP 212171 to 212771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,467 DEBUG Processing 605/1000 atomic regions from SNP 181284 to 181884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,486 DEBUG Processing 529/633 atomic regions from SNP 158418 to 159018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,515 DEBUG Processing 175/221 atomic regions from SNP 52415 to 53016 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:21,638 DEBUG Processing 723/834 atomic regions from SNP 216627 to 217227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,638 DEBUG Processing 566/1109 atomic regions from SNP 169674 to 170274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,641 DEBUG Processing 709/858 atomic regions from SNP 212471 to 213071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,717 DEBUG Processing 606/1000 atomic regions from SNP 181584 to 182184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,720 DEBUG Processing 530/633 atomic regions from SNP 158718 to 159318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,731 DEBUG Processing 176/221 atomic regions from SNP 52716 to 53317 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:21,868 DEBUG Processing 724/834 atomic regions from SNP 216927 to 217527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,868 DEBUG Processing 710/858 atomic regions from SNP 212771 to 213371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,891 DEBUG Processing 567/1109 atomic regions from SNP 169974 to 170574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,950 DEBUG Processing 531/633 atomic regions from SNP 159018 to 159618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,951 DEBUG Processing 177/221 atomic regions from SNP 53017 to 53618 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:21,967 DEBUG Processing 607/1000 atomic regions from SNP 181884 to 182484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,087 DEBUG Processing 711/858 atomic regions from SNP 213071 to 213671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,097 DEBUG Processing 725/834 atomic regions from SNP 217227 to 217827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,150 DEBUG Processing 568/1109 atomic regions from SNP 170274 to 170874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,170 DEBUG Processing 178/221 atomic regions from SNP 53318 to 53919 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:22,180 DEBUG Processing 532/633 atomic regions from SNP 159318 to 159918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,215 DEBUG Processing 608/1000 atomic regions from SNP 182184 to 182784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,309 DEBUG Processing 712/858 atomic regions from SNP 213371 to 213971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,329 DEBUG Processing 726/834 atomic regions from SNP 217527 to 218127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,392 DEBUG Processing 179/221 atomic regions from SNP 53619 to 54220 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:22,411 DEBUG Processing 569/1109 atomic regions from SNP 170574 to 171174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,424 DEBUG Processing 533/633 atomic regions from SNP 159618 to 160218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,466 DEBUG Processing 609/1000 atomic regions from SNP 182484 to 183084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,526 DEBUG Processing 713/858 atomic regions from SNP 213671 to 214271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,556 DEBUG Processing 727/834 atomic regions from SNP 217827 to 218427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,612 DEBUG Processing 180/221 atomic regions from SNP 53920 to 54521 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:22,648 DEBUG Processing 534/633 atomic regions from SNP 159918 to 160518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,675 DEBUG Processing 570/1109 atomic regions from SNP 170874 to 171474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,714 DEBUG Processing 610/1000 atomic regions from SNP 182784 to 183384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,742 DEBUG Processing 714/858 atomic regions from SNP 213971 to 214571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,784 DEBUG Processing 728/834 atomic regions from SNP 218127 to 218727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,833 DEBUG Processing 181/221 atomic regions from SNP 54221 to 54822 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:22,896 DEBUG Processing 535/633 atomic regions from SNP 160218 to 160818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,938 DEBUG Processing 571/1109 atomic regions from SNP 171174 to 171774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,959 DEBUG Processing 715/858 atomic regions from SNP 214271 to 214871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,961 DEBUG Processing 611/1000 atomic regions from SNP 183084 to 183684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,023 DEBUG Processing 729/834 atomic regions from SNP 218427 to 219027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,051 DEBUG Processing 182/221 atomic regions from SNP 54522 to 55123 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:23,130 DEBUG Processing 536/633 atomic regions from SNP 160518 to 161118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,185 DEBUG Processing 716/858 atomic regions from SNP 214571 to 215171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,198 DEBUG Processing 572/1109 atomic regions from SNP 171474 to 172074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,209 DEBUG Processing 612/1000 atomic regions from SNP 183384 to 183984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,270 DEBUG Processing 183/221 atomic regions from SNP 54823 to 55424 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:23,279 DEBUG Processing 730/834 atomic regions from SNP 218727 to 219327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,346 DEBUG Processing 537/633 atomic regions from SNP 160818 to 161418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,408 DEBUG Processing 717/858 atomic regions from SNP 214871 to 215471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,455 DEBUG Processing 573/1109 atomic regions from SNP 171774 to 172374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,456 DEBUG Processing 613/1000 atomic regions from SNP 183684 to 184284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,494 DEBUG Processing 184/221 atomic regions from SNP 55124 to 55725 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:23,527 DEBUG Processing 731/834 atomic regions from SNP 219027 to 219627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,558 DEBUG Processing 538/633 atomic regions from SNP 161118 to 161718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,626 DEBUG Processing 718/858 atomic regions from SNP 215171 to 215771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,706 DEBUG Processing 614/1000 atomic regions from SNP 183984 to 184584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,711 DEBUG Processing 574/1109 atomic regions from SNP 172074 to 172674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,716 DEBUG Processing 185/221 atomic regions from SNP 55425 to 56026 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:23,765 DEBUG Processing 732/834 atomic regions from SNP 219327 to 219927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,777 DEBUG Processing 539/633 atomic regions from SNP 161418 to 162018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,846 DEBUG Processing 719/858 atomic regions from SNP 215471 to 216071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,937 DEBUG Processing 186/221 atomic regions from SNP 55726 to 56327 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:23,956 DEBUG Processing 615/1000 atomic regions from SNP 184284 to 184884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,967 DEBUG Processing 575/1109 atomic regions from SNP 172374 to 172974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,001 DEBUG Processing 733/834 atomic regions from SNP 219627 to 220227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,006 DEBUG Processing 540/633 atomic regions from SNP 161718 to 162318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,073 DEBUG Processing 720/858 atomic regions from SNP 215771 to 216371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,150 DEBUG Processing 187/221 atomic regions from SNP 56027 to 56628 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:24,206 DEBUG Processing 616/1000 atomic regions from SNP 184584 to 185184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,221 DEBUG Processing 576/1109 atomic regions from SNP 172674 to 173274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,238 DEBUG Processing 734/834 atomic regions from SNP 219927 to 220527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,244 DEBUG Processing 541/633 atomic regions from SNP 162018 to 162618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,307 DEBUG Processing 721/858 atomic regions from SNP 216071 to 216671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,361 DEBUG Processing 188/221 atomic regions from SNP 56328 to 56929 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:24,455 DEBUG Processing 617/1000 atomic regions from SNP 184884 to 185484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,466 DEBUG Processing 542/633 atomic regions from SNP 162318 to 162918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,477 DEBUG Processing 577/1109 atomic regions from SNP 172974 to 173574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,496 DEBUG Processing 735/834 atomic regions from SNP 220227 to 220827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,539 DEBUG Processing 722/858 atomic regions from SNP 216371 to 216971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,576 DEBUG Processing 189/221 atomic regions from SNP 56629 to 57230 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:24,692 DEBUG Processing 543/633 atomic regions from SNP 162618 to 163218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,707 DEBUG Processing 618/1000 atomic regions from SNP 185184 to 185784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,742 DEBUG Processing 578/1109 atomic regions from SNP 173274 to 173874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,759 DEBUG Processing 736/834 atomic regions from SNP 220527 to 221127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,767 DEBUG Processing 723/858 atomic regions from SNP 216671 to 217271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,800 DEBUG Processing 190/221 atomic regions from SNP 56930 to 57531 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:24,914 DEBUG Processing 544/633 atomic regions from SNP 162918 to 163518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,957 DEBUG Processing 619/1000 atomic regions from SNP 185484 to 186084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,989 DEBUG Processing 724/858 atomic regions from SNP 216971 to 217571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,996 DEBUG Processing 737/834 atomic regions from SNP 220827 to 221427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,002 DEBUG Processing 579/1109 atomic regions from SNP 173574 to 174174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,025 DEBUG Processing 191/221 atomic regions from SNP 57231 to 57832 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,135 DEBUG Processing 545/633 atomic regions from SNP 163218 to 163818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,210 DEBUG Processing 620/1000 atomic regions from SNP 185784 to 186384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,217 DEBUG Processing 725/858 atomic regions from SNP 217271 to 217871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,232 DEBUG Processing 738/834 atomic regions from SNP 221127 to 221727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,253 DEBUG Processing 192/221 atomic regions from SNP 57532 to 58133 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,262 DEBUG Processing 580/1109 atomic regions from SNP 173874 to 174474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,354 DEBUG Processing 546/633 atomic regions from SNP 163518 to 164118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,449 DEBUG Processing 726/858 atomic regions from SNP 217571 to 218171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,467 DEBUG Processing 621/1000 atomic regions from SNP 186084 to 186684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,470 DEBUG Processing 739/834 atomic regions from SNP 221427 to 222027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,482 DEBUG Processing 193/221 atomic regions from SNP 57833 to 58434 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,519 DEBUG Processing 581/1109 atomic regions from SNP 174174 to 174774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,565 DEBUG Processing 547/633 atomic regions from SNP 163818 to 164418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,677 DEBUG Processing 727/858 atomic regions from SNP 217871 to 218471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,711 DEBUG Processing 194/221 atomic regions from SNP 58134 to 58735 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,718 DEBUG Processing 740/834 atomic regions from SNP 221727 to 222327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,728 DEBUG Processing 622/1000 atomic regions from SNP 186384 to 186984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,781 DEBUG Processing 548/633 atomic regions from SNP 164118 to 164718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,782 DEBUG Processing 582/1109 atomic regions from SNP 174474 to 175074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,900 DEBUG Processing 728/858 atomic regions from SNP 218171 to 218771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,939 DEBUG Processing 195/221 atomic regions from SNP 58435 to 59036 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:25,977 DEBUG Processing 741/834 atomic regions from SNP 222027 to 222627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,987 DEBUG Processing 623/1000 atomic regions from SNP 186684 to 187284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,002 DEBUG Processing 549/633 atomic regions from SNP 164418 to 165018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,042 DEBUG Processing 583/1109 atomic regions from SNP 174774 to 175374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,117 DEBUG Processing 729/858 atomic regions from SNP 218471 to 219071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,163 DEBUG Processing 196/221 atomic regions from SNP 58736 to 59337 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:26,233 DEBUG Processing 742/834 atomic regions from SNP 222327 to 222927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,246 DEBUG Processing 550/633 atomic regions from SNP 164718 to 165318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,248 DEBUG Processing 624/1000 atomic regions from SNP 186984 to 187584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,302 DEBUG Processing 584/1109 atomic regions from SNP 175074 to 175674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,339 DEBUG Processing 730/858 atomic regions from SNP 218771 to 219371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,384 DEBUG Processing 197/221 atomic regions from SNP 59037 to 59638 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:26,468 DEBUG Processing 743/834 atomic regions from SNP 222627 to 223227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,487 DEBUG Processing 551/633 atomic regions from SNP 165018 to 165618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,519 DEBUG Processing 625/1000 atomic regions from SNP 187284 to 187884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,563 DEBUG Processing 585/1109 atomic regions from SNP 175374 to 175974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,568 DEBUG Processing 731/858 atomic regions from SNP 219071 to 219671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,602 DEBUG Processing 198/221 atomic regions from SNP 59338 to 59939 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:26,701 DEBUG Processing 744/834 atomic regions from SNP 222927 to 223527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,727 DEBUG Processing 552/633 atomic regions from SNP 165318 to 165918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,771 DEBUG Processing 626/1000 atomic regions from SNP 187584 to 188184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,819 DEBUG Processing 199/221 atomic regions from SNP 59639 to 60240 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:26,822 DEBUG Processing 732/858 atomic regions from SNP 219371 to 219971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,822 DEBUG Processing 586/1109 atomic regions from SNP 175674 to 176274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,935 DEBUG Processing 745/834 atomic regions from SNP 223227 to 223827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,974 DEBUG Processing 553/633 atomic regions from SNP 165618 to 166218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,020 DEBUG Processing 627/1000 atomic regions from SNP 187884 to 188484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,034 DEBUG Processing 200/221 atomic regions from SNP 59940 to 60541 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:27,049 DEBUG Processing 733/858 atomic regions from SNP 219671 to 220271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,079 DEBUG Processing 587/1109 atomic regions from SNP 175974 to 176574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,169 DEBUG Processing 746/834 atomic regions from SNP 223527 to 224127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,204 DEBUG Processing 554/633 atomic regions from SNP 165918 to 166518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,249 DEBUG Processing 201/221 atomic regions from SNP 60241 to 60842 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:27,270 DEBUG Processing 628/1000 atomic regions from SNP 188184 to 188784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,291 DEBUG Processing 734/858 atomic regions from SNP 219971 to 220571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,358 DEBUG Processing 588/1109 atomic regions from SNP 176274 to 176874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,414 DEBUG Processing 747/834 atomic regions from SNP 223827 to 224427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,436 DEBUG Processing 555/633 atomic regions from SNP 166218 to 166818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,473 DEBUG Processing 202/221 atomic regions from SNP 60542 to 61143 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:27,520 DEBUG Processing 629/1000 atomic regions from SNP 188484 to 189084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,533 DEBUG Processing 735/858 atomic regions from SNP 220271 to 220871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,613 DEBUG Processing 589/1109 atomic regions from SNP 176574 to 177174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,658 DEBUG Processing 748/834 atomic regions from SNP 224127 to 224727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,682 DEBUG Processing 556/633 atomic regions from SNP 166518 to 167118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,698 DEBUG Processing 203/221 atomic regions from SNP 60843 to 61444 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:27,758 DEBUG Processing 736/858 atomic regions from SNP 220571 to 221171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,771 DEBUG Processing 630/1000 atomic regions from SNP 188784 to 189384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,875 DEBUG Processing 590/1109 atomic regions from SNP 176874 to 177474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,920 DEBUG Processing 749/834 atomic regions from SNP 224427 to 225027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,922 DEBUG Processing 204/221 atomic regions from SNP 61144 to 61745 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:27,928 DEBUG Processing 557/633 atomic regions from SNP 166818 to 167418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,981 DEBUG Processing 737/858 atomic regions from SNP 220871 to 221471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,025 DEBUG Processing 631/1000 atomic regions from SNP 189084 to 189684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,135 DEBUG Processing 591/1109 atomic regions from SNP 177174 to 177774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,144 DEBUG Processing 205/221 atomic regions from SNP 61445 to 62046 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:28,167 DEBUG Processing 558/633 atomic regions from SNP 167118 to 167718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,173 DEBUG Processing 750/834 atomic regions from SNP 224727 to 225327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,208 DEBUG Processing 738/858 atomic regions from SNP 221171 to 221771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,284 DEBUG Processing 632/1000 atomic regions from SNP 189384 to 189984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,366 DEBUG Processing 206/221 atomic regions from SNP 61746 to 62347 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:28,397 DEBUG Processing 559/633 atomic regions from SNP 167418 to 168018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,409 DEBUG Processing 592/1109 atomic regions from SNP 177474 to 178074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,436 DEBUG Processing 751/834 atomic regions from SNP 225027 to 225627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,443 DEBUG Processing 739/858 atomic regions from SNP 221471 to 222071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,540 DEBUG Processing 633/1000 atomic regions from SNP 189684 to 190284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,589 DEBUG Processing 207/221 atomic regions from SNP 62047 to 62648 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:28,625 DEBUG Processing 560/633 atomic regions from SNP 167718 to 168318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,674 DEBUG Processing 740/858 atomic regions from SNP 221771 to 222371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,681 DEBUG Processing 593/1109 atomic regions from SNP 177774 to 178374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,693 DEBUG Processing 752/834 atomic regions from SNP 225327 to 225927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,795 DEBUG Processing 634/1000 atomic regions from SNP 189984 to 190584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,811 DEBUG Processing 208/221 atomic regions from SNP 62348 to 62949 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:28,852 DEBUG Processing 561/633 atomic regions from SNP 168018 to 168618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,907 DEBUG Processing 741/858 atomic regions from SNP 222071 to 222671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,926 DEBUG Processing 753/834 atomic regions from SNP 225627 to 226227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,949 DEBUG Processing 594/1109 atomic regions from SNP 178074 to 178674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,034 DEBUG Processing 209/221 atomic regions from SNP 62649 to 63250 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:29,049 DEBUG Processing 635/1000 atomic regions from SNP 190284 to 190884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,075 DEBUG Processing 562/633 atomic regions from SNP 168318 to 168918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,138 DEBUG Processing 742/858 atomic regions from SNP 222371 to 222971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,192 DEBUG Processing 754/834 atomic regions from SNP 225927 to 226527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,220 DEBUG Processing 595/1109 atomic regions from SNP 178374 to 178974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,259 DEBUG Processing 210/221 atomic regions from SNP 62950 to 63551 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:29,295 DEBUG Processing 563/633 atomic regions from SNP 168618 to 169218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,303 DEBUG Processing 636/1000 atomic regions from SNP 190584 to 191184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,365 DEBUG Processing 743/858 atomic regions from SNP 222671 to 223271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,433 DEBUG Processing 755/834 atomic regions from SNP 226227 to 226827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,490 DEBUG Processing 211/221 atomic regions from SNP 63251 to 63852 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:29,496 DEBUG Processing 596/1109 atomic regions from SNP 178674 to 179274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,522 DEBUG Processing 564/633 atomic regions from SNP 168918 to 169518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,562 DEBUG Processing 637/1000 atomic regions from SNP 190884 to 191484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,590 DEBUG Processing 744/858 atomic regions from SNP 222971 to 223571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,661 DEBUG Processing 756/834 atomic regions from SNP 226527 to 227127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,720 DEBUG Processing 212/221 atomic regions from SNP 63552 to 64153 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:29,754 DEBUG Processing 565/633 atomic regions from SNP 169218 to 169818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,774 DEBUG Processing 597/1109 atomic regions from SNP 178974 to 179574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,816 DEBUG Processing 638/1000 atomic regions from SNP 191184 to 191784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,822 DEBUG Processing 745/858 atomic regions from SNP 223271 to 223871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,888 DEBUG Processing 757/834 atomic regions from SNP 226827 to 227427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,946 DEBUG Processing 213/221 atomic regions from SNP 63853 to 64454 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:29,981 DEBUG Processing 566/633 atomic regions from SNP 169518 to 170118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,047 DEBUG Processing 598/1109 atomic regions from SNP 179274 to 179874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,062 DEBUG Processing 746/858 atomic regions from SNP 223571 to 224171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,073 DEBUG Processing 639/1000 atomic regions from SNP 191484 to 192084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,119 DEBUG Processing 758/834 atomic regions from SNP 227127 to 227727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,167 DEBUG Processing 214/221 atomic regions from SNP 64154 to 64755 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:30,201 DEBUG Processing 567/633 atomic regions from SNP 169818 to 170418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,306 DEBUG Processing 747/858 atomic regions from SNP 223871 to 224471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,323 DEBUG Processing 599/1109 atomic regions from SNP 179574 to 180174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,332 DEBUG Processing 640/1000 atomic regions from SNP 191784 to 192384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,354 DEBUG Processing 759/834 atomic regions from SNP 227427 to 228027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,396 DEBUG Processing 215/221 atomic regions from SNP 64455 to 65056 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:30,418 DEBUG Processing 568/633 atomic regions from SNP 170118 to 170718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,544 DEBUG Processing 748/858 atomic regions from SNP 224171 to 224771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,590 DEBUG Processing 641/1000 atomic regions from SNP 192084 to 192684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,597 DEBUG Processing 600/1109 atomic regions from SNP 179874 to 180474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,605 DEBUG Processing 760/834 atomic regions from SNP 227727 to 228327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,620 DEBUG Processing 216/221 atomic regions from SNP 64756 to 65357 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:30,640 DEBUG Processing 569/633 atomic regions from SNP 170418 to 171018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,773 DEBUG Processing 749/858 atomic regions from SNP 224471 to 225071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,847 DEBUG Processing 642/1000 atomic regions from SNP 192384 to 192984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,847 DEBUG Processing 217/221 atomic regions from SNP 65057 to 65658 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:30,864 DEBUG Processing 761/834 atomic regions from SNP 228027 to 228627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,870 DEBUG Processing 570/633 atomic regions from SNP 170718 to 171318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,872 DEBUG Processing 601/1109 atomic regions from SNP 180174 to 180774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,997 DEBUG Processing 750/858 atomic regions from SNP 224771 to 225371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,070 DEBUG Processing 218/221 atomic regions from SNP 65358 to 65959 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:31,097 DEBUG Processing 571/633 atomic regions from SNP 171018 to 171618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,100 DEBUG Processing 643/1000 atomic regions from SNP 192684 to 193284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,105 DEBUG Processing 762/834 atomic regions from SNP 228327 to 228927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,142 DEBUG Processing 602/1109 atomic regions from SNP 180474 to 181074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,228 DEBUG Processing 751/858 atomic regions from SNP 225071 to 225671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,294 DEBUG Processing 219/221 atomic regions from SNP 65659 to 66260 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:31,321 DEBUG Processing 572/633 atomic regions from SNP 171318 to 171918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,355 DEBUG Processing 644/1000 atomic regions from SNP 192984 to 193584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,356 DEBUG Processing 763/834 atomic regions from SNP 228627 to 229227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,411 DEBUG Processing 603/1109 atomic regions from SNP 180774 to 181374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,462 DEBUG Processing 752/858 atomic regions from SNP 225371 to 225971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,514 DEBUG Processing 220/221 atomic regions from SNP 65960 to 66561 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:31,540 DEBUG Processing 573/633 atomic regions from SNP 171618 to 172218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,603 DEBUG Processing 645/1000 atomic regions from SNP 193284 to 193884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,609 DEBUG Processing 764/834 atomic regions from SNP 228927 to 229527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,673 DEBUG Processing 604/1109 atomic regions from SNP 181074 to 181674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,702 DEBUG Processing 753/858 atomic regions from SNP 225671 to 226271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,738 DEBUG Processing 221/221 atomic regions from SNP 66261 to 66862 for chrX (subchromosome 5 of 5). 2025-01-31 09:43:31,762 DEBUG Processing 574/633 atomic regions from SNP 171918 to 172518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,839 DEBUG Processing 765/834 atomic regions from SNP 229227 to 229827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,854 DEBUG Processing 646/1000 atomic regions from SNP 193584 to 194184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,863 DEBUG Unique SNPs positions in subchromosome 5: 66863 2025-01-31 09:43:31,940 DEBUG Processing 754/858 atomic regions from SNP 225971 to 226571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,942 DEBUG Processing 605/1109 atomic regions from SNP 181374 to 181974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,956 DEBUG Subchromosome time: 56.81406840996351, subchromosome SNPs: 66863 2025-01-31 09:43:31,957 DEBUG Estimated BADs: [0.67, 4.71, 1.35, 0.67, 0.00, 0.00, 1.35, 0.67, 2.02, 0.67, 0.34, 1.35, 0.67, 1.35, 0.67, 0.34, 0.13, 0.22, 0.67, 6.73] SNP counts: [3823, 803, 11471, 16217, 2, 44, 6094, 52531, 4159, 2708, 22004, 6925, 9061, 7939, 7896, 8261, 9540, 11694, 55133, 36] SNP IDs counts: [3823, 803, 11471, 16217, 2, 44, 6094, 52531, 4159, 2708, 22004, 6925, 9061, 7939, 7896, 8261, 9540, 11694, 55133, 36] Critical gap: 764987bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 7.98Mbp, 14.78Mbp, 26.92Mbp[1.11Mbp], 28.03Mbp[1.54Mbp], 29.68Mbp[1.45Mbp], 39.34Mbp, 72.91Mbp, 75.67Mbp, 77.42Mbp, 91.31Mbp, 95.93Mbp, 101.25Mbp, 105.92Mbp, 110.81Mbp, 116.54Mbp, 124.25Mbp[1.80Mbp], 134.04Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:43:31,957 DEBUG chrX time: 56.81471787102055 s 2025-01-31 09:43:31,992 DEBUG Processing 575/633 atomic regions from SNP 172218 to 172818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,074 DEBUG Processing 766/834 atomic regions from SNP 229527 to 230127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,110 DEBUG Processing 647/1000 atomic regions from SNP 193884 to 194484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,120 DEBUG chrX: Fitting background model for 18 segments 2025-01-31 09:43:32,181 DEBUG Processing 755/858 atomic regions from SNP 226271 to 226871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,218 DEBUG Processing 606/1109 atomic regions from SNP 181674 to 182274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,220 DEBUG Processing 576/633 atomic regions from SNP 172518 to 173118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,328 DEBUG Processing 767/834 atomic regions from SNP 229827 to 230427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,376 DEBUG Processing 648/1000 atomic regions from SNP 194184 to 194784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,421 DEBUG Processing 756/858 atomic regions from SNP 226571 to 227171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,448 DEBUG Processing 577/633 atomic regions from SNP 172818 to 173418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,488 DEBUG Processing 607/1109 atomic regions from SNP 181974 to 182574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,586 DEBUG Processing 768/834 atomic regions from SNP 230127 to 230727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,636 DEBUG Processing 649/1000 atomic regions from SNP 194484 to 195084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,652 DEBUG Processing 757/858 atomic regions from SNP 226871 to 227471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,671 DEBUG Processing 578/633 atomic regions from SNP 173118 to 173718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,751 DEBUG Processing 608/1109 atomic regions from SNP 182274 to 182874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,853 DEBUG Processing 769/834 atomic regions from SNP 230427 to 231027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,891 DEBUG Processing 758/858 atomic regions from SNP 227171 to 227771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,899 DEBUG Processing 650/1000 atomic regions from SNP 194784 to 195384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,900 DEBUG Processing 579/633 atomic regions from SNP 173418 to 174018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,017 DEBUG Processing 609/1109 atomic regions from SNP 182574 to 183174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,107 DEBUG Processing 770/834 atomic regions from SNP 230727 to 231327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,118 DEBUG Processing 759/858 atomic regions from SNP 227471 to 228071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,121 DEBUG Processing 580/633 atomic regions from SNP 173718 to 174318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,157 DEBUG Processing 651/1000 atomic regions from SNP 195084 to 195684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,288 DEBUG Processing 610/1109 atomic regions from SNP 182874 to 183474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,335 DEBUG Processing 771/834 atomic regions from SNP 231027 to 231627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,340 DEBUG Processing 581/633 atomic regions from SNP 174018 to 174618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,343 DEBUG Processing 760/858 atomic regions from SNP 227771 to 228371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,412 DEBUG Processing 652/1000 atomic regions from SNP 195384 to 195984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,559 DEBUG Processing 611/1109 atomic regions from SNP 183174 to 183774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,573 DEBUG Processing 582/633 atomic regions from SNP 174318 to 174918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,573 DEBUG Processing 772/834 atomic regions from SNP 231327 to 231927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,575 DEBUG Processing 761/858 atomic regions from SNP 228071 to 228671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,672 DEBUG Processing 653/1000 atomic regions from SNP 195684 to 196284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,815 DEBUG Processing 762/858 atomic regions from SNP 228371 to 228971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,828 DEBUG Processing 773/834 atomic regions from SNP 231627 to 232227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,829 DEBUG Processing 583/633 atomic regions from SNP 174618 to 175218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,832 DEBUG Processing 612/1109 atomic regions from SNP 183474 to 184074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,945 DEBUG Processing 654/1000 atomic regions from SNP 195984 to 196584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,067 DEBUG Processing 763/858 atomic regions from SNP 228671 to 229271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,079 DEBUG Processing 774/834 atomic regions from SNP 231927 to 232527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,091 DEBUG Processing 584/633 atomic regions from SNP 174918 to 175518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,121 DEBUG Processing 613/1109 atomic regions from SNP 183774 to 184374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,223 DEBUG Processing 655/1000 atomic regions from SNP 196284 to 196884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,322 DEBUG Processing 764/858 atomic regions from SNP 228971 to 229571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,332 DEBUG Processing 775/834 atomic regions from SNP 232227 to 232827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,337 DEBUG Processing 585/633 atomic regions from SNP 175218 to 175818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,411 DEBUG Processing 614/1109 atomic regions from SNP 184074 to 184674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,505 DEBUG Processing 656/1000 atomic regions from SNP 196584 to 197184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,578 DEBUG Processing 765/858 atomic regions from SNP 229271 to 229871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,587 DEBUG Processing 776/834 atomic regions from SNP 232527 to 233127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,596 DEBUG Processing 586/633 atomic regions from SNP 175518 to 176118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,704 DEBUG Processing 615/1109 atomic regions from SNP 184374 to 184974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,795 DEBUG Processing 657/1000 atomic regions from SNP 196884 to 197484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,835 DEBUG Processing 766/858 atomic regions from SNP 229571 to 230171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,846 DEBUG Processing 777/834 atomic regions from SNP 232827 to 233427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,863 DEBUG Processing 587/633 atomic regions from SNP 175818 to 176418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,995 DEBUG Processing 616/1109 atomic regions from SNP 184674 to 185274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,123 DEBUG Processing 658/1000 atomic regions from SNP 197184 to 197784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,195 DEBUG Processing 767/858 atomic regions from SNP 229871 to 230471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,223 DEBUG Processing 778/834 atomic regions from SNP 233127 to 233727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,244 DEBUG Processing 588/633 atomic regions from SNP 176118 to 176718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,352 DEBUG Processing 617/1109 atomic regions from SNP 184974 to 185574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,392 DEBUG Processing 659/1000 atomic regions from SNP 197484 to 198084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,429 DEBUG Processing 768/858 atomic regions from SNP 230171 to 230771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,468 DEBUG Processing 779/834 atomic regions from SNP 233427 to 234027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,482 DEBUG Processing 589/633 atomic regions from SNP 176418 to 177018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,638 DEBUG Processing 618/1109 atomic regions from SNP 185274 to 185874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,659 DEBUG Processing 660/1000 atomic regions from SNP 197784 to 198384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,667 DEBUG Processing 769/858 atomic regions from SNP 230471 to 231071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,712 DEBUG Processing 590/633 atomic regions from SNP 176718 to 177318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,729 DEBUG Processing 780/834 atomic regions from SNP 233727 to 234327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,909 DEBUG Processing 770/858 atomic regions from SNP 230771 to 231371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,916 DEBUG Processing 619/1109 atomic regions from SNP 185574 to 186174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,926 DEBUG Processing 661/1000 atomic regions from SNP 198084 to 198684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,943 DEBUG Processing 591/633 atomic regions from SNP 177018 to 177618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,985 DEBUG Processing 781/834 atomic regions from SNP 234027 to 234627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,152 DEBUG Processing 771/858 atomic regions from SNP 231071 to 231671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,180 DEBUG Processing 592/633 atomic regions from SNP 177318 to 177918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,195 DEBUG Processing 620/1109 atomic regions from SNP 185874 to 186474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,197 DEBUG Processing 662/1000 atomic regions from SNP 198384 to 198984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,255 DEBUG Processing 782/834 atomic regions from SNP 234327 to 234927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,396 DEBUG Processing 772/858 atomic regions from SNP 231371 to 231971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,423 DEBUG Processing 593/633 atomic regions from SNP 177618 to 178218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,474 DEBUG Processing 621/1109 atomic regions from SNP 186174 to 186774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,483 DEBUG Processing 663/1000 atomic regions from SNP 198684 to 199284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,528 DEBUG Processing 783/834 atomic regions from SNP 234627 to 235227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,642 DEBUG Processing 773/858 atomic regions from SNP 231671 to 232271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,657 DEBUG Processing 594/633 atomic regions from SNP 177918 to 178518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,742 DEBUG Processing 622/1109 atomic regions from SNP 186474 to 187074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,761 DEBUG Processing 664/1000 atomic regions from SNP 198984 to 199584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,781 DEBUG Processing 784/834 atomic regions from SNP 234927 to 235527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,883 DEBUG Processing 774/858 atomic regions from SNP 231971 to 232571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,892 DEBUG Processing 595/633 atomic regions from SNP 178218 to 178818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,021 DEBUG Processing 623/1109 atomic regions from SNP 186774 to 187374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,036 DEBUG Processing 785/834 atomic regions from SNP 235227 to 235827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,048 DEBUG Processing 665/1000 atomic regions from SNP 199284 to 199884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,132 DEBUG Processing 775/858 atomic regions from SNP 232271 to 232871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,148 DEBUG Processing 596/633 atomic regions from SNP 178518 to 179118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,291 DEBUG Processing 624/1109 atomic regions from SNP 187074 to 187674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,300 DEBUG Processing 786/834 atomic regions from SNP 235527 to 236127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,332 DEBUG Processing 666/1000 atomic regions from SNP 199584 to 200184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,378 DEBUG Processing 776/858 atomic regions from SNP 232571 to 233171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,405 DEBUG Processing 597/633 atomic regions from SNP 178818 to 179418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,564 DEBUG Processing 625/1109 atomic regions from SNP 187374 to 187974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,573 DEBUG Processing 787/834 atomic regions from SNP 235827 to 236427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,629 DEBUG Processing 777/858 atomic regions from SNP 232871 to 233471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,630 DEBUG Processing 667/1000 atomic regions from SNP 199884 to 200484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,647 DEBUG Processing 598/633 atomic regions from SNP 179118 to 179718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,838 DEBUG Processing 626/1109 atomic regions from SNP 187674 to 188274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,843 DEBUG Processing 788/834 atomic regions from SNP 236127 to 236727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,880 DEBUG Processing 778/858 atomic regions from SNP 233171 to 233771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,897 DEBUG Processing 599/633 atomic regions from SNP 179418 to 180018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,907 DEBUG Processing 668/1000 atomic regions from SNP 200184 to 200784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,108 DEBUG Processing 789/834 atomic regions from SNP 236427 to 237027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,120 DEBUG Processing 627/1109 atomic regions from SNP 187974 to 188574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,134 DEBUG Processing 779/858 atomic regions from SNP 233471 to 234071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,142 DEBUG Processing 600/633 atomic regions from SNP 179718 to 180318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,191 DEBUG Processing 669/1000 atomic regions from SNP 200484 to 201084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,363 DEBUG Processing 790/834 atomic regions from SNP 236727 to 237327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,389 DEBUG Processing 780/858 atomic regions from SNP 233771 to 234371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,392 DEBUG Processing 601/633 atomic regions from SNP 180018 to 180618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,408 DEBUG Processing 628/1109 atomic regions from SNP 188274 to 188874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,471 DEBUG Processing 670/1000 atomic regions from SNP 200784 to 201384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,629 DEBUG Processing 791/834 atomic regions from SNP 237027 to 237627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,632 DEBUG Processing 602/633 atomic regions from SNP 180318 to 180918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,632 DEBUG Processing 781/858 atomic regions from SNP 234071 to 234671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,687 DEBUG Processing 629/1109 atomic regions from SNP 188574 to 189174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,750 DEBUG Processing 671/1000 atomic regions from SNP 201084 to 201684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,910 DEBUG Processing 603/633 atomic regions from SNP 180618 to 181218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,923 DEBUG Processing 782/858 atomic regions from SNP 234371 to 234971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,924 DEBUG Processing 792/834 atomic regions from SNP 237327 to 237927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,021 DEBUG Processing 630/1109 atomic regions from SNP 188874 to 189474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,139 DEBUG Processing 672/1000 atomic regions from SNP 201384 to 201984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,227 DEBUG Processing 604/633 atomic regions from SNP 180918 to 181518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,239 DEBUG Processing 783/858 atomic regions from SNP 234671 to 235271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,246 DEBUG Processing 793/834 atomic regions from SNP 237627 to 238227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,330 DEBUG Processing 631/1109 atomic regions from SNP 189174 to 189774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,462 DEBUG Processing 673/1000 atomic regions from SNP 201684 to 202284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,572 DEBUG Processing 605/633 atomic regions from SNP 181218 to 181818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,613 DEBUG Processing 794/834 atomic regions from SNP 237927 to 238527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,616 DEBUG Processing 784/858 atomic regions from SNP 234971 to 235571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,729 DEBUG Processing 632/1109 atomic regions from SNP 189474 to 190074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,831 DEBUG Processing 674/1000 atomic regions from SNP 201984 to 202584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,845 DEBUG Processing 606/633 atomic regions from SNP 181518 to 182118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,883 DEBUG Processing 785/858 atomic regions from SNP 235271 to 235871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,890 DEBUG Processing 795/834 atomic regions from SNP 238227 to 238827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,005 DEBUG Processing 633/1109 atomic regions from SNP 189774 to 190374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,094 DEBUG Processing 607/633 atomic regions from SNP 181818 to 182418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,110 DEBUG Processing 675/1000 atomic regions from SNP 202284 to 202884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,129 DEBUG Processing 786/858 atomic regions from SNP 235571 to 236171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,163 DEBUG Processing 796/834 atomic regions from SNP 238527 to 239127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,319 DEBUG Processing 634/1109 atomic regions from SNP 190074 to 190674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,366 DEBUG Processing 608/633 atomic regions from SNP 182118 to 182718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,381 DEBUG Processing 787/858 atomic regions from SNP 235871 to 236471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,395 DEBUG Processing 676/1000 atomic regions from SNP 202584 to 203184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,443 DEBUG Processing 797/834 atomic regions from SNP 238827 to 239427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,634 DEBUG Processing 635/1109 atomic regions from SNP 190374 to 190974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,696 DEBUG Processing 609/633 atomic regions from SNP 182418 to 183018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,721 DEBUG Processing 788/858 atomic regions from SNP 236171 to 236771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,779 DEBUG Processing 677/1000 atomic regions from SNP 202884 to 203484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,782 DEBUG Processing 798/834 atomic regions from SNP 239127 to 239727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,022 DEBUG Processing 636/1109 atomic regions from SNP 190674 to 191274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,042 DEBUG Processing 610/633 atomic regions from SNP 182718 to 183318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,047 DEBUG Processing 789/858 atomic regions from SNP 236471 to 237071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,078 DEBUG Processing 799/834 atomic regions from SNP 239427 to 240027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,102 DEBUG Processing 678/1000 atomic regions from SNP 203184 to 203784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,392 DEBUG Processing 637/1109 atomic regions from SNP 190974 to 191574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,399 DEBUG Processing 611/633 atomic regions from SNP 183018 to 183618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,409 DEBUG Processing 790/858 atomic regions from SNP 236771 to 237371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,449 DEBUG Processing 800/834 atomic regions from SNP 239727 to 240327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,510 DEBUG Processing 679/1000 atomic regions from SNP 203484 to 204084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,644 DEBUG Processing 612/633 atomic regions from SNP 183318 to 183918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,663 DEBUG Processing 791/858 atomic regions from SNP 237071 to 237671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,682 DEBUG Processing 638/1109 atomic regions from SNP 191274 to 191874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,719 DEBUG Processing 801/834 atomic regions from SNP 240027 to 240627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,823 DEBUG Processing 680/1000 atomic regions from SNP 203784 to 204384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,881 DEBUG Processing 613/633 atomic regions from SNP 183618 to 184218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,910 DEBUG Processing 792/858 atomic regions from SNP 237371 to 237971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,973 DEBUG Processing 802/834 atomic regions from SNP 240327 to 240927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,975 DEBUG Processing 639/1109 atomic regions from SNP 191574 to 192174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,169 DEBUG Processing 681/1000 atomic regions from SNP 204084 to 204684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,182 DEBUG Processing 614/633 atomic regions from SNP 183918 to 184518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,221 DEBUG Processing 793/858 atomic regions from SNP 237671 to 238271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,286 DEBUG Processing 803/834 atomic regions from SNP 240627 to 241227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,304 DEBUG Processing 640/1109 atomic regions from SNP 191874 to 192474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,512 DEBUG Processing 615/633 atomic regions from SNP 184218 to 184818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,539 DEBUG Processing 682/1000 atomic regions from SNP 204384 to 204984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,590 DEBUG Processing 794/858 atomic regions from SNP 237971 to 238571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,695 DEBUG Processing 804/834 atomic regions from SNP 240927 to 241527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,726 DEBUG Processing 641/1109 atomic regions from SNP 192174 to 192774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,912 DEBUG Processing 616/633 atomic regions from SNP 184518 to 185118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,965 DEBUG Processing 683/1000 atomic regions from SNP 204684 to 205284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,967 DEBUG Processing 795/858 atomic regions from SNP 238271 to 238871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,152 DEBUG Processing 805/834 atomic regions from SNP 241227 to 241827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,193 DEBUG Processing 642/1109 atomic regions from SNP 192474 to 193074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,374 DEBUG Processing 617/633 atomic regions from SNP 184818 to 185418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,409 DEBUG Processing 684/1000 atomic regions from SNP 204984 to 205584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,420 DEBUG Processing 796/858 atomic regions from SNP 238571 to 239171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,570 DEBUG Processing 806/834 atomic regions from SNP 241527 to 242127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,600 DEBUG Processing 643/1109 atomic regions from SNP 192774 to 193374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,698 DEBUG Processing 618/633 atomic regions from SNP 185118 to 185718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,804 DEBUG Processing 797/858 atomic regions from SNP 238871 to 239471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,817 DEBUG Processing 685/1000 atomic regions from SNP 205284 to 205884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,997 DEBUG Processing 807/834 atomic regions from SNP 241827 to 242427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,041 DEBUG Processing 644/1109 atomic regions from SNP 193074 to 193674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,050 DEBUG Processing 619/633 atomic regions from SNP 185418 to 186018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,161 DEBUG Processing 798/858 atomic regions from SNP 239171 to 239771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,245 DEBUG Processing 686/1000 atomic regions from SNP 205584 to 206184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,457 DEBUG Processing 808/834 atomic regions from SNP 242127 to 242727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,514 DEBUG Processing 620/633 atomic regions from SNP 185718 to 186318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,528 DEBUG Processing 645/1109 atomic regions from SNP 193374 to 193974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,582 DEBUG Processing 799/858 atomic regions from SNP 239471 to 240071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,708 DEBUG Processing 687/1000 atomic regions from SNP 205884 to 206484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,947 DEBUG Processing 809/834 atomic regions from SNP 242427 to 243027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,048 DEBUG Processing 621/633 atomic regions from SNP 186018 to 186618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,072 DEBUG Processing 800/858 atomic regions from SNP 239771 to 240371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,087 DEBUG Processing 646/1109 atomic regions from SNP 193674 to 194274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,194 DEBUG Processing 688/1000 atomic regions from SNP 206184 to 206784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,412 DEBUG Processing 810/834 atomic regions from SNP 242727 to 243327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,579 DEBUG Processing 801/858 atomic regions from SNP 240071 to 240671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,579 DEBUG Processing 622/633 atomic regions from SNP 186318 to 186918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,611 DEBUG Processing 647/1109 atomic regions from SNP 193974 to 194574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,688 DEBUG Processing 689/1000 atomic regions from SNP 206484 to 207084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,903 DEBUG Processing 811/834 atomic regions from SNP 243027 to 243627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,043 DEBUG Processing 623/633 atomic regions from SNP 186618 to 187218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,056 DEBUG Processing 802/858 atomic regions from SNP 240371 to 240971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,164 DEBUG Processing 648/1109 atomic regions from SNP 194274 to 194874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,201 DEBUG Processing 690/1000 atomic regions from SNP 206784 to 207384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,390 DEBUG Processing 812/834 atomic regions from SNP 243327 to 243927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,499 DEBUG Processing 624/633 atomic regions from SNP 186918 to 187518 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,503 DEBUG Processing 803/858 atomic regions from SNP 240671 to 241271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,671 DEBUG Processing 649/1109 atomic regions from SNP 194574 to 195174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,697 DEBUG Processing 691/1000 atomic regions from SNP 207084 to 207684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,797 DEBUG Processing 813/834 atomic regions from SNP 243627 to 244227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,981 DEBUG Processing 804/858 atomic regions from SNP 240971 to 241571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,982 DEBUG Processing 625/633 atomic regions from SNP 187218 to 187818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,143 DEBUG Processing 814/834 atomic regions from SNP 243927 to 244527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,149 DEBUG Processing 692/1000 atomic regions from SNP 207384 to 207984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,162 DEBUG Processing 650/1109 atomic regions from SNP 194874 to 195474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,367 DEBUG Processing 805/858 atomic regions from SNP 241271 to 241871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,408 DEBUG Processing 626/633 atomic regions from SNP 187518 to 188118 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,600 DEBUG Processing 815/834 atomic regions from SNP 244227 to 244827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,620 DEBUG Processing 693/1000 atomic regions from SNP 207684 to 208284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,666 DEBUG Processing 651/1109 atomic regions from SNP 195174 to 195774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,707 DEBUG Processing 806/858 atomic regions from SNP 241571 to 242171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,808 DEBUG Processing 627/633 atomic regions from SNP 187818 to 188418 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,093 DEBUG Processing 816/834 atomic regions from SNP 244527 to 245127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,134 DEBUG Processing 694/1000 atomic regions from SNP 207984 to 208584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,188 DEBUG Processing 652/1109 atomic regions from SNP 195474 to 196074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,190 DEBUG Processing 807/858 atomic regions from SNP 241871 to 242471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,225 DEBUG Processing 628/633 atomic regions from SNP 188118 to 188718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,468 DEBUG Processing 817/834 atomic regions from SNP 244827 to 245427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,572 DEBUG Processing 695/1000 atomic regions from SNP 208284 to 208884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,627 DEBUG Processing 808/858 atomic regions from SNP 242171 to 242771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,656 DEBUG Processing 629/633 atomic regions from SNP 188418 to 189018 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,699 DEBUG Processing 653/1109 atomic regions from SNP 195774 to 196374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,794 DEBUG Processing 818/834 atomic regions from SNP 245127 to 245727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,976 DEBUG Processing 696/1000 atomic regions from SNP 208584 to 209184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,042 DEBUG Processing 809/858 atomic regions from SNP 242471 to 243071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,101 DEBUG Processing 630/633 atomic regions from SNP 188718 to 189318 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,156 DEBUG Processing 819/834 atomic regions from SNP 245427 to 246027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,175 DEBUG Processing 654/1109 atomic regions from SNP 196074 to 196674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,255 DEBUG Processing 697/1000 atomic regions from SNP 208884 to 209484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,280 DEBUG Processing 810/858 atomic regions from SNP 242771 to 243371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,404 DEBUG Processing 631/633 atomic regions from SNP 189018 to 189618 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,569 DEBUG Processing 820/834 atomic regions from SNP 245727 to 246327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,577 DEBUG Processing 655/1109 atomic regions from SNP 196374 to 196974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,638 DEBUG Processing 811/858 atomic regions from SNP 243071 to 243671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,643 DEBUG Processing 698/1000 atomic regions from SNP 209184 to 209784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,714 DEBUG Processing 632/633 atomic regions from SNP 189318 to 189918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,054 DEBUG Processing 821/834 atomic regions from SNP 246027 to 246627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,085 DEBUG Processing 656/1109 atomic regions from SNP 196674 to 197274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,175 DEBUG Processing 812/858 atomic regions from SNP 243371 to 243971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,201 DEBUG Processing 699/1000 atomic regions from SNP 209484 to 210084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,234 DEBUG Processing 633/633 atomic regions from SNP 189618 to 190218 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,483 DEBUG Processing 822/834 atomic regions from SNP 246327 to 246927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,532 DEBUG Unique SNPs positions in subchromosome 2: 190219 2025-01-31 09:43:50,534 DEBUG Processing 657/1109 atomic regions from SNP 196974 to 197574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,562 DEBUG Processing 813/858 atomic regions from SNP 243671 to 244271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,654 DEBUG Processing 700/1000 atomic regions from SNP 209784 to 210384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,878 DEBUG Processing 823/834 atomic regions from SNP 246627 to 247227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,965 DEBUG Processing 658/1109 atomic regions from SNP 197274 to 197874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,004 DEBUG Processing 814/858 atomic regions from SNP 243971 to 244571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,107 DEBUG Processing 701/1000 atomic regions from SNP 210084 to 210684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,169 DEBUG Processing 824/834 atomic regions from SNP 246927 to 247527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,250 DEBUG Processing 659/1109 atomic regions from SNP 197574 to 198174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,263 DEBUG Processing 815/858 atomic regions from SNP 244271 to 244871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,470 DEBUG Processing 702/1000 atomic regions from SNP 210384 to 210984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,541 DEBUG Processing 825/834 atomic regions from SNP 247227 to 247827 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,657 DEBUG Processing 816/858 atomic regions from SNP 244571 to 245171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,661 DEBUG Processing 660/1109 atomic regions from SNP 197874 to 198474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,760 DEBUG Processing 703/1000 atomic regions from SNP 210684 to 211284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,812 DEBUG Processing 826/834 atomic regions from SNP 247527 to 248127 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,921 DEBUG Processing 817/858 atomic regions from SNP 244871 to 245471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,964 DEBUG Processing 661/1109 atomic regions from SNP 198174 to 198774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,032 DEBUG Processing 704/1000 atomic regions from SNP 210984 to 211584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,072 DEBUG Processing 827/834 atomic regions from SNP 247827 to 248427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,163 DEBUG Processing 818/858 atomic regions from SNP 245171 to 245771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,236 DEBUG Processing 662/1109 atomic regions from SNP 198474 to 199074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,297 DEBUG Processing 705/1000 atomic regions from SNP 211284 to 211884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,327 DEBUG Processing 828/834 atomic regions from SNP 248127 to 248727 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,403 DEBUG Processing 819/858 atomic regions from SNP 245471 to 246071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,509 DEBUG Processing 663/1109 atomic regions from SNP 198774 to 199374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,560 DEBUG Processing 706/1000 atomic regions from SNP 211584 to 212184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,569 DEBUG Processing 829/834 atomic regions from SNP 248427 to 249027 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,636 DEBUG Processing 820/858 atomic regions from SNP 245771 to 246371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,791 DEBUG Processing 664/1109 atomic regions from SNP 199074 to 199674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,816 DEBUG Processing 830/834 atomic regions from SNP 248727 to 249327 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,829 DEBUG Processing 707/1000 atomic regions from SNP 211884 to 212484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,867 DEBUG Processing 821/858 atomic regions from SNP 246071 to 246671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,061 DEBUG Processing 831/834 atomic regions from SNP 249027 to 249627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,070 DEBUG Processing 665/1109 atomic regions from SNP 199374 to 199974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,094 DEBUG Processing 708/1000 atomic regions from SNP 212184 to 212784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,103 DEBUG Processing 822/858 atomic regions from SNP 246371 to 246971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,313 DEBUG Processing 832/834 atomic regions from SNP 249327 to 249927 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,343 DEBUG Processing 823/858 atomic regions from SNP 246671 to 247271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,349 DEBUG Processing 666/1109 atomic regions from SNP 199674 to 200274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,365 DEBUG Processing 709/1000 atomic regions from SNP 212484 to 213084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,563 DEBUG Processing 833/834 atomic regions from SNP 249627 to 250227 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,587 DEBUG Processing 824/858 atomic regions from SNP 246971 to 247571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,627 DEBUG Processing 667/1109 atomic regions from SNP 199974 to 200574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,636 DEBUG Processing 710/1000 atomic regions from SNP 212784 to 213384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,819 DEBUG Processing 825/858 atomic regions from SNP 247271 to 247871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,835 DEBUG Processing 834/834 atomic regions from SNP 249927 to 250527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,895 DEBUG Processing 668/1109 atomic regions from SNP 200274 to 200874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,908 DEBUG Processing 711/1000 atomic regions from SNP 213084 to 213684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,989 DEBUG Unique SNPs positions in subchromosome 1: 250528 2025-01-31 09:43:54,050 DEBUG Processing 826/858 atomic regions from SNP 247571 to 248171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,162 DEBUG Processing 669/1109 atomic regions from SNP 200574 to 201174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,181 DEBUG Processing 712/1000 atomic regions from SNP 213384 to 213984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,279 DEBUG Processing 827/858 atomic regions from SNP 247871 to 248471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,405 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:43:54,428 DEBUG Processing 670/1109 atomic regions from SNP 200874 to 201474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,455 DEBUG Processing 713/1000 atomic regions from SNP 213684 to 214284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,512 DEBUG Processing 828/858 atomic regions from SNP 248171 to 248771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,701 DEBUG Processing 671/1109 atomic regions from SNP 201174 to 201774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,734 DEBUG Processing 714/1000 atomic regions from SNP 213984 to 214584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,752 DEBUG Processing 829/858 atomic regions from SNP 248471 to 249071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,970 DEBUG Processing 672/1109 atomic regions from SNP 201474 to 202074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,995 DEBUG Processing 830/858 atomic regions from SNP 248771 to 249371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,015 DEBUG Processing 715/1000 atomic regions from SNP 214284 to 214884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,245 DEBUG Processing 831/858 atomic regions from SNP 249071 to 249671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,246 DEBUG Processing 673/1109 atomic regions from SNP 201774 to 202374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,302 DEBUG Processing 716/1000 atomic regions from SNP 214584 to 215184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,493 DEBUG Processing 832/858 atomic regions from SNP 249371 to 249971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,529 DEBUG Processing 674/1109 atomic regions from SNP 202074 to 202674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,567 DEBUG Processing 717/1000 atomic regions from SNP 214884 to 215484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,739 DEBUG Processing 833/858 atomic regions from SNP 249671 to 250271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,809 DEBUG Processing 675/1109 atomic regions from SNP 202374 to 202974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,835 DEBUG Processing 718/1000 atomic regions from SNP 215184 to 215784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,974 DEBUG Processing 834/858 atomic regions from SNP 249971 to 250571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,075 DEBUG Processing 676/1109 atomic regions from SNP 202674 to 203274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,092 DEBUG Processing 719/1000 atomic regions from SNP 215484 to 216084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,202 DEBUG Processing 835/858 atomic regions from SNP 250271 to 250871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,338 DEBUG Processing 677/1109 atomic regions from SNP 202974 to 203574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,348 DEBUG Processing 720/1000 atomic regions from SNP 215784 to 216384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,431 DEBUG Processing 836/858 atomic regions from SNP 250571 to 251171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,603 DEBUG Processing 721/1000 atomic regions from SNP 216084 to 216684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,607 DEBUG Processing 678/1109 atomic regions from SNP 203274 to 203874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,658 DEBUG Processing 837/858 atomic regions from SNP 250871 to 251471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,861 DEBUG Processing 722/1000 atomic regions from SNP 216384 to 216984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,872 DEBUG Processing 679/1109 atomic regions from SNP 203574 to 204174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,885 DEBUG Processing 838/858 atomic regions from SNP 251171 to 251771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,015 DEBUG Subchromosome time: 177.68917282205075, subchromosome SNPs: 190219 2025-01-31 09:43:57,015 DEBUG Estimated BADs: [0.55, 1.10, 0.37, 2.21, 0.55, 3.31, 6.63, 2.21, 0.37, 1.10, 0.28, 0.55, 0.18, 1.10, 0.11, 0.55, 2.21, 3.31, 1.10, 2.21, 4.42] SNP counts: [8885, 14590, 24341, 1242, 10926, 3038, 508, 10691, 6296, 17986, 24617, 16192, 3908, 34503, 2052, 1913, 29061, 19295, 7138, 13369, 2690] SNP IDs counts: [8885, 14590, 24341, 1242, 10926, 3038, 508, 10691, 6296, 17986, 24617, 16192, 3908, 34503, 2052, 1913, 29061, 19295, 7138, 13369, 2690] Critical gap: 695912bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.64Mbp, 17.27Mbp, 32.58Mbp, 33.24Mbp, 40.13Mbp, 41.86Mbp[0.87Mbp], 43.06Mbp, 48.80Mbp, 52.69Mbp, 64.50Mbp, 80.41Mbp, 89.82Mbp, 92.37Mbp, 112.01Mbp, 113.86Mbp, 115.04Mbp, 131.71Mbp, 141.83Mbp, 147.85Mbp, 154.85Mbp, 156.51Mbp] 2025-01-31 09:43:57,016 DEBUG chr4 time: 177.68985912494827 s 2025-01-31 09:43:57,118 DEBUG Processing 839/858 atomic regions from SNP 251471 to 252071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,121 DEBUG Processing 723/1000 atomic regions from SNP 216684 to 217284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,138 DEBUG Processing 680/1109 atomic regions from SNP 203874 to 204474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,161 DEBUG chr4: Fitting background model for 21 segments 2025-01-31 09:43:57,359 DEBUG Processing 840/858 atomic regions from SNP 251771 to 252371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,387 DEBUG Processing 724/1000 atomic regions from SNP 216984 to 217584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,416 DEBUG Processing 681/1109 atomic regions from SNP 204174 to 204774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,601 DEBUG Processing 841/858 atomic regions from SNP 252071 to 252671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,656 DEBUG Processing 725/1000 atomic regions from SNP 217284 to 217884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,700 DEBUG Processing 682/1109 atomic regions from SNP 204474 to 205074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,856 DEBUG Processing 842/858 atomic regions from SNP 252371 to 252971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,928 DEBUG Processing 726/1000 atomic regions from SNP 217584 to 218184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,980 DEBUG Processing 683/1109 atomic regions from SNP 204774 to 205374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,094 DEBUG Processing 843/858 atomic regions from SNP 252671 to 253271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,204 DEBUG Processing 727/1000 atomic regions from SNP 217884 to 218484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,254 DEBUG Processing 684/1109 atomic regions from SNP 205074 to 205674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,331 DEBUG Processing 844/858 atomic regions from SNP 252971 to 253571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,474 DEBUG Processing 728/1000 atomic regions from SNP 218184 to 218784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,526 DEBUG Processing 685/1109 atomic regions from SNP 205374 to 205974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,562 DEBUG Processing 845/858 atomic regions from SNP 253271 to 253871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,744 DEBUG Processing 729/1000 atomic regions from SNP 218484 to 219084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,794 DEBUG Processing 846/858 atomic regions from SNP 253571 to 254171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,797 DEBUG Processing 686/1109 atomic regions from SNP 205674 to 206274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,013 DEBUG Processing 730/1000 atomic regions from SNP 218784 to 219384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,029 DEBUG Processing 847/858 atomic regions from SNP 253871 to 254471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,066 DEBUG Processing 687/1109 atomic regions from SNP 205974 to 206574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,264 DEBUG Processing 848/858 atomic regions from SNP 254171 to 254771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,283 DEBUG Processing 731/1000 atomic regions from SNP 219084 to 219684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,336 DEBUG Processing 688/1109 atomic regions from SNP 206274 to 206874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,507 DEBUG Processing 849/858 atomic regions from SNP 254471 to 255071 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,557 DEBUG Processing 732/1000 atomic regions from SNP 219384 to 219984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,618 DEBUG Processing 689/1109 atomic regions from SNP 206574 to 207174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,745 DEBUG Processing 850/858 atomic regions from SNP 254771 to 255371 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,835 DEBUG Processing 733/1000 atomic regions from SNP 219684 to 220284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,901 DEBUG Processing 690/1109 atomic regions from SNP 206874 to 207474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,986 DEBUG Processing 851/858 atomic regions from SNP 255071 to 255671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,160 DEBUG Processing 734/1000 atomic regions from SNP 219984 to 220584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,219 DEBUG Processing 691/1109 atomic regions from SNP 207174 to 207774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,234 DEBUG Processing 852/858 atomic regions from SNP 255371 to 255971 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,483 DEBUG Processing 735/1000 atomic regions from SNP 220284 to 220884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,563 DEBUG Processing 692/1109 atomic regions from SNP 207474 to 208074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,576 DEBUG Processing 853/858 atomic regions from SNP 255671 to 256271 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,853 DEBUG Processing 736/1000 atomic regions from SNP 220584 to 221184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,920 DEBUG Processing 693/1109 atomic regions from SNP 207774 to 208374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,951 DEBUG Processing 854/858 atomic regions from SNP 255971 to 256571 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,165 DEBUG Processing 737/1000 atomic regions from SNP 220884 to 221484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,214 DEBUG Processing 694/1109 atomic regions from SNP 208074 to 208674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,238 DEBUG Processing 855/858 atomic regions from SNP 256271 to 256871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,480 DEBUG Processing 856/858 atomic regions from SNP 256571 to 257171 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,483 DEBUG Processing 738/1000 atomic regions from SNP 221184 to 221784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,524 DEBUG Processing 695/1109 atomic regions from SNP 208374 to 208974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,737 DEBUG Processing 857/858 atomic regions from SNP 256871 to 257471 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,790 DEBUG Processing 739/1000 atomic regions from SNP 221484 to 222084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,814 DEBUG Processing 696/1109 atomic regions from SNP 208674 to 209274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,086 DEBUG Processing 858/858 atomic regions from SNP 257171 to 257771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,157 DEBUG Processing 740/1000 atomic regions from SNP 221784 to 222384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,213 DEBUG Processing 697/1109 atomic regions from SNP 208974 to 209574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,414 DEBUG Unique SNPs positions in subchromosome 1: 257772 2025-01-31 09:44:02,605 DEBUG Processing 741/1000 atomic regions from SNP 222084 to 222684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,664 DEBUG Processing 698/1109 atomic regions from SNP 209274 to 209874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,110 DEBUG Processing 742/1000 atomic regions from SNP 222384 to 222984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,152 DEBUG Processing 699/1109 atomic regions from SNP 209574 to 210174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,405 DEBUG Processing 743/1000 atomic regions from SNP 222684 to 223284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,455 DEBUG Processing 700/1109 atomic regions from SNP 209874 to 210474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,771 DEBUG Processing 744/1000 atomic regions from SNP 222984 to 223584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,831 DEBUG Processing 701/1109 atomic regions from SNP 210174 to 210774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,212 DEBUG Processing 745/1000 atomic regions from SNP 223284 to 223884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,251 DEBUG Processing 702/1109 atomic regions from SNP 210474 to 211074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,746 DEBUG Processing 746/1000 atomic regions from SNP 223584 to 224184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,821 DEBUG Processing 703/1109 atomic regions from SNP 210774 to 211374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,934 DEBUG Subchromosome time: 239.9073874290334, subchromosome SNPs: 250528 2025-01-31 09:44:04,935 DEBUG Estimated BADs: [1.00, 0.25, 1.00, 2.99, 1.00, 1.99, 1.00, 0.50, 0.17, 1.00, 0.20, 1.00, 0.17, 0.50, 1.00, 1.99, 3.98, 1.00, 2.99, 1.00, 4.98, 0.50, 2.99, 1.99] SNP counts: [4919, 21224, 4409, 3896, 8322, 11378, 5955, 26114, 9894, 11408, 4176, 12023, 7529, 14669, 16916, 17920, 3272, 8766, 9845, 7971, 736, 7285, 7508, 24393] SNP IDs counts: [4919, 21224, 4409, 3896, 8322, 11378, 5955, 26114, 9894, 11408, 4176, 12023, 7529, 14669, 16916, 17920, 3272, 8766, 9845, 7971, 736, 7285, 7508, 24393] Critical gap: 682629bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.94Mbp, 20.87Mbp, 23.42Mbp, 25.54Mbp, 30.46Mbp, 36.57Mbp, 39.93Mbp, 55.44Mbp, 62.16Mbp, 68.67Mbp, 71.40Mbp, 78.07Mbp, 83.05Mbp, 91.96Mbp, 103.66Mbp, 113.72Mbp, 115.45Mbp, 120.09Mbp, 125.35Mbp, 129.72Mbp, 130.16Mbp, 134.17Mbp, 138.29Mbp, 151.83Mbp] 2025-01-31 09:44:04,935 DEBUG chr5 time: 239.9080075189704 s 2025-01-31 09:44:05,257 DEBUG Processing 747/1000 atomic regions from SNP 223884 to 224484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,352 DEBUG chr5: Fitting background model for 24 segments 2025-01-31 09:44:05,394 DEBUG Processing 704/1109 atomic regions from SNP 211074 to 211674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,808 DEBUG Processing 748/1000 atomic regions from SNP 224184 to 224784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,981 DEBUG Processing 705/1109 atomic regions from SNP 211374 to 211974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,467 DEBUG Processing 749/1000 atomic regions from SNP 224484 to 225084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,568 DEBUG Processing 706/1109 atomic regions from SNP 211674 to 212274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,842 DEBUG Processing 750/1000 atomic regions from SNP 224784 to 225384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,954 DEBUG Processing 707/1109 atomic regions from SNP 211974 to 212574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,237 DEBUG Processing 751/1000 atomic regions from SNP 225084 to 225684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,463 DEBUG Processing 708/1109 atomic regions from SNP 212274 to 212874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,641 DEBUG Processing 752/1000 atomic regions from SNP 225384 to 225984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,098 DEBUG Processing 709/1109 atomic regions from SNP 212574 to 213174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,184 DEBUG Processing 753/1000 atomic regions from SNP 225684 to 226284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,625 DEBUG Processing 710/1109 atomic regions from SNP 212874 to 213474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,655 DEBUG Processing 754/1000 atomic regions from SNP 225984 to 226584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,946 DEBUG Processing 711/1109 atomic regions from SNP 213174 to 213774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,966 DEBUG Processing 755/1000 atomic regions from SNP 226284 to 226884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,387 DEBUG Processing 712/1109 atomic regions from SNP 213474 to 214074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,410 DEBUG Processing 756/1000 atomic regions from SNP 226584 to 227184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,733 DEBUG Subchromosome time: 242.82455564301927, subchromosome SNPs: 257772 2025-01-31 09:44:09,734 DEBUG Estimated BADs: [0.59, 2.37, 0.59, 1.18, 0.59, 7.10, 1.18, 0.59, 1.18, 2.37, 8.28, 1.18, 9.47, 2.37, 3.55, 0.59, 5.92, 1.18, 2.37, 1.18, 5.92, 1.18, 0.59, 0.17, 0.59] SNP counts: [24771, 1571, 13542, 9489, 25058, 1040, 29403, 16891, 7762, 6905, 5036, 5698, 4203, 6297, 18290, 9321, 589, 7926, 17350, 7912, 718, 7184, 11456, 5936, 13424] SNP IDs counts: [24771, 1571, 13542, 9489, 25058, 1040, 29403, 16891, 7762, 6905, 5036, 5698, 4203, 6297, 18290, 9321, 589, 7926, 17350, 7912, 718, 7184, 11456, 5936, 13424] Critical gap: 710140bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 19.15Mbp, 20.03Mbp, 28.35Mbp, 33.84Mbp, 51.15Mbp, 51.70Mbp, 68.98Mbp, 79.50Mbp, 84.02Mbp, 87.73Mbp, 90.44Mbp, 94.37Mbp, 96.72Mbp, 100.41Mbp, 110.35Mbp, 116.31Mbp, 116.62Mbp, 121.15Mbp, 130.69Mbp, 135.28Mbp, 135.65Mbp, 139.87Mbp, 147.14Mbp, 151.33Mbp, 160.04Mbp] 2025-01-31 09:44:09,734 DEBUG chr3 time: 242.82521488599014 s 2025-01-31 09:44:09,956 DEBUG Processing 713/1109 atomic regions from SNP 213774 to 214374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,980 DEBUG Processing 757/1000 atomic regions from SNP 226884 to 227484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,160 DEBUG chr3: Fitting background model for 25 segments 2025-01-31 09:44:10,582 DEBUG Processing 714/1109 atomic regions from SNP 214074 to 214674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,603 DEBUG Processing 758/1000 atomic regions from SNP 227184 to 227784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,122 DEBUG Processing 715/1109 atomic regions from SNP 214374 to 214974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,150 DEBUG Processing 759/1000 atomic regions from SNP 227484 to 228084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,606 DEBUG Processing 716/1109 atomic regions from SNP 214674 to 215274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,635 DEBUG Processing 760/1000 atomic regions from SNP 227784 to 228384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,956 DEBUG Processing 717/1109 atomic regions from SNP 214974 to 215574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,035 DEBUG Processing 761/1000 atomic regions from SNP 228084 to 228684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,257 DEBUG Processing 718/1109 atomic regions from SNP 215274 to 215874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,482 DEBUG Processing 762/1000 atomic regions from SNP 228384 to 228984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,676 DEBUG Processing 719/1109 atomic regions from SNP 215574 to 216174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,836 DEBUG Processing 763/1000 atomic regions from SNP 228684 to 229284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,004 DEBUG Processing 720/1109 atomic regions from SNP 215874 to 216474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,223 DEBUG Processing 764/1000 atomic regions from SNP 228984 to 229584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,368 DEBUG Processing 721/1109 atomic regions from SNP 216174 to 216774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,657 DEBUG Processing 765/1000 atomic regions from SNP 229284 to 229884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,702 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:44:13,760 DEBUG Processing 722/1109 atomic regions from SNP 216474 to 217074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,768 DEBUG chr6: Signal quantile: 0.994. signal threshold: 10. Best RMSEA: 0.023 2025-01-31 09:44:13,984 DEBUG Processing 766/1000 atomic regions from SNP 229584 to 230184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,073 DEBUG Processing 723/1109 atomic regions from SNP 216774 to 217374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,264 DEBUG Processing 767/1000 atomic regions from SNP 229884 to 230484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,347 DEBUG Processing 724/1109 atomic regions from SNP 217074 to 217674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,548 DEBUG Processing 768/1000 atomic regions from SNP 230184 to 230784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,648 DEBUG Processing 725/1109 atomic regions from SNP 217374 to 217974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,837 DEBUG Processing 769/1000 atomic regions from SNP 230484 to 231084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,924 DEBUG Processing 726/1109 atomic regions from SNP 217674 to 218274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,112 DEBUG Processing 770/1000 atomic regions from SNP 230784 to 231384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,193 DEBUG Processing 727/1109 atomic regions from SNP 217974 to 218574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,382 DEBUG Processing 771/1000 atomic regions from SNP 231084 to 231684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,464 DEBUG Processing 728/1109 atomic regions from SNP 218274 to 218874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,651 DEBUG Processing 772/1000 atomic regions from SNP 231384 to 231984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,763 DEBUG Processing 729/1109 atomic regions from SNP 218574 to 219174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,918 DEBUG Processing 773/1000 atomic regions from SNP 231684 to 232284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,055 DEBUG Processing 730/1109 atomic regions from SNP 218874 to 219474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,203 DEBUG Processing 774/1000 atomic regions from SNP 231984 to 232584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,331 DEBUG Processing 731/1109 atomic regions from SNP 219174 to 219774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,475 DEBUG Processing 775/1000 atomic regions from SNP 232284 to 232884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,624 DEBUG Processing 732/1109 atomic regions from SNP 219474 to 220074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,717 DEBUG chr6 total SNP count: 249848 2025-01-31 09:44:16,717 DEBUG chr6 length: 149736546 2025-01-31 09:44:16,717 DEBUG ----------------------------------------- 2025-01-31 09:44:16,717 INFO Processing SNPs in chr6 2025-01-31 09:44:16,741 DEBUG Processing 776/1000 atomic regions from SNP 232584 to 233184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,889 DEBUG Processing 733/1109 atomic regions from SNP 219774 to 220374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,969 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 249848)] 2025-01-31 09:44:17,002 DEBUG Processing 777/1000 atomic regions from SNP 232884 to 233484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,141 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:17,164 DEBUG Processing 734/1109 atomic regions from SNP 220074 to 220674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,272 DEBUG Processing 778/1000 atomic regions from SNP 233184 to 233784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,447 DEBUG Processing 735/1109 atomic regions from SNP 220374 to 220974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,543 DEBUG Processing 779/1000 atomic regions from SNP 233484 to 234084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,724 DEBUG Processing 736/1109 atomic regions from SNP 220674 to 221274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,809 DEBUG Processing 780/1000 atomic regions from SNP 233784 to 234384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,027 DEBUG Processing 737/1109 atomic regions from SNP 220974 to 221574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,088 DEBUG Processing 781/1000 atomic regions from SNP 234084 to 234684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,311 DEBUG Processing 738/1109 atomic regions from SNP 221274 to 221874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,363 DEBUG Processing 782/1000 atomic regions from SNP 234384 to 234984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,591 DEBUG Processing 739/1109 atomic regions from SNP 221574 to 222174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,637 DEBUG Processing 783/1000 atomic regions from SNP 234684 to 235284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,869 DEBUG Processing 740/1109 atomic regions from SNP 221874 to 222474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,903 DEBUG Processing 784/1000 atomic regions from SNP 234984 to 235584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,167 DEBUG Processing 741/1109 atomic regions from SNP 222174 to 222774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,169 DEBUG Processing 785/1000 atomic regions from SNP 235284 to 235884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,432 DEBUG Processing 786/1000 atomic regions from SNP 235584 to 236184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,465 DEBUG Processing 742/1109 atomic regions from SNP 222474 to 223074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,691 DEBUG Processing 787/1000 atomic regions from SNP 235884 to 236484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,747 DEBUG Processing 743/1109 atomic regions from SNP 222774 to 223374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,953 DEBUG Processing 788/1000 atomic regions from SNP 236184 to 236784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,027 DEBUG Processing 744/1109 atomic regions from SNP 223074 to 223674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,228 DEBUG Processing 789/1000 atomic regions from SNP 236484 to 237084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,319 DEBUG Processing 745/1109 atomic regions from SNP 223374 to 223974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,497 DEBUG Processing 790/1000 atomic regions from SNP 236784 to 237384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,617 DEBUG Processing 746/1109 atomic regions from SNP 223674 to 224274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,764 DEBUG Processing 791/1000 atomic regions from SNP 237084 to 237684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,912 DEBUG Processing 747/1109 atomic regions from SNP 223974 to 224574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,026 DEBUG Processing 792/1000 atomic regions from SNP 237384 to 237984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,218 DEBUG Processing 748/1109 atomic regions from SNP 224274 to 224874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,291 DEBUG Processing 793/1000 atomic regions from SNP 237684 to 238284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,504 DEBUG Processing 749/1109 atomic regions from SNP 224574 to 225174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,555 DEBUG Processing 794/1000 atomic regions from SNP 237984 to 238584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,803 DEBUG Processing 750/1109 atomic regions from SNP 224874 to 225474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,813 DEBUG Processing 795/1000 atomic regions from SNP 238284 to 238884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,073 DEBUG Processing 796/1000 atomic regions from SNP 238584 to 239184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,094 DEBUG Processing 751/1109 atomic regions from SNP 225174 to 225774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,333 DEBUG Processing 797/1000 atomic regions from SNP 238884 to 239484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,365 DEBUG Processing 752/1109 atomic regions from SNP 225474 to 226074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,591 DEBUG Processing 798/1000 atomic regions from SNP 239184 to 239784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,630 DEBUG Processing 753/1109 atomic regions from SNP 225774 to 226374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,847 DEBUG Processing 799/1000 atomic regions from SNP 239484 to 240084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,902 DEBUG Processing 754/1109 atomic regions from SNP 226074 to 226674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,103 DEBUG Processing 800/1000 atomic regions from SNP 239784 to 240384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,188 DEBUG Processing 755/1109 atomic regions from SNP 226374 to 226974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,361 DEBUG Processing 801/1000 atomic regions from SNP 240084 to 240684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,463 DEBUG Processing 756/1109 atomic regions from SNP 226674 to 227274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,618 DEBUG Processing 802/1000 atomic regions from SNP 240384 to 240984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,740 DEBUG Processing 757/1109 atomic regions from SNP 226974 to 227574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,880 DEBUG Processing 803/1000 atomic regions from SNP 240684 to 241284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,033 DEBUG Processing 758/1109 atomic regions from SNP 227274 to 227874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,142 DEBUG Processing 804/1000 atomic regions from SNP 240984 to 241584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,333 DEBUG Processing 759/1109 atomic regions from SNP 227574 to 228174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,409 DEBUG Processing 805/1000 atomic regions from SNP 241284 to 241884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,623 DEBUG Processing 760/1109 atomic regions from SNP 227874 to 228474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,677 DEBUG Processing 806/1000 atomic regions from SNP 241584 to 242184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,905 DEBUG Processing 761/1109 atomic regions from SNP 228174 to 228774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,947 DEBUG Processing 807/1000 atomic regions from SNP 241884 to 242484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,177 DEBUG Processing 762/1109 atomic regions from SNP 228474 to 229074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,214 DEBUG Processing 808/1000 atomic regions from SNP 242184 to 242784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,447 DEBUG Processing 763/1109 atomic regions from SNP 228774 to 229374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,478 DEBUG Processing 809/1000 atomic regions from SNP 242484 to 243084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,716 DEBUG Processing 764/1109 atomic regions from SNP 229074 to 229674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,743 DEBUG Processing 810/1000 atomic regions from SNP 242784 to 243384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,986 DEBUG Processing 765/1109 atomic regions from SNP 229374 to 229974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,012 DEBUG Processing 811/1000 atomic regions from SNP 243084 to 243684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,257 DEBUG Processing 766/1109 atomic regions from SNP 229674 to 230274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,279 DEBUG Processing 812/1000 atomic regions from SNP 243384 to 243984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,536 DEBUG Processing 767/1109 atomic regions from SNP 229974 to 230574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,544 DEBUG Processing 813/1000 atomic regions from SNP 243684 to 244284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,806 DEBUG Processing 768/1109 atomic regions from SNP 230274 to 230874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,810 DEBUG Processing 814/1000 atomic regions from SNP 243984 to 244584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,071 DEBUG Processing 815/1000 atomic regions from SNP 244284 to 244884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,073 DEBUG Processing 769/1109 atomic regions from SNP 230574 to 231174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,333 DEBUG Processing 816/1000 atomic regions from SNP 244584 to 245184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,337 DEBUG Processing 770/1109 atomic regions from SNP 230874 to 231474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,599 DEBUG Processing 817/1000 atomic regions from SNP 244884 to 245484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,603 DEBUG Processing 771/1109 atomic regions from SNP 231174 to 231774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,868 DEBUG Processing 818/1000 atomic regions from SNP 245184 to 245784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,868 DEBUG Processing 772/1109 atomic regions from SNP 231474 to 232074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,140 DEBUG Processing 819/1000 atomic regions from SNP 245484 to 246084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,147 DEBUG Processing 773/1109 atomic regions from SNP 231774 to 232374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,409 DEBUG Processing 820/1000 atomic regions from SNP 245784 to 246384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,415 DEBUG Processing 774/1109 atomic regions from SNP 232074 to 232674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,675 DEBUG Processing 821/1000 atomic regions from SNP 246084 to 246684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,680 DEBUG Processing 775/1109 atomic regions from SNP 232374 to 232974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,936 DEBUG Processing 822/1000 atomic regions from SNP 246384 to 246984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,939 DEBUG Processing 776/1109 atomic regions from SNP 232674 to 233274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,200 DEBUG Processing 777/1109 atomic regions from SNP 232974 to 233574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,201 DEBUG Processing 823/1000 atomic regions from SNP 246684 to 247284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,457 DEBUG Processing 778/1109 atomic regions from SNP 233274 to 233874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,464 DEBUG Processing 824/1000 atomic regions from SNP 246984 to 247584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,686 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:44:29,719 DEBUG Processing 779/1109 atomic regions from SNP 233574 to 234174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,725 DEBUG Processing 825/1000 atomic regions from SNP 247284 to 247884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,993 DEBUG Processing 780/1109 atomic regions from SNP 233874 to 234474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,997 DEBUG Processing 826/1000 atomic regions from SNP 247584 to 248184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,268 DEBUG Processing 781/1109 atomic regions from SNP 234174 to 234774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,268 DEBUG Processing 827/1000 atomic regions from SNP 247884 to 248484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,531 DEBUG Processing 782/1109 atomic regions from SNP 234474 to 235074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,538 DEBUG Processing 828/1000 atomic regions from SNP 248184 to 248784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,792 DEBUG Processing 783/1109 atomic regions from SNP 234774 to 235374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,798 DEBUG Processing 829/1000 atomic regions from SNP 248484 to 249084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,059 DEBUG Processing 784/1109 atomic regions from SNP 235074 to 235674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,063 DEBUG Processing 830/1000 atomic regions from SNP 248784 to 249384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,317 DEBUG Processing 785/1109 atomic regions from SNP 235374 to 235974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,324 DEBUG Processing 831/1000 atomic regions from SNP 249084 to 249684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,579 DEBUG Processing 786/1109 atomic regions from SNP 235674 to 236274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,589 DEBUG Processing 832/1000 atomic regions from SNP 249384 to 249984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,848 DEBUG Processing 787/1109 atomic regions from SNP 235974 to 236574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,851 DEBUG Processing 833/1000 atomic regions from SNP 249684 to 250284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,114 DEBUG Processing 834/1000 atomic regions from SNP 249984 to 250584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,114 DEBUG Processing 788/1109 atomic regions from SNP 236274 to 236874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,380 DEBUG Processing 835/1000 atomic regions from SNP 250284 to 250884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,384 DEBUG Processing 789/1109 atomic regions from SNP 236574 to 237174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,651 DEBUG Processing 790/1109 atomic regions from SNP 236874 to 237474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,651 DEBUG Processing 836/1000 atomic regions from SNP 250584 to 251184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,929 DEBUG Processing 837/1000 atomic regions from SNP 250884 to 251484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,930 DEBUG Processing 791/1109 atomic regions from SNP 237174 to 237774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,205 DEBUG Processing 792/1109 atomic regions from SNP 237474 to 238074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,211 DEBUG Processing 838/1000 atomic regions from SNP 251184 to 251784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,471 DEBUG Processing 793/1109 atomic regions from SNP 237774 to 238374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,484 DEBUG Processing 839/1000 atomic regions from SNP 251484 to 252084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,733 DEBUG Processing 794/1109 atomic regions from SNP 238074 to 238674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,757 DEBUG Processing 840/1000 atomic regions from SNP 251784 to 252384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,996 DEBUG Processing 795/1109 atomic regions from SNP 238374 to 238974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,028 DEBUG Processing 841/1000 atomic regions from SNP 252084 to 252684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,257 DEBUG Processing 796/1109 atomic regions from SNP 238674 to 239274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,297 DEBUG Processing 842/1000 atomic regions from SNP 252384 to 252984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,514 DEBUG Processing 797/1109 atomic regions from SNP 238974 to 239574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,563 DEBUG Processing 843/1000 atomic regions from SNP 252684 to 253284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,775 DEBUG Processing 798/1109 atomic regions from SNP 239274 to 239874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,827 DEBUG Processing 844/1000 atomic regions from SNP 252984 to 253584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,040 DEBUG Processing 799/1109 atomic regions from SNP 239574 to 240174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,086 DEBUG Processing 845/1000 atomic regions from SNP 253284 to 253884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,304 DEBUG Processing 800/1109 atomic regions from SNP 239874 to 240474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,347 DEBUG Processing 846/1000 atomic regions from SNP 253584 to 254184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,572 DEBUG Processing 801/1109 atomic regions from SNP 240174 to 240774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,610 DEBUG Processing 847/1000 atomic regions from SNP 253884 to 254484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,842 DEBUG Processing 802/1109 atomic regions from SNP 240474 to 241074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,880 DEBUG Processing 848/1000 atomic regions from SNP 254184 to 254784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,123 DEBUG Processing 803/1109 atomic regions from SNP 240774 to 241374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,151 DEBUG Processing 849/1000 atomic regions from SNP 254484 to 255084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,398 DEBUG Processing 804/1109 atomic regions from SNP 241074 to 241674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,420 DEBUG Processing 850/1000 atomic regions from SNP 254784 to 255384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,675 DEBUG Processing 805/1109 atomic regions from SNP 241374 to 241974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,694 DEBUG Processing 851/1000 atomic regions from SNP 255084 to 255684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,956 DEBUG Processing 806/1109 atomic regions from SNP 241674 to 242274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,971 DEBUG Processing 852/1000 atomic regions from SNP 255384 to 255984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,218 DEBUG Processing 807/1109 atomic regions from SNP 241974 to 242574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,240 DEBUG Processing 853/1000 atomic regions from SNP 255684 to 256284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,477 DEBUG Processing 808/1109 atomic regions from SNP 242274 to 242874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,521 DEBUG Processing 854/1000 atomic regions from SNP 255984 to 256584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,741 DEBUG Processing 809/1109 atomic regions from SNP 242574 to 243174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,791 DEBUG Processing 855/1000 atomic regions from SNP 256284 to 256884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,999 DEBUG Processing 810/1109 atomic regions from SNP 242874 to 243474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,058 DEBUG Processing 856/1000 atomic regions from SNP 256584 to 257184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,258 DEBUG Processing 811/1109 atomic regions from SNP 243174 to 243774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,332 DEBUG Processing 857/1000 atomic regions from SNP 256884 to 257484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,517 DEBUG Processing 812/1109 atomic regions from SNP 243474 to 244074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,605 DEBUG Processing 858/1000 atomic regions from SNP 257184 to 257784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,780 DEBUG Processing 813/1109 atomic regions from SNP 243774 to 244374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,885 DEBUG Processing 859/1000 atomic regions from SNP 257484 to 258084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,040 DEBUG Processing 814/1109 atomic regions from SNP 244074 to 244674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,158 DEBUG Processing 860/1000 atomic regions from SNP 257784 to 258384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,302 DEBUG Processing 815/1109 atomic regions from SNP 244374 to 244974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,451 DEBUG Processing 861/1000 atomic regions from SNP 258084 to 258684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,567 DEBUG Processing 816/1109 atomic regions from SNP 244674 to 245274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,752 DEBUG Processing 862/1000 atomic regions from SNP 258384 to 258984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,838 DEBUG Processing 817/1109 atomic regions from SNP 244974 to 245574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,031 DEBUG Processing 863/1000 atomic regions from SNP 258684 to 259284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,119 DEBUG Processing 818/1109 atomic regions from SNP 245274 to 245874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,328 DEBUG Processing 864/1000 atomic regions from SNP 258984 to 259584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,391 DEBUG Processing 819/1109 atomic regions from SNP 245574 to 246174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,614 DEBUG Processing 865/1000 atomic regions from SNP 259284 to 259884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,663 DEBUG Processing 820/1109 atomic regions from SNP 245874 to 246474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,882 DEBUG Processing 866/1000 atomic regions from SNP 259584 to 260184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,939 DEBUG Processing 821/1109 atomic regions from SNP 246174 to 246774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,154 DEBUG Processing 867/1000 atomic regions from SNP 259884 to 260484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,214 DEBUG Processing 822/1109 atomic regions from SNP 246474 to 247074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,429 DEBUG Processing 868/1000 atomic regions from SNP 260184 to 260784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,489 DEBUG Processing 823/1109 atomic regions from SNP 246774 to 247374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,719 DEBUG Processing 869/1000 atomic regions from SNP 260484 to 261084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,761 DEBUG Processing 824/1109 atomic regions from SNP 247074 to 247674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,989 DEBUG Processing 870/1000 atomic regions from SNP 260784 to 261384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,035 DEBUG Processing 825/1109 atomic regions from SNP 247374 to 247974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,263 DEBUG Processing 871/1000 atomic regions from SNP 261084 to 261684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,307 DEBUG Processing 826/1109 atomic regions from SNP 247674 to 248274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,532 DEBUG Processing 872/1000 atomic regions from SNP 261384 to 261984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,574 DEBUG Processing 827/1109 atomic regions from SNP 247974 to 248574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,796 DEBUG Processing 873/1000 atomic regions from SNP 261684 to 262284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,838 DEBUG Processing 828/1109 atomic regions from SNP 248274 to 248874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,058 DEBUG Processing 874/1000 atomic regions from SNP 261984 to 262584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,103 DEBUG Processing 829/1109 atomic regions from SNP 248574 to 249174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,339 DEBUG Processing 875/1000 atomic regions from SNP 262284 to 262884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,371 DEBUG Processing 830/1109 atomic regions from SNP 248874 to 249474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,624 DEBUG Processing 876/1000 atomic regions from SNP 262584 to 263184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,643 DEBUG Processing 831/1109 atomic regions from SNP 249174 to 249774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,898 DEBUG Processing 877/1000 atomic regions from SNP 262884 to 263484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,918 DEBUG Processing 832/1109 atomic regions from SNP 249474 to 250074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,172 DEBUG Processing 878/1000 atomic regions from SNP 263184 to 263784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,205 DEBUG Processing 833/1109 atomic regions from SNP 249774 to 250374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,442 DEBUG Processing 879/1000 atomic regions from SNP 263484 to 264084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,490 DEBUG Processing 834/1109 atomic regions from SNP 250074 to 250674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,508 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:44:44,711 DEBUG Processing 880/1000 atomic regions from SNP 263784 to 264384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,772 DEBUG Processing 835/1109 atomic regions from SNP 250374 to 250974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,992 DEBUG Processing 881/1000 atomic regions from SNP 264084 to 264684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,056 DEBUG Processing 836/1109 atomic regions from SNP 250674 to 251274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,285 DEBUG Processing 882/1000 atomic regions from SNP 264384 to 264984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,360 DEBUG Processing 837/1109 atomic regions from SNP 250974 to 251574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,408 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:44:45,410 DEBUG chr7: Signal quantile: 0.991. signal threshold: 10. Best RMSEA: 0.015 2025-01-31 09:44:45,552 DEBUG Processing 883/1000 atomic regions from SNP 264684 to 265284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,645 DEBUG Processing 838/1109 atomic regions from SNP 251274 to 251874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,817 DEBUG Processing 884/1000 atomic regions from SNP 264984 to 265584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,926 DEBUG Processing 839/1109 atomic regions from SNP 251574 to 252174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,095 DEBUG Processing 885/1000 atomic regions from SNP 265284 to 265884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,208 DEBUG Processing 840/1109 atomic regions from SNP 251874 to 252474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,369 DEBUG Processing 886/1000 atomic regions from SNP 265584 to 266184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,491 DEBUG Processing 841/1109 atomic regions from SNP 252174 to 252774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,630 DEBUG Processing 887/1000 atomic regions from SNP 265884 to 266484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,776 DEBUG Processing 842/1109 atomic regions from SNP 252474 to 253074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,896 DEBUG Processing 888/1000 atomic regions from SNP 266184 to 266784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,081 DEBUG Processing 843/1109 atomic regions from SNP 252774 to 253374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,174 DEBUG Processing 889/1000 atomic regions from SNP 266484 to 267084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,369 DEBUG Processing 844/1109 atomic regions from SNP 253074 to 253674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,452 DEBUG Processing 890/1000 atomic regions from SNP 266784 to 267384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,642 DEBUG Processing 845/1109 atomic regions from SNP 253374 to 253974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,716 DEBUG Processing 891/1000 atomic regions from SNP 267084 to 267684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,844 DEBUG Segmenting atomic regions: 2025-01-31 09:44:47,927 DEBUG Processing 846/1109 atomic regions from SNP 253674 to 254274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,955 DEBUG Processing 1/831 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:47,984 DEBUG Processing 892/1000 atomic regions from SNP 267384 to 267984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,010 DEBUG chr7 total SNP count: 226817 2025-01-31 09:44:48,010 DEBUG chr7 length: 145441459 2025-01-31 09:44:48,010 DEBUG ----------------------------------------- 2025-01-31 09:44:48,010 INFO Processing SNPs in chr7 2025-01-31 09:44:48,200 DEBUG Processing 2/831 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:48,237 DEBUG Processing 847/1109 atomic regions from SNP 253974 to 254574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,285 DEBUG Processing 893/1000 atomic regions from SNP 267684 to 268284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,451 DEBUG Processing 3/831 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:48,517 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20172), (20172, 20188), (20188, 226817)] 2025-01-31 09:44:48,520 DEBUG Processing 848/1109 atomic regions from SNP 254274 to 254874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,573 DEBUG Processing 894/1000 atomic regions from SNP 267984 to 268584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,622 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:48,683 DEBUG Processing 4/831 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:48,796 DEBUG Processing 849/1109 atomic regions from SNP 254574 to 255174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,845 DEBUG Processing 895/1000 atomic regions from SNP 268284 to 268884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,916 DEBUG Processing 5/831 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,077 DEBUG Processing 850/1109 atomic regions from SNP 254874 to 255474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,119 DEBUG Processing 896/1000 atomic regions from SNP 268584 to 269184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,156 DEBUG Processing 6/831 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,355 DEBUG Processing 851/1109 atomic regions from SNP 255174 to 255774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,399 DEBUG Processing 897/1000 atomic regions from SNP 268884 to 269484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,402 DEBUG Processing 7/831 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,636 DEBUG Processing 852/1109 atomic regions from SNP 255474 to 256074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,652 DEBUG Processing 8/831 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,677 DEBUG Processing 898/1000 atomic regions from SNP 269184 to 269784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,901 DEBUG Processing 9/831 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:49,907 DEBUG Processing 853/1109 atomic regions from SNP 255774 to 256374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,952 DEBUG Processing 899/1000 atomic regions from SNP 269484 to 270084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,151 DEBUG Processing 10/831 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,179 DEBUG Processing 854/1109 atomic regions from SNP 256074 to 256674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,230 DEBUG Processing 900/1000 atomic regions from SNP 269784 to 270384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,399 DEBUG Processing 11/831 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,459 DEBUG Processing 855/1109 atomic regions from SNP 256374 to 256974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,515 DEBUG Processing 901/1000 atomic regions from SNP 270084 to 270684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,633 DEBUG Processing 12/831 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,729 DEBUG Processing 856/1109 atomic regions from SNP 256674 to 257274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,782 DEBUG Processing 902/1000 atomic regions from SNP 270384 to 270984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,869 DEBUG Processing 13/831 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:50,896 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:44:51,003 DEBUG Processing 857/1109 atomic regions from SNP 256974 to 257574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,053 DEBUG Processing 903/1000 atomic regions from SNP 270684 to 271284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,112 DEBUG Processing 14/831 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,115 DEBUG Segmenting atomic regions: 2025-01-31 09:44:51,215 DEBUG Processing 1/66 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:51,286 DEBUG Processing 858/1109 atomic regions from SNP 257274 to 257874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,320 DEBUG Processing 904/1000 atomic regions from SNP 270984 to 271584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,351 DEBUG Processing 15/831 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,448 DEBUG Processing 2/66 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:51,571 DEBUG Processing 859/1109 atomic regions from SNP 257574 to 258174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,589 DEBUG Processing 905/1000 atomic regions from SNP 271284 to 271884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,593 DEBUG Processing 16/831 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,669 DEBUG Processing 3/66 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:51,831 DEBUG Processing 17/831 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:51,846 DEBUG Processing 860/1109 atomic regions from SNP 257874 to 258474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,856 DEBUG Processing 906/1000 atomic regions from SNP 271584 to 272184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,918 DEBUG Processing 4/66 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:52,073 DEBUG Processing 18/831 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,119 DEBUG Processing 861/1109 atomic regions from SNP 258174 to 258774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,122 DEBUG Processing 907/1000 atomic regions from SNP 271884 to 272484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,155 DEBUG Processing 5/66 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:52,313 DEBUG Processing 19/831 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,381 DEBUG Processing 6/66 atomic regions from SNP 1510 to 2111 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:52,383 DEBUG Processing 908/1000 atomic regions from SNP 272184 to 272784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,391 DEBUG Processing 862/1109 atomic regions from SNP 258474 to 259074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,559 DEBUG Processing 20/831 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,617 DEBUG Processing 7/66 atomic regions from SNP 1811 to 2412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:52,649 DEBUG Processing 909/1000 atomic regions from SNP 272484 to 273084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,667 DEBUG Processing 863/1109 atomic regions from SNP 258774 to 259374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,805 DEBUG Processing 21/831 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:52,862 DEBUG Processing 8/66 atomic regions from SNP 2112 to 2713 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:52,914 DEBUG Processing 910/1000 atomic regions from SNP 272784 to 273384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,946 DEBUG Processing 864/1109 atomic regions from SNP 259074 to 259674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,056 DEBUG Processing 22/831 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,119 DEBUG Processing 9/66 atomic regions from SNP 2413 to 3014 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:53,182 DEBUG Processing 911/1000 atomic regions from SNP 273084 to 273684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,225 DEBUG Processing 865/1109 atomic regions from SNP 259374 to 259974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,299 DEBUG Processing 23/831 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,375 DEBUG Processing 10/66 atomic regions from SNP 2714 to 3315 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:53,445 DEBUG Processing 912/1000 atomic regions from SNP 273384 to 273984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,502 DEBUG Processing 866/1109 atomic regions from SNP 259674 to 260274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,536 DEBUG Processing 24/831 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,633 DEBUG Processing 11/66 atomic regions from SNP 3015 to 3616 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:53,708 DEBUG Processing 913/1000 atomic regions from SNP 273684 to 274284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,771 DEBUG Processing 25/831 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:53,805 DEBUG Processing 867/1109 atomic regions from SNP 259974 to 260574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,861 DEBUG Processing 12/66 atomic regions from SNP 3316 to 3917 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:53,977 DEBUG Processing 914/1000 atomic regions from SNP 273984 to 274584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,020 DEBUG Processing 26/831 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,096 DEBUG Processing 13/66 atomic regions from SNP 3617 to 4218 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:54,111 DEBUG Processing 868/1109 atomic regions from SNP 260274 to 260874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,246 DEBUG Processing 915/1000 atomic regions from SNP 274284 to 274884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,275 DEBUG Processing 27/831 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,339 DEBUG Processing 14/66 atomic regions from SNP 3918 to 4519 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:54,407 DEBUG Processing 869/1109 atomic regions from SNP 260574 to 261174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,515 DEBUG Processing 916/1000 atomic regions from SNP 274584 to 275184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,524 DEBUG Processing 28/831 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,573 DEBUG Processing 15/66 atomic regions from SNP 4219 to 4820 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:54,695 DEBUG Processing 870/1109 atomic regions from SNP 260874 to 261474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,768 DEBUG Processing 29/831 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:54,784 DEBUG Processing 917/1000 atomic regions from SNP 274884 to 275484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,806 DEBUG Processing 16/66 atomic regions from SNP 4520 to 5121 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:54,970 DEBUG Processing 871/1109 atomic regions from SNP 261174 to 261774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,005 DEBUG Processing 30/831 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,047 DEBUG Processing 918/1000 atomic regions from SNP 275184 to 275784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,064 DEBUG Processing 17/66 atomic regions from SNP 4821 to 5422 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:55,238 DEBUG Processing 31/831 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,238 DEBUG Processing 872/1109 atomic regions from SNP 261474 to 262074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,315 DEBUG Processing 919/1000 atomic regions from SNP 275484 to 276084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,319 DEBUG Processing 18/66 atomic regions from SNP 5122 to 5723 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:55,468 DEBUG Processing 32/831 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,534 DEBUG Processing 873/1109 atomic regions from SNP 261774 to 262374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,579 DEBUG Processing 19/66 atomic regions from SNP 5423 to 6024 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:55,579 DEBUG Processing 920/1000 atomic regions from SNP 275784 to 276384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,701 DEBUG Processing 33/831 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:55,826 DEBUG Processing 874/1109 atomic regions from SNP 262074 to 262674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,832 DEBUG Processing 20/66 atomic regions from SNP 5724 to 6325 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:55,844 DEBUG Processing 921/1000 atomic regions from SNP 276084 to 276684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,943 DEBUG Processing 34/831 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,069 DEBUG Processing 21/66 atomic regions from SNP 6025 to 6626 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:56,115 DEBUG Processing 875/1109 atomic regions from SNP 262374 to 262974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,118 DEBUG Processing 922/1000 atomic regions from SNP 276384 to 276984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,193 DEBUG Processing 35/831 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,305 DEBUG Processing 22/66 atomic regions from SNP 6326 to 6927 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:56,386 DEBUG Processing 923/1000 atomic regions from SNP 276684 to 277284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,404 DEBUG Processing 876/1109 atomic regions from SNP 262674 to 263274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,441 DEBUG Processing 36/831 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,530 DEBUG Processing 23/66 atomic regions from SNP 6627 to 7228 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:56,650 DEBUG Processing 924/1000 atomic regions from SNP 276984 to 277584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,686 DEBUG Processing 37/831 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,689 DEBUG Processing 877/1109 atomic regions from SNP 262974 to 263574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,759 DEBUG Processing 24/66 atomic regions from SNP 6928 to 7529 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:56,914 DEBUG Processing 925/1000 atomic regions from SNP 277284 to 277884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,929 DEBUG Processing 38/831 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:56,979 DEBUG Processing 878/1109 atomic regions from SNP 263274 to 263874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,989 DEBUG Processing 25/66 atomic regions from SNP 7229 to 7830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:57,175 DEBUG Processing 39/831 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,183 DEBUG Processing 926/1000 atomic regions from SNP 277584 to 278184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,219 DEBUG Processing 26/66 atomic regions from SNP 7530 to 8131 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:57,268 DEBUG Processing 879/1109 atomic regions from SNP 263574 to 264174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,418 DEBUG Processing 40/831 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,444 DEBUG Processing 27/66 atomic regions from SNP 7831 to 8432 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:57,456 DEBUG Processing 927/1000 atomic regions from SNP 277884 to 278484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,550 DEBUG Processing 880/1109 atomic regions from SNP 263874 to 264474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,657 DEBUG Processing 41/831 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,669 DEBUG Processing 28/66 atomic regions from SNP 8132 to 8733 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:57,725 DEBUG Processing 928/1000 atomic regions from SNP 278184 to 278784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,819 DEBUG Processing 881/1109 atomic regions from SNP 264174 to 264774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,896 DEBUG Processing 42/831 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:57,902 DEBUG Processing 29/66 atomic regions from SNP 8433 to 9034 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:57,995 DEBUG Processing 929/1000 atomic regions from SNP 278484 to 279084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,084 DEBUG Processing 882/1109 atomic regions from SNP 264474 to 265074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,131 DEBUG Processing 30/66 atomic regions from SNP 8734 to 9335 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:58,131 DEBUG Processing 43/831 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,269 DEBUG Processing 930/1000 atomic regions from SNP 278784 to 279384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,353 DEBUG Processing 883/1109 atomic regions from SNP 264774 to 265374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,356 DEBUG Processing 31/66 atomic regions from SNP 9035 to 9636 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:58,369 DEBUG Processing 44/831 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,385 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:44:58,387 DEBUG chr10: Signal quantile: 0.993. signal threshold: 9. Best RMSEA: 0.020 2025-01-31 09:44:58,561 DEBUG Processing 931/1000 atomic regions from SNP 279084 to 279684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,582 DEBUG Processing 32/66 atomic regions from SNP 9336 to 9937 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:58,604 DEBUG Processing 45/831 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,625 DEBUG Processing 884/1109 atomic regions from SNP 265074 to 265674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,812 DEBUG Processing 33/66 atomic regions from SNP 9637 to 10238 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:58,841 DEBUG Processing 932/1000 atomic regions from SNP 279384 to 279984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,845 DEBUG Processing 46/831 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:58,895 DEBUG Processing 885/1109 atomic regions from SNP 265374 to 265974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,050 DEBUG Processing 34/66 atomic regions from SNP 9938 to 10539 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:59,097 DEBUG Processing 47/831 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,120 DEBUG Processing 933/1000 atomic regions from SNP 279684 to 280284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,171 DEBUG Processing 886/1109 atomic regions from SNP 265674 to 266274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,308 DEBUG Processing 35/66 atomic regions from SNP 10239 to 10840 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:59,341 DEBUG Processing 48/831 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,390 DEBUG Processing 934/1000 atomic regions from SNP 279984 to 280584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,447 DEBUG Processing 887/1109 atomic regions from SNP 265974 to 266574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,560 DEBUG Processing 36/66 atomic regions from SNP 10540 to 11141 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:59,583 DEBUG Processing 49/831 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,658 DEBUG Processing 935/1000 atomic regions from SNP 280284 to 280884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,714 DEBUG Processing 888/1109 atomic regions from SNP 266274 to 266874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,789 DEBUG Processing 37/66 atomic regions from SNP 10841 to 11442 for chr7 (subchromosome 1 of 3). 2025-01-31 09:44:59,824 DEBUG Processing 50/831 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:44:59,934 DEBUG Processing 936/1000 atomic regions from SNP 280584 to 281184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,981 DEBUG Processing 889/1109 atomic regions from SNP 266574 to 267174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,015 DEBUG Processing 38/66 atomic regions from SNP 11142 to 11743 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:00,062 DEBUG Processing 51/831 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,209 DEBUG Processing 937/1000 atomic regions from SNP 280884 to 281484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,238 DEBUG Processing 39/66 atomic regions from SNP 11443 to 12044 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:00,254 DEBUG Processing 890/1109 atomic regions from SNP 266874 to 267474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,293 DEBUG Processing 52/831 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,464 DEBUG Processing 40/66 atomic regions from SNP 11744 to 12345 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:00,505 DEBUG Processing 938/1000 atomic regions from SNP 281184 to 281784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,525 DEBUG Processing 53/831 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,529 DEBUG Processing 891/1109 atomic regions from SNP 267174 to 267774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,692 DEBUG Processing 41/66 atomic regions from SNP 12045 to 12646 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:00,767 DEBUG Processing 54/831 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:00,796 DEBUG Processing 939/1000 atomic regions from SNP 281484 to 282084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,810 DEBUG Processing 892/1109 atomic regions from SNP 267474 to 268074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,867 DEBUG chr10 total SNP count: 218663 2025-01-31 09:45:00,867 DEBUG chr10 length: 130694993 2025-01-31 09:45:00,867 DEBUG ----------------------------------------- 2025-01-31 09:45:00,867 INFO Processing SNPs in chr10 2025-01-31 09:45:00,916 DEBUG Processing 42/66 atomic regions from SNP 12346 to 12947 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:01,005 DEBUG Processing 55/831 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,065 DEBUG Processing 940/1000 atomic regions from SNP 281784 to 282384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,084 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 218663)] 2025-01-31 09:45:01,089 DEBUG Processing 893/1109 atomic regions from SNP 267774 to 268374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,137 DEBUG Processing 43/66 atomic regions from SNP 12647 to 13248 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:01,234 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:01,238 DEBUG Processing 56/831 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,334 DEBUG Processing 941/1000 atomic regions from SNP 282084 to 282684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,366 DEBUG Processing 44/66 atomic regions from SNP 12948 to 13549 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:01,369 DEBUG Processing 894/1109 atomic regions from SNP 268074 to 268674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,472 DEBUG Processing 57/831 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,599 DEBUG Processing 45/66 atomic regions from SNP 13249 to 13850 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:01,600 DEBUG Processing 942/1000 atomic regions from SNP 282384 to 282984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,651 DEBUG Processing 895/1109 atomic regions from SNP 268374 to 268974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,713 DEBUG Processing 58/831 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:01,840 DEBUG Processing 46/66 atomic regions from SNP 13550 to 14151 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:01,864 DEBUG Processing 943/1000 atomic regions from SNP 282684 to 283284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,928 DEBUG Processing 896/1109 atomic regions from SNP 268674 to 269274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,957 DEBUG Processing 59/831 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,095 DEBUG Processing 47/66 atomic regions from SNP 13851 to 14452 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:02,127 DEBUG Processing 944/1000 atomic regions from SNP 282984 to 283584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,196 DEBUG Processing 60/831 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,202 DEBUG Processing 897/1109 atomic regions from SNP 268974 to 269574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,340 DEBUG Processing 48/66 atomic regions from SNP 14152 to 14753 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:02,411 DEBUG Processing 945/1000 atomic regions from SNP 283284 to 283884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,430 DEBUG Processing 61/831 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,476 DEBUG Processing 898/1109 atomic regions from SNP 269274 to 269874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,600 DEBUG Processing 49/66 atomic regions from SNP 14453 to 15054 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:02,664 DEBUG Processing 62/831 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,687 DEBUG Processing 946/1000 atomic regions from SNP 283584 to 284184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,780 DEBUG Processing 899/1109 atomic regions from SNP 269574 to 270174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,840 DEBUG Processing 50/66 atomic regions from SNP 14754 to 15355 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:02,897 DEBUG Processing 63/831 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:02,949 DEBUG Processing 947/1000 atomic regions from SNP 283884 to 284484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,052 DEBUG Processing 900/1109 atomic regions from SNP 269874 to 270474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,068 DEBUG Processing 51/66 atomic regions from SNP 15055 to 15656 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:03,136 DEBUG Processing 64/831 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,212 DEBUG Processing 948/1000 atomic regions from SNP 284184 to 284784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,312 DEBUG Processing 52/66 atomic regions from SNP 15356 to 15957 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:03,333 DEBUG Processing 901/1109 atomic regions from SNP 270174 to 270774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,375 DEBUG Processing 65/831 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,475 DEBUG Processing 949/1000 atomic regions from SNP 284484 to 285084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,556 DEBUG Processing 53/66 atomic regions from SNP 15657 to 16258 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:03,617 DEBUG Processing 66/831 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,618 DEBUG Processing 902/1109 atomic regions from SNP 270474 to 271074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,739 DEBUG Processing 950/1000 atomic regions from SNP 284784 to 285384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,785 DEBUG Processing 54/66 atomic regions from SNP 15958 to 16559 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:03,860 DEBUG Processing 67/831 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:03,906 DEBUG Processing 903/1109 atomic regions from SNP 270774 to 271374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,006 DEBUG Processing 951/1000 atomic regions from SNP 285084 to 285684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,010 DEBUG Processing 55/66 atomic regions from SNP 16259 to 16860 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:04,088 DEBUG Processing 68/831 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,205 DEBUG Processing 904/1109 atomic regions from SNP 271074 to 271674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,242 DEBUG Processing 56/66 atomic regions from SNP 16560 to 17161 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:04,298 DEBUG Processing 952/1000 atomic regions from SNP 285384 to 285984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,300 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:45:04,302 DEBUG chr8: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.019 2025-01-31 09:45:04,316 DEBUG Processing 69/831 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,481 DEBUG Processing 57/66 atomic regions from SNP 16861 to 17462 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:04,505 DEBUG Processing 905/1109 atomic regions from SNP 271374 to 271974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,553 DEBUG Processing 70/831 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,588 DEBUG Processing 953/1000 atomic regions from SNP 285684 to 286284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,719 DEBUG Processing 58/66 atomic regions from SNP 17162 to 17763 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:04,794 DEBUG Processing 71/831 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:04,806 DEBUG Processing 906/1109 atomic regions from SNP 271674 to 272274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,868 DEBUG Processing 954/1000 atomic regions from SNP 285984 to 286584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,953 DEBUG Processing 59/66 atomic regions from SNP 17463 to 18064 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:05,035 DEBUG Processing 72/831 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,093 DEBUG Processing 907/1109 atomic regions from SNP 271974 to 272574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,156 DEBUG Processing 955/1000 atomic regions from SNP 286284 to 286884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,176 DEBUG Processing 60/66 atomic regions from SNP 17764 to 18365 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:05,261 DEBUG Processing 73/831 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,370 DEBUG Processing 908/1109 atomic regions from SNP 272274 to 272874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,422 DEBUG Processing 61/66 atomic regions from SNP 18065 to 18666 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:05,455 DEBUG Processing 956/1000 atomic regions from SNP 286584 to 287184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,489 DEBUG Processing 74/831 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,658 DEBUG Processing 909/1109 atomic regions from SNP 272574 to 273174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,691 DEBUG Processing 62/66 atomic regions from SNP 18366 to 18967 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:05,721 DEBUG Processing 75/831 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,740 DEBUG Processing 957/1000 atomic regions from SNP 286884 to 287484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,948 DEBUG Processing 910/1109 atomic regions from SNP 272874 to 273474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,957 DEBUG Processing 76/831 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:05,965 DEBUG Processing 63/66 atomic regions from SNP 18667 to 19268 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:06,026 DEBUG Processing 958/1000 atomic regions from SNP 287184 to 287784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,193 DEBUG Processing 77/831 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,229 DEBUG Processing 64/66 atomic regions from SNP 18968 to 19569 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:06,231 DEBUG Processing 911/1109 atomic regions from SNP 273174 to 273774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,300 DEBUG Processing 959/1000 atomic regions from SNP 287484 to 288084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,437 DEBUG Processing 78/831 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,491 DEBUG Processing 65/66 atomic regions from SNP 19269 to 19870 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:06,518 DEBUG Processing 912/1109 atomic regions from SNP 273474 to 274074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,558 DEBUG Processing 960/1000 atomic regions from SNP 287784 to 288384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,616 DEBUG chr8 total SNP count: 214414 2025-01-31 09:45:06,616 DEBUG chr8 length: 129401213 2025-01-31 09:45:06,616 DEBUG ----------------------------------------- 2025-01-31 09:45:06,616 INFO Processing SNPs in chr8 2025-01-31 09:45:06,685 DEBUG Processing 79/831 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,753 DEBUG Processing 66/66 atomic regions from SNP 19570 to 20171 for chr7 (subchromosome 1 of 3). 2025-01-31 09:45:06,809 DEBUG Processing 913/1109 atomic regions from SNP 273774 to 274374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,815 DEBUG Processing 961/1000 atomic regions from SNP 288084 to 288684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,834 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 214414)] 2025-01-31 09:45:06,891 DEBUG Unique SNPs positions in subchromosome 1: 20172 2025-01-31 09:45:06,926 DEBUG Processing 80/831 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:06,949 DEBUG Subchromosome time: 18.326967637985945, subchromosome SNPs: 20172 2025-01-31 09:45:06,982 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:07,000 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:07,076 DEBUG Processing 962/1000 atomic regions from SNP 288384 to 288984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,092 DEBUG Processing 914/1109 atomic regions from SNP 274074 to 274674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,170 DEBUG Processing 81/831 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,341 DEBUG Processing 963/1000 atomic regions from SNP 288684 to 289284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,364 DEBUG Processing 915/1109 atomic regions from SNP 274374 to 274974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,403 DEBUG Processing 82/831 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,623 DEBUG Processing 964/1000 atomic regions from SNP 288984 to 289584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,641 DEBUG Processing 916/1109 atomic regions from SNP 274674 to 275274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,648 DEBUG Processing 83/831 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,893 DEBUG Processing 84/831 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:07,902 DEBUG Processing 965/1000 atomic regions from SNP 289284 to 289884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,921 DEBUG Processing 917/1109 atomic regions from SNP 274974 to 275574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,139 DEBUG Processing 85/831 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,174 DEBUG Processing 966/1000 atomic regions from SNP 289584 to 290184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,200 DEBUG Processing 918/1109 atomic regions from SNP 275274 to 275874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,388 DEBUG Processing 86/831 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,443 DEBUG Processing 967/1000 atomic regions from SNP 289884 to 290484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,475 DEBUG Processing 919/1109 atomic regions from SNP 275574 to 276174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,637 DEBUG Processing 87/831 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,715 DEBUG Processing 968/1000 atomic regions from SNP 290184 to 290784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,749 DEBUG Processing 920/1109 atomic regions from SNP 275874 to 276474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,881 DEBUG Processing 88/831 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:08,985 DEBUG Processing 969/1000 atomic regions from SNP 290484 to 291084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,023 DEBUG Processing 921/1109 atomic regions from SNP 276174 to 276774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,123 DEBUG Processing 89/831 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,249 DEBUG Processing 970/1000 atomic regions from SNP 290784 to 291384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,296 DEBUG Processing 922/1109 atomic regions from SNP 276474 to 277074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,367 DEBUG Processing 90/831 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,512 DEBUG Processing 971/1000 atomic regions from SNP 291084 to 291684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,563 DEBUG Processing 923/1109 atomic regions from SNP 276774 to 277374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,615 DEBUG Processing 91/831 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:09,792 DEBUG Processing 972/1000 atomic regions from SNP 291384 to 291984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,831 DEBUG Processing 924/1109 atomic regions from SNP 277074 to 277674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,864 DEBUG Processing 92/831 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,060 DEBUG Processing 973/1000 atomic regions from SNP 291684 to 292284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,104 DEBUG Processing 925/1109 atomic regions from SNP 277374 to 277974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,107 DEBUG Processing 93/831 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,328 DEBUG Processing 974/1000 atomic regions from SNP 291984 to 292584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,350 DEBUG Processing 94/831 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,378 DEBUG Processing 926/1109 atomic regions from SNP 277674 to 278274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,595 DEBUG Processing 95/831 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,601 DEBUG Processing 975/1000 atomic regions from SNP 292284 to 292884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,644 DEBUG Processing 927/1109 atomic regions from SNP 277974 to 278574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,847 DEBUG Processing 96/831 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:10,882 DEBUG Processing 976/1000 atomic regions from SNP 292584 to 293184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,918 DEBUG Processing 928/1109 atomic regions from SNP 278274 to 278874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,099 DEBUG Processing 97/831 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,166 DEBUG Processing 977/1000 atomic regions from SNP 292884 to 293484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,204 DEBUG Processing 929/1109 atomic regions from SNP 278574 to 279174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,347 DEBUG Processing 98/831 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,450 DEBUG Processing 978/1000 atomic regions from SNP 293184 to 293784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,497 DEBUG Processing 930/1109 atomic regions from SNP 278874 to 279474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,583 DEBUG Processing 99/831 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,721 DEBUG Processing 979/1000 atomic regions from SNP 293484 to 294084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,799 DEBUG Processing 931/1109 atomic regions from SNP 279174 to 279774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,815 DEBUG Processing 100/831 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:11,994 DEBUG Processing 980/1000 atomic regions from SNP 293784 to 294384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,058 DEBUG Processing 101/831 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,113 DEBUG Processing 932/1109 atomic regions from SNP 279474 to 280074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,265 DEBUG Processing 981/1000 atomic regions from SNP 294084 to 294684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,309 DEBUG Processing 102/831 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,414 DEBUG Processing 933/1109 atomic regions from SNP 279774 to 280374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,529 DEBUG Processing 982/1000 atomic regions from SNP 294384 to 294984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,555 DEBUG Processing 103/831 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,713 DEBUG Processing 934/1109 atomic regions from SNP 280074 to 280674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,792 DEBUG Processing 983/1000 atomic regions from SNP 294684 to 295284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,801 DEBUG Processing 104/831 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:12,977 DEBUG Processing 935/1109 atomic regions from SNP 280374 to 280974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,037 DEBUG Processing 105/831 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,056 DEBUG Processing 984/1000 atomic regions from SNP 294984 to 295584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,243 DEBUG Processing 936/1109 atomic regions from SNP 280674 to 281274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,275 DEBUG Processing 106/831 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,338 DEBUG Processing 985/1000 atomic regions from SNP 295284 to 295884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,512 DEBUG Processing 107/831 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,514 DEBUG Processing 937/1109 atomic regions from SNP 280974 to 281574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,625 DEBUG Processing 986/1000 atomic regions from SNP 295584 to 296184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,751 DEBUG Processing 108/831 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:13,779 DEBUG Processing 938/1109 atomic regions from SNP 281274 to 281874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,885 DEBUG Processing 987/1000 atomic regions from SNP 295884 to 296484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,988 DEBUG Processing 109/831 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,044 DEBUG Processing 939/1109 atomic regions from SNP 281574 to 282174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,148 DEBUG Processing 988/1000 atomic regions from SNP 296184 to 296784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,224 DEBUG Processing 110/831 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,311 DEBUG Processing 940/1109 atomic regions from SNP 281874 to 282474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,437 DEBUG Processing 989/1000 atomic regions from SNP 296484 to 297084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,459 DEBUG Processing 111/831 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,597 DEBUG Processing 941/1109 atomic regions from SNP 282174 to 282774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,694 DEBUG Processing 112/831 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,722 DEBUG Processing 990/1000 atomic regions from SNP 296784 to 297384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,884 DEBUG Processing 942/1109 atomic regions from SNP 282474 to 283074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,929 DEBUG Processing 113/831 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:14,988 DEBUG Processing 991/1000 atomic regions from SNP 297084 to 297684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,143 DEBUG Processing 943/1109 atomic regions from SNP 282774 to 283374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,165 DEBUG Processing 114/831 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,259 DEBUG Processing 992/1000 atomic regions from SNP 297384 to 297984 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,395 DEBUG Processing 115/831 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,408 DEBUG Processing 944/1109 atomic regions from SNP 283074 to 283674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,526 DEBUG Processing 993/1000 atomic regions from SNP 297684 to 298284 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,628 DEBUG Processing 116/831 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,676 DEBUG Processing 945/1109 atomic regions from SNP 283374 to 283974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,796 DEBUG Processing 994/1000 atomic regions from SNP 297984 to 298584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,861 DEBUG Processing 117/831 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:15,937 DEBUG Processing 946/1109 atomic regions from SNP 283674 to 284274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,065 DEBUG Processing 995/1000 atomic regions from SNP 298284 to 298884 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,099 DEBUG Processing 118/831 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,200 DEBUG Processing 947/1109 atomic regions from SNP 283974 to 284574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,330 DEBUG Processing 996/1000 atomic regions from SNP 298584 to 299184 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,338 DEBUG Processing 119/831 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,479 DEBUG Processing 948/1109 atomic regions from SNP 284274 to 284874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,578 DEBUG Processing 120/831 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,602 DEBUG Processing 997/1000 atomic regions from SNP 298884 to 299484 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,743 DEBUG Processing 949/1109 atomic regions from SNP 284574 to 285174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,819 DEBUG Processing 121/831 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:16,894 DEBUG Processing 998/1000 atomic regions from SNP 299184 to 299784 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,006 DEBUG Processing 950/1109 atomic regions from SNP 284874 to 285474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,063 DEBUG Processing 122/831 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,162 DEBUG Processing 999/1000 atomic regions from SNP 299484 to 300084 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,266 DEBUG Processing 951/1109 atomic regions from SNP 285174 to 285774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,302 DEBUG Processing 123/831 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,431 DEBUG Processing 1000/1000 atomic regions from SNP 299784 to 300384 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,527 DEBUG Processing 952/1109 atomic regions from SNP 285474 to 286074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,534 DEBUG Processing 124/831 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,570 DEBUG Unique SNPs positions in subchromosome 1: 300385 2025-01-31 09:45:17,768 DEBUG Processing 125/831 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:17,806 DEBUG Processing 953/1109 atomic regions from SNP 285774 to 286374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,999 DEBUG Processing 126/831 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,082 DEBUG Processing 954/1109 atomic regions from SNP 286074 to 286674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,233 DEBUG Processing 127/831 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,357 DEBUG Processing 955/1109 atomic regions from SNP 286374 to 286974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,464 DEBUG Processing 128/831 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,624 DEBUG Processing 956/1109 atomic regions from SNP 286674 to 287274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,695 DEBUG Processing 129/831 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:18,887 DEBUG Processing 957/1109 atomic regions from SNP 286974 to 287574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,932 DEBUG Processing 130/831 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,154 DEBUG Processing 958/1109 atomic regions from SNP 287274 to 287874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,164 DEBUG Processing 131/831 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,398 DEBUG Processing 132/831 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,416 DEBUG Processing 959/1109 atomic regions from SNP 287574 to 288174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,627 DEBUG Processing 133/831 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,674 DEBUG Processing 960/1109 atomic regions from SNP 287874 to 288474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,862 DEBUG Processing 134/831 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:19,939 DEBUG Processing 961/1109 atomic regions from SNP 288174 to 288774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,101 DEBUG Processing 135/831 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,208 DEBUG Processing 962/1109 atomic regions from SNP 288474 to 289074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,335 DEBUG Processing 136/831 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,480 DEBUG Processing 963/1109 atomic regions from SNP 288774 to 289374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,565 DEBUG Processing 137/831 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:20,774 DEBUG Processing 964/1109 atomic regions from SNP 289074 to 289674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,804 DEBUG Processing 138/831 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,052 DEBUG Processing 139/831 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,078 DEBUG Processing 965/1109 atomic regions from SNP 289374 to 289974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,303 DEBUG Processing 140/831 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,375 DEBUG Processing 966/1109 atomic regions from SNP 289674 to 290274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,541 DEBUG Processing 141/831 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,659 DEBUG Processing 967/1109 atomic regions from SNP 289974 to 290574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,774 DEBUG Processing 142/831 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:21,928 DEBUG Processing 968/1109 atomic regions from SNP 290274 to 290874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,005 DEBUG Processing 143/831 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,198 DEBUG Processing 969/1109 atomic regions from SNP 290574 to 291174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,255 DEBUG Processing 144/831 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,460 DEBUG Processing 970/1109 atomic regions from SNP 290874 to 291474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,509 DEBUG Processing 145/831 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:22,737 DEBUG Processing 971/1109 atomic regions from SNP 291174 to 291774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,771 DEBUG Processing 146/831 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,022 DEBUG Processing 147/831 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,026 DEBUG Processing 972/1109 atomic regions from SNP 291474 to 292074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,268 DEBUG Processing 148/831 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,284 DEBUG Processing 973/1109 atomic regions from SNP 291774 to 292374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,497 DEBUG Processing 149/831 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,542 DEBUG Processing 974/1109 atomic regions from SNP 292074 to 292674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,734 DEBUG Processing 150/831 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:23,801 DEBUG Processing 975/1109 atomic regions from SNP 292374 to 292974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,991 DEBUG Processing 151/831 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,064 DEBUG Processing 976/1109 atomic regions from SNP 292674 to 293274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,233 DEBUG Processing 152/831 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,324 DEBUG Processing 977/1109 atomic regions from SNP 292974 to 293574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,471 DEBUG Processing 153/831 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,587 DEBUG Processing 978/1109 atomic regions from SNP 293274 to 293874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,709 DEBUG Processing 154/831 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:24,850 DEBUG Processing 979/1109 atomic regions from SNP 293574 to 294174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,950 DEBUG Processing 155/831 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,112 DEBUG Processing 980/1109 atomic regions from SNP 293874 to 294474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,207 DEBUG Processing 156/831 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,377 DEBUG Processing 981/1109 atomic regions from SNP 294174 to 294774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,445 DEBUG Processing 157/831 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,647 DEBUG Processing 982/1109 atomic regions from SNP 294474 to 295074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,677 DEBUG Processing 158/831 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:25,913 DEBUG Processing 983/1109 atomic regions from SNP 294774 to 295374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,924 DEBUG Processing 159/831 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,158 DEBUG Processing 160/831 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,176 DEBUG Processing 984/1109 atomic regions from SNP 295074 to 295674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,402 DEBUG Processing 161/831 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,447 DEBUG Processing 985/1109 atomic regions from SNP 295374 to 295974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,644 DEBUG Processing 162/831 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,713 DEBUG Processing 986/1109 atomic regions from SNP 295674 to 296274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,886 DEBUG Processing 163/831 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:26,976 DEBUG Processing 987/1109 atomic regions from SNP 295974 to 296574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,127 DEBUG Processing 164/831 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,240 DEBUG Processing 988/1109 atomic regions from SNP 296274 to 296874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,367 DEBUG Processing 165/831 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,505 DEBUG Processing 989/1109 atomic regions from SNP 296574 to 297174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,602 DEBUG Processing 166/831 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:27,776 DEBUG Processing 990/1109 atomic regions from SNP 296874 to 297474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,841 DEBUG Processing 167/831 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,044 DEBUG Processing 991/1109 atomic regions from SNP 297174 to 297774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,071 DEBUG Processing 168/831 atomic regions from SNP 50267 to 50868 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,224 DEBUG Segmenting atomic regions: 2025-01-31 09:45:28,300 DEBUG Processing 169/831 atomic regions from SNP 50568 to 51169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,310 DEBUG Processing 992/1109 atomic regions from SNP 297474 to 298074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,319 DEBUG Processing 1/727 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,531 DEBUG Processing 170/831 atomic regions from SNP 50869 to 51470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,538 DEBUG Processing 2/727 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,583 DEBUG Processing 993/1109 atomic regions from SNP 297774 to 298374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,755 DEBUG Processing 3/727 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,760 DEBUG Processing 171/831 atomic regions from SNP 51170 to 51771 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:28,853 DEBUG Processing 994/1109 atomic regions from SNP 298074 to 298674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,972 DEBUG Processing 4/727 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:28,992 DEBUG Processing 172/831 atomic regions from SNP 51471 to 52072 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,117 DEBUG Processing 995/1109 atomic regions from SNP 298374 to 298974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,193 DEBUG Processing 5/727 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,228 DEBUG Processing 173/831 atomic regions from SNP 51772 to 52373 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,387 DEBUG Processing 996/1109 atomic regions from SNP 298674 to 299274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,417 DEBUG Processing 6/727 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,467 DEBUG Processing 174/831 atomic regions from SNP 52073 to 52674 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,630 DEBUG Processing 7/727 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,660 DEBUG Processing 997/1109 atomic regions from SNP 298974 to 299574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,705 DEBUG Processing 175/831 atomic regions from SNP 52374 to 52975 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:29,847 DEBUG Processing 8/727 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:29,926 DEBUG Processing 998/1109 atomic regions from SNP 299274 to 299874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,937 DEBUG Processing 176/831 atomic regions from SNP 52675 to 53276 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,067 DEBUG Processing 9/727 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,163 DEBUG Processing 177/831 atomic regions from SNP 52976 to 53577 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,195 DEBUG Processing 999/1109 atomic regions from SNP 299574 to 300174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,294 DEBUG Processing 10/727 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,392 DEBUG Processing 178/831 atomic regions from SNP 53277 to 53878 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,462 DEBUG Processing 1000/1109 atomic regions from SNP 299874 to 300474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,520 DEBUG Processing 11/727 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,645 DEBUG Processing 179/831 atomic regions from SNP 53578 to 54179 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,730 DEBUG Processing 1001/1109 atomic regions from SNP 300174 to 300774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,744 DEBUG Processing 12/727 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:30,881 DEBUG Processing 180/831 atomic regions from SNP 53879 to 54480 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:30,953 DEBUG Processing 13/727 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,000 DEBUG Processing 1002/1109 atomic regions from SNP 300474 to 301074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,134 DEBUG Processing 181/831 atomic regions from SNP 54180 to 54781 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,168 DEBUG Processing 14/727 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,263 DEBUG Processing 1003/1109 atomic regions from SNP 300774 to 301374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,377 DEBUG Processing 182/831 atomic regions from SNP 54481 to 55082 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,390 DEBUG Processing 15/727 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,527 DEBUG Processing 1004/1109 atomic regions from SNP 301074 to 301674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,578 DEBUG Subchromosome time: 320.0374451020034, subchromosome SNPs: 300385 2025-01-31 09:45:31,580 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:31,621 DEBUG Processing 183/831 atomic regions from SNP 54782 to 55383 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,625 DEBUG Processing 16/727 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:31,795 DEBUG Processing 1005/1109 atomic regions from SNP 301374 to 301974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,864 DEBUG Processing 184/831 atomic regions from SNP 55083 to 55684 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:31,870 DEBUG Processing 17/727 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,094 DEBUG Processing 1006/1109 atomic regions from SNP 301674 to 302274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,096 DEBUG Processing 18/727 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,105 DEBUG Processing 185/831 atomic regions from SNP 55384 to 55985 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,320 DEBUG Processing 19/727 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,341 DEBUG Segmenting atomic regions: 2025-01-31 09:45:32,348 DEBUG Processing 186/831 atomic regions from SNP 55685 to 56286 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,392 DEBUG Processing 1007/1109 atomic regions from SNP 301974 to 302574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,444 DEBUG Processing 1/687 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:32,537 DEBUG Segmenting atomic regions: 2025-01-31 09:45:32,547 DEBUG Processing 20/727 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,590 DEBUG Processing 187/831 atomic regions from SNP 55986 to 56587 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,660 DEBUG Processing 2/687 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:32,668 DEBUG Processing 1008/1109 atomic regions from SNP 302274 to 302874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,671 DEBUG Processing 1/25 atomic regions from SNP 0 to 601 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:32,763 DEBUG Processing 21/727 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:32,835 DEBUG Processing 188/831 atomic regions from SNP 56287 to 56888 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:32,880 DEBUG Processing 3/687 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:32,928 DEBUG Processing 2/25 atomic regions from SNP 301 to 902 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:32,943 DEBUG Processing 1009/1109 atomic regions from SNP 302574 to 303174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,976 DEBUG Processing 22/727 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,075 DEBUG Processing 189/831 atomic regions from SNP 56588 to 57189 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,100 DEBUG Processing 4/687 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:33,185 DEBUG Processing 3/25 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:33,188 DEBUG Processing 23/727 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,215 DEBUG Processing 1010/1109 atomic regions from SNP 302874 to 303474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,278 DEBUG Segmenting atomic regions: 2025-01-31 09:45:33,311 DEBUG Processing 190/831 atomic regions from SNP 56889 to 57490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,319 DEBUG Processing 5/687 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:33,374 DEBUG Processing 1/713 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,413 DEBUG Processing 24/727 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,448 DEBUG Processing 4/25 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:33,486 DEBUG Processing 1011/1109 atomic regions from SNP 303174 to 303774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,542 DEBUG Processing 191/831 atomic regions from SNP 57190 to 57791 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,552 DEBUG Processing 6/687 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:33,586 DEBUG Processing 2/713 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,635 DEBUG Processing 25/727 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,713 DEBUG Processing 5/25 atomic regions from SNP 1204 to 1804 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:33,765 DEBUG Processing 1012/1109 atomic regions from SNP 303474 to 304074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,780 DEBUG Processing 192/831 atomic regions from SNP 57491 to 58092 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:33,788 DEBUG Processing 7/687 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:33,794 DEBUG Processing 3/713 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:33,878 DEBUG Processing 26/727 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:33,975 DEBUG Processing 6/25 atomic regions from SNP 1504 to 2104 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:34,017 DEBUG Processing 8/687 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:34,019 DEBUG Processing 193/831 atomic regions from SNP 57792 to 58393 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,020 DEBUG Processing 4/713 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,052 DEBUG Processing 1013/1109 atomic regions from SNP 303774 to 304374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,097 DEBUG Processing 27/727 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,238 DEBUG Processing 7/25 atomic regions from SNP 1804 to 2404 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:34,246 DEBUG Processing 5/713 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,270 DEBUG Processing 194/831 atomic regions from SNP 58093 to 58694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,271 DEBUG Processing 9/687 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:34,311 DEBUG Processing 28/727 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,347 DEBUG Processing 1014/1109 atomic regions from SNP 304074 to 304674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,463 DEBUG Processing 6/713 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,506 DEBUG Processing 8/25 atomic regions from SNP 2104 to 2704 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:34,515 DEBUG Processing 10/687 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:34,521 DEBUG Processing 195/831 atomic regions from SNP 58394 to 58995 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,541 DEBUG Processing 29/727 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,656 DEBUG Processing 1015/1109 atomic regions from SNP 304374 to 304974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,688 DEBUG Processing 7/713 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,756 DEBUG Processing 11/687 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:34,769 DEBUG Processing 196/831 atomic regions from SNP 58695 to 59296 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:34,772 DEBUG Processing 30/727 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:34,773 DEBUG Processing 9/25 atomic regions from SNP 2404 to 3004 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:34,916 DEBUG Processing 8/713 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:34,961 DEBUG Processing 1016/1109 atomic regions from SNP 304674 to 305274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,004 DEBUG Processing 31/727 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,005 DEBUG Processing 12/687 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:35,016 DEBUG Processing 197/831 atomic regions from SNP 58996 to 59597 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,044 DEBUG Processing 10/25 atomic regions from SNP 2704 to 3304 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:35,130 DEBUG Processing 9/713 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,224 DEBUG Processing 13/687 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:35,228 DEBUG Processing 32/727 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,232 DEBUG Processing 1017/1109 atomic regions from SNP 304974 to 305574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,263 DEBUG Processing 198/831 atomic regions from SNP 59297 to 59898 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,306 DEBUG Processing 11/25 atomic regions from SNP 3004 to 3604 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:35,343 DEBUG Processing 10/713 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,450 DEBUG Processing 33/727 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,467 DEBUG Processing 14/687 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:35,518 DEBUG Processing 199/831 atomic regions from SNP 59598 to 60199 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,520 DEBUG Processing 1018/1109 atomic regions from SNP 305274 to 305874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,557 DEBUG Processing 11/713 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,581 DEBUG Processing 12/25 atomic regions from SNP 3304 to 3904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:35,667 DEBUG Processing 34/727 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,691 DEBUG Processing 15/687 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:35,779 DEBUG Processing 12/713 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:35,789 DEBUG Processing 200/831 atomic regions from SNP 59899 to 60500 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:35,834 DEBUG Processing 1019/1109 atomic regions from SNP 305574 to 306174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,838 DEBUG Processing 13/25 atomic regions from SNP 3604 to 4204 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:35,883 DEBUG Processing 35/727 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:35,905 DEBUG Processing 16/687 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:35,999 DEBUG Processing 13/713 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,050 DEBUG Processing 201/831 atomic regions from SNP 60200 to 60801 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,096 DEBUG Processing 36/727 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,117 DEBUG Processing 14/25 atomic regions from SNP 3904 to 4504 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:36,118 DEBUG Processing 17/687 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:36,130 DEBUG Processing 1020/1109 atomic regions from SNP 305874 to 306474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,213 DEBUG Processing 14/713 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,298 DEBUG Processing 202/831 atomic regions from SNP 60501 to 61102 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,315 DEBUG Processing 37/727 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,339 DEBUG Processing 18/687 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:36,409 DEBUG Processing 15/25 atomic regions from SNP 4204 to 4804 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:36,421 DEBUG Processing 15/713 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,429 DEBUG Processing 1021/1109 atomic regions from SNP 306174 to 306774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,537 DEBUG Processing 38/727 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,561 DEBUG Processing 203/831 atomic regions from SNP 60802 to 61403 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,562 DEBUG Processing 19/687 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:36,632 DEBUG Processing 16/713 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,702 DEBUG Processing 16/25 atomic regions from SNP 4504 to 5104 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:36,740 DEBUG Processing 1022/1109 atomic regions from SNP 306474 to 307074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,759 DEBUG Processing 39/727 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:36,783 DEBUG Processing 20/687 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:36,802 DEBUG Processing 204/831 atomic regions from SNP 61103 to 61704 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:36,842 DEBUG Processing 17/713 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:36,978 DEBUG Processing 17/25 atomic regions from SNP 4804 to 5404 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:36,987 DEBUG Processing 40/727 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,022 DEBUG Processing 21/687 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:37,046 DEBUG Processing 205/831 atomic regions from SNP 61404 to 62005 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,051 DEBUG Processing 1023/1109 atomic regions from SNP 306774 to 307374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,057 DEBUG Processing 18/713 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,217 DEBUG Processing 41/727 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,264 DEBUG Processing 18/25 atomic regions from SNP 5104 to 5704 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:37,272 DEBUG Processing 22/687 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:37,277 DEBUG Processing 19/713 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,301 DEBUG Processing 206/831 atomic regions from SNP 61705 to 62306 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,370 DEBUG Processing 1024/1109 atomic regions from SNP 307074 to 307674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,444 DEBUG Processing 42/727 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,499 DEBUG Processing 20/713 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,527 DEBUG Processing 23/687 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:37,551 DEBUG Processing 207/831 atomic regions from SNP 62006 to 62607 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,556 DEBUG Processing 19/25 atomic regions from SNP 5404 to 6004 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:37,666 DEBUG Processing 43/727 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,679 DEBUG Processing 1025/1109 atomic regions from SNP 307374 to 307974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,721 DEBUG Processing 21/713 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,782 DEBUG Processing 24/687 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:37,801 DEBUG Processing 208/831 atomic regions from SNP 62307 to 62908 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:37,836 DEBUG Processing 20/25 atomic regions from SNP 5704 to 6304 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:37,891 DEBUG Processing 44/727 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:37,954 DEBUG Processing 22/713 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:37,988 DEBUG Processing 1026/1109 atomic regions from SNP 307674 to 308274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,014 DEBUG Processing 25/687 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:38,055 DEBUG Processing 209/831 atomic regions from SNP 62608 to 63209 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,113 DEBUG Processing 45/727 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,119 DEBUG Processing 21/25 atomic regions from SNP 6004 to 6604 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:38,176 DEBUG Processing 23/713 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,245 DEBUG Processing 26/687 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:38,278 DEBUG Processing 1027/1109 atomic regions from SNP 307974 to 308574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,305 DEBUG Processing 210/831 atomic regions from SNP 62909 to 63510 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,336 DEBUG Processing 46/727 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,393 DEBUG Processing 24/713 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,405 DEBUG Processing 22/25 atomic regions from SNP 6304 to 6904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:38,488 DEBUG Processing 27/687 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:38,563 DEBUG Processing 211/831 atomic regions from SNP 63210 to 63811 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,566 DEBUG Processing 47/727 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,566 DEBUG Processing 1028/1109 atomic regions from SNP 308274 to 308874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,608 DEBUG Processing 25/713 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,691 DEBUG Processing 23/25 atomic regions from SNP 6604 to 7204 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:38,736 DEBUG Processing 28/687 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:38,802 DEBUG Processing 48/727 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:38,818 DEBUG Processing 212/831 atomic regions from SNP 63511 to 64112 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:38,834 DEBUG Processing 26/713 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:38,857 DEBUG Processing 1029/1109 atomic regions from SNP 308574 to 309174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,977 DEBUG Processing 29/687 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:38,983 DEBUG Processing 24/25 atomic regions from SNP 6904 to 7504 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:39,033 DEBUG Processing 49/727 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,055 DEBUG Processing 27/713 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,069 DEBUG Processing 213/831 atomic regions from SNP 63812 to 64413 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,146 DEBUG Processing 1030/1109 atomic regions from SNP 308874 to 309474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,199 DEBUG Processing 30/687 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:39,255 DEBUG Processing 50/727 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,267 DEBUG Processing 28/713 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,269 DEBUG Processing 25/25 atomic regions from SNP 7204 to 7804 for chr2 (subchromosome 2 of 2). 2025-01-31 09:45:39,317 DEBUG Processing 214/831 atomic regions from SNP 64113 to 64714 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,403 DEBUG Unique SNPs positions in subchromosome 2: 7805 2025-01-31 09:45:39,413 DEBUG Subchromosome time: 7.832662745960988, subchromosome SNPs: 7805 2025-01-31 09:45:39,414 DEBUG Estimated BADs: [1.09, 0.54, 1.09, 3.27, 2.18, 1.09, 0.18, 0.54, 1.09, 0.54, 3.27, 0.14, 1.09, 2.18, 0.14, 1.09, 0.54, 2.18, 1.09, 0.54, 2.18, 1.09, 3.27, 1.09, 1.09, 4.36] SNP counts: [8183, 17547, 11705, 14972, 6563, 5795, 4986, 42032, 24569, 5754, 1472, 5698, 2127, 7475, 8399, 13188, 18137, 5220, 29457, 22488, 14123, 11246, 6146, 13103, 3697, 4108] SNP IDs counts: [8183, 17547, 11705, 14972, 6563, 5795, 4986, 42032, 24569, 5754, 1472, 5698, 2127, 7475, 8399, 13188, 18137, 5220, 29457, 22488, 14123, 11246, 6146, 13103, 3697, 4108] Critical gap: 734444bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.62Mbp, 18.02Mbp, 24.92Mbp, 32.85Mbp, 36.30Mbp, 39.70Mbp, 42.92Mbp, 67.65Mbp, 81.05Mbp, 84.65Mbp, 85.47Mbp, 89.35Mbp, 90.85Mbp, 94.82Mbp, 100.41Mbp, 108.07Mbp, 118.65Mbp, 121.41Mbp, 137.84Mbp, 150.75Mbp, 158.57Mbp, 164.73Mbp, 167.98Mbp, 175.18Mbp[1.52Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:45:39,414 DEBUG chr2 time: 7.833191370009445 s 2025-01-31 09:45:39,433 DEBUG Processing 1031/1109 atomic regions from SNP 309174 to 309774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,454 DEBUG Processing 31/687 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:39,479 DEBUG Processing 51/727 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,482 DEBUG Processing 29/713 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,563 DEBUG Processing 215/831 atomic regions from SNP 64414 to 65015 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,600 DEBUG chr2: Fitting background model for 26 segments 2025-01-31 09:45:39,707 DEBUG Processing 52/727 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,708 DEBUG Processing 30/713 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,716 DEBUG Processing 32/687 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:39,722 DEBUG Processing 1032/1109 atomic regions from SNP 309474 to 310074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,807 DEBUG Processing 216/831 atomic regions from SNP 64715 to 65316 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:39,931 DEBUG Processing 31/713 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:39,944 DEBUG Processing 53/727 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:39,964 DEBUG Processing 33/687 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:40,013 DEBUG Processing 1033/1109 atomic regions from SNP 309774 to 310374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,062 DEBUG Processing 217/831 atomic regions from SNP 65016 to 65617 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,135 DEBUG Processing 32/713 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,172 DEBUG Processing 54/727 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,202 DEBUG Processing 34/687 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:40,304 DEBUG Processing 1034/1109 atomic regions from SNP 310074 to 310674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,315 DEBUG Processing 218/831 atomic regions from SNP 65317 to 65918 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,356 DEBUG Processing 33/713 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,404 DEBUG Processing 55/727 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,423 DEBUG Processing 35/687 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:40,567 DEBUG Processing 219/831 atomic regions from SNP 65618 to 66219 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,582 DEBUG Processing 34/713 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,590 DEBUG Processing 1035/1109 atomic regions from SNP 310374 to 310974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,641 DEBUG Processing 56/727 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,651 DEBUG Processing 36/687 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:40,801 DEBUG Processing 35/713 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:40,809 DEBUG Processing 220/831 atomic regions from SNP 65919 to 66520 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:40,873 DEBUG Processing 57/727 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:40,879 DEBUG Processing 1036/1109 atomic regions from SNP 310674 to 311274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,887 DEBUG Processing 37/687 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:41,011 DEBUG Processing 36/713 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,049 DEBUG Processing 221/831 atomic regions from SNP 66220 to 66821 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,097 DEBUG Processing 58/727 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,119 DEBUG Processing 38/687 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:41,183 DEBUG Processing 1037/1109 atomic regions from SNP 310974 to 311574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,230 DEBUG Processing 37/713 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,299 DEBUG Processing 222/831 atomic regions from SNP 66521 to 67122 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,324 DEBUG Processing 59/727 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,349 DEBUG Processing 39/687 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:41,451 DEBUG Processing 38/713 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,487 DEBUG Processing 1038/1109 atomic regions from SNP 311274 to 311874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,553 DEBUG Processing 223/831 atomic regions from SNP 66822 to 67423 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,554 DEBUG Processing 60/727 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,592 DEBUG Processing 40/687 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:41,669 DEBUG Processing 39/713 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:41,772 DEBUG Processing 1039/1109 atomic regions from SNP 311574 to 312174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,793 DEBUG Processing 61/727 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:41,811 DEBUG Processing 224/831 atomic regions from SNP 67123 to 67724 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:41,826 DEBUG Processing 41/687 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:41,886 DEBUG Processing 40/713 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,025 DEBUG Processing 62/727 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,056 DEBUG Processing 1040/1109 atomic regions from SNP 311874 to 312474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,065 DEBUG Processing 225/831 atomic regions from SNP 67424 to 68025 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,078 DEBUG Processing 42/687 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:42,104 DEBUG Processing 41/713 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,263 DEBUG Processing 63/727 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,312 DEBUG Processing 43/687 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:42,322 DEBUG Processing 42/713 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,325 DEBUG Processing 226/831 atomic regions from SNP 67725 to 68326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,340 DEBUG Processing 1041/1109 atomic regions from SNP 312174 to 312774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,492 DEBUG Processing 64/727 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,542 DEBUG Processing 44/687 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:42,543 DEBUG Processing 43/713 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,582 DEBUG Processing 227/831 atomic regions from SNP 68026 to 68627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,629 DEBUG Processing 1042/1109 atomic regions from SNP 312474 to 313074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,716 DEBUG Processing 65/727 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,771 DEBUG Processing 45/687 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:42,777 DEBUG Processing 44/713 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,838 DEBUG Processing 228/831 atomic regions from SNP 68327 to 68928 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:42,913 DEBUG Processing 1043/1109 atomic regions from SNP 312774 to 313374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,939 DEBUG Processing 66/727 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:42,992 DEBUG Processing 45/713 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:42,993 DEBUG Processing 46/687 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:43,099 DEBUG Processing 229/831 atomic regions from SNP 68628 to 69229 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,168 DEBUG Processing 67/727 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,195 DEBUG Processing 1044/1109 atomic regions from SNP 313074 to 313674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,207 DEBUG Processing 46/713 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,217 DEBUG Processing 47/687 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:43,357 DEBUG Processing 230/831 atomic regions from SNP 68929 to 69530 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,407 DEBUG Processing 68/727 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,447 DEBUG Processing 48/687 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:43,457 DEBUG Processing 47/713 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,488 DEBUG Processing 1045/1109 atomic regions from SNP 313374 to 313974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,610 DEBUG Processing 231/831 atomic regions from SNP 69230 to 69831 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,648 DEBUG Processing 69/727 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,681 DEBUG Processing 49/687 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:43,699 DEBUG Processing 48/713 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:43,802 DEBUG Processing 1046/1109 atomic regions from SNP 313674 to 314274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,859 DEBUG Processing 232/831 atomic regions from SNP 69531 to 70132 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:43,876 DEBUG Processing 70/727 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:43,907 DEBUG Processing 50/687 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:43,918 DEBUG Processing 49/713 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,100 DEBUG Processing 1047/1109 atomic regions from SNP 313974 to 314574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,105 DEBUG Processing 71/727 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,108 DEBUG Processing 233/831 atomic regions from SNP 69832 to 70433 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,132 DEBUG Processing 51/687 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:44,135 DEBUG Processing 50/713 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,336 DEBUG Processing 72/727 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,353 DEBUG Processing 51/713 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,360 DEBUG Processing 52/687 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:44,363 DEBUG Processing 234/831 atomic regions from SNP 70133 to 70734 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,383 DEBUG Processing 1048/1109 atomic regions from SNP 314274 to 314874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,566 DEBUG Processing 52/713 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,568 DEBUG Processing 73/727 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,584 DEBUG Processing 53/687 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:44,618 DEBUG Processing 235/831 atomic regions from SNP 70434 to 71035 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,677 DEBUG Processing 1049/1109 atomic regions from SNP 314574 to 315174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,780 DEBUG Processing 53/713 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:44,795 DEBUG Processing 74/727 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:44,814 DEBUG Processing 54/687 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:44,872 DEBUG Processing 236/831 atomic regions from SNP 70735 to 71336 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:44,991 DEBUG Processing 1050/1109 atomic regions from SNP 314874 to 315474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,000 DEBUG Processing 54/713 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,018 DEBUG Processing 75/727 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,041 DEBUG Processing 55/687 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:45,120 DEBUG Processing 237/831 atomic regions from SNP 71036 to 71637 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,224 DEBUG Processing 55/713 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,246 DEBUG Processing 76/727 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,278 DEBUG Processing 56/687 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:45,293 DEBUG Processing 1051/1109 atomic regions from SNP 315174 to 315774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,364 DEBUG Processing 238/831 atomic regions from SNP 71337 to 71938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,436 DEBUG Processing 56/713 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,480 DEBUG Processing 77/727 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,514 DEBUG Processing 57/687 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:45,585 DEBUG Processing 1052/1109 atomic regions from SNP 315474 to 316074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,610 DEBUG Processing 239/831 atomic regions from SNP 71638 to 72239 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,665 DEBUG Processing 57/713 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,708 DEBUG Processing 78/727 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,737 DEBUG Processing 58/687 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:45,861 DEBUG Processing 240/831 atomic regions from SNP 71939 to 72540 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:45,871 DEBUG Processing 1053/1109 atomic regions from SNP 315774 to 316374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,900 DEBUG Processing 58/713 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:45,939 DEBUG Processing 79/727 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:45,963 DEBUG Processing 59/687 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:46,111 DEBUG Processing 241/831 atomic regions from SNP 72240 to 72841 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,124 DEBUG Processing 59/713 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,155 DEBUG Processing 1054/1109 atomic regions from SNP 316074 to 316674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,170 DEBUG Processing 80/727 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,199 DEBUG Processing 60/687 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:46,339 DEBUG Processing 60/713 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,369 DEBUG Processing 242/831 atomic regions from SNP 72541 to 73142 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,406 DEBUG Processing 81/727 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,437 DEBUG Processing 61/687 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:46,445 DEBUG Processing 1055/1109 atomic regions from SNP 316374 to 316974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,565 DEBUG Processing 61/713 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,623 DEBUG Processing 243/831 atomic regions from SNP 72842 to 73443 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,639 DEBUG Processing 82/727 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,667 DEBUG Processing 62/687 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:46,730 DEBUG Processing 1056/1109 atomic regions from SNP 316674 to 317274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,786 DEBUG Processing 62/713 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:46,872 DEBUG Processing 83/727 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:46,877 DEBUG Processing 244/831 atomic regions from SNP 73143 to 73744 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:46,887 DEBUG Processing 63/687 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:47,011 DEBUG Processing 63/713 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,018 DEBUG Processing 1057/1109 atomic regions from SNP 316974 to 317574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,104 DEBUG Processing 84/727 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,107 DEBUG Processing 64/687 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:47,127 DEBUG Processing 245/831 atomic regions from SNP 73444 to 74045 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,232 DEBUG Processing 64/713 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,304 DEBUG Processing 1058/1109 atomic regions from SNP 317274 to 317874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,334 DEBUG Processing 65/687 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:47,341 DEBUG Processing 85/727 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,381 DEBUG Processing 246/831 atomic regions from SNP 73745 to 74346 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,448 DEBUG Processing 65/713 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,559 DEBUG Processing 66/687 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:47,572 DEBUG Processing 86/727 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,583 DEBUG Processing 1059/1109 atomic regions from SNP 317574 to 318174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,636 DEBUG Processing 247/831 atomic regions from SNP 74046 to 74647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,673 DEBUG Processing 66/713 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:47,782 DEBUG Processing 67/687 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:47,796 DEBUG Processing 87/727 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:47,866 DEBUG Processing 1060/1109 atomic regions from SNP 317874 to 318474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,892 DEBUG Processing 248/831 atomic regions from SNP 74347 to 74947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:47,909 DEBUG Processing 67/713 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,009 DEBUG Processing 68/687 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:48,020 DEBUG Processing 88/727 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,143 DEBUG Processing 249/831 atomic regions from SNP 74647 to 75247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,147 DEBUG Processing 1061/1109 atomic regions from SNP 318174 to 318774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,155 DEBUG Processing 68/713 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,246 DEBUG Processing 69/687 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:48,255 DEBUG Processing 89/727 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,358 DEBUG Processing 69/713 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,383 DEBUG Processing 250/831 atomic regions from SNP 74947 to 75547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,411 DEBUG Processing 1062/1109 atomic regions from SNP 318474 to 319074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,482 DEBUG Processing 70/687 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:48,490 DEBUG Processing 90/727 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,569 DEBUG Processing 70/713 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,630 DEBUG Processing 251/831 atomic regions from SNP 75247 to 75847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,676 DEBUG Processing 1063/1109 atomic regions from SNP 318774 to 319374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,711 DEBUG Processing 71/687 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:48,726 DEBUG Processing 91/727 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:48,791 DEBUG Processing 71/713 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:48,911 DEBUG Processing 252/831 atomic regions from SNP 75547 to 76147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:48,934 DEBUG Processing 72/687 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:48,951 DEBUG Processing 1064/1109 atomic regions from SNP 319074 to 319674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,959 DEBUG Processing 92/727 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,018 DEBUG Processing 72/713 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,154 DEBUG Processing 73/687 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:49,176 DEBUG Processing 253/831 atomic regions from SNP 75847 to 76447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,196 DEBUG Processing 93/727 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,231 DEBUG Processing 1065/1109 atomic regions from SNP 319374 to 319974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,236 DEBUG Processing 73/713 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,371 DEBUG Processing 74/687 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:49,428 DEBUG Processing 254/831 atomic regions from SNP 76147 to 76747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,432 DEBUG Processing 94/727 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,453 DEBUG Processing 74/713 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,510 DEBUG Processing 1066/1109 atomic regions from SNP 319674 to 320274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,587 DEBUG Processing 75/687 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:49,662 DEBUG Processing 75/713 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,665 DEBUG Processing 95/727 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,680 DEBUG Processing 255/831 atomic regions from SNP 76447 to 77047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:49,791 DEBUG Processing 1067/1109 atomic regions from SNP 319974 to 320574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,809 DEBUG Processing 76/687 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:49,873 DEBUG Processing 76/713 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:49,897 DEBUG Processing 96/727 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:49,932 DEBUG Processing 256/831 atomic regions from SNP 76747 to 77347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,037 DEBUG Processing 77/687 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:50,077 DEBUG Processing 1068/1109 atomic regions from SNP 320274 to 320874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,088 DEBUG Processing 77/713 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,131 DEBUG Processing 97/727 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,180 DEBUG Processing 257/831 atomic regions from SNP 77047 to 77647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,288 DEBUG Processing 78/687 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:50,308 DEBUG Processing 78/713 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,363 DEBUG Processing 1069/1109 atomic regions from SNP 320574 to 321174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,368 DEBUG Processing 98/727 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,432 DEBUG Processing 258/831 atomic regions from SNP 77347 to 77947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,509 DEBUG Processing 79/687 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:50,527 DEBUG Processing 79/713 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,618 DEBUG Processing 99/727 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,652 DEBUG Processing 1070/1109 atomic regions from SNP 320874 to 321474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,687 DEBUG Processing 259/831 atomic regions from SNP 77647 to 78247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:50,726 DEBUG Processing 80/687 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:50,740 DEBUG Processing 80/713 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,853 DEBUG Processing 100/727 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:50,935 DEBUG Processing 1071/1109 atomic regions from SNP 321174 to 321774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,947 DEBUG Processing 81/687 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:50,958 DEBUG Processing 81/713 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:50,972 DEBUG Processing 260/831 atomic regions from SNP 77947 to 78547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,083 DEBUG Processing 101/727 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,173 DEBUG Processing 82/687 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:51,177 DEBUG Processing 82/713 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,218 DEBUG Processing 1072/1109 atomic regions from SNP 321474 to 322074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,252 DEBUG Processing 261/831 atomic regions from SNP 78247 to 78847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,311 DEBUG Processing 102/727 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,402 DEBUG Processing 83/713 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,404 DEBUG Processing 83/687 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:51,508 DEBUG Processing 1073/1109 atomic regions from SNP 321774 to 322374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,515 DEBUG Processing 262/831 atomic regions from SNP 78547 to 79147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,545 DEBUG Processing 103/727 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,620 DEBUG Processing 84/713 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,629 DEBUG Processing 84/687 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:51,778 DEBUG Processing 263/831 atomic regions from SNP 78847 to 79447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:51,791 DEBUG Processing 104/727 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:51,794 DEBUG Processing 1074/1109 atomic regions from SNP 322074 to 322674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,844 DEBUG Processing 85/713 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:51,860 DEBUG Processing 85/687 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:52,040 DEBUG Processing 264/831 atomic regions from SNP 79147 to 79747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,040 DEBUG Processing 105/727 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,077 DEBUG Processing 86/713 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,084 DEBUG Processing 1075/1109 atomic regions from SNP 322374 to 322974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,098 DEBUG Processing 86/687 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:52,273 DEBUG Processing 106/727 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,289 DEBUG Processing 265/831 atomic regions from SNP 79447 to 80047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,300 DEBUG Processing 87/713 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,334 DEBUG Processing 87/687 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:52,377 DEBUG Processing 1076/1109 atomic regions from SNP 322674 to 323274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,495 DEBUG Processing 107/727 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,520 DEBUG Processing 88/713 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,528 DEBUG Processing 266/831 atomic regions from SNP 79747 to 80347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,557 DEBUG Processing 88/687 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:52,669 DEBUG Processing 1077/1109 atomic regions from SNP 322974 to 323574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,728 DEBUG Processing 108/727 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,732 DEBUG Processing 89/713 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,771 DEBUG Processing 89/687 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:52,771 DEBUG Processing 267/831 atomic regions from SNP 80047 to 80647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:52,959 DEBUG Processing 1078/1109 atomic regions from SNP 323274 to 323874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,960 DEBUG Processing 90/713 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:52,969 DEBUG Processing 109/727 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:52,999 DEBUG Processing 90/687 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:53,025 DEBUG Processing 268/831 atomic regions from SNP 80347 to 80947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,181 DEBUG Processing 91/713 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,202 DEBUG Processing 110/727 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,232 DEBUG Processing 91/687 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:53,246 DEBUG Processing 1079/1109 atomic regions from SNP 323574 to 324174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,277 DEBUG Processing 269/831 atomic regions from SNP 80647 to 81247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,394 DEBUG Processing 92/713 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,430 DEBUG Processing 111/727 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,452 DEBUG Processing 92/687 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:53,522 DEBUG Processing 270/831 atomic regions from SNP 80947 to 81547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,524 DEBUG Processing 1080/1109 atomic regions from SNP 323874 to 324474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,617 DEBUG Processing 93/713 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,667 DEBUG Processing 112/727 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:53,671 DEBUG Processing 93/687 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:53,764 DEBUG Processing 271/831 atomic regions from SNP 81247 to 81847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:53,796 DEBUG Processing 1081/1109 atomic regions from SNP 324174 to 324774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,844 DEBUG Processing 94/713 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:53,900 DEBUG Processing 94/687 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:53,903 DEBUG Processing 113/727 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,012 DEBUG Processing 272/831 atomic regions from SNP 81547 to 82147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,060 DEBUG Processing 95/713 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,068 DEBUG Processing 1082/1109 atomic regions from SNP 324474 to 325074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,131 DEBUG Processing 95/687 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:54,134 DEBUG Processing 114/727 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,266 DEBUG Processing 273/831 atomic regions from SNP 81847 to 82447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,270 DEBUG Processing 96/713 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,345 DEBUG Processing 1083/1109 atomic regions from SNP 324774 to 325374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,361 DEBUG Processing 96/687 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:54,361 DEBUG Processing 115/727 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,481 DEBUG Processing 97/713 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,540 DEBUG Processing 274/831 atomic regions from SNP 82147 to 82747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,592 DEBUG Processing 97/687 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:54,598 DEBUG Processing 116/727 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,647 DEBUG Processing 1084/1109 atomic regions from SNP 325074 to 325674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,710 DEBUG Processing 98/713 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,789 DEBUG Processing 275/831 atomic regions from SNP 82447 to 83047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:54,820 DEBUG Processing 98/687 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:54,836 DEBUG Processing 117/727 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:54,926 DEBUG Processing 99/713 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:54,954 DEBUG Processing 1085/1109 atomic regions from SNP 325374 to 325974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,032 DEBUG Processing 276/831 atomic regions from SNP 82747 to 83347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,048 DEBUG Processing 99/687 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:55,062 DEBUG Processing 118/727 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,134 DEBUG Processing 100/713 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,249 DEBUG Processing 1086/1109 atomic regions from SNP 325674 to 326274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,280 DEBUG Processing 100/687 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:55,284 DEBUG Processing 277/831 atomic regions from SNP 83047 to 83647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,294 DEBUG Processing 119/727 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,348 DEBUG Processing 101/713 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,512 DEBUG Processing 101/687 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:55,531 DEBUG Processing 120/727 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,540 DEBUG Processing 278/831 atomic regions from SNP 83347 to 83947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,565 DEBUG Processing 1087/1109 atomic regions from SNP 325974 to 326574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,588 DEBUG Processing 102/713 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,735 DEBUG Processing 102/687 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:55,766 DEBUG Processing 121/727 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:55,794 DEBUG Processing 279/831 atomic regions from SNP 83647 to 84247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:55,841 DEBUG Processing 103/713 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:55,885 DEBUG Processing 1088/1109 atomic regions from SNP 326274 to 326874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,949 DEBUG Processing 103/687 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:55,996 DEBUG Processing 122/727 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,046 DEBUG Processing 280/831 atomic regions from SNP 83947 to 84547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,068 DEBUG Processing 104/713 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,172 DEBUG Processing 104/687 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:56,185 DEBUG Processing 1089/1109 atomic regions from SNP 326574 to 327174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,224 DEBUG Processing 123/727 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,286 DEBUG Processing 105/713 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,298 DEBUG Processing 281/831 atomic regions from SNP 84247 to 84847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,401 DEBUG Processing 105/687 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:56,445 DEBUG Processing 124/727 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,498 DEBUG Processing 1090/1109 atomic regions from SNP 326874 to 327474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,499 DEBUG Processing 106/713 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,551 DEBUG Processing 282/831 atomic regions from SNP 84547 to 85147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,630 DEBUG Processing 106/687 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:56,669 DEBUG Processing 125/727 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,718 DEBUG Processing 107/713 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:56,796 DEBUG Processing 283/831 atomic regions from SNP 84847 to 85447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:56,809 DEBUG Processing 1091/1109 atomic regions from SNP 327174 to 327774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,882 DEBUG Processing 107/687 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:56,901 DEBUG Processing 126/727 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:56,931 DEBUG Processing 108/713 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,037 DEBUG Processing 284/831 atomic regions from SNP 85147 to 85747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,096 DEBUG Processing 1092/1109 atomic regions from SNP 327474 to 328074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,132 DEBUG Processing 108/687 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:57,141 DEBUG Processing 127/727 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,153 DEBUG Processing 109/713 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,286 DEBUG Processing 285/831 atomic regions from SNP 85447 to 86047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,371 DEBUG Processing 128/727 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,378 DEBUG Processing 110/713 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,384 DEBUG Processing 1093/1109 atomic regions from SNP 327774 to 328374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,397 DEBUG Processing 109/687 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:57,535 DEBUG Processing 286/831 atomic regions from SNP 85747 to 86347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,601 DEBUG Processing 129/727 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,603 DEBUG Processing 111/713 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,668 DEBUG Processing 110/687 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:57,673 DEBUG Processing 1094/1109 atomic regions from SNP 328074 to 328674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,789 DEBUG Processing 287/831 atomic regions from SNP 86047 to 86647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:57,826 DEBUG Processing 112/713 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:57,841 DEBUG Processing 130/727 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:57,934 DEBUG Processing 111/687 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:57,956 DEBUG Processing 1095/1109 atomic regions from SNP 328374 to 328974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,042 DEBUG Processing 288/831 atomic regions from SNP 86347 to 86947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,045 DEBUG Processing 113/713 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,084 DEBUG Processing 131/727 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,183 DEBUG Processing 112/687 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:58,246 DEBUG Processing 1096/1109 atomic regions from SNP 328674 to 329274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,274 DEBUG Processing 114/713 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,295 DEBUG Processing 289/831 atomic regions from SNP 86647 to 87247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,322 DEBUG Processing 132/727 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,437 DEBUG Processing 113/687 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:58,495 DEBUG Processing 115/713 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,528 DEBUG Processing 1097/1109 atomic regions from SNP 328974 to 329574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,550 DEBUG Processing 290/831 atomic regions from SNP 86947 to 87547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,558 DEBUG Processing 133/727 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,693 DEBUG Processing 114/687 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:58,702 DEBUG Processing 116/713 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,797 DEBUG Processing 134/727 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:58,804 DEBUG Processing 1098/1109 atomic regions from SNP 329274 to 329874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,809 DEBUG Processing 291/831 atomic regions from SNP 87247 to 87847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:58,911 DEBUG Processing 117/713 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:58,942 DEBUG Processing 115/687 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,032 DEBUG Processing 135/727 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,063 DEBUG Processing 292/831 atomic regions from SNP 87547 to 88147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,079 DEBUG Processing 1099/1109 atomic regions from SNP 329574 to 330174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,132 DEBUG Processing 118/713 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,176 DEBUG Processing 116/687 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,261 DEBUG Processing 136/727 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,311 DEBUG Processing 293/831 atomic regions from SNP 87847 to 88447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,355 DEBUG Processing 1100/1109 atomic regions from SNP 329874 to 330474 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,374 DEBUG Processing 119/713 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,405 DEBUG Processing 117/687 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,497 DEBUG Processing 137/727 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,575 DEBUG Processing 294/831 atomic regions from SNP 88147 to 88747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,610 DEBUG Processing 120/713 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,634 DEBUG Processing 1101/1109 atomic regions from SNP 330174 to 330774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,635 DEBUG Processing 118/687 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,726 DEBUG Processing 138/727 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:45:59,829 DEBUG Processing 295/831 atomic regions from SNP 88447 to 89047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:45:59,832 DEBUG Processing 121/713 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:45:59,859 DEBUG Processing 119/687 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:45:59,915 DEBUG Processing 1102/1109 atomic regions from SNP 330474 to 331074 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,958 DEBUG Processing 139/727 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,057 DEBUG Processing 122/713 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,084 DEBUG Processing 296/831 atomic regions from SNP 88747 to 89347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,087 DEBUG Processing 120/687 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,175 DEBUG Processing 140/727 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,187 DEBUG Processing 1103/1109 atomic regions from SNP 330774 to 331374 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,285 DEBUG Processing 123/713 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,324 DEBUG Processing 121/687 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,344 DEBUG Processing 297/831 atomic regions from SNP 89047 to 89647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,398 DEBUG Processing 141/727 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,454 DEBUG Processing 1104/1109 atomic regions from SNP 331074 to 331674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,506 DEBUG Processing 124/713 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,576 DEBUG Processing 122/687 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,606 DEBUG Processing 298/831 atomic regions from SNP 89347 to 89947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,635 DEBUG Processing 142/727 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,715 DEBUG Processing 125/713 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:00,727 DEBUG Processing 1105/1109 atomic regions from SNP 331374 to 331974 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,800 DEBUG Processing 123/687 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:00,857 DEBUG Processing 299/831 atomic regions from SNP 89647 to 90247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:00,872 DEBUG Processing 143/727 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:00,931 DEBUG Processing 126/713 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,003 DEBUG Processing 1106/1109 atomic regions from SNP 331674 to 332274 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,019 DEBUG Processing 124/687 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,111 DEBUG Processing 144/727 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,115 DEBUG Processing 300/831 atomic regions from SNP 89947 to 90547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,149 DEBUG Processing 127/713 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,235 DEBUG Processing 125/687 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,290 DEBUG Processing 1107/1109 atomic regions from SNP 331974 to 332574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,354 DEBUG Processing 145/727 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,370 DEBUG Processing 128/713 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,381 DEBUG Processing 301/831 atomic regions from SNP 90247 to 90847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,455 DEBUG Processing 126/687 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,564 DEBUG Processing 1108/1109 atomic regions from SNP 332274 to 332874 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,587 DEBUG Processing 146/727 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,602 DEBUG Processing 129/713 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,643 DEBUG Processing 302/831 atomic regions from SNP 90547 to 91147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,680 DEBUG Processing 127/687 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,812 DEBUG Processing 147/727 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:01,820 DEBUG Processing 130/713 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:01,839 DEBUG Processing 1109/1109 atomic regions from SNP 332574 to 333174 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,893 DEBUG Processing 303/831 atomic regions from SNP 90847 to 91447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:01,905 DEBUG Processing 128/687 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:01,978 DEBUG Unique SNPs positions in subchromosome 1: 333175 2025-01-31 09:46:02,032 DEBUG Processing 131/713 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,039 DEBUG Processing 148/727 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,131 DEBUG Processing 129/687 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,138 DEBUG Processing 304/831 atomic regions from SNP 91147 to 91747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,239 DEBUG Processing 132/713 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,271 DEBUG Processing 149/727 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,355 DEBUG Processing 130/687 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,389 DEBUG Processing 305/831 atomic regions from SNP 91447 to 92047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,451 DEBUG Processing 133/713 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,499 DEBUG Processing 150/727 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,580 DEBUG Processing 131/687 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,646 DEBUG Processing 306/831 atomic regions from SNP 91747 to 92347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,673 DEBUG Processing 134/713 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,723 DEBUG Processing 151/727 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:02,796 DEBUG Processing 132/687 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:02,898 DEBUG Processing 135/713 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:02,902 DEBUG Processing 307/831 atomic regions from SNP 92047 to 92647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:02,954 DEBUG Processing 152/727 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,021 DEBUG Processing 133/687 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,115 DEBUG Processing 136/713 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,164 DEBUG Processing 308/831 atomic regions from SNP 92347 to 92947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,200 DEBUG Processing 153/727 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,251 DEBUG Processing 134/687 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,323 DEBUG Processing 137/713 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,423 DEBUG Processing 309/831 atomic regions from SNP 92647 to 93247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,443 DEBUG Processing 154/727 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,480 DEBUG Processing 135/687 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,536 DEBUG Processing 138/713 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,680 DEBUG Processing 310/831 atomic regions from SNP 92947 to 93547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,686 DEBUG Processing 155/727 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,709 DEBUG Processing 136/687 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,752 DEBUG Processing 139/713 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:03,927 DEBUG Processing 156/727 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:03,934 DEBUG Processing 137/687 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:03,937 DEBUG Processing 311/831 atomic regions from SNP 93247 to 93847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:03,968 DEBUG Processing 140/713 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,158 DEBUG Processing 138/687 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,161 DEBUG Processing 157/727 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,185 DEBUG Processing 141/713 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,194 DEBUG Processing 312/831 atomic regions from SNP 93547 to 94147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,379 DEBUG Processing 139/687 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,395 DEBUG Processing 158/727 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,402 DEBUG Processing 142/713 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,445 DEBUG Processing 313/831 atomic regions from SNP 93847 to 94447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,602 DEBUG Processing 140/687 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,621 DEBUG Processing 143/713 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,636 DEBUG Processing 159/727 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,701 DEBUG Processing 314/831 atomic regions from SNP 94147 to 94747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:04,820 DEBUG Processing 141/687 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:04,834 DEBUG Processing 144/713 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:04,881 DEBUG Processing 160/727 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:04,959 DEBUG Processing 315/831 atomic regions from SNP 94447 to 95047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,039 DEBUG Processing 142/687 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,046 DEBUG Processing 145/713 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,124 DEBUG Processing 161/727 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,223 DEBUG Processing 316/831 atomic regions from SNP 94747 to 95347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,257 DEBUG Processing 146/713 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,260 DEBUG Processing 143/687 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,356 DEBUG Processing 162/727 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,485 DEBUG Processing 147/713 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,491 DEBUG Processing 317/831 atomic regions from SNP 95047 to 95647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,494 DEBUG Processing 144/687 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,589 DEBUG Processing 163/727 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,712 DEBUG Processing 148/713 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,730 DEBUG Processing 145/687 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:05,761 DEBUG Processing 318/831 atomic regions from SNP 95347 to 95947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,828 DEBUG Processing 164/727 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:05,930 DEBUG Processing 149/713 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:05,958 DEBUG Processing 146/687 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,023 DEBUG Processing 319/831 atomic regions from SNP 95647 to 96247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,071 DEBUG Processing 165/727 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,148 DEBUG Processing 150/713 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,187 DEBUG Processing 147/687 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,283 DEBUG Processing 320/831 atomic regions from SNP 95947 to 96547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,317 DEBUG Processing 166/727 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,369 DEBUG Processing 151/713 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,416 DEBUG Processing 148/687 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,539 DEBUG Processing 321/831 atomic regions from SNP 96247 to 96847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,554 DEBUG Processing 167/727 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,591 DEBUG Processing 152/713 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,640 DEBUG Processing 149/687 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:06,792 DEBUG Processing 168/727 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:06,793 DEBUG Processing 322/831 atomic regions from SNP 96547 to 97147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,812 DEBUG Processing 153/713 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:06,865 DEBUG Processing 150/687 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,026 DEBUG Processing 169/727 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,035 DEBUG Processing 154/713 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,045 DEBUG Processing 323/831 atomic regions from SNP 96847 to 97447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,092 DEBUG Processing 151/687 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,257 DEBUG Processing 155/713 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,262 DEBUG Processing 170/727 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,301 DEBUG Processing 324/831 atomic regions from SNP 97147 to 97747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,319 DEBUG Processing 152/687 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,476 DEBUG Processing 156/713 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,493 DEBUG Processing 171/727 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,537 DEBUG Processing 153/687 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,547 DEBUG Processing 325/831 atomic regions from SNP 97447 to 98047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,694 DEBUG Processing 157/713 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,727 DEBUG Processing 172/727 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,759 DEBUG Processing 154/687 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:07,797 DEBUG Processing 326/831 atomic regions from SNP 97747 to 98347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,906 DEBUG Processing 158/713 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:07,958 DEBUG Processing 173/727 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:07,984 DEBUG Processing 155/687 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,045 DEBUG Processing 327/831 atomic regions from SNP 98047 to 98647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,112 DEBUG Processing 159/713 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,189 DEBUG Processing 174/727 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,206 DEBUG Processing 156/687 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,300 DEBUG Processing 328/831 atomic regions from SNP 98347 to 98947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,331 DEBUG Processing 160/713 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,414 DEBUG Processing 175/727 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,427 DEBUG Processing 157/687 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,550 DEBUG Processing 161/713 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,552 DEBUG Processing 329/831 atomic regions from SNP 98647 to 99247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,647 DEBUG Processing 176/727 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,649 DEBUG Processing 158/687 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,757 DEBUG Processing 162/713 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:08,791 DEBUG Processing 330/831 atomic regions from SNP 98947 to 99547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,877 DEBUG Processing 159/687 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:08,884 DEBUG Processing 177/727 atomic regions from SNP 52976 to 53577 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:08,970 DEBUG Processing 163/713 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,032 DEBUG Processing 331/831 atomic regions from SNP 99247 to 99847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,100 DEBUG Processing 160/687 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,105 DEBUG Processing 178/727 atomic regions from SNP 53277 to 53878 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,180 DEBUG Processing 164/713 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,282 DEBUG Processing 332/831 atomic regions from SNP 99547 to 100147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,319 DEBUG Processing 161/687 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,325 DEBUG Processing 179/727 atomic regions from SNP 53578 to 54179 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,395 DEBUG Processing 165/713 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,545 DEBUG Processing 333/831 atomic regions from SNP 99847 to 100447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,546 DEBUG Processing 162/687 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,559 DEBUG Processing 180/727 atomic regions from SNP 53879 to 54480 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,610 DEBUG Processing 166/713 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,770 DEBUG Processing 163/687 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:09,808 DEBUG Processing 181/727 atomic regions from SNP 54180 to 54781 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:09,809 DEBUG Processing 334/831 atomic regions from SNP 100147 to 100747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,836 DEBUG Processing 167/713 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:09,992 DEBUG Processing 164/687 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,063 DEBUG Processing 168/713 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,064 DEBUG Processing 182/727 atomic regions from SNP 54481 to 55082 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,080 DEBUG Processing 335/831 atomic regions from SNP 100447 to 101047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,205 DEBUG Processing 165/687 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,284 DEBUG Processing 169/713 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,304 DEBUG Processing 183/727 atomic regions from SNP 54782 to 55383 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,345 DEBUG Processing 336/831 atomic regions from SNP 100747 to 101347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,427 DEBUG Processing 166/687 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,494 DEBUG Processing 170/713 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,531 DEBUG Processing 184/727 atomic regions from SNP 55083 to 55684 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,600 DEBUG Processing 337/831 atomic regions from SNP 101047 to 101647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,653 DEBUG Processing 167/687 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,709 DEBUG Processing 171/713 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:10,768 DEBUG Processing 185/727 atomic regions from SNP 55384 to 55985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:10,851 DEBUG Processing 338/831 atomic regions from SNP 101347 to 101947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,873 DEBUG Processing 168/687 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:10,923 DEBUG Processing 172/713 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,009 DEBUG Processing 186/727 atomic regions from SNP 55685 to 56286 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,099 DEBUG Processing 169/687 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,106 DEBUG Processing 339/831 atomic regions from SNP 101647 to 102247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,143 DEBUG Processing 173/713 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,243 DEBUG Processing 187/727 atomic regions from SNP 55986 to 56587 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,330 DEBUG Processing 170/687 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,365 DEBUG Processing 340/831 atomic regions from SNP 101947 to 102547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,367 DEBUG Processing 174/713 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,472 DEBUG Processing 188/727 atomic regions from SNP 56287 to 56888 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,552 DEBUG Processing 171/687 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,587 DEBUG Processing 175/713 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,620 DEBUG Processing 341/831 atomic regions from SNP 102247 to 102847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,705 DEBUG Processing 189/727 atomic regions from SNP 56588 to 57189 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,770 DEBUG Processing 172/687 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:11,804 DEBUG Processing 176/713 atomic regions from SNP 52675 to 53276 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:11,868 DEBUG Processing 342/831 atomic regions from SNP 102547 to 103147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,938 DEBUG Processing 190/727 atomic regions from SNP 56889 to 57490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:11,989 DEBUG Processing 173/687 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,015 DEBUG Processing 177/713 atomic regions from SNP 52976 to 53577 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,107 DEBUG Processing 343/831 atomic regions from SNP 102847 to 103447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,163 DEBUG Processing 191/727 atomic regions from SNP 57190 to 57791 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,207 DEBUG Processing 174/687 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,226 DEBUG Processing 178/713 atomic regions from SNP 53277 to 53878 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,347 DEBUG Processing 344/831 atomic regions from SNP 103147 to 103747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,397 DEBUG Processing 192/727 atomic regions from SNP 57491 to 58092 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,434 DEBUG Processing 175/687 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,444 DEBUG Processing 179/713 atomic regions from SNP 53578 to 54179 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,603 DEBUG Processing 345/831 atomic regions from SNP 103447 to 104047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,629 DEBUG Processing 193/727 atomic regions from SNP 57792 to 58393 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,652 DEBUG Processing 176/687 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,666 DEBUG Processing 180/713 atomic regions from SNP 53879 to 54480 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:12,847 DEBUG Processing 346/831 atomic regions from SNP 103747 to 104347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,851 DEBUG Processing 194/727 atomic regions from SNP 58093 to 58694 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:12,867 DEBUG Processing 177/687 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:12,872 DEBUG Processing 181/713 atomic regions from SNP 54180 to 54781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,085 DEBUG Processing 195/727 atomic regions from SNP 58394 to 58995 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,089 DEBUG Processing 182/713 atomic regions from SNP 54481 to 55082 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,090 DEBUG Processing 178/687 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,100 DEBUG Processing 347/831 atomic regions from SNP 104047 to 104647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,312 DEBUG Processing 183/713 atomic regions from SNP 54782 to 55383 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,319 DEBUG Processing 179/687 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,323 DEBUG Processing 196/727 atomic regions from SNP 58695 to 59296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,353 DEBUG Processing 348/831 atomic regions from SNP 104347 to 104947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,519 DEBUG Processing 184/713 atomic regions from SNP 55083 to 55684 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,536 DEBUG Processing 180/687 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,550 DEBUG Processing 197/727 atomic regions from SNP 58996 to 59597 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,597 DEBUG Processing 349/831 atomic regions from SNP 104647 to 105247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,721 DEBUG Processing 185/713 atomic regions from SNP 55384 to 55985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,746 DEBUG Processing 181/687 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:13,781 DEBUG Processing 198/727 atomic regions from SNP 59297 to 59898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:13,842 DEBUG Processing 350/831 atomic regions from SNP 104947 to 105547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,930 DEBUG Processing 186/713 atomic regions from SNP 55685 to 56286 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:13,959 DEBUG Processing 182/687 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,008 DEBUG Processing 199/727 atomic regions from SNP 59598 to 60199 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,088 DEBUG Processing 351/831 atomic regions from SNP 105247 to 105847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,144 DEBUG Processing 187/713 atomic regions from SNP 55986 to 56587 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,178 DEBUG Processing 183/687 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,235 DEBUG Processing 200/727 atomic regions from SNP 59899 to 60500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,335 DEBUG Processing 352/831 atomic regions from SNP 105547 to 106147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,359 DEBUG Processing 188/713 atomic regions from SNP 56287 to 56888 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,401 DEBUG Processing 184/687 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,458 DEBUG Processing 201/727 atomic regions from SNP 60200 to 60801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,574 DEBUG Processing 189/713 atomic regions from SNP 56588 to 57189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,586 DEBUG Processing 353/831 atomic regions from SNP 105847 to 106447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,628 DEBUG Processing 185/687 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,679 DEBUG Processing 202/727 atomic regions from SNP 60501 to 61102 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,790 DEBUG Processing 190/713 atomic regions from SNP 56889 to 57490 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:14,846 DEBUG Processing 354/831 atomic regions from SNP 106147 to 106747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,858 DEBUG Processing 186/687 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:14,918 DEBUG Processing 203/727 atomic regions from SNP 60802 to 61403 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:14,990 DEBUG Processing 191/713 atomic regions from SNP 57190 to 57791 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,079 DEBUG Processing 187/687 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,096 DEBUG Processing 355/831 atomic regions from SNP 106447 to 107047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,156 DEBUG Processing 204/727 atomic regions from SNP 61103 to 61704 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,198 DEBUG Processing 192/713 atomic regions from SNP 57491 to 58092 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,289 DEBUG Processing 188/687 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,335 DEBUG Processing 356/831 atomic regions from SNP 106747 to 107347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,387 DEBUG Processing 205/727 atomic regions from SNP 61404 to 62005 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,410 DEBUG Processing 193/713 atomic regions from SNP 57792 to 58393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,503 DEBUG Processing 189/687 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,578 DEBUG Processing 357/831 atomic regions from SNP 107047 to 107647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,615 DEBUG Processing 206/727 atomic regions from SNP 61705 to 62306 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,620 DEBUG Processing 194/713 atomic regions from SNP 58093 to 58694 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,724 DEBUG Processing 190/687 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:15,829 DEBUG Processing 358/831 atomic regions from SNP 107347 to 107947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,831 DEBUG Processing 195/713 atomic regions from SNP 58394 to 58995 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:15,844 DEBUG Processing 207/727 atomic regions from SNP 62006 to 62607 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:15,934 DEBUG Processing 191/687 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,052 DEBUG Processing 196/713 atomic regions from SNP 58695 to 59296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,078 DEBUG Processing 208/727 atomic regions from SNP 62307 to 62908 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,084 DEBUG Processing 359/831 atomic regions from SNP 107647 to 108247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,143 DEBUG Processing 192/687 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,268 DEBUG Processing 197/713 atomic regions from SNP 58996 to 59597 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,310 DEBUG Processing 209/727 atomic regions from SNP 62608 to 63209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,337 DEBUG Processing 360/831 atomic regions from SNP 107947 to 108547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,358 DEBUG Processing 193/687 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,474 DEBUG Processing 198/713 atomic regions from SNP 59297 to 59898 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,545 DEBUG Processing 210/727 atomic regions from SNP 62909 to 63510 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,583 DEBUG Processing 194/687 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,588 DEBUG Processing 361/831 atomic regions from SNP 108247 to 108847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,680 DEBUG Processing 199/713 atomic regions from SNP 59598 to 60199 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:16,802 DEBUG Processing 211/727 atomic regions from SNP 63210 to 63811 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:16,803 DEBUG Processing 195/687 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:16,851 DEBUG Processing 362/831 atomic regions from SNP 108547 to 109147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,890 DEBUG Processing 200/713 atomic regions from SNP 59899 to 60500 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,017 DEBUG Processing 196/687 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,053 DEBUG Processing 212/727 atomic regions from SNP 63511 to 64112 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,106 DEBUG Processing 363/831 atomic regions from SNP 108847 to 109447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,106 DEBUG Processing 201/713 atomic regions from SNP 60200 to 60801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,234 DEBUG Processing 197/687 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,293 DEBUG Processing 213/727 atomic regions from SNP 63812 to 64413 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,319 DEBUG Processing 202/713 atomic regions from SNP 60501 to 61102 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,356 DEBUG Processing 364/831 atomic regions from SNP 109147 to 109747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,489 DEBUG Processing 198/687 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,594 DEBUG Processing 214/727 atomic regions from SNP 64113 to 64714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,597 DEBUG Processing 203/713 atomic regions from SNP 60802 to 61403 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:17,695 DEBUG Processing 365/831 atomic regions from SNP 109447 to 110047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,930 DEBUG Processing 199/687 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:17,997 DEBUG Processing 215/727 atomic regions from SNP 64414 to 65015 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:17,998 DEBUG Processing 204/713 atomic regions from SNP 61103 to 61704 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,077 DEBUG Processing 366/831 atomic regions from SNP 109747 to 110347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,189 DEBUG Processing 200/687 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,242 DEBUG Processing 205/713 atomic regions from SNP 61404 to 62005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,249 DEBUG Processing 216/727 atomic regions from SNP 64715 to 65316 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,404 DEBUG Processing 367/831 atomic regions from SNP 110047 to 110647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,466 DEBUG Processing 201/687 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,526 DEBUG Processing 206/713 atomic regions from SNP 61705 to 62306 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,559 DEBUG Processing 217/727 atomic regions from SNP 65016 to 65617 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,718 DEBUG Processing 368/831 atomic regions from SNP 110347 to 110947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,724 DEBUG Processing 202/687 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,760 DEBUG Processing 207/713 atomic regions from SNP 62006 to 62607 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:18,795 DEBUG Processing 218/727 atomic regions from SNP 65317 to 65918 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:18,944 DEBUG Processing 203/687 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:18,958 DEBUG Processing 369/831 atomic regions from SNP 110647 to 111247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,979 DEBUG Processing 208/713 atomic regions from SNP 62307 to 62908 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,040 DEBUG Processing 219/727 atomic regions from SNP 65618 to 66219 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,180 DEBUG Processing 204/687 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,200 DEBUG Processing 209/713 atomic regions from SNP 62608 to 63209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,211 DEBUG Processing 370/831 atomic regions from SNP 110947 to 111547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,272 DEBUG Processing 220/727 atomic regions from SNP 65919 to 66520 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,398 DEBUG Processing 205/687 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,413 DEBUG Processing 210/713 atomic regions from SNP 62909 to 63510 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,457 DEBUG Processing 371/831 atomic regions from SNP 111247 to 111847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,493 DEBUG Processing 221/727 atomic regions from SNP 66220 to 66821 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,620 DEBUG Processing 206/687 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,629 DEBUG Processing 211/713 atomic regions from SNP 63210 to 63811 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,719 DEBUG Processing 372/831 atomic regions from SNP 111547 to 112147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,739 DEBUG Processing 222/727 atomic regions from SNP 66521 to 67122 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:19,842 DEBUG Processing 207/687 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:19,845 DEBUG Processing 212/713 atomic regions from SNP 63511 to 64112 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:19,974 DEBUG Processing 373/831 atomic regions from SNP 111847 to 112447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,978 DEBUG Processing 223/727 atomic regions from SNP 66822 to 67423 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,066 DEBUG Processing 213/713 atomic regions from SNP 63812 to 64413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,099 DEBUG Processing 208/687 atomic regions from SNP 62307 to 62908 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,240 DEBUG Processing 374/831 atomic regions from SNP 112147 to 112747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,247 DEBUG Processing 224/727 atomic regions from SNP 67123 to 67724 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,289 DEBUG Processing 214/713 atomic regions from SNP 64113 to 64713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,357 DEBUG Processing 209/687 atomic regions from SNP 62608 to 63209 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,491 DEBUG Processing 375/831 atomic regions from SNP 112447 to 113047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,500 DEBUG Processing 215/713 atomic regions from SNP 64413 to 65013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,505 DEBUG Processing 225/727 atomic regions from SNP 67424 to 68025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,577 DEBUG Processing 210/687 atomic regions from SNP 62909 to 63510 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,708 DEBUG Processing 216/713 atomic regions from SNP 64713 to 65313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,742 DEBUG Processing 376/831 atomic regions from SNP 112747 to 113347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,761 DEBUG Processing 226/727 atomic regions from SNP 67725 to 68326 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:20,795 DEBUG Processing 211/687 atomic regions from SNP 63210 to 63811 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:20,916 DEBUG Processing 217/713 atomic regions from SNP 65013 to 65613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:20,997 DEBUG Processing 377/831 atomic regions from SNP 113047 to 113647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,000 DEBUG Processing 227/727 atomic regions from SNP 68026 to 68627 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,012 DEBUG Processing 212/687 atomic regions from SNP 63511 to 64112 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,124 DEBUG Processing 218/713 atomic regions from SNP 65313 to 65913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,230 DEBUG Processing 213/687 atomic regions from SNP 63812 to 64413 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,238 DEBUG Processing 228/727 atomic regions from SNP 68327 to 68928 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,252 DEBUG Processing 378/831 atomic regions from SNP 113347 to 113947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,328 DEBUG Processing 219/713 atomic regions from SNP 65613 to 66213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,443 DEBUG Processing 214/687 atomic regions from SNP 64113 to 64714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,468 DEBUG Processing 229/727 atomic regions from SNP 68628 to 69229 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,497 DEBUG Processing 379/831 atomic regions from SNP 113647 to 114247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,533 DEBUG Processing 220/713 atomic regions from SNP 65913 to 66513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,651 DEBUG Processing 215/687 atomic regions from SNP 64414 to 65015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,677 DEBUG Subchromosome time: 370.07954856799915, subchromosome SNPs: 333175 2025-01-31 09:46:21,678 DEBUG Estimated BADs: [0.38, 2.26, 0.38, 2.26, 1.13, 0.38, 2.26, 1.13, 2.26, 0.56, 11.29, 1.13, 6.77, 1.13, 6.77, 2.26, 0.56, 1.13, 0.23, 2.26, 0.56, 1.13, 3.39, 1.13, 0.38, 2.26, 1.13, 3.39, 2.26, 1.13, 4.52, 2.26] SNP counts: [10283, 653, 38645, 11294, 8489, 12853, 1831, 9035, 12592, 12476, 185, 3600, 1962, 17969, 997, 13428, 19882, 3216, 16242, 3316, 9328, 10172, 9227, 7823, 17085, 38408, 10742, 5483, 7450, 10363, 1942, 6204] SNP IDs counts: [10283, 653, 38645, 11294, 8489, 12853, 1831, 9035, 12592, 12476, 185, 3600, 1962, 17969, 997, 13428, 19882, 3216, 16242, 3316, 9328, 10172, 9227, 7823, 17085, 38408, 10742, 5483, 7450, 10363, 1942, 6204] Critical gap: 765867bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.89Mbp, 33.45Mbp, 39.51Mbp, 44.17Mbp, 52.10Mbp, 53.14Mbp, 58.21Mbp, 65.14Mbp, 72.21Mbp, 72.31Mbp, 74.26Mbp, 75.36Mbp, 86.02Mbp, 86.54Mbp, 93.73Mbp, 105.95Mbp, 107.78Mbp, 118.31Mbp, 120.06Mbp, 125.39Mbp, 131.02Mbp, 135.88Mbp, 140.39Mbp, 151.02Mbp, 172.08Mbp, 178.30Mbp, 181.21Mbp, 185.33Mbp, 190.89Mbp, 191.92Mbp, 195.47Mbp] 2025-01-31 09:46:21,678 DEBUG chr1 time: 370.08019386499655 s 2025-01-31 09:46:21,691 DEBUG Processing 230/727 atomic regions from SNP 68929 to 69530 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,741 DEBUG Processing 221/713 atomic regions from SNP 66213 to 66813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:21,757 DEBUG Processing 380/831 atomic regions from SNP 113947 to 114547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,863 DEBUG chr1: Fitting background model for 32 segments 2025-01-31 09:46:21,867 DEBUG Processing 216/687 atomic regions from SNP 64715 to 65316 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:21,911 DEBUG Processing 231/727 atomic regions from SNP 69230 to 69831 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:21,951 DEBUG Processing 222/713 atomic regions from SNP 66513 to 67113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,019 DEBUG Processing 381/831 atomic regions from SNP 114247 to 114847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,085 DEBUG Processing 217/687 atomic regions from SNP 65016 to 65617 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,144 DEBUG Processing 232/727 atomic regions from SNP 69531 to 70132 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,162 DEBUG Processing 223/713 atomic regions from SNP 66813 to 67413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,258 DEBUG Processing 382/831 atomic regions from SNP 114547 to 115147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,309 DEBUG Processing 218/687 atomic regions from SNP 65317 to 65918 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,382 DEBUG Processing 224/713 atomic regions from SNP 67113 to 67713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,387 DEBUG Processing 233/727 atomic regions from SNP 69832 to 70433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,493 DEBUG Processing 383/831 atomic regions from SNP 114847 to 115447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,523 DEBUG Processing 219/687 atomic regions from SNP 65618 to 66219 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,594 DEBUG Processing 225/713 atomic regions from SNP 67413 to 68013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,613 DEBUG Processing 234/727 atomic regions from SNP 70133 to 70734 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,729 DEBUG Processing 384/831 atomic regions from SNP 115147 to 115747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,738 DEBUG Processing 220/687 atomic regions from SNP 65919 to 66520 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,799 DEBUG Processing 226/713 atomic regions from SNP 67713 to 68313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:22,832 DEBUG Processing 235/727 atomic regions from SNP 70434 to 71035 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:22,957 DEBUG Processing 221/687 atomic regions from SNP 66220 to 66821 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:22,991 DEBUG Processing 385/831 atomic regions from SNP 115447 to 116047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,011 DEBUG Processing 227/713 atomic regions from SNP 68013 to 68613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,055 DEBUG Processing 236/727 atomic regions from SNP 70735 to 71336 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,177 DEBUG Processing 222/687 atomic regions from SNP 66521 to 67122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,226 DEBUG Processing 228/713 atomic regions from SNP 68313 to 68913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,239 DEBUG Processing 386/831 atomic regions from SNP 115747 to 116347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,282 DEBUG Processing 237/727 atomic regions from SNP 71036 to 71637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,384 DEBUG Processing 223/687 atomic regions from SNP 66822 to 67423 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,438 DEBUG Processing 229/713 atomic regions from SNP 68613 to 69213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,497 DEBUG Processing 387/831 atomic regions from SNP 116047 to 116647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,520 DEBUG Processing 238/727 atomic regions from SNP 71337 to 71938 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,595 DEBUG Processing 224/687 atomic regions from SNP 67123 to 67724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,642 DEBUG Processing 230/713 atomic regions from SNP 68913 to 69513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,744 DEBUG Processing 388/831 atomic regions from SNP 116347 to 116947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,752 DEBUG Processing 239/727 atomic regions from SNP 71638 to 72239 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,814 DEBUG Processing 225/687 atomic regions from SNP 67424 to 68025 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:23,848 DEBUG Processing 231/713 atomic regions from SNP 69213 to 69813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:23,987 DEBUG Processing 240/727 atomic regions from SNP 71939 to 72540 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:23,994 DEBUG Processing 389/831 atomic regions from SNP 116647 to 117247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,038 DEBUG Processing 226/687 atomic regions from SNP 67725 to 68326 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,062 DEBUG Processing 232/713 atomic regions from SNP 69513 to 70113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,213 DEBUG Processing 241/727 atomic regions from SNP 72240 to 72841 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,253 DEBUG Processing 390/831 atomic regions from SNP 116947 to 117547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,262 DEBUG Processing 227/687 atomic regions from SNP 68026 to 68627 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,275 DEBUG Processing 233/713 atomic regions from SNP 69813 to 70413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,443 DEBUG Processing 242/727 atomic regions from SNP 72541 to 73142 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,487 DEBUG Processing 228/687 atomic regions from SNP 68327 to 68928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,492 DEBUG Processing 234/713 atomic regions from SNP 70113 to 70713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,526 DEBUG Processing 391/831 atomic regions from SNP 117247 to 117847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,663 DEBUG Processing 243/727 atomic regions from SNP 72842 to 73443 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,703 DEBUG Processing 235/713 atomic regions from SNP 70413 to 71013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,705 DEBUG Processing 229/687 atomic regions from SNP 68628 to 69228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:24,783 DEBUG Processing 392/831 atomic regions from SNP 117547 to 118147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,878 DEBUG Processing 244/727 atomic regions from SNP 73143 to 73744 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:24,911 DEBUG Processing 236/713 atomic regions from SNP 70713 to 71313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:24,921 DEBUG Processing 230/687 atomic regions from SNP 68928 to 69528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,020 DEBUG Processing 393/831 atomic regions from SNP 117847 to 118447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,097 DEBUG Processing 245/727 atomic regions from SNP 73444 to 74045 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,128 DEBUG Processing 237/713 atomic regions from SNP 71013 to 71613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,144 DEBUG Processing 231/687 atomic regions from SNP 69228 to 69828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,253 DEBUG Processing 394/831 atomic regions from SNP 118147 to 118747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,322 DEBUG Processing 246/727 atomic regions from SNP 73745 to 74346 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,339 DEBUG Processing 238/713 atomic regions from SNP 71313 to 71913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,366 DEBUG Processing 232/687 atomic regions from SNP 69528 to 70128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,485 DEBUG Processing 395/831 atomic regions from SNP 118447 to 119047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,544 DEBUG Processing 247/727 atomic regions from SNP 74046 to 74647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,545 DEBUG Processing 239/713 atomic regions from SNP 71613 to 72213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,609 DEBUG Processing 233/687 atomic regions from SNP 69828 to 70428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,715 DEBUG Processing 396/831 atomic regions from SNP 118747 to 119347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,751 DEBUG Processing 240/713 atomic regions from SNP 71913 to 72513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,758 DEBUG Processing 248/727 atomic regions from SNP 74347 to 74948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:25,825 DEBUG Processing 234/687 atomic regions from SNP 70128 to 70728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:25,955 DEBUG Processing 397/831 atomic regions from SNP 119047 to 119647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,960 DEBUG Processing 241/713 atomic regions from SNP 72213 to 72813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:25,983 DEBUG Processing 249/727 atomic regions from SNP 74648 to 75249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,042 DEBUG Processing 235/687 atomic regions from SNP 70428 to 71028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,170 DEBUG Processing 242/713 atomic regions from SNP 72513 to 73113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,200 DEBUG Processing 398/831 atomic regions from SNP 119347 to 119947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,207 DEBUG Processing 250/727 atomic regions from SNP 74949 to 75550 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,262 DEBUG Processing 236/687 atomic regions from SNP 70728 to 71328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,385 DEBUG Processing 243/713 atomic regions from SNP 72813 to 73413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,436 DEBUG Processing 251/727 atomic regions from SNP 75250 to 75851 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,448 DEBUG Processing 399/831 atomic regions from SNP 119647 to 120247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,473 DEBUG Processing 237/687 atomic regions from SNP 71028 to 71628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,602 DEBUG Processing 244/713 atomic regions from SNP 73113 to 73713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,665 DEBUG Processing 252/727 atomic regions from SNP 75551 to 76152 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,692 DEBUG Processing 400/831 atomic regions from SNP 119947 to 120547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,700 DEBUG Processing 238/687 atomic regions from SNP 71328 to 71928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,781 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:46:26,818 DEBUG Processing 245/713 atomic regions from SNP 73413 to 74013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:26,898 DEBUG Processing 253/727 atomic regions from SNP 75852 to 76453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:26,945 DEBUG Processing 239/687 atomic regions from SNP 71628 to 72228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:26,958 DEBUG Processing 401/831 atomic regions from SNP 120247 to 120847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,054 DEBUG Processing 246/713 atomic regions from SNP 73713 to 74313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,205 DEBUG Processing 254/727 atomic regions from SNP 76153 to 76754 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,246 DEBUG Processing 240/687 atomic regions from SNP 71928 to 72528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,283 DEBUG Processing 402/831 atomic regions from SNP 120547 to 121147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,348 DEBUG Processing 247/713 atomic regions from SNP 74013 to 74613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,565 DEBUG Processing 255/727 atomic regions from SNP 76454 to 77055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:27,626 DEBUG Processing 241/687 atomic regions from SNP 72228 to 72828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:27,675 DEBUG Processing 403/831 atomic regions from SNP 120847 to 121447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,728 DEBUG Processing 248/713 atomic regions from SNP 74313 to 74913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:27,931 DEBUG Processing 256/727 atomic regions from SNP 76755 to 77356 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,048 DEBUG Processing 242/687 atomic regions from SNP 72528 to 73128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,112 DEBUG Processing 404/831 atomic regions from SNP 121147 to 121747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,139 DEBUG Processing 249/713 atomic regions from SNP 74613 to 75213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,329 DEBUG Processing 257/727 atomic regions from SNP 77056 to 77657 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,380 DEBUG Processing 243/687 atomic regions from SNP 72828 to 73428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,415 DEBUG Processing 250/713 atomic regions from SNP 74913 to 75513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,427 DEBUG Processing 405/831 atomic regions from SNP 121447 to 122047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,591 DEBUG Processing 258/727 atomic regions from SNP 77357 to 77958 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:28,658 DEBUG Processing 244/687 atomic regions from SNP 73128 to 73728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:28,679 DEBUG Processing 251/713 atomic regions from SNP 75213 to 75813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:28,720 DEBUG Processing 406/831 atomic regions from SNP 121747 to 122347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,921 DEBUG Processing 259/727 atomic regions from SNP 77658 to 78259 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,009 DEBUG Processing 252/713 atomic regions from SNP 75513 to 76113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,013 DEBUG Processing 245/687 atomic regions from SNP 73428 to 74028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,064 DEBUG Processing 407/831 atomic regions from SNP 122047 to 122647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,168 DEBUG Processing 260/727 atomic regions from SNP 77959 to 78560 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,240 DEBUG Processing 253/713 atomic regions from SNP 75813 to 76413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,261 DEBUG Processing 246/687 atomic regions from SNP 73728 to 74328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,325 DEBUG Processing 408/831 atomic regions from SNP 122347 to 122947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,405 DEBUG Processing 261/727 atomic regions from SNP 78260 to 78861 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,452 DEBUG Processing 254/713 atomic regions from SNP 76113 to 76713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,480 DEBUG Processing 247/687 atomic regions from SNP 74028 to 74628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,586 DEBUG Processing 409/831 atomic regions from SNP 122647 to 123247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,693 DEBUG Processing 262/727 atomic regions from SNP 78561 to 79162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:29,695 DEBUG Processing 255/713 atomic regions from SNP 76413 to 77013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,789 DEBUG Processing 248/687 atomic regions from SNP 74328 to 74928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:29,905 DEBUG Processing 410/831 atomic regions from SNP 122947 to 123547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,936 DEBUG Processing 256/713 atomic regions from SNP 76713 to 77313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:29,942 DEBUG Processing 263/727 atomic regions from SNP 78862 to 79462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,058 DEBUG Processing 249/687 atomic regions from SNP 74628 to 75228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,199 DEBUG Processing 411/831 atomic regions from SNP 123247 to 123847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,211 DEBUG Processing 257/713 atomic regions from SNP 77013 to 77613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,242 DEBUG Processing 264/727 atomic regions from SNP 79162 to 79762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,313 DEBUG Processing 250/687 atomic regions from SNP 74928 to 75528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,544 DEBUG Processing 258/713 atomic regions from SNP 77313 to 77913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,573 DEBUG Processing 412/831 atomic regions from SNP 123547 to 124147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,578 DEBUG Processing 265/727 atomic regions from SNP 79462 to 80062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,625 DEBUG Processing 251/687 atomic regions from SNP 75228 to 75828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,936 DEBUG Processing 259/713 atomic regions from SNP 77613 to 78213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:30,954 DEBUG Processing 266/727 atomic regions from SNP 79762 to 80362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:30,962 DEBUG Processing 252/687 atomic regions from SNP 75528 to 76128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:30,975 DEBUG Processing 413/831 atomic regions from SNP 123847 to 124447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,185 DEBUG Processing 260/713 atomic regions from SNP 77913 to 78513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,223 DEBUG Processing 267/727 atomic regions from SNP 80062 to 80662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,234 DEBUG Processing 253/687 atomic regions from SNP 75828 to 76428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,250 DEBUG Processing 414/831 atomic regions from SNP 124147 to 124747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,426 DEBUG Processing 261/713 atomic regions from SNP 78213 to 78813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,505 DEBUG Processing 254/687 atomic regions from SNP 76128 to 76728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,553 DEBUG Processing 268/727 atomic regions from SNP 80362 to 80962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,595 DEBUG Processing 415/831 atomic regions from SNP 124447 to 125047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,674 DEBUG Processing 262/713 atomic regions from SNP 78513 to 79113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,740 DEBUG Processing 255/687 atomic regions from SNP 76428 to 77028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:31,786 DEBUG Processing 269/727 atomic regions from SNP 80662 to 81262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:31,850 DEBUG Processing 416/831 atomic regions from SNP 124747 to 125347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,887 DEBUG Processing 263/713 atomic regions from SNP 78813 to 79413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:31,957 DEBUG Processing 256/687 atomic regions from SNP 76728 to 77328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,006 DEBUG Processing 270/727 atomic regions from SNP 80962 to 81562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,087 DEBUG Processing 417/831 atomic regions from SNP 125047 to 125647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,098 DEBUG Processing 264/713 atomic regions from SNP 79113 to 79713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,171 DEBUG Processing 257/687 atomic regions from SNP 77028 to 77628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,238 DEBUG Processing 271/727 atomic regions from SNP 81262 to 81862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,316 DEBUG Processing 265/713 atomic regions from SNP 79413 to 80013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,331 DEBUG Processing 418/831 atomic regions from SNP 125347 to 125947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,388 DEBUG Processing 258/687 atomic regions from SNP 77328 to 77928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,474 DEBUG Processing 272/727 atomic regions from SNP 81562 to 82162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,536 DEBUG Processing 266/713 atomic regions from SNP 79713 to 80313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,588 DEBUG Processing 419/831 atomic regions from SNP 125647 to 126247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,605 DEBUG Processing 259/687 atomic regions from SNP 77628 to 78228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,698 DEBUG Processing 273/727 atomic regions from SNP 81862 to 82462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,751 DEBUG Processing 267/713 atomic regions from SNP 80013 to 80613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:32,829 DEBUG Processing 260/687 atomic regions from SNP 77928 to 78528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:32,841 DEBUG Processing 420/831 atomic regions from SNP 125947 to 126547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,914 DEBUG Processing 274/727 atomic regions from SNP 82162 to 82762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:32,954 DEBUG Processing 268/713 atomic regions from SNP 80313 to 80913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,056 DEBUG Processing 261/687 atomic regions from SNP 78228 to 78828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,093 DEBUG Processing 421/831 atomic regions from SNP 126247 to 126847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,143 DEBUG Processing 275/727 atomic regions from SNP 82462 to 83062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,159 DEBUG Processing 269/713 atomic regions from SNP 80613 to 81213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,273 DEBUG Processing 262/687 atomic regions from SNP 78528 to 79128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,346 DEBUG Processing 422/831 atomic regions from SNP 126547 to 127147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,376 DEBUG Processing 270/713 atomic regions from SNP 80913 to 81513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,379 DEBUG Processing 276/727 atomic regions from SNP 82762 to 83362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,486 DEBUG Processing 263/687 atomic regions from SNP 78828 to 79428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,588 DEBUG Processing 423/831 atomic regions from SNP 126847 to 127447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,589 DEBUG Processing 271/713 atomic regions from SNP 81213 to 81813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,602 DEBUG Processing 277/727 atomic regions from SNP 83062 to 83662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,695 DEBUG Processing 264/687 atomic regions from SNP 79128 to 79728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,796 DEBUG Processing 272/713 atomic regions from SNP 81513 to 82113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:33,821 DEBUG Processing 278/727 atomic regions from SNP 83362 to 83962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:33,826 DEBUG Processing 424/831 atomic regions from SNP 127147 to 127747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,922 DEBUG Processing 265/687 atomic regions from SNP 79428 to 80028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:33,998 DEBUG Processing 273/713 atomic regions from SNP 81813 to 82413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,043 DEBUG Processing 279/727 atomic regions from SNP 83662 to 84262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,066 DEBUG Processing 425/831 atomic regions from SNP 127447 to 128047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,170 DEBUG Processing 266/687 atomic regions from SNP 79728 to 80328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,200 DEBUG Processing 274/713 atomic regions from SNP 82113 to 82713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,269 DEBUG Processing 280/727 atomic regions from SNP 83962 to 84562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,308 DEBUG Processing 426/831 atomic regions from SNP 127747 to 128347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,396 DEBUG Processing 267/687 atomic regions from SNP 80028 to 80628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,405 DEBUG Processing 275/713 atomic regions from SNP 82413 to 83013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,479 DEBUG Processing 281/727 atomic regions from SNP 84262 to 84862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,543 DEBUG Processing 427/831 atomic regions from SNP 128047 to 128647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,609 DEBUG Processing 268/687 atomic regions from SNP 80328 to 80928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,611 DEBUG Processing 276/713 atomic regions from SNP 82713 to 83313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,688 DEBUG Processing 282/727 atomic regions from SNP 84562 to 85162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:34,777 DEBUG Processing 428/831 atomic regions from SNP 128347 to 128947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,819 DEBUG Processing 277/713 atomic regions from SNP 83013 to 83613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:34,826 DEBUG Processing 269/687 atomic regions from SNP 80628 to 81228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:34,904 DEBUG Processing 283/727 atomic regions from SNP 84862 to 85462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,007 DEBUG Processing 429/831 atomic regions from SNP 128647 to 129247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,025 DEBUG Processing 278/713 atomic regions from SNP 83313 to 83913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,038 DEBUG Processing 270/687 atomic regions from SNP 80928 to 81528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,119 DEBUG Processing 284/727 atomic regions from SNP 85162 to 85762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,234 DEBUG Processing 279/713 atomic regions from SNP 83613 to 84213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,239 DEBUG Processing 430/831 atomic regions from SNP 128947 to 129547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,256 DEBUG Processing 271/687 atomic regions from SNP 81228 to 81828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,337 DEBUG Processing 285/727 atomic regions from SNP 85462 to 86062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,447 DEBUG Processing 280/713 atomic regions from SNP 83913 to 84513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,479 DEBUG Processing 431/831 atomic regions from SNP 129247 to 129847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,479 DEBUG Processing 272/687 atomic regions from SNP 81528 to 82128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,549 DEBUG Processing 286/727 atomic regions from SNP 85762 to 86362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,651 DEBUG Processing 281/713 atomic regions from SNP 84213 to 84813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,700 DEBUG Processing 273/687 atomic regions from SNP 81828 to 82428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,711 DEBUG Processing 432/831 atomic regions from SNP 129547 to 130147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,761 DEBUG Processing 287/727 atomic regions from SNP 86062 to 86662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:35,847 DEBUG Processing 282/713 atomic regions from SNP 84513 to 85113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:35,911 DEBUG Processing 274/687 atomic regions from SNP 82128 to 82728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:35,939 DEBUG Processing 433/831 atomic regions from SNP 129847 to 130447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,975 DEBUG Processing 288/727 atomic regions from SNP 86362 to 86962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,055 DEBUG Processing 283/713 atomic regions from SNP 84813 to 85413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,121 DEBUG Processing 275/687 atomic regions from SNP 82428 to 83028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,165 DEBUG Processing 434/831 atomic regions from SNP 130147 to 130747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,183 DEBUG Processing 289/727 atomic regions from SNP 86662 to 87262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,270 DEBUG Processing 284/713 atomic regions from SNP 85113 to 85713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,343 DEBUG Processing 276/687 atomic regions from SNP 82728 to 83328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,402 DEBUG Processing 290/727 atomic regions from SNP 86962 to 87562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,407 DEBUG Processing 435/831 atomic regions from SNP 130447 to 131047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,477 DEBUG Processing 285/713 atomic regions from SNP 85413 to 86013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,568 DEBUG Processing 277/687 atomic regions from SNP 83028 to 83628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,625 DEBUG Processing 291/727 atomic regions from SNP 87262 to 87862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,645 DEBUG Processing 436/831 atomic regions from SNP 130747 to 131347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,685 DEBUG Processing 286/713 atomic regions from SNP 85713 to 86313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:36,786 DEBUG Processing 278/687 atomic regions from SNP 83328 to 83928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:36,850 DEBUG Processing 292/727 atomic regions from SNP 87562 to 88162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:36,887 DEBUG Processing 437/831 atomic regions from SNP 131047 to 131647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,901 DEBUG Processing 287/713 atomic regions from SNP 86013 to 86613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,006 DEBUG Processing 279/687 atomic regions from SNP 83628 to 84228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,064 DEBUG Processing 293/727 atomic regions from SNP 87862 to 88462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,114 DEBUG Processing 288/713 atomic regions from SNP 86313 to 86913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,125 DEBUG Processing 438/831 atomic regions from SNP 131347 to 131947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,225 DEBUG Processing 280/687 atomic regions from SNP 83928 to 84528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,271 DEBUG Processing 294/727 atomic regions from SNP 88162 to 88762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,322 DEBUG Processing 289/713 atomic regions from SNP 86613 to 87213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,354 DEBUG Processing 439/831 atomic regions from SNP 131647 to 132247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,443 DEBUG Processing 281/687 atomic regions from SNP 84228 to 84828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,479 DEBUG Processing 295/727 atomic regions from SNP 88462 to 89062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,529 DEBUG Processing 290/713 atomic regions from SNP 86913 to 87513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,582 DEBUG Processing 440/831 atomic regions from SNP 131947 to 132547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,661 DEBUG Processing 282/687 atomic regions from SNP 84528 to 85128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,691 DEBUG Processing 296/727 atomic regions from SNP 88762 to 89362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,737 DEBUG Processing 291/713 atomic regions from SNP 87213 to 87813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:37,813 DEBUG Processing 441/831 atomic regions from SNP 132247 to 132847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,879 DEBUG Processing 283/687 atomic regions from SNP 84828 to 85428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:37,904 DEBUG Processing 297/727 atomic regions from SNP 89062 to 89662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:37,943 DEBUG Processing 292/713 atomic regions from SNP 87513 to 88113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,046 DEBUG Processing 442/831 atomic regions from SNP 132547 to 133147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,097 DEBUG Processing 284/687 atomic regions from SNP 85128 to 85728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,117 DEBUG Processing 298/727 atomic regions from SNP 89362 to 89962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,153 DEBUG Processing 293/713 atomic regions from SNP 87813 to 88413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,275 DEBUG Processing 443/831 atomic regions from SNP 132847 to 133447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,312 DEBUG Processing 285/687 atomic regions from SNP 85428 to 86028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,335 DEBUG Processing 299/727 atomic regions from SNP 89662 to 90262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,358 DEBUG Processing 294/713 atomic regions from SNP 88113 to 88713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,508 DEBUG Processing 444/831 atomic regions from SNP 133147 to 133747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,531 DEBUG Processing 286/687 atomic regions from SNP 85728 to 86328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,555 DEBUG Processing 300/727 atomic regions from SNP 89962 to 90562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,579 DEBUG Processing 295/713 atomic regions from SNP 88413 to 89013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,738 DEBUG Processing 445/831 atomic regions from SNP 133447 to 134047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,748 DEBUG Processing 287/687 atomic regions from SNP 86028 to 86628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,773 DEBUG Processing 301/727 atomic regions from SNP 90262 to 90862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,790 DEBUG Processing 296/713 atomic regions from SNP 88713 to 89313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:38,958 DEBUG Processing 288/687 atomic regions from SNP 86328 to 86928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:38,964 DEBUG Processing 446/831 atomic regions from SNP 133747 to 134347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,980 DEBUG Processing 302/727 atomic regions from SNP 90562 to 91162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:38,995 DEBUG Processing 297/713 atomic regions from SNP 89013 to 89613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,180 DEBUG Processing 289/687 atomic regions from SNP 86628 to 87228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,203 DEBUG Processing 303/727 atomic regions from SNP 90862 to 91462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,204 DEBUG Processing 447/831 atomic regions from SNP 134047 to 134647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,208 DEBUG Processing 298/713 atomic regions from SNP 89313 to 89913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,404 DEBUG Processing 290/687 atomic regions from SNP 86928 to 87528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,424 DEBUG Processing 299/713 atomic regions from SNP 89613 to 90213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,431 DEBUG Processing 304/727 atomic regions from SNP 91162 to 91762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,460 DEBUG Processing 448/831 atomic regions from SNP 134347 to 134947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,631 DEBUG Processing 291/687 atomic regions from SNP 87228 to 87828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,647 DEBUG Processing 300/713 atomic regions from SNP 89913 to 90513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,666 DEBUG Processing 305/727 atomic regions from SNP 91462 to 92062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:39,741 DEBUG Processing 449/831 atomic regions from SNP 134647 to 135247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,853 DEBUG Processing 292/687 atomic regions from SNP 87528 to 88128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:39,862 DEBUG Processing 301/713 atomic regions from SNP 90213 to 90813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:39,899 DEBUG Processing 306/727 atomic regions from SNP 91762 to 92362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,014 DEBUG Processing 450/831 atomic regions from SNP 134947 to 135547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,084 DEBUG Processing 302/713 atomic regions from SNP 90513 to 91113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,084 DEBUG Processing 293/687 atomic regions from SNP 87828 to 88428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,129 DEBUG Processing 307/727 atomic regions from SNP 92062 to 92662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,295 DEBUG Processing 451/831 atomic regions from SNP 135247 to 135847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,318 DEBUG Processing 303/713 atomic regions from SNP 90813 to 91413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,322 DEBUG Processing 294/687 atomic regions from SNP 88128 to 88728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,369 DEBUG Processing 308/727 atomic regions from SNP 92362 to 92962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,542 DEBUG Processing 304/713 atomic regions from SNP 91113 to 91713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,544 DEBUG Processing 452/831 atomic regions from SNP 135547 to 136147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,554 DEBUG Processing 295/687 atomic regions from SNP 88428 to 89028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,597 DEBUG Processing 309/727 atomic regions from SNP 92662 to 93262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:40,766 DEBUG Processing 305/713 atomic regions from SNP 91413 to 92013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:40,786 DEBUG Processing 296/687 atomic regions from SNP 88728 to 89328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:40,808 DEBUG Processing 453/831 atomic regions from SNP 135847 to 136447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,838 DEBUG Processing 310/727 atomic regions from SNP 92962 to 93562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,004 DEBUG Processing 306/713 atomic regions from SNP 91713 to 92313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,024 DEBUG Processing 297/687 atomic regions from SNP 89028 to 89628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,059 DEBUG Processing 454/831 atomic regions from SNP 136147 to 136747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,075 DEBUG Processing 311/727 atomic regions from SNP 93262 to 93862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,191 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:46:41,192 DEBUG chr14: Signal quantile: 0.995. signal threshold: 9. Best RMSEA: 0.026 2025-01-31 09:46:41,236 DEBUG Processing 307/713 atomic regions from SNP 92013 to 92613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,268 DEBUG Processing 298/687 atomic regions from SNP 89328 to 89928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,317 DEBUG Processing 312/727 atomic regions from SNP 93562 to 94162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,318 DEBUG Processing 455/831 atomic regions from SNP 136447 to 137047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,448 DEBUG Processing 308/713 atomic regions from SNP 92313 to 92913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,491 DEBUG Processing 299/687 atomic regions from SNP 89628 to 90228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,557 DEBUG Processing 313/727 atomic regions from SNP 93862 to 94462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,578 DEBUG Processing 456/831 atomic regions from SNP 136747 to 137347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,669 DEBUG Processing 309/713 atomic regions from SNP 92613 to 93213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,724 DEBUG Processing 300/687 atomic regions from SNP 89928 to 90528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:41,795 DEBUG Processing 314/727 atomic regions from SNP 94162 to 94762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:41,835 DEBUG Processing 457/831 atomic regions from SNP 137047 to 137647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,889 DEBUG Processing 310/713 atomic regions from SNP 92913 to 93513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:41,961 DEBUG Processing 301/687 atomic regions from SNP 90228 to 90828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,034 DEBUG Processing 315/727 atomic regions from SNP 94462 to 95062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,095 DEBUG Processing 458/831 atomic regions from SNP 137347 to 137947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,109 DEBUG Processing 311/713 atomic regions from SNP 93213 to 93813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,185 DEBUG Processing 302/687 atomic regions from SNP 90528 to 91128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,264 DEBUG Processing 316/727 atomic regions from SNP 94762 to 95362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,328 DEBUG Processing 312/713 atomic regions from SNP 93513 to 94113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,349 DEBUG Processing 459/831 atomic regions from SNP 137647 to 138247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,407 DEBUG Processing 303/687 atomic regions from SNP 90828 to 91428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,491 DEBUG Processing 317/727 atomic regions from SNP 95062 to 95662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,567 DEBUG Processing 313/713 atomic regions from SNP 93813 to 94413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,597 DEBUG Processing 460/831 atomic regions from SNP 137947 to 138547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,642 DEBUG Processing 304/687 atomic regions from SNP 91128 to 91728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,729 DEBUG Processing 318/727 atomic regions from SNP 95362 to 95962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:42,811 DEBUG Processing 314/713 atomic regions from SNP 94113 to 94713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:42,855 DEBUG Processing 461/831 atomic regions from SNP 138247 to 138847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,897 DEBUG Processing 305/687 atomic regions from SNP 91428 to 92028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:42,975 DEBUG Processing 319/727 atomic regions from SNP 95662 to 96262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,032 DEBUG Processing 315/713 atomic regions from SNP 94413 to 95013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,123 DEBUG Processing 462/831 atomic regions from SNP 138547 to 139147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,151 DEBUG Processing 306/687 atomic regions from SNP 91728 to 92328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,235 DEBUG Processing 320/727 atomic regions from SNP 95962 to 96562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,249 DEBUG Processing 316/713 atomic regions from SNP 94713 to 95313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,399 DEBUG Processing 307/687 atomic regions from SNP 92028 to 92628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,406 DEBUG Processing 463/831 atomic regions from SNP 138847 to 139447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,456 DEBUG Processing 317/713 atomic regions from SNP 95013 to 95613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,479 DEBUG Processing 321/727 atomic regions from SNP 96262 to 96862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,627 DEBUG Processing 308/687 atomic regions from SNP 92328 to 92928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,664 DEBUG Processing 464/831 atomic regions from SNP 139147 to 139747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,671 DEBUG Processing 318/713 atomic regions from SNP 95313 to 95913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,708 DEBUG chr14 total SNP count: 192389 2025-01-31 09:46:43,708 DEBUG chr14 length: 124902244 2025-01-31 09:46:43,708 DEBUG ----------------------------------------- 2025-01-31 09:46:43,708 INFO Processing SNPs in chr14 2025-01-31 09:46:43,729 DEBUG Processing 322/727 atomic regions from SNP 96562 to 97162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:43,853 DEBUG Processing 309/687 atomic regions from SNP 92628 to 93228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:43,890 DEBUG Processing 319/713 atomic regions from SNP 95613 to 96213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:43,913 DEBUG Processing 465/831 atomic regions from SNP 139447 to 140047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,968 DEBUG Processing 323/727 atomic regions from SNP 96862 to 97462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,013 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 12), (12, 119), (119, 192389)] 2025-01-31 09:46:44,081 DEBUG Processing 310/687 atomic regions from SNP 92928 to 93528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,098 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:44,101 DEBUG Processing 320/713 atomic regions from SNP 95913 to 96513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,112 DEBUG Segmenting atomic regions: 2025-01-31 09:46:44,178 DEBUG Processing 466/831 atomic regions from SNP 139747 to 140347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,196 DEBUG Processing 1/1 atomic regions from SNP 0 to 106 for chr14 (subchromosome 2 of 3). 2025-01-31 09:46:44,199 DEBUG Unique SNPs positions in subchromosome 2: 107 2025-01-31 09:46:44,200 DEBUG Subchromosome time: 0.10220051801297814, subchromosome SNPs: 107 2025-01-31 09:46:44,203 DEBUG Processing 324/727 atomic regions from SNP 97162 to 97762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,250 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:44,308 DEBUG Processing 311/687 atomic regions from SNP 93228 to 93828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,311 DEBUG Processing 321/713 atomic regions from SNP 96213 to 96813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,419 DEBUG Processing 467/831 atomic regions from SNP 140047 to 140647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,428 DEBUG Processing 325/727 atomic regions from SNP 97462 to 98062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,522 DEBUG Processing 322/713 atomic regions from SNP 96513 to 97113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,528 DEBUG Processing 312/687 atomic regions from SNP 93528 to 94128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,660 DEBUG Processing 326/727 atomic regions from SNP 97762 to 98362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,677 DEBUG Processing 468/831 atomic regions from SNP 140347 to 140947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,732 DEBUG Processing 323/713 atomic regions from SNP 96813 to 97413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,745 DEBUG Processing 313/687 atomic regions from SNP 93828 to 94428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:44,891 DEBUG Processing 327/727 atomic regions from SNP 98062 to 98662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:44,945 DEBUG Processing 324/713 atomic regions from SNP 97113 to 97713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:44,959 DEBUG Processing 469/831 atomic regions from SNP 140647 to 141247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,965 DEBUG Processing 314/687 atomic regions from SNP 94128 to 94728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,110 DEBUG Processing 328/727 atomic regions from SNP 98362 to 98962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,163 DEBUG Processing 325/713 atomic regions from SNP 97413 to 98013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,193 DEBUG Processing 315/687 atomic regions from SNP 94428 to 95028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,234 DEBUG Processing 470/831 atomic regions from SNP 140947 to 141547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,332 DEBUG Processing 329/727 atomic regions from SNP 98662 to 99262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,372 DEBUG Processing 326/713 atomic regions from SNP 97713 to 98313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,419 DEBUG Processing 316/687 atomic regions from SNP 94728 to 95328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,488 DEBUG Processing 471/831 atomic regions from SNP 141247 to 141847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,568 DEBUG Processing 327/713 atomic regions from SNP 98013 to 98613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,575 DEBUG Processing 330/727 atomic regions from SNP 98962 to 99562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,631 DEBUG Processing 317/687 atomic regions from SNP 95028 to 95628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,730 DEBUG Processing 472/831 atomic regions from SNP 141547 to 142147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,780 DEBUG Processing 328/713 atomic regions from SNP 98313 to 98913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:45,813 DEBUG Processing 331/727 atomic regions from SNP 99262 to 99862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:45,841 DEBUG Processing 318/687 atomic regions from SNP 95328 to 95928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:45,970 DEBUG Processing 473/831 atomic regions from SNP 141847 to 142447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,999 DEBUG Processing 329/713 atomic regions from SNP 98613 to 99213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,045 DEBUG Processing 332/727 atomic regions from SNP 99562 to 100162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,062 DEBUG Processing 319/687 atomic regions from SNP 95628 to 96228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,203 DEBUG Processing 474/831 atomic regions from SNP 142147 to 142747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,204 DEBUG Processing 330/713 atomic regions from SNP 98913 to 99513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,262 DEBUG Processing 333/727 atomic regions from SNP 99862 to 100462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,281 DEBUG Processing 320/687 atomic regions from SNP 95928 to 96528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,415 DEBUG Processing 331/713 atomic regions from SNP 99213 to 99813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,446 DEBUG Processing 475/831 atomic regions from SNP 142447 to 143047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,486 DEBUG Processing 334/727 atomic regions from SNP 100162 to 100762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,495 DEBUG Processing 321/687 atomic regions from SNP 96228 to 96828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,624 DEBUG Processing 332/713 atomic regions from SNP 99513 to 100113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,689 DEBUG Processing 476/831 atomic regions from SNP 142747 to 143347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,710 DEBUG Processing 322/687 atomic regions from SNP 96528 to 97128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,738 DEBUG Processing 335/727 atomic regions from SNP 100462 to 101062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:46,839 DEBUG Processing 333/713 atomic regions from SNP 99813 to 100413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:46,928 DEBUG Processing 323/687 atomic regions from SNP 96828 to 97428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:46,952 DEBUG Processing 477/831 atomic regions from SNP 143047 to 143647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,986 DEBUG Processing 336/727 atomic regions from SNP 100762 to 101362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,051 DEBUG Processing 334/713 atomic regions from SNP 100113 to 100713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,150 DEBUG Processing 324/687 atomic regions from SNP 97128 to 97728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,216 DEBUG Processing 478/831 atomic regions from SNP 143347 to 143947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,226 DEBUG Processing 337/727 atomic regions from SNP 101062 to 101662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,254 DEBUG Processing 335/713 atomic regions from SNP 100413 to 101013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,377 DEBUG Processing 325/687 atomic regions from SNP 97428 to 98028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,455 DEBUG Processing 338/727 atomic regions from SNP 101362 to 101962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,459 DEBUG Processing 336/713 atomic regions from SNP 100713 to 101313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,461 DEBUG Processing 479/831 atomic regions from SNP 143647 to 144247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,599 DEBUG Processing 326/687 atomic regions from SNP 97728 to 98328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,672 DEBUG Processing 337/713 atomic regions from SNP 101013 to 101613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,683 DEBUG Processing 339/727 atomic regions from SNP 101662 to 102262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,709 DEBUG Processing 480/831 atomic regions from SNP 143947 to 144547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,820 DEBUG Processing 327/687 atomic regions from SNP 98028 to 98628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:47,899 DEBUG Processing 338/713 atomic regions from SNP 101313 to 101913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:47,913 DEBUG Processing 340/727 atomic regions from SNP 101962 to 102562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:47,952 DEBUG Processing 481/831 atomic regions from SNP 144247 to 144847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,031 DEBUG Processing 328/687 atomic regions from SNP 98328 to 98928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,109 DEBUG Processing 339/713 atomic regions from SNP 101613 to 102213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,145 DEBUG Processing 341/727 atomic regions from SNP 102262 to 102862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,212 DEBUG Processing 482/831 atomic regions from SNP 144547 to 145147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,247 DEBUG Processing 329/687 atomic regions from SNP 98628 to 99228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,312 DEBUG Processing 340/713 atomic regions from SNP 101913 to 102513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,396 DEBUG Processing 342/727 atomic regions from SNP 102562 to 103162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,470 DEBUG Processing 330/687 atomic regions from SNP 98928 to 99528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,474 DEBUG Processing 483/831 atomic regions from SNP 144847 to 145447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,524 DEBUG Processing 341/713 atomic regions from SNP 102213 to 102813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,632 DEBUG Processing 343/727 atomic regions from SNP 102862 to 103462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,687 DEBUG Processing 331/687 atomic regions from SNP 99228 to 99828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,738 DEBUG Processing 342/713 atomic regions from SNP 102513 to 103113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:48,747 DEBUG Processing 484/831 atomic regions from SNP 145147 to 145747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,855 DEBUG Processing 344/727 atomic regions from SNP 103162 to 103762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:48,906 DEBUG Processing 332/687 atomic regions from SNP 99528 to 100128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:48,951 DEBUG Processing 343/713 atomic regions from SNP 102813 to 103413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,006 DEBUG Processing 485/831 atomic regions from SNP 145447 to 146047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,084 DEBUG Processing 345/727 atomic regions from SNP 103462 to 104062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,134 DEBUG Processing 333/687 atomic regions from SNP 99828 to 100428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,164 DEBUG Processing 344/713 atomic regions from SNP 103113 to 103713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,252 DEBUG Processing 486/831 atomic regions from SNP 145747 to 146347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,315 DEBUG Processing 346/727 atomic regions from SNP 103762 to 104362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,364 DEBUG Processing 334/687 atomic regions from SNP 100128 to 100728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,385 DEBUG Processing 345/713 atomic regions from SNP 103413 to 104013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,502 DEBUG Processing 487/831 atomic regions from SNP 146047 to 146647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,546 DEBUG Processing 347/727 atomic regions from SNP 104062 to 104662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,587 DEBUG Processing 335/687 atomic regions from SNP 100428 to 101028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,603 DEBUG Processing 346/713 atomic regions from SNP 103713 to 104313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,746 DEBUG Processing 488/831 atomic regions from SNP 146347 to 146947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,772 DEBUG Processing 348/727 atomic regions from SNP 104362 to 104962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:49,802 DEBUG Processing 336/687 atomic regions from SNP 100728 to 101328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:49,811 DEBUG Processing 347/713 atomic regions from SNP 104013 to 104613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:49,992 DEBUG Processing 489/831 atomic regions from SNP 146647 to 147247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,997 DEBUG Processing 349/727 atomic regions from SNP 104662 to 105262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,015 DEBUG Processing 337/687 atomic regions from SNP 101028 to 101628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,016 DEBUG Processing 348/713 atomic regions from SNP 104313 to 104913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,227 DEBUG Processing 349/713 atomic regions from SNP 104613 to 105213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,229 DEBUG Processing 350/727 atomic regions from SNP 104962 to 105562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,234 DEBUG Processing 338/687 atomic regions from SNP 101328 to 101928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,241 DEBUG Processing 490/831 atomic regions from SNP 146947 to 147547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,447 DEBUG Processing 350/713 atomic regions from SNP 104913 to 105513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,464 DEBUG Processing 339/687 atomic regions from SNP 101628 to 102228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,470 DEBUG Processing 351/727 atomic regions from SNP 105262 to 105862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,496 DEBUG Processing 491/831 atomic regions from SNP 147247 to 147847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,660 DEBUG Processing 351/713 atomic regions from SNP 105213 to 105813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,685 DEBUG Processing 340/687 atomic regions from SNP 101928 to 102528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,704 DEBUG Processing 352/727 atomic regions from SNP 105562 to 106162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:50,746 DEBUG Processing 492/831 atomic regions from SNP 147547 to 148147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,869 DEBUG Processing 352/713 atomic regions from SNP 105513 to 106113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:50,905 DEBUG Processing 341/687 atomic regions from SNP 102228 to 102828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:50,943 DEBUG Processing 353/727 atomic regions from SNP 105862 to 106462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,000 DEBUG Processing 493/831 atomic regions from SNP 147847 to 148447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,083 DEBUG Processing 353/713 atomic regions from SNP 105813 to 106413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,123 DEBUG Processing 342/687 atomic regions from SNP 102528 to 103128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,176 DEBUG Processing 354/727 atomic regions from SNP 106162 to 106762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,255 DEBUG Processing 494/831 atomic regions from SNP 148147 to 148747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,294 DEBUG Processing 354/713 atomic regions from SNP 106113 to 106713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,341 DEBUG Processing 343/687 atomic regions from SNP 102828 to 103428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,415 DEBUG Processing 355/727 atomic regions from SNP 106462 to 107062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,512 DEBUG Processing 355/713 atomic regions from SNP 106413 to 107013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,516 DEBUG Processing 495/831 atomic regions from SNP 148447 to 149047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,565 DEBUG Processing 344/687 atomic regions from SNP 103128 to 103728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,653 DEBUG Processing 356/727 atomic regions from SNP 106762 to 107362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,727 DEBUG Processing 356/713 atomic regions from SNP 106713 to 107313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:51,761 DEBUG Processing 496/831 atomic regions from SNP 148747 to 149347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,787 DEBUG Processing 345/687 atomic regions from SNP 103428 to 104028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:51,889 DEBUG Processing 357/727 atomic regions from SNP 107062 to 107662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:51,934 DEBUG Processing 357/713 atomic regions from SNP 107013 to 107613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,007 DEBUG Processing 346/687 atomic regions from SNP 103728 to 104328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,016 DEBUG Processing 497/831 atomic regions from SNP 149047 to 149647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,127 DEBUG Processing 358/727 atomic regions from SNP 107362 to 107962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,152 DEBUG Processing 358/713 atomic regions from SNP 107313 to 107913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,236 DEBUG Processing 347/687 atomic regions from SNP 104028 to 104628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,275 DEBUG Processing 498/831 atomic regions from SNP 149347 to 149947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,366 DEBUG Processing 359/727 atomic regions from SNP 107662 to 108262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,372 DEBUG Processing 359/713 atomic regions from SNP 107613 to 108213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,466 DEBUG Processing 348/687 atomic regions from SNP 104328 to 104928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,526 DEBUG Processing 499/831 atomic regions from SNP 149647 to 150247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,595 DEBUG Processing 360/713 atomic regions from SNP 107913 to 108513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,610 DEBUG Processing 360/727 atomic regions from SNP 107962 to 108562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,700 DEBUG Processing 349/687 atomic regions from SNP 104628 to 105228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:52,783 DEBUG Processing 500/831 atomic regions from SNP 149947 to 150547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,815 DEBUG Processing 361/713 atomic regions from SNP 108213 to 108813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:52,851 DEBUG Processing 361/727 atomic regions from SNP 108262 to 108862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:52,932 DEBUG Processing 350/687 atomic regions from SNP 104928 to 105528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,033 DEBUG Processing 501/831 atomic regions from SNP 150247 to 150847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,049 DEBUG Processing 362/713 atomic regions from SNP 108513 to 109113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,088 DEBUG Processing 362/727 atomic regions from SNP 108562 to 109162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,158 DEBUG Processing 351/687 atomic regions from SNP 105228 to 105828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,275 DEBUG Processing 502/831 atomic regions from SNP 150547 to 151147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,278 DEBUG Processing 363/713 atomic regions from SNP 108813 to 109413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,321 DEBUG Processing 363/727 atomic regions from SNP 108862 to 109462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,372 DEBUG Processing 352/687 atomic regions from SNP 105528 to 106128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,504 DEBUG Processing 364/713 atomic regions from SNP 109113 to 109713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,526 DEBUG Processing 503/831 atomic regions from SNP 150847 to 151447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,555 DEBUG Processing 364/727 atomic regions from SNP 109162 to 109762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,595 DEBUG Processing 353/687 atomic regions from SNP 105828 to 106428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,747 DEBUG Processing 365/713 atomic regions from SNP 109413 to 110013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:53,775 DEBUG Processing 504/831 atomic regions from SNP 151147 to 151747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,783 DEBUG Processing 365/727 atomic regions from SNP 109462 to 110062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:53,821 DEBUG Processing 354/687 atomic regions from SNP 106128 to 106728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:53,984 DEBUG Processing 366/713 atomic regions from SNP 109713 to 110313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,014 DEBUG Processing 366/727 atomic regions from SNP 109762 to 110362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,020 DEBUG Processing 505/831 atomic regions from SNP 151447 to 152047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,044 DEBUG Processing 355/687 atomic regions from SNP 106428 to 107028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,242 DEBUG Processing 367/713 atomic regions from SNP 110013 to 110613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,251 DEBUG Processing 367/727 atomic regions from SNP 110062 to 110662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,271 DEBUG Processing 506/831 atomic regions from SNP 151747 to 152347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,275 DEBUG Processing 356/687 atomic regions from SNP 106728 to 107328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,484 DEBUG Processing 368/727 atomic regions from SNP 110362 to 110962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,498 DEBUG Processing 368/713 atomic regions from SNP 110313 to 110913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,507 DEBUG Processing 357/687 atomic regions from SNP 107028 to 107628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,524 DEBUG Processing 507/831 atomic regions from SNP 152047 to 152647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,714 DEBUG Processing 369/727 atomic regions from SNP 110662 to 111262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,729 DEBUG Processing 358/687 atomic regions from SNP 107328 to 107928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,745 DEBUG Processing 369/713 atomic regions from SNP 110613 to 111213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:54,773 DEBUG Processing 508/831 atomic regions from SNP 152347 to 152947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,939 DEBUG Processing 370/727 atomic regions from SNP 110962 to 111562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:54,943 DEBUG Processing 359/687 atomic regions from SNP 107628 to 108228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:54,963 DEBUG Processing 370/713 atomic regions from SNP 110913 to 111513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,015 DEBUG Processing 509/831 atomic regions from SNP 152647 to 153247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,156 DEBUG Processing 360/687 atomic regions from SNP 107928 to 108528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,158 DEBUG Processing 371/727 atomic regions from SNP 111262 to 111862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,181 DEBUG Processing 371/713 atomic regions from SNP 111213 to 111813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,257 DEBUG Processing 510/831 atomic regions from SNP 152947 to 153547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,379 DEBUG Processing 361/687 atomic regions from SNP 108228 to 108828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,386 DEBUG Processing 372/727 atomic regions from SNP 111562 to 112162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,428 DEBUG Processing 372/713 atomic regions from SNP 111513 to 112113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,490 DEBUG Processing 511/831 atomic regions from SNP 153247 to 153847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,610 DEBUG Processing 362/687 atomic regions from SNP 108528 to 109128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,621 DEBUG Processing 373/727 atomic regions from SNP 111862 to 112462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,672 DEBUG Processing 373/713 atomic regions from SNP 111813 to 112413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,728 DEBUG Processing 512/831 atomic regions from SNP 153547 to 154147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,830 DEBUG Processing 363/687 atomic regions from SNP 108828 to 109428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:55,849 DEBUG Processing 374/727 atomic regions from SNP 112162 to 112762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:55,888 DEBUG Processing 374/713 atomic regions from SNP 112113 to 112713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:55,968 DEBUG Processing 513/831 atomic regions from SNP 153847 to 154447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,044 DEBUG Processing 364/687 atomic regions from SNP 109128 to 109728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,072 DEBUG Processing 375/727 atomic regions from SNP 112462 to 113062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,097 DEBUG Processing 375/713 atomic regions from SNP 112413 to 113013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,211 DEBUG Processing 514/831 atomic regions from SNP 154147 to 154747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,261 DEBUG Processing 365/687 atomic regions from SNP 109428 to 110028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,297 DEBUG Processing 376/727 atomic regions from SNP 112762 to 113362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,302 DEBUG Processing 376/713 atomic regions from SNP 112713 to 113313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,455 DEBUG Processing 515/831 atomic regions from SNP 154447 to 155047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,487 DEBUG Processing 366/687 atomic regions from SNP 109728 to 110328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,520 DEBUG Processing 377/713 atomic regions from SNP 113013 to 113613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,532 DEBUG Processing 377/727 atomic regions from SNP 113062 to 113662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,700 DEBUG Processing 516/831 atomic regions from SNP 154747 to 155347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,712 DEBUG Processing 367/687 atomic regions from SNP 110028 to 110628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,759 DEBUG Processing 378/713 atomic regions from SNP 113313 to 113913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:56,766 DEBUG Processing 378/727 atomic regions from SNP 113362 to 113962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:56,936 DEBUG Processing 368/687 atomic regions from SNP 110328 to 110928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:56,938 DEBUG Processing 517/831 atomic regions from SNP 155047 to 155647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,986 DEBUG Processing 379/713 atomic regions from SNP 113613 to 114213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,005 DEBUG Processing 379/727 atomic regions from SNP 113662 to 114262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,157 DEBUG Processing 369/687 atomic regions from SNP 110628 to 111228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,175 DEBUG Processing 518/831 atomic regions from SNP 155347 to 155947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,201 DEBUG Processing 380/713 atomic regions from SNP 113913 to 114513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,238 DEBUG Processing 380/727 atomic regions from SNP 113962 to 114562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,384 DEBUG Processing 370/687 atomic regions from SNP 110928 to 111528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,419 DEBUG Processing 519/831 atomic regions from SNP 155647 to 156247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,421 DEBUG Processing 381/713 atomic regions from SNP 114213 to 114813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,471 DEBUG Processing 381/727 atomic regions from SNP 114262 to 114862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,610 DEBUG Processing 371/687 atomic regions from SNP 111228 to 111828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,641 DEBUG Processing 382/713 atomic regions from SNP 114513 to 115113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,684 DEBUG Processing 520/831 atomic regions from SNP 155947 to 156547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,705 DEBUG Processing 382/727 atomic regions from SNP 114562 to 115162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:57,834 DEBUG Processing 372/687 atomic regions from SNP 111528 to 112128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:57,862 DEBUG Processing 383/713 atomic regions from SNP 114813 to 115413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:57,942 DEBUG Processing 521/831 atomic regions from SNP 156247 to 156847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,944 DEBUG Processing 383/727 atomic regions from SNP 114862 to 115462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,056 DEBUG Processing 373/687 atomic regions from SNP 111828 to 112428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,075 DEBUG Processing 384/713 atomic regions from SNP 115113 to 115713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,181 DEBUG Processing 384/727 atomic regions from SNP 115162 to 115762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,194 DEBUG Processing 522/831 atomic regions from SNP 156547 to 157147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,281 DEBUG Processing 374/687 atomic regions from SNP 112128 to 112728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,290 DEBUG Processing 385/713 atomic regions from SNP 115413 to 116013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,411 DEBUG Processing 385/727 atomic regions from SNP 115462 to 116062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,443 DEBUG Processing 523/831 atomic regions from SNP 156847 to 157447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,513 DEBUG Processing 386/713 atomic regions from SNP 115713 to 116313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,513 DEBUG Processing 375/687 atomic regions from SNP 112428 to 113028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,633 DEBUG Processing 386/727 atomic regions from SNP 115762 to 116362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,687 DEBUG Processing 524/831 atomic regions from SNP 157147 to 157747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,735 DEBUG Processing 387/713 atomic regions from SNP 116013 to 116613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,744 DEBUG Processing 376/687 atomic regions from SNP 112728 to 113328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:58,904 DEBUG Processing 387/727 atomic regions from SNP 116062 to 116662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:58,928 DEBUG Processing 525/831 atomic regions from SNP 157447 to 158047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,948 DEBUG Processing 388/713 atomic regions from SNP 116313 to 116913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:58,969 DEBUG Processing 377/687 atomic regions from SNP 113028 to 113628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,136 DEBUG Processing 388/727 atomic regions from SNP 116362 to 116962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,171 DEBUG Processing 389/713 atomic regions from SNP 116613 to 117213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,180 DEBUG Processing 526/831 atomic regions from SNP 157747 to 158347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,195 DEBUG Processing 378/687 atomic regions from SNP 113328 to 113928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,366 DEBUG Processing 389/727 atomic regions from SNP 116662 to 117262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,398 DEBUG Processing 390/713 atomic regions from SNP 116913 to 117513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,430 DEBUG Processing 379/687 atomic regions from SNP 113628 to 114228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,439 DEBUG Processing 527/831 atomic regions from SNP 158047 to 158647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,591 DEBUG Processing 390/727 atomic regions from SNP 116962 to 117562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,638 DEBUG Processing 391/713 atomic regions from SNP 117213 to 117813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,672 DEBUG Processing 380/687 atomic regions from SNP 113928 to 114528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,701 DEBUG Processing 528/831 atomic regions from SNP 158347 to 158947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,807 DEBUG Processing 391/727 atomic regions from SNP 117262 to 117862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:46:59,871 DEBUG Processing 392/713 atomic regions from SNP 117513 to 118113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:46:59,904 DEBUG Processing 381/687 atomic regions from SNP 114228 to 114828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:46:59,948 DEBUG Processing 529/831 atomic regions from SNP 158647 to 159247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,032 DEBUG Processing 392/727 atomic regions from SNP 117562 to 118162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,083 DEBUG Processing 393/713 atomic regions from SNP 117813 to 118413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,126 DEBUG Processing 382/687 atomic regions from SNP 114528 to 115128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,189 DEBUG Processing 530/831 atomic regions from SNP 158947 to 159547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,262 DEBUG Processing 393/727 atomic regions from SNP 117862 to 118462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,301 DEBUG Processing 394/713 atomic regions from SNP 118113 to 118713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,353 DEBUG Processing 383/687 atomic regions from SNP 114828 to 115428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,431 DEBUG Processing 531/831 atomic regions from SNP 159247 to 159847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,482 DEBUG Processing 394/727 atomic regions from SNP 118162 to 118762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,517 DEBUG Processing 395/713 atomic regions from SNP 118413 to 119013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,584 DEBUG Processing 384/687 atomic regions from SNP 115128 to 115728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,682 DEBUG Processing 532/831 atomic regions from SNP 159547 to 160147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,714 DEBUG Processing 395/727 atomic regions from SNP 118462 to 119062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:00,734 DEBUG Processing 396/713 atomic regions from SNP 118713 to 119313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,812 DEBUG Processing 385/687 atomic regions from SNP 115428 to 116028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:00,939 DEBUG Processing 533/831 atomic regions from SNP 159847 to 160447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,956 DEBUG Processing 397/713 atomic regions from SNP 119013 to 119613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:00,957 DEBUG Processing 396/727 atomic regions from SNP 118762 to 119362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,033 DEBUG Processing 386/687 atomic regions from SNP 115728 to 116328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,189 DEBUG Processing 398/713 atomic regions from SNP 119313 to 119913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,195 DEBUG Processing 534/831 atomic regions from SNP 160147 to 160747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,200 DEBUG Processing 397/727 atomic regions from SNP 119062 to 119662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,258 DEBUG Processing 387/687 atomic regions from SNP 116028 to 116628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,407 DEBUG Processing 399/713 atomic regions from SNP 119613 to 120213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,440 DEBUG Processing 398/727 atomic regions from SNP 119362 to 119962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,454 DEBUG Processing 535/831 atomic regions from SNP 160447 to 161047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,491 DEBUG Processing 388/687 atomic regions from SNP 116328 to 116928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,621 DEBUG Processing 400/713 atomic regions from SNP 119913 to 120513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,668 DEBUG Processing 399/727 atomic regions from SNP 119662 to 120262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,698 DEBUG Processing 536/831 atomic regions from SNP 160747 to 161347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,721 DEBUG Processing 389/687 atomic regions from SNP 116628 to 117228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,836 DEBUG Processing 401/713 atomic regions from SNP 120213 to 120813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:01,905 DEBUG Processing 400/727 atomic regions from SNP 119962 to 120562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:01,941 DEBUG Processing 390/687 atomic regions from SNP 116928 to 117528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:01,952 DEBUG Processing 537/831 atomic regions from SNP 161047 to 161647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,048 DEBUG Processing 402/713 atomic regions from SNP 120513 to 121113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,150 DEBUG Processing 401/727 atomic regions from SNP 120262 to 120862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,171 DEBUG Processing 391/687 atomic regions from SNP 117228 to 117828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,212 DEBUG Processing 538/831 atomic regions from SNP 161347 to 161947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,257 DEBUG Processing 403/713 atomic regions from SNP 120813 to 121413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,387 DEBUG Processing 402/727 atomic regions from SNP 120562 to 121162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,407 DEBUG Processing 392/687 atomic regions from SNP 117528 to 118128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,471 DEBUG Processing 539/831 atomic regions from SNP 161647 to 162247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,472 DEBUG Processing 404/713 atomic regions from SNP 121113 to 121713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,614 DEBUG Processing 403/727 atomic regions from SNP 120862 to 121462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,635 DEBUG Processing 393/687 atomic regions from SNP 117828 to 118428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,693 DEBUG Processing 405/713 atomic regions from SNP 121413 to 122013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,731 DEBUG Processing 540/831 atomic regions from SNP 161947 to 162547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,840 DEBUG Processing 404/727 atomic regions from SNP 121162 to 121762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:02,849 DEBUG Processing 394/687 atomic regions from SNP 118128 to 118728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:02,900 DEBUG Processing 406/713 atomic regions from SNP 121713 to 122313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:02,976 DEBUG Processing 541/831 atomic regions from SNP 162247 to 162847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,069 DEBUG Processing 395/687 atomic regions from SNP 118428 to 119028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,074 DEBUG Processing 405/727 atomic regions from SNP 121462 to 122062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,108 DEBUG Processing 407/713 atomic regions from SNP 122013 to 122613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,218 DEBUG Processing 542/831 atomic regions from SNP 162547 to 163147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,292 DEBUG Processing 396/687 atomic regions from SNP 118728 to 119328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,306 DEBUG Processing 406/727 atomic regions from SNP 121762 to 122362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,323 DEBUG Processing 408/713 atomic regions from SNP 122313 to 122913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,465 DEBUG Processing 543/831 atomic regions from SNP 162847 to 163447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,514 DEBUG Processing 397/687 atomic regions from SNP 119028 to 119628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,532 DEBUG Processing 407/727 atomic regions from SNP 122062 to 122662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,535 DEBUG Processing 409/713 atomic regions from SNP 122613 to 123213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,715 DEBUG Processing 544/831 atomic regions from SNP 163147 to 163747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,736 DEBUG Processing 398/687 atomic regions from SNP 119328 to 119928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,749 DEBUG Processing 410/713 atomic regions from SNP 122913 to 123513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,767 DEBUG Processing 408/727 atomic regions from SNP 122362 to 122962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:03,962 DEBUG Processing 399/687 atomic regions from SNP 119628 to 120228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:03,966 DEBUG Processing 411/713 atomic regions from SNP 123213 to 123813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:03,968 DEBUG Processing 545/831 atomic regions from SNP 163447 to 164047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,005 DEBUG Processing 409/727 atomic regions from SNP 122662 to 123262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,184 DEBUG Processing 412/713 atomic regions from SNP 123513 to 124113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,191 DEBUG Processing 400/687 atomic regions from SNP 119928 to 120528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,218 DEBUG Processing 546/831 atomic regions from SNP 163747 to 164347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,241 DEBUG Processing 410/727 atomic regions from SNP 122962 to 123562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,403 DEBUG Processing 413/713 atomic regions from SNP 123813 to 124413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,421 DEBUG Processing 401/687 atomic regions from SNP 120228 to 120828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,457 DEBUG Processing 547/831 atomic regions from SNP 164047 to 164647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,474 DEBUG Processing 411/727 atomic regions from SNP 123262 to 123862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,614 DEBUG Processing 414/713 atomic regions from SNP 124113 to 124713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,643 DEBUG Processing 402/687 atomic regions from SNP 120528 to 121128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,700 DEBUG Processing 548/831 atomic regions from SNP 164347 to 164947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,723 DEBUG Processing 412/727 atomic regions from SNP 123562 to 124162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:04,816 DEBUG Processing 415/713 atomic regions from SNP 124413 to 125013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:04,851 DEBUG Processing 403/687 atomic regions from SNP 120828 to 121428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:04,944 DEBUG Processing 549/831 atomic regions from SNP 164647 to 165247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,968 DEBUG Processing 413/727 atomic regions from SNP 123862 to 124462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,027 DEBUG Processing 416/713 atomic regions from SNP 124713 to 125313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,061 DEBUG Processing 404/687 atomic regions from SNP 121128 to 121728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,185 DEBUG Processing 550/831 atomic regions from SNP 164947 to 165547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,198 DEBUG Processing 414/727 atomic regions from SNP 124162 to 124762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,247 DEBUG Processing 417/713 atomic regions from SNP 125013 to 125613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,284 DEBUG Processing 405/687 atomic regions from SNP 121428 to 122028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,426 DEBUG Processing 415/727 atomic regions from SNP 124462 to 125062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,426 DEBUG Processing 551/831 atomic regions from SNP 165247 to 165847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,465 DEBUG Processing 418/713 atomic regions from SNP 125313 to 125913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,506 DEBUG Processing 406/687 atomic regions from SNP 121728 to 122328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,676 DEBUG Processing 552/831 atomic regions from SNP 165547 to 166147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,681 DEBUG Processing 416/727 atomic regions from SNP 124762 to 125362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,690 DEBUG Processing 419/713 atomic regions from SNP 125613 to 126213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,726 DEBUG Processing 407/687 atomic regions from SNP 122028 to 122628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:05,905 DEBUG Processing 420/713 atomic regions from SNP 125913 to 126513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:05,931 DEBUG Processing 417/727 atomic regions from SNP 125062 to 125662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:05,934 DEBUG Processing 553/831 atomic regions from SNP 165847 to 166447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,947 DEBUG Processing 408/687 atomic regions from SNP 122328 to 122928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,117 DEBUG Processing 421/713 atomic regions from SNP 126213 to 126813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,158 DEBUG Processing 418/727 atomic regions from SNP 125362 to 125962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,166 DEBUG Processing 409/687 atomic regions from SNP 122628 to 123228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,173 DEBUG Processing 554/831 atomic regions from SNP 166147 to 166747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,327 DEBUG Processing 422/713 atomic regions from SNP 126513 to 127113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,385 DEBUG Processing 419/727 atomic regions from SNP 125662 to 126262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,386 DEBUG Processing 410/687 atomic regions from SNP 122928 to 123528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,412 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:47:06,416 DEBUG Processing 555/831 atomic regions from SNP 166447 to 167047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,533 DEBUG Processing 423/713 atomic regions from SNP 126813 to 127413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,613 DEBUG Processing 411/687 atomic regions from SNP 123228 to 123828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,623 DEBUG Processing 420/727 atomic regions from SNP 125962 to 126562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,665 DEBUG Processing 556/831 atomic regions from SNP 166747 to 167347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,738 DEBUG Processing 424/713 atomic regions from SNP 127113 to 127713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:06,837 DEBUG Processing 412/687 atomic regions from SNP 123528 to 124128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:06,857 DEBUG Processing 421/727 atomic regions from SNP 126262 to 126862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:06,916 DEBUG Processing 557/831 atomic regions from SNP 167047 to 167647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,953 DEBUG Processing 425/713 atomic regions from SNP 127413 to 128013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,049 DEBUG Processing 413/687 atomic regions from SNP 123828 to 124428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,073 DEBUG Processing 422/727 atomic regions from SNP 126562 to 127162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,155 DEBUG Processing 558/831 atomic regions from SNP 167347 to 167947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,165 DEBUG Processing 426/713 atomic regions from SNP 127713 to 128313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,262 DEBUG Processing 414/687 atomic regions from SNP 124128 to 124728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,310 DEBUG Processing 423/727 atomic regions from SNP 126862 to 127462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,371 DEBUG Processing 427/713 atomic regions from SNP 128013 to 128613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,387 DEBUG Processing 559/831 atomic regions from SNP 167647 to 168247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,494 DEBUG Processing 415/687 atomic regions from SNP 124428 to 125028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,512 DEBUG Segmenting atomic regions: 2025-01-31 09:47:07,550 DEBUG Processing 424/727 atomic regions from SNP 127162 to 127762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,584 DEBUG Processing 428/713 atomic regions from SNP 128313 to 128913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,595 DEBUG Processing 1/639 atomic regions from SNP 0 to 601 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:07,621 DEBUG Processing 560/831 atomic regions from SNP 167947 to 168547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,709 DEBUG Processing 416/687 atomic regions from SNP 124728 to 125328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:07,781 DEBUG Processing 425/727 atomic regions from SNP 127462 to 128062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:07,793 DEBUG Processing 429/713 atomic regions from SNP 128613 to 129213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:07,813 DEBUG Processing 2/639 atomic regions from SNP 301 to 902 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:07,861 DEBUG Processing 561/831 atomic regions from SNP 168247 to 168847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,931 DEBUG Processing 417/687 atomic regions from SNP 125028 to 125628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,010 DEBUG Processing 430/713 atomic regions from SNP 128913 to 129513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,031 DEBUG Processing 3/639 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:08,037 DEBUG Processing 426/727 atomic regions from SNP 127762 to 128362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,100 DEBUG Processing 562/831 atomic regions from SNP 168547 to 169147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,151 DEBUG Processing 418/687 atomic regions from SNP 125328 to 125928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,223 DEBUG Processing 431/713 atomic regions from SNP 129213 to 129813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,246 DEBUG Processing 4/639 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:08,288 DEBUG Processing 427/727 atomic regions from SNP 128062 to 128662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,334 DEBUG Processing 563/831 atomic regions from SNP 168847 to 169447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,367 DEBUG Processing 419/687 atomic regions from SNP 125628 to 126228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,440 DEBUG Processing 432/713 atomic regions from SNP 129513 to 130113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,465 DEBUG Processing 5/639 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:08,530 DEBUG Processing 428/727 atomic regions from SNP 128362 to 128962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,570 DEBUG Processing 564/831 atomic regions from SNP 169147 to 169747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,579 DEBUG Processing 420/687 atomic regions from SNP 125928 to 126528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,654 DEBUG Processing 433/713 atomic regions from SNP 129813 to 130413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,684 DEBUG Processing 6/639 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:08,775 DEBUG Processing 429/727 atomic regions from SNP 128662 to 129262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:08,810 DEBUG Processing 565/831 atomic regions from SNP 169447 to 170047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,810 DEBUG Processing 421/687 atomic regions from SNP 126228 to 126828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:08,861 DEBUG Processing 434/713 atomic regions from SNP 130113 to 130713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:08,896 DEBUG Processing 7/639 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:09,004 DEBUG Processing 430/727 atomic regions from SNP 128962 to 129562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,052 DEBUG Processing 422/687 atomic regions from SNP 126528 to 127128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,059 DEBUG Processing 566/831 atomic regions from SNP 169747 to 170347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,073 DEBUG Processing 435/713 atomic regions from SNP 130413 to 131013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,111 DEBUG Processing 8/639 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:09,222 DEBUG Processing 431/727 atomic regions from SNP 129262 to 129862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,286 DEBUG Processing 423/687 atomic regions from SNP 126828 to 127428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,291 DEBUG Processing 436/713 atomic regions from SNP 130713 to 131313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,304 DEBUG Processing 567/831 atomic regions from SNP 170047 to 170647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,332 DEBUG Processing 9/639 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:09,450 DEBUG Processing 432/727 atomic regions from SNP 129562 to 130162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,510 DEBUG Processing 437/713 atomic regions from SNP 131013 to 131613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,529 DEBUG Processing 424/687 atomic regions from SNP 127128 to 127728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,555 DEBUG Processing 568/831 atomic regions from SNP 170347 to 170947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,556 DEBUG Processing 10/639 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:09,683 DEBUG Processing 433/727 atomic regions from SNP 129862 to 130462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,725 DEBUG Processing 438/713 atomic regions from SNP 131313 to 131913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,751 DEBUG Processing 425/687 atomic regions from SNP 127428 to 128028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:09,780 DEBUG Processing 11/639 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:09,810 DEBUG Processing 569/831 atomic regions from SNP 170647 to 171247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,915 DEBUG Processing 434/727 atomic regions from SNP 130162 to 130762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:09,940 DEBUG Processing 439/713 atomic regions from SNP 131613 to 132213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:09,971 DEBUG Processing 426/687 atomic regions from SNP 127728 to 128328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,010 DEBUG Processing 12/639 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:10,068 DEBUG Processing 570/831 atomic regions from SNP 170947 to 171547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,156 DEBUG Processing 440/713 atomic regions from SNP 131913 to 132513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,177 DEBUG Processing 435/727 atomic regions from SNP 130462 to 131062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,208 DEBUG Processing 427/687 atomic regions from SNP 128028 to 128628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,231 DEBUG Processing 13/639 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:10,324 DEBUG Processing 571/831 atomic regions from SNP 171247 to 171847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,398 DEBUG Processing 441/713 atomic regions from SNP 132213 to 132813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,432 DEBUG Processing 428/687 atomic regions from SNP 128328 to 128928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,448 DEBUG Processing 14/639 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:10,450 DEBUG Processing 436/727 atomic regions from SNP 130762 to 131362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,566 DEBUG Processing 572/831 atomic regions from SNP 171547 to 172147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,640 DEBUG Processing 442/713 atomic regions from SNP 132513 to 133113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,657 DEBUG Processing 429/687 atomic regions from SNP 128628 to 129228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,664 DEBUG Processing 15/639 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:10,717 DEBUG Processing 437/727 atomic regions from SNP 131062 to 131662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:10,811 DEBUG Processing 573/831 atomic regions from SNP 171847 to 172447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,867 DEBUG Processing 443/713 atomic regions from SNP 132813 to 133413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:10,888 DEBUG Processing 16/639 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:10,900 DEBUG Processing 430/687 atomic regions from SNP 128928 to 129528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:10,982 DEBUG Processing 438/727 atomic regions from SNP 131362 to 131962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,052 DEBUG Processing 574/831 atomic regions from SNP 172147 to 172747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,103 DEBUG Processing 17/639 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:11,115 DEBUG Processing 444/713 atomic regions from SNP 133113 to 133713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,147 DEBUG Processing 431/687 atomic regions from SNP 129228 to 129828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,255 DEBUG Processing 439/727 atomic regions from SNP 131662 to 132262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,310 DEBUG Processing 575/831 atomic regions from SNP 172447 to 173047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,325 DEBUG Processing 18/639 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:11,351 DEBUG Processing 445/713 atomic regions from SNP 133413 to 134013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,401 DEBUG Processing 432/687 atomic regions from SNP 129528 to 130128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,531 DEBUG Processing 440/727 atomic regions from SNP 131962 to 132562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,552 DEBUG Processing 19/639 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:11,565 DEBUG Processing 576/831 atomic regions from SNP 172747 to 173347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,570 DEBUG Processing 446/713 atomic regions from SNP 133713 to 134313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,657 DEBUG Processing 433/687 atomic regions from SNP 129828 to 130428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:11,784 DEBUG Processing 20/639 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:11,786 DEBUG Processing 447/713 atomic regions from SNP 134013 to 134613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:11,810 DEBUG Processing 441/727 atomic regions from SNP 132262 to 132862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:11,823 DEBUG Processing 577/831 atomic regions from SNP 173047 to 173647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,880 DEBUG Processing 434/687 atomic regions from SNP 130128 to 130728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,013 DEBUG Processing 21/639 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:12,032 DEBUG Processing 448/713 atomic regions from SNP 134313 to 134913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,077 DEBUG Processing 578/831 atomic regions from SNP 173347 to 173947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,086 DEBUG Processing 442/727 atomic regions from SNP 132562 to 133162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,105 DEBUG Processing 435/687 atomic regions from SNP 130428 to 131028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,234 DEBUG Processing 22/639 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:12,284 DEBUG Processing 449/713 atomic regions from SNP 134613 to 135213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,333 DEBUG Processing 436/687 atomic regions from SNP 130728 to 131328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,337 DEBUG Processing 579/831 atomic regions from SNP 173647 to 174247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,363 DEBUG Processing 443/727 atomic regions from SNP 132862 to 133462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,447 DEBUG Processing 23/639 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:12,527 DEBUG Processing 450/713 atomic regions from SNP 134913 to 135513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,556 DEBUG Processing 437/687 atomic regions from SNP 131028 to 131628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,589 DEBUG Processing 580/831 atomic regions from SNP 173947 to 174547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,636 DEBUG Processing 444/727 atomic regions from SNP 133162 to 133762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,668 DEBUG Processing 24/639 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:12,766 DEBUG Processing 451/713 atomic regions from SNP 135213 to 135813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,776 DEBUG Processing 438/687 atomic regions from SNP 131328 to 131928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:12,834 DEBUG Processing 581/831 atomic regions from SNP 174247 to 174847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,898 DEBUG Processing 25/639 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:12,912 DEBUG Processing 445/727 atomic regions from SNP 133462 to 134062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,980 DEBUG Processing 452/713 atomic regions from SNP 135513 to 136113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:12,998 DEBUG Processing 439/687 atomic regions from SNP 131628 to 132228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,082 DEBUG Processing 582/831 atomic regions from SNP 174547 to 175147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,120 DEBUG Processing 26/639 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:13,180 DEBUG Processing 446/727 atomic regions from SNP 133762 to 134362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,194 DEBUG Processing 453/713 atomic regions from SNP 135813 to 136413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,218 DEBUG Processing 440/687 atomic regions from SNP 131928 to 132528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,333 DEBUG Processing 583/831 atomic regions from SNP 174847 to 175447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,347 DEBUG Processing 27/639 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:13,406 DEBUG Processing 454/713 atomic regions from SNP 136113 to 136713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,434 DEBUG Processing 441/687 atomic regions from SNP 132228 to 132828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,451 DEBUG Processing 447/727 atomic regions from SNP 134062 to 134662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,581 DEBUG Processing 28/639 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:13,596 DEBUG Processing 584/831 atomic regions from SNP 175147 to 175747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,628 DEBUG Processing 455/713 atomic regions from SNP 136413 to 137013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,662 DEBUG Processing 442/687 atomic regions from SNP 132528 to 133128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,708 DEBUG Processing 448/727 atomic regions from SNP 134362 to 134962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,811 DEBUG Processing 29/639 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:13,849 DEBUG Processing 456/713 atomic regions from SNP 136713 to 137313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:13,855 DEBUG Processing 585/831 atomic regions from SNP 175447 to 176047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,890 DEBUG Processing 443/687 atomic regions from SNP 132828 to 133428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:13,935 DEBUG Processing 449/727 atomic regions from SNP 134662 to 135262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,032 DEBUG Processing 30/639 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:14,063 DEBUG Processing 457/713 atomic regions from SNP 137013 to 137613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,112 DEBUG Processing 586/831 atomic regions from SNP 175747 to 176347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,118 DEBUG Processing 444/687 atomic regions from SNP 133128 to 133728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,174 DEBUG Processing 450/727 atomic regions from SNP 134962 to 135562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,250 DEBUG Processing 31/639 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:14,268 DEBUG Processing 458/713 atomic regions from SNP 137313 to 137913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,338 DEBUG Processing 445/687 atomic regions from SNP 133428 to 134028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,368 DEBUG Processing 587/831 atomic regions from SNP 176047 to 176647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,416 DEBUG Processing 451/727 atomic regions from SNP 135262 to 135862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,474 DEBUG Processing 32/639 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:14,477 DEBUG Processing 459/713 atomic regions from SNP 137613 to 138213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,553 DEBUG Processing 446/687 atomic regions from SNP 133728 to 134328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,621 DEBUG Processing 588/831 atomic regions from SNP 176347 to 176947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,660 DEBUG Processing 452/727 atomic regions from SNP 135562 to 136162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,698 DEBUG Processing 460/713 atomic regions from SNP 137913 to 138513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,701 DEBUG Processing 33/639 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:14,775 DEBUG Processing 447/687 atomic regions from SNP 134028 to 134628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:14,876 DEBUG Processing 589/831 atomic regions from SNP 176647 to 177247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,896 DEBUG Processing 453/727 atomic regions from SNP 135862 to 136462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,913 DEBUG Processing 461/713 atomic regions from SNP 138213 to 138813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:14,932 DEBUG Processing 34/639 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:14,997 DEBUG Processing 448/687 atomic regions from SNP 134328 to 134928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,132 DEBUG Processing 462/713 atomic regions from SNP 138513 to 139113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,133 DEBUG Processing 590/831 atomic regions from SNP 176947 to 177547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,137 DEBUG Processing 454/727 atomic regions from SNP 136162 to 136762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,156 DEBUG Processing 35/639 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:15,212 DEBUG Processing 449/687 atomic regions from SNP 134628 to 135228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,347 DEBUG Processing 463/713 atomic regions from SNP 138813 to 139413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,371 DEBUG Processing 455/727 atomic regions from SNP 136462 to 137062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,376 DEBUG Processing 36/639 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:15,384 DEBUG Processing 591/831 atomic regions from SNP 177247 to 177847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,429 DEBUG Processing 450/687 atomic regions from SNP 134928 to 135528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,563 DEBUG Processing 464/713 atomic regions from SNP 139113 to 139713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,602 DEBUG Processing 37/639 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:15,606 DEBUG Processing 456/727 atomic regions from SNP 136762 to 137362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,636 DEBUG Processing 592/831 atomic regions from SNP 177547 to 178147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,646 DEBUG Processing 451/687 atomic regions from SNP 135228 to 135828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,779 DEBUG Processing 465/713 atomic regions from SNP 139413 to 140013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:15,828 DEBUG Processing 38/639 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:15,847 DEBUG Processing 457/727 atomic regions from SNP 137062 to 137662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,863 DEBUG Processing 452/687 atomic regions from SNP 135528 to 136128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:15,890 DEBUG Processing 593/831 atomic regions from SNP 177847 to 178447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,999 DEBUG Processing 466/713 atomic regions from SNP 139713 to 140313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,060 DEBUG Processing 39/639 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:16,084 DEBUG Processing 453/687 atomic regions from SNP 135828 to 136428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,088 DEBUG Processing 458/727 atomic regions from SNP 137362 to 137962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,147 DEBUG Processing 594/831 atomic regions from SNP 178147 to 178747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,217 DEBUG Processing 467/713 atomic regions from SNP 140013 to 140613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,295 DEBUG Processing 40/639 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:16,310 DEBUG Processing 454/687 atomic regions from SNP 136128 to 136728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,332 DEBUG Processing 459/727 atomic regions from SNP 137662 to 138262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,405 DEBUG Processing 595/831 atomic regions from SNP 178447 to 179047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,431 DEBUG Processing 468/713 atomic regions from SNP 140313 to 140913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,530 DEBUG Processing 41/639 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:16,537 DEBUG Processing 455/687 atomic regions from SNP 136428 to 137028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,577 DEBUG Processing 460/727 atomic regions from SNP 137962 to 138562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,644 DEBUG Processing 469/713 atomic regions from SNP 140613 to 141213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,663 DEBUG Processing 596/831 atomic regions from SNP 178747 to 179347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,763 DEBUG Processing 456/687 atomic regions from SNP 136728 to 137328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:16,766 DEBUG Processing 42/639 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:16,825 DEBUG Processing 461/727 atomic regions from SNP 138262 to 138862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,865 DEBUG Processing 470/713 atomic regions from SNP 140913 to 141513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:16,926 DEBUG Processing 597/831 atomic regions from SNP 179047 to 179647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,988 DEBUG Processing 457/687 atomic regions from SNP 137028 to 137628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,004 DEBUG Processing 43/639 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:17,072 DEBUG Processing 462/727 atomic regions from SNP 138562 to 139162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,080 DEBUG Processing 471/713 atomic regions from SNP 141213 to 141813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,196 DEBUG Processing 598/831 atomic regions from SNP 179347 to 179947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,220 DEBUG Processing 458/687 atomic regions from SNP 137328 to 137928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,246 DEBUG Processing 44/639 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:17,296 DEBUG Processing 472/713 atomic regions from SNP 141513 to 142113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,325 DEBUG Processing 463/727 atomic regions from SNP 138862 to 139462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,451 DEBUG Processing 459/687 atomic regions from SNP 137628 to 138228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,457 DEBUG Processing 599/831 atomic regions from SNP 179647 to 180247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,470 DEBUG Processing 45/639 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:17,517 DEBUG Processing 473/713 atomic regions from SNP 141813 to 142413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,563 DEBUG Processing 464/727 atomic regions from SNP 139162 to 139762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,676 DEBUG Processing 460/687 atomic regions from SNP 137928 to 138528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,702 DEBUG Processing 46/639 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:17,716 DEBUG Processing 600/831 atomic regions from SNP 179947 to 180547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,737 DEBUG Processing 474/713 atomic regions from SNP 142113 to 142713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,823 DEBUG Processing 465/727 atomic regions from SNP 139462 to 140062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,898 DEBUG Processing 461/687 atomic regions from SNP 138228 to 138828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:17,941 DEBUG Processing 47/639 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:17,959 DEBUG Processing 475/713 atomic regions from SNP 142413 to 143013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:17,981 DEBUG Processing 601/831 atomic regions from SNP 180247 to 180847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,068 DEBUG Processing 466/727 atomic regions from SNP 139762 to 140362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,125 DEBUG Processing 462/687 atomic regions from SNP 138528 to 139128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,179 DEBUG Processing 48/639 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:18,183 DEBUG Processing 476/713 atomic regions from SNP 142713 to 143313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,250 DEBUG Processing 602/831 atomic regions from SNP 180547 to 181147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,313 DEBUG Processing 467/727 atomic regions from SNP 140062 to 140662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,351 DEBUG Processing 463/687 atomic regions from SNP 138828 to 139428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,398 DEBUG Processing 477/713 atomic regions from SNP 143013 to 143613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,409 DEBUG Processing 49/639 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:18,507 DEBUG Processing 603/831 atomic regions from SNP 180847 to 181447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,556 DEBUG Processing 468/727 atomic regions from SNP 140362 to 140962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,585 DEBUG Processing 464/687 atomic regions from SNP 139128 to 139728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,626 DEBUG Processing 478/713 atomic regions from SNP 143313 to 143913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,648 DEBUG Processing 50/639 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:18,759 DEBUG Processing 604/831 atomic regions from SNP 181147 to 181747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,792 DEBUG Processing 469/727 atomic regions from SNP 140662 to 141262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,813 DEBUG Processing 465/687 atomic regions from SNP 139428 to 140028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:18,851 DEBUG Processing 479/713 atomic regions from SNP 143613 to 144213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:18,889 DEBUG Processing 51/639 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:19,004 DEBUG Processing 605/831 atomic regions from SNP 181447 to 182047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,015 DEBUG Processing 470/727 atomic regions from SNP 140962 to 141562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,034 DEBUG Processing 466/687 atomic regions from SNP 139728 to 140328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,063 DEBUG Processing 480/713 atomic regions from SNP 143913 to 144513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,111 DEBUG Processing 52/639 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:19,258 DEBUG Processing 471/727 atomic regions from SNP 141262 to 141862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,263 DEBUG Processing 467/687 atomic regions from SNP 140028 to 140628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,263 DEBUG Processing 606/831 atomic regions from SNP 181747 to 182347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,278 DEBUG Processing 481/713 atomic regions from SNP 144213 to 144813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,332 DEBUG Processing 53/639 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:19,492 DEBUG Processing 468/687 atomic regions from SNP 140328 to 140928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,500 DEBUG Processing 482/713 atomic regions from SNP 144513 to 145113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,504 DEBUG Processing 472/727 atomic regions from SNP 141562 to 142162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,525 DEBUG Processing 607/831 atomic regions from SNP 182047 to 182647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,558 DEBUG Processing 54/639 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:19,720 DEBUG Processing 483/713 atomic regions from SNP 144813 to 145413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,721 DEBUG Processing 469/687 atomic regions from SNP 140628 to 141228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,734 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:47:19,735 DEBUG chr9: Signal quantile: 0.992. signal threshold: 10. Best RMSEA: 0.016 2025-01-31 09:47:19,742 DEBUG Processing 473/727 atomic regions from SNP 141862 to 142462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,779 DEBUG Processing 608/831 atomic regions from SNP 182347 to 182947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,781 DEBUG Processing 55/639 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:19,940 DEBUG Processing 484/713 atomic regions from SNP 145113 to 145713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:19,954 DEBUG Processing 470/687 atomic regions from SNP 140928 to 141528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:19,987 DEBUG Processing 474/727 atomic regions from SNP 142162 to 142762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,009 DEBUG Processing 56/639 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:20,035 DEBUG Processing 609/831 atomic regions from SNP 182647 to 183247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,161 DEBUG Processing 485/713 atomic regions from SNP 145413 to 146013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,191 DEBUG Processing 471/687 atomic regions from SNP 141228 to 141828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,240 DEBUG Processing 475/727 atomic regions from SNP 142462 to 143062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,246 DEBUG Processing 57/639 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:20,299 DEBUG Processing 610/831 atomic regions from SNP 182947 to 183547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,380 DEBUG Processing 486/713 atomic regions from SNP 145713 to 146313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,426 DEBUG Processing 472/687 atomic regions from SNP 141528 to 142128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,483 DEBUG Processing 58/639 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:20,521 DEBUG Processing 476/727 atomic regions from SNP 142762 to 143362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,553 DEBUG Processing 611/831 atomic regions from SNP 183247 to 183847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,594 DEBUG Processing 487/713 atomic regions from SNP 146013 to 146613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,659 DEBUG Processing 473/687 atomic regions from SNP 141828 to 142428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,717 DEBUG Processing 59/639 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:20,791 DEBUG Processing 477/727 atomic regions from SNP 143062 to 143662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,821 DEBUG Processing 612/831 atomic regions from SNP 183547 to 184147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,821 DEBUG Processing 488/713 atomic regions from SNP 146313 to 146913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:20,882 DEBUG Processing 474/687 atomic regions from SNP 142128 to 142728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:20,941 DEBUG Processing 60/639 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:21,038 DEBUG Processing 478/727 atomic regions from SNP 143362 to 143962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,045 DEBUG Processing 489/713 atomic regions from SNP 146613 to 147213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,089 DEBUG Processing 613/831 atomic regions from SNP 183847 to 184447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,114 DEBUG Processing 475/687 atomic regions from SNP 142428 to 143028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,162 DEBUG Processing 61/639 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:21,261 DEBUG Processing 490/713 atomic regions from SNP 146913 to 147513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,269 DEBUG Processing 479/727 atomic regions from SNP 143662 to 144262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,339 DEBUG Processing 476/687 atomic regions from SNP 142728 to 143328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,341 DEBUG Processing 614/831 atomic regions from SNP 184147 to 184747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,406 DEBUG Processing 62/639 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:21,475 DEBUG Processing 491/713 atomic regions from SNP 147213 to 147813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,495 DEBUG Processing 480/727 atomic regions from SNP 143962 to 144562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,556 DEBUG Processing 477/687 atomic regions from SNP 143028 to 143628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,587 DEBUG Processing 615/831 atomic regions from SNP 184447 to 185047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,635 DEBUG Processing 63/639 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:21,695 DEBUG Processing 492/713 atomic regions from SNP 147513 to 148113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,735 DEBUG Processing 481/727 atomic regions from SNP 144262 to 144862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,783 DEBUG Processing 478/687 atomic regions from SNP 143328 to 143928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:21,830 DEBUG Processing 616/831 atomic regions from SNP 184747 to 185347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,846 DEBUG Processing 64/639 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:21,907 DEBUG Processing 493/713 atomic regions from SNP 147813 to 148413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,975 DEBUG Processing 482/727 atomic regions from SNP 144562 to 145162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,995 DEBUG chr9 total SNP count: 213551 2025-01-31 09:47:21,995 DEBUG chr9 length: 124595110 2025-01-31 09:47:21,995 DEBUG ----------------------------------------- 2025-01-31 09:47:21,995 INFO Processing SNPs in chr9 2025-01-31 09:47:22,023 DEBUG Processing 479/687 atomic regions from SNP 143628 to 144228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,063 DEBUG Processing 65/639 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:22,078 DEBUG Processing 617/831 atomic regions from SNP 185047 to 185647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,117 DEBUG Processing 494/713 atomic regions from SNP 148113 to 148713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,201 DEBUG Processing 483/727 atomic regions from SNP 144862 to 145462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,212 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 213551)] 2025-01-31 09:47:22,246 DEBUG Processing 480/687 atomic regions from SNP 143928 to 144528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,285 DEBUG Processing 66/639 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:22,322 DEBUG Processing 618/831 atomic regions from SNP 185347 to 185947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,332 DEBUG Processing 495/713 atomic regions from SNP 148413 to 149013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,361 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:22,424 DEBUG Processing 484/727 atomic regions from SNP 145162 to 145762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,461 DEBUG Processing 481/687 atomic regions from SNP 144228 to 144828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,510 DEBUG Processing 67/639 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:22,551 DEBUG Processing 496/713 atomic regions from SNP 148713 to 149313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,574 DEBUG Processing 619/831 atomic regions from SNP 185647 to 186247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,661 DEBUG Processing 485/727 atomic regions from SNP 145462 to 146062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,682 DEBUG Processing 482/687 atomic regions from SNP 144528 to 145128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,729 DEBUG Processing 68/639 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:22,764 DEBUG Processing 497/713 atomic regions from SNP 149013 to 149613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,825 DEBUG Processing 620/831 atomic regions from SNP 185947 to 186547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,904 DEBUG Processing 486/727 atomic regions from SNP 145762 to 146362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,912 DEBUG Processing 483/687 atomic regions from SNP 144828 to 145428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:22,957 DEBUG Processing 69/639 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:22,981 DEBUG Processing 498/713 atomic regions from SNP 149313 to 149913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,071 DEBUG Processing 621/831 atomic regions from SNP 186247 to 186847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,140 DEBUG Processing 484/687 atomic regions from SNP 145128 to 145728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,145 DEBUG Processing 487/727 atomic regions from SNP 146062 to 146662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,202 DEBUG Processing 499/713 atomic regions from SNP 149613 to 150213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,206 DEBUG Processing 70/639 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:23,331 DEBUG Processing 622/831 atomic regions from SNP 186547 to 187147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,367 DEBUG Processing 485/687 atomic regions from SNP 145428 to 146028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,385 DEBUG Processing 488/727 atomic regions from SNP 146362 to 146962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,424 DEBUG Processing 500/713 atomic regions from SNP 149913 to 150513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,454 DEBUG Processing 71/639 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:23,596 DEBUG Processing 486/687 atomic regions from SNP 145728 to 146328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,607 DEBUG Processing 623/831 atomic regions from SNP 186847 to 187447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,624 DEBUG Processing 489/727 atomic regions from SNP 146662 to 147262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,648 DEBUG Processing 501/713 atomic regions from SNP 150213 to 150813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,692 DEBUG Processing 72/639 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:23,832 DEBUG Processing 487/687 atomic regions from SNP 146028 to 146628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:23,876 DEBUG Processing 490/727 atomic regions from SNP 146962 to 147562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,881 DEBUG Processing 502/713 atomic regions from SNP 150513 to 151113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,904 DEBUG Processing 624/831 atomic regions from SNP 187147 to 187747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,949 DEBUG Processing 73/639 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:24,059 DEBUG Processing 488/687 atomic regions from SNP 146328 to 146928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,111 DEBUG Processing 503/713 atomic regions from SNP 150813 to 151413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,122 DEBUG Processing 491/727 atomic regions from SNP 147262 to 147862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,191 DEBUG Processing 625/831 atomic regions from SNP 187447 to 188047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,202 DEBUG Processing 74/639 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:24,287 DEBUG Processing 489/687 atomic regions from SNP 146628 to 147228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,338 DEBUG Processing 504/713 atomic regions from SNP 151113 to 151713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,360 DEBUG Processing 492/727 atomic regions from SNP 147562 to 148162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,462 DEBUG Processing 75/639 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:24,486 DEBUG Processing 626/831 atomic regions from SNP 187747 to 188347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,518 DEBUG Processing 490/687 atomic regions from SNP 146928 to 147528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,560 DEBUG Processing 505/713 atomic regions from SNP 151413 to 152013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,600 DEBUG Processing 493/727 atomic regions from SNP 147862 to 148462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,717 DEBUG Processing 76/639 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:24,750 DEBUG Processing 491/687 atomic regions from SNP 147228 to 147828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,780 DEBUG Processing 627/831 atomic regions from SNP 188047 to 188647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,809 DEBUG Processing 506/713 atomic regions from SNP 151713 to 152313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,844 DEBUG Processing 494/727 atomic regions from SNP 148162 to 148762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,975 DEBUG Processing 492/687 atomic regions from SNP 147528 to 148128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:24,980 DEBUG Processing 77/639 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:25,046 DEBUG Processing 507/713 atomic regions from SNP 152013 to 152613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,063 DEBUG Processing 628/831 atomic regions from SNP 188347 to 188947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,095 DEBUG Processing 495/727 atomic regions from SNP 148462 to 149062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,200 DEBUG Processing 493/687 atomic regions from SNP 147828 to 148428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,235 DEBUG Processing 78/639 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:25,266 DEBUG Processing 508/713 atomic regions from SNP 152313 to 152913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,329 DEBUG Processing 629/831 atomic regions from SNP 188647 to 189247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,344 DEBUG Processing 496/727 atomic regions from SNP 148762 to 149362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,434 DEBUG Processing 494/687 atomic regions from SNP 148128 to 148728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,471 DEBUG Processing 79/639 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:25,491 DEBUG Processing 509/713 atomic regions from SNP 152613 to 153213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,596 DEBUG Processing 630/831 atomic regions from SNP 188947 to 189547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,596 DEBUG Processing 497/727 atomic regions from SNP 149062 to 149662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,670 DEBUG Processing 495/687 atomic regions from SNP 148428 to 149028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,726 DEBUG Processing 510/713 atomic regions from SNP 152913 to 153513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,728 DEBUG Processing 80/639 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:25,844 DEBUG Processing 498/727 atomic regions from SNP 149362 to 149962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,858 DEBUG Processing 631/831 atomic regions from SNP 189247 to 189847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,901 DEBUG Processing 496/687 atomic regions from SNP 148728 to 149328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:25,971 DEBUG Processing 511/713 atomic regions from SNP 153213 to 153813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,980 DEBUG Processing 81/639 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:26,088 DEBUG Processing 499/727 atomic regions from SNP 149662 to 150262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,124 DEBUG Processing 632/831 atomic regions from SNP 189547 to 190147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,126 DEBUG Processing 497/687 atomic regions from SNP 149028 to 149628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,209 DEBUG Processing 512/713 atomic regions from SNP 153513 to 154113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,234 DEBUG Processing 82/639 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:26,325 DEBUG Processing 500/727 atomic regions from SNP 149962 to 150562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,347 DEBUG Processing 498/687 atomic regions from SNP 149328 to 149928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,386 DEBUG Processing 633/831 atomic regions from SNP 189847 to 190447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,443 DEBUG Processing 513/713 atomic regions from SNP 153813 to 154413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,494 DEBUG Processing 83/639 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:26,566 DEBUG Processing 501/727 atomic regions from SNP 150262 to 150862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,573 DEBUG Processing 499/687 atomic regions from SNP 149628 to 150228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,653 DEBUG Processing 634/831 atomic regions from SNP 190147 to 190747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,685 DEBUG Processing 514/713 atomic regions from SNP 154113 to 154713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,730 DEBUG Processing 84/639 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:26,807 DEBUG Processing 500/687 atomic regions from SNP 149928 to 150528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:26,833 DEBUG Processing 502/727 atomic regions from SNP 150562 to 151162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,898 DEBUG Processing 515/713 atomic regions from SNP 154413 to 155013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,935 DEBUG Processing 635/831 atomic regions from SNP 190447 to 191047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,962 DEBUG Processing 85/639 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:27,039 DEBUG Processing 501/687 atomic regions from SNP 150228 to 150828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,093 DEBUG Processing 503/727 atomic regions from SNP 150862 to 151462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,126 DEBUG Processing 516/713 atomic regions from SNP 154713 to 155313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,202 DEBUG Processing 86/639 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:27,205 DEBUG Processing 636/831 atomic regions from SNP 190747 to 191347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,273 DEBUG Processing 502/687 atomic regions from SNP 150528 to 151128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,334 DEBUG Processing 504/727 atomic regions from SNP 151162 to 151762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,343 DEBUG Processing 517/713 atomic regions from SNP 155013 to 155613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,442 DEBUG Processing 87/639 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:27,479 DEBUG Processing 637/831 atomic regions from SNP 191047 to 191647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,514 DEBUG Processing 503/687 atomic regions from SNP 150828 to 151428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,565 DEBUG Processing 518/713 atomic regions from SNP 155313 to 155913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,582 DEBUG Processing 505/727 atomic regions from SNP 151462 to 152062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,680 DEBUG Processing 88/639 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:27,750 DEBUG Processing 504/687 atomic regions from SNP 151128 to 151728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:27,753 DEBUG Processing 638/831 atomic regions from SNP 191347 to 191947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,792 DEBUG Processing 519/713 atomic regions from SNP 155613 to 156213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,833 DEBUG Processing 506/727 atomic regions from SNP 151762 to 152362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,902 DEBUG Processing 89/639 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:27,978 DEBUG Processing 505/687 atomic regions from SNP 151428 to 152028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,018 DEBUG Processing 520/713 atomic regions from SNP 155913 to 156513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,038 DEBUG Processing 639/831 atomic regions from SNP 191647 to 192247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,079 DEBUG Processing 507/727 atomic regions from SNP 152062 to 152662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,129 DEBUG Processing 90/639 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:28,207 DEBUG Processing 506/687 atomic regions from SNP 151728 to 152328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,241 DEBUG Processing 521/713 atomic regions from SNP 156213 to 156813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,328 DEBUG Processing 640/831 atomic regions from SNP 191947 to 192547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,336 DEBUG Processing 508/727 atomic regions from SNP 152362 to 152962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,368 DEBUG Processing 91/639 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:28,432 DEBUG Processing 507/687 atomic regions from SNP 152028 to 152628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,453 DEBUG Processing 522/713 atomic regions from SNP 156513 to 157113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,599 DEBUG Processing 509/727 atomic regions from SNP 152662 to 153262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,614 DEBUG Processing 92/639 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:28,624 DEBUG Processing 641/831 atomic regions from SNP 192247 to 192847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,668 DEBUG Processing 508/687 atomic regions from SNP 152328 to 152928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:28,674 DEBUG Processing 523/713 atomic regions from SNP 156813 to 157413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,862 DEBUG Processing 93/639 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:28,862 DEBUG Processing 510/727 atomic regions from SNP 152962 to 153562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,902 DEBUG Processing 642/831 atomic regions from SNP 192547 to 193147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,911 DEBUG Processing 524/713 atomic regions from SNP 157113 to 157713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,917 DEBUG Processing 509/687 atomic regions from SNP 152628 to 153228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,099 DEBUG Processing 94/639 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:29,112 DEBUG Processing 511/727 atomic regions from SNP 153262 to 153862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,139 DEBUG Processing 525/713 atomic regions from SNP 157413 to 158013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,159 DEBUG Processing 510/687 atomic regions from SNP 152928 to 153528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,169 DEBUG Processing 643/831 atomic regions from SNP 192847 to 193447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,331 DEBUG Processing 95/639 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:29,361 DEBUG Processing 512/727 atomic regions from SNP 153562 to 154162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,362 DEBUG Processing 526/713 atomic regions from SNP 157713 to 158313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,395 DEBUG Processing 511/687 atomic regions from SNP 153228 to 153828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,438 DEBUG Processing 644/831 atomic regions from SNP 193147 to 193747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,561 DEBUG Processing 96/639 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:29,576 DEBUG Processing 527/713 atomic regions from SNP 158013 to 158613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,611 DEBUG Processing 513/727 atomic regions from SNP 153862 to 154462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,625 DEBUG Processing 512/687 atomic regions from SNP 153528 to 154128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,712 DEBUG Processing 645/831 atomic regions from SNP 193447 to 194047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,787 DEBUG Processing 97/639 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:29,792 DEBUG Processing 528/713 atomic regions from SNP 158313 to 158913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,847 DEBUG Processing 513/687 atomic regions from SNP 153828 to 154428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:29,852 DEBUG Processing 514/727 atomic regions from SNP 154162 to 154762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,980 DEBUG Processing 646/831 atomic regions from SNP 193747 to 194347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,014 DEBUG Processing 98/639 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:30,015 DEBUG Processing 529/713 atomic regions from SNP 158613 to 159213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,070 DEBUG Processing 514/687 atomic regions from SNP 154128 to 154728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,086 DEBUG Processing 515/727 atomic regions from SNP 154462 to 155062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,235 DEBUG Processing 530/713 atomic regions from SNP 158913 to 159513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,241 DEBUG Processing 99/639 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:30,242 DEBUG Processing 647/831 atomic regions from SNP 194047 to 194647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,296 DEBUG Processing 515/687 atomic regions from SNP 154428 to 155028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,315 DEBUG Processing 516/727 atomic regions from SNP 154762 to 155362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,452 DEBUG Processing 531/713 atomic regions from SNP 159213 to 159813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,472 DEBUG Processing 100/639 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:30,506 DEBUG Processing 648/831 atomic regions from SNP 194347 to 194947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,520 DEBUG Processing 516/687 atomic regions from SNP 154728 to 155328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,554 DEBUG Processing 517/727 atomic regions from SNP 155062 to 155662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,664 DEBUG Processing 532/713 atomic regions from SNP 159513 to 160113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,700 DEBUG Processing 101/639 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:30,742 DEBUG Processing 517/687 atomic regions from SNP 155028 to 155628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:30,763 DEBUG Processing 649/831 atomic regions from SNP 194647 to 195247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,791 DEBUG Processing 518/727 atomic regions from SNP 155362 to 155962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,877 DEBUG Processing 533/713 atomic regions from SNP 159813 to 160413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,931 DEBUG Processing 102/639 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:30,968 DEBUG Processing 518/687 atomic regions from SNP 155328 to 155928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,019 DEBUG Processing 650/831 atomic regions from SNP 194947 to 195547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,029 DEBUG Processing 519/727 atomic regions from SNP 155662 to 156262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,087 DEBUG Processing 534/713 atomic regions from SNP 160113 to 160713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,160 DEBUG Processing 103/639 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:31,195 DEBUG Processing 519/687 atomic regions from SNP 155628 to 156228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,269 DEBUG Processing 520/727 atomic regions from SNP 155962 to 156562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,276 DEBUG Processing 651/831 atomic regions from SNP 195247 to 195847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,298 DEBUG Processing 535/713 atomic regions from SNP 160413 to 161013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,382 DEBUG Processing 104/639 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:31,422 DEBUG Processing 520/687 atomic regions from SNP 155928 to 156528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,511 DEBUG Processing 521/727 atomic regions from SNP 156262 to 156862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,515 DEBUG Processing 536/713 atomic regions from SNP 160713 to 161313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,560 DEBUG Processing 652/831 atomic regions from SNP 195547 to 196147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,601 DEBUG Processing 105/639 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:31,644 DEBUG Processing 521/687 atomic regions from SNP 156228 to 156828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,738 DEBUG Processing 537/713 atomic regions from SNP 161013 to 161613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,752 DEBUG Processing 522/727 atomic regions from SNP 156562 to 157162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,826 DEBUG Processing 106/639 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:31,842 DEBUG Processing 653/831 atomic regions from SNP 195847 to 196447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,862 DEBUG Processing 522/687 atomic regions from SNP 156528 to 157128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:31,960 DEBUG Processing 538/713 atomic regions from SNP 161313 to 161913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,992 DEBUG Processing 523/727 atomic regions from SNP 156862 to 157462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,056 DEBUG Processing 107/639 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:32,089 DEBUG Processing 523/687 atomic regions from SNP 156828 to 157428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,103 DEBUG Processing 654/831 atomic regions from SNP 196147 to 196747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,181 DEBUG Processing 539/713 atomic regions from SNP 161613 to 162213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,233 DEBUG Processing 524/727 atomic regions from SNP 157162 to 157762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,282 DEBUG Processing 108/639 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:32,320 DEBUG Processing 524/687 atomic regions from SNP 157128 to 157728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,354 DEBUG Processing 655/831 atomic regions from SNP 196447 to 197047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,390 DEBUG Processing 540/713 atomic regions from SNP 161913 to 162513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,473 DEBUG Processing 525/727 atomic regions from SNP 157462 to 158062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,520 DEBUG Processing 109/639 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:32,554 DEBUG Processing 525/687 atomic regions from SNP 157428 to 158028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,604 DEBUG Processing 541/713 atomic regions from SNP 162213 to 162813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,606 DEBUG Processing 656/831 atomic regions from SNP 196747 to 197347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,713 DEBUG Processing 526/727 atomic regions from SNP 157762 to 158362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,750 DEBUG Processing 110/639 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:32,783 DEBUG Processing 526/687 atomic regions from SNP 157728 to 158328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:32,824 DEBUG Processing 542/713 atomic regions from SNP 162513 to 163113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,854 DEBUG Processing 657/831 atomic regions from SNP 197047 to 197647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,948 DEBUG Processing 527/727 atomic regions from SNP 158062 to 158662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,981 DEBUG Processing 111/639 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:33,009 DEBUG Processing 527/687 atomic regions from SNP 158028 to 158628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,048 DEBUG Processing 543/713 atomic regions from SNP 162813 to 163413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,115 DEBUG Processing 658/831 atomic regions from SNP 197347 to 197947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,181 DEBUG Processing 528/727 atomic regions from SNP 158362 to 158962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,204 DEBUG Processing 112/639 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:33,229 DEBUG Processing 528/687 atomic regions from SNP 158328 to 158928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,265 DEBUG Processing 544/713 atomic regions from SNP 163113 to 163713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,377 DEBUG Processing 659/831 atomic regions from SNP 197647 to 198247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,418 DEBUG Processing 529/727 atomic regions from SNP 158662 to 159262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,428 DEBUG Processing 113/639 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:33,455 DEBUG Processing 529/687 atomic regions from SNP 158628 to 159228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,481 DEBUG Processing 545/713 atomic regions from SNP 163413 to 164013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,635 DEBUG Processing 660/831 atomic regions from SNP 197947 to 198547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,658 DEBUG Processing 114/639 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:33,660 DEBUG Processing 530/727 atomic regions from SNP 158962 to 159562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,687 DEBUG Processing 530/687 atomic regions from SNP 158928 to 159528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,703 DEBUG Processing 546/713 atomic regions from SNP 163713 to 164313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,888 DEBUG Processing 115/639 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:33,897 DEBUG Processing 661/831 atomic regions from SNP 198247 to 198847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,905 DEBUG Processing 531/727 atomic regions from SNP 159262 to 159862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,921 DEBUG Processing 531/687 atomic regions from SNP 159228 to 159828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:33,927 DEBUG Processing 547/713 atomic regions from SNP 164013 to 164613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,112 DEBUG Processing 116/639 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:34,145 DEBUG Processing 532/727 atomic regions from SNP 159562 to 160162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,147 DEBUG Processing 548/713 atomic regions from SNP 164313 to 164913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,149 DEBUG Processing 532/687 atomic regions from SNP 159528 to 160128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,174 DEBUG Processing 662/831 atomic regions from SNP 198547 to 199147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,342 DEBUG Processing 117/639 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:34,368 DEBUG Processing 549/713 atomic regions from SNP 164613 to 165213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,379 DEBUG Processing 533/687 atomic regions from SNP 159828 to 160428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,387 DEBUG Processing 533/727 atomic regions from SNP 159862 to 160462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,441 DEBUG Processing 663/831 atomic regions from SNP 198847 to 199447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,576 DEBUG Processing 118/639 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:34,593 DEBUG Processing 550/713 atomic regions from SNP 164913 to 165513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,610 DEBUG Processing 534/687 atomic regions from SNP 160128 to 160728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,630 DEBUG Processing 534/727 atomic regions from SNP 160162 to 160762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,694 DEBUG Processing 664/831 atomic regions from SNP 199147 to 199747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,802 DEBUG Processing 119/639 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:34,813 DEBUG Processing 551/713 atomic regions from SNP 165213 to 165813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,839 DEBUG Processing 535/687 atomic regions from SNP 160428 to 161028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,876 DEBUG Processing 535/727 atomic regions from SNP 160462 to 161062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,950 DEBUG Processing 665/831 atomic regions from SNP 199447 to 200047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,023 DEBUG Processing 120/639 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:35,027 DEBUG Processing 552/713 atomic regions from SNP 165513 to 166113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,065 DEBUG Processing 536/687 atomic regions from SNP 160728 to 161328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,113 DEBUG Processing 536/727 atomic regions from SNP 160762 to 161362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,219 DEBUG Processing 666/831 atomic regions from SNP 199747 to 200347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,250 DEBUG Processing 553/713 atomic regions from SNP 165813 to 166413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,251 DEBUG Processing 121/639 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:35,299 DEBUG Processing 537/687 atomic regions from SNP 161028 to 161628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,348 DEBUG Processing 537/727 atomic regions from SNP 161062 to 161662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,476 DEBUG Processing 554/713 atomic regions from SNP 166113 to 166713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,487 DEBUG Processing 122/639 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:35,495 DEBUG Processing 667/831 atomic regions from SNP 200047 to 200647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,552 DEBUG Processing 538/687 atomic regions from SNP 161328 to 161928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,586 DEBUG Processing 538/727 atomic regions from SNP 161362 to 161962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,690 DEBUG Processing 555/713 atomic regions from SNP 166413 to 167013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,719 DEBUG Processing 123/639 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:35,766 DEBUG Processing 668/831 atomic regions from SNP 200347 to 200947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,807 DEBUG Processing 539/687 atomic regions from SNP 161628 to 162228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,835 DEBUG Processing 539/727 atomic regions from SNP 161662 to 162262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,900 DEBUG Processing 556/713 atomic regions from SNP 166713 to 167313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,944 DEBUG Processing 124/639 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:36,037 DEBUG Processing 540/687 atomic regions from SNP 161928 to 162528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,046 DEBUG Processing 669/831 atomic regions from SNP 200647 to 201247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,077 DEBUG Processing 540/727 atomic regions from SNP 161962 to 162562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,120 DEBUG Processing 557/713 atomic regions from SNP 167013 to 167613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,167 DEBUG Processing 125/639 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:36,264 DEBUG Processing 541/687 atomic regions from SNP 162228 to 162828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,316 DEBUG Processing 670/831 atomic regions from SNP 200947 to 201547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,319 DEBUG Processing 541/727 atomic regions from SNP 162262 to 162862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,344 DEBUG Processing 558/713 atomic regions from SNP 167313 to 167913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,394 DEBUG Processing 126/639 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:36,489 DEBUG Processing 542/687 atomic regions from SNP 162528 to 163128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,560 DEBUG Processing 559/713 atomic regions from SNP 167613 to 168213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,563 DEBUG Processing 542/727 atomic regions from SNP 162562 to 163162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,600 DEBUG Processing 671/831 atomic regions from SNP 201247 to 201847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,624 DEBUG Processing 127/639 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:36,719 DEBUG Processing 543/687 atomic regions from SNP 162828 to 163428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,776 DEBUG Processing 560/713 atomic regions from SNP 167913 to 168513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,805 DEBUG Processing 543/727 atomic regions from SNP 162862 to 163462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,857 DEBUG Processing 128/639 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:36,876 DEBUG Processing 672/831 atomic regions from SNP 201547 to 202147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,952 DEBUG Processing 544/687 atomic regions from SNP 163128 to 163728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,999 DEBUG Processing 561/713 atomic regions from SNP 168213 to 168813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,047 DEBUG Processing 544/727 atomic regions from SNP 163162 to 163762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,105 DEBUG Processing 129/639 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:37,153 DEBUG Processing 673/831 atomic regions from SNP 201847 to 202447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,182 DEBUG Processing 545/687 atomic regions from SNP 163428 to 164028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,224 DEBUG Processing 562/713 atomic regions from SNP 168513 to 169113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,287 DEBUG Processing 545/727 atomic regions from SNP 163462 to 164062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,350 DEBUG Processing 130/639 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:37,413 DEBUG Processing 546/687 atomic regions from SNP 163728 to 164328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,420 DEBUG Processing 674/831 atomic regions from SNP 202147 to 202747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,445 DEBUG Processing 563/713 atomic regions from SNP 168813 to 169413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,529 DEBUG Processing 546/727 atomic regions from SNP 163762 to 164362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,581 DEBUG Processing 131/639 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:37,645 DEBUG Processing 547/687 atomic regions from SNP 164028 to 164628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,683 DEBUG Processing 564/713 atomic regions from SNP 169113 to 169713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,686 DEBUG Processing 675/831 atomic regions from SNP 202447 to 203047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,764 DEBUG Processing 547/727 atomic regions from SNP 164062 to 164662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,804 DEBUG Processing 132/639 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:37,875 DEBUG Processing 548/687 atomic regions from SNP 164328 to 164928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,913 DEBUG Processing 565/713 atomic regions from SNP 169413 to 170013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,950 DEBUG Processing 676/831 atomic regions from SNP 202747 to 203347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,005 DEBUG Processing 548/727 atomic regions from SNP 164362 to 164962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,055 DEBUG Processing 133/639 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:38,103 DEBUG Processing 549/687 atomic regions from SNP 164628 to 165228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,132 DEBUG Processing 566/713 atomic regions from SNP 169713 to 170313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,210 DEBUG Processing 677/831 atomic regions from SNP 203047 to 203647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,251 DEBUG Processing 549/727 atomic regions from SNP 164662 to 165262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,310 DEBUG Processing 134/639 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:38,348 DEBUG Processing 550/687 atomic regions from SNP 164928 to 165528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,364 DEBUG Processing 567/713 atomic regions from SNP 170013 to 170613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,468 DEBUG Processing 678/831 atomic regions from SNP 203347 to 203947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,493 DEBUG Processing 550/727 atomic regions from SNP 164962 to 165562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,537 DEBUG Processing 135/639 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:38,584 DEBUG Processing 551/687 atomic regions from SNP 165228 to 165828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,614 DEBUG Processing 568/713 atomic regions from SNP 170313 to 170913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,731 DEBUG Processing 679/831 atomic regions from SNP 203647 to 204247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,735 DEBUG Processing 551/727 atomic regions from SNP 165262 to 165862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,782 DEBUG Processing 136/639 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:38,810 DEBUG Processing 552/687 atomic regions from SNP 165528 to 166128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,855 DEBUG Processing 569/713 atomic regions from SNP 170613 to 171213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,985 DEBUG Processing 552/727 atomic regions from SNP 165562 to 166162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,000 DEBUG Processing 680/831 atomic regions from SNP 203947 to 204547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,031 DEBUG Processing 553/687 atomic regions from SNP 165828 to 166428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,036 DEBUG Processing 137/639 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:39,096 DEBUG Processing 570/713 atomic regions from SNP 170913 to 171513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,233 DEBUG Processing 553/727 atomic regions from SNP 165862 to 166462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,255 DEBUG Processing 554/687 atomic regions from SNP 166128 to 166728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,264 DEBUG Processing 681/831 atomic regions from SNP 204247 to 204847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,294 DEBUG Processing 138/639 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:39,337 DEBUG Processing 571/713 atomic regions from SNP 171213 to 171813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,478 DEBUG Processing 555/687 atomic regions from SNP 166428 to 167028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,479 DEBUG Processing 554/727 atomic regions from SNP 166162 to 166762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,541 DEBUG Processing 139/639 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:39,547 DEBUG Processing 682/831 atomic regions from SNP 204547 to 205147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,581 DEBUG Processing 572/713 atomic regions from SNP 171513 to 172113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,702 DEBUG Processing 556/687 atomic regions from SNP 166728 to 167328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,730 DEBUG Processing 555/727 atomic regions from SNP 166462 to 167062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,774 DEBUG Processing 140/639 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:39,822 DEBUG Processing 573/713 atomic regions from SNP 171813 to 172413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,823 DEBUG Processing 683/831 atomic regions from SNP 204847 to 205447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,924 DEBUG Processing 557/687 atomic regions from SNP 167028 to 167628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,984 DEBUG Processing 556/727 atomic regions from SNP 166762 to 167362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,018 DEBUG Processing 141/639 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:40,063 DEBUG Processing 574/713 atomic regions from SNP 172113 to 172713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,089 DEBUG Processing 684/831 atomic regions from SNP 205147 to 205747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,139 DEBUG Processing 558/687 atomic regions from SNP 167328 to 167928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,234 DEBUG Processing 557/727 atomic regions from SNP 167062 to 167662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,271 DEBUG Processing 142/639 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:40,292 DEBUG Processing 575/713 atomic regions from SNP 172413 to 173013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,359 DEBUG Processing 685/831 atomic regions from SNP 205447 to 206047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,367 DEBUG Processing 559/687 atomic regions from SNP 167628 to 168228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,465 DEBUG Processing 558/727 atomic regions from SNP 167362 to 167962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,512 DEBUG Processing 576/713 atomic regions from SNP 172713 to 173313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,519 DEBUG Processing 143/639 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:40,601 DEBUG Processing 560/687 atomic regions from SNP 167928 to 168528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,626 DEBUG Processing 686/831 atomic regions from SNP 205747 to 206347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,704 DEBUG Processing 559/727 atomic regions from SNP 167662 to 168262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,726 DEBUG Processing 577/713 atomic regions from SNP 173013 to 173613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,753 DEBUG Processing 144/639 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:40,829 DEBUG Processing 561/687 atomic regions from SNP 168228 to 168828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,890 DEBUG Processing 687/831 atomic regions from SNP 206047 to 206647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,945 DEBUG Processing 578/713 atomic regions from SNP 173313 to 173913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,955 DEBUG Processing 560/727 atomic regions from SNP 167962 to 168562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,990 DEBUG Processing 145/639 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:41,058 DEBUG Processing 562/687 atomic regions from SNP 168528 to 169128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,150 DEBUG Processing 688/831 atomic regions from SNP 206347 to 206947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,174 DEBUG Processing 579/713 atomic regions from SNP 173613 to 174213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,199 DEBUG Processing 561/727 atomic regions from SNP 168262 to 168862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,221 DEBUG Processing 146/639 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:41,280 DEBUG Processing 563/687 atomic regions from SNP 168828 to 169428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,399 DEBUG Processing 580/713 atomic regions from SNP 173913 to 174513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,409 DEBUG Processing 689/831 atomic regions from SNP 206647 to 207247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,438 DEBUG Processing 562/727 atomic regions from SNP 168562 to 169162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,446 DEBUG Processing 147/639 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:41,492 DEBUG Processing 564/687 atomic regions from SNP 169128 to 169728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,634 DEBUG Processing 581/713 atomic regions from SNP 174213 to 174813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,674 DEBUG Processing 148/639 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:41,676 DEBUG Processing 690/831 atomic regions from SNP 206947 to 207547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,681 DEBUG Processing 563/727 atomic regions from SNP 168862 to 169462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,710 DEBUG Processing 565/687 atomic regions from SNP 169428 to 170028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,858 DEBUG Processing 582/713 atomic regions from SNP 174513 to 175113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,906 DEBUG Processing 149/639 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:41,927 DEBUG Processing 564/727 atomic regions from SNP 169162 to 169762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,937 DEBUG Processing 566/687 atomic regions from SNP 169728 to 170328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,970 DEBUG Processing 691/831 atomic regions from SNP 207247 to 207847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,069 DEBUG Processing 583/713 atomic regions from SNP 174813 to 175413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,136 DEBUG Processing 150/639 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:42,163 DEBUG Processing 567/687 atomic regions from SNP 170028 to 170628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,175 DEBUG Processing 565/727 atomic regions from SNP 169462 to 170062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,270 DEBUG Processing 692/831 atomic regions from SNP 207547 to 208147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,284 DEBUG Processing 584/713 atomic regions from SNP 175113 to 175713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,361 DEBUG Processing 151/639 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:42,381 DEBUG Processing 568/687 atomic regions from SNP 170328 to 170928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,416 DEBUG Processing 566/727 atomic regions from SNP 169762 to 170362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,509 DEBUG Processing 585/713 atomic regions from SNP 175413 to 176013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,570 DEBUG Processing 693/831 atomic regions from SNP 207847 to 208447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,590 DEBUG Processing 152/639 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:42,600 DEBUG Processing 569/687 atomic regions from SNP 170628 to 171228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,652 DEBUG Processing 567/727 atomic regions from SNP 170062 to 170662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,722 DEBUG Processing 586/713 atomic regions from SNP 175713 to 176313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,828 DEBUG Processing 153/639 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:42,834 DEBUG Processing 570/687 atomic regions from SNP 170928 to 171528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,873 DEBUG Processing 694/831 atomic regions from SNP 208147 to 208747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,891 DEBUG Processing 568/727 atomic regions from SNP 170362 to 170962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,924 DEBUG Processing 587/713 atomic regions from SNP 176013 to 176613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,067 DEBUG Processing 571/687 atomic regions from SNP 171228 to 171828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,067 DEBUG Processing 154/639 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:43,140 DEBUG Processing 569/727 atomic regions from SNP 170662 to 171262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,141 DEBUG Processing 588/713 atomic regions from SNP 176313 to 176913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,156 DEBUG Processing 695/831 atomic regions from SNP 208447 to 209047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,289 DEBUG Processing 155/639 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:43,298 DEBUG Processing 572/687 atomic regions from SNP 171528 to 172128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,363 DEBUG Processing 589/713 atomic regions from SNP 176613 to 177213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,392 DEBUG Processing 570/727 atomic regions from SNP 170962 to 171562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,432 DEBUG Processing 696/831 atomic regions from SNP 208747 to 209347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,508 DEBUG Processing 156/639 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:43,540 DEBUG Processing 573/687 atomic regions from SNP 171828 to 172428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,578 DEBUG Processing 590/713 atomic regions from SNP 176913 to 177513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,638 DEBUG Processing 571/727 atomic regions from SNP 171262 to 171862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,696 DEBUG Processing 697/831 atomic regions from SNP 209047 to 209647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,739 DEBUG Processing 157/639 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:43,784 DEBUG Processing 574/687 atomic regions from SNP 172128 to 172728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,792 DEBUG Processing 591/713 atomic regions from SNP 177213 to 177813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,873 DEBUG Processing 572/727 atomic regions from SNP 171562 to 172162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,957 DEBUG Processing 698/831 atomic regions from SNP 209347 to 209947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,987 DEBUG Processing 158/639 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:44,013 DEBUG Processing 592/713 atomic regions from SNP 177513 to 178113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,049 DEBUG Processing 575/687 atomic regions from SNP 172428 to 173028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,106 DEBUG Processing 573/727 atomic regions from SNP 171862 to 172462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,212 DEBUG Processing 699/831 atomic regions from SNP 209647 to 210247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,230 DEBUG Processing 593/713 atomic regions from SNP 177813 to 178413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,240 DEBUG Processing 159/639 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:44,309 DEBUG Processing 576/687 atomic regions from SNP 172728 to 173328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,350 DEBUG Processing 574/727 atomic regions from SNP 172162 to 172762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,432 DEBUG Processing 594/713 atomic regions from SNP 178113 to 178713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,462 DEBUG Processing 700/831 atomic regions from SNP 209947 to 210547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,463 DEBUG Processing 160/639 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:44,568 DEBUG Processing 577/687 atomic regions from SNP 173028 to 173628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,596 DEBUG Processing 575/727 atomic regions from SNP 172462 to 173062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,647 DEBUG Processing 595/713 atomic regions from SNP 178413 to 179013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,688 DEBUG Processing 161/639 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:44,720 DEBUG Processing 701/831 atomic regions from SNP 210247 to 210847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,834 DEBUG Processing 578/687 atomic regions from SNP 173328 to 173928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,838 DEBUG Processing 576/727 atomic regions from SNP 172762 to 173362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,865 DEBUG Processing 596/713 atomic regions from SNP 178713 to 179313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,918 DEBUG Processing 162/639 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:44,979 DEBUG Processing 702/831 atomic regions from SNP 210547 to 211147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,074 DEBUG Processing 577/727 atomic regions from SNP 173062 to 173662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,079 DEBUG Processing 579/687 atomic regions from SNP 173628 to 174228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,081 DEBUG Processing 597/713 atomic regions from SNP 179013 to 179613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,149 DEBUG Processing 163/639 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:45,245 DEBUG Processing 703/831 atomic regions from SNP 210847 to 211447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,297 DEBUG Processing 598/713 atomic regions from SNP 179313 to 179913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,312 DEBUG Processing 578/727 atomic regions from SNP 173362 to 173962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,328 DEBUG Processing 580/687 atomic regions from SNP 173928 to 174528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,369 DEBUG Processing 164/639 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:45,514 DEBUG Processing 704/831 atomic regions from SNP 211147 to 211747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,520 DEBUG Processing 599/713 atomic regions from SNP 179613 to 180213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,556 DEBUG Processing 579/727 atomic regions from SNP 173662 to 174262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,587 DEBUG Processing 581/687 atomic regions from SNP 174228 to 174828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,593 DEBUG Processing 165/639 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:45,743 DEBUG Processing 600/713 atomic regions from SNP 179913 to 180513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,776 DEBUG Processing 705/831 atomic regions from SNP 211447 to 212047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,798 DEBUG Processing 580/727 atomic regions from SNP 173962 to 174562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,823 DEBUG Processing 166/639 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:45,833 DEBUG Processing 582/687 atomic regions from SNP 174528 to 175128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,961 DEBUG Processing 601/713 atomic regions from SNP 180213 to 180813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,034 DEBUG Processing 706/831 atomic regions from SNP 211747 to 212347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,039 DEBUG Processing 581/727 atomic regions from SNP 174262 to 174862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,050 DEBUG Processing 167/639 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:46,051 DEBUG Processing 583/687 atomic regions from SNP 174828 to 175428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,179 DEBUG Processing 602/713 atomic regions from SNP 180513 to 181113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,275 DEBUG Processing 584/687 atomic regions from SNP 175128 to 175728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,276 DEBUG Processing 168/639 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:46,280 DEBUG Processing 582/727 atomic regions from SNP 174562 to 175162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,292 DEBUG Processing 707/831 atomic regions from SNP 212047 to 212647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,403 DEBUG Processing 603/713 atomic regions from SNP 180813 to 181413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,505 DEBUG Processing 585/687 atomic regions from SNP 175428 to 176028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,508 DEBUG Processing 169/639 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:46,526 DEBUG Processing 583/727 atomic regions from SNP 174862 to 175462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,558 DEBUG Processing 708/831 atomic regions from SNP 212347 to 212947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,636 DEBUG Processing 604/713 atomic regions from SNP 181113 to 181713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,730 DEBUG Processing 586/687 atomic regions from SNP 175728 to 176328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,743 DEBUG Processing 170/639 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:46,774 DEBUG Processing 584/727 atomic regions from SNP 175162 to 175762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,848 DEBUG Processing 709/831 atomic regions from SNP 212647 to 213247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,858 DEBUG Processing 605/713 atomic regions from SNP 181413 to 182013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,973 DEBUG Processing 171/639 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:46,974 DEBUG Processing 587/687 atomic regions from SNP 176028 to 176628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,022 DEBUG Processing 585/727 atomic regions from SNP 175462 to 176062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,100 DEBUG Processing 606/713 atomic regions from SNP 181713 to 182313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,114 DEBUG Processing 710/831 atomic regions from SNP 212947 to 213547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,195 DEBUG Processing 172/639 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:47,197 DEBUG Processing 588/687 atomic regions from SNP 176328 to 176928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,259 DEBUG Processing 586/727 atomic regions from SNP 175762 to 176362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,316 DEBUG Processing 607/713 atomic regions from SNP 182013 to 182613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,379 DEBUG Processing 711/831 atomic regions from SNP 213247 to 213847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,427 DEBUG Processing 173/639 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:47,428 DEBUG Processing 589/687 atomic regions from SNP 176628 to 177228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,496 DEBUG Processing 587/727 atomic regions from SNP 176062 to 176662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,529 DEBUG Processing 608/713 atomic regions from SNP 182313 to 182913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,640 DEBUG Processing 712/831 atomic regions from SNP 213547 to 214147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,656 DEBUG Processing 590/687 atomic regions from SNP 176928 to 177528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,660 DEBUG Processing 174/639 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:47,743 DEBUG Processing 588/727 atomic regions from SNP 176362 to 176962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,770 DEBUG Processing 609/713 atomic regions from SNP 182613 to 183213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,883 DEBUG Processing 591/687 atomic regions from SNP 177228 to 177828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,890 DEBUG Processing 175/639 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:47,899 DEBUG Processing 713/831 atomic regions from SNP 213847 to 214447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,993 DEBUG Processing 589/727 atomic regions from SNP 176662 to 177262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,001 DEBUG Processing 610/713 atomic regions from SNP 182913 to 183513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,112 DEBUG Processing 592/687 atomic regions from SNP 177528 to 178128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,116 DEBUG Processing 176/639 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:48,180 DEBUG Processing 714/831 atomic regions from SNP 214147 to 214747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,213 DEBUG Processing 611/713 atomic regions from SNP 183213 to 183813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,239 DEBUG Processing 590/727 atomic regions from SNP 176962 to 177562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,303 DEBUG Segmenting atomic regions: 2025-01-31 09:47:48,338 DEBUG Processing 593/687 atomic regions from SNP 177828 to 178428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,344 DEBUG Processing 177/639 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:48,403 DEBUG Processing 1/710 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:48,433 DEBUG Processing 612/713 atomic regions from SNP 183513 to 184113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,461 DEBUG Processing 715/831 atomic regions from SNP 214447 to 215047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,485 DEBUG Processing 591/727 atomic regions from SNP 177262 to 177862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,571 DEBUG Processing 594/687 atomic regions from SNP 178128 to 178728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,580 DEBUG Processing 178/639 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:48,625 DEBUG Processing 2/710 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:48,650 DEBUG Processing 613/713 atomic regions from SNP 183813 to 184413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,729 DEBUG Processing 592/727 atomic regions from SNP 177562 to 178162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,736 DEBUG Processing 716/831 atomic regions from SNP 214747 to 215347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,798 DEBUG Processing 595/687 atomic regions from SNP 178428 to 179028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,817 DEBUG Processing 179/639 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:48,850 DEBUG Processing 3/710 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:48,870 DEBUG Processing 614/713 atomic regions from SNP 184113 to 184713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,977 DEBUG Processing 593/727 atomic regions from SNP 177862 to 178462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,014 DEBUG Processing 717/831 atomic regions from SNP 215047 to 215647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,025 DEBUG Processing 596/687 atomic regions from SNP 178728 to 179328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,040 DEBUG Processing 180/639 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:49,075 DEBUG Processing 4/710 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,090 DEBUG Processing 615/713 atomic regions from SNP 184413 to 185013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,228 DEBUG Processing 594/727 atomic regions from SNP 178162 to 178762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,244 DEBUG Processing 597/687 atomic regions from SNP 179028 to 179628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,271 DEBUG Processing 181/639 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:49,277 DEBUG Processing 718/831 atomic regions from SNP 215347 to 215947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,299 DEBUG Processing 5/710 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,308 DEBUG Processing 616/713 atomic regions from SNP 184713 to 185313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,458 DEBUG Processing 598/687 atomic regions from SNP 179328 to 179928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,470 DEBUG Processing 595/727 atomic regions from SNP 178462 to 179062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,501 DEBUG Processing 182/639 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:49,519 DEBUG Processing 6/710 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,527 DEBUG Processing 617/713 atomic regions from SNP 185013 to 185613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,542 DEBUG Processing 719/831 atomic regions from SNP 215647 to 216247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,680 DEBUG Processing 599/687 atomic regions from SNP 179628 to 180228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,706 DEBUG Processing 596/727 atomic regions from SNP 178762 to 179362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,723 DEBUG Processing 183/639 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:49,735 DEBUG Processing 7/710 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:49,738 DEBUG Processing 618/713 atomic regions from SNP 185313 to 185913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,797 DEBUG Processing 720/831 atomic regions from SNP 215947 to 216547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,918 DEBUG Processing 600/687 atomic regions from SNP 179928 to 180528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,947 DEBUG Processing 184/639 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:49,948 DEBUG Processing 597/727 atomic regions from SNP 179062 to 179662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,952 DEBUG Processing 619/713 atomic regions from SNP 185613 to 186213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,955 DEBUG Processing 8/710 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,044 DEBUG Processing 721/831 atomic regions from SNP 216247 to 216847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,147 DEBUG Processing 601/687 atomic regions from SNP 180228 to 180828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,173 DEBUG Processing 620/713 atomic regions from SNP 185913 to 186513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,179 DEBUG Processing 9/710 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,181 DEBUG Processing 185/639 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:50,197 DEBUG Processing 598/727 atomic regions from SNP 179362 to 179962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,294 DEBUG Processing 722/831 atomic regions from SNP 216547 to 217147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,370 DEBUG Processing 602/687 atomic regions from SNP 180528 to 181128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,387 DEBUG Processing 621/713 atomic regions from SNP 186213 to 186813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,398 DEBUG Processing 10/710 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,411 DEBUG Processing 186/639 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:50,443 DEBUG Processing 599/727 atomic regions from SNP 179662 to 180262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,548 DEBUG Processing 723/831 atomic regions from SNP 216847 to 217447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,590 DEBUG Processing 603/687 atomic regions from SNP 180828 to 181428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,599 DEBUG Processing 622/713 atomic regions from SNP 186513 to 187113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,614 DEBUG Processing 11/710 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,632 DEBUG Processing 187/639 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:50,682 DEBUG Processing 600/727 atomic regions from SNP 179962 to 180562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,805 DEBUG Processing 724/831 atomic regions from SNP 217147 to 217747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,817 DEBUG Processing 604/687 atomic regions from SNP 181128 to 181728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,818 DEBUG Processing 623/713 atomic regions from SNP 186813 to 187413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,838 DEBUG Processing 12/710 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:50,856 DEBUG Processing 188/639 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:50,919 DEBUG Processing 601/727 atomic regions from SNP 180262 to 180862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,040 DEBUG Processing 624/713 atomic regions from SNP 187113 to 187713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,046 DEBUG Processing 605/687 atomic regions from SNP 181428 to 182028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,062 DEBUG Processing 725/831 atomic regions from SNP 217447 to 218047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,067 DEBUG Processing 13/710 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,082 DEBUG Processing 189/639 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:51,151 DEBUG Processing 602/727 atomic regions from SNP 180562 to 181162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,253 DEBUG Processing 625/713 atomic regions from SNP 187413 to 188013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,271 DEBUG Processing 606/687 atomic regions from SNP 181728 to 182328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,292 DEBUG Processing 14/710 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,312 DEBUG Processing 190/639 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:51,317 DEBUG Processing 726/831 atomic regions from SNP 217747 to 218347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,392 DEBUG Processing 603/727 atomic regions from SNP 180862 to 181462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,466 DEBUG Processing 626/713 atomic regions from SNP 187713 to 188313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,494 DEBUG Processing 607/687 atomic regions from SNP 182028 to 182628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,514 DEBUG Processing 15/710 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,535 DEBUG Processing 191/639 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:51,573 DEBUG Processing 727/831 atomic regions from SNP 218047 to 218647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,630 DEBUG Processing 604/727 atomic regions from SNP 181162 to 181762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,683 DEBUG Processing 627/713 atomic regions from SNP 188013 to 188613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,720 DEBUG Processing 608/687 atomic regions from SNP 182328 to 182928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,736 DEBUG Processing 16/710 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,761 DEBUG Processing 192/639 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:51,827 DEBUG Processing 728/831 atomic regions from SNP 218347 to 218947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,867 DEBUG Processing 605/727 atomic regions from SNP 181462 to 182062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,902 DEBUG Processing 628/713 atomic regions from SNP 188313 to 188913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,946 DEBUG Processing 609/687 atomic regions from SNP 182628 to 183228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,961 DEBUG Processing 17/710 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:51,982 DEBUG Processing 193/639 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:52,080 DEBUG Processing 729/831 atomic regions from SNP 218647 to 219247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,100 DEBUG Processing 606/727 atomic regions from SNP 181762 to 182362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,114 DEBUG Processing 629/713 atomic regions from SNP 188613 to 189213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,170 DEBUG Processing 610/687 atomic regions from SNP 182928 to 183528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,183 DEBUG Processing 18/710 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,203 DEBUG Processing 194/639 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:52,324 DEBUG Processing 630/713 atomic regions from SNP 188913 to 189513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,329 DEBUG Processing 730/831 atomic regions from SNP 218947 to 219547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,334 DEBUG Processing 607/727 atomic regions from SNP 182062 to 182662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,402 DEBUG Processing 611/687 atomic regions from SNP 183228 to 183828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,408 DEBUG Processing 19/710 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,428 DEBUG Processing 195/639 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:52,532 DEBUG Processing 631/713 atomic regions from SNP 189213 to 189813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,565 DEBUG Processing 608/727 atomic regions from SNP 182362 to 182962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,578 DEBUG Processing 731/831 atomic regions from SNP 219247 to 219847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,626 DEBUG Processing 612/687 atomic regions from SNP 183528 to 184128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,630 DEBUG Processing 20/710 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,651 DEBUG Processing 196/639 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:52,742 DEBUG Processing 632/713 atomic regions from SNP 189513 to 190113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,805 DEBUG Processing 609/727 atomic regions from SNP 182662 to 183262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,835 DEBUG Processing 732/831 atomic regions from SNP 219547 to 220147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,845 DEBUG Processing 613/687 atomic regions from SNP 183828 to 184428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,846 DEBUG Processing 21/710 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:52,871 DEBUG Processing 197/639 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:52,953 DEBUG Processing 633/713 atomic regions from SNP 189813 to 190413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,052 DEBUG Processing 610/727 atomic regions from SNP 182962 to 183562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,062 DEBUG Processing 22/710 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,082 DEBUG Processing 614/687 atomic regions from SNP 184128 to 184728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,098 DEBUG Processing 733/831 atomic regions from SNP 219847 to 220447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,099 DEBUG Processing 198/639 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:53,162 DEBUG Processing 634/713 atomic regions from SNP 190113 to 190713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,276 DEBUG Processing 23/710 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,299 DEBUG Processing 611/727 atomic regions from SNP 183262 to 183862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,302 DEBUG Processing 615/687 atomic regions from SNP 184428 to 185028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,334 DEBUG Processing 199/639 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:53,364 DEBUG Processing 734/831 atomic regions from SNP 220147 to 220747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,373 DEBUG Processing 635/713 atomic regions from SNP 190413 to 191013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,491 DEBUG Processing 24/710 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,523 DEBUG Processing 616/687 atomic regions from SNP 184728 to 185328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,533 DEBUG Processing 612/727 atomic regions from SNP 183562 to 184162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,559 DEBUG Processing 200/639 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:53,583 DEBUG Processing 636/713 atomic regions from SNP 190713 to 191313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,621 DEBUG Processing 735/831 atomic regions from SNP 220447 to 221047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,714 DEBUG Processing 25/710 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:53,765 DEBUG Processing 617/687 atomic regions from SNP 185028 to 185628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,774 DEBUG Processing 613/727 atomic regions from SNP 183862 to 184462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,783 DEBUG Processing 201/639 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:53,794 DEBUG Processing 637/713 atomic regions from SNP 191013 to 191613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,876 DEBUG Processing 736/831 atomic regions from SNP 220747 to 221347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,940 DEBUG Processing 26/710 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,013 DEBUG Processing 618/687 atomic regions from SNP 185328 to 185928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,019 DEBUG Processing 614/727 atomic regions from SNP 184162 to 184762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,023 DEBUG Processing 202/639 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:54,033 DEBUG Processing 638/713 atomic regions from SNP 191313 to 191913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,117 DEBUG Processing 737/831 atomic regions from SNP 221047 to 221647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,154 DEBUG Processing 27/710 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,239 DEBUG Processing 619/687 atomic regions from SNP 185628 to 186228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,265 DEBUG Processing 615/727 atomic regions from SNP 184462 to 185062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,272 DEBUG Processing 639/713 atomic regions from SNP 191613 to 192213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,274 DEBUG Processing 203/639 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:54,367 DEBUG Processing 28/710 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,374 DEBUG Processing 738/831 atomic regions from SNP 221347 to 221947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,457 DEBUG Processing 620/687 atomic regions from SNP 185928 to 186528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,498 DEBUG Processing 204/639 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:54,500 DEBUG Processing 616/727 atomic regions from SNP 184762 to 185362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,505 DEBUG Processing 640/713 atomic regions from SNP 191913 to 192513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,581 DEBUG Processing 29/710 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,625 DEBUG Processing 739/831 atomic regions from SNP 221647 to 222247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,682 DEBUG Processing 621/687 atomic regions from SNP 186228 to 186828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,723 DEBUG Processing 205/639 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:54,731 DEBUG Processing 641/713 atomic regions from SNP 192213 to 192813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,738 DEBUG Processing 617/727 atomic regions from SNP 185062 to 185662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,798 DEBUG Processing 30/710 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:54,877 DEBUG Processing 740/831 atomic regions from SNP 221947 to 222547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,913 DEBUG Processing 622/687 atomic regions from SNP 186528 to 187128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,951 DEBUG Processing 642/713 atomic regions from SNP 192513 to 193113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,952 DEBUG Processing 206/639 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:54,983 DEBUG Processing 618/727 atomic regions from SNP 185362 to 185962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,012 DEBUG Processing 31/710 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,129 DEBUG Processing 741/831 atomic regions from SNP 222247 to 222847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,144 DEBUG Processing 623/687 atomic regions from SNP 186828 to 187428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,173 DEBUG Processing 643/713 atomic regions from SNP 192813 to 193413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,182 DEBUG Processing 207/639 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:55,225 DEBUG Processing 619/727 atomic regions from SNP 185662 to 186262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,232 DEBUG Processing 32/710 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,367 DEBUG Processing 624/687 atomic regions from SNP 187128 to 187728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,383 DEBUG Processing 742/831 atomic regions from SNP 222547 to 223147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,394 DEBUG Processing 644/713 atomic regions from SNP 193113 to 193713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,417 DEBUG Processing 208/639 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:55,461 DEBUG Processing 33/710 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,469 DEBUG Processing 620/727 atomic regions from SNP 185962 to 186562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,582 DEBUG Processing 625/687 atomic regions from SNP 187428 to 188028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,608 DEBUG Processing 645/713 atomic regions from SNP 193413 to 194013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,627 DEBUG Processing 743/831 atomic regions from SNP 222847 to 223447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,652 DEBUG Processing 209/639 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:55,694 DEBUG Processing 34/710 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,719 DEBUG Processing 621/727 atomic regions from SNP 186262 to 186862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,796 DEBUG Processing 626/687 atomic regions from SNP 187728 to 188328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,818 DEBUG Processing 646/713 atomic regions from SNP 193713 to 194313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,875 DEBUG Processing 744/831 atomic regions from SNP 223147 to 223747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,879 DEBUG Processing 210/639 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:55,924 DEBUG Processing 35/710 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:55,964 DEBUG Processing 622/727 atomic regions from SNP 186562 to 187162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,019 DEBUG Processing 627/687 atomic regions from SNP 188028 to 188628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,032 DEBUG Processing 647/713 atomic regions from SNP 194013 to 194613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,098 DEBUG Processing 211/639 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:56,131 DEBUG Processing 745/831 atomic regions from SNP 223447 to 224047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,143 DEBUG Processing 36/710 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,203 DEBUG Processing 623/727 atomic regions from SNP 186862 to 187462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,242 DEBUG Processing 628/687 atomic regions from SNP 188328 to 188928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,248 DEBUG Processing 648/713 atomic regions from SNP 194313 to 194913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,328 DEBUG Processing 212/639 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:56,361 DEBUG Processing 37/710 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,415 DEBUG Processing 746/831 atomic regions from SNP 223747 to 224347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,434 DEBUG Processing 624/727 atomic regions from SNP 187162 to 187762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,463 DEBUG Processing 629/687 atomic regions from SNP 188628 to 189228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,467 DEBUG Processing 649/713 atomic regions from SNP 194613 to 195213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,546 DEBUG Processing 213/639 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:56,586 DEBUG Processing 38/710 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,665 DEBUG Processing 625/727 atomic regions from SNP 187462 to 188062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,679 DEBUG Processing 650/713 atomic regions from SNP 194913 to 195513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,681 DEBUG Processing 747/831 atomic regions from SNP 224047 to 224647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,694 DEBUG Processing 630/687 atomic regions from SNP 188928 to 189528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,756 DEBUG Processing 214/639 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:56,806 DEBUG Processing 39/710 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:56,894 DEBUG Processing 651/713 atomic regions from SNP 195213 to 195813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,900 DEBUG Processing 626/727 atomic regions from SNP 187762 to 188362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,915 DEBUG Processing 631/687 atomic regions from SNP 189228 to 189828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,928 DEBUG Processing 748/831 atomic regions from SNP 224347 to 224947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,974 DEBUG Processing 215/639 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:57,022 DEBUG Processing 40/710 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,110 DEBUG Processing 652/713 atomic regions from SNP 195513 to 196113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,120 DEBUG Processing 627/727 atomic regions from SNP 188062 to 188662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,138 DEBUG Processing 632/687 atomic regions from SNP 189528 to 190128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,169 DEBUG Processing 749/831 atomic regions from SNP 224647 to 225247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,199 DEBUG Processing 216/639 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:57,238 DEBUG Processing 41/710 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,333 DEBUG Processing 653/713 atomic regions from SNP 195813 to 196413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,333 DEBUG Processing 628/727 atomic regions from SNP 188362 to 188962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,358 DEBUG Processing 633/687 atomic regions from SNP 189828 to 190428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,407 DEBUG Processing 750/831 atomic regions from SNP 224947 to 225547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,413 DEBUG Processing 217/639 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:57,454 DEBUG Processing 42/710 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,554 DEBUG Processing 629/727 atomic regions from SNP 188662 to 189262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,578 DEBUG Processing 654/713 atomic regions from SNP 196113 to 196713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,579 DEBUG Processing 634/687 atomic regions from SNP 190128 to 190728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,627 DEBUG Processing 218/639 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:57,650 DEBUG Processing 751/831 atomic regions from SNP 225247 to 225847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,679 DEBUG Processing 43/710 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,779 DEBUG Processing 630/727 atomic regions from SNP 188962 to 189562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,797 DEBUG Processing 635/687 atomic regions from SNP 190428 to 191028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,819 DEBUG Processing 655/713 atomic regions from SNP 196413 to 197013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,843 DEBUG Processing 219/639 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:57,897 DEBUG Processing 44/710 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:57,899 DEBUG Processing 752/831 atomic regions from SNP 225547 to 226147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,006 DEBUG Processing 631/727 atomic regions from SNP 189262 to 189862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,018 DEBUG Processing 636/687 atomic regions from SNP 190728 to 191328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,048 DEBUG Processing 656/713 atomic regions from SNP 196713 to 197313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,066 DEBUG Processing 220/639 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:58,113 DEBUG Processing 45/710 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,148 DEBUG Processing 753/831 atomic regions from SNP 225847 to 226447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,229 DEBUG Processing 632/727 atomic regions from SNP 189562 to 190162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,243 DEBUG Processing 637/687 atomic regions from SNP 191028 to 191628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,290 DEBUG Processing 221/639 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:58,291 DEBUG Processing 657/713 atomic regions from SNP 197013 to 197613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,333 DEBUG Processing 46/710 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,404 DEBUG Processing 754/831 atomic regions from SNP 226147 to 226747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,464 DEBUG Processing 633/727 atomic regions from SNP 189862 to 190462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,467 DEBUG Processing 638/687 atomic regions from SNP 191328 to 191928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,513 DEBUG Processing 222/639 atomic regions from SNP 66521 to 67122 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:58,530 DEBUG Processing 658/713 atomic regions from SNP 197313 to 197913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,558 DEBUG Processing 47/710 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,654 DEBUG Processing 755/831 atomic regions from SNP 226447 to 227047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,688 DEBUG Processing 639/687 atomic regions from SNP 191628 to 192228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,698 DEBUG Processing 634/727 atomic regions from SNP 190162 to 190762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,733 DEBUG Processing 223/639 atomic regions from SNP 66822 to 67423 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:58,782 DEBUG Processing 659/713 atomic regions from SNP 197613 to 198213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,782 DEBUG Processing 48/710 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:58,909 DEBUG Processing 756/831 atomic regions from SNP 226747 to 227347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,915 DEBUG Processing 640/687 atomic regions from SNP 191928 to 192528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,938 DEBUG Processing 635/727 atomic regions from SNP 190462 to 191062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,961 DEBUG Processing 224/639 atomic regions from SNP 67123 to 67724 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:59,000 DEBUG Processing 49/710 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,037 DEBUG Processing 660/713 atomic regions from SNP 197913 to 198513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,142 DEBUG Processing 641/687 atomic regions from SNP 192228 to 192828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,157 DEBUG Processing 757/831 atomic regions from SNP 227047 to 227647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,169 DEBUG Processing 636/727 atomic regions from SNP 190762 to 191362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,183 DEBUG Processing 225/639 atomic regions from SNP 67424 to 68025 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:59,217 DEBUG Processing 50/710 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,285 DEBUG Processing 661/713 atomic regions from SNP 198213 to 198813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,363 DEBUG Processing 642/687 atomic regions from SNP 192528 to 193128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,407 DEBUG Processing 226/639 atomic regions from SNP 67725 to 68326 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:59,408 DEBUG Processing 637/727 atomic regions from SNP 191062 to 191662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,430 DEBUG Processing 758/831 atomic regions from SNP 227347 to 227947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,438 DEBUG Processing 51/710 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,525 DEBUG Processing 662/713 atomic regions from SNP 198513 to 199113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,580 DEBUG Processing 643/687 atomic regions from SNP 192828 to 193428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,634 DEBUG Processing 227/639 atomic regions from SNP 68026 to 68627 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:59,646 DEBUG Processing 638/727 atomic regions from SNP 191362 to 191962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,664 DEBUG Processing 52/710 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,688 DEBUG Processing 759/831 atomic regions from SNP 227647 to 228247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,741 DEBUG Processing 663/713 atomic regions from SNP 198813 to 199413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,794 DEBUG Processing 644/687 atomic regions from SNP 193128 to 193728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,855 DEBUG Processing 228/639 atomic regions from SNP 68327 to 68928 for chr14 (subchromosome 3 of 3). 2025-01-31 09:47:59,891 DEBUG Processing 53/710 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:47:59,893 DEBUG Processing 639/727 atomic regions from SNP 191662 to 192262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,944 DEBUG Processing 760/831 atomic regions from SNP 227947 to 228547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,952 DEBUG Processing 664/713 atomic regions from SNP 199113 to 199713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,009 DEBUG Processing 645/687 atomic regions from SNP 193428 to 194028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,074 DEBUG Processing 229/639 atomic regions from SNP 68628 to 69229 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:00,115 DEBUG Processing 54/710 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,144 DEBUG Processing 640/727 atomic regions from SNP 191962 to 192562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,170 DEBUG Processing 665/713 atomic regions from SNP 199413 to 200013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,198 DEBUG Processing 761/831 atomic regions from SNP 228247 to 228847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,229 DEBUG Processing 646/687 atomic regions from SNP 193728 to 194328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,294 DEBUG Processing 230/639 atomic regions from SNP 68929 to 69530 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:00,337 DEBUG Processing 55/710 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,381 DEBUG Processing 641/727 atomic regions from SNP 192262 to 192862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,386 DEBUG Processing 666/713 atomic regions from SNP 199713 to 200313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,445 DEBUG Processing 762/831 atomic regions from SNP 228547 to 229147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,454 DEBUG Processing 647/687 atomic regions from SNP 194028 to 194628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,513 DEBUG Processing 231/639 atomic regions from SNP 69230 to 69831 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:00,553 DEBUG Processing 56/710 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,614 DEBUG Processing 642/727 atomic regions from SNP 192562 to 193162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,623 DEBUG Processing 667/713 atomic regions from SNP 200013 to 200613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,679 DEBUG Processing 648/687 atomic regions from SNP 194328 to 194928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,696 DEBUG Processing 763/831 atomic regions from SNP 228847 to 229447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,733 DEBUG Processing 232/639 atomic regions from SNP 69531 to 70132 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:00,765 DEBUG Processing 57/710 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:00,847 DEBUG Processing 643/727 atomic regions from SNP 192862 to 193462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,870 DEBUG Processing 668/713 atomic regions from SNP 200313 to 200913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,905 DEBUG Processing 649/687 atomic regions from SNP 194628 to 195228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,954 DEBUG Processing 764/831 atomic regions from SNP 229147 to 229747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,963 DEBUG Processing 233/639 atomic regions from SNP 69832 to 70433 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:00,988 DEBUG Processing 58/710 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,077 DEBUG Processing 644/727 atomic regions from SNP 193162 to 193762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,112 DEBUG Processing 669/713 atomic regions from SNP 200613 to 201213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,125 DEBUG Processing 650/687 atomic regions from SNP 194928 to 195528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,202 DEBUG Processing 234/639 atomic regions from SNP 70133 to 70734 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:01,212 DEBUG Processing 765/831 atomic regions from SNP 229447 to 230047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,214 DEBUG Processing 59/710 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,310 DEBUG Processing 645/727 atomic regions from SNP 193462 to 194062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,343 DEBUG Processing 651/687 atomic regions from SNP 195228 to 195828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,359 DEBUG Processing 670/713 atomic regions from SNP 200913 to 201513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,435 DEBUG Processing 60/710 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,454 DEBUG Processing 235/639 atomic regions from SNP 70434 to 71035 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:01,467 DEBUG Processing 766/831 atomic regions from SNP 229747 to 230347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,553 DEBUG Processing 646/727 atomic regions from SNP 193762 to 194362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,570 DEBUG Processing 652/687 atomic regions from SNP 195528 to 196128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,589 DEBUG Processing 671/713 atomic regions from SNP 201213 to 201813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,655 DEBUG Processing 61/710 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,701 DEBUG Processing 236/639 atomic regions from SNP 70735 to 71336 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:01,729 DEBUG Processing 767/831 atomic regions from SNP 230047 to 230647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,797 DEBUG Processing 647/727 atomic regions from SNP 194062 to 194662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,801 DEBUG Processing 653/687 atomic regions from SNP 195828 to 196428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,841 DEBUG Processing 672/713 atomic regions from SNP 201513 to 202113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,872 DEBUG Processing 62/710 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:01,920 DEBUG Processing 237/639 atomic regions from SNP 71036 to 71637 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:01,988 DEBUG Processing 768/831 atomic regions from SNP 230347 to 230947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,033 DEBUG Processing 654/687 atomic regions from SNP 196128 to 196728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,046 DEBUG Processing 648/727 atomic regions from SNP 194362 to 194962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,093 DEBUG Processing 63/710 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,098 DEBUG Processing 673/713 atomic regions from SNP 201813 to 202413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,137 DEBUG Processing 238/639 atomic regions from SNP 71337 to 71938 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:02,246 DEBUG Processing 769/831 atomic regions from SNP 230647 to 231247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,260 DEBUG Processing 655/687 atomic regions from SNP 196428 to 197028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,291 DEBUG Processing 649/727 atomic regions from SNP 194662 to 195262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,314 DEBUG Processing 64/710 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,352 DEBUG Processing 239/639 atomic regions from SNP 71638 to 72239 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:02,353 DEBUG Processing 674/713 atomic regions from SNP 202113 to 202713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,487 DEBUG Processing 656/687 atomic regions from SNP 196728 to 197328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,506 DEBUG Processing 770/831 atomic regions from SNP 230947 to 231547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,539 DEBUG Processing 65/710 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,553 DEBUG Processing 650/727 atomic regions from SNP 194962 to 195562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,575 DEBUG Processing 240/639 atomic regions from SNP 71939 to 72540 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:02,604 DEBUG Processing 675/713 atomic regions from SNP 202413 to 203013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,732 DEBUG Processing 657/687 atomic regions from SNP 197028 to 197628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,768 DEBUG Processing 66/710 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:02,770 DEBUG Processing 771/831 atomic regions from SNP 231247 to 231847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,801 DEBUG Processing 651/727 atomic regions from SNP 195262 to 195862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,843 DEBUG Processing 241/639 atomic regions from SNP 72240 to 72841 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:02,847 DEBUG Processing 676/713 atomic regions from SNP 202713 to 203313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,959 DEBUG Processing 658/687 atomic regions from SNP 197328 to 197928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,992 DEBUG Processing 67/710 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,033 DEBUG Processing 772/831 atomic regions from SNP 231547 to 232147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,046 DEBUG Processing 652/727 atomic regions from SNP 195562 to 196162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,097 DEBUG Processing 677/713 atomic regions from SNP 203013 to 203613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,102 DEBUG Processing 242/639 atomic regions from SNP 72541 to 73142 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:03,181 DEBUG Processing 659/687 atomic regions from SNP 197628 to 198228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,207 DEBUG Processing 68/710 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,289 DEBUG Processing 653/727 atomic regions from SNP 195862 to 196462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,289 DEBUG Processing 773/831 atomic regions from SNP 231847 to 232447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,346 DEBUG Processing 243/639 atomic regions from SNP 72842 to 73443 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:03,352 DEBUG Processing 678/713 atomic regions from SNP 203313 to 203913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,411 DEBUG Processing 660/687 atomic regions from SNP 197928 to 198528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,427 DEBUG Processing 69/710 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,541 DEBUG Processing 774/831 atomic regions from SNP 232147 to 232747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,545 DEBUG Processing 654/727 atomic regions from SNP 196162 to 196762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,576 DEBUG Processing 244/639 atomic regions from SNP 73143 to 73744 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:03,607 DEBUG Processing 679/713 atomic regions from SNP 203613 to 204213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,657 DEBUG Processing 70/710 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,665 DEBUG Processing 661/687 atomic regions from SNP 198228 to 198828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,794 DEBUG Processing 775/831 atomic regions from SNP 232447 to 233047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,796 DEBUG Processing 655/727 atomic regions from SNP 196462 to 197062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,799 DEBUG Processing 245/639 atomic regions from SNP 73444 to 74045 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:03,858 DEBUG Processing 680/713 atomic regions from SNP 203913 to 204513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,887 DEBUG Processing 71/710 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:03,915 DEBUG Processing 662/687 atomic regions from SNP 198528 to 199128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,024 DEBUG Processing 246/639 atomic regions from SNP 73745 to 74346 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:04,032 DEBUG Processing 656/727 atomic regions from SNP 196762 to 197362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,046 DEBUG Processing 776/831 atomic regions from SNP 232747 to 233347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,106 DEBUG Processing 681/713 atomic regions from SNP 204213 to 204813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,113 DEBUG Processing 72/710 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,177 DEBUG Processing 663/687 atomic regions from SNP 198828 to 199428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,265 DEBUG Processing 247/639 atomic regions from SNP 74046 to 74647 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:04,276 DEBUG Processing 657/727 atomic regions from SNP 197062 to 197662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,304 DEBUG Processing 777/831 atomic regions from SNP 233047 to 233647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,337 DEBUG Processing 73/710 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,360 DEBUG Processing 682/713 atomic regions from SNP 204513 to 205113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,431 DEBUG Processing 664/687 atomic regions from SNP 199128 to 199728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,496 DEBUG Processing 248/639 atomic regions from SNP 74347 to 74948 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:04,522 DEBUG Processing 658/727 atomic regions from SNP 197362 to 197962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,558 DEBUG Processing 74/710 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,564 DEBUG Processing 778/831 atomic regions from SNP 233347 to 233947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,601 DEBUG Processing 683/713 atomic regions from SNP 204813 to 205413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,690 DEBUG Processing 665/687 atomic regions from SNP 199428 to 200028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,726 DEBUG Processing 249/639 atomic regions from SNP 74648 to 75249 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:04,768 DEBUG Processing 659/727 atomic regions from SNP 197662 to 198262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,776 DEBUG Processing 75/710 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:04,825 DEBUG Processing 779/831 atomic regions from SNP 233647 to 234247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,836 DEBUG Processing 684/713 atomic regions from SNP 205113 to 205713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,932 DEBUG Processing 666/687 atomic regions from SNP 199728 to 200328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,954 DEBUG Processing 250/639 atomic regions from SNP 74949 to 75550 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:04,998 DEBUG Processing 76/710 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,008 DEBUG Processing 660/727 atomic regions from SNP 197962 to 198562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,067 DEBUG Processing 685/713 atomic regions from SNP 205413 to 206013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,075 DEBUG Processing 780/831 atomic regions from SNP 233947 to 234547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,159 DEBUG Processing 667/687 atomic regions from SNP 200028 to 200628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,200 DEBUG Processing 251/639 atomic regions from SNP 75250 to 75851 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:05,221 DEBUG Processing 77/710 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,245 DEBUG Processing 661/727 atomic regions from SNP 198262 to 198862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,294 DEBUG Processing 686/713 atomic regions from SNP 205713 to 206313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,323 DEBUG Processing 781/831 atomic regions from SNP 234247 to 234847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,381 DEBUG Processing 668/687 atomic regions from SNP 200328 to 200928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,442 DEBUG Processing 78/710 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,457 DEBUG Processing 252/639 atomic regions from SNP 75551 to 76152 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:05,498 DEBUG Processing 662/727 atomic regions from SNP 198562 to 199162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,514 DEBUG Processing 687/713 atomic regions from SNP 206013 to 206613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,571 DEBUG Processing 782/831 atomic regions from SNP 234547 to 235147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,605 DEBUG Processing 669/687 atomic regions from SNP 200628 to 201228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,659 DEBUG Processing 79/710 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,711 DEBUG Processing 253/639 atomic regions from SNP 75852 to 76453 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:05,746 DEBUG Processing 663/727 atomic regions from SNP 198862 to 199462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,756 DEBUG Processing 688/713 atomic regions from SNP 206313 to 206913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,826 DEBUG Processing 783/831 atomic regions from SNP 234847 to 235447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,830 DEBUG Processing 670/687 atomic regions from SNP 200928 to 201528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,881 DEBUG Processing 80/710 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:05,957 DEBUG Processing 254/639 atomic regions from SNP 76153 to 76754 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:05,977 DEBUG Processing 689/713 atomic regions from SNP 206613 to 207213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,993 DEBUG Processing 664/727 atomic regions from SNP 199162 to 199762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,071 DEBUG Processing 671/687 atomic regions from SNP 201228 to 201828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,084 DEBUG Processing 784/831 atomic regions from SNP 235147 to 235747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,104 DEBUG Processing 81/710 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,185 DEBUG Processing 690/713 atomic regions from SNP 206913 to 207513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,200 DEBUG Processing 255/639 atomic regions from SNP 76454 to 77055 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:06,235 DEBUG Processing 665/727 atomic regions from SNP 199462 to 200062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,307 DEBUG Processing 672/687 atomic regions from SNP 201528 to 202128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,336 DEBUG Processing 82/710 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,354 DEBUG Processing 785/831 atomic regions from SNP 235447 to 236047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,397 DEBUG Processing 691/713 atomic regions from SNP 207213 to 207813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,424 DEBUG Processing 256/639 atomic regions from SNP 76755 to 77356 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:06,462 DEBUG Processing 666/727 atomic regions from SNP 199762 to 200362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,539 DEBUG Processing 673/687 atomic regions from SNP 201828 to 202428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,566 DEBUG Processing 83/710 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,619 DEBUG Processing 786/831 atomic regions from SNP 235747 to 236347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,620 DEBUG Processing 692/713 atomic regions from SNP 207513 to 208113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,661 DEBUG Processing 257/639 atomic regions from SNP 77056 to 77657 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:06,697 DEBUG Processing 667/727 atomic regions from SNP 200062 to 200662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,757 DEBUG Processing 674/687 atomic regions from SNP 202128 to 202728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,785 DEBUG Processing 84/710 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:06,847 DEBUG Processing 693/713 atomic regions from SNP 207813 to 208413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,884 DEBUG Processing 787/831 atomic regions from SNP 236047 to 236647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,930 DEBUG Processing 258/639 atomic regions from SNP 77357 to 77958 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:06,940 DEBUG Processing 668/727 atomic regions from SNP 200362 to 200962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,977 DEBUG Processing 675/687 atomic regions from SNP 202428 to 203028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,001 DEBUG Processing 85/710 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,063 DEBUG Processing 694/713 atomic regions from SNP 208113 to 208713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,142 DEBUG Processing 788/831 atomic regions from SNP 236347 to 236947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,175 DEBUG Processing 669/727 atomic regions from SNP 200662 to 201262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,183 DEBUG Processing 259/639 atomic regions from SNP 77658 to 78259 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:07,205 DEBUG Processing 676/687 atomic regions from SNP 202728 to 203328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,224 DEBUG Processing 86/710 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,276 DEBUG Processing 695/713 atomic regions from SNP 208413 to 209013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,389 DEBUG Processing 789/831 atomic regions from SNP 236647 to 237247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,409 DEBUG Processing 670/727 atomic regions from SNP 200962 to 201562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,412 DEBUG Processing 260/639 atomic regions from SNP 77959 to 78560 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:07,432 DEBUG Processing 677/687 atomic regions from SNP 203028 to 203628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,451 DEBUG Processing 87/710 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,499 DEBUG Processing 696/713 atomic regions from SNP 208713 to 209313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,635 DEBUG Processing 261/639 atomic regions from SNP 78260 to 78861 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:07,642 DEBUG Processing 790/831 atomic regions from SNP 236947 to 237547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,646 DEBUG Processing 671/727 atomic regions from SNP 201262 to 201862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,656 DEBUG Processing 678/687 atomic regions from SNP 203328 to 203928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,674 DEBUG Processing 88/710 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,721 DEBUG Processing 697/713 atomic regions from SNP 209013 to 209613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,862 DEBUG Processing 262/639 atomic regions from SNP 78561 to 79162 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:07,879 DEBUG Processing 679/687 atomic regions from SNP 203628 to 204228 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,885 DEBUG Processing 672/727 atomic regions from SNP 201562 to 202162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,890 DEBUG Processing 89/710 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:07,900 DEBUG Processing 791/831 atomic regions from SNP 237247 to 237847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,944 DEBUG Processing 698/713 atomic regions from SNP 209313 to 209913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,101 DEBUG Processing 263/639 atomic regions from SNP 78862 to 79463 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:08,110 DEBUG Processing 680/687 atomic regions from SNP 203928 to 204528 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,115 DEBUG Processing 90/710 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,136 DEBUG Processing 673/727 atomic regions from SNP 201862 to 202462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,162 DEBUG Processing 792/831 atomic regions from SNP 237547 to 238147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,187 DEBUG Processing 699/713 atomic regions from SNP 209613 to 210213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,337 DEBUG Processing 681/687 atomic regions from SNP 204228 to 204828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,339 DEBUG Processing 91/710 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,357 DEBUG Processing 264/639 atomic regions from SNP 79163 to 79764 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:08,385 DEBUG Processing 674/727 atomic regions from SNP 202162 to 202762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,409 DEBUG Processing 700/713 atomic regions from SNP 209913 to 210513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,423 DEBUG Processing 793/831 atomic regions from SNP 237847 to 238447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,558 DEBUG Processing 682/687 atomic regions from SNP 204528 to 205128 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,558 DEBUG Processing 92/710 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,593 DEBUG Processing 265/639 atomic regions from SNP 79464 to 80065 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:08,626 DEBUG Processing 675/727 atomic regions from SNP 202462 to 203062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,650 DEBUG Processing 701/713 atomic regions from SNP 210213 to 210813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,681 DEBUG Processing 794/831 atomic regions from SNP 238147 to 238747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,775 DEBUG Processing 93/710 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:08,780 DEBUG Processing 683/687 atomic regions from SNP 204828 to 205428 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,813 DEBUG Processing 266/639 atomic regions from SNP 79765 to 80366 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:08,857 DEBUG Processing 676/727 atomic regions from SNP 202762 to 203362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,864 DEBUG Processing 702/713 atomic regions from SNP 210513 to 211113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,935 DEBUG Processing 795/831 atomic regions from SNP 238447 to 239047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,000 DEBUG Processing 94/710 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,008 DEBUG Processing 684/687 atomic regions from SNP 205128 to 205728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,032 DEBUG Processing 267/639 atomic regions from SNP 80066 to 80667 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:09,076 DEBUG Processing 703/713 atomic regions from SNP 210813 to 211413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,089 DEBUG Processing 677/727 atomic regions from SNP 203062 to 203662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,178 DEBUG Processing 796/831 atomic regions from SNP 238747 to 239347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,239 DEBUG Processing 685/687 atomic regions from SNP 205428 to 206028 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,244 DEBUG Processing 95/710 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,261 DEBUG Processing 268/639 atomic regions from SNP 80367 to 80968 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:09,303 DEBUG Processing 704/713 atomic regions from SNP 211113 to 211713 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,332 DEBUG Processing 678/727 atomic regions from SNP 203362 to 203962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,428 DEBUG Processing 797/831 atomic regions from SNP 239047 to 239647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,464 DEBUG Processing 686/687 atomic regions from SNP 205728 to 206328 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,484 DEBUG Processing 269/639 atomic regions from SNP 80668 to 81269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:09,502 DEBUG Processing 96/710 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,530 DEBUG Processing 705/713 atomic regions from SNP 211413 to 212013 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,574 DEBUG Processing 679/727 atomic regions from SNP 203662 to 204262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,686 DEBUG Processing 798/831 atomic regions from SNP 239347 to 239947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,689 DEBUG Processing 687/687 atomic regions from SNP 206028 to 206628 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,706 DEBUG Processing 270/639 atomic regions from SNP 80969 to 81569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:09,751 DEBUG Processing 706/713 atomic regions from SNP 211713 to 212313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,762 DEBUG Processing 97/710 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:09,808 DEBUG Processing 680/727 atomic regions from SNP 203962 to 204562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,825 DEBUG Unique SNPs positions in subchromosome 3: 206629 2025-01-31 09:48:09,941 DEBUG Processing 271/639 atomic regions from SNP 81269 to 81869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:09,950 DEBUG Processing 799/831 atomic regions from SNP 239647 to 240247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,976 DEBUG Processing 707/713 atomic regions from SNP 212013 to 212613 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,028 DEBUG Processing 98/710 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,039 DEBUG Processing 681/727 atomic regions from SNP 204262 to 204862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,194 DEBUG Processing 272/639 atomic regions from SNP 81569 to 82169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:10,201 DEBUG Processing 708/713 atomic regions from SNP 212313 to 212913 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,210 DEBUG Processing 800/831 atomic regions from SNP 239947 to 240547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,269 DEBUG Processing 682/727 atomic regions from SNP 204562 to 205162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,279 DEBUG Processing 99/710 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,422 DEBUG Processing 709/713 atomic regions from SNP 212613 to 213213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,428 DEBUG Processing 273/639 atomic regions from SNP 81869 to 82469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:10,464 DEBUG Processing 801/831 atomic regions from SNP 240247 to 240847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,510 DEBUG Processing 683/727 atomic regions from SNP 204862 to 205462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,534 DEBUG Processing 100/710 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,635 DEBUG Processing 710/713 atomic regions from SNP 212913 to 213513 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,644 DEBUG Processing 274/639 atomic regions from SNP 82169 to 82769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:10,713 DEBUG Processing 802/831 atomic regions from SNP 240547 to 241147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,746 DEBUG Processing 684/727 atomic regions from SNP 205162 to 205762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,782 DEBUG Processing 101/710 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:10,852 DEBUG Processing 711/713 atomic regions from SNP 213213 to 213813 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,871 DEBUG Processing 275/639 atomic regions from SNP 82469 to 83069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:10,954 DEBUG Processing 803/831 atomic regions from SNP 240847 to 241447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,972 DEBUG Processing 685/727 atomic regions from SNP 205462 to 206062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,028 DEBUG Processing 102/710 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,078 DEBUG Processing 712/713 atomic regions from SNP 213513 to 214113 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,104 DEBUG Processing 276/639 atomic regions from SNP 82769 to 83369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:11,194 DEBUG Processing 686/727 atomic regions from SNP 205762 to 206362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,195 DEBUG Processing 804/831 atomic regions from SNP 241147 to 241747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,276 DEBUG Processing 103/710 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,299 DEBUG Processing 713/713 atomic regions from SNP 213813 to 214413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,331 DEBUG Processing 277/639 atomic regions from SNP 83069 to 83669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:11,423 DEBUG Unique SNPs positions in subchromosome 1: 214414 2025-01-31 09:48:11,431 DEBUG Processing 687/727 atomic regions from SNP 206062 to 206662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,443 DEBUG Processing 805/831 atomic regions from SNP 241447 to 242047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,509 DEBUG Processing 104/710 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,543 DEBUG Processing 278/639 atomic regions from SNP 83369 to 83969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:11,666 DEBUG Processing 688/727 atomic regions from SNP 206362 to 206962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,698 DEBUG Processing 806/831 atomic regions from SNP 241747 to 242347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,735 DEBUG Processing 105/710 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,763 DEBUG Processing 279/639 atomic regions from SNP 83669 to 84269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:11,893 DEBUG Processing 689/727 atomic regions from SNP 206662 to 207262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,950 DEBUG Processing 807/831 atomic regions from SNP 242047 to 242647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,960 DEBUG Processing 106/710 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:11,988 DEBUG Processing 280/639 atomic regions from SNP 83969 to 84569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:12,124 DEBUG Processing 690/727 atomic regions from SNP 206962 to 207562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,182 DEBUG Processing 107/710 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,203 DEBUG Processing 808/831 atomic regions from SNP 242347 to 242947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,213 DEBUG Processing 281/639 atomic regions from SNP 84269 to 84869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:12,364 DEBUG Processing 691/727 atomic regions from SNP 207262 to 207862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,404 DEBUG Processing 108/710 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,439 DEBUG Processing 282/639 atomic regions from SNP 84569 to 85169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:12,452 DEBUG Processing 809/831 atomic regions from SNP 242647 to 243247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,613 DEBUG Processing 692/727 atomic regions from SNP 207562 to 208162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,632 DEBUG Processing 109/710 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,669 DEBUG Processing 283/639 atomic regions from SNP 84869 to 85469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:12,710 DEBUG Processing 810/831 atomic regions from SNP 242947 to 243547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,857 DEBUG Processing 693/727 atomic regions from SNP 207862 to 208462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,862 DEBUG Processing 110/710 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:12,900 DEBUG Processing 284/639 atomic regions from SNP 85169 to 85769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:12,970 DEBUG Processing 811/831 atomic regions from SNP 243247 to 243847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,082 DEBUG Processing 111/710 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,094 DEBUG Processing 694/727 atomic regions from SNP 208162 to 208762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,124 DEBUG Processing 285/639 atomic regions from SNP 85469 to 86069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:13,230 DEBUG Processing 812/831 atomic regions from SNP 243547 to 244147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,297 DEBUG Processing 112/710 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,330 DEBUG Processing 695/727 atomic regions from SNP 208462 to 209062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,341 DEBUG Processing 286/639 atomic regions from SNP 85769 to 86369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:13,487 DEBUG Processing 813/831 atomic regions from SNP 243847 to 244447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,518 DEBUG Processing 113/710 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,568 DEBUG Processing 287/639 atomic regions from SNP 86069 to 86669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:13,574 DEBUG Processing 696/727 atomic regions from SNP 208762 to 209362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,739 DEBUG Processing 114/710 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:13,743 DEBUG Processing 814/831 atomic regions from SNP 244147 to 244747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,806 DEBUG Processing 288/639 atomic regions from SNP 86369 to 86969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:13,825 DEBUG Processing 697/727 atomic regions from SNP 209062 to 209662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,959 DEBUG Processing 115/710 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,000 DEBUG Processing 815/831 atomic regions from SNP 244447 to 245047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,033 DEBUG Processing 289/639 atomic regions from SNP 86669 to 87269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:14,069 DEBUG Processing 698/727 atomic regions from SNP 209362 to 209962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,184 DEBUG Processing 116/710 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,261 DEBUG Processing 816/831 atomic regions from SNP 244747 to 245347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,262 DEBUG Processing 290/639 atomic regions from SNP 86969 to 87569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:14,314 DEBUG Processing 699/727 atomic regions from SNP 209662 to 210262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,412 DEBUG Processing 117/710 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,500 DEBUG Processing 291/639 atomic regions from SNP 87269 to 87869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:14,526 DEBUG Processing 817/831 atomic regions from SNP 245047 to 245647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,558 DEBUG Processing 700/727 atomic regions from SNP 209962 to 210562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,629 DEBUG Processing 118/710 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,729 DEBUG Processing 292/639 atomic regions from SNP 87569 to 88169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:14,783 DEBUG Processing 818/831 atomic regions from SNP 245347 to 245947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,795 DEBUG Processing 701/727 atomic regions from SNP 210262 to 210862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,838 DEBUG Processing 119/710 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:14,965 DEBUG Processing 293/639 atomic regions from SNP 87869 to 88469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:15,034 DEBUG Processing 702/727 atomic regions from SNP 210562 to 211162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,041 DEBUG Processing 819/831 atomic regions from SNP 245647 to 246247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,050 DEBUG Processing 120/710 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,194 DEBUG Processing 294/639 atomic regions from SNP 88169 to 88769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:15,275 DEBUG Processing 121/710 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,282 DEBUG Processing 703/727 atomic regions from SNP 210862 to 211462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,302 DEBUG Processing 820/831 atomic regions from SNP 245947 to 246547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,413 DEBUG Processing 295/639 atomic regions from SNP 88469 to 89069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:15,500 DEBUG Processing 122/710 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,528 DEBUG Processing 704/727 atomic regions from SNP 211162 to 211762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,563 DEBUG Processing 821/831 atomic regions from SNP 246247 to 246847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,631 DEBUG Processing 296/639 atomic regions from SNP 88769 to 89369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:15,715 DEBUG Processing 123/710 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,761 DEBUG Processing 705/727 atomic regions from SNP 211462 to 212062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,828 DEBUG Processing 822/831 atomic regions from SNP 246547 to 247147 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,866 DEBUG Processing 297/639 atomic regions from SNP 89069 to 89669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:15,931 DEBUG Processing 124/710 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:15,982 DEBUG Processing 706/727 atomic regions from SNP 211762 to 212362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,081 DEBUG Processing 823/831 atomic regions from SNP 246847 to 247447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,097 DEBUG Processing 298/639 atomic regions from SNP 89369 to 89969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:16,152 DEBUG Processing 125/710 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,205 DEBUG Processing 707/727 atomic regions from SNP 212062 to 212662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,320 DEBUG Processing 299/639 atomic regions from SNP 89669 to 90269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:16,331 DEBUG Processing 824/831 atomic regions from SNP 247147 to 247747 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,364 DEBUG Processing 126/710 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,453 DEBUG Processing 708/727 atomic regions from SNP 212362 to 212962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,548 DEBUG Processing 300/639 atomic regions from SNP 89969 to 90569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:16,580 DEBUG Processing 127/710 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,588 DEBUG Processing 825/831 atomic regions from SNP 247447 to 248047 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,713 DEBUG Processing 709/727 atomic regions from SNP 212662 to 213262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,793 DEBUG Processing 301/639 atomic regions from SNP 90269 to 90869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:16,794 DEBUG Processing 128/710 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:16,809 DEBUG Subchromosome time: 189.8087864909321, subchromosome SNPs: 206629 2025-01-31 09:48:16,810 DEBUG Estimated BADs: [0.57, 4.55, 0.23, 2.28, 0.28, 7.96, 0.38, 3.41, 0.57, 6.83, 0.38, 0.00, 0.23, 3.41, 0.28, 1.14, 0.57, 2.28, 9.10, 3.41, 0.28, 1.14, 0.28, 1.14, 0.28, 1.14, 0.57, 1.14, 5.69, 1.14, 0.16, 1.14, 0.38, 1.14, 2.28, 1.14, 5.69, 1.14, 4.55, 1.14] SNP counts: [811, 2339, 834, 2445, 3689, 347, 3165, 2246, 2305, 1588, 403, 16, 1017, 12085, 2035, 8411, 7247, 1711, 1665, 2929, 1804, 2735, 8419, 2105, 10169, 9686, 7588, 11525, 716, 8353, 5115, 4200, 6587, 8144, 5387, 41775, 2922, 23904, 1889, 6506] SNP IDs counts: [811, 2339, 834, 2445, 3689, 347, 3165, 2246, 2305, 1588, 403, 16, 1017, 12085, 2035, 8411, 7247, 1711, 1665, 2929, 1804, 2735, 8419, 2105, 10169, 9686, 7588, 11525, 716, 8353, 5115, 4200, 6587, 8144, 5387, 41775, 2922, 23904, 1889, 6506] Critical gap: 675614bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.58Mbp, 5.13Mbp, 5.74Mbp, 7.30Mbp, 12.88Mbp, 13.06Mbp, 15.91Mbp, 17.10Mbp, 19.00Mbp, 19.83Mbp, 20.10Mbp[0.68Mbp], 21.21Mbp[1.58Mbp], 24.07Mbp, 30.98Mbp, 33.75Mbp, 38.31Mbp, 43.86Mbp, 44.81Mbp, 45.68Mbp, 47.24Mbp, 48.48Mbp, 49.98Mbp, 55.38Mbp, 56.65Mbp, 63.87Mbp, 69.18Mbp, 73.52Mbp, 80.00Mbp, 80.37Mbp, 84.99Mbp, 88.33Mbp, 90.76Mbp, 94.81Mbp, 99.37Mbp, 102.20Mbp, 126.26Mbp, 127.81Mbp, 140.82Mbp, 141.85Mbp, 145.44Mbp] 2025-01-31 09:48:16,810 DEBUG chr7 time: 189.8093023649417 s 2025-01-31 09:48:16,848 DEBUG Processing 826/831 atomic regions from SNP 247747 to 248347 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,947 DEBUG chr7: Fitting background model for 39 segments 2025-01-31 09:48:16,972 DEBUG Processing 710/727 atomic regions from SNP 212962 to 213562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,018 DEBUG Processing 129/710 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,029 DEBUG Processing 302/639 atomic regions from SNP 90569 to 91169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:17,108 DEBUG Processing 827/831 atomic regions from SNP 248047 to 248647 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,221 DEBUG Processing 711/727 atomic regions from SNP 213262 to 213862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,240 DEBUG Processing 130/710 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,259 DEBUG Processing 303/639 atomic regions from SNP 90869 to 91469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:17,371 DEBUG Processing 828/831 atomic regions from SNP 248347 to 248947 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,458 DEBUG Processing 131/710 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,479 DEBUG Processing 712/727 atomic regions from SNP 213562 to 214162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,493 DEBUG Processing 304/639 atomic regions from SNP 91169 to 91769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:17,573 DEBUG Subchromosome time: 190.59102116001304, subchromosome SNPs: 214414 2025-01-31 09:48:17,574 DEBUG Estimated BADs: [1.18, 0.30, 2.37, 0.59, 1.18, 0.59, 10.65, 0.59, 7.10, 1.18, 5.92, 1.18, 2.37, 0.20, 0.59, 2.37, 0.59, 2.37, 7.10, 2.37] SNP counts: [2825, 7537, 11404, 7571, 8991, 55536, 145, 14452, 3169, 20689, 2926, 16261, 4793, 8702, 4082, 13633, 8547, 4650, 9300, 9201] SNP IDs counts: [2825, 7537, 11404, 7571, 8991, 55536, 145, 14452, 3169, 20689, 2926, 16261, 4793, 8702, 4082, 13633, 8547, 4650, 9300, 9201] Critical gap: 626144bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.79Mbp, 9.69Mbp, 15.93Mbp, 22.17Mbp, 27.04Mbp, 60.94Mbp, 61.02Mbp, 69.72Mbp, 71.51Mbp, 83.56Mbp, 85.09Mbp, 94.01Mbp, 96.65Mbp, 102.23Mbp, 104.53Mbp, 111.88Mbp, 116.87Mbp, 119.34Mbp, 124.29Mbp, 129.40Mbp] 2025-01-31 09:48:17,574 DEBUG chr8 time: 190.5915421859827 s 2025-01-31 09:48:17,635 DEBUG Processing 829/831 atomic regions from SNP 248647 to 249247 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,682 DEBUG Processing 132/710 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,693 DEBUG chr8: Fitting background model for 20 segments 2025-01-31 09:48:17,719 DEBUG Processing 305/639 atomic regions from SNP 91469 to 92069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:17,733 DEBUG Processing 713/727 atomic regions from SNP 213862 to 214462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,906 DEBUG Processing 830/831 atomic regions from SNP 248947 to 249547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,912 DEBUG Processing 133/710 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:17,948 DEBUG Processing 306/639 atomic regions from SNP 91769 to 92369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:17,986 DEBUG Processing 714/727 atomic regions from SNP 214162 to 214762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,135 DEBUG Processing 134/710 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,159 DEBUG Processing 831/831 atomic regions from SNP 249247 to 249847 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,171 DEBUG Processing 307/639 atomic regions from SNP 92069 to 92669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:18,258 DEBUG Processing 715/727 atomic regions from SNP 214462 to 215062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,299 DEBUG Unique SNPs positions in subchromosome 1: 249848 2025-01-31 09:48:18,356 DEBUG Processing 135/710 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,388 DEBUG Processing 308/639 atomic regions from SNP 92369 to 92969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:18,513 DEBUG Processing 716/727 atomic regions from SNP 214762 to 215362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,576 DEBUG Processing 136/710 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,597 DEBUG Processing 309/639 atomic regions from SNP 92669 to 93269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:18,772 DEBUG Processing 717/727 atomic regions from SNP 215062 to 215662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,809 DEBUG Processing 137/710 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:18,824 DEBUG Processing 310/639 atomic regions from SNP 92969 to 93569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:19,032 DEBUG Processing 718/727 atomic regions from SNP 215362 to 215962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,045 DEBUG Processing 138/710 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,045 DEBUG Processing 311/639 atomic regions from SNP 93269 to 93869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:19,263 DEBUG Processing 312/639 atomic regions from SNP 93569 to 94169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:19,282 DEBUG Processing 139/710 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,286 DEBUG Processing 719/727 atomic regions from SNP 215662 to 216262 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,476 DEBUG Processing 313/639 atomic regions from SNP 93869 to 94469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:19,511 DEBUG Processing 140/710 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,528 DEBUG Processing 720/727 atomic regions from SNP 215962 to 216562 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,689 DEBUG Processing 314/639 atomic regions from SNP 94169 to 94769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:19,737 DEBUG Processing 141/710 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,757 DEBUG Processing 721/727 atomic regions from SNP 216262 to 216862 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,904 DEBUG Processing 315/639 atomic regions from SNP 94469 to 95069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:19,966 DEBUG Processing 142/710 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:19,984 DEBUG Processing 722/727 atomic regions from SNP 216562 to 217162 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,136 DEBUG Processing 316/639 atomic regions from SNP 94769 to 95369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:20,192 DEBUG Processing 143/710 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,213 DEBUG Processing 723/727 atomic regions from SNP 216862 to 217462 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,370 DEBUG Processing 317/639 atomic regions from SNP 95069 to 95669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:20,414 DEBUG Processing 144/710 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,442 DEBUG Processing 724/727 atomic regions from SNP 217162 to 217762 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,615 DEBUG Processing 318/639 atomic regions from SNP 95369 to 95969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:20,632 DEBUG Processing 145/710 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,669 DEBUG Processing 725/727 atomic regions from SNP 217462 to 218062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,835 DEBUG Processing 319/639 atomic regions from SNP 95669 to 96269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:20,860 DEBUG Processing 146/710 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:20,897 DEBUG Processing 726/727 atomic regions from SNP 217762 to 218362 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,057 DEBUG Processing 320/639 atomic regions from SNP 95969 to 96569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:21,096 DEBUG Processing 147/710 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,130 DEBUG Processing 727/727 atomic regions from SNP 218062 to 218662 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,169 DEBUG Subchromosome time: 244.02799886197317, subchromosome SNPs: 249848 2025-01-31 09:48:21,169 DEBUG Estimated BADs: [1.07, 0.54, 2.15, 1.07, 4.30, 1.07, 3.22, 1.07, 3.22, 1.07, 0.54, 3.22, 1.07, 0.54, 5.37, 2.15, 8.60, 2.15, 1.07] SNP counts: [7782, 33757, 12528, 5536, 999, 14776, 2667, 35922, 3375, 4757, 12325, 16338, 21769, 14249, 1374, 19034, 1060, 6625, 34975] SNP IDs counts: [7782, 33757, 12528, 5536, 999, 14776, 2667, 35922, 3375, 4757, 12325, 16338, 21769, 14249, 1374, 19034, 1060, 6625, 34975] Critical gap: 673476bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.67Mbp, 28.39Mbp, 35.13Mbp, 38.29Mbp, 38.82Mbp, 47.59Mbp, 49.23Mbp, 70.71Mbp, 72.50Mbp, 75.46Mbp, 83.03Mbp, 91.94Mbp, 104.09Mbp, 112.90Mbp, 113.62Mbp, 124.66Mbp, 125.22Mbp, 128.80Mbp, 149.74Mbp] 2025-01-31 09:48:21,169 DEBUG chr6 time: 244.02854537998792 s 2025-01-31 09:48:21,272 DEBUG Unique SNPs positions in subchromosome 1: 218663 2025-01-31 09:48:21,277 DEBUG Processing 321/639 atomic regions from SNP 96269 to 96869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:21,320 DEBUG chr6: Fitting background model for 19 segments 2025-01-31 09:48:21,329 DEBUG Processing 148/710 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,497 DEBUG Processing 322/639 atomic regions from SNP 96569 to 97169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:21,559 DEBUG Processing 149/710 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,709 DEBUG Processing 323/639 atomic regions from SNP 96869 to 97469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:21,787 DEBUG Processing 150/710 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:21,929 DEBUG Processing 324/639 atomic regions from SNP 97169 to 97769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:22,009 DEBUG Processing 151/710 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,149 DEBUG Processing 325/639 atomic regions from SNP 97469 to 98069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:22,229 DEBUG Processing 152/710 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,372 DEBUG Processing 326/639 atomic regions from SNP 97769 to 98369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:22,447 DEBUG Processing 153/710 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,596 DEBUG Processing 327/639 atomic regions from SNP 98069 to 98669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:22,674 DEBUG Processing 154/710 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:22,741 DEBUG Subchromosome time: 201.50770664401352, subchromosome SNPs: 218663 2025-01-31 09:48:22,742 DEBUG Estimated BADs: [1.00, 2.00, 1.00, 0.50, 1.00, 2.99, 1.00, 2.00, 9.98, 1.00, 0.50, 1.00, 4.99, 1.00] SNP counts: [63244, 6207, 6186, 12623, 7587, 6609, 20608, 7336, 3882, 38837, 18636, 20477, 3578, 2853] SNP IDs counts: [63244, 6207, 6186, 12623, 7587, 6609, 20608, 7336, 3882, 38837, 18636, 20477, 3578, 2853] Critical gap: 626242bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 40.13Mbp, 43.45Mbp, 46.91Mbp, 55.00Mbp, 59.86Mbp, 63.34Mbp, 75.50Mbp, 79.63Mbp, 81.65Mbp, 104.17Mbp, 115.31Mbp, 126.90Mbp, 128.78Mbp, 130.69Mbp] 2025-01-31 09:48:22,742 DEBUG chr10 time: 201.5081659470452 s 2025-01-31 09:48:22,817 DEBUG Processing 328/639 atomic regions from SNP 98369 to 98969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:22,868 DEBUG chr10: Fitting background model for 14 segments 2025-01-31 09:48:22,897 DEBUG Processing 155/710 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,040 DEBUG Processing 329/639 atomic regions from SNP 98669 to 99269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:23,122 DEBUG Processing 156/710 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,261 DEBUG Processing 330/639 atomic regions from SNP 98969 to 99569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:23,355 DEBUG Processing 157/710 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,484 DEBUG Processing 331/639 atomic regions from SNP 99269 to 99869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:23,595 DEBUG Processing 158/710 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,705 DEBUG Processing 332/639 atomic regions from SNP 99569 to 100169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:23,821 DEBUG Processing 159/710 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:23,929 DEBUG Processing 333/639 atomic regions from SNP 99869 to 100469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:24,038 DEBUG Processing 160/710 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,150 DEBUG Processing 334/639 atomic regions from SNP 100169 to 100769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:24,250 DEBUG Processing 161/710 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,376 DEBUG Processing 335/639 atomic regions from SNP 100469 to 101069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:24,469 DEBUG Processing 162/710 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,597 DEBUG Processing 336/639 atomic regions from SNP 100769 to 101369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:24,686 DEBUG Processing 163/710 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:24,822 DEBUG Processing 337/639 atomic regions from SNP 101069 to 101669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:24,915 DEBUG Processing 164/710 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,049 DEBUG Processing 338/639 atomic regions from SNP 101369 to 101969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:25,146 DEBUG Processing 165/710 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,266 DEBUG Processing 339/639 atomic regions from SNP 101669 to 102269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:25,377 DEBUG Processing 166/710 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,481 DEBUG Processing 340/639 atomic regions from SNP 101969 to 102569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:25,605 DEBUG Processing 167/710 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,714 DEBUG Processing 341/639 atomic regions from SNP 102269 to 102869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:25,833 DEBUG Processing 168/710 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:25,946 DEBUG Processing 342/639 atomic regions from SNP 102569 to 103169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:26,059 DEBUG Processing 169/710 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,161 DEBUG Processing 343/639 atomic regions from SNP 102869 to 103469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:26,280 DEBUG Processing 170/710 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,380 DEBUG Processing 344/639 atomic regions from SNP 103169 to 103769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:26,501 DEBUG Processing 171/710 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,597 DEBUG Processing 345/639 atomic regions from SNP 103469 to 104069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:26,730 DEBUG Processing 172/710 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:26,815 DEBUG Processing 346/639 atomic regions from SNP 103769 to 104369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:26,943 DEBUG Processing 173/710 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,059 DEBUG Processing 347/639 atomic regions from SNP 104069 to 104669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:27,161 DEBUG Processing 174/710 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,291 DEBUG Processing 348/639 atomic regions from SNP 104369 to 104969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:27,391 DEBUG Processing 175/710 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,514 DEBUG Processing 349/639 atomic regions from SNP 104669 to 105269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:27,618 DEBUG Processing 176/710 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,736 DEBUG Processing 350/639 atomic regions from SNP 104969 to 105569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:27,842 DEBUG Processing 177/710 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:27,956 DEBUG Processing 351/639 atomic regions from SNP 105269 to 105869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:28,070 DEBUG Processing 178/710 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,188 DEBUG Processing 352/639 atomic regions from SNP 105569 to 106169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:28,297 DEBUG Processing 179/710 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,410 DEBUG Processing 353/639 atomic regions from SNP 105869 to 106469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:28,531 DEBUG Processing 180/710 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,630 DEBUG Processing 354/639 atomic regions from SNP 106169 to 106769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:28,776 DEBUG Processing 181/710 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:28,848 DEBUG Processing 355/639 atomic regions from SNP 106469 to 107069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:29,011 DEBUG Processing 182/710 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,079 DEBUG Processing 356/639 atomic regions from SNP 106769 to 107369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:29,249 DEBUG Processing 183/710 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,301 DEBUG Processing 357/639 atomic regions from SNP 107069 to 107669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:29,490 DEBUG Processing 184/710 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,530 DEBUG Processing 358/639 atomic regions from SNP 107369 to 107969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:29,732 DEBUG Processing 185/710 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,760 DEBUG Processing 359/639 atomic regions from SNP 107669 to 108269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:29,966 DEBUG Processing 186/710 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:29,998 DEBUG Processing 360/639 atomic regions from SNP 107969 to 108569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:30,189 DEBUG Processing 187/710 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,236 DEBUG Processing 361/639 atomic regions from SNP 108269 to 108869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:30,418 DEBUG Processing 188/710 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,460 DEBUG Processing 362/639 atomic regions from SNP 108569 to 109169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:30,651 DEBUG Processing 189/710 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,680 DEBUG Processing 363/639 atomic regions from SNP 108869 to 109469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:30,884 DEBUG Processing 190/710 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:30,911 DEBUG Processing 364/639 atomic regions from SNP 109169 to 109769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:31,113 DEBUG Processing 191/710 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,132 DEBUG Processing 365/639 atomic regions from SNP 109469 to 110069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:31,340 DEBUG Processing 192/710 atomic regions from SNP 57491 to 58092 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,351 DEBUG Processing 366/639 atomic regions from SNP 109769 to 110369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:31,573 DEBUG Processing 367/639 atomic regions from SNP 110069 to 110669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:31,576 DEBUG Processing 193/710 atomic regions from SNP 57792 to 58393 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:31,793 DEBUG Processing 368/639 atomic regions from SNP 110369 to 110969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:31,810 DEBUG Processing 194/710 atomic regions from SNP 58093 to 58694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,021 DEBUG Processing 369/639 atomic regions from SNP 110669 to 111269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:32,046 DEBUG Processing 195/710 atomic regions from SNP 58394 to 58995 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,257 DEBUG Processing 370/639 atomic regions from SNP 110969 to 111569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:32,277 DEBUG Processing 196/710 atomic regions from SNP 58695 to 59296 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,488 DEBUG Processing 371/639 atomic regions from SNP 111269 to 111869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:32,512 DEBUG Processing 197/710 atomic regions from SNP 58996 to 59597 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,717 DEBUG Processing 372/639 atomic regions from SNP 111569 to 112169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:32,748 DEBUG Processing 198/710 atomic regions from SNP 59297 to 59898 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:32,954 DEBUG Processing 373/639 atomic regions from SNP 111869 to 112469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:32,985 DEBUG Processing 199/710 atomic regions from SNP 59598 to 60199 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,187 DEBUG Processing 374/639 atomic regions from SNP 112169 to 112769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:33,224 DEBUG Processing 200/710 atomic regions from SNP 59899 to 60500 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,416 DEBUG Processing 375/639 atomic regions from SNP 112469 to 113069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:33,467 DEBUG Processing 201/710 atomic regions from SNP 60200 to 60801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,634 DEBUG Processing 376/639 atomic regions from SNP 112769 to 113369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:33,709 DEBUG Processing 202/710 atomic regions from SNP 60501 to 61102 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:33,844 DEBUG Processing 377/639 atomic regions from SNP 113069 to 113669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:33,948 DEBUG Processing 203/710 atomic regions from SNP 60802 to 61403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,089 DEBUG Processing 378/639 atomic regions from SNP 113369 to 113969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:34,182 DEBUG Processing 204/710 atomic regions from SNP 61103 to 61704 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,316 DEBUG Processing 379/639 atomic regions from SNP 113669 to 114269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:34,412 DEBUG Processing 205/710 atomic regions from SNP 61404 to 62005 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,549 DEBUG Processing 380/639 atomic regions from SNP 113969 to 114569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:34,641 DEBUG Processing 206/710 atomic regions from SNP 61705 to 62306 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:34,771 DEBUG Processing 381/639 atomic regions from SNP 114269 to 114869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:34,875 DEBUG Processing 207/710 atomic regions from SNP 62006 to 62607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,006 DEBUG Processing 382/639 atomic regions from SNP 114569 to 115169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:35,106 DEBUG Processing 208/710 atomic regions from SNP 62307 to 62908 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,235 DEBUG Processing 383/639 atomic regions from SNP 114869 to 115469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:35,344 DEBUG Processing 209/710 atomic regions from SNP 62608 to 63209 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,450 DEBUG Processing 384/639 atomic regions from SNP 115169 to 115769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:35,585 DEBUG Processing 210/710 atomic regions from SNP 62909 to 63510 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,663 DEBUG Processing 385/639 atomic regions from SNP 115469 to 116069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:35,819 DEBUG Processing 211/710 atomic regions from SNP 63210 to 63811 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:35,888 DEBUG Processing 386/639 atomic regions from SNP 115769 to 116369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:36,047 DEBUG Processing 212/710 atomic regions from SNP 63511 to 64112 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,112 DEBUG Processing 387/639 atomic regions from SNP 116069 to 116669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:36,275 DEBUG Processing 213/710 atomic regions from SNP 63812 to 64413 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,340 DEBUG Processing 388/639 atomic regions from SNP 116369 to 116969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:36,504 DEBUG Processing 214/710 atomic regions from SNP 64113 to 64714 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,560 DEBUG Processing 389/639 atomic regions from SNP 116669 to 117269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:36,739 DEBUG Processing 215/710 atomic regions from SNP 64414 to 65015 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,776 DEBUG Processing 390/639 atomic regions from SNP 116969 to 117569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:36,973 DEBUG Processing 216/710 atomic regions from SNP 64715 to 65316 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:36,999 DEBUG Processing 391/639 atomic regions from SNP 117269 to 117869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:37,207 DEBUG Processing 217/710 atomic regions from SNP 65016 to 65617 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,220 DEBUG Processing 392/639 atomic regions from SNP 117569 to 118169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:37,442 DEBUG Processing 218/710 atomic regions from SNP 65317 to 65918 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,442 DEBUG Processing 393/639 atomic regions from SNP 117869 to 118469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:37,670 DEBUG Processing 394/639 atomic regions from SNP 118169 to 118769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:37,679 DEBUG Processing 219/710 atomic regions from SNP 65618 to 66219 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:37,901 DEBUG Processing 395/639 atomic regions from SNP 118469 to 119069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:37,921 DEBUG Processing 220/710 atomic regions from SNP 65919 to 66520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,127 DEBUG Processing 396/639 atomic regions from SNP 118769 to 119369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:38,166 DEBUG Processing 221/710 atomic regions from SNP 66220 to 66821 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,345 DEBUG Processing 397/639 atomic regions from SNP 119069 to 119669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:38,403 DEBUG Processing 222/710 atomic regions from SNP 66521 to 67122 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,568 DEBUG Processing 398/639 atomic regions from SNP 119369 to 119969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:38,638 DEBUG Processing 223/710 atomic regions from SNP 66822 to 67423 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:38,796 DEBUG Processing 399/639 atomic regions from SNP 119669 to 120269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:38,876 DEBUG Processing 224/710 atomic regions from SNP 67123 to 67724 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,036 DEBUG Processing 400/639 atomic regions from SNP 119969 to 120569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:39,115 DEBUG Processing 225/710 atomic regions from SNP 67424 to 68025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,279 DEBUG Processing 401/639 atomic regions from SNP 120269 to 120869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:39,363 DEBUG Processing 226/710 atomic regions from SNP 67725 to 68326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,507 DEBUG Processing 402/639 atomic regions from SNP 120569 to 121169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:39,618 DEBUG Processing 227/710 atomic regions from SNP 68026 to 68627 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,732 DEBUG Processing 403/639 atomic regions from SNP 120869 to 121469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:39,864 DEBUG Processing 228/710 atomic regions from SNP 68327 to 68928 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:39,951 DEBUG Processing 404/639 atomic regions from SNP 121169 to 121769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:40,106 DEBUG Processing 229/710 atomic regions from SNP 68628 to 69229 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,173 DEBUG Processing 405/639 atomic regions from SNP 121469 to 122069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:40,349 DEBUG Processing 230/710 atomic regions from SNP 68929 to 69530 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,408 DEBUG Processing 406/639 atomic regions from SNP 121769 to 122369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:40,592 DEBUG Processing 231/710 atomic regions from SNP 69230 to 69831 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:40,640 DEBUG Processing 407/639 atomic regions from SNP 122069 to 122669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:40,857 DEBUG Processing 408/639 atomic regions from SNP 122369 to 122969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:40,861 DEBUG Processing 232/710 atomic regions from SNP 69531 to 70132 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,074 DEBUG Processing 409/639 atomic regions from SNP 122669 to 123269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:41,129 DEBUG Processing 233/710 atomic regions from SNP 69832 to 70433 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,298 DEBUG Processing 410/639 atomic regions from SNP 122969 to 123569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:41,407 DEBUG Processing 234/710 atomic regions from SNP 70133 to 70734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,522 DEBUG Processing 411/639 atomic regions from SNP 123269 to 123869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:41,661 DEBUG Processing 235/710 atomic regions from SNP 70434 to 71035 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,755 DEBUG Processing 412/639 atomic regions from SNP 123569 to 124169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:41,907 DEBUG Processing 236/710 atomic regions from SNP 70735 to 71336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:41,983 DEBUG Processing 413/639 atomic regions from SNP 123869 to 124469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:42,144 DEBUG Processing 237/710 atomic regions from SNP 71036 to 71637 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,212 DEBUG Processing 414/639 atomic regions from SNP 124169 to 124769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:42,371 DEBUG Processing 238/710 atomic regions from SNP 71337 to 71938 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,431 DEBUG Processing 415/639 atomic regions from SNP 124469 to 125069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:42,599 DEBUG Processing 239/710 atomic regions from SNP 71638 to 72239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,639 DEBUG Processing 416/639 atomic regions from SNP 124769 to 125369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:42,830 DEBUG Processing 240/710 atomic regions from SNP 71939 to 72540 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:42,851 DEBUG Processing 417/639 atomic regions from SNP 125069 to 125669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:43,066 DEBUG Processing 241/710 atomic regions from SNP 72240 to 72841 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,075 DEBUG Processing 418/639 atomic regions from SNP 125369 to 125969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:43,301 DEBUG Processing 242/710 atomic regions from SNP 72541 to 73142 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,305 DEBUG Processing 419/639 atomic regions from SNP 125669 to 126269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:43,529 DEBUG Processing 420/639 atomic regions from SNP 125969 to 126569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:43,542 DEBUG Processing 243/710 atomic regions from SNP 72842 to 73443 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,754 DEBUG Processing 421/639 atomic regions from SNP 126269 to 126869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:43,777 DEBUG Processing 244/710 atomic regions from SNP 73143 to 73744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:43,989 DEBUG Processing 422/639 atomic regions from SNP 126569 to 127169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:44,013 DEBUG Processing 245/710 atomic regions from SNP 73444 to 74045 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,259 DEBUG Processing 423/639 atomic regions from SNP 126869 to 127469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:44,310 DEBUG Processing 246/710 atomic regions from SNP 73745 to 74346 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,474 DEBUG Processing 424/639 atomic regions from SNP 127169 to 127769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:44,551 DEBUG Processing 247/710 atomic regions from SNP 74046 to 74647 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,689 DEBUG Processing 425/639 atomic regions from SNP 127469 to 128069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:44,788 DEBUG Processing 248/710 atomic regions from SNP 74347 to 74948 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:44,902 DEBUG Processing 426/639 atomic regions from SNP 127769 to 128369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:45,021 DEBUG Processing 249/710 atomic regions from SNP 74648 to 75249 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,124 DEBUG Processing 427/639 atomic regions from SNP 128069 to 128669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:45,255 DEBUG Processing 250/710 atomic regions from SNP 74949 to 75550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,347 DEBUG Processing 428/639 atomic regions from SNP 128369 to 128969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:45,493 DEBUG Processing 251/710 atomic regions from SNP 75250 to 75850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,573 DEBUG Processing 429/639 atomic regions from SNP 128669 to 129269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:45,729 DEBUG Processing 252/710 atomic regions from SNP 75550 to 76150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:45,792 DEBUG Processing 430/639 atomic regions from SNP 128969 to 129569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:45,970 DEBUG Processing 253/710 atomic regions from SNP 75850 to 76450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,006 DEBUG Processing 431/639 atomic regions from SNP 129269 to 129869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:46,213 DEBUG Processing 254/710 atomic regions from SNP 76150 to 76750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,226 DEBUG Processing 432/639 atomic regions from SNP 129569 to 130169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:46,455 DEBUG Processing 433/639 atomic regions from SNP 129869 to 130469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:46,455 DEBUG Processing 255/710 atomic regions from SNP 76450 to 77050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,680 DEBUG Processing 434/639 atomic regions from SNP 130169 to 130769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:46,693 DEBUG Processing 256/710 atomic regions from SNP 76750 to 77350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:46,903 DEBUG Processing 435/639 atomic regions from SNP 130469 to 131069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:46,931 DEBUG Processing 257/710 atomic regions from SNP 77050 to 77650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,130 DEBUG Processing 436/639 atomic regions from SNP 130769 to 131369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:47,175 DEBUG Processing 258/710 atomic regions from SNP 77350 to 77950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,347 DEBUG Processing 437/639 atomic regions from SNP 131069 to 131669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:47,416 DEBUG Processing 259/710 atomic regions from SNP 77650 to 78250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,553 DEBUG Processing 438/639 atomic regions from SNP 131369 to 131969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:47,655 DEBUG Processing 260/710 atomic regions from SNP 77950 to 78550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,702 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:48:47,764 DEBUG Processing 439/639 atomic regions from SNP 131669 to 132269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:47,895 DEBUG Processing 261/710 atomic regions from SNP 78250 to 78850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:47,979 DEBUG Processing 440/639 atomic regions from SNP 131969 to 132569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:48,138 DEBUG Processing 262/710 atomic regions from SNP 78550 to 79150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,200 DEBUG Processing 441/639 atomic regions from SNP 132269 to 132869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:48,377 DEBUG Processing 263/710 atomic regions from SNP 78850 to 79450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,413 DEBUG Processing 442/639 atomic regions from SNP 132569 to 133169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:48,609 DEBUG Processing 264/710 atomic regions from SNP 79150 to 79750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:48,627 DEBUG Processing 443/639 atomic regions from SNP 132869 to 133469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:48,844 DEBUG Processing 444/639 atomic regions from SNP 133169 to 133769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:48,849 DEBUG Processing 265/710 atomic regions from SNP 79450 to 80050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,064 DEBUG Processing 445/639 atomic regions from SNP 133469 to 134069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:49,093 DEBUG Processing 266/710 atomic regions from SNP 79750 to 80350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,281 DEBUG Processing 446/639 atomic regions from SNP 133769 to 134369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:49,332 DEBUG Processing 267/710 atomic regions from SNP 80050 to 80650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,491 DEBUG Processing 447/639 atomic regions from SNP 134069 to 134669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:49,567 DEBUG Processing 268/710 atomic regions from SNP 80350 to 80950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,698 DEBUG Processing 448/639 atomic regions from SNP 134369 to 134969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:49,796 DEBUG Processing 269/710 atomic regions from SNP 80650 to 81250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:49,901 DEBUG Processing 449/639 atomic regions from SNP 134669 to 135269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:50,031 DEBUG Processing 270/710 atomic regions from SNP 80950 to 81550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,106 DEBUG Processing 450/639 atomic regions from SNP 134969 to 135569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:50,266 DEBUG Processing 271/710 atomic regions from SNP 81250 to 81850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,314 DEBUG Processing 451/639 atomic regions from SNP 135269 to 135869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:50,504 DEBUG Processing 272/710 atomic regions from SNP 81550 to 82150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,529 DEBUG Processing 452/639 atomic regions from SNP 135569 to 136169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:50,742 DEBUG Processing 453/639 atomic regions from SNP 135869 to 136469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:50,743 DEBUG Processing 273/710 atomic regions from SNP 81850 to 82450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:50,961 DEBUG Processing 454/639 atomic regions from SNP 136169 to 136769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:50,990 DEBUG Processing 274/710 atomic regions from SNP 82150 to 82750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,178 DEBUG Processing 455/639 atomic regions from SNP 136469 to 137069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:51,227 DEBUG Processing 275/710 atomic regions from SNP 82450 to 83050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,392 DEBUG Processing 456/639 atomic regions from SNP 136769 to 137369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:51,462 DEBUG Processing 276/710 atomic regions from SNP 82750 to 83350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,602 DEBUG Processing 457/639 atomic regions from SNP 137069 to 137669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:51,701 DEBUG Processing 277/710 atomic regions from SNP 83050 to 83650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:51,814 DEBUG Processing 458/639 atomic regions from SNP 137369 to 137969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:51,940 DEBUG Processing 278/710 atomic regions from SNP 83350 to 83950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,036 DEBUG Processing 459/639 atomic regions from SNP 137669 to 138269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:52,179 DEBUG Processing 279/710 atomic regions from SNP 83650 to 84250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,257 DEBUG Processing 460/639 atomic regions from SNP 137969 to 138569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:52,421 DEBUG Processing 280/710 atomic regions from SNP 83950 to 84550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,475 DEBUG Processing 461/639 atomic regions from SNP 138269 to 138869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:52,664 DEBUG Processing 281/710 atomic regions from SNP 84250 to 84850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:52,692 DEBUG Processing 462/639 atomic regions from SNP 138569 to 139169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:52,915 DEBUG Processing 463/639 atomic regions from SNP 138869 to 139469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:52,916 DEBUG Processing 282/710 atomic regions from SNP 84550 to 85150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,137 DEBUG Processing 464/639 atomic regions from SNP 139169 to 139769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:53,161 DEBUG Processing 283/710 atomic regions from SNP 84850 to 85450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,357 DEBUG Processing 465/639 atomic regions from SNP 139469 to 140069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:53,360 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:48:53,404 DEBUG Processing 284/710 atomic regions from SNP 85150 to 85750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,579 DEBUG Processing 466/639 atomic regions from SNP 139769 to 140369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:53,643 DEBUG Processing 285/710 atomic regions from SNP 85450 to 86050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:53,802 DEBUG Processing 467/639 atomic regions from SNP 140069 to 140669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:53,880 DEBUG Processing 286/710 atomic regions from SNP 85750 to 86350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,033 DEBUG Processing 468/639 atomic regions from SNP 140369 to 140969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:54,128 DEBUG Processing 287/710 atomic regions from SNP 86050 to 86650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,260 DEBUG Processing 469/639 atomic regions from SNP 140669 to 141269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:54,379 DEBUG Processing 288/710 atomic regions from SNP 86350 to 86950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,480 DEBUG Processing 470/639 atomic regions from SNP 140969 to 141569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:54,622 DEBUG Processing 289/710 atomic regions from SNP 86650 to 87250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,705 DEBUG Processing 471/639 atomic regions from SNP 141269 to 141869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:54,863 DEBUG Processing 290/710 atomic regions from SNP 86950 to 87550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:54,926 DEBUG Processing 472/639 atomic regions from SNP 141569 to 142169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:55,104 DEBUG Processing 291/710 atomic regions from SNP 87250 to 87850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,143 DEBUG Processing 473/639 atomic regions from SNP 141869 to 142469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:55,343 DEBUG Processing 292/710 atomic regions from SNP 87550 to 88150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,361 DEBUG Processing 474/639 atomic regions from SNP 142169 to 142769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:55,577 DEBUG Processing 475/639 atomic regions from SNP 142469 to 143069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:55,578 DEBUG Processing 293/710 atomic regions from SNP 87850 to 88450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:55,801 DEBUG Processing 476/639 atomic regions from SNP 142769 to 143369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:55,816 DEBUG Processing 294/710 atomic regions from SNP 88150 to 88750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,021 DEBUG Processing 477/639 atomic regions from SNP 143069 to 143669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:56,057 DEBUG Processing 295/710 atomic regions from SNP 88450 to 89050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,232 DEBUG Processing 478/639 atomic regions from SNP 143369 to 143969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:56,307 DEBUG Processing 296/710 atomic regions from SNP 88750 to 89350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,446 DEBUG Processing 479/639 atomic regions from SNP 143669 to 144269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:56,545 DEBUG Processing 297/710 atomic regions from SNP 89050 to 89650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,663 DEBUG Processing 480/639 atomic regions from SNP 143969 to 144569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:56,779 DEBUG Processing 298/710 atomic regions from SNP 89350 to 89950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:56,880 DEBUG Processing 481/639 atomic regions from SNP 144269 to 144869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:57,020 DEBUG Processing 299/710 atomic regions from SNP 89650 to 90250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,095 DEBUG Processing 482/639 atomic regions from SNP 144569 to 145169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:57,254 DEBUG Processing 300/710 atomic regions from SNP 89950 to 90550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,305 DEBUG Processing 483/639 atomic regions from SNP 144869 to 145469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:57,486 DEBUG Processing 301/710 atomic regions from SNP 90250 to 90850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,515 DEBUG Processing 484/639 atomic regions from SNP 145169 to 145769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:57,718 DEBUG Processing 302/710 atomic regions from SNP 90550 to 91150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:57,726 DEBUG Processing 485/639 atomic regions from SNP 145469 to 146069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:57,943 DEBUG Processing 486/639 atomic regions from SNP 145769 to 146369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:57,955 DEBUG Processing 303/710 atomic regions from SNP 90850 to 91450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,163 DEBUG Processing 487/639 atomic regions from SNP 146069 to 146669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:58,194 DEBUG Processing 304/710 atomic regions from SNP 91150 to 91750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,386 DEBUG Processing 488/639 atomic regions from SNP 146369 to 146969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:58,432 DEBUG Processing 305/710 atomic regions from SNP 91450 to 92050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,610 DEBUG Processing 489/639 atomic regions from SNP 146669 to 147269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:58,668 DEBUG Processing 306/710 atomic regions from SNP 91750 to 92350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:58,829 DEBUG Processing 490/639 atomic regions from SNP 146969 to 147569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:58,905 DEBUG Processing 307/710 atomic regions from SNP 92050 to 92650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,042 DEBUG Processing 491/639 atomic regions from SNP 147269 to 147869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:59,067 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:48:59,141 DEBUG Processing 308/710 atomic regions from SNP 92350 to 92950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,251 DEBUG Processing 492/639 atomic regions from SNP 147569 to 148169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:59,372 DEBUG Processing 309/710 atomic regions from SNP 92650 to 93250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,466 DEBUG Processing 493/639 atomic regions from SNP 147869 to 148469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:59,612 DEBUG Processing 310/710 atomic regions from SNP 92950 to 93550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,680 DEBUG Processing 494/639 atomic regions from SNP 148169 to 148769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:48:59,865 DEBUG Processing 311/710 atomic regions from SNP 93250 to 93850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:48:59,888 DEBUG Processing 495/639 atomic regions from SNP 148469 to 149069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:00,096 DEBUG Processing 496/639 atomic regions from SNP 148769 to 149369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:00,109 DEBUG Processing 312/710 atomic regions from SNP 93550 to 94150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,307 DEBUG Processing 497/639 atomic regions from SNP 149069 to 149669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:00,337 DEBUG Processing 313/710 atomic regions from SNP 93850 to 94450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,523 DEBUG Processing 498/639 atomic regions from SNP 149369 to 149969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:00,576 DEBUG Processing 314/710 atomic regions from SNP 94150 to 94750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,731 DEBUG Processing 499/639 atomic regions from SNP 149669 to 150269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:00,831 DEBUG Processing 315/710 atomic regions from SNP 94450 to 95050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:00,938 DEBUG Processing 500/639 atomic regions from SNP 149969 to 150569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:01,079 DEBUG Processing 316/710 atomic regions from SNP 94750 to 95350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,144 DEBUG Processing 501/639 atomic regions from SNP 150269 to 150869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:01,308 DEBUG Processing 317/710 atomic regions from SNP 95050 to 95650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,355 DEBUG Processing 502/639 atomic regions from SNP 150569 to 151169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:01,542 DEBUG Processing 318/710 atomic regions from SNP 95350 to 95950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,565 DEBUG Processing 503/639 atomic regions from SNP 150869 to 151469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:01,780 DEBUG Processing 504/639 atomic regions from SNP 151169 to 151769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:01,797 DEBUG Processing 319/710 atomic regions from SNP 95650 to 96250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:01,995 DEBUG Processing 505/639 atomic regions from SNP 151469 to 152069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:02,041 DEBUG Processing 320/710 atomic regions from SNP 95950 to 96550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,207 DEBUG Processing 506/639 atomic regions from SNP 151769 to 152369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:02,289 DEBUG Processing 321/710 atomic regions from SNP 96250 to 96850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,427 DEBUG Processing 507/639 atomic regions from SNP 152069 to 152669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:02,526 DEBUG Processing 322/710 atomic regions from SNP 96550 to 97150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,637 DEBUG Processing 508/639 atomic regions from SNP 152369 to 152969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:02,714 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:49:02,715 DEBUG chr11: Signal quantile: 0.986. signal threshold: 9. Best RMSEA: 0.014 2025-01-31 09:49:02,753 DEBUG Processing 323/710 atomic regions from SNP 96850 to 97450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:02,842 DEBUG Processing 509/639 atomic regions from SNP 152669 to 153269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:02,989 DEBUG Processing 324/710 atomic regions from SNP 97150 to 97750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,046 DEBUG Processing 510/639 atomic regions from SNP 152969 to 153569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:03,232 DEBUG Processing 325/710 atomic regions from SNP 97450 to 98050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,255 DEBUG Processing 511/639 atomic regions from SNP 153269 to 153869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:03,464 DEBUG Processing 512/639 atomic regions from SNP 153569 to 154169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:03,470 DEBUG Processing 326/710 atomic regions from SNP 97750 to 98350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,673 DEBUG Processing 513/639 atomic regions from SNP 153869 to 154469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:03,718 DEBUG Processing 327/710 atomic regions from SNP 98050 to 98650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:03,888 DEBUG Processing 514/639 atomic regions from SNP 154169 to 154769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:03,978 DEBUG Processing 328/710 atomic regions from SNP 98350 to 98950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,104 DEBUG Processing 515/639 atomic regions from SNP 154469 to 155069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:04,204 DEBUG Processing 329/710 atomic regions from SNP 98650 to 99250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,319 DEBUG Processing 516/639 atomic regions from SNP 154769 to 155369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:04,432 DEBUG Processing 330/710 atomic regions from SNP 98950 to 99550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,524 DEBUG Processing 517/639 atomic regions from SNP 155069 to 155669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:04,665 DEBUG Processing 331/710 atomic regions from SNP 99250 to 99850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,729 DEBUG Processing 518/639 atomic regions from SNP 155369 to 155969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:04,897 DEBUG Processing 332/710 atomic regions from SNP 99550 to 100150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:04,940 DEBUG Processing 519/639 atomic regions from SNP 155669 to 156269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:04,972 DEBUG chr11 total SNP count: 211848 2025-01-31 09:49:04,972 DEBUG chr11 length: 122082543 2025-01-31 09:49:04,972 DEBUG ----------------------------------------- 2025-01-31 09:49:04,972 INFO Processing SNPs in chr11 2025-01-31 09:49:05,132 DEBUG Processing 333/710 atomic regions from SNP 99850 to 100450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,152 DEBUG Processing 520/639 atomic regions from SNP 155969 to 156569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:05,182 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211848)] 2025-01-31 09:49:05,323 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:05,365 DEBUG Processing 334/710 atomic regions from SNP 100150 to 100750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,371 DEBUG Processing 521/639 atomic regions from SNP 156269 to 156869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:05,587 DEBUG Processing 522/639 atomic regions from SNP 156569 to 157169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:05,604 DEBUG Processing 335/710 atomic regions from SNP 100450 to 101050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:05,828 DEBUG Processing 523/639 atomic regions from SNP 156869 to 157469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:05,845 DEBUG Processing 336/710 atomic regions from SNP 100750 to 101350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,042 DEBUG Processing 524/639 atomic regions from SNP 157169 to 157769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:06,083 DEBUG Processing 337/710 atomic regions from SNP 101050 to 101650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,249 DEBUG Processing 525/639 atomic regions from SNP 157469 to 158069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:06,320 DEBUG Processing 338/710 atomic regions from SNP 101350 to 101950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,350 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:49:06,352 DEBUG chr13: Signal quantile: 0.992. signal threshold: 10. Best RMSEA: 0.014 2025-01-31 09:49:06,454 DEBUG Processing 526/639 atomic regions from SNP 157769 to 158369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:06,552 DEBUG Processing 339/710 atomic regions from SNP 101650 to 102250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,666 DEBUG Processing 527/639 atomic regions from SNP 158069 to 158669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:06,787 DEBUG Processing 340/710 atomic regions from SNP 101950 to 102550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:06,879 DEBUG Processing 528/639 atomic regions from SNP 158369 to 158969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:07,020 DEBUG Processing 341/710 atomic regions from SNP 102250 to 102850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,087 DEBUG Processing 529/639 atomic regions from SNP 158669 to 159269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:07,250 DEBUG Processing 342/710 atomic regions from SNP 102550 to 103150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,299 DEBUG Processing 530/639 atomic regions from SNP 158969 to 159569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:07,486 DEBUG Processing 343/710 atomic regions from SNP 102850 to 103450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,513 DEBUG Processing 531/639 atomic regions from SNP 159269 to 159869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:07,722 DEBUG Processing 532/639 atomic regions from SNP 159569 to 160169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:07,725 DEBUG Processing 344/710 atomic regions from SNP 103150 to 103750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:07,932 DEBUG Processing 533/639 atomic regions from SNP 159869 to 160469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:07,980 DEBUG Processing 345/710 atomic regions from SNP 103450 to 104050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,138 DEBUG Processing 534/639 atomic regions from SNP 160169 to 160769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:08,214 DEBUG Processing 346/710 atomic regions from SNP 103750 to 104350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,344 DEBUG Processing 535/639 atomic regions from SNP 160469 to 161069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:08,474 DEBUG Processing 347/710 atomic regions from SNP 104050 to 104650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,553 DEBUG Processing 536/639 atomic regions from SNP 160769 to 161369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:08,596 DEBUG chr13 total SNP count: 200480 2025-01-31 09:49:08,596 DEBUG chr13 length: 120421639 2025-01-31 09:49:08,597 DEBUG ----------------------------------------- 2025-01-31 09:49:08,597 INFO Processing SNPs in chr13 2025-01-31 09:49:08,735 DEBUG Processing 348/710 atomic regions from SNP 104350 to 104950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,761 DEBUG Processing 537/639 atomic regions from SNP 161069 to 161669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:08,796 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 200480)] 2025-01-31 09:49:08,933 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:08,966 DEBUG Processing 349/710 atomic regions from SNP 104650 to 105250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:08,968 DEBUG Processing 538/639 atomic regions from SNP 161369 to 161969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:09,173 DEBUG Processing 539/639 atomic regions from SNP 161669 to 162269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:09,199 DEBUG Processing 350/710 atomic regions from SNP 104950 to 105550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,381 DEBUG Processing 540/639 atomic regions from SNP 161969 to 162569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:09,434 DEBUG Processing 351/710 atomic regions from SNP 105250 to 105850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,592 DEBUG Processing 541/639 atomic regions from SNP 162269 to 162869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:09,671 DEBUG Processing 352/710 atomic regions from SNP 105550 to 106150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:09,802 DEBUG Processing 542/639 atomic regions from SNP 162569 to 163169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:09,912 DEBUG Processing 353/710 atomic regions from SNP 105850 to 106450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,016 DEBUG Processing 543/639 atomic regions from SNP 162869 to 163469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:10,160 DEBUG Processing 354/710 atomic regions from SNP 106150 to 106750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,232 DEBUG Processing 544/639 atomic regions from SNP 163169 to 163769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:10,430 DEBUG Processing 355/710 atomic regions from SNP 106450 to 107050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,449 DEBUG Processing 545/639 atomic regions from SNP 163469 to 164069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:10,655 DEBUG Processing 546/639 atomic regions from SNP 163769 to 164369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:10,691 DEBUG Processing 356/710 atomic regions from SNP 106750 to 107350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:10,862 DEBUG Processing 547/639 atomic regions from SNP 164069 to 164669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:10,947 DEBUG Processing 357/710 atomic regions from SNP 107050 to 107650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,072 DEBUG Processing 548/639 atomic regions from SNP 164369 to 164969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:11,194 DEBUG Processing 358/710 atomic regions from SNP 107350 to 107950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,279 DEBUG Processing 549/639 atomic regions from SNP 164669 to 165269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:11,314 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:49:11,316 DEBUG chr12: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.022 2025-01-31 09:49:11,440 DEBUG Processing 359/710 atomic regions from SNP 107650 to 108250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,491 DEBUG Processing 550/639 atomic regions from SNP 164969 to 165569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:11,687 DEBUG Processing 360/710 atomic regions from SNP 107950 to 108550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:11,706 DEBUG Processing 551/639 atomic regions from SNP 165269 to 165869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:11,924 DEBUG Processing 552/639 atomic regions from SNP 165569 to 166169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:11,933 DEBUG Processing 361/710 atomic regions from SNP 108250 to 108850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,135 DEBUG Processing 553/639 atomic regions from SNP 165869 to 166469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:12,181 DEBUG Processing 362/710 atomic regions from SNP 108550 to 109150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,349 DEBUG Processing 554/639 atomic regions from SNP 166169 to 166769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:12,448 DEBUG Processing 363/710 atomic regions from SNP 108850 to 109450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,568 DEBUG Processing 555/639 atomic regions from SNP 166469 to 167069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:12,698 DEBUG Processing 364/710 atomic regions from SNP 109150 to 109750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:12,787 DEBUG Processing 556/639 atomic regions from SNP 166769 to 167369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:12,972 DEBUG Processing 365/710 atomic regions from SNP 109450 to 110050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,005 DEBUG Processing 557/639 atomic regions from SNP 167069 to 167669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:13,220 DEBUG Processing 558/639 atomic regions from SNP 167369 to 167969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:13,230 DEBUG Processing 366/710 atomic regions from SNP 109750 to 110350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,436 DEBUG Processing 559/639 atomic regions from SNP 167669 to 168269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:13,471 DEBUG Processing 367/710 atomic regions from SNP 110050 to 110650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,600 DEBUG chr12 total SNP count: 193673 2025-01-31 09:49:13,601 DEBUG chr12 length: 120129022 2025-01-31 09:49:13,601 DEBUG ----------------------------------------- 2025-01-31 09:49:13,601 INFO Processing SNPs in chr12 2025-01-31 09:49:13,652 DEBUG Processing 560/639 atomic regions from SNP 167969 to 168569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:13,721 DEBUG Processing 368/710 atomic regions from SNP 110350 to 110950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:13,812 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 193673)] 2025-01-31 09:49:13,864 DEBUG Processing 561/639 atomic regions from SNP 168269 to 168869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:13,948 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:13,971 DEBUG Processing 369/710 atomic regions from SNP 110650 to 111250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,073 DEBUG Processing 562/639 atomic regions from SNP 168569 to 169169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:14,207 DEBUG Processing 370/710 atomic regions from SNP 110950 to 111550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,288 DEBUG Processing 563/639 atomic regions from SNP 168869 to 169469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:14,435 DEBUG Processing 371/710 atomic regions from SNP 111250 to 111850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,499 DEBUG Processing 564/639 atomic regions from SNP 169169 to 169769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:14,667 DEBUG Processing 372/710 atomic regions from SNP 111550 to 112150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,709 DEBUG Processing 565/639 atomic regions from SNP 169469 to 170069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:14,902 DEBUG Processing 373/710 atomic regions from SNP 111850 to 112450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:14,926 DEBUG Processing 566/639 atomic regions from SNP 169769 to 170369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:15,141 DEBUG Processing 374/710 atomic regions from SNP 112150 to 112750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,143 DEBUG Processing 567/639 atomic regions from SNP 170069 to 170669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:15,360 DEBUG Processing 568/639 atomic regions from SNP 170369 to 170969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:15,384 DEBUG Processing 375/710 atomic regions from SNP 112450 to 113050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,581 DEBUG Processing 569/639 atomic regions from SNP 170669 to 171269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:15,627 DEBUG Processing 376/710 atomic regions from SNP 112750 to 113350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:15,795 DEBUG Processing 570/639 atomic regions from SNP 170969 to 171569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:15,865 DEBUG Processing 377/710 atomic regions from SNP 113050 to 113650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,011 DEBUG Processing 571/639 atomic regions from SNP 171269 to 171869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:16,101 DEBUG Processing 378/710 atomic regions from SNP 113350 to 113950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,225 DEBUG Processing 572/639 atomic regions from SNP 171569 to 172169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:16,337 DEBUG Processing 379/710 atomic regions from SNP 113650 to 114250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,442 DEBUG Processing 573/639 atomic regions from SNP 171869 to 172469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:16,576 DEBUG Processing 380/710 atomic regions from SNP 113950 to 114550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,657 DEBUG Processing 574/639 atomic regions from SNP 172169 to 172769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:16,819 DEBUG Processing 381/710 atomic regions from SNP 114250 to 114850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:16,870 DEBUG Processing 575/639 atomic regions from SNP 172469 to 173069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:17,054 DEBUG Processing 382/710 atomic regions from SNP 114550 to 115150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,087 DEBUG Processing 576/639 atomic regions from SNP 172769 to 173369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:17,292 DEBUG Processing 383/710 atomic regions from SNP 114850 to 115450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,309 DEBUG Processing 577/639 atomic regions from SNP 173069 to 173669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:17,529 DEBUG Processing 578/639 atomic regions from SNP 173369 to 173969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:17,534 DEBUG Processing 384/710 atomic regions from SNP 115150 to 115750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,743 DEBUG Processing 579/639 atomic regions from SNP 173669 to 174269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:17,770 DEBUG Processing 385/710 atomic regions from SNP 115450 to 116050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:17,958 DEBUG Processing 580/639 atomic regions from SNP 173969 to 174569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:18,004 DEBUG Processing 386/710 atomic regions from SNP 115750 to 116350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,166 DEBUG Processing 581/639 atomic regions from SNP 174269 to 174869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:18,237 DEBUG Processing 387/710 atomic regions from SNP 116050 to 116650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,384 DEBUG Processing 582/639 atomic regions from SNP 174569 to 175169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:18,467 DEBUG Processing 388/710 atomic regions from SNP 116350 to 116950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,608 DEBUG Processing 583/639 atomic regions from SNP 174869 to 175469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:18,698 DEBUG Processing 389/710 atomic regions from SNP 116650 to 117250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:18,829 DEBUG Processing 584/639 atomic regions from SNP 175169 to 175769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:18,935 DEBUG Processing 390/710 atomic regions from SNP 116950 to 117550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,044 DEBUG Processing 585/639 atomic regions from SNP 175469 to 176069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:19,171 DEBUG Processing 391/710 atomic regions from SNP 117250 to 117850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,262 DEBUG Processing 586/639 atomic regions from SNP 175769 to 176369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:19,401 DEBUG Processing 392/710 atomic regions from SNP 117550 to 118150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,484 DEBUG Processing 587/639 atomic regions from SNP 176069 to 176669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:19,635 DEBUG Processing 393/710 atomic regions from SNP 117850 to 118450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,702 DEBUG Processing 588/639 atomic regions from SNP 176369 to 176969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:19,868 DEBUG Processing 394/710 atomic regions from SNP 118150 to 118750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:19,917 DEBUG Processing 589/639 atomic regions from SNP 176669 to 177269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:20,095 DEBUG Processing 395/710 atomic regions from SNP 118450 to 119050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,135 DEBUG Processing 590/639 atomic regions from SNP 176969 to 177569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:20,320 DEBUG Processing 396/710 atomic regions from SNP 118750 to 119350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,359 DEBUG Processing 591/639 atomic regions from SNP 177269 to 177869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:20,539 DEBUG Processing 397/710 atomic regions from SNP 119050 to 119650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,577 DEBUG Processing 592/639 atomic regions from SNP 177569 to 178169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:20,765 DEBUG Processing 398/710 atomic regions from SNP 119350 to 119950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:20,788 DEBUG Processing 593/639 atomic regions from SNP 177869 to 178469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:20,992 DEBUG Processing 399/710 atomic regions from SNP 119650 to 120250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,003 DEBUG Processing 594/639 atomic regions from SNP 178169 to 178769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:21,218 DEBUG Processing 595/639 atomic regions from SNP 178469 to 179069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:21,225 DEBUG Processing 400/710 atomic regions from SNP 119950 to 120550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,440 DEBUG Processing 596/639 atomic regions from SNP 178769 to 179369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:21,457 DEBUG Processing 401/710 atomic regions from SNP 120250 to 120850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,658 DEBUG Processing 597/639 atomic regions from SNP 179069 to 179669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:21,681 DEBUG Processing 402/710 atomic regions from SNP 120550 to 121150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:21,867 DEBUG Processing 598/639 atomic regions from SNP 179369 to 179969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:21,897 DEBUG Processing 403/710 atomic regions from SNP 120850 to 121450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,082 DEBUG Processing 599/639 atomic regions from SNP 179669 to 180269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:22,114 DEBUG Processing 404/710 atomic regions from SNP 121150 to 121750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,303 DEBUG Processing 600/639 atomic regions from SNP 179969 to 180569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:22,342 DEBUG Processing 405/710 atomic regions from SNP 121450 to 122050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,525 DEBUG Processing 601/639 atomic regions from SNP 180269 to 180869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:22,576 DEBUG Processing 406/710 atomic regions from SNP 121750 to 122350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,735 DEBUG Processing 602/639 atomic regions from SNP 180569 to 181169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:22,807 DEBUG Processing 407/710 atomic regions from SNP 122050 to 122650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:22,895 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:49:22,945 DEBUG Processing 603/639 atomic regions from SNP 180869 to 181469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:23,037 DEBUG Processing 408/710 atomic regions from SNP 122350 to 122950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,168 DEBUG Processing 604/639 atomic regions from SNP 181169 to 181769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:23,302 DEBUG Processing 409/710 atomic regions from SNP 122650 to 123250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,389 DEBUG Processing 605/639 atomic regions from SNP 181469 to 182069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:23,545 DEBUG Processing 410/710 atomic regions from SNP 122950 to 123550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,610 DEBUG Processing 606/639 atomic regions from SNP 181769 to 182369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:23,782 DEBUG Processing 411/710 atomic regions from SNP 123250 to 123850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:23,836 DEBUG Processing 607/639 atomic regions from SNP 182069 to 182669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:24,024 DEBUG Processing 412/710 atomic regions from SNP 123550 to 124150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,062 DEBUG Processing 608/639 atomic regions from SNP 182369 to 182969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:24,265 DEBUG Processing 413/710 atomic regions from SNP 123850 to 124450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,292 DEBUG Processing 609/639 atomic regions from SNP 182669 to 183269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:24,496 DEBUG Processing 414/710 atomic regions from SNP 124150 to 124750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,515 DEBUG Processing 610/639 atomic regions from SNP 182969 to 183569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:24,726 DEBUG Processing 415/710 atomic regions from SNP 124450 to 125050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:24,732 DEBUG Processing 611/639 atomic regions from SNP 183269 to 183869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:24,953 DEBUG Processing 612/639 atomic regions from SNP 183569 to 184169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:24,963 DEBUG Processing 416/710 atomic regions from SNP 124750 to 125350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,178 DEBUG Processing 613/639 atomic regions from SNP 183869 to 184469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:25,202 DEBUG Processing 417/710 atomic regions from SNP 125050 to 125650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,403 DEBUG Processing 614/639 atomic regions from SNP 184169 to 184769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:25,446 DEBUG Processing 418/710 atomic regions from SNP 125350 to 125950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,629 DEBUG Processing 615/639 atomic regions from SNP 184469 to 185069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:25,691 DEBUG Processing 419/710 atomic regions from SNP 125650 to 126250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:25,857 DEBUG Processing 616/639 atomic regions from SNP 184769 to 185369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:25,934 DEBUG Processing 420/710 atomic regions from SNP 125950 to 126550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,080 DEBUG Processing 617/639 atomic regions from SNP 185069 to 185669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:26,175 DEBUG Processing 421/710 atomic regions from SNP 126250 to 126850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,293 DEBUG Processing 618/639 atomic regions from SNP 185369 to 185969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:26,402 DEBUG Processing 422/710 atomic regions from SNP 126550 to 127150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,502 DEBUG Processing 619/639 atomic regions from SNP 185669 to 186269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:26,629 DEBUG Processing 423/710 atomic regions from SNP 126850 to 127450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,717 DEBUG Processing 620/639 atomic regions from SNP 185969 to 186569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:26,863 DEBUG Processing 424/710 atomic regions from SNP 127150 to 127750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:26,941 DEBUG Processing 621/639 atomic regions from SNP 186269 to 186869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:27,101 DEBUG Processing 425/710 atomic regions from SNP 127450 to 128050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,170 DEBUG Processing 622/639 atomic regions from SNP 186569 to 187169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:27,344 DEBUG Processing 426/710 atomic regions from SNP 127750 to 128350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,393 DEBUG Processing 623/639 atomic regions from SNP 186869 to 187469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:27,590 DEBUG Processing 427/710 atomic regions from SNP 128050 to 128650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,629 DEBUG Processing 624/639 atomic regions from SNP 187169 to 187769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:27,827 DEBUG Processing 428/710 atomic regions from SNP 128350 to 128950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:27,875 DEBUG Processing 625/639 atomic regions from SNP 187469 to 188069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,053 DEBUG Processing 429/710 atomic regions from SNP 128650 to 129250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,104 DEBUG Processing 626/639 atomic regions from SNP 187769 to 188369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,278 DEBUG Processing 430/710 atomic regions from SNP 128950 to 129550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,329 DEBUG Processing 627/639 atomic regions from SNP 188069 to 188669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,508 DEBUG Processing 431/710 atomic regions from SNP 129250 to 129850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,556 DEBUG Processing 628/639 atomic regions from SNP 188369 to 188969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,733 DEBUG Processing 432/710 atomic regions from SNP 129550 to 130150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,777 DEBUG Processing 629/639 atomic regions from SNP 188669 to 189269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,952 DEBUG Processing 433/710 atomic regions from SNP 129850 to 130450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:28,999 DEBUG Processing 630/639 atomic regions from SNP 188969 to 189569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,190 DEBUG Processing 434/710 atomic regions from SNP 130150 to 130750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,218 DEBUG Processing 631/639 atomic regions from SNP 189269 to 189869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,430 DEBUG Processing 435/710 atomic regions from SNP 130450 to 131050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,445 DEBUG Processing 632/639 atomic regions from SNP 189569 to 190169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,666 DEBUG Processing 436/710 atomic regions from SNP 130750 to 131350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:29,671 DEBUG Processing 633/639 atomic regions from SNP 189869 to 190469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,899 DEBUG Processing 634/639 atomic regions from SNP 190169 to 190769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,903 DEBUG Processing 437/710 atomic regions from SNP 131050 to 131650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,134 DEBUG Processing 635/639 atomic regions from SNP 190469 to 191069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,153 DEBUG Processing 438/710 atomic regions from SNP 131350 to 131950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,376 DEBUG Processing 636/639 atomic regions from SNP 190769 to 191369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,403 DEBUG Processing 439/710 atomic regions from SNP 131650 to 132250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,611 DEBUG Processing 637/639 atomic regions from SNP 191069 to 191669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,646 DEBUG Processing 440/710 atomic regions from SNP 131950 to 132550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:30,835 DEBUG Processing 638/639 atomic regions from SNP 191369 to 191969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,881 DEBUG Processing 441/710 atomic regions from SNP 132250 to 132850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,055 DEBUG Processing 639/639 atomic regions from SNP 191669 to 192269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:31,107 DEBUG Processing 442/710 atomic regions from SNP 132550 to 133150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,197 DEBUG Unique SNPs positions in subchromosome 3: 192270 2025-01-31 09:49:31,341 DEBUG Processing 443/710 atomic regions from SNP 132850 to 133450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,406 DEBUG Segmenting atomic regions: 2025-01-31 09:49:31,501 DEBUG Processing 1/705 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:31,573 DEBUG Processing 444/710 atomic regions from SNP 133150 to 133750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,761 DEBUG Processing 2/705 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:31,799 DEBUG Processing 445/710 atomic regions from SNP 133450 to 134050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:31,995 DEBUG Processing 3/705 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,032 DEBUG Processing 446/710 atomic regions from SNP 133750 to 134350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,236 DEBUG Processing 4/705 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,269 DEBUG Processing 447/710 atomic regions from SNP 134050 to 134650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,467 DEBUG Processing 5/705 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,498 DEBUG Processing 448/710 atomic regions from SNP 134350 to 134950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,701 DEBUG Processing 6/705 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,727 DEBUG Processing 449/710 atomic regions from SNP 134650 to 135250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:32,957 DEBUG Processing 7/705 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:32,962 DEBUG Processing 450/710 atomic regions from SNP 134950 to 135550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,189 DEBUG Subchromosome time: 168.93934250599705, subchromosome SNPs: 192270 2025-01-31 09:49:33,190 DEBUG Estimated BADs: [0.00, 0.15, 0.88, 3.53, 0.88, 3.53, 1.76, 0.44, 1.76, 7.06, 0.44, 4.41, 1.76, 0.88, 1.76, 0.15, 0.88, 0.18, 0.44, 0.88] SNP counts: [12, 107, 20526, 3974, 14071, 2788, 7249, 11956, 11598, 652, 2037, 2605, 27907, 5094, 11150, 8348, 2714, 11370, 42328, 5903] SNP IDs counts: [12, 107, 20526, 3974, 14071, 2788, 7249, 11956, 11598, 652, 2037, 2605, 27907, 5094, 11150, 8348, 2714, 11370, 42328, 5903] Critical gap: 630225bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.03Mbp], 3.33Mbp[0.65Mbp], 5.09Mbp[0.75Mbp], 19.70Mbp, 21.81Mbp, 29.89Mbp, 31.36Mbp, 35.25Mbp, 45.28Mbp, 51.98Mbp, 52.33Mbp, 54.22Mbp, 55.61Mbp, 71.26Mbp, 74.21Mbp, 80.29Mbp, 86.02Mbp, 87.56Mbp, 95.31Mbp, 121.27Mbp, 124.90Mbp] 2025-01-31 09:49:33,190 DEBUG chr14 time: 168.93992077198345 s 2025-01-31 09:49:33,196 DEBUG Processing 451/710 atomic regions from SNP 135250 to 135850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,202 DEBUG Processing 8/705 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:33,323 DEBUG chr14: Fitting background model for 19 segments 2025-01-31 09:49:33,428 DEBUG Processing 452/710 atomic regions from SNP 135550 to 136150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,442 DEBUG Processing 9/705 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:33,532 DEBUG Segmenting atomic regions: 2025-01-31 09:49:33,623 DEBUG Processing 1/667 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:33,673 DEBUG Processing 453/710 atomic regions from SNP 135850 to 136450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,689 DEBUG Processing 10/705 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:33,868 DEBUG Processing 2/667 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:33,919 DEBUG Processing 454/710 atomic regions from SNP 136150 to 136750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:33,939 DEBUG Processing 11/705 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,107 DEBUG Processing 3/667 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:34,154 DEBUG Processing 455/710 atomic regions from SNP 136450 to 137050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,200 DEBUG Processing 12/705 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,262 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:49:34,264 DEBUG chr15: Signal quantile: 0.993. signal threshold: 11. Best RMSEA: 0.018 2025-01-31 09:49:34,351 DEBUG Processing 4/667 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:34,392 DEBUG Processing 456/710 atomic regions from SNP 136750 to 137350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,460 DEBUG Processing 13/705 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,600 DEBUG Processing 5/667 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:34,635 DEBUG Processing 457/710 atomic regions from SNP 137050 to 137650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,711 DEBUG Processing 14/705 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:34,860 DEBUG Processing 6/667 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:34,884 DEBUG Processing 458/710 atomic regions from SNP 137350 to 137950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:34,968 DEBUG Processing 15/705 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,111 DEBUG Processing 7/667 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:35,134 DEBUG Processing 459/710 atomic regions from SNP 137650 to 138250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,204 DEBUG Processing 16/705 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,343 DEBUG Processing 8/667 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:35,369 DEBUG Processing 460/710 atomic regions from SNP 137950 to 138550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,437 DEBUG Processing 17/705 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,576 DEBUG Processing 9/667 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:35,606 DEBUG Processing 461/710 atomic regions from SNP 138250 to 138850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,697 DEBUG Processing 18/705 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:35,810 DEBUG Processing 10/667 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:35,842 DEBUG Processing 462/710 atomic regions from SNP 138550 to 139150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:35,949 DEBUG Processing 19/705 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,049 DEBUG Processing 11/667 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:36,084 DEBUG Processing 463/710 atomic regions from SNP 138850 to 139450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,191 DEBUG Processing 20/705 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,220 DEBUG chr15 total SNP count: 176120 2025-01-31 09:49:36,221 DEBUG chr15 length: 104043685 2025-01-31 09:49:36,221 DEBUG ----------------------------------------- 2025-01-31 09:49:36,221 INFO Processing SNPs in chr15 2025-01-31 09:49:36,298 DEBUG Processing 12/667 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:36,329 DEBUG Processing 464/710 atomic regions from SNP 139150 to 139750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,401 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 176120)] 2025-01-31 09:49:36,445 DEBUG Processing 21/705 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,524 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:36,540 DEBUG Processing 13/667 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:36,565 DEBUG Processing 465/710 atomic regions from SNP 139450 to 140050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,713 DEBUG Processing 22/705 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:36,776 DEBUG Processing 14/667 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:36,798 DEBUG Processing 466/710 atomic regions from SNP 139750 to 140350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:36,969 DEBUG Processing 23/705 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,012 DEBUG Processing 15/667 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:37,031 DEBUG Processing 467/710 atomic regions from SNP 140050 to 140650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,220 DEBUG Processing 24/705 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,254 DEBUG Processing 16/667 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:37,274 DEBUG Processing 468/710 atomic regions from SNP 140350 to 140950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,467 DEBUG Processing 25/705 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,496 DEBUG Processing 17/667 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:37,517 DEBUG Processing 469/710 atomic regions from SNP 140650 to 141250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,713 DEBUG Processing 26/705 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,736 DEBUG Processing 18/667 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:37,750 DEBUG Processing 470/710 atomic regions from SNP 140950 to 141550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:37,941 DEBUG Segmenting atomic regions: 2025-01-31 09:49:37,959 DEBUG Processing 27/705 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:37,972 DEBUG Processing 19/667 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:37,976 DEBUG Processing 471/710 atomic regions from SNP 141250 to 141850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,028 DEBUG Processing 1/644 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:38,208 DEBUG Processing 28/705 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,214 DEBUG Processing 472/710 atomic regions from SNP 141550 to 142150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,218 DEBUG Processing 20/667 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:38,234 DEBUG Processing 2/644 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:38,448 DEBUG Processing 3/644 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:38,449 DEBUG Processing 29/705 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,451 DEBUG Processing 473/710 atomic regions from SNP 141850 to 142450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,456 DEBUG Processing 21/667 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:38,659 DEBUG Processing 4/644 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:38,686 DEBUG Processing 30/705 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:38,686 DEBUG Processing 474/710 atomic regions from SNP 142150 to 142750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,690 DEBUG Processing 22/667 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:38,867 DEBUG Processing 5/644 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:38,917 DEBUG Processing 475/710 atomic regions from SNP 142450 to 143050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:38,920 DEBUG Processing 23/667 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:38,920 DEBUG Processing 31/705 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,083 DEBUG Processing 6/644 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:39,149 DEBUG Processing 476/710 atomic regions from SNP 142750 to 143350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,150 DEBUG Processing 24/667 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:39,155 DEBUG Processing 32/705 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,305 DEBUG Processing 7/644 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:39,370 DEBUG Processing 477/710 atomic regions from SNP 143050 to 143650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,374 DEBUG Processing 25/667 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:39,381 DEBUG Processing 33/705 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,504 DEBUG Processing 8/644 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:39,589 DEBUG Processing 478/710 atomic regions from SNP 143350 to 143950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,599 DEBUG Processing 26/667 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:39,607 DEBUG Processing 34/705 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,703 DEBUG Processing 9/644 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:39,812 DEBUG Processing 479/710 atomic regions from SNP 143650 to 144250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:39,823 DEBUG Processing 27/667 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:39,835 DEBUG Processing 35/705 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:39,909 DEBUG Processing 10/644 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:40,031 DEBUG Processing 480/710 atomic regions from SNP 143950 to 144550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,041 DEBUG Processing 28/667 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,056 DEBUG Processing 36/705 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,115 DEBUG Processing 11/644 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:40,252 DEBUG Processing 481/710 atomic regions from SNP 144250 to 144850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,265 DEBUG Processing 29/667 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,285 DEBUG Processing 37/705 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,333 DEBUG Processing 12/644 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:40,476 DEBUG Processing 482/710 atomic regions from SNP 144550 to 145150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,491 DEBUG Processing 30/667 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,517 DEBUG Processing 38/705 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,536 DEBUG Processing 13/644 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:40,696 DEBUG Processing 483/710 atomic regions from SNP 144850 to 145450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,713 DEBUG Processing 31/667 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,740 DEBUG Processing 14/644 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:40,745 DEBUG Processing 39/705 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:40,918 DEBUG Processing 484/710 atomic regions from SNP 145150 to 145750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:40,935 DEBUG Processing 32/667 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:40,940 DEBUG Processing 15/644 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:40,969 DEBUG Processing 40/705 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,147 DEBUG Processing 485/710 atomic regions from SNP 145450 to 146050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,148 DEBUG Processing 16/644 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:41,163 DEBUG Processing 33/667 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,194 DEBUG Processing 41/705 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,359 DEBUG Processing 17/644 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:41,380 DEBUG Processing 486/710 atomic regions from SNP 145750 to 146350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,394 DEBUG Processing 34/667 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,429 DEBUG Processing 42/705 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,565 DEBUG Processing 18/644 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:41,609 DEBUG Processing 487/710 atomic regions from SNP 146050 to 146650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,623 DEBUG Processing 35/667 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,663 DEBUG Processing 43/705 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,770 DEBUG Processing 19/644 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:41,838 DEBUG Processing 488/710 atomic regions from SNP 146350 to 146950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:41,848 DEBUG Processing 36/667 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:41,890 DEBUG Processing 44/705 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:41,971 DEBUG Processing 20/644 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:42,067 DEBUG Processing 489/710 atomic regions from SNP 146650 to 147250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,078 DEBUG Processing 37/667 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,120 DEBUG Processing 45/705 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,171 DEBUG Processing 21/644 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:42,296 DEBUG Processing 490/710 atomic regions from SNP 146950 to 147550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,311 DEBUG Processing 38/667 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,357 DEBUG Processing 46/705 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,377 DEBUG Processing 22/644 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:42,521 DEBUG Processing 491/710 atomic regions from SNP 147250 to 147850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,540 DEBUG Processing 39/667 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,588 DEBUG Processing 23/644 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:42,594 DEBUG Processing 47/705 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,738 DEBUG Processing 492/710 atomic regions from SNP 147550 to 148150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,759 DEBUG Processing 40/667 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,788 DEBUG Processing 24/644 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:42,829 DEBUG Processing 48/705 atomic regions from SNP 14147 to 14747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:42,960 DEBUG Processing 493/710 atomic regions from SNP 147850 to 148450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:42,971 DEBUG Processing 41/667 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:42,987 DEBUG Processing 25/644 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:43,059 DEBUG Processing 49/705 atomic regions from SNP 14447 to 15047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,187 DEBUG Processing 494/710 atomic regions from SNP 148150 to 148750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,189 DEBUG Processing 42/667 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,190 DEBUG Processing 26/644 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:43,284 DEBUG Processing 50/705 atomic regions from SNP 14747 to 15347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,397 DEBUG Processing 27/644 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:43,410 DEBUG Processing 43/667 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,415 DEBUG Processing 495/710 atomic regions from SNP 148450 to 149050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,512 DEBUG Processing 51/705 atomic regions from SNP 15047 to 15647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,601 DEBUG Processing 28/644 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:43,627 DEBUG Processing 44/667 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,642 DEBUG Processing 496/710 atomic regions from SNP 148750 to 149350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,734 DEBUG Processing 52/705 atomic regions from SNP 15347 to 15947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,804 DEBUG Processing 29/644 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:43,845 DEBUG Processing 45/667 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:43,868 DEBUG Processing 497/710 atomic regions from SNP 149050 to 149650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:43,954 DEBUG Processing 53/705 atomic regions from SNP 15647 to 16247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:43,998 DEBUG Processing 30/644 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:44,072 DEBUG Processing 46/667 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,098 DEBUG Processing 498/710 atomic regions from SNP 149350 to 149950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,174 DEBUG Processing 54/705 atomic regions from SNP 15947 to 16547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,193 DEBUG Processing 31/644 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:44,299 DEBUG Processing 47/667 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,325 DEBUG Processing 499/710 atomic regions from SNP 149650 to 150250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,399 DEBUG Processing 55/705 atomic regions from SNP 16247 to 16847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,402 DEBUG Processing 32/644 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:44,522 DEBUG Processing 48/667 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,550 DEBUG Processing 500/710 atomic regions from SNP 149950 to 150550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,621 DEBUG Processing 33/644 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:44,629 DEBUG Processing 56/705 atomic regions from SNP 16547 to 17147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,734 DEBUG Processing 49/667 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,767 DEBUG Processing 501/710 atomic regions from SNP 150250 to 150850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:44,828 DEBUG Processing 34/644 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:44,865 DEBUG Processing 57/705 atomic regions from SNP 16847 to 17447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:44,948 DEBUG Processing 50/667 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:44,986 DEBUG Processing 502/710 atomic regions from SNP 150550 to 151150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,031 DEBUG Processing 35/644 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:45,097 DEBUG Processing 58/705 atomic regions from SNP 17147 to 17747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,169 DEBUG Processing 51/667 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,210 DEBUG Processing 503/710 atomic regions from SNP 150850 to 151450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,233 DEBUG Processing 36/644 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:45,328 DEBUG Processing 59/705 atomic regions from SNP 17447 to 18047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,390 DEBUG Processing 52/667 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,434 DEBUG Processing 37/644 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:45,434 DEBUG Processing 504/710 atomic regions from SNP 151150 to 151750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,562 DEBUG Processing 60/705 atomic regions from SNP 17747 to 18347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,611 DEBUG Processing 53/667 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,638 DEBUG Processing 38/644 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:45,660 DEBUG Processing 505/710 atomic regions from SNP 151450 to 152050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:45,798 DEBUG Processing 61/705 atomic regions from SNP 18047 to 18647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:45,836 DEBUG Processing 54/667 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:45,846 DEBUG Processing 39/644 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:45,886 DEBUG Processing 506/710 atomic regions from SNP 151750 to 152350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,036 DEBUG Processing 62/705 atomic regions from SNP 18347 to 18947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,058 DEBUG Processing 40/644 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:46,069 DEBUG Processing 55/667 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,116 DEBUG Processing 507/710 atomic regions from SNP 152050 to 152650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,264 DEBUG Processing 41/644 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:46,270 DEBUG Processing 63/705 atomic regions from SNP 18647 to 19247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,301 DEBUG Processing 56/667 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,347 DEBUG Processing 508/710 atomic regions from SNP 152350 to 152950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,468 DEBUG Processing 42/644 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:46,502 DEBUG Processing 64/705 atomic regions from SNP 18947 to 19547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,534 DEBUG Processing 57/667 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,574 DEBUG Processing 509/710 atomic regions from SNP 152650 to 153250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,671 DEBUG Processing 43/644 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:46,731 DEBUG Processing 65/705 atomic regions from SNP 19247 to 19847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,764 DEBUG Processing 58/667 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:46,799 DEBUG Processing 510/710 atomic regions from SNP 152950 to 153550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:46,871 DEBUG Processing 44/644 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:46,957 DEBUG Processing 66/705 atomic regions from SNP 19547 to 20147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:46,994 DEBUG Processing 59/667 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,030 DEBUG Processing 511/710 atomic regions from SNP 153250 to 153850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,076 DEBUG Processing 45/644 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:47,180 DEBUG Processing 67/705 atomic regions from SNP 19847 to 20447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,222 DEBUG Processing 60/667 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,261 DEBUG Processing 512/710 atomic regions from SNP 153550 to 154150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,288 DEBUG Processing 46/644 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:47,392 DEBUG Processing 68/705 atomic regions from SNP 20147 to 20747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,443 DEBUG Processing 61/667 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,490 DEBUG Processing 513/710 atomic regions from SNP 153850 to 154450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,499 DEBUG Processing 47/644 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:47,613 DEBUG Processing 69/705 atomic regions from SNP 20447 to 21047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,660 DEBUG Processing 62/667 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,703 DEBUG Processing 48/644 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:47,717 DEBUG Processing 514/710 atomic regions from SNP 154150 to 154750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:47,843 DEBUG Processing 70/705 atomic regions from SNP 20747 to 21347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:47,890 DEBUG Processing 63/667 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:47,913 DEBUG Processing 49/644 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:47,946 DEBUG Processing 515/710 atomic regions from SNP 154450 to 155050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,070 DEBUG Processing 71/705 atomic regions from SNP 21047 to 21647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,111 DEBUG Processing 64/667 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,118 DEBUG Processing 50/644 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:48,173 DEBUG Processing 516/710 atomic regions from SNP 154750 to 155350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,296 DEBUG Processing 72/705 atomic regions from SNP 21347 to 21947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,322 DEBUG Processing 51/644 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:48,334 DEBUG Processing 65/667 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,400 DEBUG Processing 517/710 atomic regions from SNP 155050 to 155650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,527 DEBUG Processing 52/644 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:48,529 DEBUG Processing 73/705 atomic regions from SNP 21647 to 22247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,560 DEBUG Processing 66/667 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,624 DEBUG Processing 518/710 atomic regions from SNP 155350 to 155950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,731 DEBUG Processing 53/644 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:48,763 DEBUG Processing 74/705 atomic regions from SNP 21947 to 22547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:48,785 DEBUG Processing 67/667 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:48,846 DEBUG Processing 519/710 atomic regions from SNP 155650 to 156250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:48,927 DEBUG Processing 54/644 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:48,993 DEBUG Processing 75/705 atomic regions from SNP 22247 to 22847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,015 DEBUG Processing 68/667 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,069 DEBUG Processing 520/710 atomic regions from SNP 155950 to 156550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,131 DEBUG Processing 55/644 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:49,223 DEBUG Processing 76/705 atomic regions from SNP 22547 to 23147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,246 DEBUG Processing 69/667 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,292 DEBUG Processing 521/710 atomic regions from SNP 156250 to 156850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,336 DEBUG Processing 56/644 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:49,443 DEBUG Processing 77/705 atomic regions from SNP 22847 to 23447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,468 DEBUG Processing 70/667 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,520 DEBUG Processing 522/710 atomic regions from SNP 156550 to 157150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,543 DEBUG Processing 57/644 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:49,665 DEBUG Processing 78/705 atomic regions from SNP 23147 to 23747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,686 DEBUG Processing 71/667 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,746 DEBUG Processing 523/710 atomic regions from SNP 156850 to 157450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:49,750 DEBUG Processing 58/644 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:49,879 DEBUG Processing 79/705 atomic regions from SNP 23447 to 24047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:49,894 DEBUG Processing 72/667 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:49,948 DEBUG Processing 59/644 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:49,966 DEBUG Processing 524/710 atomic regions from SNP 157150 to 157750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,098 DEBUG Processing 80/705 atomic regions from SNP 23747 to 24347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,103 DEBUG Processing 73/667 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,148 DEBUG Processing 60/644 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:50,185 DEBUG Processing 525/710 atomic regions from SNP 157450 to 158050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,322 DEBUG Processing 74/667 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,323 DEBUG Processing 81/705 atomic regions from SNP 24047 to 24647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,356 DEBUG Processing 61/644 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:50,412 DEBUG Processing 526/710 atomic regions from SNP 157750 to 158350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,542 DEBUG Processing 75/667 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,550 DEBUG Processing 82/705 atomic regions from SNP 24347 to 24947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,562 DEBUG Processing 62/644 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:50,634 DEBUG Processing 527/710 atomic regions from SNP 158050 to 158650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,767 DEBUG Processing 76/667 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:50,769 DEBUG Processing 63/644 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:50,778 DEBUG Processing 83/705 atomic regions from SNP 24647 to 25247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:50,856 DEBUG Processing 528/710 atomic regions from SNP 158350 to 158950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:50,975 DEBUG Processing 64/644 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:50,990 DEBUG Processing 77/667 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,004 DEBUG Processing 84/705 atomic regions from SNP 24947 to 25547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,070 DEBUG Processing 529/710 atomic regions from SNP 158650 to 159250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,171 DEBUG Processing 65/644 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:51,214 DEBUG Processing 78/667 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,235 DEBUG Processing 85/705 atomic regions from SNP 25247 to 25847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,293 DEBUG Processing 530/710 atomic regions from SNP 158950 to 159550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,368 DEBUG Processing 66/644 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:51,431 DEBUG Processing 79/667 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,457 DEBUG Processing 86/705 atomic regions from SNP 25547 to 26147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,514 DEBUG Processing 531/710 atomic regions from SNP 159250 to 159850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,565 DEBUG Processing 67/644 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:51,640 DEBUG Processing 80/667 atomic regions from SNP 23779 to 24379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,674 DEBUG Processing 87/705 atomic regions from SNP 25847 to 26447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,729 DEBUG Processing 532/710 atomic regions from SNP 159550 to 160150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,762 DEBUG Processing 68/644 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:51,847 DEBUG Processing 81/667 atomic regions from SNP 24079 to 24679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:51,885 DEBUG Processing 88/705 atomic regions from SNP 26147 to 26747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:51,942 DEBUG Processing 533/710 atomic regions from SNP 159850 to 160450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:51,953 DEBUG Processing 69/644 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:52,055 DEBUG Processing 82/667 atomic regions from SNP 24379 to 24979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,097 DEBUG Processing 89/705 atomic regions from SNP 26447 to 27047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,150 DEBUG Processing 70/644 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:52,161 DEBUG Processing 534/710 atomic regions from SNP 160150 to 160750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,272 DEBUG Processing 83/667 atomic regions from SNP 24679 to 25279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,319 DEBUG Processing 90/705 atomic regions from SNP 26747 to 27347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,358 DEBUG Processing 71/644 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:52,391 DEBUG Processing 535/710 atomic regions from SNP 160450 to 161050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,494 DEBUG Processing 84/667 atomic regions from SNP 24979 to 25579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,543 DEBUG Processing 91/705 atomic regions from SNP 27047 to 27647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,562 DEBUG Processing 72/644 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:52,613 DEBUG Processing 536/710 atomic regions from SNP 160750 to 161350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,721 DEBUG Processing 85/667 atomic regions from SNP 25279 to 25879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,768 DEBUG Processing 73/644 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:52,774 DEBUG Processing 92/705 atomic regions from SNP 27347 to 27947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:52,852 DEBUG Processing 537/710 atomic regions from SNP 161050 to 161650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:52,941 DEBUG Processing 86/667 atomic regions from SNP 25579 to 26179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:52,972 DEBUG Processing 74/644 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:53,003 DEBUG Processing 93/705 atomic regions from SNP 27647 to 28247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,083 DEBUG Processing 538/710 atomic regions from SNP 161350 to 161950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,147 DEBUG Processing 87/667 atomic regions from SNP 25879 to 26479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,171 DEBUG Processing 75/644 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:53,226 DEBUG Processing 94/705 atomic regions from SNP 27947 to 28547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,299 DEBUG Processing 539/710 atomic regions from SNP 161650 to 162250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,353 DEBUG Processing 88/667 atomic regions from SNP 26179 to 26779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,362 DEBUG Processing 76/644 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:53,442 DEBUG Processing 95/705 atomic regions from SNP 28247 to 28847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,511 DEBUG Processing 540/710 atomic regions from SNP 161950 to 162550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,557 DEBUG Processing 77/644 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:53,562 DEBUG Processing 89/667 atomic regions from SNP 26479 to 27079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,655 DEBUG Processing 96/705 atomic regions from SNP 28547 to 29147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,725 DEBUG Processing 541/710 atomic regions from SNP 162250 to 162850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,751 DEBUG Processing 78/644 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:53,771 DEBUG Processing 90/667 atomic regions from SNP 26779 to 27379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:53,867 DEBUG Processing 97/705 atomic regions from SNP 28847 to 29447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:53,948 DEBUG Processing 542/710 atomic regions from SNP 162550 to 163150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:53,954 DEBUG Processing 79/644 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:53,987 DEBUG Processing 91/667 atomic regions from SNP 27079 to 27679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,076 DEBUG Processing 98/705 atomic regions from SNP 29147 to 29747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,154 DEBUG Processing 80/644 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:54,168 DEBUG Processing 543/710 atomic regions from SNP 162850 to 163450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,206 DEBUG Processing 92/667 atomic regions from SNP 27379 to 27979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,289 DEBUG Processing 99/705 atomic regions from SNP 29447 to 30047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,331 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:49:54,349 DEBUG Processing 81/644 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:54,387 DEBUG Processing 544/710 atomic regions from SNP 163150 to 163750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,420 DEBUG Processing 93/667 atomic regions from SNP 27679 to 28279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,518 DEBUG Processing 100/705 atomic regions from SNP 29747 to 30347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,548 DEBUG Processing 82/644 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:54,607 DEBUG Processing 545/710 atomic regions from SNP 163450 to 164050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,628 DEBUG Processing 94/667 atomic regions from SNP 27979 to 28579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,748 DEBUG Processing 101/705 atomic regions from SNP 30047 to 30647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:54,756 DEBUG Processing 83/644 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:54,828 DEBUG Processing 546/710 atomic regions from SNP 163750 to 164350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:54,837 DEBUG Processing 95/667 atomic regions from SNP 28279 to 28879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:54,965 DEBUG Processing 84/644 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:54,977 DEBUG Processing 102/705 atomic regions from SNP 30347 to 30947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,048 DEBUG Processing 547/710 atomic regions from SNP 164050 to 164650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,049 DEBUG Processing 96/667 atomic regions from SNP 28579 to 29179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,172 DEBUG Processing 85/644 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:55,205 DEBUG Processing 103/705 atomic regions from SNP 30647 to 31247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,270 DEBUG Processing 97/667 atomic regions from SNP 28879 to 29479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,272 DEBUG Processing 548/710 atomic regions from SNP 164350 to 164950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,374 DEBUG Processing 86/644 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:55,431 DEBUG Processing 104/705 atomic regions from SNP 30947 to 31547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,493 DEBUG Processing 549/710 atomic regions from SNP 164650 to 165250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,496 DEBUG Processing 98/667 atomic regions from SNP 29179 to 29779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,571 DEBUG Processing 87/644 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:55,650 DEBUG Processing 105/705 atomic regions from SNP 31247 to 31847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,721 DEBUG Processing 550/710 atomic regions from SNP 164950 to 165550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,722 DEBUG Processing 99/667 atomic regions from SNP 29479 to 30079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:55,765 DEBUG Processing 88/644 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:55,866 DEBUG Processing 106/705 atomic regions from SNP 31547 to 32147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:55,955 DEBUG Processing 551/710 atomic regions from SNP 165250 to 165850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:55,971 DEBUG Processing 89/644 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:55,971 DEBUG Processing 100/667 atomic regions from SNP 29779 to 30379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,083 DEBUG Processing 107/705 atomic regions from SNP 31847 to 32447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,185 DEBUG Processing 90/644 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:56,193 DEBUG Processing 552/710 atomic regions from SNP 165550 to 166150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,219 DEBUG Processing 101/667 atomic regions from SNP 30079 to 30679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,301 DEBUG Processing 108/705 atomic regions from SNP 32147 to 32747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,393 DEBUG Processing 91/644 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:56,428 DEBUG Processing 553/710 atomic regions from SNP 165850 to 166450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,448 DEBUG Processing 102/667 atomic regions from SNP 30379 to 30979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,524 DEBUG Processing 109/705 atomic regions from SNP 32447 to 33047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,597 DEBUG Processing 92/644 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:56,661 DEBUG Processing 554/710 atomic regions from SNP 166150 to 166750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,688 DEBUG Processing 103/667 atomic regions from SNP 30679 to 31279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,753 DEBUG Processing 110/705 atomic regions from SNP 32747 to 33347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:56,798 DEBUG Processing 93/644 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:56,891 DEBUG Processing 555/710 atomic regions from SNP 166450 to 167050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:56,955 DEBUG Processing 104/667 atomic regions from SNP 30979 to 31579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:56,991 DEBUG Processing 111/705 atomic regions from SNP 33047 to 33647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,012 DEBUG Processing 94/644 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:57,114 DEBUG Processing 556/710 atomic regions from SNP 166750 to 167350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,219 DEBUG Processing 95/644 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:57,220 DEBUG Processing 105/667 atomic regions from SNP 31279 to 31879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,225 DEBUG Processing 112/705 atomic regions from SNP 33347 to 33947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,332 DEBUG Processing 557/710 atomic regions from SNP 167050 to 167650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,428 DEBUG Processing 96/644 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:57,452 DEBUG Processing 106/667 atomic regions from SNP 31579 to 32179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,478 DEBUG Processing 113/705 atomic regions from SNP 33647 to 34247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,553 DEBUG Processing 558/710 atomic regions from SNP 167350 to 167950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,638 DEBUG Processing 97/644 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:57,683 DEBUG Processing 107/667 atomic regions from SNP 31879 to 32479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,727 DEBUG Processing 114/705 atomic regions from SNP 33947 to 34547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,778 DEBUG Processing 559/710 atomic regions from SNP 167650 to 168250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:57,843 DEBUG Processing 98/644 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:57,916 DEBUG Processing 108/667 atomic regions from SNP 32179 to 32779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:57,970 DEBUG Processing 115/705 atomic regions from SNP 34247 to 34847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:57,976 DEBUG Segmenting atomic regions: 2025-01-31 09:49:58,014 DEBUG Processing 560/710 atomic regions from SNP 167950 to 168550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,058 DEBUG Processing 1/586 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:58,071 DEBUG Processing 99/644 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,146 DEBUG Processing 109/667 atomic regions from SNP 32479 to 33079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,214 DEBUG Processing 116/705 atomic regions from SNP 34547 to 35147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,246 DEBUG Processing 561/710 atomic regions from SNP 168250 to 168850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,260 DEBUG Processing 2/586 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:58,289 DEBUG Processing 100/644 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,368 DEBUG Processing 110/667 atomic regions from SNP 32779 to 33379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,449 DEBUG Processing 117/705 atomic regions from SNP 34847 to 35447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,470 DEBUG Processing 3/586 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:58,483 DEBUG Processing 562/710 atomic regions from SNP 168550 to 169150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,504 DEBUG Processing 101/644 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,618 DEBUG Processing 111/667 atomic regions from SNP 33079 to 33679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,677 DEBUG Processing 4/586 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:58,683 DEBUG Processing 118/705 atomic regions from SNP 35147 to 35747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,715 DEBUG Processing 102/644 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,716 DEBUG Processing 563/710 atomic regions from SNP 168850 to 169450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:58,871 DEBUG Processing 112/667 atomic regions from SNP 33379 to 33979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:58,876 DEBUG Processing 5/586 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:58,910 DEBUG Processing 119/705 atomic regions from SNP 35447 to 36047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:58,918 DEBUG Processing 103/644 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:58,941 DEBUG Processing 564/710 atomic regions from SNP 169150 to 169750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,109 DEBUG Processing 6/586 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:59,121 DEBUG Processing 113/667 atomic regions from SNP 33679 to 34279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,123 DEBUG Processing 104/644 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,138 DEBUG Processing 120/705 atomic regions from SNP 35747 to 36347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,167 DEBUG Processing 565/710 atomic regions from SNP 169450 to 170050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,314 DEBUG Processing 7/586 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:59,332 DEBUG Processing 105/644 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,362 DEBUG Processing 121/705 atomic regions from SNP 36047 to 36647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,369 DEBUG Processing 114/667 atomic regions from SNP 33979 to 34579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,394 DEBUG Processing 566/710 atomic regions from SNP 169750 to 170350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,520 DEBUG Processing 8/586 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:59,545 DEBUG Processing 106/644 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,594 DEBUG Processing 115/667 atomic regions from SNP 34279 to 34879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,595 DEBUG Processing 122/705 atomic regions from SNP 36347 to 36947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,626 DEBUG Processing 567/710 atomic regions from SNP 170050 to 170650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,723 DEBUG Processing 9/586 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:59,752 DEBUG Processing 107/644 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:49:59,821 DEBUG Processing 116/667 atomic regions from SNP 34579 to 35179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:49:59,828 DEBUG Processing 123/705 atomic regions from SNP 36647 to 37247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:49:59,863 DEBUG Processing 568/710 atomic regions from SNP 170350 to 170950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:49:59,927 DEBUG Processing 10/586 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:49:59,960 DEBUG Processing 108/644 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,045 DEBUG Processing 117/667 atomic regions from SNP 34879 to 35479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,058 DEBUG Processing 124/705 atomic regions from SNP 36947 to 37547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,095 DEBUG Processing 569/710 atomic regions from SNP 170650 to 171250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,132 DEBUG Processing 11/586 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:00,171 DEBUG Processing 109/644 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,270 DEBUG Processing 118/667 atomic regions from SNP 35179 to 35779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,291 DEBUG Processing 125/705 atomic regions from SNP 37247 to 37847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,323 DEBUG Processing 570/710 atomic regions from SNP 170950 to 171550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,359 DEBUG Processing 12/586 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:00,384 DEBUG Processing 110/644 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,513 DEBUG Processing 119/667 atomic regions from SNP 35479 to 36079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,526 DEBUG Processing 126/705 atomic regions from SNP 37547 to 38147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,556 DEBUG Processing 571/710 atomic regions from SNP 171250 to 171850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,594 DEBUG Processing 111/644 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,597 DEBUG Processing 13/586 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:00,751 DEBUG Processing 120/667 atomic regions from SNP 35779 to 36379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:00,767 DEBUG Processing 127/705 atomic regions from SNP 37847 to 38447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:00,782 DEBUG Processing 572/710 atomic regions from SNP 171550 to 172150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:00,797 DEBUG Processing 112/644 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:00,803 DEBUG Processing 14/586 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:01,094 DEBUG Processing 121/667 atomic regions from SNP 36079 to 36679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,096 DEBUG Processing 573/710 atomic regions from SNP 171850 to 172450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,108 DEBUG Processing 113/644 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,110 DEBUG Processing 128/705 atomic regions from SNP 38147 to 38747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,127 DEBUG Processing 15/586 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:01,308 DEBUG Processing 114/644 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,316 DEBUG Processing 122/667 atomic regions from SNP 36379 to 36979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,317 DEBUG Processing 574/710 atomic regions from SNP 172150 to 172750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,329 DEBUG Processing 16/586 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:01,341 DEBUG Processing 129/705 atomic regions from SNP 38447 to 39047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,501 DEBUG Processing 115/644 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,523 DEBUG Processing 17/586 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:01,532 DEBUG Processing 123/667 atomic regions from SNP 36679 to 37279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,533 DEBUG Processing 575/710 atomic regions from SNP 172450 to 173050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,576 DEBUG Processing 130/705 atomic regions from SNP 38747 to 39347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,699 DEBUG Processing 116/644 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,714 DEBUG Processing 18/586 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:01,746 DEBUG Processing 576/710 atomic regions from SNP 172750 to 173350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,754 DEBUG Processing 124/667 atomic regions from SNP 36979 to 37579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:01,804 DEBUG Processing 131/705 atomic regions from SNP 39047 to 39647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:01,895 DEBUG Processing 117/644 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:01,905 DEBUG Processing 19/586 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:01,960 DEBUG Processing 577/710 atomic regions from SNP 173050 to 173650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:01,969 DEBUG Processing 125/667 atomic regions from SNP 37279 to 37879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,021 DEBUG Processing 132/705 atomic regions from SNP 39347 to 39947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,093 DEBUG Processing 118/644 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,100 DEBUG Processing 20/586 atomic regions from SNP 5719 to 6319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:02,176 DEBUG Processing 578/710 atomic regions from SNP 173350 to 173950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,190 DEBUG Processing 126/667 atomic regions from SNP 37579 to 38179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,243 DEBUG Processing 133/705 atomic regions from SNP 39647 to 40247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,287 DEBUG Processing 119/644 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,315 DEBUG Processing 21/586 atomic regions from SNP 6019 to 6619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:02,398 DEBUG Processing 579/710 atomic regions from SNP 173650 to 174250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,414 DEBUG Processing 127/667 atomic regions from SNP 37879 to 38479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,473 DEBUG Processing 134/705 atomic regions from SNP 39947 to 40547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,479 DEBUG Processing 120/644 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,531 DEBUG Processing 22/586 atomic regions from SNP 6319 to 6919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:02,614 DEBUG Processing 580/710 atomic regions from SNP 173950 to 174550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,630 DEBUG Processing 128/667 atomic regions from SNP 38179 to 38779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,674 DEBUG Processing 121/644 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,707 DEBUG Processing 135/705 atomic regions from SNP 40247 to 40847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:02,731 DEBUG Processing 23/586 atomic regions from SNP 6619 to 7219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:02,829 DEBUG Processing 581/710 atomic regions from SNP 174250 to 174850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:02,846 DEBUG Processing 129/667 atomic regions from SNP 38479 to 39079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:02,870 DEBUG Processing 122/644 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:02,930 DEBUG Processing 24/586 atomic regions from SNP 6919 to 7519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:02,935 DEBUG Processing 136/705 atomic regions from SNP 40547 to 41147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,049 DEBUG Processing 582/710 atomic regions from SNP 174550 to 175150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,069 DEBUG Processing 130/667 atomic regions from SNP 38779 to 39379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,097 DEBUG Processing 123/644 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,125 DEBUG Processing 25/586 atomic regions from SNP 7219 to 7819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:03,160 DEBUG Processing 137/705 atomic regions from SNP 40847 to 41447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,272 DEBUG Processing 583/710 atomic regions from SNP 174850 to 175450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,293 DEBUG Processing 131/667 atomic regions from SNP 39079 to 39679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,303 DEBUG Processing 124/644 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,322 DEBUG Processing 26/586 atomic regions from SNP 7519 to 8119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:03,390 DEBUG Processing 138/705 atomic regions from SNP 41147 to 41747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,493 DEBUG Processing 584/710 atomic regions from SNP 175150 to 175750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,506 DEBUG Processing 125/644 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,513 DEBUG Processing 132/667 atomic regions from SNP 39379 to 39979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,522 DEBUG Processing 27/586 atomic regions from SNP 7819 to 8419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:03,625 DEBUG Processing 139/705 atomic regions from SNP 41447 to 42047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,712 DEBUG Processing 126/644 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,726 DEBUG Processing 585/710 atomic regions from SNP 175450 to 176050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,733 DEBUG Processing 133/667 atomic regions from SNP 39679 to 40279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:03,734 DEBUG Processing 28/586 atomic regions from SNP 8119 to 8719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:03,859 DEBUG Processing 140/705 atomic regions from SNP 41747 to 42347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:03,917 DEBUG Processing 127/644 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:03,950 DEBUG Processing 586/710 atomic regions from SNP 175750 to 176350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:03,953 DEBUG Processing 29/586 atomic regions from SNP 8419 to 9019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:03,960 DEBUG Processing 134/667 atomic regions from SNP 39979 to 40579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,091 DEBUG Processing 141/705 atomic regions from SNP 42047 to 42647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,124 DEBUG Processing 128/644 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,179 DEBUG Processing 587/710 atomic regions from SNP 176050 to 176650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,185 DEBUG Processing 30/586 atomic regions from SNP 8719 to 9319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:04,203 DEBUG Processing 135/667 atomic regions from SNP 40279 to 40879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,304 DEBUG Processing 142/705 atomic regions from SNP 42347 to 42947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,320 DEBUG Processing 129/644 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,405 DEBUG Processing 588/710 atomic regions from SNP 176350 to 176950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,414 DEBUG Processing 31/586 atomic regions from SNP 9019 to 9619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:04,443 DEBUG Processing 136/667 atomic regions from SNP 40579 to 41179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,511 DEBUG Processing 130/644 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,527 DEBUG Processing 143/705 atomic regions from SNP 42647 to 43247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,628 DEBUG Processing 589/710 atomic regions from SNP 176650 to 177250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,638 DEBUG Processing 32/586 atomic regions from SNP 9319 to 9919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:04,677 DEBUG Processing 137/667 atomic regions from SNP 40879 to 41479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,708 DEBUG Processing 131/644 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:04,762 DEBUG Processing 144/705 atomic regions from SNP 42947 to 43547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:04,827 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:50:04,829 DEBUG chr16: Signal quantile: 0.994. signal threshold: 10. Best RMSEA: 0.018 2025-01-31 09:50:04,850 DEBUG Processing 590/710 atomic regions from SNP 176950 to 177550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:04,868 DEBUG Processing 33/586 atomic regions from SNP 9619 to 10219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:04,898 DEBUG Processing 138/667 atomic regions from SNP 41179 to 41779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:04,906 DEBUG Processing 132/644 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,005 DEBUG Processing 145/705 atomic regions from SNP 43247 to 43847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,076 DEBUG Processing 591/710 atomic regions from SNP 177250 to 177850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,099 DEBUG Processing 34/586 atomic regions from SNP 9919 to 10519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:05,106 DEBUG Processing 133/644 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,110 DEBUG Processing 139/667 atomic regions from SNP 41479 to 42079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,246 DEBUG Processing 146/705 atomic regions from SNP 43547 to 44147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,304 DEBUG Processing 592/710 atomic regions from SNP 177550 to 178150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,314 DEBUG Processing 134/644 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,323 DEBUG Processing 35/586 atomic regions from SNP 10219 to 10819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:05,331 DEBUG Processing 140/667 atomic regions from SNP 41779 to 42379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,486 DEBUG Processing 147/705 atomic regions from SNP 43847 to 44447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,523 DEBUG Processing 135/644 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,532 DEBUG Processing 593/710 atomic regions from SNP 177850 to 178450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,548 DEBUG Processing 36/586 atomic regions from SNP 10519 to 11119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:05,559 DEBUG Processing 141/667 atomic regions from SNP 42079 to 42679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,724 DEBUG Processing 148/705 atomic regions from SNP 44147 to 44747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,732 DEBUG Processing 136/644 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,763 DEBUG Processing 594/710 atomic regions from SNP 178150 to 178750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,769 DEBUG Processing 37/586 atomic regions from SNP 10819 to 11419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:05,793 DEBUG Processing 142/667 atomic regions from SNP 42379 to 42979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:05,934 DEBUG Processing 137/644 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:05,958 DEBUG Processing 149/705 atomic regions from SNP 44447 to 45047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:05,992 DEBUG Processing 595/710 atomic regions from SNP 178450 to 179050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:05,997 DEBUG Processing 38/586 atomic regions from SNP 11119 to 11719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:06,023 DEBUG Processing 143/667 atomic regions from SNP 42679 to 43279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,134 DEBUG Processing 138/644 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,191 DEBUG Processing 150/705 atomic regions from SNP 44747 to 45347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,220 DEBUG Processing 596/710 atomic regions from SNP 178750 to 179350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,222 DEBUG Processing 39/586 atomic regions from SNP 11419 to 12019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:06,259 DEBUG Processing 144/667 atomic regions from SNP 42979 to 43579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,337 DEBUG Processing 139/644 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,413 DEBUG Processing 151/705 atomic regions from SNP 45047 to 45647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,428 DEBUG Processing 40/586 atomic regions from SNP 11719 to 12319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:06,441 DEBUG Processing 597/710 atomic regions from SNP 179050 to 179650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,484 DEBUG Processing 145/667 atomic regions from SNP 43279 to 43879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,543 DEBUG Processing 140/644 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,619 DEBUG Processing 41/586 atomic regions from SNP 12019 to 12619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:06,638 DEBUG Processing 152/705 atomic regions from SNP 45347 to 45947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,658 DEBUG Processing 598/710 atomic regions from SNP 179350 to 179950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,705 DEBUG Processing 146/667 atomic regions from SNP 43579 to 44179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,759 DEBUG Processing 141/644 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:06,781 DEBUG chr16 total SNP count: 164979 2025-01-31 09:50:06,782 DEBUG chr16 length: 98207768 2025-01-31 09:50:06,782 DEBUG ----------------------------------------- 2025-01-31 09:50:06,782 INFO Processing SNPs in chr16 2025-01-31 09:50:06,818 DEBUG Processing 42/586 atomic regions from SNP 12319 to 12919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:06,877 DEBUG Processing 153/705 atomic regions from SNP 45647 to 46247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:06,882 DEBUG Processing 599/710 atomic regions from SNP 179650 to 180250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:06,923 DEBUG Processing 147/667 atomic regions from SNP 43879 to 44479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:06,946 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 164979)] 2025-01-31 09:50:06,961 DEBUG Processing 142/644 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,035 DEBUG Processing 43/586 atomic regions from SNP 12619 to 13219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:07,060 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:07,109 DEBUG Processing 600/710 atomic regions from SNP 179950 to 180550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,114 DEBUG Processing 154/705 atomic regions from SNP 45947 to 46547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,146 DEBUG Processing 148/667 atomic regions from SNP 44179 to 44779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,188 DEBUG Processing 143/644 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,264 DEBUG Processing 44/586 atomic regions from SNP 12919 to 13519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:07,336 DEBUG Processing 601/710 atomic regions from SNP 180250 to 180850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,350 DEBUG Processing 155/705 atomic regions from SNP 46247 to 46847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,388 DEBUG Processing 149/667 atomic regions from SNP 44479 to 45079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,414 DEBUG Processing 144/644 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,479 DEBUG Processing 45/586 atomic regions from SNP 13219 to 13819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:07,562 DEBUG Processing 602/710 atomic regions from SNP 180550 to 181150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,580 DEBUG Processing 156/705 atomic regions from SNP 46547 to 47147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,614 DEBUG Processing 145/644 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,615 DEBUG Processing 150/667 atomic regions from SNP 44779 to 45379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,688 DEBUG Processing 46/586 atomic regions from SNP 13519 to 14119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:07,806 DEBUG Processing 603/710 atomic regions from SNP 180850 to 181450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:07,813 DEBUG Processing 157/705 atomic regions from SNP 46847 to 47447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:07,816 DEBUG Processing 146/644 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:07,837 DEBUG Processing 151/667 atomic regions from SNP 45079 to 45679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:07,907 DEBUG Processing 47/586 atomic regions from SNP 13819 to 14419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:08,027 DEBUG Processing 147/644 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,053 DEBUG Processing 158/705 atomic regions from SNP 47147 to 47747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,065 DEBUG Processing 152/667 atomic regions from SNP 45379 to 45979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,066 DEBUG Processing 604/710 atomic regions from SNP 181150 to 181750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,120 DEBUG Processing 48/586 atomic regions from SNP 14119 to 14719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:08,242 DEBUG Processing 148/644 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,297 DEBUG Processing 159/705 atomic regions from SNP 47447 to 48047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,301 DEBUG Processing 153/667 atomic regions from SNP 45679 to 46279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,311 DEBUG Processing 605/710 atomic regions from SNP 181450 to 182050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,344 DEBUG Processing 49/586 atomic regions from SNP 14419 to 15019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:08,439 DEBUG Processing 149/644 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,534 DEBUG Processing 154/667 atomic regions from SNP 45979 to 46579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,535 DEBUG Processing 160/705 atomic regions from SNP 47747 to 48347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,539 DEBUG Processing 606/710 atomic regions from SNP 181750 to 182350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,566 DEBUG Processing 50/586 atomic regions from SNP 14719 to 15319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:08,635 DEBUG Processing 150/644 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,758 DEBUG Processing 155/667 atomic regions from SNP 46279 to 46879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,769 DEBUG Processing 161/705 atomic regions from SNP 48047 to 48647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:08,773 DEBUG Processing 51/586 atomic regions from SNP 15019 to 15619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:08,791 DEBUG Processing 607/710 atomic regions from SNP 182050 to 182650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:08,840 DEBUG Processing 151/644 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:08,979 DEBUG Processing 156/667 atomic regions from SNP 46579 to 47179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:08,982 DEBUG Processing 52/586 atomic regions from SNP 15319 to 15919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:09,003 DEBUG Processing 162/705 atomic regions from SNP 48347 to 48947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,019 DEBUG Processing 608/710 atomic regions from SNP 182350 to 182950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,041 DEBUG Processing 152/644 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,203 DEBUG Processing 157/667 atomic regions from SNP 46879 to 47479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,212 DEBUG Processing 53/586 atomic regions from SNP 15619 to 16219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:09,234 DEBUG Processing 163/705 atomic regions from SNP 48647 to 49247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,244 DEBUG Processing 153/644 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,245 DEBUG Processing 609/710 atomic regions from SNP 182650 to 183250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,428 DEBUG Processing 158/667 atomic regions from SNP 47179 to 47779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,448 DEBUG Processing 154/644 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,450 DEBUG Processing 54/586 atomic regions from SNP 15919 to 16519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:09,465 DEBUG Processing 164/705 atomic regions from SNP 48947 to 49547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,486 DEBUG Processing 610/710 atomic regions from SNP 182950 to 183550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,653 DEBUG Processing 159/667 atomic regions from SNP 47479 to 48079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,654 DEBUG Processing 155/644 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,688 DEBUG Processing 55/586 atomic regions from SNP 16219 to 16819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:09,711 DEBUG Processing 165/705 atomic regions from SNP 49247 to 49847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,744 DEBUG Processing 611/710 atomic regions from SNP 183250 to 183850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:09,862 DEBUG Processing 156/644 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:09,880 DEBUG Processing 160/667 atomic regions from SNP 47779 to 48379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:09,925 DEBUG Processing 56/586 atomic regions from SNP 16519 to 17119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:09,955 DEBUG Processing 166/705 atomic regions from SNP 49547 to 50147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:09,987 DEBUG Processing 612/710 atomic regions from SNP 183550 to 184150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,066 DEBUG Processing 157/644 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,109 DEBUG Processing 161/667 atomic regions from SNP 48079 to 48679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,153 DEBUG Processing 57/586 atomic regions from SNP 16819 to 17419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:10,183 DEBUG Processing 167/705 atomic regions from SNP 49847 to 50447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,231 DEBUG Processing 613/710 atomic regions from SNP 183850 to 184450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,266 DEBUG Processing 158/644 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,339 DEBUG Processing 162/667 atomic regions from SNP 48379 to 48979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,387 DEBUG Processing 58/586 atomic regions from SNP 17119 to 17719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:10,415 DEBUG Processing 168/705 atomic regions from SNP 50147 to 50747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,469 DEBUG Processing 159/644 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,488 DEBUG Processing 614/710 atomic regions from SNP 184150 to 184750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,565 DEBUG Processing 163/667 atomic regions from SNP 48679 to 49279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,614 DEBUG Processing 59/586 atomic regions from SNP 17419 to 18019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:10,652 DEBUG Processing 169/705 atomic regions from SNP 50447 to 51047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,669 DEBUG Processing 160/644 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,729 DEBUG Processing 615/710 atomic regions from SNP 184450 to 185050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:10,782 DEBUG Processing 164/667 atomic regions from SNP 48979 to 49579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:10,824 DEBUG Processing 60/586 atomic regions from SNP 17719 to 18319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:10,873 DEBUG Processing 161/644 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:10,884 DEBUG Processing 170/705 atomic regions from SNP 50747 to 51347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:10,973 DEBUG Processing 616/710 atomic regions from SNP 184750 to 185350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,003 DEBUG Processing 165/667 atomic regions from SNP 49279 to 49879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,034 DEBUG Processing 61/586 atomic regions from SNP 18019 to 18619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:11,070 DEBUG Processing 162/644 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,113 DEBUG Processing 171/705 atomic regions from SNP 51047 to 51647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,218 DEBUG Processing 617/710 atomic regions from SNP 185050 to 185650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,223 DEBUG Processing 166/667 atomic regions from SNP 49579 to 50179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,239 DEBUG Processing 62/586 atomic regions from SNP 18319 to 18919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:11,270 DEBUG Processing 163/644 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,344 DEBUG Processing 172/705 atomic regions from SNP 51347 to 51947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,430 DEBUG Processing 63/586 atomic regions from SNP 18619 to 19219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:11,441 DEBUG Processing 167/667 atomic regions from SNP 49879 to 50479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,460 DEBUG Processing 618/710 atomic regions from SNP 185350 to 185950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,468 DEBUG Processing 164/644 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,573 DEBUG Processing 173/705 atomic regions from SNP 51647 to 52247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,622 DEBUG Processing 64/586 atomic regions from SNP 18919 to 19519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:11,661 DEBUG Processing 168/667 atomic regions from SNP 50179 to 50779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,666 DEBUG Processing 165/644 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,692 DEBUG Processing 619/710 atomic regions from SNP 185650 to 186250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:11,800 DEBUG Processing 174/705 atomic regions from SNP 51947 to 52547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:11,815 DEBUG Processing 65/586 atomic regions from SNP 19219 to 19819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:11,866 DEBUG Processing 166/644 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:11,887 DEBUG Processing 169/667 atomic regions from SNP 50479 to 51079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:11,932 DEBUG Processing 620/710 atomic regions from SNP 185950 to 186550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,009 DEBUG Processing 66/586 atomic regions from SNP 19519 to 20119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:12,023 DEBUG Processing 175/705 atomic regions from SNP 52247 to 52847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,064 DEBUG Processing 167/644 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,111 DEBUG Processing 170/667 atomic regions from SNP 50779 to 51379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,152 DEBUG Processing 621/710 atomic regions from SNP 186250 to 186850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,206 DEBUG Processing 67/586 atomic regions from SNP 19819 to 20419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:12,253 DEBUG Processing 176/705 atomic regions from SNP 52547 to 53147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,265 DEBUG Processing 168/644 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,332 DEBUG Processing 171/667 atomic regions from SNP 51079 to 51679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,371 DEBUG Processing 622/710 atomic regions from SNP 186550 to 187150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,397 DEBUG Processing 68/586 atomic regions from SNP 20119 to 20719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:12,462 DEBUG Processing 169/644 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,480 DEBUG Processing 177/705 atomic regions from SNP 52847 to 53447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,564 DEBUG Processing 172/667 atomic regions from SNP 51379 to 51979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,589 DEBUG Processing 69/586 atomic regions from SNP 20419 to 21019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:12,593 DEBUG Processing 623/710 atomic regions from SNP 186850 to 187450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,655 DEBUG Processing 170/644 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,704 DEBUG Processing 178/705 atomic regions from SNP 53147 to 53747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,789 DEBUG Processing 70/586 atomic regions from SNP 20719 to 21319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:12,807 DEBUG Processing 173/667 atomic regions from SNP 51679 to 52279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:12,822 DEBUG Processing 624/710 atomic regions from SNP 187150 to 187750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:12,857 DEBUG Processing 171/644 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:12,927 DEBUG Processing 179/705 atomic regions from SNP 53447 to 54047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:12,990 DEBUG Processing 71/586 atomic regions from SNP 21019 to 21619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:13,046 DEBUG Processing 174/667 atomic regions from SNP 51979 to 52579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,054 DEBUG Processing 625/710 atomic regions from SNP 187450 to 188050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,064 DEBUG Processing 172/644 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,155 DEBUG Processing 180/705 atomic regions from SNP 53747 to 54347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,183 DEBUG Processing 72/586 atomic regions from SNP 21319 to 21919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:13,270 DEBUG Processing 173/644 atomic regions from SNP 51772 to 52372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,271 DEBUG Processing 175/667 atomic regions from SNP 52279 to 52879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,281 DEBUG Processing 626/710 atomic regions from SNP 187750 to 188350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,371 DEBUG Processing 73/586 atomic regions from SNP 21619 to 22219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:13,384 DEBUG Processing 181/705 atomic regions from SNP 54047 to 54647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,473 DEBUG Processing 174/644 atomic regions from SNP 52072 to 52672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,498 DEBUG Processing 176/667 atomic regions from SNP 52579 to 53179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,508 DEBUG Processing 627/710 atomic regions from SNP 188050 to 188650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,563 DEBUG Processing 74/586 atomic regions from SNP 21919 to 22519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:13,613 DEBUG Processing 182/705 atomic regions from SNP 54347 to 54947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,669 DEBUG Processing 175/644 atomic regions from SNP 52372 to 52972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,727 DEBUG Processing 177/667 atomic regions from SNP 52879 to 53479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,741 DEBUG Processing 628/710 atomic regions from SNP 188350 to 188950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,762 DEBUG Processing 75/586 atomic regions from SNP 22219 to 22819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:13,845 DEBUG Processing 183/705 atomic regions from SNP 54647 to 55247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:13,868 DEBUG Processing 176/644 atomic regions from SNP 52672 to 53272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:13,950 DEBUG Processing 178/667 atomic regions from SNP 53179 to 53779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:13,955 DEBUG Processing 76/586 atomic regions from SNP 22519 to 23119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:13,982 DEBUG Processing 629/710 atomic regions from SNP 188650 to 189250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,067 DEBUG Processing 177/644 atomic regions from SNP 52972 to 53572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,080 DEBUG Processing 184/705 atomic regions from SNP 54947 to 55547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,145 DEBUG Processing 77/586 atomic regions from SNP 22819 to 23419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:14,168 DEBUG Processing 179/667 atomic regions from SNP 53479 to 54079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,213 DEBUG Processing 630/710 atomic regions from SNP 188950 to 189550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,267 DEBUG Processing 178/644 atomic regions from SNP 53272 to 53872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,314 DEBUG Processing 185/705 atomic regions from SNP 55247 to 55847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,336 DEBUG Processing 78/586 atomic regions from SNP 23119 to 23719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:14,387 DEBUG Processing 180/667 atomic regions from SNP 53779 to 54379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,433 DEBUG Processing 631/710 atomic regions from SNP 189250 to 189850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,468 DEBUG Processing 179/644 atomic regions from SNP 53572 to 54172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,529 DEBUG Processing 79/586 atomic regions from SNP 23419 to 24019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:14,550 DEBUG Processing 186/705 atomic regions from SNP 55547 to 56147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,609 DEBUG Processing 181/667 atomic regions from SNP 54079 to 54679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,647 DEBUG Processing 632/710 atomic regions from SNP 189550 to 190150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,665 DEBUG Processing 180/644 atomic regions from SNP 53872 to 54472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,724 DEBUG Processing 80/586 atomic regions from SNP 23719 to 24319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:14,779 DEBUG Processing 187/705 atomic regions from SNP 55847 to 56447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:14,836 DEBUG Processing 182/667 atomic regions from SNP 54379 to 54979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:14,864 DEBUG Processing 181/644 atomic regions from SNP 54172 to 54772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:14,869 DEBUG Processing 633/710 atomic regions from SNP 189850 to 190450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,913 DEBUG Processing 81/586 atomic regions from SNP 24019 to 24619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:15,002 DEBUG Processing 188/705 atomic regions from SNP 56147 to 56747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,064 DEBUG Processing 182/644 atomic regions from SNP 54472 to 55072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,079 DEBUG Processing 183/667 atomic regions from SNP 54679 to 55279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,091 DEBUG Processing 634/710 atomic regions from SNP 190150 to 190750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,106 DEBUG Processing 82/586 atomic regions from SNP 24319 to 24919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:15,221 DEBUG Processing 189/705 atomic regions from SNP 56447 to 57047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,262 DEBUG Processing 183/644 atomic regions from SNP 54772 to 55372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,302 DEBUG Processing 83/586 atomic regions from SNP 24619 to 25219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:15,302 DEBUG Processing 184/667 atomic regions from SNP 54979 to 55579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,318 DEBUG Processing 635/710 atomic regions from SNP 190450 to 191050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,448 DEBUG Processing 190/705 atomic regions from SNP 56747 to 57347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,460 DEBUG Processing 184/644 atomic regions from SNP 55072 to 55672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,497 DEBUG Processing 84/586 atomic regions from SNP 24919 to 25519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:15,518 DEBUG Processing 185/667 atomic regions from SNP 55279 to 55879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,540 DEBUG Processing 636/710 atomic regions from SNP 190750 to 191350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,662 DEBUG Processing 185/644 atomic regions from SNP 55372 to 55972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,683 DEBUG Processing 191/705 atomic regions from SNP 57047 to 57647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,694 DEBUG Processing 85/586 atomic regions from SNP 25219 to 25819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:15,733 DEBUG Processing 186/667 atomic regions from SNP 55579 to 56179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,763 DEBUG Processing 637/710 atomic regions from SNP 191050 to 191650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,858 DEBUG Processing 186/644 atomic regions from SNP 55672 to 56272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:15,890 DEBUG Processing 86/586 atomic regions from SNP 25519 to 26119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:15,913 DEBUG Processing 192/705 atomic regions from SNP 57347 to 57947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:15,958 DEBUG Processing 187/667 atomic regions from SNP 55879 to 56479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:15,991 DEBUG Processing 638/710 atomic regions from SNP 191350 to 191950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,057 DEBUG Processing 187/644 atomic regions from SNP 55972 to 56572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,084 DEBUG Processing 87/586 atomic regions from SNP 25819 to 26419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:16,140 DEBUG Processing 193/705 atomic regions from SNP 57647 to 58247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,179 DEBUG Processing 188/667 atomic regions from SNP 56179 to 56779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,218 DEBUG Processing 639/710 atomic regions from SNP 191650 to 192250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,260 DEBUG Processing 188/644 atomic regions from SNP 56272 to 56872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,281 DEBUG Processing 88/586 atomic regions from SNP 26119 to 26719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:16,375 DEBUG Processing 194/705 atomic regions from SNP 57947 to 58547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,404 DEBUG Processing 189/667 atomic regions from SNP 56479 to 57079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,444 DEBUG Processing 640/710 atomic regions from SNP 191950 to 192550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,467 DEBUG Processing 189/644 atomic regions from SNP 56572 to 57172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,480 DEBUG Processing 89/586 atomic regions from SNP 26419 to 27019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:16,609 DEBUG Processing 195/705 atomic regions from SNP 58247 to 58847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,629 DEBUG Processing 190/667 atomic regions from SNP 56779 to 57379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,673 DEBUG Processing 641/710 atomic regions from SNP 192250 to 192850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,682 DEBUG Processing 190/644 atomic regions from SNP 56872 to 57472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,684 DEBUG Processing 90/586 atomic regions from SNP 26719 to 27319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:16,834 DEBUG Processing 196/705 atomic regions from SNP 58547 to 59147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:16,842 DEBUG Processing 191/667 atomic regions from SNP 57079 to 57679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:16,886 DEBUG Processing 91/586 atomic regions from SNP 27019 to 27619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:16,887 DEBUG Processing 191/644 atomic regions from SNP 57172 to 57772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:16,901 DEBUG Processing 642/710 atomic regions from SNP 192550 to 193150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,065 DEBUG Processing 197/705 atomic regions from SNP 58847 to 59447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,066 DEBUG Processing 192/667 atomic regions from SNP 57379 to 57979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,087 DEBUG Processing 92/586 atomic regions from SNP 27319 to 27919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:17,093 DEBUG Processing 192/644 atomic regions from SNP 57472 to 58072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,129 DEBUG Processing 643/710 atomic regions from SNP 192850 to 193450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,289 DEBUG Processing 93/586 atomic regions from SNP 27619 to 28219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:17,297 DEBUG Processing 193/667 atomic regions from SNP 57679 to 58279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,301 DEBUG Processing 193/644 atomic regions from SNP 57772 to 58372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,306 DEBUG Processing 198/705 atomic regions from SNP 59147 to 59747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,364 DEBUG Processing 644/710 atomic regions from SNP 193150 to 193750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,486 DEBUG Processing 94/586 atomic regions from SNP 27919 to 28519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:17,504 DEBUG Processing 194/644 atomic regions from SNP 58072 to 58672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,518 DEBUG Processing 194/667 atomic regions from SNP 57979 to 58579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,535 DEBUG Processing 199/705 atomic regions from SNP 59447 to 60047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,586 DEBUG Processing 645/710 atomic regions from SNP 193450 to 194050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,683 DEBUG Processing 95/586 atomic regions from SNP 28219 to 28819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:17,704 DEBUG Processing 195/644 atomic regions from SNP 58372 to 58972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,757 DEBUG Processing 195/667 atomic regions from SNP 58279 to 58879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:17,760 DEBUG Processing 200/705 atomic regions from SNP 59747 to 60347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:17,800 DEBUG Processing 646/710 atomic regions from SNP 193750 to 194350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,880 DEBUG Processing 96/586 atomic regions from SNP 28519 to 29119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:17,905 DEBUG Processing 196/644 atomic regions from SNP 58672 to 59272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:17,997 DEBUG Processing 201/705 atomic regions from SNP 60047 to 60647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,015 DEBUG Processing 196/667 atomic regions from SNP 58579 to 59179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,020 DEBUG Processing 647/710 atomic regions from SNP 194050 to 194650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,080 DEBUG Processing 97/586 atomic regions from SNP 28819 to 29419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:18,109 DEBUG Processing 197/644 atomic regions from SNP 58972 to 59572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,229 DEBUG Processing 202/705 atomic regions from SNP 60347 to 60947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,246 DEBUG Processing 197/667 atomic regions from SNP 58879 to 59479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,251 DEBUG Processing 648/710 atomic regions from SNP 194350 to 194950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,292 DEBUG Processing 98/586 atomic regions from SNP 29119 to 29719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:18,329 DEBUG Processing 198/644 atomic regions from SNP 59272 to 59872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,447 DEBUG Processing 203/705 atomic regions from SNP 60647 to 61247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,457 DEBUG Processing 198/667 atomic regions from SNP 59179 to 59779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,474 DEBUG Processing 649/710 atomic regions from SNP 194650 to 195250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,491 DEBUG Processing 99/586 atomic regions from SNP 29419 to 30019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:18,535 DEBUG Processing 199/644 atomic regions from SNP 59572 to 60172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,671 DEBUG Processing 204/705 atomic regions from SNP 60947 to 61547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,673 DEBUG Processing 199/667 atomic regions from SNP 59479 to 60079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,688 DEBUG Processing 100/586 atomic regions from SNP 29719 to 30319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:18,701 DEBUG Processing 650/710 atomic regions from SNP 194950 to 195550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,736 DEBUG Processing 200/644 atomic regions from SNP 59872 to 60472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:18,891 DEBUG Processing 101/586 atomic regions from SNP 30019 to 30619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:18,904 DEBUG Processing 205/705 atomic regions from SNP 61247 to 61847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:18,922 DEBUG Processing 200/667 atomic regions from SNP 59779 to 60379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:18,928 DEBUG Processing 651/710 atomic regions from SNP 195250 to 195850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,935 DEBUG Processing 201/644 atomic regions from SNP 60172 to 60772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,098 DEBUG Processing 102/586 atomic regions from SNP 30319 to 30919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:19,134 DEBUG Processing 206/705 atomic regions from SNP 61547 to 62147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,141 DEBUG Processing 202/644 atomic regions from SNP 60472 to 61072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,154 DEBUG Processing 201/667 atomic regions from SNP 60079 to 60679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,160 DEBUG Processing 652/710 atomic regions from SNP 195550 to 196150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,304 DEBUG Processing 103/586 atomic regions from SNP 30619 to 31219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:19,349 DEBUG Processing 203/644 atomic regions from SNP 60772 to 61372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,367 DEBUG Processing 207/705 atomic regions from SNP 61847 to 62447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,375 DEBUG Processing 202/667 atomic regions from SNP 60379 to 60979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,389 DEBUG Processing 653/710 atomic regions from SNP 195850 to 196450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,500 DEBUG Processing 104/586 atomic regions from SNP 30919 to 31519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:19,556 DEBUG Processing 204/644 atomic regions from SNP 61072 to 61672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,600 DEBUG Processing 203/667 atomic regions from SNP 60679 to 61279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,603 DEBUG Processing 208/705 atomic regions from SNP 62147 to 62747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,612 DEBUG Processing 654/710 atomic regions from SNP 196150 to 196750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,687 DEBUG Processing 105/586 atomic regions from SNP 31219 to 31819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:19,760 DEBUG Processing 205/644 atomic regions from SNP 61372 to 61972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:19,829 DEBUG Processing 204/667 atomic regions from SNP 60979 to 61579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:19,837 DEBUG Processing 655/710 atomic regions from SNP 196450 to 197050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,837 DEBUG Processing 209/705 atomic regions from SNP 62447 to 63047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:19,878 DEBUG Processing 106/586 atomic regions from SNP 31519 to 32119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:19,956 DEBUG Processing 206/644 atomic regions from SNP 61672 to 62272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,052 DEBUG Processing 205/667 atomic regions from SNP 61279 to 61879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,063 DEBUG Processing 656/710 atomic regions from SNP 196750 to 197350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,070 DEBUG Processing 210/705 atomic regions from SNP 62747 to 63347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,071 DEBUG Processing 107/586 atomic regions from SNP 31819 to 32419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:20,149 DEBUG Processing 207/644 atomic regions from SNP 61972 to 62572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,268 DEBUG Processing 108/586 atomic regions from SNP 32119 to 32719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:20,275 DEBUG Processing 206/667 atomic regions from SNP 61579 to 62179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,287 DEBUG Processing 657/710 atomic regions from SNP 197050 to 197650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,301 DEBUG Processing 211/705 atomic regions from SNP 63047 to 63647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,348 DEBUG Processing 208/644 atomic regions from SNP 62272 to 62872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,463 DEBUG Processing 109/586 atomic regions from SNP 32419 to 33019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:20,497 DEBUG Processing 207/667 atomic regions from SNP 61879 to 62479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,508 DEBUG Processing 658/710 atomic regions from SNP 197350 to 197950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,527 DEBUG Processing 212/705 atomic regions from SNP 63347 to 63947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,549 DEBUG Processing 209/644 atomic regions from SNP 62572 to 63172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,654 DEBUG Processing 110/586 atomic regions from SNP 32719 to 33319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:20,726 DEBUG Processing 208/667 atomic regions from SNP 62179 to 62779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,733 DEBUG Processing 659/710 atomic regions from SNP 197650 to 198250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,751 DEBUG Processing 210/644 atomic regions from SNP 62872 to 63472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,759 DEBUG Processing 213/705 atomic regions from SNP 63647 to 64247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:20,844 DEBUG Processing 111/586 atomic regions from SNP 33019 to 33619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:20,953 DEBUG Processing 209/667 atomic regions from SNP 62479 to 63079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:20,954 DEBUG Processing 211/644 atomic regions from SNP 63172 to 63772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:20,957 DEBUG Processing 660/710 atomic regions from SNP 197950 to 198550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,988 DEBUG Processing 214/705 atomic regions from SNP 63947 to 64547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,035 DEBUG Processing 112/586 atomic regions from SNP 33319 to 33919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:21,150 DEBUG Processing 212/644 atomic regions from SNP 63472 to 64072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,175 DEBUG Processing 210/667 atomic regions from SNP 62779 to 63379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,176 DEBUG Processing 661/710 atomic regions from SNP 198250 to 198850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,221 DEBUG Processing 215/705 atomic regions from SNP 64247 to 64847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,231 DEBUG Processing 113/586 atomic regions from SNP 33619 to 34219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:21,345 DEBUG Processing 213/644 atomic regions from SNP 63772 to 64372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,395 DEBUG Processing 662/710 atomic regions from SNP 198550 to 199150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,398 DEBUG Processing 211/667 atomic regions from SNP 63079 to 63679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,427 DEBUG Processing 114/586 atomic regions from SNP 33919 to 34519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:21,453 DEBUG Processing 216/705 atomic regions from SNP 64547 to 65147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,540 DEBUG Processing 214/644 atomic regions from SNP 64072 to 64672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,611 DEBUG Processing 663/710 atomic regions from SNP 198850 to 199450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,619 DEBUG Processing 115/586 atomic regions from SNP 34219 to 34819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:21,619 DEBUG Processing 212/667 atomic regions from SNP 63379 to 63979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,682 DEBUG Processing 217/705 atomic regions from SNP 64847 to 65447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,738 DEBUG Processing 215/644 atomic regions from SNP 64372 to 64972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:21,810 DEBUG Processing 116/586 atomic regions from SNP 34519 to 35119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:21,829 DEBUG Processing 664/710 atomic regions from SNP 199150 to 199750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,842 DEBUG Processing 213/667 atomic regions from SNP 63679 to 64279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:21,909 DEBUG Processing 218/705 atomic regions from SNP 65147 to 65747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:21,936 DEBUG Processing 216/644 atomic regions from SNP 64672 to 65272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,009 DEBUG Processing 117/586 atomic regions from SNP 34819 to 35419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:22,055 DEBUG Processing 665/710 atomic regions from SNP 199450 to 200050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,073 DEBUG Processing 214/667 atomic regions from SNP 63979 to 64579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,133 DEBUG Processing 217/644 atomic regions from SNP 64972 to 65572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,140 DEBUG Processing 219/705 atomic regions from SNP 65447 to 66047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,207 DEBUG Processing 118/586 atomic regions from SNP 35119 to 35719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:22,279 DEBUG Processing 666/710 atomic regions from SNP 199750 to 200350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,303 DEBUG Processing 215/667 atomic regions from SNP 64279 to 64879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,336 DEBUG Processing 218/644 atomic regions from SNP 65272 to 65872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,372 DEBUG Processing 220/705 atomic regions from SNP 65747 to 66347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,405 DEBUG Processing 119/586 atomic regions from SNP 35419 to 36019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:22,502 DEBUG Processing 667/710 atomic regions from SNP 200050 to 200650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,531 DEBUG Processing 216/667 atomic regions from SNP 64579 to 65179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,540 DEBUG Processing 219/644 atomic regions from SNP 65572 to 66172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,600 DEBUG Processing 120/586 atomic regions from SNP 35719 to 36319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:22,610 DEBUG Processing 221/705 atomic regions from SNP 66047 to 66647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,720 DEBUG Processing 668/710 atomic regions from SNP 200350 to 200950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,736 DEBUG Processing 220/644 atomic regions from SNP 65872 to 66472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,744 DEBUG Processing 217/667 atomic regions from SNP 64879 to 65479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,794 DEBUG Processing 121/586 atomic regions from SNP 36019 to 36619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:22,849 DEBUG Processing 222/705 atomic regions from SNP 66347 to 66947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:22,931 DEBUG Processing 221/644 atomic regions from SNP 66172 to 66772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:22,938 DEBUG Processing 669/710 atomic regions from SNP 200650 to 201250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,953 DEBUG Processing 218/667 atomic regions from SNP 65179 to 65779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:22,987 DEBUG Processing 122/586 atomic regions from SNP 36319 to 36919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:23,081 DEBUG Processing 223/705 atomic regions from SNP 66647 to 67247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,134 DEBUG Processing 222/644 atomic regions from SNP 66472 to 67072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,163 DEBUG Processing 670/710 atomic regions from SNP 200950 to 201550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,178 DEBUG Processing 219/667 atomic regions from SNP 65479 to 66079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,186 DEBUG Processing 123/586 atomic regions from SNP 36619 to 37219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:23,306 DEBUG Processing 224/705 atomic regions from SNP 66947 to 67547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,336 DEBUG Processing 223/644 atomic regions from SNP 66772 to 67372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,389 DEBUG Processing 124/586 atomic regions from SNP 36919 to 37519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:23,392 DEBUG Processing 671/710 atomic regions from SNP 201250 to 201850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,407 DEBUG Processing 220/667 atomic regions from SNP 65779 to 66379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,530 DEBUG Processing 225/705 atomic regions from SNP 67247 to 67847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,535 DEBUG Processing 224/644 atomic regions from SNP 67072 to 67672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,590 DEBUG Processing 125/586 atomic regions from SNP 37219 to 37819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:23,619 DEBUG Processing 672/710 atomic regions from SNP 201550 to 202150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,636 DEBUG Processing 221/667 atomic regions from SNP 66079 to 66679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,729 DEBUG Processing 225/644 atomic regions from SNP 67372 to 67972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,756 DEBUG Processing 226/705 atomic regions from SNP 67547 to 68147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:23,786 DEBUG Processing 126/586 atomic regions from SNP 37519 to 38119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:23,842 DEBUG Processing 673/710 atomic regions from SNP 201850 to 202450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,862 DEBUG Processing 222/667 atomic regions from SNP 66379 to 66979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:23,924 DEBUG Processing 226/644 atomic regions from SNP 67672 to 68272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:23,980 DEBUG Processing 127/586 atomic regions from SNP 37819 to 38419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:23,984 DEBUG Processing 227/705 atomic regions from SNP 67847 to 68447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,062 DEBUG Processing 674/710 atomic regions from SNP 202150 to 202750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,089 DEBUG Processing 223/667 atomic regions from SNP 66679 to 67279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,124 DEBUG Processing 227/644 atomic regions from SNP 67972 to 68572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,174 DEBUG Processing 128/586 atomic regions from SNP 38119 to 38719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:24,214 DEBUG Processing 228/705 atomic regions from SNP 68147 to 68747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,275 DEBUG Processing 675/710 atomic regions from SNP 202450 to 203050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,312 DEBUG Processing 224/667 atomic regions from SNP 66979 to 67579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,326 DEBUG Processing 228/644 atomic regions from SNP 68272 to 68872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,372 DEBUG Processing 129/586 atomic regions from SNP 38419 to 39019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:24,445 DEBUG Processing 229/705 atomic regions from SNP 68447 to 69047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,493 DEBUG Processing 676/710 atomic regions from SNP 202750 to 203350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,530 DEBUG Processing 229/644 atomic regions from SNP 68572 to 69172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,532 DEBUG Processing 225/667 atomic regions from SNP 67279 to 67879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,577 DEBUG Processing 130/586 atomic regions from SNP 38719 to 39319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:24,682 DEBUG Processing 230/705 atomic regions from SNP 68747 to 69347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,716 DEBUG Processing 677/710 atomic regions from SNP 203050 to 203650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,735 DEBUG Processing 230/644 atomic regions from SNP 68872 to 69472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,761 DEBUG Processing 226/667 atomic regions from SNP 67579 to 68179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:24,779 DEBUG Processing 131/586 atomic regions from SNP 39019 to 39619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:24,909 DEBUG Processing 231/705 atomic regions from SNP 69047 to 69647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:24,938 DEBUG Processing 231/644 atomic regions from SNP 69172 to 69772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:24,940 DEBUG Processing 678/710 atomic regions from SNP 203350 to 203950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,982 DEBUG Processing 132/586 atomic regions from SNP 39319 to 39919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:24,996 DEBUG Processing 227/667 atomic regions from SNP 67879 to 68479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,138 DEBUG Processing 232/705 atomic regions from SNP 69347 to 69947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,141 DEBUG Processing 232/644 atomic regions from SNP 69472 to 70072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,166 DEBUG Processing 679/710 atomic regions from SNP 203650 to 204250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,181 DEBUG Processing 133/586 atomic regions from SNP 39619 to 40219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:25,228 DEBUG Processing 228/667 atomic regions from SNP 68179 to 68779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,345 DEBUG Processing 233/644 atomic regions from SNP 69772 to 70372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,370 DEBUG Processing 233/705 atomic regions from SNP 69647 to 70247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,379 DEBUG Processing 134/586 atomic regions from SNP 39919 to 40519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:25,391 DEBUG Processing 680/710 atomic regions from SNP 203950 to 204550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,455 DEBUG Processing 229/667 atomic regions from SNP 68479 to 69079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,552 DEBUG Processing 234/644 atomic regions from SNP 70072 to 70672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,579 DEBUG Processing 135/586 atomic regions from SNP 40219 to 40819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:25,602 DEBUG Processing 234/705 atomic regions from SNP 69947 to 70547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,631 DEBUG Processing 681/710 atomic regions from SNP 204250 to 204850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,702 DEBUG Processing 230/667 atomic regions from SNP 68779 to 69379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,757 DEBUG Processing 235/644 atomic regions from SNP 70372 to 70972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,777 DEBUG Processing 136/586 atomic regions from SNP 40519 to 41119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:25,836 DEBUG Processing 235/705 atomic regions from SNP 70247 to 70847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:25,870 DEBUG Processing 682/710 atomic regions from SNP 204550 to 205150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,926 DEBUG Processing 231/667 atomic regions from SNP 69079 to 69679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:25,959 DEBUG Processing 236/644 atomic regions from SNP 70672 to 71272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:25,974 DEBUG Processing 137/586 atomic regions from SNP 40819 to 41419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:26,082 DEBUG Processing 236/705 atomic regions from SNP 70547 to 71147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,102 DEBUG Processing 683/710 atomic regions from SNP 204850 to 205450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,146 DEBUG Processing 232/667 atomic regions from SNP 69379 to 69979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,162 DEBUG Processing 237/644 atomic regions from SNP 70972 to 71572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,172 DEBUG Processing 138/586 atomic regions from SNP 41119 to 41719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:26,334 DEBUG Processing 237/705 atomic regions from SNP 70847 to 71447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,340 DEBUG Processing 684/710 atomic regions from SNP 205150 to 205750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,375 DEBUG Processing 238/644 atomic regions from SNP 71272 to 71872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,378 DEBUG Processing 139/586 atomic regions from SNP 41419 to 42019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:26,381 DEBUG Processing 233/667 atomic regions from SNP 69679 to 70279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,583 DEBUG Processing 238/705 atomic regions from SNP 71147 to 71747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,583 DEBUG Processing 685/710 atomic regions from SNP 205450 to 206050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,589 DEBUG Processing 140/586 atomic regions from SNP 41719 to 42319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:26,592 DEBUG Processing 239/644 atomic regions from SNP 71572 to 72172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,624 DEBUG Processing 234/667 atomic regions from SNP 69979 to 70579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:26,798 DEBUG Processing 141/586 atomic regions from SNP 42019 to 42619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:26,806 DEBUG Processing 240/644 atomic regions from SNP 71872 to 72472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:26,820 DEBUG Processing 239/705 atomic regions from SNP 71447 to 72047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:26,838 DEBUG Processing 686/710 atomic regions from SNP 205750 to 206350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,859 DEBUG Processing 235/667 atomic regions from SNP 70279 to 70879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,004 DEBUG Processing 142/586 atomic regions from SNP 42319 to 42919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:27,018 DEBUG Processing 241/644 atomic regions from SNP 72172 to 72772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,055 DEBUG Processing 240/705 atomic regions from SNP 71747 to 72347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,091 DEBUG Processing 687/710 atomic regions from SNP 206050 to 206650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,091 DEBUG Processing 236/667 atomic regions from SNP 70579 to 71179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,127 DEBUG Segmenting atomic regions: 2025-01-31 09:50:27,198 DEBUG Processing 1/548 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:27,203 DEBUG Processing 143/586 atomic regions from SNP 42619 to 43219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:27,225 DEBUG Processing 242/644 atomic regions from SNP 72472 to 73072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,291 DEBUG Processing 241/705 atomic regions from SNP 72047 to 72647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,324 DEBUG Processing 688/710 atomic regions from SNP 206350 to 206950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,331 DEBUG Processing 237/667 atomic regions from SNP 70879 to 71479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,402 DEBUG Processing 144/586 atomic regions from SNP 42919 to 43519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:27,416 DEBUG Processing 2/548 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:27,431 DEBUG Processing 243/644 atomic regions from SNP 72772 to 73372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,537 DEBUG Processing 242/705 atomic regions from SNP 72347 to 72947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,579 DEBUG Processing 689/710 atomic regions from SNP 206650 to 207250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,592 DEBUG Processing 238/667 atomic regions from SNP 71179 to 71779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,607 DEBUG Processing 145/586 atomic regions from SNP 43219 to 43819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:27,631 DEBUG Processing 3/548 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:27,639 DEBUG Processing 244/644 atomic regions from SNP 73072 to 73672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,775 DEBUG Processing 243/705 atomic regions from SNP 72647 to 73247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:27,817 DEBUG Processing 146/586 atomic regions from SNP 43519 to 44119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:27,821 DEBUG Processing 690/710 atomic regions from SNP 206950 to 207550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,830 DEBUG Processing 239/667 atomic regions from SNP 71479 to 72079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:27,850 DEBUG Processing 245/644 atomic regions from SNP 73372 to 73972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:27,868 DEBUG Processing 4/548 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:28,019 DEBUG Processing 244/705 atomic regions from SNP 72947 to 73547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,025 DEBUG Processing 147/586 atomic regions from SNP 43819 to 44419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:28,057 DEBUG Processing 691/710 atomic regions from SNP 207250 to 207850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,062 DEBUG Processing 246/644 atomic regions from SNP 73672 to 74272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,066 DEBUG Processing 240/667 atomic regions from SNP 71779 to 72379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,091 DEBUG Processing 5/548 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:28,228 DEBUG Processing 148/586 atomic regions from SNP 44119 to 44719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:28,260 DEBUG Processing 245/705 atomic regions from SNP 73247 to 73847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,277 DEBUG Processing 247/644 atomic regions from SNP 73972 to 74572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,295 DEBUG Processing 692/710 atomic regions from SNP 207550 to 208150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,299 DEBUG Processing 241/667 atomic regions from SNP 72079 to 72679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,310 DEBUG Processing 6/548 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:28,431 DEBUG Processing 149/586 atomic regions from SNP 44419 to 45019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:28,498 DEBUG Processing 248/644 atomic regions from SNP 74272 to 74872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,513 DEBUG Processing 246/705 atomic regions from SNP 73547 to 74147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,536 DEBUG Processing 7/548 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:28,538 DEBUG Processing 693/710 atomic regions from SNP 207850 to 208450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,540 DEBUG Processing 242/667 atomic regions from SNP 72379 to 72979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,623 DEBUG Processing 150/586 atomic regions from SNP 44719 to 45319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:28,708 DEBUG Processing 249/644 atomic regions from SNP 74572 to 75172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:28,768 DEBUG Processing 247/705 atomic regions from SNP 73847 to 74447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:28,781 DEBUG Processing 243/667 atomic regions from SNP 72679 to 73279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:28,791 DEBUG Processing 694/710 atomic regions from SNP 208150 to 208750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,792 DEBUG Processing 8/548 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:28,823 DEBUG Processing 151/586 atomic regions from SNP 45019 to 45619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:28,908 DEBUG Processing 250/644 atomic regions from SNP 74872 to 75472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,017 DEBUG Processing 248/705 atomic regions from SNP 74147 to 74747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,027 DEBUG Processing 244/667 atomic regions from SNP 72979 to 73579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,032 DEBUG Processing 695/710 atomic regions from SNP 208450 to 209050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,034 DEBUG Processing 152/586 atomic regions from SNP 45319 to 45919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:29,037 DEBUG Processing 9/548 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,112 DEBUG Processing 251/644 atomic regions from SNP 75172 to 75772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,239 DEBUG Processing 153/586 atomic regions from SNP 45619 to 46219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:29,262 DEBUG Processing 249/705 atomic regions from SNP 74447 to 75047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,284 DEBUG Processing 696/710 atomic regions from SNP 208750 to 209350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,285 DEBUG Processing 245/667 atomic regions from SNP 73279 to 73879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,285 DEBUG Processing 10/548 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,326 DEBUG Processing 252/644 atomic regions from SNP 75472 to 76072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,436 DEBUG Processing 154/586 atomic regions from SNP 45919 to 46519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:29,508 DEBUG Processing 250/705 atomic regions from SNP 74747 to 75347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,517 DEBUG Processing 11/548 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,526 DEBUG Processing 697/710 atomic regions from SNP 209050 to 209650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,545 DEBUG Processing 253/644 atomic regions from SNP 75772 to 76372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,548 DEBUG Processing 246/667 atomic regions from SNP 73579 to 74179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,632 DEBUG Processing 155/586 atomic regions from SNP 46219 to 46819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:29,751 DEBUG Processing 251/705 atomic regions from SNP 75047 to 75647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:29,754 DEBUG Processing 254/644 atomic regions from SNP 76072 to 76672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,761 DEBUG Processing 698/710 atomic regions from SNP 209350 to 209950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,761 DEBUG Processing 12/548 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,786 DEBUG Processing 247/667 atomic regions from SNP 73879 to 74479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:29,829 DEBUG Processing 156/586 atomic regions from SNP 46519 to 47119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:29,955 DEBUG Processing 255/644 atomic regions from SNP 76372 to 76972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:29,975 DEBUG Processing 13/548 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:29,985 DEBUG Processing 699/710 atomic regions from SNP 209650 to 210250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,990 DEBUG Processing 252/705 atomic regions from SNP 75347 to 75947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,019 DEBUG Processing 248/667 atomic regions from SNP 74179 to 74779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,029 DEBUG Processing 157/586 atomic regions from SNP 46819 to 47419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:30,155 DEBUG Processing 256/644 atomic regions from SNP 76672 to 77272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,189 DEBUG Processing 14/548 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,211 DEBUG Processing 700/710 atomic regions from SNP 209950 to 210550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,227 DEBUG Processing 158/586 atomic regions from SNP 47119 to 47719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:30,232 DEBUG Processing 253/705 atomic regions from SNP 75647 to 76247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,252 DEBUG Processing 249/667 atomic regions from SNP 74479 to 75079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,379 DEBUG Processing 257/644 atomic regions from SNP 76972 to 77572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,404 DEBUG Processing 15/548 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,422 DEBUG Processing 159/586 atomic regions from SNP 47419 to 48019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:30,434 DEBUG Processing 701/710 atomic regions from SNP 210250 to 210850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,469 DEBUG Processing 254/705 atomic regions from SNP 75947 to 76547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,474 DEBUG Processing 250/667 atomic regions from SNP 74779 to 75379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,588 DEBUG Processing 258/644 atomic regions from SNP 77272 to 77872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,618 DEBUG Processing 16/548 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,621 DEBUG Processing 160/586 atomic regions from SNP 47719 to 48319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:30,658 DEBUG Processing 702/710 atomic regions from SNP 210550 to 211150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,704 DEBUG Processing 251/667 atomic regions from SNP 75079 to 75679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,707 DEBUG Processing 255/705 atomic regions from SNP 76247 to 76847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,789 DEBUG Processing 259/644 atomic regions from SNP 77572 to 78172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:30,819 DEBUG Processing 161/586 atomic regions from SNP 48019 to 48619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:30,830 DEBUG Processing 17/548 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:30,878 DEBUG Processing 703/710 atomic regions from SNP 210850 to 211450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,950 DEBUG Processing 252/667 atomic regions from SNP 75379 to 75979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:30,953 DEBUG Processing 256/705 atomic regions from SNP 76547 to 77147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:30,992 DEBUG Processing 260/644 atomic regions from SNP 77872 to 78472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,018 DEBUG Processing 162/586 atomic regions from SNP 48319 to 48919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:31,037 DEBUG Processing 18/548 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,096 DEBUG Processing 704/710 atomic regions from SNP 211150 to 211750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,196 DEBUG Processing 261/644 atomic regions from SNP 78172 to 78772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,202 DEBUG Processing 257/705 atomic regions from SNP 76847 to 77447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,214 DEBUG Processing 253/667 atomic regions from SNP 75679 to 76279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,222 DEBUG Processing 163/586 atomic regions from SNP 48619 to 49219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:31,246 DEBUG Processing 19/548 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,314 DEBUG Processing 705/710 atomic regions from SNP 211450 to 212050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,394 DEBUG Processing 262/644 atomic regions from SNP 78472 to 79072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,420 DEBUG Processing 164/586 atomic regions from SNP 48919 to 49519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:31,450 DEBUG Processing 258/705 atomic regions from SNP 77147 to 77747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,457 DEBUG Processing 254/667 atomic regions from SNP 75979 to 76579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,469 DEBUG Processing 20/548 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,534 DEBUG Processing 706/710 atomic regions from SNP 211750 to 212350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,582 DEBUG Processing 263/644 atomic regions from SNP 78772 to 79372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,605 DEBUG Processing 165/586 atomic regions from SNP 49219 to 49819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:31,688 DEBUG Processing 21/548 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,691 DEBUG Processing 259/705 atomic regions from SNP 77447 to 78047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,693 DEBUG Processing 255/667 atomic regions from SNP 76279 to 76879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,761 DEBUG Processing 707/710 atomic regions from SNP 212050 to 212650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,783 DEBUG Processing 264/644 atomic regions from SNP 79072 to 79672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:31,797 DEBUG Processing 166/586 atomic regions from SNP 49519 to 50119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:31,897 DEBUG Processing 22/548 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:31,921 DEBUG Processing 256/667 atomic regions from SNP 76579 to 77179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:31,952 DEBUG Processing 260/705 atomic regions from SNP 77747 to 78347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:31,991 DEBUG Processing 708/710 atomic regions from SNP 212350 to 212950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,992 DEBUG Processing 265/644 atomic regions from SNP 79372 to 79972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,000 DEBUG Processing 167/586 atomic regions from SNP 49819 to 50419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,101 DEBUG Processing 23/548 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,145 DEBUG Processing 257/667 atomic regions from SNP 76879 to 77479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,196 DEBUG Processing 266/644 atomic regions from SNP 79672 to 80272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,201 DEBUG Processing 168/586 atomic regions from SNP 50119 to 50719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,204 DEBUG Processing 261/705 atomic regions from SNP 78047 to 78647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,218 DEBUG Processing 709/710 atomic regions from SNP 212650 to 213250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,312 DEBUG Processing 24/548 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,369 DEBUG Processing 258/667 atomic regions from SNP 77179 to 77779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,398 DEBUG Processing 169/586 atomic regions from SNP 50419 to 51019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,401 DEBUG Processing 267/644 atomic regions from SNP 79972 to 80572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,440 DEBUG Processing 262/705 atomic regions from SNP 78347 to 78947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,444 DEBUG Processing 710/710 atomic regions from SNP 212950 to 213550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,524 DEBUG Processing 25/548 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,593 DEBUG Processing 259/667 atomic regions from SNP 77479 to 78079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,597 DEBUG Processing 170/586 atomic regions from SNP 50719 to 51319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,602 DEBUG Unique SNPs positions in subchromosome 1: 213551 2025-01-31 09:50:32,604 DEBUG Processing 268/644 atomic regions from SNP 80272 to 80872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,666 DEBUG Processing 263/705 atomic regions from SNP 78647 to 79247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,744 DEBUG Processing 26/548 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:32,803 DEBUG Processing 171/586 atomic regions from SNP 51019 to 51619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:32,813 DEBUG Processing 269/644 atomic regions from SNP 80572 to 81172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:32,826 DEBUG Processing 260/667 atomic regions from SNP 77779 to 78379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:32,888 DEBUG Processing 264/705 atomic regions from SNP 78947 to 79547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:32,951 DEBUG Processing 27/548 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,008 DEBUG Processing 172/586 atomic regions from SNP 51319 to 51919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,038 DEBUG Processing 270/644 atomic regions from SNP 80872 to 81472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,066 DEBUG Processing 261/667 atomic regions from SNP 78079 to 78679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,120 DEBUG Processing 265/705 atomic regions from SNP 79247 to 79847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,146 DEBUG Processing 28/548 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,206 DEBUG Processing 173/586 atomic regions from SNP 51619 to 52219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,253 DEBUG Processing 271/644 atomic regions from SNP 81172 to 81772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,309 DEBUG Processing 262/667 atomic regions from SNP 78379 to 78979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,352 DEBUG Processing 29/548 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,363 DEBUG Processing 266/705 atomic regions from SNP 79547 to 80147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,397 DEBUG Processing 174/586 atomic regions from SNP 51919 to 52519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,461 DEBUG Processing 272/644 atomic regions from SNP 81472 to 82072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,547 DEBUG Processing 263/667 atomic regions from SNP 78679 to 79279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,574 DEBUG Processing 30/548 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,593 DEBUG Processing 175/586 atomic regions from SNP 52219 to 52819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,607 DEBUG Processing 267/705 atomic regions from SNP 79847 to 80447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,660 DEBUG Processing 273/644 atomic regions from SNP 81772 to 82372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,791 DEBUG Processing 31/548 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:33,792 DEBUG Processing 264/667 atomic regions from SNP 78979 to 79579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:33,793 DEBUG Processing 176/586 atomic regions from SNP 52519 to 53119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:33,860 DEBUG Processing 274/644 atomic regions from SNP 82072 to 82672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:33,870 DEBUG Processing 268/705 atomic regions from SNP 80147 to 80747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:33,987 DEBUG Processing 177/586 atomic regions from SNP 52819 to 53419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,020 DEBUG Processing 32/548 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,040 DEBUG Processing 265/667 atomic regions from SNP 79279 to 79879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,064 DEBUG Processing 275/644 atomic regions from SNP 82372 to 82972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,110 DEBUG Processing 269/705 atomic regions from SNP 80447 to 81047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,173 DEBUG Processing 178/586 atomic regions from SNP 53119 to 53719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,244 DEBUG Processing 33/548 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,264 DEBUG Processing 276/644 atomic regions from SNP 82672 to 83272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,287 DEBUG Processing 266/667 atomic regions from SNP 79579 to 80179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,355 DEBUG Processing 270/705 atomic regions from SNP 80747 to 81347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,364 DEBUG Processing 179/586 atomic regions from SNP 53419 to 54019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,447 DEBUG Processing 34/548 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,458 DEBUG Processing 277/644 atomic regions from SNP 82972 to 83572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,531 DEBUG Processing 267/667 atomic regions from SNP 79879 to 80479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,559 DEBUG Processing 180/586 atomic regions from SNP 53719 to 54319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,598 DEBUG Processing 271/705 atomic regions from SNP 81047 to 81647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,649 DEBUG Processing 35/548 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,653 DEBUG Processing 278/644 atomic regions from SNP 83272 to 83872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,750 DEBUG Processing 268/667 atomic regions from SNP 80179 to 80779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:34,753 DEBUG Processing 181/586 atomic regions from SNP 54019 to 54619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,842 DEBUG Processing 272/705 atomic regions from SNP 81347 to 81947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:34,853 DEBUG Processing 279/644 atomic regions from SNP 83572 to 84172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:34,863 DEBUG Processing 36/548 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:34,942 DEBUG Processing 182/586 atomic regions from SNP 54319 to 54919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:34,966 DEBUG Processing 269/667 atomic regions from SNP 80479 to 81079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,052 DEBUG Processing 280/644 atomic regions from SNP 83872 to 84472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,075 DEBUG Processing 37/548 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,080 DEBUG Processing 273/705 atomic regions from SNP 81647 to 82247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,131 DEBUG Processing 183/586 atomic regions from SNP 54619 to 55219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,194 DEBUG Processing 270/667 atomic regions from SNP 80779 to 81379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,253 DEBUG Processing 281/644 atomic regions from SNP 84172 to 84772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,284 DEBUG Processing 38/548 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,318 DEBUG Processing 274/705 atomic regions from SNP 81947 to 82547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,322 DEBUG Processing 184/586 atomic regions from SNP 54919 to 55519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,332 DEBUG Subchromosome time: 192.97113871201873, subchromosome SNPs: 213551 2025-01-31 09:50:35,333 DEBUG Estimated BADs: [0.35, 1.05, 0.53, 5.26, 1.05, 0.53, 1.05, 0.15, 1.05, 6.31, 1.05, 2.10, 1.05, 0.53, 1.05, 3.16, 1.05, 2.10] SNP counts: [16094, 2964, 9021, 2412, 6670, 9595, 11738, 3000, 8004, 747, 22738, 17465, 26983, 23661, 19621, 8033, 15641, 9164] SNP IDs counts: [16094, 2964, 9021, 2412, 6670, 9595, 11738, 3000, 8004, 747, 22738, 17465, 26983, 23661, 19621, 8033, 15641, 9164] Critical gap: 603855bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.30Mbp, 15.00Mbp, 20.64Mbp, 21.92Mbp, 25.66Mbp, 31.03Mbp, 37.75Mbp, 39.74Mbp, 44.07Mbp, 44.47Mbp, 56.85Mbp, 66.07Mbp, 81.05Mbp, 95.54Mbp, 106.17Mbp, 110.65Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:50:35,333 DEBUG chr9 time: 192.9716490729479 s 2025-01-31 09:50:35,424 DEBUG Processing 271/667 atomic regions from SNP 81079 to 81679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,450 DEBUG chr9: Fitting background model for 18 segments 2025-01-31 09:50:35,454 DEBUG Processing 282/644 atomic regions from SNP 84472 to 85072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,489 DEBUG Processing 39/548 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,517 DEBUG Processing 185/586 atomic regions from SNP 55219 to 55819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,552 DEBUG Processing 275/705 atomic regions from SNP 82247 to 82847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,654 DEBUG Processing 272/667 atomic regions from SNP 81379 to 81979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,655 DEBUG Processing 283/644 atomic regions from SNP 84772 to 85372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,703 DEBUG Processing 40/548 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,717 DEBUG Processing 186/586 atomic regions from SNP 55519 to 56119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:35,806 DEBUG Processing 276/705 atomic regions from SNP 82547 to 83147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:35,857 DEBUG Processing 284/644 atomic regions from SNP 85072 to 85672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:35,887 DEBUG Processing 273/667 atomic regions from SNP 81679 to 82279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:35,913 DEBUG Processing 41/548 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:35,915 DEBUG Processing 187/586 atomic regions from SNP 55819 to 56419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,060 DEBUG Processing 277/705 atomic regions from SNP 82847 to 83447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,061 DEBUG Processing 285/644 atomic regions from SNP 85372 to 85972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,115 DEBUG Processing 188/586 atomic regions from SNP 56119 to 56719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,123 DEBUG Processing 274/667 atomic regions from SNP 81979 to 82579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,129 DEBUG Processing 42/548 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,260 DEBUG Processing 286/644 atomic regions from SNP 85672 to 86272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,293 DEBUG Processing 278/705 atomic regions from SNP 83147 to 83747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,314 DEBUG Processing 189/586 atomic regions from SNP 56419 to 57019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,353 DEBUG Processing 43/548 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,354 DEBUG Processing 275/667 atomic regions from SNP 82279 to 82879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,460 DEBUG Processing 287/644 atomic regions from SNP 85972 to 86572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,511 DEBUG Processing 190/586 atomic regions from SNP 56719 to 57319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,534 DEBUG Processing 279/705 atomic regions from SNP 83447 to 84047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,579 DEBUG Processing 44/548 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,587 DEBUG Processing 276/667 atomic regions from SNP 82579 to 83179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,660 DEBUG Processing 288/644 atomic regions from SNP 86272 to 86872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,707 DEBUG Processing 191/586 atomic regions from SNP 57019 to 57619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:36,782 DEBUG Processing 280/705 atomic regions from SNP 83747 to 84347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:36,811 DEBUG Processing 45/548 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:36,825 DEBUG Processing 277/667 atomic regions from SNP 82879 to 83479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:36,863 DEBUG Processing 289/644 atomic regions from SNP 86572 to 87172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:36,904 DEBUG Processing 192/586 atomic regions from SNP 57319 to 57919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,030 DEBUG Processing 46/548 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,031 DEBUG Processing 281/705 atomic regions from SNP 84047 to 84647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,058 DEBUG Processing 278/667 atomic regions from SNP 83179 to 83779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,071 DEBUG Processing 290/644 atomic regions from SNP 86872 to 87472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,110 DEBUG Processing 193/586 atomic regions from SNP 57619 to 58219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,249 DEBUG Processing 47/548 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,267 DEBUG Processing 282/705 atomic regions from SNP 84347 to 84947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,277 DEBUG Processing 291/644 atomic regions from SNP 87172 to 87772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,301 DEBUG Processing 279/667 atomic regions from SNP 83479 to 84079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,338 DEBUG Processing 194/586 atomic regions from SNP 57919 to 58519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,464 DEBUG Processing 48/548 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,480 DEBUG Processing 292/644 atomic regions from SNP 87472 to 88072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,504 DEBUG Processing 283/705 atomic regions from SNP 84647 to 85247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,553 DEBUG Processing 280/667 atomic regions from SNP 83779 to 84379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,566 DEBUG Processing 195/586 atomic regions from SNP 58219 to 58819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,671 DEBUG Processing 49/548 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,692 DEBUG Processing 293/644 atomic regions from SNP 87772 to 88372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,741 DEBUG Processing 284/705 atomic regions from SNP 84947 to 85547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:37,767 DEBUG Processing 196/586 atomic regions from SNP 58519 to 59119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,792 DEBUG Processing 281/667 atomic regions from SNP 84079 to 84679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:37,879 DEBUG Processing 50/548 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:37,925 DEBUG Processing 294/644 atomic regions from SNP 88072 to 88672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:37,966 DEBUG Processing 197/586 atomic regions from SNP 58819 to 59419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:37,974 DEBUG Processing 285/705 atomic regions from SNP 85247 to 85847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,022 DEBUG Processing 282/667 atomic regions from SNP 84379 to 84979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,095 DEBUG Processing 51/548 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,139 DEBUG Processing 295/644 atomic regions from SNP 88372 to 88972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,166 DEBUG Processing 198/586 atomic regions from SNP 59119 to 59719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,213 DEBUG Processing 286/705 atomic regions from SNP 85547 to 86147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,257 DEBUG Processing 283/667 atomic regions from SNP 84679 to 85279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,306 DEBUG Processing 52/548 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,347 DEBUG Processing 296/644 atomic regions from SNP 88672 to 89272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,365 DEBUG Processing 199/586 atomic regions from SNP 59419 to 60019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,454 DEBUG Processing 287/705 atomic regions from SNP 85847 to 86447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,493 DEBUG Processing 284/667 atomic regions from SNP 84979 to 85579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,519 DEBUG Processing 53/548 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,561 DEBUG Processing 297/644 atomic regions from SNP 88972 to 89572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,572 DEBUG Processing 200/586 atomic regions from SNP 59719 to 60319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,685 DEBUG Processing 288/705 atomic regions from SNP 86147 to 86747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,721 DEBUG Processing 285/667 atomic regions from SNP 85279 to 85879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,730 DEBUG Processing 54/548 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,769 DEBUG Processing 298/644 atomic regions from SNP 89272 to 89872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,777 DEBUG Processing 201/586 atomic regions from SNP 60019 to 60619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:38,919 DEBUG Processing 289/705 atomic regions from SNP 86447 to 87047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:38,937 DEBUG Processing 55/548 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:38,949 DEBUG Processing 286/667 atomic regions from SNP 85579 to 86179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:38,975 DEBUG Processing 299/644 atomic regions from SNP 89572 to 90172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:38,981 DEBUG Processing 202/586 atomic regions from SNP 60319 to 60919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,147 DEBUG Processing 56/548 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,156 DEBUG Processing 290/705 atomic regions from SNP 86747 to 87347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,181 DEBUG Processing 287/667 atomic regions from SNP 85879 to 86479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,182 DEBUG Processing 300/644 atomic regions from SNP 89872 to 90472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,184 DEBUG Processing 203/586 atomic regions from SNP 60619 to 61219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,352 DEBUG Processing 57/548 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,382 DEBUG Processing 301/644 atomic regions from SNP 90172 to 90772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,390 DEBUG Processing 291/705 atomic regions from SNP 87047 to 87647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,407 DEBUG Processing 204/586 atomic regions from SNP 60919 to 61519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,409 DEBUG Processing 288/667 atomic regions from SNP 86179 to 86779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,554 DEBUG Processing 58/548 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,587 DEBUG Processing 302/644 atomic regions from SNP 90472 to 91072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,615 DEBUG Processing 205/586 atomic regions from SNP 61219 to 61819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,620 DEBUG Processing 292/705 atomic regions from SNP 87347 to 87947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,627 DEBUG Processing 289/667 atomic regions from SNP 86479 to 87079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,771 DEBUG Processing 59/548 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:39,797 DEBUG Processing 303/644 atomic regions from SNP 90772 to 91372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:39,817 DEBUG Processing 206/586 atomic regions from SNP 61519 to 62119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:39,851 DEBUG Processing 293/705 atomic regions from SNP 87647 to 88247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:39,852 DEBUG Processing 290/667 atomic regions from SNP 86779 to 87379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:39,984 DEBUG Processing 60/548 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,012 DEBUG Processing 304/644 atomic regions from SNP 91072 to 91672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,025 DEBUG Processing 207/586 atomic regions from SNP 61819 to 62419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,079 DEBUG Processing 291/667 atomic regions from SNP 87079 to 87679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,088 DEBUG Processing 294/705 atomic regions from SNP 87947 to 88547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,204 DEBUG Processing 61/548 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,222 DEBUG Processing 305/644 atomic regions from SNP 91372 to 91972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,232 DEBUG Processing 208/586 atomic regions from SNP 62119 to 62719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,312 DEBUG Processing 292/667 atomic regions from SNP 87379 to 87979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,326 DEBUG Processing 295/705 atomic regions from SNP 88247 to 88847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,420 DEBUG Processing 62/548 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,428 DEBUG Processing 306/644 atomic regions from SNP 91672 to 92272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,437 DEBUG Processing 209/586 atomic regions from SNP 62419 to 63019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,544 DEBUG Processing 293/667 atomic regions from SNP 87679 to 88279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,565 DEBUG Processing 296/705 atomic regions from SNP 88547 to 89147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,628 DEBUG Processing 307/644 atomic regions from SNP 91972 to 92572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,635 DEBUG Processing 210/586 atomic regions from SNP 62719 to 63319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,638 DEBUG Processing 63/548 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:40,778 DEBUG Processing 294/667 atomic regions from SNP 87979 to 88579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:40,809 DEBUG Processing 297/705 atomic regions from SNP 88847 to 89447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:40,827 DEBUG Processing 308/644 atomic regions from SNP 92272 to 92872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:40,830 DEBUG Processing 211/586 atomic regions from SNP 63019 to 63619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:40,842 DEBUG Processing 64/548 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,016 DEBUG Processing 295/667 atomic regions from SNP 88279 to 88879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,033 DEBUG Processing 212/586 atomic regions from SNP 63319 to 63919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,034 DEBUG Processing 309/644 atomic regions from SNP 92572 to 93172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,053 DEBUG Processing 298/705 atomic regions from SNP 89147 to 89747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,055 DEBUG Processing 65/548 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,235 DEBUG Processing 213/586 atomic regions from SNP 63619 to 64219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,242 DEBUG Processing 310/644 atomic regions from SNP 92872 to 93472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,270 DEBUG Processing 296/667 atomic regions from SNP 88579 to 89179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,277 DEBUG Processing 66/548 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,299 DEBUG Processing 299/705 atomic regions from SNP 89447 to 90047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,435 DEBUG Processing 214/586 atomic regions from SNP 63919 to 64519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,445 DEBUG Processing 311/644 atomic regions from SNP 93172 to 93772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,492 DEBUG Processing 67/548 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,537 DEBUG Processing 297/667 atomic regions from SNP 88879 to 89479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,541 DEBUG Processing 300/705 atomic regions from SNP 89747 to 90347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,631 DEBUG Processing 215/586 atomic regions from SNP 64219 to 64819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,646 DEBUG Processing 312/644 atomic regions from SNP 93472 to 94072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,697 DEBUG Processing 68/548 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:41,786 DEBUG Processing 301/705 atomic regions from SNP 90047 to 90647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:41,794 DEBUG Processing 298/667 atomic regions from SNP 89179 to 89779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:41,835 DEBUG Processing 216/586 atomic regions from SNP 64519 to 65119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:41,853 DEBUG Processing 313/644 atomic regions from SNP 93772 to 94372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:41,893 DEBUG Processing 69/548 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,029 DEBUG Processing 302/705 atomic regions from SNP 90347 to 90947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,035 DEBUG Processing 299/667 atomic regions from SNP 89479 to 90079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,041 DEBUG Processing 217/586 atomic regions from SNP 64819 to 65419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,063 DEBUG Processing 314/644 atomic regions from SNP 94072 to 94672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,093 DEBUG Processing 70/548 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,250 DEBUG Processing 218/586 atomic regions from SNP 65119 to 65719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,274 DEBUG Processing 303/705 atomic regions from SNP 90647 to 91247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,277 DEBUG Processing 315/644 atomic regions from SNP 94372 to 94972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,296 DEBUG Processing 300/667 atomic regions from SNP 89779 to 90379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,310 DEBUG Processing 71/548 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,451 DEBUG Processing 219/586 atomic regions from SNP 65419 to 66019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,485 DEBUG Processing 316/644 atomic regions from SNP 94672 to 95272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,518 DEBUG Processing 304/705 atomic regions from SNP 90947 to 91547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,529 DEBUG Processing 72/548 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,563 DEBUG Processing 301/667 atomic regions from SNP 90079 to 90679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,654 DEBUG Processing 220/586 atomic regions from SNP 65719 to 66319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,686 DEBUG Processing 317/644 atomic regions from SNP 94972 to 95572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,732 DEBUG Processing 73/548 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,747 DEBUG Processing 305/705 atomic regions from SNP 91247 to 91847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:42,828 DEBUG Processing 302/667 atomic regions from SNP 90379 to 90979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:42,863 DEBUG Processing 221/586 atomic regions from SNP 66019 to 66619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:42,893 DEBUG Processing 318/644 atomic regions from SNP 95272 to 95872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:42,937 DEBUG Processing 74/548 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:42,976 DEBUG Processing 306/705 atomic regions from SNP 91547 to 92147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,076 DEBUG Processing 222/586 atomic regions from SNP 66319 to 66919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,089 DEBUG Processing 303/667 atomic regions from SNP 90679 to 91279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,107 DEBUG Processing 319/644 atomic regions from SNP 95572 to 96172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,152 DEBUG Processing 75/548 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,214 DEBUG Processing 307/705 atomic regions from SNP 91847 to 92447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,285 DEBUG Processing 223/586 atomic regions from SNP 66619 to 67219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,318 DEBUG Processing 320/644 atomic regions from SNP 95872 to 96472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,333 DEBUG Processing 304/667 atomic regions from SNP 90979 to 91579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,362 DEBUG Processing 76/548 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,452 DEBUG Processing 308/705 atomic regions from SNP 92147 to 92747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,494 DEBUG Processing 224/586 atomic regions from SNP 66919 to 67519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,526 DEBUG Processing 321/644 atomic regions from SNP 96172 to 96772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,560 DEBUG Processing 305/667 atomic regions from SNP 91279 to 91879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,570 DEBUG Processing 77/548 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,687 DEBUG Processing 309/705 atomic regions from SNP 92447 to 93047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,699 DEBUG Processing 225/586 atomic regions from SNP 67219 to 67819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,734 DEBUG Processing 322/644 atomic regions from SNP 96472 to 97072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,782 DEBUG Processing 78/548 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:43,792 DEBUG Processing 306/667 atomic regions from SNP 91579 to 92179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:43,901 DEBUG Processing 226/586 atomic regions from SNP 67519 to 68119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:43,929 DEBUG Processing 310/705 atomic regions from SNP 92747 to 93347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:43,940 DEBUG Processing 323/644 atomic regions from SNP 96772 to 97372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:43,996 DEBUG Processing 79/548 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,024 DEBUG Processing 307/667 atomic regions from SNP 91879 to 92479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,105 DEBUG Processing 227/586 atomic regions from SNP 67819 to 68419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,147 DEBUG Processing 324/644 atomic regions from SNP 97072 to 97672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,173 DEBUG Processing 311/705 atomic regions from SNP 93047 to 93647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,209 DEBUG Processing 80/548 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,253 DEBUG Processing 308/667 atomic regions from SNP 92179 to 92779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,306 DEBUG Processing 228/586 atomic regions from SNP 68119 to 68719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,352 DEBUG Processing 325/644 atomic regions from SNP 97372 to 97972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,414 DEBUG Processing 312/705 atomic regions from SNP 93347 to 93947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,425 DEBUG Processing 81/548 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,492 DEBUG Processing 309/667 atomic regions from SNP 92479 to 93079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,513 DEBUG Processing 229/586 atomic regions from SNP 68419 to 69019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,555 DEBUG Processing 326/644 atomic regions from SNP 97672 to 98272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,649 DEBUG Processing 313/705 atomic regions from SNP 93647 to 94247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,662 DEBUG Processing 82/548 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,724 DEBUG Processing 230/586 atomic regions from SNP 68719 to 69319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,732 DEBUG Processing 310/667 atomic regions from SNP 92779 to 93379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,765 DEBUG Processing 327/644 atomic regions from SNP 97972 to 98572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:44,886 DEBUG Processing 314/705 atomic regions from SNP 93947 to 94547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:44,898 DEBUG Processing 83/548 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:44,926 DEBUG Processing 231/586 atomic regions from SNP 69019 to 69619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:44,960 DEBUG Processing 311/667 atomic regions from SNP 93079 to 93679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:44,970 DEBUG Processing 328/644 atomic regions from SNP 98272 to 98872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,116 DEBUG Processing 84/548 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,119 DEBUG Processing 315/705 atomic regions from SNP 94247 to 94847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,128 DEBUG Processing 232/586 atomic regions from SNP 69319 to 69919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,178 DEBUG Processing 329/644 atomic regions from SNP 98572 to 99172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,188 DEBUG Processing 312/667 atomic regions from SNP 93379 to 93979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,327 DEBUG Processing 233/586 atomic regions from SNP 69619 to 70219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,352 DEBUG Processing 85/548 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,355 DEBUG Processing 316/705 atomic regions from SNP 94547 to 95147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,387 DEBUG Processing 330/644 atomic regions from SNP 98872 to 99472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,418 DEBUG Processing 313/667 atomic regions from SNP 93679 to 94279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,524 DEBUG Processing 234/586 atomic regions from SNP 69919 to 70519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,566 DEBUG Processing 86/548 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,594 DEBUG Processing 331/644 atomic regions from SNP 99172 to 99772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,612 DEBUG Processing 317/705 atomic regions from SNP 94847 to 95447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,647 DEBUG Processing 314/667 atomic regions from SNP 93979 to 94579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,719 DEBUG Processing 235/586 atomic regions from SNP 70219 to 70819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:45,798 DEBUG Processing 332/644 atomic regions from SNP 99472 to 100072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:45,799 DEBUG Processing 87/548 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:45,852 DEBUG Processing 318/705 atomic regions from SNP 95147 to 95747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:45,879 DEBUG Processing 315/667 atomic regions from SNP 94279 to 94879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:45,917 DEBUG Processing 236/586 atomic regions from SNP 70519 to 71119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,001 DEBUG Processing 333/644 atomic regions from SNP 99772 to 100372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,026 DEBUG Processing 88/548 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,092 DEBUG Processing 319/705 atomic regions from SNP 95447 to 96047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,108 DEBUG Processing 316/667 atomic regions from SNP 94579 to 95179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,113 DEBUG Processing 237/586 atomic regions from SNP 70819 to 71419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,199 DEBUG Processing 334/644 atomic regions from SNP 100072 to 100672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,250 DEBUG Processing 89/548 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,319 DEBUG Processing 238/586 atomic regions from SNP 71119 to 71719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,333 DEBUG Processing 320/705 atomic regions from SNP 95747 to 96347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,342 DEBUG Processing 317/667 atomic regions from SNP 94879 to 95479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,401 DEBUG Processing 335/644 atomic regions from SNP 100372 to 100972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,486 DEBUG Processing 90/548 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,522 DEBUG Processing 239/586 atomic regions from SNP 71419 to 72019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,580 DEBUG Processing 318/667 atomic regions from SNP 95179 to 95779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,599 DEBUG Processing 321/705 atomic regions from SNP 96047 to 96647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,602 DEBUG Processing 336/644 atomic regions from SNP 100672 to 101272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,707 DEBUG Processing 91/548 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,726 DEBUG Processing 240/586 atomic regions from SNP 71719 to 72319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:46,807 DEBUG Processing 337/644 atomic regions from SNP 100972 to 101572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:46,845 DEBUG Processing 319/667 atomic regions from SNP 95479 to 96079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:46,857 DEBUG Processing 322/705 atomic regions from SNP 96347 to 96947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:46,909 DEBUG Processing 92/548 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:46,927 DEBUG Processing 241/586 atomic regions from SNP 72019 to 72619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,009 DEBUG Processing 338/644 atomic regions from SNP 101272 to 101872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,100 DEBUG Processing 320/667 atomic regions from SNP 95779 to 96379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,129 DEBUG Processing 323/705 atomic regions from SNP 96647 to 97247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,132 DEBUG Processing 242/586 atomic regions from SNP 72319 to 72919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,140 DEBUG Processing 93/548 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,208 DEBUG Processing 339/644 atomic regions from SNP 101572 to 102172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,340 DEBUG Processing 243/586 atomic regions from SNP 72619 to 73219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,357 DEBUG Processing 321/667 atomic regions from SNP 96079 to 96679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,363 DEBUG Processing 94/548 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,386 DEBUG Processing 324/705 atomic regions from SNP 96947 to 97547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,416 DEBUG Processing 340/644 atomic regions from SNP 101872 to 102472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,545 DEBUG Processing 244/586 atomic regions from SNP 72919 to 73519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,585 DEBUG Processing 95/548 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,608 DEBUG Processing 322/667 atomic regions from SNP 96379 to 96979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,636 DEBUG Processing 341/644 atomic regions from SNP 102172 to 102772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,641 DEBUG Processing 325/705 atomic regions from SNP 97247 to 97847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,744 DEBUG Processing 245/586 atomic regions from SNP 73219 to 73819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:47,794 DEBUG Processing 96/548 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:47,842 DEBUG Processing 323/667 atomic regions from SNP 96679 to 97279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:47,847 DEBUG Processing 342/644 atomic regions from SNP 102472 to 103072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:47,888 DEBUG Processing 326/705 atomic regions from SNP 97547 to 98147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:47,947 DEBUG Processing 246/586 atomic regions from SNP 73519 to 74119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,000 DEBUG Processing 97/548 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,059 DEBUG Processing 343/644 atomic regions from SNP 102772 to 103372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,076 DEBUG Processing 324/667 atomic regions from SNP 96979 to 97579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,133 DEBUG Processing 327/705 atomic regions from SNP 97847 to 98447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,152 DEBUG Processing 247/586 atomic regions from SNP 73819 to 74419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,209 DEBUG Processing 98/548 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,267 DEBUG Processing 344/644 atomic regions from SNP 103072 to 103672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,308 DEBUG Processing 325/667 atomic regions from SNP 97279 to 97879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,357 DEBUG Processing 248/586 atomic regions from SNP 74119 to 74719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,388 DEBUG Processing 328/705 atomic regions from SNP 98147 to 98747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,425 DEBUG Processing 99/548 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,469 DEBUG Processing 345/644 atomic regions from SNP 103372 to 103972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,531 DEBUG Processing 326/667 atomic regions from SNP 97579 to 98179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,554 DEBUG Processing 249/586 atomic regions from SNP 74419 to 75019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,642 DEBUG Processing 100/548 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,651 DEBUG Processing 329/705 atomic regions from SNP 98447 to 99047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,671 DEBUG Processing 346/644 atomic regions from SNP 103672 to 104272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,749 DEBUG Processing 250/586 atomic regions from SNP 74719 to 75319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,750 DEBUG Processing 327/667 atomic regions from SNP 97879 to 98479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:48,849 DEBUG Processing 101/548 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:48,872 DEBUG Processing 347/644 atomic regions from SNP 103972 to 104572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:48,892 DEBUG Processing 330/705 atomic regions from SNP 98747 to 99347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:48,949 DEBUG Processing 251/586 atomic regions from SNP 75019 to 75619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:48,986 DEBUG Processing 328/667 atomic regions from SNP 98179 to 98779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,080 DEBUG Processing 102/548 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,082 DEBUG Processing 348/644 atomic regions from SNP 104272 to 104872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,127 DEBUG Processing 331/705 atomic regions from SNP 99047 to 99647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,147 DEBUG Processing 252/586 atomic regions from SNP 75319 to 75919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,235 DEBUG Processing 329/667 atomic regions from SNP 98479 to 99079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,311 DEBUG Processing 349/644 atomic regions from SNP 104572 to 105172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,317 DEBUG Processing 103/548 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,342 DEBUG Processing 253/586 atomic regions from SNP 75619 to 76219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,372 DEBUG Processing 332/705 atomic regions from SNP 99347 to 99947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,493 DEBUG Processing 330/667 atomic regions from SNP 98779 to 99379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,523 DEBUG Processing 104/548 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,539 DEBUG Processing 254/586 atomic regions from SNP 75919 to 76519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,545 DEBUG Processing 350/644 atomic regions from SNP 104872 to 105472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,612 DEBUG Processing 333/705 atomic regions from SNP 99647 to 100247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,733 DEBUG Processing 331/667 atomic regions from SNP 99079 to 99679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,741 DEBUG Processing 105/548 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,747 DEBUG Processing 255/586 atomic regions from SNP 76219 to 76819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,758 DEBUG Processing 351/644 atomic regions from SNP 105172 to 105772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:49,847 DEBUG Processing 334/705 atomic regions from SNP 99947 to 100547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:49,956 DEBUG Processing 106/548 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:49,959 DEBUG Processing 256/586 atomic regions from SNP 76519 to 77119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:49,973 DEBUG Processing 332/667 atomic regions from SNP 99379 to 99979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:49,990 DEBUG Processing 352/644 atomic regions from SNP 105472 to 106072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,079 DEBUG Processing 335/705 atomic regions from SNP 100247 to 100847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,166 DEBUG Processing 257/586 atomic regions from SNP 76819 to 77419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,187 DEBUG Processing 107/548 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,201 DEBUG Processing 333/667 atomic regions from SNP 99679 to 100279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,212 DEBUG Processing 353/644 atomic regions from SNP 105772 to 106372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,306 DEBUG Processing 336/705 atomic regions from SNP 100547 to 101147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,368 DEBUG Processing 258/586 atomic regions from SNP 77119 to 77719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,396 DEBUG Processing 108/548 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,424 DEBUG Processing 354/644 atomic regions from SNP 106072 to 106672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,429 DEBUG Processing 334/667 atomic regions from SNP 99979 to 100579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,540 DEBUG Processing 337/705 atomic regions from SNP 100847 to 101447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,564 DEBUG Processing 259/586 atomic regions from SNP 77419 to 78019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,601 DEBUG Processing 109/548 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,630 DEBUG Processing 355/644 atomic regions from SNP 106372 to 106972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,653 DEBUG Processing 335/667 atomic regions from SNP 100279 to 100879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,763 DEBUG Processing 260/586 atomic regions from SNP 77719 to 78319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:50,775 DEBUG Processing 338/705 atomic regions from SNP 101147 to 101747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:50,810 DEBUG Processing 110/548 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:50,832 DEBUG Processing 356/644 atomic regions from SNP 106672 to 107272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:50,878 DEBUG Processing 336/667 atomic regions from SNP 100579 to 101179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:50,967 DEBUG Processing 261/586 atomic regions from SNP 78019 to 78619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,010 DEBUG Processing 339/705 atomic regions from SNP 101447 to 102047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,019 DEBUG Processing 111/548 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,037 DEBUG Processing 357/644 atomic regions from SNP 106972 to 107572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,098 DEBUG Processing 337/667 atomic regions from SNP 100879 to 101479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,174 DEBUG Processing 262/586 atomic regions from SNP 78319 to 78919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,228 DEBUG Processing 112/548 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,245 DEBUG Processing 340/705 atomic regions from SNP 101747 to 102347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,245 DEBUG Processing 358/644 atomic regions from SNP 107272 to 107872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,320 DEBUG Processing 338/667 atomic regions from SNP 101179 to 101779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,374 DEBUG Processing 263/586 atomic regions from SNP 78619 to 79219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,431 DEBUG Processing 113/548 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,452 DEBUG Processing 359/644 atomic regions from SNP 107572 to 108172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,478 DEBUG Processing 341/705 atomic regions from SNP 102047 to 102647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,547 DEBUG Processing 339/667 atomic regions from SNP 101479 to 102079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,572 DEBUG Processing 264/586 atomic regions from SNP 78919 to 79519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,635 DEBUG Processing 114/548 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,676 DEBUG Processing 360/644 atomic regions from SNP 107872 to 108472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,709 DEBUG Processing 342/705 atomic regions from SNP 102347 to 102947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,773 DEBUG Processing 340/667 atomic regions from SNP 101779 to 102379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:51,777 DEBUG Processing 265/586 atomic regions from SNP 79219 to 79819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:51,842 DEBUG Processing 115/548 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:51,887 DEBUG Processing 361/644 atomic regions from SNP 108172 to 108772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:51,955 DEBUG Processing 343/705 atomic regions from SNP 102647 to 103247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:51,985 DEBUG Processing 266/586 atomic regions from SNP 79519 to 80119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,004 DEBUG Processing 341/667 atomic regions from SNP 102079 to 102679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,057 DEBUG Processing 116/548 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,092 DEBUG Processing 362/644 atomic regions from SNP 108472 to 109072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,194 DEBUG Processing 267/586 atomic regions from SNP 79819 to 80419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,197 DEBUG Processing 344/705 atomic regions from SNP 102947 to 103547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,233 DEBUG Processing 342/667 atomic regions from SNP 102379 to 102979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,273 DEBUG Processing 117/548 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,297 DEBUG Processing 363/644 atomic regions from SNP 108772 to 109372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,397 DEBUG Processing 268/586 atomic regions from SNP 80119 to 80719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,435 DEBUG Processing 345/705 atomic regions from SNP 103247 to 103847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,466 DEBUG Processing 343/667 atomic regions from SNP 102679 to 103279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,484 DEBUG Processing 118/548 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,508 DEBUG Processing 364/644 atomic regions from SNP 109072 to 109672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,603 DEBUG Processing 269/586 atomic regions from SNP 80419 to 81019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,677 DEBUG Processing 346/705 atomic regions from SNP 103547 to 104147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,696 DEBUG Processing 119/548 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,702 DEBUG Processing 344/667 atomic regions from SNP 102979 to 103579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,719 DEBUG Processing 365/644 atomic regions from SNP 109372 to 109972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:52,810 DEBUG Processing 270/586 atomic regions from SNP 80719 to 81319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:52,912 DEBUG Processing 120/548 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:52,921 DEBUG Processing 347/705 atomic regions from SNP 103847 to 104447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:52,938 DEBUG Processing 345/667 atomic regions from SNP 103279 to 103879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:52,939 DEBUG Processing 366/644 atomic regions from SNP 109672 to 110272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,014 DEBUG Processing 271/586 atomic regions from SNP 81019 to 81619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,129 DEBUG Processing 121/548 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,158 DEBUG Processing 367/644 atomic regions from SNP 109972 to 110572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,167 DEBUG Processing 348/705 atomic regions from SNP 104147 to 104747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,176 DEBUG Processing 346/667 atomic regions from SNP 103579 to 104179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,220 DEBUG Processing 272/586 atomic regions from SNP 81319 to 81919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,343 DEBUG Processing 122/548 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,376 DEBUG Processing 368/644 atomic regions from SNP 110272 to 110872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,408 DEBUG Processing 349/705 atomic regions from SNP 104447 to 105047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,412 DEBUG Processing 347/667 atomic regions from SNP 103879 to 104479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,427 DEBUG Processing 273/586 atomic regions from SNP 81619 to 82219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,549 DEBUG Processing 123/548 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,593 DEBUG Processing 369/644 atomic regions from SNP 110572 to 111172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,636 DEBUG Processing 274/586 atomic regions from SNP 81919 to 82519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,647 DEBUG Processing 350/705 atomic regions from SNP 104747 to 105347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,671 DEBUG Processing 348/667 atomic regions from SNP 104179 to 104779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,757 DEBUG Processing 124/548 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:53,812 DEBUG Processing 370/644 atomic regions from SNP 110872 to 111472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:53,845 DEBUG Processing 275/586 atomic regions from SNP 82219 to 82819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:53,886 DEBUG Processing 351/705 atomic regions from SNP 105047 to 105647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:53,904 DEBUG Processing 349/667 atomic regions from SNP 104479 to 105079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:53,966 DEBUG Processing 125/548 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,028 DEBUG Processing 371/644 atomic regions from SNP 111172 to 111772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,057 DEBUG Processing 276/586 atomic regions from SNP 82519 to 83119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,125 DEBUG Processing 352/705 atomic regions from SNP 105347 to 105947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,146 DEBUG Processing 350/667 atomic regions from SNP 104779 to 105379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,177 DEBUG Processing 126/548 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,241 DEBUG Processing 372/644 atomic regions from SNP 111472 to 112072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,267 DEBUG Processing 277/586 atomic regions from SNP 82819 to 83419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,366 DEBUG Processing 353/705 atomic regions from SNP 105647 to 106247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,389 DEBUG Processing 351/667 atomic regions from SNP 105079 to 105679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,394 DEBUG Processing 127/548 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,458 DEBUG Processing 373/644 atomic regions from SNP 111772 to 112372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,481 DEBUG Processing 278/586 atomic regions from SNP 83119 to 83719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,605 DEBUG Processing 354/705 atomic regions from SNP 105947 to 106547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,605 DEBUG Processing 128/548 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,651 DEBUG Processing 352/667 atomic regions from SNP 105379 to 105979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:54,670 DEBUG Processing 374/644 atomic regions from SNP 112072 to 112672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,689 DEBUG Processing 279/586 atomic regions from SNP 83419 to 84019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,815 DEBUG Processing 129/548 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:54,842 DEBUG Processing 355/705 atomic regions from SNP 106247 to 106847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:54,881 DEBUG Processing 375/644 atomic regions from SNP 112372 to 112972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:54,896 DEBUG Processing 280/586 atomic regions from SNP 83719 to 84319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:54,899 DEBUG Processing 353/667 atomic regions from SNP 105679 to 106279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,024 DEBUG Processing 130/548 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,075 DEBUG Processing 356/705 atomic regions from SNP 106547 to 107147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,090 DEBUG Processing 376/644 atomic regions from SNP 112672 to 113272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,102 DEBUG Processing 281/586 atomic regions from SNP 84019 to 84619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,142 DEBUG Processing 354/667 atomic regions from SNP 105979 to 106579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,235 DEBUG Processing 131/548 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,299 DEBUG Processing 377/644 atomic regions from SNP 112972 to 113572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,307 DEBUG Processing 282/586 atomic regions from SNP 84319 to 84919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,310 DEBUG Processing 357/705 atomic regions from SNP 106847 to 107447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,367 DEBUG Processing 355/667 atomic regions from SNP 106279 to 106879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,444 DEBUG Processing 132/548 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,511 DEBUG Processing 378/644 atomic regions from SNP 113272 to 113872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,513 DEBUG Processing 283/586 atomic regions from SNP 84619 to 85219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,546 DEBUG Processing 358/705 atomic regions from SNP 107147 to 107747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,596 DEBUG Processing 356/667 atomic regions from SNP 106579 to 107179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,653 DEBUG Processing 133/548 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,719 DEBUG Processing 284/586 atomic regions from SNP 84919 to 85519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,723 DEBUG Processing 379/644 atomic regions from SNP 113572 to 114172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:55,774 DEBUG Processing 359/705 atomic regions from SNP 107447 to 108047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:55,821 DEBUG Processing 357/667 atomic regions from SNP 106879 to 107479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:55,864 DEBUG Processing 134/548 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:55,930 DEBUG Processing 285/586 atomic regions from SNP 85219 to 85819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:55,937 DEBUG Processing 380/644 atomic regions from SNP 113872 to 114472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,005 DEBUG Processing 360/705 atomic regions from SNP 107747 to 108347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,070 DEBUG Processing 358/667 atomic regions from SNP 107179 to 107779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,073 DEBUG Processing 135/548 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,142 DEBUG Processing 286/586 atomic regions from SNP 85519 to 86119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,154 DEBUG Processing 381/644 atomic regions from SNP 114172 to 114772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,237 DEBUG Processing 361/705 atomic regions from SNP 108047 to 108647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,274 DEBUG Processing 136/548 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,297 DEBUG Processing 359/667 atomic regions from SNP 107479 to 108079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,354 DEBUG Processing 287/586 atomic regions from SNP 85819 to 86419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,371 DEBUG Processing 382/644 atomic regions from SNP 114472 to 115072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,472 DEBUG Processing 362/705 atomic regions from SNP 108347 to 108947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,479 DEBUG Processing 137/548 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,522 DEBUG Processing 360/667 atomic regions from SNP 107779 to 108379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,567 DEBUG Processing 288/586 atomic regions from SNP 86119 to 86719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,589 DEBUG Processing 383/644 atomic regions from SNP 114772 to 115372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,693 DEBUG Processing 138/548 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,713 DEBUG Processing 363/705 atomic regions from SNP 108647 to 109247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,753 DEBUG Processing 361/667 atomic regions from SNP 108079 to 108679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:56,776 DEBUG Processing 289/586 atomic regions from SNP 86419 to 87019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,804 DEBUG Processing 384/644 atomic regions from SNP 115072 to 115672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:56,904 DEBUG Processing 139/548 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:56,947 DEBUG Processing 364/705 atomic regions from SNP 108947 to 109547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:56,980 DEBUG Processing 290/586 atomic regions from SNP 86719 to 87319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:56,982 DEBUG Processing 362/667 atomic regions from SNP 108379 to 108979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,017 DEBUG Processing 385/644 atomic regions from SNP 115372 to 115972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,105 DEBUG Processing 140/548 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,181 DEBUG Processing 365/705 atomic regions from SNP 109247 to 109847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,185 DEBUG Processing 291/586 atomic regions from SNP 87019 to 87619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,213 DEBUG Processing 363/667 atomic regions from SNP 108679 to 109279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,232 DEBUG Processing 386/644 atomic regions from SNP 115672 to 116272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,312 DEBUG Processing 141/548 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,390 DEBUG Processing 292/586 atomic regions from SNP 87319 to 87919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,416 DEBUG Processing 366/705 atomic regions from SNP 109547 to 110147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,438 DEBUG Processing 387/644 atomic regions from SNP 115972 to 116572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,446 DEBUG Processing 364/667 atomic regions from SNP 108979 to 109579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,525 DEBUG Processing 142/548 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,601 DEBUG Processing 293/586 atomic regions from SNP 87619 to 88219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,645 DEBUG Processing 367/705 atomic regions from SNP 109847 to 110447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,658 DEBUG Processing 388/644 atomic regions from SNP 116272 to 116872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,667 DEBUG Processing 365/667 atomic regions from SNP 109279 to 109879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,739 DEBUG Processing 143/548 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:57,820 DEBUG Processing 294/586 atomic regions from SNP 87919 to 88519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:57,871 DEBUG Processing 389/644 atomic regions from SNP 116572 to 117172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:57,883 DEBUG Processing 368/705 atomic regions from SNP 110147 to 110747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:57,893 DEBUG Processing 366/667 atomic regions from SNP 109579 to 110179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:57,941 DEBUG Processing 144/548 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,035 DEBUG Processing 295/586 atomic regions from SNP 88219 to 88819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,088 DEBUG Processing 390/644 atomic regions from SNP 116872 to 117472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,122 DEBUG Processing 369/705 atomic regions from SNP 110447 to 111047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,123 DEBUG Processing 367/667 atomic regions from SNP 109879 to 110479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,146 DEBUG Processing 145/548 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,242 DEBUG Processing 296/586 atomic regions from SNP 88519 to 89119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,309 DEBUG Processing 391/644 atomic regions from SNP 117172 to 117772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,363 DEBUG Processing 368/667 atomic regions from SNP 110179 to 110779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,364 DEBUG Processing 146/548 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,371 DEBUG Processing 370/705 atomic regions from SNP 110747 to 111347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,438 DEBUG Processing 297/586 atomic regions from SNP 88819 to 89419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,530 DEBUG Processing 392/644 atomic regions from SNP 117472 to 118072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,586 DEBUG Processing 147/548 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,606 DEBUG Processing 369/667 atomic regions from SNP 110479 to 111079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,617 DEBUG Processing 371/705 atomic regions from SNP 111047 to 111647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,638 DEBUG Processing 298/586 atomic regions from SNP 89119 to 89719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,765 DEBUG Processing 393/644 atomic regions from SNP 117772 to 118372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:58,799 DEBUG Processing 148/548 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:58,846 DEBUG Processing 370/667 atomic regions from SNP 110779 to 111379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:58,850 DEBUG Processing 299/586 atomic regions from SNP 89419 to 90019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:58,867 DEBUG Processing 372/705 atomic regions from SNP 111347 to 111947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:58,989 DEBUG Processing 394/644 atomic regions from SNP 118072 to 118672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,004 DEBUG Processing 149/548 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,060 DEBUG Processing 300/586 atomic regions from SNP 89719 to 90319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,080 DEBUG Processing 371/667 atomic regions from SNP 111079 to 111679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,110 DEBUG Processing 373/705 atomic regions from SNP 111647 to 112247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,202 DEBUG Processing 150/548 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,224 DEBUG Processing 395/644 atomic regions from SNP 118372 to 118972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,261 DEBUG Processing 301/586 atomic regions from SNP 90019 to 90619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,305 DEBUG Processing 372/667 atomic regions from SNP 111379 to 111979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,350 DEBUG Processing 374/705 atomic regions from SNP 111947 to 112547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,410 DEBUG Processing 151/548 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,447 DEBUG Processing 396/644 atomic regions from SNP 118672 to 119272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,461 DEBUG Processing 302/586 atomic regions from SNP 90319 to 90919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,555 DEBUG Processing 373/667 atomic regions from SNP 111679 to 112279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,582 DEBUG Processing 375/705 atomic regions from SNP 112247 to 112847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,621 DEBUG Processing 152/548 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,658 DEBUG Processing 397/644 atomic regions from SNP 118972 to 119572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,668 DEBUG Processing 303/586 atomic regions from SNP 90619 to 91219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:50:59,797 DEBUG Processing 374/667 atomic regions from SNP 111979 to 112579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:50:59,814 DEBUG Processing 376/705 atomic regions from SNP 112547 to 113147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:50:59,832 DEBUG Processing 153/548 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:50:59,868 DEBUG Processing 398/644 atomic regions from SNP 119272 to 119872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:50:59,875 DEBUG Processing 304/586 atomic regions from SNP 90919 to 91519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,019 DEBUG Processing 375/667 atomic regions from SNP 112279 to 112879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,042 DEBUG Processing 154/548 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,051 DEBUG Processing 377/705 atomic regions from SNP 112847 to 113447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,081 DEBUG Processing 399/644 atomic regions from SNP 119572 to 120172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,083 DEBUG Processing 305/586 atomic regions from SNP 91219 to 91819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,247 DEBUG Processing 376/667 atomic regions from SNP 112579 to 113179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,248 DEBUG Processing 155/548 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,286 DEBUG Processing 306/586 atomic regions from SNP 91519 to 92119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,287 DEBUG Processing 378/705 atomic regions from SNP 113147 to 113747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,288 DEBUG Processing 400/644 atomic regions from SNP 119872 to 120472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,461 DEBUG Processing 156/548 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,480 DEBUG Processing 377/667 atomic regions from SNP 112879 to 113479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,490 DEBUG Processing 307/586 atomic regions from SNP 91819 to 92419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,497 DEBUG Processing 401/644 atomic regions from SNP 120172 to 120772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,528 DEBUG Processing 379/705 atomic regions from SNP 113447 to 114047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,673 DEBUG Processing 157/548 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,688 DEBUG Processing 308/586 atomic regions from SNP 92119 to 92719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,702 DEBUG Processing 402/644 atomic regions from SNP 120472 to 121072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,707 DEBUG Processing 378/667 atomic regions from SNP 113179 to 113779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:00,768 DEBUG Processing 380/705 atomic regions from SNP 113747 to 114347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:00,882 DEBUG Processing 158/548 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:00,886 DEBUG Processing 309/586 atomic regions from SNP 92419 to 93019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:00,905 DEBUG Processing 403/644 atomic regions from SNP 120772 to 121372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:00,938 DEBUG Processing 379/667 atomic regions from SNP 113479 to 114079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,005 DEBUG Processing 381/705 atomic regions from SNP 114047 to 114647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,083 DEBUG Processing 310/586 atomic regions from SNP 92719 to 93319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,087 DEBUG Processing 159/548 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,108 DEBUG Processing 404/644 atomic regions from SNP 121072 to 121672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,163 DEBUG Processing 380/667 atomic regions from SNP 113779 to 114379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,255 DEBUG Processing 382/705 atomic regions from SNP 114347 to 114947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,287 DEBUG Processing 311/586 atomic regions from SNP 93019 to 93619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,299 DEBUG Processing 160/548 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,312 DEBUG Processing 405/644 atomic regions from SNP 121372 to 121972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,387 DEBUG Processing 381/667 atomic regions from SNP 114079 to 114679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,491 DEBUG Processing 312/586 atomic regions from SNP 93319 to 93919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,511 DEBUG Processing 161/548 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,514 DEBUG Processing 406/644 atomic regions from SNP 121672 to 122272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,526 DEBUG Processing 383/705 atomic regions from SNP 114647 to 115247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,607 DEBUG Processing 382/667 atomic regions from SNP 114379 to 114979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,700 DEBUG Processing 313/586 atomic regions from SNP 93619 to 94219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,716 DEBUG Processing 162/548 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,725 DEBUG Processing 407/644 atomic regions from SNP 121972 to 122572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:01,780 DEBUG Processing 384/705 atomic regions from SNP 114947 to 115547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:01,833 DEBUG Processing 383/667 atomic regions from SNP 114679 to 115279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:01,900 DEBUG Processing 314/586 atomic regions from SNP 93919 to 94519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:01,918 DEBUG Processing 163/548 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:01,931 DEBUG Processing 408/644 atomic regions from SNP 122272 to 122872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,045 DEBUG Processing 385/705 atomic regions from SNP 115247 to 115847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,063 DEBUG Processing 384/667 atomic regions from SNP 114979 to 115579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,101 DEBUG Processing 315/586 atomic regions from SNP 94219 to 94819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,123 DEBUG Processing 164/548 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,135 DEBUG Processing 409/644 atomic regions from SNP 122572 to 123172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,292 DEBUG Processing 385/667 atomic regions from SNP 115279 to 115879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,297 DEBUG Processing 316/586 atomic regions from SNP 94519 to 95119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,308 DEBUG Processing 386/705 atomic regions from SNP 115547 to 116147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,335 DEBUG Processing 165/548 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,340 DEBUG Processing 410/644 atomic regions from SNP 122872 to 123472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,496 DEBUG Processing 317/586 atomic regions from SNP 94819 to 95419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,521 DEBUG Processing 386/667 atomic regions from SNP 115579 to 116179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,549 DEBUG Processing 411/644 atomic regions from SNP 123172 to 123772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,549 DEBUG Processing 166/548 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,577 DEBUG Processing 387/705 atomic regions from SNP 115847 to 116447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,697 DEBUG Processing 318/586 atomic regions from SNP 95119 to 95719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,743 DEBUG Processing 387/667 atomic regions from SNP 115879 to 116479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:02,748 DEBUG Processing 412/644 atomic regions from SNP 123472 to 124072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,755 DEBUG Processing 167/548 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,845 DEBUG Processing 388/705 atomic regions from SNP 116147 to 116747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:02,860 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:51:02,902 DEBUG Processing 319/586 atomic regions from SNP 95419 to 96019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:02,945 DEBUG Processing 413/644 atomic regions from SNP 123772 to 124372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:02,958 DEBUG Processing 168/548 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:02,963 DEBUG Processing 388/667 atomic regions from SNP 116179 to 116779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,096 DEBUG Processing 320/586 atomic regions from SNP 95719 to 96319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,112 DEBUG Processing 389/705 atomic regions from SNP 116447 to 117047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,145 DEBUG Processing 414/644 atomic regions from SNP 124072 to 124672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,169 DEBUG Processing 169/548 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,197 DEBUG Processing 389/667 atomic regions from SNP 116479 to 117079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,289 DEBUG Processing 321/586 atomic regions from SNP 96019 to 96619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,352 DEBUG Processing 390/705 atomic regions from SNP 116747 to 117347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,368 DEBUG Processing 415/644 atomic regions from SNP 124372 to 124972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,388 DEBUG Processing 170/548 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,442 DEBUG Processing 390/667 atomic regions from SNP 116779 to 117379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,476 DEBUG Processing 322/586 atomic regions from SNP 96319 to 96919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,586 DEBUG Processing 416/644 atomic regions from SNP 124672 to 125272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,591 DEBUG Processing 391/705 atomic regions from SNP 117047 to 117647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,607 DEBUG Processing 171/548 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,670 DEBUG Processing 323/586 atomic regions from SNP 96619 to 97219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,673 DEBUG Processing 391/667 atomic regions from SNP 117079 to 117679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:03,794 DEBUG Processing 417/644 atomic regions from SNP 124972 to 125572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:03,820 DEBUG Processing 172/548 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:03,827 DEBUG Processing 392/705 atomic regions from SNP 117347 to 117947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:03,869 DEBUG Processing 324/586 atomic regions from SNP 96919 to 97519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:03,905 DEBUG Processing 392/667 atomic regions from SNP 117379 to 117979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,003 DEBUG Processing 418/644 atomic regions from SNP 125272 to 125872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,036 DEBUG Processing 173/548 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,068 DEBUG Processing 325/586 atomic regions from SNP 97219 to 97819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,077 DEBUG Processing 393/705 atomic regions from SNP 117647 to 118247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,137 DEBUG Processing 393/667 atomic regions from SNP 117679 to 118279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,216 DEBUG Processing 419/644 atomic regions from SNP 125572 to 126172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,258 DEBUG Processing 174/548 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,264 DEBUG Processing 326/586 atomic regions from SNP 97519 to 98119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,316 DEBUG Processing 394/705 atomic regions from SNP 117947 to 118547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,365 DEBUG Processing 394/667 atomic regions from SNP 117979 to 118579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,425 DEBUG Processing 420/644 atomic regions from SNP 125872 to 126472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,463 DEBUG Processing 327/586 atomic regions from SNP 97819 to 98419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,469 DEBUG Processing 175/548 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,541 DEBUG Processing 395/705 atomic regions from SNP 118247 to 118847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,599 DEBUG Processing 395/667 atomic regions from SNP 118279 to 118879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,627 DEBUG Processing 421/644 atomic regions from SNP 126172 to 126772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,662 DEBUG Processing 328/586 atomic regions from SNP 98119 to 98719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,680 DEBUG Processing 176/548 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,767 DEBUG Processing 396/705 atomic regions from SNP 118547 to 119147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:04,826 DEBUG Processing 422/644 atomic regions from SNP 126472 to 127072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:04,845 DEBUG Processing 396/667 atomic regions from SNP 118579 to 119179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:04,859 DEBUG Processing 329/586 atomic regions from SNP 98419 to 99019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:04,899 DEBUG Processing 177/548 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:04,993 DEBUG Processing 397/705 atomic regions from SNP 118847 to 119447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,023 DEBUG Processing 423/644 atomic regions from SNP 126772 to 127372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,054 DEBUG Processing 330/586 atomic regions from SNP 98719 to 99319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,089 DEBUG Processing 397/667 atomic regions from SNP 118879 to 119479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,109 DEBUG Processing 178/548 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,221 DEBUG Processing 398/705 atomic regions from SNP 119147 to 119747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,225 DEBUG Processing 424/644 atomic regions from SNP 127072 to 127672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,250 DEBUG Processing 331/586 atomic regions from SNP 99019 to 99619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,310 DEBUG Processing 179/548 atomic regions from SNP 53578 to 54179 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,320 DEBUG Processing 398/667 atomic regions from SNP 119179 to 119779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,429 DEBUG Processing 425/644 atomic regions from SNP 127372 to 127972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,456 DEBUG Processing 332/586 atomic regions from SNP 99319 to 99919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,456 DEBUG Processing 399/705 atomic regions from SNP 119447 to 120047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,517 DEBUG Processing 180/548 atomic regions from SNP 53879 to 54480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,552 DEBUG Processing 399/667 atomic regions from SNP 119479 to 120079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,636 DEBUG Processing 426/644 atomic regions from SNP 127672 to 128272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,662 DEBUG Processing 333/586 atomic regions from SNP 99619 to 100219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,700 DEBUG Processing 400/705 atomic regions from SNP 119747 to 120347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:05,728 DEBUG Processing 181/548 atomic regions from SNP 54180 to 54781 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,797 DEBUG Processing 400/667 atomic regions from SNP 119779 to 120379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:05,849 DEBUG Processing 427/644 atomic regions from SNP 127972 to 128572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:05,877 DEBUG Processing 334/586 atomic regions from SNP 99919 to 100519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:05,940 DEBUG Processing 182/548 atomic regions from SNP 54481 to 55082 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:05,942 DEBUG Processing 401/705 atomic regions from SNP 120047 to 120647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,034 DEBUG Processing 401/667 atomic regions from SNP 120079 to 120679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,051 DEBUG Processing 428/644 atomic regions from SNP 128272 to 128872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,074 DEBUG Processing 335/586 atomic regions from SNP 100219 to 100819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,147 DEBUG Processing 183/548 atomic regions from SNP 54782 to 55383 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,177 DEBUG Processing 402/705 atomic regions from SNP 120347 to 120947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,250 DEBUG Processing 429/644 atomic regions from SNP 128572 to 129172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,262 DEBUG Processing 402/667 atomic regions from SNP 120379 to 120979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,269 DEBUG Processing 336/586 atomic regions from SNP 100519 to 101119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,357 DEBUG Processing 184/548 atomic regions from SNP 55083 to 55684 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,420 DEBUG Processing 403/705 atomic regions from SNP 120647 to 121247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,453 DEBUG Processing 430/644 atomic regions from SNP 128872 to 129472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,466 DEBUG Processing 337/586 atomic regions from SNP 100819 to 101419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,487 DEBUG Processing 403/667 atomic regions from SNP 120679 to 121279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,569 DEBUG Processing 185/548 atomic regions from SNP 55384 to 55985 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,655 DEBUG Processing 431/644 atomic regions from SNP 129172 to 129772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,662 DEBUG Processing 338/586 atomic regions from SNP 101119 to 101719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,667 DEBUG Processing 404/705 atomic regions from SNP 120947 to 121547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,710 DEBUG Processing 404/667 atomic regions from SNP 120979 to 121579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,781 DEBUG Processing 186/548 atomic regions from SNP 55685 to 56286 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:06,859 DEBUG Processing 432/644 atomic regions from SNP 129472 to 130072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:06,862 DEBUG Processing 339/586 atomic regions from SNP 101419 to 102019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:06,906 DEBUG Processing 405/705 atomic regions from SNP 121247 to 121847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:06,937 DEBUG Processing 405/667 atomic regions from SNP 121279 to 121879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:06,989 DEBUG Processing 187/548 atomic regions from SNP 55986 to 56587 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,065 DEBUG Processing 340/586 atomic regions from SNP 101719 to 102319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,065 DEBUG Processing 433/644 atomic regions from SNP 129772 to 130372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,146 DEBUG Processing 406/705 atomic regions from SNP 121547 to 122147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,168 DEBUG Processing 406/667 atomic regions from SNP 121579 to 122179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,197 DEBUG Processing 188/548 atomic regions from SNP 56287 to 56888 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,262 DEBUG Processing 341/586 atomic regions from SNP 102019 to 102619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,268 DEBUG Processing 434/644 atomic regions from SNP 130072 to 130672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,387 DEBUG Processing 407/705 atomic regions from SNP 121847 to 122447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,401 DEBUG Processing 407/667 atomic regions from SNP 121879 to 122479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,409 DEBUG Processing 189/548 atomic regions from SNP 56588 to 57189 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,458 DEBUG Processing 342/586 atomic regions from SNP 102319 to 102919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,479 DEBUG Processing 435/644 atomic regions from SNP 130372 to 130972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,619 DEBUG Processing 190/548 atomic regions from SNP 56889 to 57490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,627 DEBUG Processing 408/705 atomic regions from SNP 122147 to 122747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,632 DEBUG Processing 408/667 atomic regions from SNP 122179 to 122779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,649 DEBUG Processing 343/586 atomic regions from SNP 102619 to 103219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,706 DEBUG Processing 436/644 atomic regions from SNP 130672 to 131272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:07,834 DEBUG Processing 191/548 atomic regions from SNP 57190 to 57791 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:07,852 DEBUG Processing 344/586 atomic regions from SNP 102919 to 103519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:07,867 DEBUG Processing 409/667 atomic regions from SNP 122479 to 123079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:07,870 DEBUG Processing 409/705 atomic regions from SNP 122447 to 123047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:07,932 DEBUG Processing 437/644 atomic regions from SNP 130972 to 131572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,045 DEBUG Processing 192/548 atomic regions from SNP 57491 to 58092 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,048 DEBUG Processing 345/586 atomic regions from SNP 103219 to 103819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,101 DEBUG Processing 410/667 atomic regions from SNP 122779 to 123379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,113 DEBUG Processing 410/705 atomic regions from SNP 122747 to 123347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,136 DEBUG Processing 438/644 atomic regions from SNP 131272 to 131872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,243 DEBUG Processing 346/586 atomic regions from SNP 103519 to 104119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,255 DEBUG Processing 193/548 atomic regions from SNP 57792 to 58393 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,331 DEBUG Processing 411/667 atomic regions from SNP 123079 to 123679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,339 DEBUG Processing 439/644 atomic regions from SNP 131572 to 132172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,353 DEBUG Processing 411/705 atomic regions from SNP 123047 to 123647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,437 DEBUG Processing 347/586 atomic regions from SNP 103819 to 104419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,460 DEBUG Processing 194/548 atomic regions from SNP 58093 to 58694 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,557 DEBUG Processing 440/644 atomic regions from SNP 131872 to 132472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,557 DEBUG Processing 412/667 atomic regions from SNP 123379 to 123979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,589 DEBUG Processing 412/705 atomic regions from SNP 123347 to 123947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,631 DEBUG Processing 348/586 atomic regions from SNP 104119 to 104719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,680 DEBUG Processing 195/548 atomic regions from SNP 58394 to 58995 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:08,785 DEBUG Processing 441/644 atomic regions from SNP 132172 to 132772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:08,785 DEBUG Processing 413/667 atomic regions from SNP 123679 to 124279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:08,831 DEBUG Processing 413/705 atomic regions from SNP 123647 to 124247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:08,833 DEBUG Processing 349/586 atomic regions from SNP 104419 to 105019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:08,890 DEBUG Processing 196/548 atomic regions from SNP 58695 to 59296 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,002 DEBUG Processing 442/644 atomic regions from SNP 132472 to 133072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,014 DEBUG Processing 414/667 atomic regions from SNP 123979 to 124579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,037 DEBUG Processing 350/586 atomic regions from SNP 104719 to 105319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,069 DEBUG Processing 414/705 atomic regions from SNP 123947 to 124547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,101 DEBUG Processing 197/548 atomic regions from SNP 58996 to 59597 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,206 DEBUG Processing 443/644 atomic regions from SNP 132772 to 133372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,239 DEBUG Processing 351/586 atomic regions from SNP 105019 to 105619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,246 DEBUG Processing 415/667 atomic regions from SNP 124279 to 124879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,310 DEBUG Processing 415/705 atomic regions from SNP 124247 to 124847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,315 DEBUG Processing 198/548 atomic regions from SNP 59297 to 59898 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,418 DEBUG Processing 444/644 atomic regions from SNP 133072 to 133672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,434 DEBUG Processing 352/586 atomic regions from SNP 105319 to 105919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,473 DEBUG Processing 416/667 atomic regions from SNP 124579 to 125179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,526 DEBUG Processing 199/548 atomic regions from SNP 59598 to 60199 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,550 DEBUG Processing 416/705 atomic regions from SNP 124547 to 125147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,628 DEBUG Processing 445/644 atomic regions from SNP 133372 to 133972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,631 DEBUG Processing 353/586 atomic regions from SNP 105619 to 106219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,701 DEBUG Processing 417/667 atomic regions from SNP 124879 to 125479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,731 DEBUG Processing 200/548 atomic regions from SNP 59899 to 60500 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:09,807 DEBUG Processing 417/705 atomic regions from SNP 124847 to 125447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:09,824 DEBUG Processing 354/586 atomic regions from SNP 105919 to 106519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:09,843 DEBUG Processing 446/644 atomic regions from SNP 133672 to 134272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:09,925 DEBUG Processing 418/667 atomic regions from SNP 125179 to 125779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:09,936 DEBUG Processing 201/548 atomic regions from SNP 60200 to 60801 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,020 DEBUG Processing 355/586 atomic regions from SNP 106219 to 106819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,035 DEBUG Processing 418/705 atomic regions from SNP 125147 to 125747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,061 DEBUG Processing 447/644 atomic regions from SNP 133972 to 134572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,139 DEBUG Processing 202/548 atomic regions from SNP 60501 to 61102 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,148 DEBUG Processing 419/667 atomic regions from SNP 125479 to 126079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,217 DEBUG Processing 356/586 atomic regions from SNP 106519 to 107119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,261 DEBUG Processing 419/705 atomic regions from SNP 125447 to 126047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,269 DEBUG Processing 448/644 atomic regions from SNP 134272 to 134872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,340 DEBUG Processing 203/548 atomic regions from SNP 60802 to 61403 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,374 DEBUG Processing 420/667 atomic regions from SNP 125779 to 126379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,420 DEBUG Processing 357/586 atomic regions from SNP 106819 to 107419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,470 DEBUG Processing 449/644 atomic regions from SNP 134572 to 135172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,501 DEBUG Processing 420/705 atomic regions from SNP 125747 to 126347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,541 DEBUG Processing 204/548 atomic regions from SNP 61103 to 61704 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,592 DEBUG Processing 421/667 atomic regions from SNP 126079 to 126679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,617 DEBUG Processing 358/586 atomic regions from SNP 107119 to 107719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,674 DEBUG Processing 450/644 atomic regions from SNP 134872 to 135472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,744 DEBUG Processing 205/548 atomic regions from SNP 61404 to 62005 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,762 DEBUG Processing 421/705 atomic regions from SNP 126047 to 126647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:10,805 DEBUG Processing 359/586 atomic regions from SNP 107419 to 108019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:10,810 DEBUG Processing 422/667 atomic regions from SNP 126379 to 126979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:10,875 DEBUG Processing 451/644 atomic regions from SNP 135172 to 135772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:10,962 DEBUG Processing 206/548 atomic regions from SNP 61705 to 62306 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:10,996 DEBUG Processing 360/586 atomic regions from SNP 107719 to 108319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,029 DEBUG Processing 422/705 atomic regions from SNP 126347 to 126947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,050 DEBUG Processing 423/667 atomic regions from SNP 126679 to 127279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,085 DEBUG Processing 452/644 atomic regions from SNP 135472 to 136072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,187 DEBUG Processing 207/548 atomic regions from SNP 62006 to 62607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,187 DEBUG Processing 361/586 atomic regions from SNP 108019 to 108619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,273 DEBUG Processing 423/705 atomic regions from SNP 126647 to 127247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,289 DEBUG Processing 453/644 atomic regions from SNP 135772 to 136372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,306 DEBUG Processing 424/667 atomic regions from SNP 126979 to 127579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,388 DEBUG Processing 362/586 atomic regions from SNP 108319 to 108919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,421 DEBUG Processing 208/548 atomic regions from SNP 62307 to 62908 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,487 DEBUG Processing 454/644 atomic regions from SNP 136072 to 136672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,525 DEBUG Processing 424/705 atomic regions from SNP 126947 to 127547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,542 DEBUG Processing 425/667 atomic regions from SNP 127279 to 127879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,591 DEBUG Processing 363/586 atomic regions from SNP 108619 to 109219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,625 DEBUG Processing 209/548 atomic regions from SNP 62608 to 63209 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,685 DEBUG Processing 455/644 atomic regions from SNP 136372 to 136972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,764 DEBUG Processing 425/705 atomic regions from SNP 127247 to 127847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:11,779 DEBUG Processing 426/667 atomic regions from SNP 127579 to 128179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:11,793 DEBUG Processing 364/586 atomic regions from SNP 108919 to 109519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:11,842 DEBUG Processing 210/548 atomic regions from SNP 62909 to 63510 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:11,888 DEBUG Processing 456/644 atomic regions from SNP 136672 to 137272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:11,988 DEBUG Processing 365/586 atomic regions from SNP 109219 to 109819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,003 DEBUG Processing 426/705 atomic regions from SNP 127547 to 128147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,008 DEBUG Processing 427/667 atomic regions from SNP 127879 to 128479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,060 DEBUG Processing 211/548 atomic regions from SNP 63210 to 63811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,126 DEBUG Processing 457/644 atomic regions from SNP 136972 to 137572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,179 DEBUG Processing 366/586 atomic regions from SNP 109519 to 110119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,242 DEBUG Processing 428/667 atomic regions from SNP 128179 to 128779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,244 DEBUG Processing 427/705 atomic regions from SNP 127847 to 128447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,285 DEBUG Processing 212/548 atomic regions from SNP 63511 to 64112 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,368 DEBUG Processing 458/644 atomic regions from SNP 137272 to 137872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,375 DEBUG Processing 367/586 atomic regions from SNP 109819 to 110419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,484 DEBUG Processing 429/667 atomic regions from SNP 128479 to 129079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,498 DEBUG Processing 428/705 atomic regions from SNP 128147 to 128747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,509 DEBUG Processing 213/548 atomic regions from SNP 63812 to 64413 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,579 DEBUG Processing 368/586 atomic regions from SNP 110119 to 110719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,602 DEBUG Processing 459/644 atomic regions from SNP 137572 to 138172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,716 DEBUG Processing 430/667 atomic regions from SNP 128779 to 129379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,727 DEBUG Processing 214/548 atomic regions from SNP 64113 to 64714 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,743 DEBUG Processing 429/705 atomic regions from SNP 128447 to 129047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,785 DEBUG Processing 369/586 atomic regions from SNP 110419 to 111019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:12,817 DEBUG Processing 460/644 atomic regions from SNP 137872 to 138472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:12,946 DEBUG Processing 215/548 atomic regions from SNP 64414 to 65015 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:12,950 DEBUG Processing 431/667 atomic regions from SNP 129079 to 129679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:12,971 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:51:12,973 DEBUG chr17: Signal quantile: 0.991. signal threshold: 10. Best RMSEA: 0.017 2025-01-31 09:51:12,993 DEBUG Processing 430/705 atomic regions from SNP 128747 to 129347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:12,995 DEBUG Processing 370/586 atomic regions from SNP 110719 to 111319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,031 DEBUG Processing 461/644 atomic regions from SNP 138172 to 138772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,162 DEBUG Processing 216/548 atomic regions from SNP 64715 to 65316 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,185 DEBUG Processing 432/667 atomic regions from SNP 129379 to 129979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,200 DEBUG Processing 371/586 atomic regions from SNP 111019 to 111619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,238 DEBUG Processing 431/705 atomic regions from SNP 129047 to 129647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,243 DEBUG Processing 462/644 atomic regions from SNP 138472 to 139072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,375 DEBUG Processing 217/548 atomic regions from SNP 65016 to 65617 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,408 DEBUG Processing 372/586 atomic regions from SNP 111319 to 111919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,422 DEBUG Processing 433/667 atomic regions from SNP 129679 to 130279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,459 DEBUG Processing 463/644 atomic regions from SNP 138772 to 139372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,481 DEBUG Processing 432/705 atomic regions from SNP 129347 to 129947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,583 DEBUG Processing 218/548 atomic regions from SNP 65317 to 65918 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,606 DEBUG Processing 373/586 atomic regions from SNP 111619 to 112219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,657 DEBUG Processing 434/667 atomic regions from SNP 129979 to 130579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:13,672 DEBUG Processing 464/644 atomic regions from SNP 139072 to 139672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,746 DEBUG Processing 433/705 atomic regions from SNP 129647 to 130247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:13,796 DEBUG Processing 219/548 atomic regions from SNP 65618 to 66219 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:13,808 DEBUG Processing 374/586 atomic regions from SNP 111919 to 112519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:13,887 DEBUG Processing 465/644 atomic regions from SNP 139372 to 139972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:13,897 DEBUG Processing 435/667 atomic regions from SNP 130279 to 130879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,008 DEBUG Processing 375/586 atomic regions from SNP 112219 to 112819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,008 DEBUG Processing 220/548 atomic regions from SNP 65919 to 66520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,012 DEBUG Processing 434/705 atomic regions from SNP 129947 to 130547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,093 DEBUG Processing 466/644 atomic regions from SNP 139672 to 140272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,129 DEBUG Processing 436/667 atomic regions from SNP 130579 to 131179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,212 DEBUG Processing 376/586 atomic regions from SNP 112519 to 113119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,224 DEBUG Processing 221/548 atomic regions from SNP 66220 to 66821 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,258 DEBUG Processing 435/705 atomic regions from SNP 130247 to 130847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,293 DEBUG Processing 467/644 atomic regions from SNP 139972 to 140572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,359 DEBUG Processing 437/667 atomic regions from SNP 130879 to 131479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,418 DEBUG Processing 377/586 atomic regions from SNP 112819 to 113419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,439 DEBUG Processing 222/548 atomic regions from SNP 66521 to 67122 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,490 DEBUG Processing 468/644 atomic regions from SNP 140272 to 140872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,512 DEBUG Processing 436/705 atomic regions from SNP 130547 to 131147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,605 DEBUG Processing 438/667 atomic regions from SNP 131179 to 131779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,620 DEBUG Processing 378/586 atomic regions from SNP 113119 to 113719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,656 DEBUG Processing 223/548 atomic regions from SNP 66822 to 67423 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,693 DEBUG Processing 469/644 atomic regions from SNP 140572 to 141172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,708 DEBUG chr17 total SNP count: 156331 2025-01-31 09:51:14,708 DEBUG chr17 length: 94987271 2025-01-31 09:51:14,708 DEBUG ----------------------------------------- 2025-01-31 09:51:14,708 INFO Processing SNPs in chr17 2025-01-31 09:51:14,778 DEBUG Processing 437/705 atomic regions from SNP 130847 to 131447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:14,819 DEBUG Processing 379/586 atomic regions from SNP 113419 to 114019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:14,859 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 156331)] 2025-01-31 09:51:14,860 DEBUG Processing 439/667 atomic regions from SNP 131479 to 132079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:14,868 DEBUG Processing 224/548 atomic regions from SNP 67123 to 67724 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:14,892 DEBUG Processing 470/644 atomic regions from SNP 140872 to 141472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:14,964 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:15,011 DEBUG Processing 380/586 atomic regions from SNP 113719 to 114319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,043 DEBUG Processing 438/705 atomic regions from SNP 131147 to 131747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,082 DEBUG Processing 225/548 atomic regions from SNP 67424 to 68025 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,093 DEBUG Processing 440/667 atomic regions from SNP 131779 to 132379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,093 DEBUG Processing 471/644 atomic regions from SNP 141172 to 141772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,200 DEBUG Processing 381/586 atomic regions from SNP 114019 to 114619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,293 DEBUG Processing 439/705 atomic regions from SNP 131447 to 132047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,294 DEBUG Processing 472/644 atomic regions from SNP 141472 to 142072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,297 DEBUG Processing 226/548 atomic regions from SNP 67725 to 68326 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,328 DEBUG Processing 441/667 atomic regions from SNP 132079 to 132679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,388 DEBUG Processing 382/586 atomic regions from SNP 114319 to 114919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,492 DEBUG Processing 473/644 atomic regions from SNP 141772 to 142372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,512 DEBUG Processing 227/548 atomic regions from SNP 68026 to 68627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,537 DEBUG Processing 440/705 atomic regions from SNP 131747 to 132347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,564 DEBUG Processing 442/667 atomic regions from SNP 132379 to 132979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,576 DEBUG Processing 383/586 atomic regions from SNP 114619 to 115219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,688 DEBUG Processing 474/644 atomic regions from SNP 142072 to 142672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,723 DEBUG Processing 228/548 atomic regions from SNP 68327 to 68928 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,771 DEBUG Processing 384/586 atomic regions from SNP 114919 to 115519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:15,779 DEBUG Processing 441/705 atomic regions from SNP 132047 to 132647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:15,826 DEBUG Processing 443/667 atomic regions from SNP 132679 to 133279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:15,886 DEBUG Processing 475/644 atomic regions from SNP 142372 to 142972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:15,931 DEBUG Processing 229/548 atomic regions from SNP 68628 to 69229 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:15,968 DEBUG Processing 385/586 atomic regions from SNP 115219 to 115819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,016 DEBUG Processing 442/705 atomic regions from SNP 132347 to 132947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,081 DEBUG Processing 444/667 atomic regions from SNP 132979 to 133579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,083 DEBUG Processing 476/644 atomic regions from SNP 142672 to 143272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,140 DEBUG Processing 230/548 atomic regions from SNP 68929 to 69530 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,160 DEBUG Processing 386/586 atomic regions from SNP 115519 to 116119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,252 DEBUG Processing 443/705 atomic regions from SNP 132647 to 133247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,279 DEBUG Processing 477/644 atomic regions from SNP 142972 to 143572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,311 DEBUG Processing 445/667 atomic regions from SNP 133279 to 133879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,351 DEBUG Processing 231/548 atomic regions from SNP 69230 to 69831 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,353 DEBUG Processing 387/586 atomic regions from SNP 115819 to 116419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,475 DEBUG Processing 478/644 atomic regions from SNP 143272 to 143872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,486 DEBUG Processing 444/705 atomic regions from SNP 132947 to 133547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,540 DEBUG Processing 446/667 atomic regions from SNP 133579 to 134179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,547 DEBUG Processing 388/586 atomic regions from SNP 116119 to 116719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,565 DEBUG Processing 232/548 atomic regions from SNP 69531 to 70132 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,674 DEBUG Processing 479/644 atomic regions from SNP 143572 to 144172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,725 DEBUG Processing 445/705 atomic regions from SNP 133247 to 133847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,735 DEBUG Processing 389/586 atomic regions from SNP 116419 to 117019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,770 DEBUG Processing 447/667 atomic regions from SNP 133879 to 134479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:16,770 DEBUG Processing 233/548 atomic regions from SNP 69832 to 70433 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:16,872 DEBUG Processing 480/644 atomic regions from SNP 143872 to 144472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:16,930 DEBUG Processing 390/586 atomic regions from SNP 116719 to 117319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:16,967 DEBUG Processing 446/705 atomic regions from SNP 133547 to 134147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:16,981 DEBUG Processing 234/548 atomic regions from SNP 70133 to 70734 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,003 DEBUG Processing 448/667 atomic regions from SNP 134179 to 134779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,065 DEBUG Processing 481/644 atomic regions from SNP 144172 to 144772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,123 DEBUG Processing 391/586 atomic regions from SNP 117019 to 117619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,195 DEBUG Processing 235/548 atomic regions from SNP 70434 to 71035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,223 DEBUG Processing 447/705 atomic regions from SNP 133847 to 134447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,236 DEBUG Processing 449/667 atomic regions from SNP 134479 to 135079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,260 DEBUG Processing 482/644 atomic regions from SNP 144472 to 145072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,312 DEBUG Processing 392/586 atomic regions from SNP 117319 to 117919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,410 DEBUG Processing 236/548 atomic regions from SNP 70735 to 71336 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,454 DEBUG Processing 483/644 atomic regions from SNP 144772 to 145372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,469 DEBUG Processing 450/667 atomic regions from SNP 134779 to 135379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,475 DEBUG Processing 448/705 atomic regions from SNP 134147 to 134747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,499 DEBUG Processing 393/586 atomic regions from SNP 117619 to 118219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,616 DEBUG Processing 237/548 atomic regions from SNP 71036 to 71637 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,650 DEBUG Processing 484/644 atomic regions from SNP 145072 to 145672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,690 DEBUG Processing 394/586 atomic regions from SNP 117919 to 118519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,702 DEBUG Processing 451/667 atomic regions from SNP 135079 to 135679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,719 DEBUG Processing 449/705 atomic regions from SNP 134447 to 135047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:17,813 DEBUG Processing 238/548 atomic regions from SNP 71337 to 71938 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:17,841 DEBUG Processing 485/644 atomic regions from SNP 145372 to 145972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:17,882 DEBUG Processing 395/586 atomic regions from SNP 118219 to 118819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:17,937 DEBUG Processing 452/667 atomic regions from SNP 135379 to 135979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:17,967 DEBUG Processing 450/705 atomic regions from SNP 134747 to 135347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,015 DEBUG Processing 239/548 atomic regions from SNP 71638 to 72239 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,033 DEBUG Processing 486/644 atomic regions from SNP 145672 to 146272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,068 DEBUG Processing 396/586 atomic regions from SNP 118519 to 119119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,162 DEBUG Processing 453/667 atomic regions from SNP 135679 to 136279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,207 DEBUG Processing 451/705 atomic regions from SNP 135047 to 135647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,219 DEBUG Processing 240/548 atomic regions from SNP 71939 to 72540 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,230 DEBUG Processing 487/644 atomic regions from SNP 145972 to 146572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,256 DEBUG Processing 397/586 atomic regions from SNP 118819 to 119419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,387 DEBUG Processing 454/667 atomic regions from SNP 135979 to 136579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,433 DEBUG Processing 488/644 atomic regions from SNP 146272 to 146872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,435 DEBUG Processing 241/548 atomic regions from SNP 72240 to 72841 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,449 DEBUG Processing 452/705 atomic regions from SNP 135347 to 135947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,455 DEBUG Processing 398/586 atomic regions from SNP 119119 to 119719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,628 DEBUG Processing 455/667 atomic regions from SNP 136279 to 136879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,633 DEBUG Processing 489/644 atomic regions from SNP 146572 to 147172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,647 DEBUG Processing 242/548 atomic regions from SNP 72541 to 73142 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,660 DEBUG Processing 399/586 atomic regions from SNP 119419 to 120019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,688 DEBUG Processing 453/705 atomic regions from SNP 135647 to 136247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:18,830 DEBUG Processing 490/644 atomic regions from SNP 146872 to 147472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:18,857 DEBUG Processing 400/586 atomic regions from SNP 119719 to 120319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:18,859 DEBUG Processing 243/548 atomic regions from SNP 72842 to 73443 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:18,881 DEBUG Processing 456/667 atomic regions from SNP 136579 to 137179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:18,926 DEBUG Processing 454/705 atomic regions from SNP 135947 to 136547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,025 DEBUG Processing 491/644 atomic regions from SNP 147172 to 147772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,046 DEBUG Processing 401/586 atomic regions from SNP 120019 to 120619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,059 DEBUG Processing 244/548 atomic regions from SNP 73143 to 73744 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,104 DEBUG Processing 457/667 atomic regions from SNP 136879 to 137479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,165 DEBUG Processing 455/705 atomic regions from SNP 136247 to 136847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,226 DEBUG Processing 492/644 atomic regions from SNP 147472 to 148072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,240 DEBUG Processing 402/586 atomic regions from SNP 120319 to 120919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,260 DEBUG Processing 245/548 atomic regions from SNP 73444 to 74045 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,331 DEBUG Processing 458/667 atomic regions from SNP 137179 to 137779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,405 DEBUG Processing 456/705 atomic regions from SNP 136547 to 137147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,427 DEBUG Processing 493/644 atomic regions from SNP 147772 to 148372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,443 DEBUG Processing 403/586 atomic regions from SNP 120619 to 121219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,465 DEBUG Processing 246/548 atomic regions from SNP 73745 to 74346 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,551 DEBUG Processing 459/667 atomic regions from SNP 137479 to 138079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,627 DEBUG Processing 494/644 atomic regions from SNP 148072 to 148672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,638 DEBUG Processing 404/586 atomic regions from SNP 120919 to 121519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,643 DEBUG Processing 457/705 atomic regions from SNP 136847 to 137447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,675 DEBUG Processing 247/548 atomic regions from SNP 74046 to 74647 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,771 DEBUG Processing 460/667 atomic regions from SNP 137779 to 138379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:19,827 DEBUG Processing 495/644 atomic regions from SNP 148372 to 148972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:19,833 DEBUG Processing 405/586 atomic regions from SNP 121219 to 121819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:19,883 DEBUG Processing 458/705 atomic regions from SNP 137147 to 137747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:19,890 DEBUG Processing 248/548 atomic regions from SNP 74347 to 74948 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:19,993 DEBUG Processing 461/667 atomic regions from SNP 138079 to 138679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,021 DEBUG Processing 496/644 atomic regions from SNP 148672 to 149272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,024 DEBUG Processing 406/586 atomic regions from SNP 121519 to 122119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,101 DEBUG Processing 249/548 atomic regions from SNP 74648 to 75249 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,120 DEBUG Processing 459/705 atomic regions from SNP 137447 to 138047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,218 DEBUG Processing 407/586 atomic regions from SNP 121819 to 122419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,220 DEBUG Processing 497/644 atomic regions from SNP 148972 to 149572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,224 DEBUG Processing 462/667 atomic regions from SNP 138379 to 138979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,306 DEBUG Processing 250/548 atomic regions from SNP 74949 to 75550 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,357 DEBUG Processing 460/705 atomic regions from SNP 137747 to 138347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,418 DEBUG Processing 408/586 atomic regions from SNP 122119 to 122719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,425 DEBUG Processing 498/644 atomic regions from SNP 149272 to 149872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,459 DEBUG Processing 463/667 atomic regions from SNP 138679 to 139279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,508 DEBUG Processing 251/548 atomic regions from SNP 75250 to 75851 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,586 DEBUG Processing 461/705 atomic regions from SNP 138047 to 138647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,616 DEBUG Processing 409/586 atomic regions from SNP 122419 to 123019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,630 DEBUG Processing 499/644 atomic regions from SNP 149572 to 150172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,688 DEBUG Processing 464/667 atomic regions from SNP 138979 to 139579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:20,709 DEBUG Processing 252/548 atomic regions from SNP 75551 to 76152 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,810 DEBUG Processing 410/586 atomic regions from SNP 122719 to 123319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:20,813 DEBUG Processing 462/705 atomic regions from SNP 138347 to 138947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:20,831 DEBUG Processing 500/644 atomic regions from SNP 149872 to 150472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:20,919 DEBUG Processing 253/548 atomic regions from SNP 75852 to 76453 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:20,920 DEBUG Processing 465/667 atomic regions from SNP 139279 to 139879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,003 DEBUG Processing 411/586 atomic regions from SNP 123019 to 123619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,029 DEBUG Processing 501/644 atomic regions from SNP 150172 to 150772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,041 DEBUG Processing 463/705 atomic regions from SNP 138647 to 139247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,131 DEBUG Processing 254/548 atomic regions from SNP 76153 to 76754 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,156 DEBUG Processing 466/667 atomic regions from SNP 139579 to 140179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,199 DEBUG Processing 412/586 atomic regions from SNP 123319 to 123919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,227 DEBUG Processing 502/644 atomic regions from SNP 150472 to 151072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,265 DEBUG Processing 464/705 atomic regions from SNP 138947 to 139547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,341 DEBUG Processing 255/548 atomic regions from SNP 76454 to 77055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,388 DEBUG Processing 467/667 atomic regions from SNP 139879 to 140479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,396 DEBUG Processing 413/586 atomic regions from SNP 123619 to 124219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,428 DEBUG Processing 503/644 atomic regions from SNP 150772 to 151372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,493 DEBUG Processing 465/705 atomic regions from SNP 139247 to 139847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,546 DEBUG Processing 256/548 atomic regions from SNP 76755 to 77356 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,599 DEBUG Processing 414/586 atomic regions from SNP 123919 to 124519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,618 DEBUG Processing 468/667 atomic regions from SNP 140179 to 140779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,635 DEBUG Processing 504/644 atomic regions from SNP 151072 to 151672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,729 DEBUG Processing 466/705 atomic regions from SNP 139547 to 140147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:21,751 DEBUG Processing 257/548 atomic regions from SNP 77056 to 77657 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,800 DEBUG Processing 415/586 atomic regions from SNP 124219 to 124819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:21,840 DEBUG Processing 505/644 atomic regions from SNP 151372 to 151972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:21,847 DEBUG Processing 469/667 atomic regions from SNP 140479 to 141079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:21,957 DEBUG Processing 258/548 atomic regions from SNP 77357 to 77958 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:21,973 DEBUG Processing 467/705 atomic regions from SNP 139847 to 140447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,019 DEBUG Processing 416/586 atomic regions from SNP 124519 to 125119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,043 DEBUG Processing 506/644 atomic regions from SNP 151672 to 152272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,075 DEBUG Processing 470/667 atomic regions from SNP 140779 to 141379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,162 DEBUG Processing 259/548 atomic regions from SNP 77658 to 78259 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,204 DEBUG Processing 468/705 atomic regions from SNP 140147 to 140747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,236 DEBUG Processing 417/586 atomic regions from SNP 124819 to 125419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,245 DEBUG Processing 507/644 atomic regions from SNP 151972 to 152572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,300 DEBUG Processing 471/667 atomic regions from SNP 141079 to 141679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,367 DEBUG Processing 260/548 atomic regions from SNP 77959 to 78560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,439 DEBUG Processing 469/705 atomic regions from SNP 140447 to 141047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,446 DEBUG Processing 508/644 atomic regions from SNP 152272 to 152872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,460 DEBUG Processing 418/586 atomic regions from SNP 125119 to 125719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,529 DEBUG Processing 472/667 atomic regions from SNP 141379 to 141979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,575 DEBUG Processing 261/548 atomic regions from SNP 78260 to 78861 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,644 DEBUG Processing 509/644 atomic regions from SNP 152572 to 153172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,677 DEBUG Processing 470/705 atomic regions from SNP 140747 to 141347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,686 DEBUG Processing 419/586 atomic regions from SNP 125419 to 126019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,760 DEBUG Processing 473/667 atomic regions from SNP 141679 to 142279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:22,779 DEBUG Processing 262/548 atomic regions from SNP 78561 to 79162 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,835 DEBUG Processing 510/644 atomic regions from SNP 152872 to 153472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:22,901 DEBUG Processing 420/586 atomic regions from SNP 125719 to 126319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:22,908 DEBUG Processing 471/705 atomic regions from SNP 141047 to 141647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:22,989 DEBUG Processing 263/548 atomic regions from SNP 78862 to 79463 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:22,992 DEBUG Processing 474/667 atomic regions from SNP 141979 to 142579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,032 DEBUG Processing 511/644 atomic regions from SNP 153172 to 153772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,120 DEBUG Processing 421/586 atomic regions from SNP 126019 to 126619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,134 DEBUG Processing 472/705 atomic regions from SNP 141347 to 141947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,201 DEBUG Processing 264/548 atomic regions from SNP 79163 to 79764 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,225 DEBUG Processing 475/667 atomic regions from SNP 142279 to 142879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,235 DEBUG Processing 512/644 atomic regions from SNP 153472 to 154072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,341 DEBUG Processing 422/586 atomic regions from SNP 126319 to 126919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,360 DEBUG Processing 473/705 atomic regions from SNP 141647 to 142247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,413 DEBUG Processing 265/548 atomic regions from SNP 79464 to 80065 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,443 DEBUG Processing 513/644 atomic regions from SNP 153772 to 154372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,459 DEBUG Processing 476/667 atomic regions from SNP 142579 to 143179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,546 DEBUG Processing 423/586 atomic regions from SNP 126619 to 127219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,586 DEBUG Processing 474/705 atomic regions from SNP 141947 to 142547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,622 DEBUG Processing 266/548 atomic regions from SNP 79765 to 80366 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,649 DEBUG Processing 514/644 atomic regions from SNP 154072 to 154672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,692 DEBUG Processing 477/667 atomic regions from SNP 142879 to 143479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,729 DEBUG Processing 424/586 atomic regions from SNP 126919 to 127519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:23,819 DEBUG Processing 475/705 atomic regions from SNP 142247 to 142847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,828 DEBUG Processing 267/548 atomic regions from SNP 80066 to 80667 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:23,851 DEBUG Processing 515/644 atomic regions from SNP 154372 to 154972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:23,921 DEBUG Processing 478/667 atomic regions from SNP 143179 to 143779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:23,936 DEBUG Processing 425/586 atomic regions from SNP 127219 to 127819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,034 DEBUG Processing 268/548 atomic regions from SNP 80367 to 80968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,050 DEBUG Processing 516/644 atomic regions from SNP 154672 to 155272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,051 DEBUG Processing 476/705 atomic regions from SNP 142547 to 143147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,135 DEBUG Processing 426/586 atomic regions from SNP 127519 to 128119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,152 DEBUG Processing 479/667 atomic regions from SNP 143479 to 144079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,243 DEBUG Processing 269/548 atomic regions from SNP 80668 to 81269 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,248 DEBUG Processing 517/644 atomic regions from SNP 154972 to 155572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,286 DEBUG Processing 477/705 atomic regions from SNP 142847 to 143447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,335 DEBUG Processing 427/586 atomic regions from SNP 127819 to 128419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,376 DEBUG Processing 480/667 atomic regions from SNP 143779 to 144379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,441 DEBUG Processing 518/644 atomic regions from SNP 155272 to 155872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,451 DEBUG Processing 270/548 atomic regions from SNP 80969 to 81570 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,534 DEBUG Processing 478/705 atomic regions from SNP 143147 to 143747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,554 DEBUG Processing 428/586 atomic regions from SNP 128119 to 128719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,599 DEBUG Processing 481/667 atomic regions from SNP 144079 to 144679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,637 DEBUG Processing 519/644 atomic regions from SNP 155572 to 156172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,661 DEBUG Processing 271/548 atomic regions from SNP 81270 to 81871 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,756 DEBUG Processing 429/586 atomic regions from SNP 128419 to 129019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:24,792 DEBUG Processing 479/705 atomic regions from SNP 143447 to 144047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,824 DEBUG Processing 482/667 atomic regions from SNP 144379 to 144979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:24,836 DEBUG Processing 520/644 atomic regions from SNP 155872 to 156472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:24,868 DEBUG Processing 272/548 atomic regions from SNP 81571 to 82172 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:24,967 DEBUG Processing 430/586 atomic regions from SNP 128719 to 129319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,028 DEBUG Processing 480/705 atomic regions from SNP 143747 to 144347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,037 DEBUG Processing 521/644 atomic regions from SNP 156172 to 156772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,051 DEBUG Processing 483/667 atomic regions from SNP 144679 to 145279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,072 DEBUG Processing 273/548 atomic regions from SNP 81872 to 82473 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,179 DEBUG Processing 431/586 atomic regions from SNP 129019 to 129619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,236 DEBUG Processing 522/644 atomic regions from SNP 156472 to 157072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,270 DEBUG Processing 481/705 atomic regions from SNP 144047 to 144647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,278 DEBUG Processing 484/667 atomic regions from SNP 144979 to 145579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,287 DEBUG Processing 274/548 atomic regions from SNP 82173 to 82774 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,377 DEBUG Processing 432/586 atomic regions from SNP 129319 to 129919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,431 DEBUG Processing 523/644 atomic regions from SNP 156772 to 157372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,504 DEBUG Processing 485/667 atomic regions from SNP 145279 to 145879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,507 DEBUG Processing 482/705 atomic regions from SNP 144347 to 144947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,520 DEBUG Processing 275/548 atomic regions from SNP 82474 to 83075 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,566 DEBUG Processing 433/586 atomic regions from SNP 129619 to 130219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,629 DEBUG Processing 524/644 atomic regions from SNP 157072 to 157672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,732 DEBUG Processing 276/548 atomic regions from SNP 82775 to 83376 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,736 DEBUG Processing 486/667 atomic regions from SNP 145579 to 146179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,747 DEBUG Processing 483/705 atomic regions from SNP 144647 to 145247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,779 DEBUG Processing 434/586 atomic regions from SNP 129919 to 130519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:25,844 DEBUG Processing 525/644 atomic regions from SNP 157372 to 157972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:25,941 DEBUG Processing 277/548 atomic regions from SNP 83076 to 83677 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:25,965 DEBUG Processing 487/667 atomic regions from SNP 145879 to 146479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:25,982 DEBUG Processing 484/705 atomic regions from SNP 144947 to 145547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,008 DEBUG Processing 435/586 atomic regions from SNP 130219 to 130819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,036 DEBUG Processing 526/644 atomic regions from SNP 157672 to 158272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,147 DEBUG Processing 278/548 atomic regions from SNP 83377 to 83978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,192 DEBUG Processing 488/667 atomic regions from SNP 146179 to 146779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,222 DEBUG Processing 436/586 atomic regions from SNP 130519 to 131119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,232 DEBUG Processing 527/644 atomic regions from SNP 157972 to 158572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,232 DEBUG Processing 485/705 atomic regions from SNP 145247 to 145847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,350 DEBUG Processing 279/548 atomic regions from SNP 83678 to 84278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,416 DEBUG Processing 489/667 atomic regions from SNP 146479 to 147079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,432 DEBUG Processing 528/644 atomic regions from SNP 158272 to 158872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,443 DEBUG Processing 437/586 atomic regions from SNP 130819 to 131419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,470 DEBUG Processing 486/705 atomic regions from SNP 145547 to 146147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,561 DEBUG Processing 280/548 atomic regions from SNP 83978 to 84578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,634 DEBUG Processing 529/644 atomic regions from SNP 158572 to 159172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,639 DEBUG Processing 490/667 atomic regions from SNP 146779 to 147379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,659 DEBUG Processing 438/586 atomic regions from SNP 131119 to 131719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,703 DEBUG Processing 487/705 atomic regions from SNP 145847 to 146447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,773 DEBUG Processing 281/548 atomic regions from SNP 84278 to 84878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:26,853 DEBUG Processing 530/644 atomic regions from SNP 158872 to 159472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:26,862 DEBUG Processing 491/667 atomic regions from SNP 147079 to 147679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:26,873 DEBUG Processing 439/586 atomic regions from SNP 131419 to 132019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:26,933 DEBUG Processing 488/705 atomic regions from SNP 146147 to 146747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,983 DEBUG Processing 282/548 atomic regions from SNP 84578 to 85178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,049 DEBUG Processing 531/644 atomic regions from SNP 159172 to 159772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,083 DEBUG Processing 440/586 atomic regions from SNP 131719 to 132319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,089 DEBUG Processing 492/667 atomic regions from SNP 147379 to 147979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,164 DEBUG Processing 489/705 atomic regions from SNP 146447 to 147047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,193 DEBUG Processing 283/548 atomic regions from SNP 84878 to 85478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,245 DEBUG Processing 532/644 atomic regions from SNP 159472 to 160072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,286 DEBUG Processing 441/586 atomic regions from SNP 132019 to 132619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,323 DEBUG Processing 493/667 atomic regions from SNP 147679 to 148279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,404 DEBUG Processing 284/548 atomic regions from SNP 85178 to 85778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,405 DEBUG Processing 490/705 atomic regions from SNP 146747 to 147347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,481 DEBUG Processing 533/644 atomic regions from SNP 159772 to 160372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,509 DEBUG Processing 442/586 atomic regions from SNP 132319 to 132919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,563 DEBUG Processing 494/667 atomic regions from SNP 147979 to 148579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,613 DEBUG Processing 285/548 atomic regions from SNP 85478 to 86078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,643 DEBUG Processing 491/705 atomic regions from SNP 147047 to 147647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,689 DEBUG Processing 534/644 atomic regions from SNP 160072 to 160672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,731 DEBUG Processing 443/586 atomic regions from SNP 132619 to 133219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:27,806 DEBUG Processing 495/667 atomic regions from SNP 148279 to 148879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:27,827 DEBUG Processing 286/548 atomic regions from SNP 85778 to 86378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:27,881 DEBUG Processing 492/705 atomic regions from SNP 147347 to 147947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,899 DEBUG Processing 535/644 atomic regions from SNP 160372 to 160972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:27,923 DEBUG Processing 444/586 atomic regions from SNP 132919 to 133519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,045 DEBUG Processing 287/548 atomic regions from SNP 86078 to 86678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,052 DEBUG Processing 496/667 atomic regions from SNP 148579 to 149179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,101 DEBUG Processing 536/644 atomic regions from SNP 160672 to 161272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,124 DEBUG Processing 493/705 atomic regions from SNP 147647 to 148247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,126 DEBUG Processing 445/586 atomic regions from SNP 133219 to 133819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,266 DEBUG Processing 288/548 atomic regions from SNP 86378 to 86978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,290 DEBUG Processing 497/667 atomic regions from SNP 148879 to 149479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,301 DEBUG Processing 537/644 atomic regions from SNP 160972 to 161572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,348 DEBUG Processing 446/586 atomic regions from SNP 133519 to 134119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,360 DEBUG Processing 494/705 atomic regions from SNP 147947 to 148547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,483 DEBUG Processing 289/548 atomic regions from SNP 86678 to 87278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,504 DEBUG Processing 538/644 atomic regions from SNP 161272 to 161872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,531 DEBUG Processing 498/667 atomic regions from SNP 149179 to 149779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,545 DEBUG Processing 447/586 atomic regions from SNP 133819 to 134419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,611 DEBUG Processing 495/705 atomic regions from SNP 148247 to 148847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,694 DEBUG Processing 290/548 atomic regions from SNP 86978 to 87578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,705 DEBUG Processing 539/644 atomic regions from SNP 161572 to 162172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,740 DEBUG Processing 448/586 atomic regions from SNP 134119 to 134719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,763 DEBUG Processing 499/667 atomic regions from SNP 149479 to 150079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:28,855 DEBUG Processing 496/705 atomic regions from SNP 148547 to 149147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,906 DEBUG Processing 540/644 atomic regions from SNP 161872 to 162472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:28,908 DEBUG Processing 291/548 atomic regions from SNP 87278 to 87878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:28,938 DEBUG Processing 449/586 atomic regions from SNP 134419 to 135019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:28,995 DEBUG Processing 500/667 atomic regions from SNP 149779 to 150379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,102 DEBUG Processing 541/644 atomic regions from SNP 162172 to 162772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,114 DEBUG Processing 497/705 atomic regions from SNP 148847 to 149447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,117 DEBUG Processing 292/548 atomic regions from SNP 87578 to 88178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,138 DEBUG Processing 450/586 atomic regions from SNP 134719 to 135319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,225 DEBUG Processing 501/667 atomic regions from SNP 150079 to 150679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,314 DEBUG Processing 542/644 atomic regions from SNP 162472 to 163072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,329 DEBUG Processing 293/548 atomic regions from SNP 87878 to 88478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,354 DEBUG Processing 498/705 atomic regions from SNP 149147 to 149747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,366 DEBUG Processing 451/586 atomic regions from SNP 135019 to 135619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,458 DEBUG Processing 502/667 atomic regions from SNP 150379 to 150979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,541 DEBUG Processing 294/548 atomic regions from SNP 88178 to 88778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,542 DEBUG Processing 543/644 atomic regions from SNP 162772 to 163372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,578 DEBUG Processing 452/586 atomic regions from SNP 135319 to 135919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,608 DEBUG Processing 499/705 atomic regions from SNP 149447 to 150047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,693 DEBUG Processing 503/667 atomic regions from SNP 150679 to 151279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,749 DEBUG Processing 295/548 atomic regions from SNP 88478 to 89078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,750 DEBUG Processing 544/644 atomic regions from SNP 163072 to 163672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:29,812 DEBUG Processing 453/586 atomic regions from SNP 135619 to 136219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:29,848 DEBUG Processing 500/705 atomic regions from SNP 149747 to 150347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,928 DEBUG Processing 504/667 atomic regions from SNP 150979 to 151579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:29,959 DEBUG Processing 296/548 atomic regions from SNP 88778 to 89378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:29,980 DEBUG Processing 545/644 atomic regions from SNP 163372 to 163972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,033 DEBUG Processing 454/586 atomic regions from SNP 135919 to 136519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,079 DEBUG Processing 501/705 atomic regions from SNP 150047 to 150647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,175 DEBUG Processing 297/548 atomic regions from SNP 89078 to 89678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,179 DEBUG Processing 505/667 atomic regions from SNP 151279 to 151879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,184 DEBUG Processing 546/644 atomic regions from SNP 163672 to 164272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,250 DEBUG Processing 455/586 atomic regions from SNP 136219 to 136819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,312 DEBUG Processing 502/705 atomic regions from SNP 150347 to 150947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,392 DEBUG Processing 547/644 atomic regions from SNP 163972 to 164572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,399 DEBUG Processing 298/548 atomic regions from SNP 89378 to 89978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,435 DEBUG Processing 506/667 atomic regions from SNP 151579 to 152179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,473 DEBUG Processing 456/586 atomic regions from SNP 136519 to 137119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,543 DEBUG Processing 503/705 atomic regions from SNP 150647 to 151247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,593 DEBUG Processing 548/644 atomic regions from SNP 164272 to 164872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,609 DEBUG Processing 299/548 atomic regions from SNP 89678 to 90278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,670 DEBUG Processing 507/667 atomic regions from SNP 151879 to 152479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:30,681 DEBUG Processing 457/586 atomic regions from SNP 136819 to 137419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,779 DEBUG Processing 504/705 atomic regions from SNP 150947 to 151547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,802 DEBUG Processing 549/644 atomic regions from SNP 164572 to 165172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:30,816 DEBUG Processing 300/548 atomic regions from SNP 89978 to 90578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:30,874 DEBUG Processing 458/586 atomic regions from SNP 137119 to 137719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:30,894 DEBUG Processing 508/667 atomic regions from SNP 152179 to 152779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,002 DEBUG Processing 550/644 atomic regions from SNP 164872 to 165472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,009 DEBUG Processing 505/705 atomic regions from SNP 151247 to 151847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,021 DEBUG Processing 301/548 atomic regions from SNP 90278 to 90878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,073 DEBUG Processing 459/586 atomic regions from SNP 137419 to 138019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,122 DEBUG Processing 509/667 atomic regions from SNP 152479 to 153079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,205 DEBUG Processing 551/644 atomic regions from SNP 165172 to 165772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,236 DEBUG Processing 302/548 atomic regions from SNP 90578 to 91178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,249 DEBUG Processing 506/705 atomic regions from SNP 151547 to 152147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,267 DEBUG Processing 460/586 atomic regions from SNP 137719 to 138319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,356 DEBUG Processing 510/667 atomic regions from SNP 152779 to 153379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,412 DEBUG Processing 552/644 atomic regions from SNP 165472 to 166072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,443 DEBUG Processing 303/548 atomic regions from SNP 90878 to 91478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,478 DEBUG Processing 461/586 atomic regions from SNP 138019 to 138619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,485 DEBUG Processing 507/705 atomic regions from SNP 151847 to 152447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,588 DEBUG Processing 511/667 atomic regions from SNP 153079 to 153679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,614 DEBUG Processing 553/644 atomic regions from SNP 165772 to 166372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,648 DEBUG Processing 304/548 atomic regions from SNP 91178 to 91778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,670 DEBUG Processing 462/586 atomic regions from SNP 138319 to 138919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,716 DEBUG Processing 508/705 atomic regions from SNP 152147 to 152747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,816 DEBUG Processing 554/644 atomic regions from SNP 166072 to 166672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:31,821 DEBUG Processing 512/667 atomic regions from SNP 153379 to 153979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:31,860 DEBUG Processing 305/548 atomic regions from SNP 91478 to 92078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:31,886 DEBUG Processing 463/586 atomic regions from SNP 138619 to 139219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:31,941 DEBUG Processing 509/705 atomic regions from SNP 152447 to 153047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,011 DEBUG Processing 555/644 atomic regions from SNP 166372 to 166972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,049 DEBUG Processing 513/667 atomic regions from SNP 153679 to 154279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,080 DEBUG Processing 306/548 atomic regions from SNP 91778 to 92378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,092 DEBUG Processing 464/586 atomic regions from SNP 138919 to 139519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,183 DEBUG Processing 510/705 atomic regions from SNP 152747 to 153347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,210 DEBUG Processing 556/644 atomic regions from SNP 166672 to 167272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,287 DEBUG Processing 514/667 atomic regions from SNP 153979 to 154579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,298 DEBUG Processing 465/586 atomic regions from SNP 139219 to 139819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,326 DEBUG Processing 307/548 atomic regions from SNP 92078 to 92678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,424 DEBUG Processing 557/644 atomic regions from SNP 166972 to 167572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,447 DEBUG Processing 511/705 atomic regions from SNP 153047 to 153647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,512 DEBUG Processing 466/586 atomic regions from SNP 139519 to 140119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,541 DEBUG Processing 515/667 atomic regions from SNP 154279 to 154879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,596 DEBUG Processing 308/548 atomic regions from SNP 92378 to 92978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,674 DEBUG Processing 558/644 atomic regions from SNP 167272 to 167872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,716 DEBUG Processing 512/705 atomic regions from SNP 153347 to 153947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,728 DEBUG Processing 467/586 atomic regions from SNP 139819 to 140419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,801 DEBUG Processing 516/667 atomic regions from SNP 154579 to 155179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:32,837 DEBUG Processing 309/548 atomic regions from SNP 92678 to 93278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:32,903 DEBUG Processing 559/644 atomic regions from SNP 167572 to 168172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:32,950 DEBUG Processing 468/586 atomic regions from SNP 140119 to 140719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:32,994 DEBUG Processing 513/705 atomic regions from SNP 153647 to 154247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,069 DEBUG Processing 517/667 atomic regions from SNP 154879 to 155479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,078 DEBUG Processing 310/548 atomic regions from SNP 92978 to 93578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,125 DEBUG Processing 560/644 atomic regions from SNP 167872 to 168472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,160 DEBUG Processing 469/586 atomic regions from SNP 140419 to 141019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,259 DEBUG Processing 514/705 atomic regions from SNP 153947 to 154547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,318 DEBUG Processing 311/548 atomic regions from SNP 93278 to 93878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,333 DEBUG Processing 518/667 atomic regions from SNP 155179 to 155779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,352 DEBUG Processing 561/644 atomic regions from SNP 168172 to 168772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,377 DEBUG Processing 470/586 atomic regions from SNP 140719 to 141319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,521 DEBUG Processing 515/705 atomic regions from SNP 154247 to 154847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,555 DEBUG Processing 312/548 atomic regions from SNP 93578 to 94178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,578 DEBUG Processing 562/644 atomic regions from SNP 168472 to 169072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,590 DEBUG Processing 519/667 atomic regions from SNP 155479 to 156079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,601 DEBUG Processing 471/586 atomic regions from SNP 141019 to 141619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,776 DEBUG Processing 516/705 atomic regions from SNP 154547 to 155147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,784 DEBUG Processing 313/548 atomic regions from SNP 93878 to 94478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:33,794 DEBUG Processing 563/644 atomic regions from SNP 168772 to 169372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:33,827 DEBUG Processing 472/586 atomic regions from SNP 141319 to 141919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:33,844 DEBUG Processing 520/667 atomic regions from SNP 155779 to 156379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:33,984 DEBUG Segmenting atomic regions: 2025-01-31 09:51:34,004 DEBUG Processing 314/548 atomic regions from SNP 94178 to 94778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,013 DEBUG Processing 564/644 atomic regions from SNP 169072 to 169672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,028 DEBUG Processing 517/705 atomic regions from SNP 154847 to 155447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,032 DEBUG Processing 473/586 atomic regions from SNP 141619 to 142219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,053 DEBUG Processing 1/520 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:34,083 DEBUG Processing 521/667 atomic regions from SNP 156079 to 156679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,219 DEBUG Processing 315/548 atomic regions from SNP 94478 to 95078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,220 DEBUG Processing 565/644 atomic regions from SNP 169372 to 169972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,237 DEBUG Processing 474/586 atomic regions from SNP 141919 to 142519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,249 DEBUG Processing 2/520 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:34,269 DEBUG Processing 518/705 atomic regions from SNP 155147 to 155747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,307 DEBUG Processing 522/667 atomic regions from SNP 156379 to 156979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,422 DEBUG Processing 566/644 atomic regions from SNP 169672 to 170272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,433 DEBUG Processing 316/548 atomic regions from SNP 94778 to 95378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,435 DEBUG Processing 475/586 atomic regions from SNP 142219 to 142819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,441 DEBUG Processing 3/520 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:34,508 DEBUG Processing 519/705 atomic regions from SNP 155447 to 156047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,530 DEBUG Processing 523/667 atomic regions from SNP 156679 to 157279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,618 DEBUG Processing 567/644 atomic regions from SNP 169972 to 170572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,628 DEBUG Processing 4/520 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:34,629 DEBUG Processing 476/586 atomic regions from SNP 142519 to 143119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,646 DEBUG Processing 317/548 atomic regions from SNP 95078 to 95678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,751 DEBUG Processing 520/705 atomic regions from SNP 155747 to 156347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,781 DEBUG Processing 524/667 atomic regions from SNP 156979 to 157579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:34,811 DEBUG Processing 5/520 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:34,813 DEBUG Processing 568/644 atomic regions from SNP 170272 to 170872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:34,822 DEBUG Processing 477/586 atomic regions from SNP 142819 to 143419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:34,852 DEBUG Processing 318/548 atomic regions from SNP 95378 to 95978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:34,995 DEBUG Processing 521/705 atomic regions from SNP 156047 to 156647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,998 DEBUG Processing 6/520 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:35,013 DEBUG Processing 569/644 atomic regions from SNP 170572 to 171172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,014 DEBUG Processing 525/667 atomic regions from SNP 157279 to 157879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,016 DEBUG Processing 478/586 atomic regions from SNP 143119 to 143719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,058 DEBUG Processing 319/548 atomic regions from SNP 95678 to 96278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,187 DEBUG Processing 7/520 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:35,214 DEBUG Processing 479/586 atomic regions from SNP 143419 to 144019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,216 DEBUG Processing 570/644 atomic regions from SNP 170872 to 171472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,240 DEBUG Processing 522/705 atomic regions from SNP 156347 to 156947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,248 DEBUG Processing 526/667 atomic regions from SNP 157579 to 158179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,270 DEBUG Processing 320/548 atomic regions from SNP 95978 to 96578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,378 DEBUG Processing 8/520 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:35,417 DEBUG Processing 480/586 atomic regions from SNP 143719 to 144319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,422 DEBUG Processing 571/644 atomic regions from SNP 171172 to 171772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,480 DEBUG Processing 527/667 atomic regions from SNP 157879 to 158479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,484 DEBUG Processing 523/705 atomic regions from SNP 156647 to 157247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,487 DEBUG Processing 321/548 atomic regions from SNP 96278 to 96878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,566 DEBUG Processing 9/520 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:35,617 DEBUG Processing 481/586 atomic regions from SNP 144019 to 144619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,628 DEBUG Processing 572/644 atomic regions from SNP 171472 to 172072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,724 DEBUG Processing 528/667 atomic regions from SNP 158179 to 158779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,731 DEBUG Processing 322/548 atomic regions from SNP 96578 to 97178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,738 DEBUG Processing 524/705 atomic regions from SNP 156947 to 157547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,754 DEBUG Processing 10/520 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:35,813 DEBUG Processing 482/586 atomic regions from SNP 144319 to 144919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:35,829 DEBUG Processing 573/644 atomic regions from SNP 171772 to 172372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:35,944 DEBUG Processing 11/520 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:35,958 DEBUG Processing 323/548 atomic regions from SNP 96878 to 97478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:35,967 DEBUG Processing 529/667 atomic regions from SNP 158479 to 159079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:35,985 DEBUG Processing 525/705 atomic regions from SNP 157247 to 157847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,006 DEBUG Processing 483/586 atomic regions from SNP 144619 to 145219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,026 DEBUG Processing 574/644 atomic regions from SNP 172072 to 172672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,138 DEBUG Processing 12/520 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:36,188 DEBUG Processing 324/548 atomic regions from SNP 97178 to 97778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,208 DEBUG Processing 484/586 atomic regions from SNP 144919 to 145519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,217 DEBUG Processing 530/667 atomic regions from SNP 158779 to 159379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,231 DEBUG Processing 575/644 atomic regions from SNP 172372 to 172972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,239 DEBUG Processing 526/705 atomic regions from SNP 157547 to 158147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,338 DEBUG Processing 13/520 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:36,420 DEBUG Processing 325/548 atomic regions from SNP 97478 to 98078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,422 DEBUG Processing 485/586 atomic regions from SNP 145219 to 145819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,449 DEBUG Processing 576/644 atomic regions from SNP 172672 to 173272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,469 DEBUG Processing 531/667 atomic regions from SNP 159079 to 159679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,496 DEBUG Processing 527/705 atomic regions from SNP 157847 to 158447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,536 DEBUG Processing 14/520 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:36,632 DEBUG Processing 486/586 atomic regions from SNP 145519 to 146119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,647 DEBUG Processing 326/548 atomic regions from SNP 97778 to 98378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,670 DEBUG Processing 577/644 atomic regions from SNP 172972 to 173572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,732 DEBUG Processing 532/667 atomic regions from SNP 159379 to 159979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:36,776 DEBUG Processing 15/520 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:36,776 DEBUG Processing 528/705 atomic regions from SNP 158147 to 158747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,868 DEBUG Processing 487/586 atomic regions from SNP 145819 to 146419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:36,875 DEBUG Processing 327/548 atomic regions from SNP 98078 to 98678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:36,884 DEBUG Processing 578/644 atomic regions from SNP 173272 to 173872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:36,964 DEBUG Processing 16/520 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:36,995 DEBUG Processing 533/667 atomic regions from SNP 159679 to 160279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,026 DEBUG Processing 529/705 atomic regions from SNP 158447 to 159047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,073 DEBUG Processing 488/586 atomic regions from SNP 146119 to 146719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,093 DEBUG Processing 579/644 atomic regions from SNP 173572 to 174172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,098 DEBUG Processing 328/548 atomic regions from SNP 98378 to 98978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,151 DEBUG Processing 17/520 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:37,256 DEBUG Processing 534/667 atomic regions from SNP 159979 to 160579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,273 DEBUG Processing 530/705 atomic regions from SNP 158747 to 159347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,275 DEBUG Processing 489/586 atomic regions from SNP 146419 to 147019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,301 DEBUG Processing 580/644 atomic regions from SNP 173872 to 174472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,320 DEBUG Processing 329/548 atomic regions from SNP 98678 to 99278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,344 DEBUG Processing 18/520 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:37,486 DEBUG Processing 490/586 atomic regions from SNP 146719 to 147319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,514 DEBUG Processing 535/667 atomic regions from SNP 160279 to 160879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,522 DEBUG Processing 581/644 atomic regions from SNP 174172 to 174772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,535 DEBUG Processing 531/705 atomic regions from SNP 159047 to 159647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,548 DEBUG Processing 330/548 atomic regions from SNP 98978 to 99578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,555 DEBUG Processing 19/520 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:37,694 DEBUG Processing 491/586 atomic regions from SNP 147019 to 147619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,743 DEBUG Processing 582/644 atomic regions from SNP 174472 to 175072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,766 DEBUG Processing 20/520 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:37,768 DEBUG Processing 536/667 atomic regions from SNP 160579 to 161179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:37,777 DEBUG Processing 331/548 atomic regions from SNP 99278 to 99878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:37,795 DEBUG Processing 532/705 atomic regions from SNP 159347 to 159947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,890 DEBUG Processing 492/586 atomic regions from SNP 147319 to 147919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:37,955 DEBUG Processing 583/644 atomic regions from SNP 174772 to 175372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:37,978 DEBUG Processing 21/520 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:38,010 DEBUG Processing 332/548 atomic regions from SNP 99578 to 100178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,020 DEBUG Processing 537/667 atomic regions from SNP 160879 to 161479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,054 DEBUG Processing 533/705 atomic regions from SNP 159647 to 160247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,096 DEBUG Processing 493/586 atomic regions from SNP 147619 to 148219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,158 DEBUG Processing 584/644 atomic regions from SNP 175072 to 175672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,174 DEBUG Processing 22/520 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:38,239 DEBUG Processing 333/548 atomic regions from SNP 99878 to 100478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,272 DEBUG Processing 538/667 atomic regions from SNP 161179 to 161779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,313 DEBUG Processing 534/705 atomic regions from SNP 159947 to 160547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,315 DEBUG Processing 494/586 atomic regions from SNP 147919 to 148519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,365 DEBUG Processing 585/644 atomic regions from SNP 175372 to 175972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,365 DEBUG Processing 23/520 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:38,456 DEBUG Processing 334/548 atomic regions from SNP 100178 to 100778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,531 DEBUG Processing 495/586 atomic regions from SNP 148219 to 148819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,532 DEBUG Processing 539/667 atomic regions from SNP 161479 to 162079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,572 DEBUG Processing 24/520 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:38,584 DEBUG Processing 586/644 atomic regions from SNP 175672 to 176272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,584 DEBUG Processing 535/705 atomic regions from SNP 160247 to 160847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,679 DEBUG Processing 335/548 atomic regions from SNP 100478 to 101078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,758 DEBUG Processing 496/586 atomic regions from SNP 148519 to 149119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:38,778 DEBUG Processing 25/520 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:38,799 DEBUG Processing 587/644 atomic regions from SNP 175972 to 176572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:38,802 DEBUG Processing 540/667 atomic regions from SNP 161779 to 162379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:38,839 DEBUG Processing 536/705 atomic regions from SNP 160547 to 161147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,907 DEBUG Processing 336/548 atomic regions from SNP 100778 to 101378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:38,989 DEBUG Processing 26/520 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:38,990 DEBUG Processing 497/586 atomic regions from SNP 148819 to 149419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,019 DEBUG Processing 588/644 atomic regions from SNP 176272 to 176872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,051 DEBUG Processing 541/667 atomic regions from SNP 162079 to 162679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,095 DEBUG Processing 537/705 atomic regions from SNP 160847 to 161447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,136 DEBUG Processing 337/548 atomic regions from SNP 101078 to 101678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,194 DEBUG Processing 27/520 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:39,211 DEBUG Processing 498/586 atomic regions from SNP 149119 to 149719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,235 DEBUG Processing 589/644 atomic regions from SNP 176572 to 177172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,285 DEBUG Processing 542/667 atomic regions from SNP 162379 to 162979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,339 DEBUG Processing 538/705 atomic regions from SNP 161147 to 161747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,355 DEBUG Processing 338/548 atomic regions from SNP 101378 to 101978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,396 DEBUG Processing 28/520 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:39,439 DEBUG Processing 499/586 atomic regions from SNP 149419 to 150019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,454 DEBUG Processing 590/644 atomic regions from SNP 176872 to 177472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,534 DEBUG Processing 543/667 atomic regions from SNP 162679 to 163279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,585 DEBUG Processing 339/548 atomic regions from SNP 101678 to 102278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,601 DEBUG Processing 539/705 atomic regions from SNP 161447 to 162047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,601 DEBUG Processing 29/520 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:39,670 DEBUG Processing 591/644 atomic regions from SNP 177172 to 177772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,678 DEBUG Processing 500/586 atomic regions from SNP 149719 to 150319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,782 DEBUG Processing 544/667 atomic regions from SNP 162979 to 163579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:39,794 DEBUG Processing 30/520 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:39,817 DEBUG Processing 340/548 atomic regions from SNP 101978 to 102578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:39,881 DEBUG Processing 540/705 atomic regions from SNP 161747 to 162347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,898 DEBUG Processing 501/586 atomic regions from SNP 150019 to 150619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:39,914 DEBUG Processing 592/644 atomic regions from SNP 177472 to 178072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:39,989 DEBUG Processing 31/520 atomic regions from SNP 9030 to 9630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:40,039 DEBUG Processing 545/667 atomic regions from SNP 163279 to 163879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,044 DEBUG Processing 341/548 atomic regions from SNP 102278 to 102878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,114 DEBUG Processing 502/586 atomic regions from SNP 150319 to 150919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,153 DEBUG Processing 541/705 atomic regions from SNP 162047 to 162647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,172 DEBUG Processing 593/644 atomic regions from SNP 177772 to 178372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,197 DEBUG Processing 32/520 atomic regions from SNP 9330 to 9930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:40,265 DEBUG Processing 342/548 atomic regions from SNP 102578 to 103178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,282 DEBUG Processing 546/667 atomic regions from SNP 163579 to 164179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,331 DEBUG Processing 503/586 atomic regions from SNP 150619 to 151219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,451 DEBUG Processing 542/705 atomic regions from SNP 162347 to 162947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,474 DEBUG Processing 33/520 atomic regions from SNP 9630 to 10230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:40,474 DEBUG Processing 594/644 atomic regions from SNP 178072 to 178672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,540 DEBUG Processing 343/548 atomic regions from SNP 102878 to 103478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,555 DEBUG Processing 504/586 atomic regions from SNP 150919 to 151519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,596 DEBUG Processing 547/667 atomic regions from SNP 163879 to 164479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,670 DEBUG Processing 34/520 atomic regions from SNP 9930 to 10530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:40,700 DEBUG Processing 543/705 atomic regions from SNP 162647 to 163247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,714 DEBUG Processing 595/644 atomic regions from SNP 178372 to 178972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,766 DEBUG Processing 505/586 atomic regions from SNP 151219 to 151819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:40,773 DEBUG Processing 344/548 atomic regions from SNP 103178 to 103778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:40,848 DEBUG Processing 548/667 atomic regions from SNP 164179 to 164779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:40,861 DEBUG Processing 35/520 atomic regions from SNP 10230 to 10830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:40,943 DEBUG Processing 596/644 atomic regions from SNP 178672 to 179272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:40,953 DEBUG Processing 544/705 atomic regions from SNP 162947 to 163547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,972 DEBUG Processing 506/586 atomic regions from SNP 151519 to 152119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,002 DEBUG Processing 345/548 atomic regions from SNP 103478 to 104078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,054 DEBUG Processing 36/520 atomic regions from SNP 10530 to 11130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:41,096 DEBUG Processing 549/667 atomic regions from SNP 164479 to 165079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,151 DEBUG Processing 597/644 atomic regions from SNP 178972 to 179572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,175 DEBUG Processing 507/586 atomic regions from SNP 151819 to 152419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,217 DEBUG Processing 545/705 atomic regions from SNP 163247 to 163847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,227 DEBUG Processing 346/548 atomic regions from SNP 103778 to 104378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,254 DEBUG Processing 37/520 atomic regions from SNP 10830 to 11430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:41,345 DEBUG Processing 550/667 atomic regions from SNP 164779 to 165379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,381 DEBUG Processing 508/586 atomic regions from SNP 152119 to 152719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,383 DEBUG Processing 598/644 atomic regions from SNP 179272 to 179872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,457 DEBUG Processing 38/520 atomic regions from SNP 11130 to 11730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:41,458 DEBUG Processing 347/548 atomic regions from SNP 104078 to 104678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,482 DEBUG Processing 546/705 atomic regions from SNP 163547 to 164147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,586 DEBUG Processing 509/586 atomic regions from SNP 152419 to 153019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,596 DEBUG Processing 551/667 atomic regions from SNP 165079 to 165679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,613 DEBUG Processing 599/644 atomic regions from SNP 179572 to 180172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,659 DEBUG Processing 39/520 atomic regions from SNP 11430 to 12030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:41,701 DEBUG Processing 348/548 atomic regions from SNP 104378 to 104978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:41,752 DEBUG Processing 547/705 atomic regions from SNP 163847 to 164447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,799 DEBUG Processing 510/586 atomic regions from SNP 152719 to 153319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:41,842 DEBUG Processing 552/667 atomic regions from SNP 165379 to 165979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:41,850 DEBUG Processing 600/644 atomic regions from SNP 179872 to 180472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:41,858 DEBUG Processing 40/520 atomic regions from SNP 11730 to 12330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:41,921 DEBUG Processing 349/548 atomic regions from SNP 104678 to 105278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,005 DEBUG Processing 548/705 atomic regions from SNP 164147 to 164747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,007 DEBUG Processing 511/586 atomic regions from SNP 153019 to 153619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,061 DEBUG Processing 41/520 atomic regions from SNP 12030 to 12630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:42,076 DEBUG Processing 601/644 atomic regions from SNP 180172 to 180772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,086 DEBUG Processing 553/667 atomic regions from SNP 165679 to 166279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,136 DEBUG Processing 350/548 atomic regions from SNP 104978 to 105578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,212 DEBUG Processing 512/586 atomic regions from SNP 153319 to 153919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,264 DEBUG Processing 549/705 atomic regions from SNP 164447 to 165047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,272 DEBUG Processing 42/520 atomic regions from SNP 12330 to 12930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:42,299 DEBUG Processing 602/644 atomic regions from SNP 180472 to 181072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,344 DEBUG Processing 554/667 atomic regions from SNP 165979 to 166579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,365 DEBUG Processing 351/548 atomic regions from SNP 105278 to 105878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,411 DEBUG Processing 513/586 atomic regions from SNP 153619 to 154219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,469 DEBUG Processing 43/520 atomic regions from SNP 12630 to 13230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:42,509 DEBUG Processing 603/644 atomic regions from SNP 180772 to 181372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,518 DEBUG Processing 550/705 atomic regions from SNP 164747 to 165347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,592 DEBUG Processing 352/548 atomic regions from SNP 105578 to 106178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,616 DEBUG Processing 514/586 atomic regions from SNP 153919 to 154519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,623 DEBUG Processing 555/667 atomic regions from SNP 166279 to 166879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,661 DEBUG Processing 44/520 atomic regions from SNP 12930 to 13530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:42,715 DEBUG Processing 604/644 atomic regions from SNP 181072 to 181672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:42,765 DEBUG Processing 551/705 atomic regions from SNP 165047 to 165647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,819 DEBUG Processing 353/548 atomic regions from SNP 105878 to 106478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:42,828 DEBUG Processing 515/586 atomic regions from SNP 154219 to 154819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:42,858 DEBUG Processing 45/520 atomic regions from SNP 13230 to 13830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:42,892 DEBUG Processing 556/667 atomic regions from SNP 166579 to 167179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:42,937 DEBUG Processing 605/644 atomic regions from SNP 181372 to 181972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,036 DEBUG Processing 552/705 atomic regions from SNP 165347 to 165947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,047 DEBUG Processing 516/586 atomic regions from SNP 154519 to 155119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,051 DEBUG Processing 354/548 atomic regions from SNP 106178 to 106778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,069 DEBUG Processing 46/520 atomic regions from SNP 13530 to 14130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:43,142 DEBUG Processing 557/667 atomic regions from SNP 166879 to 167479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,183 DEBUG Processing 606/644 atomic regions from SNP 181672 to 182272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,261 DEBUG Processing 517/586 atomic regions from SNP 154819 to 155419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,276 DEBUG Processing 355/548 atomic regions from SNP 106478 to 107078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,278 DEBUG Processing 47/520 atomic regions from SNP 13830 to 14430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:43,313 DEBUG Processing 553/705 atomic regions from SNP 165647 to 166247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,382 DEBUG Processing 558/667 atomic regions from SNP 167179 to 167779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,417 DEBUG Processing 607/644 atomic regions from SNP 181972 to 182572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,463 DEBUG Processing 518/586 atomic regions from SNP 155119 to 155719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,476 DEBUG Processing 48/520 atomic regions from SNP 14130 to 14730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:43,501 DEBUG Processing 356/548 atomic regions from SNP 106778 to 107378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,591 DEBUG Processing 554/705 atomic regions from SNP 165947 to 166547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,627 DEBUG Processing 559/667 atomic regions from SNP 167479 to 168079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,648 DEBUG Processing 608/644 atomic regions from SNP 182272 to 182872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,665 DEBUG Processing 519/586 atomic regions from SNP 155419 to 156019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,674 DEBUG Processing 49/520 atomic regions from SNP 14430 to 15030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:43,731 DEBUG Processing 357/548 atomic regions from SNP 107078 to 107678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:43,872 DEBUG Processing 520/586 atomic regions from SNP 155719 to 156319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:43,873 DEBUG Processing 560/667 atomic regions from SNP 167779 to 168379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:43,873 DEBUG Processing 555/705 atomic regions from SNP 166247 to 166847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,874 DEBUG Processing 50/520 atomic regions from SNP 14730 to 15330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:43,887 DEBUG Processing 609/644 atomic regions from SNP 182572 to 183172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:43,949 DEBUG Processing 358/548 atomic regions from SNP 107378 to 107978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,075 DEBUG Processing 51/520 atomic regions from SNP 15030 to 15630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:44,079 DEBUG Processing 521/586 atomic regions from SNP 156019 to 156619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,100 DEBUG Processing 610/644 atomic regions from SNP 182872 to 183472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,114 DEBUG Processing 561/667 atomic regions from SNP 168079 to 168679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,133 DEBUG Processing 556/705 atomic regions from SNP 166547 to 167147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,156 DEBUG Processing 359/548 atomic regions from SNP 107678 to 108278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,273 DEBUG Processing 52/520 atomic regions from SNP 15330 to 15930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:44,284 DEBUG Processing 522/586 atomic regions from SNP 156319 to 156919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,311 DEBUG Processing 611/644 atomic regions from SNP 183172 to 183772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,356 DEBUG Processing 562/667 atomic regions from SNP 168379 to 168979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,372 DEBUG Processing 360/548 atomic regions from SNP 107978 to 108578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,409 DEBUG Processing 557/705 atomic regions from SNP 166847 to 167447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,470 DEBUG Processing 53/520 atomic regions from SNP 15630 to 16230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:44,492 DEBUG Processing 523/586 atomic regions from SNP 156619 to 157219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,521 DEBUG Processing 612/644 atomic regions from SNP 183472 to 184072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,593 DEBUG Processing 361/548 atomic regions from SNP 108278 to 108878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,596 DEBUG Processing 563/667 atomic regions from SNP 168679 to 169279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,670 DEBUG Processing 54/520 atomic regions from SNP 15930 to 16530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:44,674 DEBUG Processing 558/705 atomic regions from SNP 167147 to 167747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,697 DEBUG Processing 524/586 atomic regions from SNP 156919 to 157519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,726 DEBUG Processing 613/644 atomic regions from SNP 183772 to 184372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,813 DEBUG Processing 362/548 atomic regions from SNP 108578 to 109178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:44,837 DEBUG Processing 564/667 atomic regions from SNP 168979 to 169579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,875 DEBUG Processing 55/520 atomic regions from SNP 16230 to 16830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:44,906 DEBUG Processing 525/586 atomic regions from SNP 157219 to 157819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:44,935 DEBUG Processing 614/644 atomic regions from SNP 184072 to 184672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:44,940 DEBUG Processing 559/705 atomic regions from SNP 167447 to 168047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,032 DEBUG Processing 363/548 atomic regions from SNP 108878 to 109478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,082 DEBUG Processing 565/667 atomic regions from SNP 169279 to 169879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,087 DEBUG Processing 56/520 atomic regions from SNP 16530 to 17130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:45,121 DEBUG Processing 526/586 atomic regions from SNP 157519 to 158119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,152 DEBUG Processing 615/644 atomic regions from SNP 184372 to 184972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,187 DEBUG Processing 560/705 atomic regions from SNP 167747 to 168347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,245 DEBUG Processing 364/548 atomic regions from SNP 109178 to 109778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,286 DEBUG Processing 57/520 atomic regions from SNP 16830 to 17430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:45,319 DEBUG Processing 566/667 atomic regions from SNP 169579 to 170179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,337 DEBUG Processing 527/586 atomic regions from SNP 157819 to 158419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,373 DEBUG Processing 616/644 atomic regions from SNP 184672 to 185272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,435 DEBUG Processing 561/705 atomic regions from SNP 168047 to 168647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,467 DEBUG Processing 365/548 atomic regions from SNP 109478 to 110078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,484 DEBUG Processing 58/520 atomic regions from SNP 17130 to 17730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:45,550 DEBUG Processing 528/586 atomic regions from SNP 158119 to 158719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,562 DEBUG Processing 567/667 atomic regions from SNP 169879 to 170479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,589 DEBUG Processing 617/644 atomic regions from SNP 184972 to 185572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,679 DEBUG Processing 366/548 atomic regions from SNP 109778 to 110378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,679 DEBUG Processing 59/520 atomic regions from SNP 17430 to 18030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:45,680 DEBUG Processing 562/705 atomic regions from SNP 168347 to 168947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,752 DEBUG Processing 529/586 atomic regions from SNP 158419 to 159019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:45,800 DEBUG Processing 618/644 atomic regions from SNP 185272 to 185872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:45,803 DEBUG Processing 568/667 atomic regions from SNP 170179 to 170779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,881 DEBUG Processing 60/520 atomic regions from SNP 17730 to 18330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:45,897 DEBUG Processing 367/548 atomic regions from SNP 110078 to 110678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:45,939 DEBUG Processing 563/705 atomic regions from SNP 168647 to 169247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,959 DEBUG Processing 530/586 atomic regions from SNP 158719 to 159319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,010 DEBUG Processing 619/644 atomic regions from SNP 185572 to 186172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,044 DEBUG Processing 569/667 atomic regions from SNP 170479 to 171079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,084 DEBUG Processing 61/520 atomic regions from SNP 18030 to 18630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:46,126 DEBUG Processing 368/548 atomic regions from SNP 110378 to 110978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,167 DEBUG Processing 531/586 atomic regions from SNP 159019 to 159619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,221 DEBUG Processing 620/644 atomic regions from SNP 185872 to 186472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,221 DEBUG Processing 564/705 atomic regions from SNP 168947 to 169547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,275 DEBUG Processing 570/667 atomic regions from SNP 170779 to 171379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,275 DEBUG Processing 62/520 atomic regions from SNP 18330 to 18930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:46,339 DEBUG Processing 369/548 atomic regions from SNP 110678 to 111278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,371 DEBUG Processing 532/586 atomic regions from SNP 159319 to 159919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,434 DEBUG Processing 621/644 atomic regions from SNP 186172 to 186772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,475 DEBUG Processing 63/520 atomic regions from SNP 18630 to 19230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:46,492 DEBUG Processing 565/705 atomic regions from SNP 169247 to 169847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,512 DEBUG Processing 571/667 atomic regions from SNP 171079 to 171679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,556 DEBUG Processing 370/548 atomic regions from SNP 110978 to 111578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,575 DEBUG Processing 533/586 atomic regions from SNP 159619 to 160219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,646 DEBUG Processing 622/644 atomic regions from SNP 186472 to 187072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,674 DEBUG Processing 64/520 atomic regions from SNP 18930 to 19530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:46,745 DEBUG Processing 566/705 atomic regions from SNP 169547 to 170147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,754 DEBUG Processing 572/667 atomic regions from SNP 171379 to 171979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,777 DEBUG Processing 534/586 atomic regions from SNP 159919 to 160519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,777 DEBUG Processing 371/548 atomic regions from SNP 111278 to 111878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:46,851 DEBUG Processing 623/644 atomic regions from SNP 186772 to 187372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:46,870 DEBUG Processing 65/520 atomic regions from SNP 19230 to 19830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:46,980 DEBUG Processing 535/586 atomic regions from SNP 160219 to 160819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:46,997 DEBUG Processing 567/705 atomic regions from SNP 169847 to 170447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,998 DEBUG Processing 573/667 atomic regions from SNP 171679 to 172279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,001 DEBUG Processing 372/548 atomic regions from SNP 111578 to 112178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,063 DEBUG Processing 66/520 atomic regions from SNP 19530 to 20130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:47,064 DEBUG Processing 624/644 atomic regions from SNP 187072 to 187672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,188 DEBUG Processing 536/586 atomic regions from SNP 160519 to 161119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,221 DEBUG Processing 373/548 atomic regions from SNP 111878 to 112478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,236 DEBUG Processing 574/667 atomic regions from SNP 171979 to 172579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,242 DEBUG Processing 568/705 atomic regions from SNP 170147 to 170747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,265 DEBUG Processing 67/520 atomic regions from SNP 19830 to 20430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:47,278 DEBUG Processing 625/644 atomic regions from SNP 187372 to 187972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,395 DEBUG Processing 537/586 atomic regions from SNP 160819 to 161419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,444 DEBUG Processing 374/548 atomic regions from SNP 112178 to 112778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,470 DEBUG Processing 68/520 atomic regions from SNP 20130 to 20730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:47,493 DEBUG Processing 575/667 atomic regions from SNP 172279 to 172879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,494 DEBUG Processing 626/644 atomic regions from SNP 187672 to 188272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,496 DEBUG Processing 569/705 atomic regions from SNP 170447 to 171047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,602 DEBUG Processing 538/586 atomic regions from SNP 161119 to 161719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,668 DEBUG Processing 375/548 atomic regions from SNP 112478 to 113078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,675 DEBUG Processing 69/520 atomic regions from SNP 20430 to 21030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:47,710 DEBUG Processing 627/644 atomic regions from SNP 187972 to 188572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,740 DEBUG Processing 576/667 atomic regions from SNP 172579 to 173179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,752 DEBUG Processing 570/705 atomic regions from SNP 170747 to 171347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,803 DEBUG Processing 539/586 atomic regions from SNP 161419 to 162019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:47,872 DEBUG Processing 70/520 atomic regions from SNP 20730 to 21330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:47,886 DEBUG Processing 376/548 atomic regions from SNP 112778 to 113378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:47,920 DEBUG Processing 628/644 atomic regions from SNP 188272 to 188872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:47,979 DEBUG Processing 577/667 atomic regions from SNP 172879 to 173479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,004 DEBUG Processing 571/705 atomic regions from SNP 171047 to 171647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,018 DEBUG Processing 540/586 atomic regions from SNP 161719 to 162319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,076 DEBUG Processing 71/520 atomic regions from SNP 21030 to 21630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:48,105 DEBUG Processing 377/548 atomic regions from SNP 113078 to 113678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,133 DEBUG Processing 629/644 atomic regions from SNP 188572 to 189172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,213 DEBUG Processing 578/667 atomic regions from SNP 173179 to 173779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,227 DEBUG Processing 541/586 atomic regions from SNP 162019 to 162619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,245 DEBUG Processing 572/705 atomic regions from SNP 171347 to 171947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,279 DEBUG Processing 72/520 atomic regions from SNP 21330 to 21930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:48,323 DEBUG Processing 378/548 atomic regions from SNP 113378 to 113978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,350 DEBUG Processing 630/644 atomic regions from SNP 188872 to 189472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,433 DEBUG Processing 542/586 atomic regions from SNP 162319 to 162919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,444 DEBUG Processing 579/667 atomic regions from SNP 173479 to 174079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,475 DEBUG Processing 73/520 atomic regions from SNP 21630 to 22230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:48,500 DEBUG Processing 573/705 atomic regions from SNP 171647 to 172247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,549 DEBUG Processing 379/548 atomic regions from SNP 113678 to 114278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,560 DEBUG Processing 631/644 atomic regions from SNP 189172 to 189772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,661 DEBUG Processing 543/586 atomic regions from SNP 162619 to 163219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,679 DEBUG Processing 74/520 atomic regions from SNP 21930 to 22530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:48,686 DEBUG Processing 580/667 atomic regions from SNP 173779 to 174379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,761 DEBUG Processing 574/705 atomic regions from SNP 171947 to 172547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,772 DEBUG Processing 632/644 atomic regions from SNP 189472 to 190072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:48,773 DEBUG Processing 380/548 atomic regions from SNP 113978 to 114578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:48,877 DEBUG Processing 544/586 atomic regions from SNP 162919 to 163519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:48,887 DEBUG Processing 75/520 atomic regions from SNP 22230 to 22830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:48,922 DEBUG Processing 581/667 atomic regions from SNP 174079 to 174679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,978 DEBUG Processing 633/644 atomic regions from SNP 189772 to 190372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,001 DEBUG Processing 381/548 atomic regions from SNP 114278 to 114878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,035 DEBUG Processing 575/705 atomic regions from SNP 172247 to 172847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,118 DEBUG Processing 76/520 atomic regions from SNP 22530 to 23130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:49,124 DEBUG Processing 545/586 atomic regions from SNP 163219 to 163819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,269 DEBUG Processing 582/667 atomic regions from SNP 174379 to 174979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,288 DEBUG Processing 634/644 atomic regions from SNP 190072 to 190672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,326 DEBUG Processing 77/520 atomic regions from SNP 22830 to 23430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:49,331 DEBUG Processing 382/548 atomic regions from SNP 114578 to 115178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,341 DEBUG Processing 546/586 atomic regions from SNP 163519 to 164119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,391 DEBUG Processing 576/705 atomic regions from SNP 172547 to 173147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,573 DEBUG Processing 635/644 atomic regions from SNP 190372 to 190972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,596 DEBUG Processing 547/586 atomic regions from SNP 163819 to 164419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,600 DEBUG Processing 78/520 atomic regions from SNP 23130 to 23730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:49,601 DEBUG Processing 583/667 atomic regions from SNP 174679 to 175279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,604 DEBUG Processing 383/548 atomic regions from SNP 114878 to 115478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,668 DEBUG Processing 577/705 atomic regions from SNP 172847 to 173447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,859 DEBUG Processing 636/644 atomic regions from SNP 190672 to 191272 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:49,906 DEBUG Processing 79/520 atomic regions from SNP 23430 to 24030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:49,910 DEBUG Processing 548/586 atomic regions from SNP 164119 to 164719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:49,926 DEBUG Processing 384/548 atomic regions from SNP 115178 to 115778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:49,948 DEBUG Processing 584/667 atomic regions from SNP 174979 to 175579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,010 DEBUG Processing 578/705 atomic regions from SNP 173147 to 173747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,090 DEBUG Processing 637/644 atomic regions from SNP 190972 to 191572 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,114 DEBUG Processing 80/520 atomic regions from SNP 23730 to 24330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:50,129 DEBUG Processing 549/586 atomic regions from SNP 164419 to 165019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,155 DEBUG Processing 385/548 atomic regions from SNP 115478 to 116078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,200 DEBUG Processing 585/667 atomic regions from SNP 175279 to 175879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,283 DEBUG Processing 579/705 atomic regions from SNP 173447 to 174047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,301 DEBUG Processing 638/644 atomic regions from SNP 191272 to 191872 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,309 DEBUG Processing 81/520 atomic regions from SNP 24030 to 24630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:50,333 DEBUG Processing 550/586 atomic regions from SNP 164719 to 165319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,374 DEBUG Processing 386/548 atomic regions from SNP 115778 to 116378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,437 DEBUG Processing 586/667 atomic regions from SNP 175579 to 176179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,513 DEBUG Processing 82/520 atomic regions from SNP 24330 to 24930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:50,515 DEBUG Processing 639/644 atomic regions from SNP 191572 to 192172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,545 DEBUG Processing 551/586 atomic regions from SNP 165019 to 165619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,563 DEBUG Processing 580/705 atomic regions from SNP 173747 to 174347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,607 DEBUG Processing 387/548 atomic regions from SNP 116078 to 116678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,683 DEBUG Processing 587/667 atomic regions from SNP 175879 to 176479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,711 DEBUG Processing 83/520 atomic regions from SNP 24630 to 25230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:50,727 DEBUG Processing 640/644 atomic regions from SNP 191872 to 192472 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,758 DEBUG Processing 552/586 atomic regions from SNP 165319 to 165919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:50,832 DEBUG Processing 388/548 atomic regions from SNP 116378 to 116978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:50,840 DEBUG Processing 581/705 atomic regions from SNP 174047 to 174647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,913 DEBUG Processing 84/520 atomic regions from SNP 24930 to 25530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:50,931 DEBUG Processing 588/667 atomic regions from SNP 176179 to 176779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,941 DEBUG Processing 641/644 atomic regions from SNP 192172 to 192772 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:50,963 DEBUG Processing 553/586 atomic regions from SNP 165619 to 166219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,065 DEBUG Processing 389/548 atomic regions from SNP 116678 to 117278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,121 DEBUG Processing 85/520 atomic regions from SNP 25230 to 25830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:51,124 DEBUG Processing 582/705 atomic regions from SNP 174347 to 174947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,162 DEBUG Processing 642/644 atomic regions from SNP 192472 to 193072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,178 DEBUG Processing 554/586 atomic regions from SNP 165919 to 166519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,186 DEBUG Processing 589/667 atomic regions from SNP 176479 to 177079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,298 DEBUG Processing 390/548 atomic regions from SNP 116978 to 117578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,331 DEBUG Processing 86/520 atomic regions from SNP 25530 to 26130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:51,385 DEBUG Processing 643/644 atomic regions from SNP 192772 to 193372 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,388 DEBUG Processing 583/705 atomic regions from SNP 174647 to 175247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,413 DEBUG Processing 555/586 atomic regions from SNP 166219 to 166819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,442 DEBUG Processing 590/667 atomic regions from SNP 176779 to 177379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,524 DEBUG Processing 391/548 atomic regions from SNP 117278 to 117878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,545 DEBUG Processing 87/520 atomic regions from SNP 25830 to 26430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:51,656 DEBUG Processing 644/644 atomic regions from SNP 193072 to 193672 for chr12 (subchromosome 1 of 1). 2025-01-31 09:51:51,706 DEBUG Processing 584/705 atomic regions from SNP 174947 to 175547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,718 DEBUG Processing 556/586 atomic regions from SNP 166519 to 167119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:51,763 DEBUG Processing 591/667 atomic regions from SNP 177079 to 177679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,790 DEBUG Processing 88/520 atomic regions from SNP 26130 to 26730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:51,821 DEBUG Processing 392/548 atomic regions from SNP 117578 to 118178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:51,845 DEBUG Unique SNPs positions in subchromosome 1: 193673 2025-01-31 09:51:52,085 DEBUG Processing 557/586 atomic regions from SNP 166819 to 167419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,088 DEBUG Processing 592/667 atomic regions from SNP 177379 to 177979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,133 DEBUG Processing 585/705 atomic regions from SNP 175247 to 175847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,141 DEBUG Processing 393/548 atomic regions from SNP 117878 to 118478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,148 DEBUG Processing 89/520 atomic regions from SNP 26430 to 27030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:52,501 DEBUG Processing 593/667 atomic regions from SNP 177679 to 178279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,524 DEBUG Processing 558/586 atomic regions from SNP 167119 to 167719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,534 DEBUG Processing 90/520 atomic regions from SNP 26730 to 27330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:52,543 DEBUG Processing 394/548 atomic regions from SNP 118178 to 118778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,616 DEBUG Processing 586/705 atomic regions from SNP 175547 to 176147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,765 DEBUG Processing 91/520 atomic regions from SNP 27030 to 27630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:52,786 DEBUG Processing 594/667 atomic regions from SNP 177979 to 178579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,790 DEBUG Processing 559/586 atomic regions from SNP 167419 to 168019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:52,823 DEBUG Processing 395/548 atomic regions from SNP 118478 to 119078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:52,931 DEBUG Processing 587/705 atomic regions from SNP 175847 to 176447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,966 DEBUG Processing 92/520 atomic regions from SNP 27330 to 27930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:53,006 DEBUG Processing 560/586 atomic regions from SNP 167719 to 168319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,034 DEBUG Processing 595/667 atomic regions from SNP 178279 to 178879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,057 DEBUG Processing 396/548 atomic regions from SNP 118778 to 119378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,171 DEBUG Processing 93/520 atomic regions from SNP 27630 to 28230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:53,192 DEBUG Processing 588/705 atomic regions from SNP 176147 to 176747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,226 DEBUG Processing 561/586 atomic regions from SNP 168019 to 168619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,288 DEBUG Processing 596/667 atomic regions from SNP 178579 to 179179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,296 DEBUG Processing 397/548 atomic regions from SNP 119078 to 119678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,372 DEBUG Processing 94/520 atomic regions from SNP 27930 to 28530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:53,451 DEBUG Processing 589/705 atomic regions from SNP 176447 to 177047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,457 DEBUG Processing 562/586 atomic regions from SNP 168319 to 168919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,524 DEBUG Processing 398/548 atomic regions from SNP 119378 to 119978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,536 DEBUG Processing 597/667 atomic regions from SNP 178879 to 179479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,569 DEBUG Processing 95/520 atomic regions from SNP 28230 to 28830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:53,668 DEBUG Processing 563/586 atomic regions from SNP 168619 to 169219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,718 DEBUG Processing 590/705 atomic regions from SNP 176747 to 177347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,756 DEBUG Processing 399/548 atomic regions from SNP 119678 to 120278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:53,770 DEBUG Processing 96/520 atomic regions from SNP 28530 to 29130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:53,791 DEBUG Processing 598/667 atomic regions from SNP 179179 to 179779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,898 DEBUG Processing 564/586 atomic regions from SNP 168919 to 169519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:53,980 DEBUG Processing 97/520 atomic regions from SNP 28830 to 29430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:54,021 DEBUG Processing 400/548 atomic regions from SNP 119978 to 120578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,036 DEBUG Processing 591/705 atomic regions from SNP 177047 to 177647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,062 DEBUG Processing 599/667 atomic regions from SNP 179479 to 180079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,112 DEBUG Processing 565/586 atomic regions from SNP 169219 to 169819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,181 DEBUG Processing 98/520 atomic regions from SNP 29130 to 29730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:54,250 DEBUG Subchromosome time: 160.30190142907668, subchromosome SNPs: 193673 2025-01-31 09:51:54,250 DEBUG Estimated BADs: [1.87, 0.47, 0.93, 1.87, 0.47, 0.93, 0.47, 1.87, 6.54, 0.93, 0.47, 1.87, 0.93, 3.74, 0.93] SNP counts: [4308, 4818, 33643, 2193, 30416, 12642, 16375, 32393, 595, 9895, 9581, 7525, 12972, 5029, 11288] SNP IDs counts: [4308, 4818, 33643, 2193, 30416, 12642, 16375, 32393, 595, 9895, 9581, 7525, 12972, 5029, 11288] Critical gap: 610663bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.43Mbp, 8.29Mbp, 31.94Mbp, 33.15Mbp, 51.69Mbp, 59.01Mbp, 69.14Mbp, 86.72Mbp, 87.03Mbp, 93.18Mbp, 99.16Mbp, 103.30Mbp, 110.42Mbp, 113.06Mbp, 120.13Mbp] 2025-01-31 09:51:54,250 DEBUG chr12 time: 160.30257143406197 s 2025-01-31 09:51:54,263 DEBUG Processing 401/548 atomic regions from SNP 120278 to 120878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,311 DEBUG Processing 592/705 atomic regions from SNP 177347 to 177947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,332 DEBUG Processing 600/667 atomic regions from SNP 179779 to 180379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,343 DEBUG Processing 566/586 atomic regions from SNP 169519 to 170119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,371 DEBUG chr12: Fitting background model for 15 segments 2025-01-31 09:51:54,399 DEBUG Processing 99/520 atomic regions from SNP 29430 to 30030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:54,502 DEBUG Processing 402/548 atomic regions from SNP 120578 to 121178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,582 DEBUG Processing 567/586 atomic regions from SNP 169819 to 170419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,584 DEBUG Processing 593/705 atomic regions from SNP 177647 to 178247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,597 DEBUG Processing 601/667 atomic regions from SNP 180079 to 180679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,607 DEBUG Processing 100/520 atomic regions from SNP 29730 to 30330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:54,724 DEBUG Processing 403/548 atomic regions from SNP 120878 to 121478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:54,814 DEBUG Processing 101/520 atomic regions from SNP 30030 to 30630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:54,824 DEBUG Processing 568/586 atomic regions from SNP 170119 to 170719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:54,848 DEBUG Processing 602/667 atomic regions from SNP 180379 to 180979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,853 DEBUG Processing 594/705 atomic regions from SNP 177947 to 178547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,932 DEBUG Processing 404/548 atomic regions from SNP 121178 to 121778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,015 DEBUG Processing 102/520 atomic regions from SNP 30330 to 30930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:55,035 DEBUG Processing 569/586 atomic regions from SNP 170419 to 171019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,104 DEBUG Processing 603/667 atomic regions from SNP 180679 to 181279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,117 DEBUG Processing 595/705 atomic regions from SNP 178247 to 178847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,164 DEBUG Processing 405/548 atomic regions from SNP 121478 to 122078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,215 DEBUG Processing 103/520 atomic regions from SNP 30630 to 31230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:55,244 DEBUG Processing 570/586 atomic regions from SNP 170719 to 171319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,351 DEBUG Processing 604/667 atomic regions from SNP 180979 to 181579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,380 DEBUG Processing 596/705 atomic regions from SNP 178547 to 179147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,395 DEBUG Processing 406/548 atomic regions from SNP 121778 to 122378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,418 DEBUG Processing 104/520 atomic regions from SNP 30930 to 31530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:55,453 DEBUG Processing 571/586 atomic regions from SNP 171019 to 171619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,598 DEBUG Processing 605/667 atomic regions from SNP 181279 to 181879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,624 DEBUG Processing 407/548 atomic regions from SNP 122078 to 122678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,629 DEBUG Processing 105/520 atomic regions from SNP 31230 to 31830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:55,639 DEBUG Processing 597/705 atomic regions from SNP 178847 to 179447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,675 DEBUG Processing 572/586 atomic regions from SNP 171319 to 171919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,841 DEBUG Processing 606/667 atomic regions from SNP 181579 to 182179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,841 DEBUG Processing 106/520 atomic regions from SNP 31530 to 32130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:55,852 DEBUG Processing 408/548 atomic regions from SNP 122378 to 122978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:55,888 DEBUG Processing 573/586 atomic regions from SNP 171619 to 172219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:55,895 DEBUG Processing 598/705 atomic regions from SNP 179147 to 179747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,060 DEBUG Processing 107/520 atomic regions from SNP 31830 to 32430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:56,062 DEBUG Processing 409/548 atomic regions from SNP 122678 to 123278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,071 DEBUG Processing 607/667 atomic regions from SNP 181879 to 182479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,089 DEBUG Processing 574/586 atomic regions from SNP 171919 to 172519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,129 DEBUG Processing 599/705 atomic regions from SNP 179447 to 180047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,289 DEBUG Processing 108/520 atomic regions from SNP 32130 to 32730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:56,289 DEBUG Processing 410/548 atomic regions from SNP 122978 to 123578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,301 DEBUG Processing 575/586 atomic regions from SNP 172219 to 172819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,317 DEBUG Processing 608/667 atomic regions from SNP 182179 to 182779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,377 DEBUG Processing 600/705 atomic regions from SNP 179747 to 180347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,487 DEBUG Processing 109/520 atomic regions from SNP 32430 to 33030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:56,507 DEBUG Processing 411/548 atomic regions from SNP 123278 to 123878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,509 DEBUG Processing 576/586 atomic regions from SNP 172519 to 173119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,568 DEBUG Processing 609/667 atomic regions from SNP 182479 to 183079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,623 DEBUG Processing 601/705 atomic regions from SNP 180047 to 180647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,700 DEBUG Processing 110/520 atomic regions from SNP 32730 to 33330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:56,716 DEBUG Processing 412/548 atomic regions from SNP 123578 to 124178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,729 DEBUG Processing 577/586 atomic regions from SNP 172819 to 173419 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:56,824 DEBUG Processing 610/667 atomic regions from SNP 182779 to 183379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,860 DEBUG Processing 602/705 atomic regions from SNP 180347 to 180947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,917 DEBUG Processing 111/520 atomic regions from SNP 33030 to 33630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:56,926 DEBUG Processing 413/548 atomic regions from SNP 123878 to 124478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:56,952 DEBUG Processing 578/586 atomic regions from SNP 173119 to 173719 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,062 DEBUG Processing 611/667 atomic regions from SNP 183079 to 183679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,108 DEBUG Processing 603/705 atomic regions from SNP 180647 to 181247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,135 DEBUG Processing 112/520 atomic regions from SNP 33330 to 33930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,142 DEBUG Processing 414/548 atomic regions from SNP 124178 to 124778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,184 DEBUG Processing 579/586 atomic regions from SNP 173419 to 174019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,307 DEBUG Processing 612/667 atomic regions from SNP 183379 to 183979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,363 DEBUG Processing 113/520 atomic regions from SNP 33630 to 34230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,368 DEBUG Processing 604/705 atomic regions from SNP 180947 to 181547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,371 DEBUG Processing 415/548 atomic regions from SNP 124478 to 125078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,402 DEBUG Processing 580/586 atomic regions from SNP 173719 to 174319 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,550 DEBUG Processing 613/667 atomic regions from SNP 183679 to 184279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,587 DEBUG Processing 114/520 atomic regions from SNP 33930 to 34530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,597 DEBUG Processing 416/548 atomic regions from SNP 124778 to 125378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,609 DEBUG Processing 581/586 atomic regions from SNP 174019 to 174619 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,622 DEBUG Processing 605/705 atomic regions from SNP 181247 to 181847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,793 DEBUG Processing 614/667 atomic regions from SNP 183979 to 184579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,804 DEBUG Processing 115/520 atomic regions from SNP 34230 to 34830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:57,812 DEBUG Processing 582/586 atomic regions from SNP 174319 to 174919 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:57,824 DEBUG Processing 417/548 atomic regions from SNP 125078 to 125678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:57,875 DEBUG Processing 606/705 atomic regions from SNP 181547 to 182147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,017 DEBUG Processing 116/520 atomic regions from SNP 34530 to 35130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,023 DEBUG Processing 583/586 atomic regions from SNP 174619 to 175219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,038 DEBUG Processing 615/667 atomic regions from SNP 184279 to 184879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,042 DEBUG Processing 418/548 atomic regions from SNP 125378 to 125978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,135 DEBUG Processing 607/705 atomic regions from SNP 181847 to 182447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,227 DEBUG Processing 117/520 atomic regions from SNP 34830 to 35430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,244 DEBUG Processing 584/586 atomic regions from SNP 174919 to 175519 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,258 DEBUG Processing 419/548 atomic regions from SNP 125678 to 126278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,273 DEBUG Processing 616/667 atomic regions from SNP 184579 to 185179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,384 DEBUG Processing 608/705 atomic regions from SNP 182147 to 182747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,440 DEBUG Processing 118/520 atomic regions from SNP 35130 to 35730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,475 DEBUG Processing 420/548 atomic regions from SNP 125978 to 126578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,478 DEBUG Processing 585/586 atomic regions from SNP 175219 to 175819 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,508 DEBUG Processing 617/667 atomic regions from SNP 184879 to 185479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,637 DEBUG Processing 609/705 atomic regions from SNP 182447 to 183047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,647 DEBUG Processing 119/520 atomic regions from SNP 35430 to 36030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,687 DEBUG Processing 586/586 atomic regions from SNP 175519 to 176119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:51:58,692 DEBUG Processing 421/548 atomic regions from SNP 126278 to 126878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,739 DEBUG Processing 618/667 atomic regions from SNP 185179 to 185779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,822 DEBUG Unique SNPs positions in subchromosome 1: 176120 2025-01-31 09:51:58,859 DEBUG Processing 120/520 atomic regions from SNP 35730 to 36330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:58,902 DEBUG Processing 610/705 atomic regions from SNP 182747 to 183347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,912 DEBUG Processing 422/548 atomic regions from SNP 126578 to 127178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:58,969 DEBUG Processing 619/667 atomic regions from SNP 185479 to 186079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,083 DEBUG Processing 121/520 atomic regions from SNP 36030 to 36630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,131 DEBUG Processing 423/548 atomic regions from SNP 126878 to 127478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,158 DEBUG Processing 611/705 atomic regions from SNP 183047 to 183647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,214 DEBUG Processing 620/667 atomic regions from SNP 185779 to 186379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,298 DEBUG Processing 122/520 atomic regions from SNP 36330 to 36930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,340 DEBUG Processing 424/548 atomic regions from SNP 127178 to 127778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,401 DEBUG Processing 612/705 atomic regions from SNP 183347 to 183947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,474 DEBUG Processing 621/667 atomic regions from SNP 186079 to 186679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,500 DEBUG Processing 123/520 atomic regions from SNP 36630 to 37230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,551 DEBUG Processing 425/548 atomic regions from SNP 127478 to 128078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,657 DEBUG Processing 613/705 atomic regions from SNP 183647 to 184247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,701 DEBUG Processing 124/520 atomic regions from SNP 36930 to 37530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,727 DEBUG Processing 622/667 atomic regions from SNP 186379 to 186979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,762 DEBUG Processing 426/548 atomic regions from SNP 127778 to 128378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:51:59,903 DEBUG Processing 125/520 atomic regions from SNP 37230 to 37830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:51:59,913 DEBUG Processing 614/705 atomic regions from SNP 183947 to 184547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,967 DEBUG Processing 623/667 atomic regions from SNP 186679 to 187279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,975 DEBUG Processing 427/548 atomic regions from SNP 128078 to 128678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,109 DEBUG Processing 126/520 atomic regions from SNP 37530 to 38130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,176 DEBUG Processing 615/705 atomic regions from SNP 184247 to 184847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,196 DEBUG Processing 428/548 atomic regions from SNP 128378 to 128978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,213 DEBUG Processing 624/667 atomic regions from SNP 186979 to 187579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,327 DEBUG Processing 127/520 atomic regions from SNP 37830 to 38430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,409 DEBUG Processing 429/548 atomic regions from SNP 128678 to 129278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,412 DEBUG Processing 616/705 atomic regions from SNP 184547 to 185147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,447 DEBUG Processing 625/667 atomic regions from SNP 187279 to 187879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,559 DEBUG Processing 128/520 atomic regions from SNP 38130 to 38730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,623 DEBUG Processing 430/548 atomic regions from SNP 128978 to 129578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,659 DEBUG Processing 617/705 atomic regions from SNP 184847 to 185447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,690 DEBUG Processing 626/667 atomic regions from SNP 187579 to 188179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,780 DEBUG Processing 129/520 atomic regions from SNP 38430 to 39030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:00,842 DEBUG Processing 431/548 atomic regions from SNP 129278 to 129878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:00,906 DEBUG Processing 618/705 atomic regions from SNP 185147 to 185747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,944 DEBUG Processing 627/667 atomic regions from SNP 187879 to 188479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,989 DEBUG Processing 130/520 atomic regions from SNP 38730 to 39330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,061 DEBUG Processing 432/548 atomic regions from SNP 129578 to 130178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,153 DEBUG Processing 619/705 atomic regions from SNP 185447 to 186047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,185 DEBUG Processing 131/520 atomic regions from SNP 39030 to 39630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,197 DEBUG Processing 628/667 atomic regions from SNP 188179 to 188779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,276 DEBUG Processing 433/548 atomic regions from SNP 129878 to 130478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,404 DEBUG Processing 620/705 atomic regions from SNP 185747 to 186347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,409 DEBUG Processing 132/520 atomic regions from SNP 39330 to 39930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,440 DEBUG Processing 629/667 atomic regions from SNP 188479 to 189079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,489 DEBUG Processing 434/548 atomic regions from SNP 130178 to 130778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,622 DEBUG Processing 133/520 atomic regions from SNP 39630 to 40230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,654 DEBUG Processing 621/705 atomic regions from SNP 186047 to 186647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,681 DEBUG Processing 630/667 atomic regions from SNP 188779 to 189379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,706 DEBUG Processing 435/548 atomic regions from SNP 130478 to 131078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:01,838 DEBUG Processing 134/520 atomic regions from SNP 39930 to 40530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:01,908 DEBUG Processing 622/705 atomic regions from SNP 186347 to 186947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,933 DEBUG Processing 631/667 atomic regions from SNP 189079 to 189679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,934 DEBUG Processing 436/548 atomic regions from SNP 130778 to 131378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,026 DEBUG Processing 135/520 atomic regions from SNP 40230 to 40830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,154 DEBUG Processing 623/705 atomic regions from SNP 186647 to 187247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,155 DEBUG Processing 437/548 atomic regions from SNP 131078 to 131678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,174 DEBUG Processing 632/667 atomic regions from SNP 189379 to 189979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,231 DEBUG Processing 136/520 atomic regions from SNP 40530 to 41130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,371 DEBUG Processing 438/548 atomic regions from SNP 131378 to 131978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,397 DEBUG Processing 624/705 atomic regions from SNP 186947 to 187547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,412 DEBUG Processing 633/667 atomic regions from SNP 189679 to 190279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,451 DEBUG Processing 137/520 atomic regions from SNP 40830 to 41430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,580 DEBUG Processing 439/548 atomic regions from SNP 131678 to 132278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,643 DEBUG Processing 625/705 atomic regions from SNP 187247 to 187847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,651 DEBUG Processing 634/667 atomic regions from SNP 189979 to 190579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,656 DEBUG Processing 138/520 atomic regions from SNP 41130 to 41730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,785 DEBUG Processing 440/548 atomic regions from SNP 131978 to 132578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:02,854 DEBUG Processing 139/520 atomic regions from SNP 41430 to 42030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:02,880 DEBUG Processing 626/705 atomic regions from SNP 187547 to 188147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,881 DEBUG Processing 635/667 atomic regions from SNP 190279 to 190879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,993 DEBUG Processing 441/548 atomic regions from SNP 132278 to 132878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,068 DEBUG Processing 140/520 atomic regions from SNP 41730 to 42330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,116 DEBUG Processing 636/667 atomic regions from SNP 190579 to 191179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,126 DEBUG Processing 627/705 atomic regions from SNP 187847 to 188447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,198 DEBUG Processing 442/548 atomic regions from SNP 132578 to 133178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,283 DEBUG Processing 141/520 atomic regions from SNP 42030 to 42630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,345 DEBUG Processing 637/667 atomic regions from SNP 190879 to 191479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,362 DEBUG Processing 628/705 atomic regions from SNP 188147 to 188747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,408 DEBUG Processing 443/548 atomic regions from SNP 132878 to 133478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,481 DEBUG Processing 142/520 atomic regions from SNP 42330 to 42930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,573 DEBUG Processing 638/667 atomic regions from SNP 191179 to 191779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,598 DEBUG Processing 629/705 atomic regions from SNP 188447 to 189047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,619 DEBUG Processing 444/548 atomic regions from SNP 133178 to 133778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,683 DEBUG Processing 143/520 atomic regions from SNP 42630 to 43230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:03,797 DEBUG Processing 639/667 atomic regions from SNP 191479 to 192079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,833 DEBUG Processing 445/548 atomic regions from SNP 133478 to 134078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:03,846 DEBUG Processing 630/705 atomic regions from SNP 188747 to 189347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,901 DEBUG Processing 144/520 atomic regions from SNP 42930 to 43530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,022 DEBUG Processing 640/667 atomic regions from SNP 191779 to 192379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,045 DEBUG Processing 446/548 atomic regions from SNP 133778 to 134378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,088 DEBUG Processing 631/705 atomic regions from SNP 189047 to 189647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,106 DEBUG Processing 145/520 atomic regions from SNP 43230 to 43830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,255 DEBUG Processing 641/667 atomic regions from SNP 192079 to 192679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,258 DEBUG Processing 447/548 atomic regions from SNP 134078 to 134678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,311 DEBUG Processing 146/520 atomic regions from SNP 43530 to 44130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,330 DEBUG Processing 632/705 atomic regions from SNP 189347 to 189947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,482 DEBUG Processing 448/548 atomic regions from SNP 134378 to 134978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,497 DEBUG Processing 642/667 atomic regions from SNP 192379 to 192979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,518 DEBUG Processing 147/520 atomic regions from SNP 43830 to 44430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,575 DEBUG Processing 633/705 atomic regions from SNP 189647 to 190247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,698 DEBUG Processing 449/548 atomic regions from SNP 134678 to 135278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,720 DEBUG Processing 148/520 atomic regions from SNP 44130 to 44730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,735 DEBUG Processing 643/667 atomic regions from SNP 192679 to 193279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,820 DEBUG Processing 634/705 atomic regions from SNP 189947 to 190547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,922 DEBUG Processing 149/520 atomic regions from SNP 44430 to 45030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:04,924 DEBUG Processing 450/548 atomic regions from SNP 134978 to 135578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:04,978 DEBUG Processing 644/667 atomic regions from SNP 192979 to 193579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,055 DEBUG Processing 635/705 atomic regions from SNP 190247 to 190847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,116 DEBUG Processing 150/520 atomic regions from SNP 44730 to 45330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,137 DEBUG Processing 451/548 atomic regions from SNP 135278 to 135878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,213 DEBUG Processing 645/667 atomic regions from SNP 193279 to 193879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,293 DEBUG Processing 636/705 atomic regions from SNP 190547 to 191147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,311 DEBUG Processing 151/520 atomic regions from SNP 45030 to 45630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,358 DEBUG Processing 452/548 atomic regions from SNP 135578 to 136178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,457 DEBUG Processing 646/667 atomic regions from SNP 193579 to 194179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,508 DEBUG Processing 152/520 atomic regions from SNP 45330 to 45930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,540 DEBUG Processing 637/705 atomic regions from SNP 190847 to 191447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,573 DEBUG Processing 453/548 atomic regions from SNP 135878 to 136478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,696 DEBUG Processing 647/667 atomic regions from SNP 193879 to 194479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,707 DEBUG Processing 153/520 atomic regions from SNP 45630 to 46230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,784 DEBUG Processing 638/705 atomic regions from SNP 191147 to 191747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,790 DEBUG Processing 454/548 atomic regions from SNP 136178 to 136778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:05,931 DEBUG Processing 154/520 atomic regions from SNP 45930 to 46530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:05,945 DEBUG Processing 648/667 atomic regions from SNP 194179 to 194779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,025 DEBUG Processing 455/548 atomic regions from SNP 136478 to 137078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,048 DEBUG Processing 639/705 atomic regions from SNP 191447 to 192047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,124 DEBUG Processing 155/520 atomic regions from SNP 46230 to 46830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,177 DEBUG Processing 649/667 atomic regions from SNP 194479 to 195079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,262 DEBUG Processing 456/548 atomic regions from SNP 136778 to 137378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,312 DEBUG Processing 640/705 atomic regions from SNP 191747 to 192347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,334 DEBUG Processing 156/520 atomic regions from SNP 46530 to 47130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,436 DEBUG Processing 650/667 atomic regions from SNP 194779 to 195379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,517 DEBUG Processing 457/548 atomic regions from SNP 137078 to 137678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,566 DEBUG Processing 157/520 atomic regions from SNP 46830 to 47430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,574 DEBUG Processing 641/705 atomic regions from SNP 192047 to 192647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,667 DEBUG Processing 651/667 atomic regions from SNP 195079 to 195679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,726 DEBUG Processing 458/548 atomic regions from SNP 137378 to 137978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,762 DEBUG Processing 158/520 atomic regions from SNP 47130 to 47730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:06,816 DEBUG Processing 642/705 atomic regions from SNP 192347 to 192947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,905 DEBUG Processing 652/667 atomic regions from SNP 195379 to 195979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,938 DEBUG Processing 459/548 atomic regions from SNP 137678 to 138278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:06,952 DEBUG Processing 159/520 atomic regions from SNP 47430 to 48030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,055 DEBUG Processing 643/705 atomic regions from SNP 192647 to 193247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,079 DEBUG Subchromosome time: 150.55570374499075, subchromosome SNPs: 176120 2025-01-31 09:52:07,080 DEBUG Estimated BADs: [1.40, 4.19, 5.58, 1.40, 0.47, 1.40, 0.70, 0.16, 0.47, 1.40, 0.70, 0.47, 1.40, 8.37, 4.19, 2.79, 1.40, 2.79] SNP counts: [3358, 5292, 10068, 16507, 17632, 9361, 10511, 7154, 12312, 5118, 12605, 9484, 5095, 1629, 10470, 4606, 24916, 10002] SNP IDs counts: [3358, 5292, 10068, 16507, 17632, 9361, 10511, 7154, 12312, 5118, 12605, 9484, 5095, 1629, 10470, 4606, 24916, 10002] Critical gap: 552054bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 8.07Mbp, 13.62Mbp, 23.17Mbp, 33.74Mbp, 39.12Mbp, 45.14Mbp, 49.97Mbp, 57.23Mbp, 60.00Mbp, 67.45Mbp, 73.06Mbp, 75.88Mbp, 76.73Mbp, 82.34Mbp, 84.85Mbp, 98.50Mbp, 104.04Mbp] 2025-01-31 09:52:07,080 DEBUG chr15 time: 150.55617546406575 s 2025-01-31 09:52:07,146 DEBUG Processing 160/520 atomic regions from SNP 47730 to 48330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,155 DEBUG Processing 653/667 atomic regions from SNP 195679 to 196279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,167 DEBUG Processing 460/548 atomic regions from SNP 137978 to 138578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,192 DEBUG chr15: Fitting background model for 18 segments 2025-01-31 09:52:07,295 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:52:07,358 DEBUG Processing 644/705 atomic regions from SNP 192947 to 193547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,444 DEBUG Processing 161/520 atomic regions from SNP 48030 to 48630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,456 DEBUG Processing 461/548 atomic regions from SNP 138278 to 138878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,482 DEBUG Processing 654/667 atomic regions from SNP 195979 to 196579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,737 DEBUG Processing 645/705 atomic regions from SNP 193247 to 193847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,772 DEBUG Processing 462/548 atomic regions from SNP 138578 to 139178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:07,787 DEBUG Processing 162/520 atomic regions from SNP 48330 to 48930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:07,885 DEBUG Processing 655/667 atomic regions from SNP 196279 to 196879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,100 DEBUG Processing 163/520 atomic regions from SNP 48630 to 49230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,117 DEBUG Processing 646/705 atomic regions from SNP 193547 to 194147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,162 DEBUG Processing 463/548 atomic regions from SNP 138878 to 139478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,274 DEBUG Processing 656/667 atomic regions from SNP 196579 to 197179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,418 DEBUG Processing 164/520 atomic regions from SNP 48930 to 49530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,490 DEBUG Processing 647/705 atomic regions from SNP 193847 to 194447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,543 DEBUG Processing 464/548 atomic regions from SNP 139178 to 139778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:08,696 DEBUG Processing 657/667 atomic regions from SNP 196879 to 197479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,826 DEBUG Processing 165/520 atomic regions from SNP 49230 to 49830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:08,950 DEBUG Processing 648/705 atomic regions from SNP 194147 to 194747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,035 DEBUG Processing 465/548 atomic regions from SNP 139478 to 140078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,111 DEBUG Processing 658/667 atomic regions from SNP 197179 to 197779 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,226 DEBUG Processing 166/520 atomic regions from SNP 49530 to 50130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:09,423 DEBUG Processing 649/705 atomic regions from SNP 194447 to 195047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,501 DEBUG Processing 466/548 atomic regions from SNP 139778 to 140378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:09,571 DEBUG Processing 659/667 atomic regions from SNP 197479 to 198079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,734 DEBUG Processing 167/520 atomic regions from SNP 49830 to 50430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:09,949 DEBUG Processing 650/705 atomic regions from SNP 194747 to 195347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,993 DEBUG Processing 467/548 atomic regions from SNP 140078 to 140678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,099 DEBUG Processing 660/667 atomic regions from SNP 197779 to 198379 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,271 DEBUG Processing 168/520 atomic regions from SNP 50130 to 50730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:10,482 DEBUG Processing 468/548 atomic regions from SNP 140378 to 140978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,494 DEBUG Processing 651/705 atomic regions from SNP 195047 to 195647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,512 DEBUG Processing 661/667 atomic regions from SNP 198079 to 198679 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,614 DEBUG Processing 169/520 atomic regions from SNP 50430 to 51030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:10,878 DEBUG Processing 469/548 atomic regions from SNP 140678 to 141278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:10,916 DEBUG Processing 662/667 atomic regions from SNP 198379 to 198979 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,925 DEBUG Processing 652/705 atomic regions from SNP 195347 to 195947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,940 DEBUG Processing 170/520 atomic regions from SNP 50730 to 51330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,217 DEBUG Processing 470/548 atomic regions from SNP 140978 to 141578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,279 DEBUG Processing 171/520 atomic regions from SNP 51030 to 51630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,309 DEBUG Processing 653/705 atomic regions from SNP 195647 to 196247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,327 DEBUG Processing 663/667 atomic regions from SNP 198679 to 199279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,623 DEBUG Processing 471/548 atomic regions from SNP 141278 to 141878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:11,701 DEBUG Processing 172/520 atomic regions from SNP 51330 to 51930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:11,744 DEBUG Processing 654/705 atomic regions from SNP 195947 to 196547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,759 DEBUG Processing 664/667 atomic regions from SNP 198979 to 199579 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,093 DEBUG Processing 472/548 atomic regions from SNP 141578 to 142178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,164 DEBUG Processing 173/520 atomic regions from SNP 51630 to 52230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,226 DEBUG Processing 655/705 atomic regions from SNP 196247 to 196847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,257 DEBUG Processing 665/667 atomic regions from SNP 199279 to 199879 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,477 DEBUG Processing 473/548 atomic regions from SNP 141878 to 142478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:12,487 DEBUG Processing 174/520 atomic regions from SNP 51930 to 52530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,614 DEBUG Processing 656/705 atomic regions from SNP 196547 to 197147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,717 DEBUG Processing 666/667 atomic regions from SNP 199579 to 200179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,863 DEBUG Processing 175/520 atomic regions from SNP 52230 to 52830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:12,884 DEBUG Processing 474/548 atomic regions from SNP 142178 to 142778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,017 DEBUG Processing 657/705 atomic regions from SNP 196847 to 197447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,119 DEBUG Processing 667/667 atomic regions from SNP 199879 to 200479 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,273 DEBUG Processing 475/548 atomic regions from SNP 142478 to 143078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,317 DEBUG Processing 176/520 atomic regions from SNP 52530 to 53130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:13,417 DEBUG Unique SNPs positions in subchromosome 1: 200480 2025-01-31 09:52:13,447 DEBUG Processing 658/705 atomic regions from SNP 197147 to 197747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,728 DEBUG Processing 476/548 atomic regions from SNP 142778 to 143378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:13,757 DEBUG Processing 177/520 atomic regions from SNP 52830 to 53430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:13,894 DEBUG Processing 659/705 atomic regions from SNP 197447 to 198047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,025 DEBUG Processing 477/548 atomic regions from SNP 143078 to 143678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,066 DEBUG Processing 178/520 atomic regions from SNP 53130 to 53730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,244 DEBUG Processing 660/705 atomic regions from SNP 197747 to 198347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,397 DEBUG Processing 478/548 atomic regions from SNP 143378 to 143978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,445 DEBUG Processing 179/520 atomic regions from SNP 53430 to 54030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:14,619 DEBUG Processing 661/705 atomic regions from SNP 198047 to 198647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,790 DEBUG Processing 479/548 atomic regions from SNP 143678 to 144278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:14,837 DEBUG Processing 180/520 atomic regions from SNP 53730 to 54330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:15,105 DEBUG Processing 662/705 atomic regions from SNP 198347 to 198947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,319 DEBUG Processing 480/548 atomic regions from SNP 143978 to 144578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,352 DEBUG Processing 181/520 atomic regions from SNP 54030 to 54630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:15,577 DEBUG Processing 663/705 atomic regions from SNP 198647 to 199247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,728 DEBUG Processing 481/548 atomic regions from SNP 144278 to 144878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:15,770 DEBUG Processing 182/520 atomic regions from SNP 54330 to 54930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,017 DEBUG Processing 664/705 atomic regions from SNP 198947 to 199547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,175 DEBUG Processing 482/548 atomic regions from SNP 144578 to 145178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,224 DEBUG Processing 183/520 atomic regions from SNP 54630 to 55230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,544 DEBUG Processing 665/705 atomic regions from SNP 199247 to 199847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,675 DEBUG Processing 483/548 atomic regions from SNP 144878 to 145478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:16,741 DEBUG Processing 184/520 atomic regions from SNP 54930 to 55530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:16,825 DEBUG Subchromosome time: 187.89207815995906, subchromosome SNPs: 200480 2025-01-31 09:52:16,825 DEBUG Estimated BADs: [0.51, 4.07, 0.25, 10.18, 1.02, 0.17, 1.02, 4.07, 1.02, 2.04, 1.02, 10.18, 0.34, 10.18, 1.02, 0.34, 1.02, 2.04, 1.02, 2.04, 1.02, 0.51, 2.04] SNP counts: [29820, 1543, 1636, 928, 3200, 3823, 47520, 2028, 4917, 11897, 19544, 100, 4402, 100, 5003, 7108, 7727, 15082, 19213, 2399, 5664, 6040, 786] SNP IDs counts: [29820, 1543, 1636, 928, 3200, 3823, 47520, 2028, 4917, 11897, 19544, 100, 4402, 100, 5003, 7108, 7727, 15082, 19213, 2399, 5664, 6040, 786] Critical gap: 601780bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 22.05Mbp, 23.25Mbp, 23.77Mbp, 25.52Mbp, 27.96Mbp, 54.43Mbp, 55.51Mbp, 58.11Mbp, 65.29Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 80.93Mbp, 83.74Mbp, 88.19Mbp, 92.53Mbp, 100.74Mbp, 111.49Mbp, 112.77Mbp, 115.91Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:52:16,825 DEBUG chr13 time: 187.8927067569457 s 2025-01-31 09:52:17,103 DEBUG chr13: Fitting background model for 23 segments 2025-01-31 09:52:17,108 DEBUG Processing 666/705 atomic regions from SNP 199547 to 200147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,139 DEBUG Processing 484/548 atomic regions from SNP 145178 to 145778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,146 DEBUG Processing 185/520 atomic regions from SNP 55230 to 55830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:17,863 DEBUG Processing 186/520 atomic regions from SNP 55530 to 56130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:17,880 DEBUG Processing 485/548 atomic regions from SNP 145478 to 146078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:17,880 DEBUG Processing 667/705 atomic regions from SNP 199847 to 200447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,302 DEBUG Processing 187/520 atomic regions from SNP 55830 to 56430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:18,406 DEBUG Processing 486/548 atomic regions from SNP 145778 to 146378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:18,422 DEBUG Processing 668/705 atomic regions from SNP 200147 to 200747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,732 DEBUG Processing 188/520 atomic regions from SNP 56130 to 56730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:18,873 DEBUG Processing 487/548 atomic regions from SNP 146078 to 146678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,015 DEBUG Processing 669/705 atomic regions from SNP 200447 to 201047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,254 DEBUG Processing 189/520 atomic regions from SNP 56430 to 57030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,362 DEBUG Processing 488/548 atomic regions from SNP 146378 to 146978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,480 DEBUG Processing 670/705 atomic regions from SNP 200747 to 201347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,651 DEBUG Processing 190/520 atomic regions from SNP 56730 to 57330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:19,765 DEBUG Processing 489/548 atomic regions from SNP 146678 to 147278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:19,925 DEBUG Processing 671/705 atomic regions from SNP 201047 to 201647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,025 DEBUG Processing 191/520 atomic regions from SNP 57030 to 57630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,157 DEBUG Processing 490/548 atomic regions from SNP 146978 to 147578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:20,376 DEBUG Processing 672/705 atomic regions from SNP 201347 to 201947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,447 DEBUG Processing 192/520 atomic regions from SNP 57330 to 57930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,529 DEBUG Processing 491/548 atomic regions from SNP 147278 to 147878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:20,796 DEBUG Processing 193/520 atomic regions from SNP 57630 to 58230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:20,835 DEBUG Processing 673/705 atomic regions from SNP 201647 to 202247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,864 DEBUG Processing 492/548 atomic regions from SNP 147578 to 148178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,180 DEBUG Processing 194/520 atomic regions from SNP 57930 to 58530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:21,273 DEBUG Processing 493/548 atomic regions from SNP 147878 to 148478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,287 DEBUG Processing 674/705 atomic regions from SNP 201947 to 202547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,466 DEBUG Processing 195/520 atomic regions from SNP 58230 to 58830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:21,525 DEBUG Processing 494/548 atomic regions from SNP 148178 to 148778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,602 DEBUG Processing 675/705 atomic regions from SNP 202247 to 202847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,764 DEBUG Processing 196/520 atomic regions from SNP 58530 to 59130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:21,921 DEBUG Processing 495/548 atomic regions from SNP 148478 to 149078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:21,998 DEBUG Processing 676/705 atomic regions from SNP 202547 to 203147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,013 DEBUG Processing 197/520 atomic regions from SNP 58830 to 59430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,242 DEBUG Processing 496/548 atomic regions from SNP 148778 to 149378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,303 DEBUG Processing 198/520 atomic regions from SNP 59130 to 59730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,395 DEBUG Processing 677/705 atomic regions from SNP 202847 to 203447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,469 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:52:22,521 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:52:22,565 DEBUG Processing 497/548 atomic regions from SNP 149078 to 149678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,642 DEBUG Processing 199/520 atomic regions from SNP 59430 to 60030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:22,813 DEBUG Processing 678/705 atomic regions from SNP 203147 to 203747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,884 DEBUG Processing 498/548 atomic regions from SNP 149378 to 149978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:22,885 DEBUG Processing 200/520 atomic regions from SNP 59730 to 60330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,103 DEBUG Processing 201/520 atomic regions from SNP 60030 to 60630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,131 DEBUG Processing 679/705 atomic regions from SNP 203447 to 204047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,139 DEBUG Processing 499/548 atomic regions from SNP 149678 to 150278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,286 DEBUG Processing 202/520 atomic regions from SNP 60330 to 60930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,365 DEBUG Processing 680/705 atomic regions from SNP 203747 to 204347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,375 DEBUG Processing 500/548 atomic regions from SNP 149978 to 150578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,475 DEBUG Processing 203/520 atomic regions from SNP 60630 to 61230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,652 DEBUG Processing 501/548 atomic regions from SNP 150278 to 150878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,683 DEBUG Processing 681/705 atomic regions from SNP 204047 to 204647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,739 DEBUG Processing 204/520 atomic regions from SNP 60930 to 61530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,870 DEBUG Processing 502/548 atomic regions from SNP 150578 to 151178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:23,941 DEBUG Processing 205/520 atomic regions from SNP 61230 to 61830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:23,962 DEBUG Processing 682/705 atomic regions from SNP 204347 to 204947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,176 DEBUG Processing 206/520 atomic regions from SNP 61530 to 62130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,182 DEBUG Processing 503/548 atomic regions from SNP 150878 to 151478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,218 DEBUG Processing 683/705 atomic regions from SNP 204647 to 205247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,363 DEBUG Processing 207/520 atomic regions from SNP 61830 to 62430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,413 DEBUG Processing 504/548 atomic regions from SNP 151178 to 151778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,454 DEBUG Processing 684/705 atomic regions from SNP 204947 to 205547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,547 DEBUG Processing 208/520 atomic regions from SNP 62130 to 62730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,635 DEBUG chrY total SNP count: 71 2025-01-31 09:52:24,635 DEBUG chrY length: 91744698 2025-01-31 09:52:24,635 DEBUG ----------------------------------------- 2025-01-31 09:52:24,635 INFO Processing SNPs in chrY 2025-01-31 09:52:24,637 DEBUG Processing 505/548 atomic regions from SNP 151478 to 152078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,714 DEBUG Processing 685/705 atomic regions from SNP 205247 to 205847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,780 DEBUG Processing 209/520 atomic regions from SNP 62430 to 63030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:24,909 DEBUG Processing 506/548 atomic regions from SNP 151778 to 152378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:24,963 DEBUG Processing 686/705 atomic regions from SNP 205547 to 206147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,970 DEBUG Processing 210/520 atomic regions from SNP 62730 to 63330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,137 DEBUG Processing 507/548 atomic regions from SNP 152078 to 152678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,188 DEBUG Processing 211/520 atomic regions from SNP 63030 to 63630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,209 DEBUG Processing 687/705 atomic regions from SNP 205847 to 206447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,371 DEBUG Processing 508/548 atomic regions from SNP 152378 to 152978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,383 DEBUG Processing 212/520 atomic regions from SNP 63330 to 63930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,434 DEBUG Processing 688/705 atomic regions from SNP 206147 to 206747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,575 DEBUG Processing 213/520 atomic regions from SNP 63630 to 64230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,605 DEBUG Processing 509/548 atomic regions from SNP 152678 to 153278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,665 DEBUG Processing 689/705 atomic regions from SNP 206447 to 207047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,767 DEBUG Processing 214/520 atomic regions from SNP 63930 to 64530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:25,839 DEBUG Processing 510/548 atomic regions from SNP 152978 to 153578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:25,892 DEBUG Processing 690/705 atomic regions from SNP 206747 to 207347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,948 DEBUG Processing 215/520 atomic regions from SNP 64230 to 64830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,068 DEBUG Processing 511/548 atomic regions from SNP 153278 to 153878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,120 DEBUG Processing 691/705 atomic regions from SNP 207047 to 207647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,130 DEBUG Processing 216/520 atomic regions from SNP 64530 to 65130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,289 DEBUG Processing 512/548 atomic regions from SNP 153578 to 154178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,313 DEBUG Processing 217/520 atomic regions from SNP 64830 to 65430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,345 DEBUG Processing 692/705 atomic regions from SNP 207347 to 207947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,490 DEBUG Processing 513/548 atomic regions from SNP 153878 to 154478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,497 DEBUG Processing 218/520 atomic regions from SNP 65130 to 65730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,566 DEBUG Processing 693/705 atomic regions from SNP 207647 to 208247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,687 DEBUG Processing 219/520 atomic regions from SNP 65430 to 66030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,721 DEBUG Processing 514/548 atomic regions from SNP 154178 to 154778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:26,796 DEBUG Processing 694/705 atomic regions from SNP 207947 to 208547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,889 DEBUG Processing 220/520 atomic regions from SNP 65730 to 66330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:26,954 DEBUG Processing 515/548 atomic regions from SNP 154478 to 155078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,035 DEBUG Processing 695/705 atomic regions from SNP 208247 to 208847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,064 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:52:27,075 DEBUG Processing 221/520 atomic regions from SNP 66030 to 66630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,182 DEBUG Processing 516/548 atomic regions from SNP 154778 to 155378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,260 DEBUG Processing 222/520 atomic regions from SNP 66330 to 66930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,270 DEBUG Processing 696/705 atomic regions from SNP 208547 to 209147 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,426 DEBUG Processing 517/548 atomic regions from SNP 155078 to 155678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,460 DEBUG Processing 223/520 atomic regions from SNP 66630 to 67230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,543 DEBUG Processing 697/705 atomic regions from SNP 208847 to 209447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,656 DEBUG Processing 518/548 atomic regions from SNP 155378 to 155978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,671 DEBUG Processing 224/520 atomic regions from SNP 66930 to 67530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:27,808 DEBUG Processing 698/705 atomic regions from SNP 209147 to 209747 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,858 DEBUG Processing 519/548 atomic regions from SNP 155678 to 156278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:27,865 DEBUG Processing 225/520 atomic regions from SNP 67230 to 67830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,060 DEBUG Processing 226/520 atomic regions from SNP 67530 to 68130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,064 DEBUG Processing 520/548 atomic regions from SNP 155978 to 156578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,066 DEBUG Processing 699/705 atomic regions from SNP 209447 to 210047 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,255 DEBUG Processing 227/520 atomic regions from SNP 67830 to 68430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,271 DEBUG Processing 521/548 atomic regions from SNP 156278 to 156878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,319 DEBUG Processing 700/705 atomic regions from SNP 209747 to 210347 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,446 DEBUG Processing 228/520 atomic regions from SNP 68130 to 68730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,500 DEBUG Processing 522/548 atomic regions from SNP 156578 to 157178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,581 DEBUG Processing 701/705 atomic regions from SNP 210047 to 210647 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,630 DEBUG Processing 229/520 atomic regions from SNP 68430 to 69030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,736 DEBUG Processing 523/548 atomic regions from SNP 156878 to 157478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:28,823 DEBUG Processing 230/520 atomic regions from SNP 68730 to 69330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:28,833 DEBUG Processing 702/705 atomic regions from SNP 210347 to 210947 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,986 DEBUG Processing 524/548 atomic regions from SNP 157178 to 157778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,050 DEBUG Processing 231/520 atomic regions from SNP 69030 to 69630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,118 DEBUG Processing 703/705 atomic regions from SNP 210647 to 211247 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,210 DEBUG Processing 525/548 atomic regions from SNP 157478 to 158078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,273 DEBUG Processing 232/520 atomic regions from SNP 69330 to 69930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,375 DEBUG Processing 704/705 atomic regions from SNP 210947 to 211547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,451 DEBUG Processing 526/548 atomic regions from SNP 157778 to 158378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,482 DEBUG Processing 233/520 atomic regions from SNP 69630 to 70230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,608 DEBUG Processing 705/705 atomic regions from SNP 211247 to 211847 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,693 DEBUG Processing 527/548 atomic regions from SNP 158078 to 158678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:29,704 DEBUG Processing 234/520 atomic regions from SNP 69930 to 70530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,751 DEBUG Unique SNPs positions in subchromosome 1: 211848 2025-01-31 09:52:29,922 DEBUG Processing 235/520 atomic regions from SNP 70230 to 70830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:29,932 DEBUG Processing 528/548 atomic regions from SNP 158378 to 158978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:30,251 DEBUG Processing 236/520 atomic regions from SNP 70530 to 71130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,264 DEBUG Processing 529/548 atomic regions from SNP 158678 to 159278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:30,597 DEBUG Processing 237/520 atomic regions from SNP 70830 to 71430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,598 DEBUG Processing 530/548 atomic regions from SNP 158978 to 159578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:30,904 DEBUG Processing 238/520 atomic regions from SNP 71130 to 71730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:30,910 DEBUG Processing 531/548 atomic regions from SNP 159278 to 159878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,240 DEBUG Processing 239/520 atomic regions from SNP 71430 to 72030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,255 DEBUG Processing 532/548 atomic regions from SNP 159578 to 160178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,492 DEBUG Processing 533/548 atomic regions from SNP 159878 to 160478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,494 DEBUG Processing 240/520 atomic regions from SNP 71730 to 72330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,707 DEBUG Processing 534/548 atomic regions from SNP 160178 to 160778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,722 DEBUG Processing 241/520 atomic regions from SNP 72030 to 72630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:31,926 DEBUG Processing 535/548 atomic regions from SNP 160478 to 161078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:31,953 DEBUG Processing 242/520 atomic regions from SNP 72330 to 72930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,135 DEBUG Processing 536/548 atomic regions from SNP 160778 to 161378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,148 DEBUG Processing 243/520 atomic regions from SNP 72630 to 73230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,341 DEBUG Processing 244/520 atomic regions from SNP 72930 to 73530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,356 DEBUG Processing 537/548 atomic regions from SNP 161078 to 161678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,529 DEBUG Processing 245/520 atomic regions from SNP 73230 to 73830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,598 DEBUG Processing 538/548 atomic regions from SNP 161378 to 161978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,742 DEBUG Processing 246/520 atomic regions from SNP 73530 to 74130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:32,815 DEBUG Processing 539/548 atomic regions from SNP 161678 to 162278 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:32,955 DEBUG Processing 247/520 atomic regions from SNP 73830 to 74430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,031 DEBUG Processing 540/548 atomic regions from SNP 161978 to 162578 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,172 DEBUG Processing 248/520 atomic regions from SNP 74130 to 74730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,261 DEBUG Processing 541/548 atomic regions from SNP 162278 to 162878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,397 DEBUG Processing 249/520 atomic regions from SNP 74430 to 75030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,473 DEBUG Processing 542/548 atomic regions from SNP 162578 to 163178 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,589 DEBUG Processing 250/520 atomic regions from SNP 74730 to 75330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,684 DEBUG Processing 543/548 atomic regions from SNP 162878 to 163478 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,781 DEBUG Processing 251/520 atomic regions from SNP 75030 to 75630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:33,896 DEBUG Processing 544/548 atomic regions from SNP 163178 to 163778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:33,984 DEBUG Processing 252/520 atomic regions from SNP 75330 to 75930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,117 DEBUG Processing 545/548 atomic regions from SNP 163478 to 164078 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,185 DEBUG Processing 253/520 atomic regions from SNP 75630 to 76230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,192 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:52:34,341 DEBUG Processing 546/548 atomic regions from SNP 163778 to 164378 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,372 DEBUG Processing 254/520 atomic regions from SNP 75930 to 76530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,576 DEBUG Processing 255/520 atomic regions from SNP 76230 to 76830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,576 DEBUG Processing 547/548 atomic regions from SNP 164078 to 164678 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,762 DEBUG Processing 256/520 atomic regions from SNP 76530 to 77130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,804 DEBUG Processing 548/548 atomic regions from SNP 164378 to 164978 for chr16 (subchromosome 1 of 1). 2025-01-31 09:52:34,950 DEBUG Processing 257/520 atomic regions from SNP 76830 to 77430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:34,959 DEBUG Unique SNPs positions in subchromosome 1: 164979 2025-01-31 09:52:35,139 DEBUG Processing 258/520 atomic regions from SNP 77130 to 77730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,333 DEBUG Processing 259/520 atomic regions from SNP 77430 to 78030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,523 DEBUG Processing 260/520 atomic regions from SNP 77730 to 78330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:35,936 DEBUG Processing 261/520 atomic regions from SNP 78030 to 78630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,158 DEBUG Processing 262/520 atomic regions from SNP 78330 to 78930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,336 DEBUG Processing 263/520 atomic regions from SNP 78630 to 79230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,523 DEBUG Processing 264/520 atomic regions from SNP 78930 to 79530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,717 DEBUG Processing 265/520 atomic regions from SNP 79230 to 79830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:36,984 DEBUG Processing 266/520 atomic regions from SNP 79530 to 80130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,191 DEBUG Processing 267/520 atomic regions from SNP 79830 to 80430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,365 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:52:37,366 DEBUG chr18: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.025 2025-01-31 09:52:37,383 DEBUG Processing 268/520 atomic regions from SNP 80130 to 80730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,571 DEBUG Processing 269/520 atomic regions from SNP 80430 to 81030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,757 DEBUG Processing 270/520 atomic regions from SNP 80730 to 81330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:37,944 DEBUG Processing 271/520 atomic regions from SNP 81030 to 81630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,130 DEBUG Processing 272/520 atomic regions from SNP 81330 to 81930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,315 DEBUG Processing 273/520 atomic regions from SNP 81630 to 82230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,495 DEBUG Processing 274/520 atomic regions from SNP 81930 to 82530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,505 DEBUG Subchromosome time: 151.44518346898258, subchromosome SNPs: 164979 2025-01-31 09:52:38,505 DEBUG Estimated BADs: [3.28, 0.36, 2.19, 0.36, 1.09, 2.19, 0.55, 1.09, 0.22, 0.55, 1.09, 4.38, 2.19] SNP counts: [3721, 4487, 27709, 8134, 6612, 13545, 27815, 7345, 5983, 39727, 4402, 8758, 6741] SNP IDs counts: [3721, 4487, 27709, 8134, 6612, 13545, 27815, 7345, 5983, 39727, 4402, 8758, 6741] Critical gap: 537537bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.02Mbp], 5.46Mbp, 7.94Mbp, 23.51Mbp, 28.26Mbp, 31.87Mbp, 39.19Mbp, 55.82Mbp, 60.18Mbp, 64.08Mbp, 87.40Mbp, 89.85Mbp, 94.48Mbp, 98.21Mbp] 2025-01-31 09:52:38,505 DEBUG chr16 time: 151.4455940509215 s 2025-01-31 09:52:38,599 DEBUG chr16: Fitting background model for 13 segments 2025-01-31 09:52:38,672 DEBUG Processing 275/520 atomic regions from SNP 82230 to 82830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,854 DEBUG Processing 276/520 atomic regions from SNP 82530 to 83130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:38,929 DEBUG chr18 total SNP count: 152321 2025-01-31 09:52:38,930 DEBUG chr18 length: 90702639 2025-01-31 09:52:38,930 DEBUG ----------------------------------------- 2025-01-31 09:52:38,930 INFO Processing SNPs in chr18 2025-01-31 09:52:39,044 DEBUG Processing 277/520 atomic regions from SNP 82830 to 83430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,084 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 152321)] 2025-01-31 09:52:39,189 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:39,230 DEBUG Processing 278/520 atomic regions from SNP 83130 to 83730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,410 DEBUG Processing 279/520 atomic regions from SNP 83430 to 84030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,587 DEBUG Processing 280/520 atomic regions from SNP 83730 to 84330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,763 DEBUG Processing 281/520 atomic regions from SNP 84030 to 84630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:39,940 DEBUG Processing 282/520 atomic regions from SNP 84330 to 84930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,124 DEBUG Processing 283/520 atomic regions from SNP 84630 to 85230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,291 DEBUG Subchromosome time: 214.96761018503457, subchromosome SNPs: 211848 2025-01-31 09:52:40,291 DEBUG Estimated BADs: [10.69, 2.14, 0.36, 1.07, 0.21, 1.07, 0.53, 0.27, 0.53, 7.48, 1.07, 2.14, 1.07, 6.41, 2.14, 1.07, 10.69, 2.14, 1.07, 0.27, 2.14, 1.07, 0.36, 2.14] SNP counts: [152, 6575, 19508, 9913, 6907, 6202, 10287, 10761, 7435, 196, 18031, 6559, 11959, 2018, 1924, 6416, 119, 6052, 23613, 5504, 24035, 6774, 8107, 12801] SNP IDs counts: [152, 6575, 19508, 9913, 6907, 6202, 10287, 10761, 7435, 196, 18031, 6559, 11959, 2018, 1924, 6416, 119, 6052, 23613, 5504, 24035, 6774, 8107, 12801] Critical gap: 593240bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.72Mbp, 18.79Mbp, 24.30Mbp, 28.61Mbp, 32.19Mbp, 37.91Mbp, 44.45Mbp, 48.77Mbp, 48.88Mbp, 58.90Mbp, 62.46Mbp, 68.97Mbp, 70.02Mbp, 71.06Mbp, 74.83Mbp, 74.90Mbp, 78.14Mbp, 90.88Mbp, 94.13Mbp, 106.97Mbp, 110.61Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:52:40,291 DEBUG chr11 time: 214.96805755305104 s 2025-01-31 09:52:40,310 DEBUG Processing 284/520 atomic regions from SNP 84930 to 85530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,411 DEBUG chr11: Fitting background model for 24 segments 2025-01-31 09:52:40,491 DEBUG Processing 285/520 atomic regions from SNP 85230 to 85830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,668 DEBUG Processing 286/520 atomic regions from SNP 85530 to 86130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:40,853 DEBUG Processing 287/520 atomic regions from SNP 85830 to 86430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,035 DEBUG Processing 288/520 atomic regions from SNP 86130 to 86730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,216 DEBUG Processing 289/520 atomic regions from SNP 86430 to 87030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,266 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:52:41,267 DEBUG chr19: Signal quantile: 0.990. signal threshold: 10. Best RMSEA: 0.016 2025-01-31 09:52:41,398 DEBUG Processing 290/520 atomic regions from SNP 86730 to 87330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,583 DEBUG Processing 291/520 atomic regions from SNP 87030 to 87630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,761 DEBUG Processing 292/520 atomic regions from SNP 87330 to 87930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:41,943 DEBUG Processing 293/520 atomic regions from SNP 87630 to 88230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,129 DEBUG Processing 294/520 atomic regions from SNP 87930 to 88530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,316 DEBUG chr19 total SNP count: 103405 2025-01-31 09:52:42,317 DEBUG chr19 length: 61431566 2025-01-31 09:52:42,317 DEBUG ----------------------------------------- 2025-01-31 09:52:42,317 INFO Processing SNPs in chr19 2025-01-31 09:52:42,341 DEBUG Processing 295/520 atomic regions from SNP 88230 to 88830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,422 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 103405)] 2025-01-31 09:52:42,494 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:42,553 DEBUG Processing 296/520 atomic regions from SNP 88530 to 89130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,753 DEBUG Processing 297/520 atomic regions from SNP 88830 to 89430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:42,952 DEBUG Processing 298/520 atomic regions from SNP 89130 to 89730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,162 DEBUG Processing 299/520 atomic regions from SNP 89430 to 90030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,359 DEBUG Processing 300/520 atomic regions from SNP 89730 to 90330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,565 DEBUG Processing 301/520 atomic regions from SNP 90030 to 90630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,752 DEBUG Processing 302/520 atomic regions from SNP 90330 to 90930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:43,929 DEBUG Processing 303/520 atomic regions from SNP 90630 to 91230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,109 DEBUG Processing 304/520 atomic regions from SNP 90930 to 91530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,290 DEBUG Processing 305/520 atomic regions from SNP 91230 to 91830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,472 DEBUG Processing 306/520 atomic regions from SNP 91530 to 92130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,650 DEBUG Processing 307/520 atomic regions from SNP 91830 to 92430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:44,831 DEBUG Processing 308/520 atomic regions from SNP 92130 to 92730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,012 DEBUG Processing 309/520 atomic regions from SNP 92430 to 93030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,193 DEBUG Processing 310/520 atomic regions from SNP 92730 to 93330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,372 DEBUG Processing 311/520 atomic regions from SNP 93030 to 93630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,549 DEBUG Processing 312/520 atomic regions from SNP 93330 to 93930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,725 DEBUG Processing 313/520 atomic regions from SNP 93630 to 94230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:45,905 DEBUG Processing 314/520 atomic regions from SNP 93930 to 94530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,085 DEBUG Processing 315/520 atomic regions from SNP 94230 to 94830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,259 DEBUG Processing 316/520 atomic regions from SNP 94530 to 95130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,436 DEBUG Processing 317/520 atomic regions from SNP 94830 to 95430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,619 DEBUG Processing 318/520 atomic regions from SNP 95130 to 95730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,799 DEBUG Processing 319/520 atomic regions from SNP 95430 to 96030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:46,975 DEBUG Processing 320/520 atomic regions from SNP 95730 to 96330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,151 DEBUG Processing 321/520 atomic regions from SNP 96030 to 96630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,325 DEBUG Processing 322/520 atomic regions from SNP 96330 to 96930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,502 DEBUG Processing 323/520 atomic regions from SNP 96630 to 97230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,686 DEBUG Processing 324/520 atomic regions from SNP 96930 to 97530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:47,870 DEBUG Processing 325/520 atomic regions from SNP 97230 to 97830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,046 DEBUG Processing 326/520 atomic regions from SNP 97530 to 98130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,219 DEBUG Processing 327/520 atomic regions from SNP 97830 to 98430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,396 DEBUG Processing 328/520 atomic regions from SNP 98130 to 98730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,576 DEBUG Processing 329/520 atomic regions from SNP 98430 to 99030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,757 DEBUG Processing 330/520 atomic regions from SNP 98730 to 99330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:48,936 DEBUG Processing 331/520 atomic regions from SNP 99030 to 99630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,115 DEBUG Processing 332/520 atomic regions from SNP 99330 to 99930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,298 DEBUG Processing 333/520 atomic regions from SNP 99630 to 100230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,479 DEBUG Processing 334/520 atomic regions from SNP 99930 to 100530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,656 DEBUG Processing 335/520 atomic regions from SNP 100230 to 100830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:49,832 DEBUG Processing 336/520 atomic regions from SNP 100530 to 101130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,010 DEBUG Processing 337/520 atomic regions from SNP 100830 to 101430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,191 DEBUG Processing 338/520 atomic regions from SNP 101130 to 101730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,376 DEBUG Processing 339/520 atomic regions from SNP 101430 to 102030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,556 DEBUG Processing 340/520 atomic regions from SNP 101730 to 102330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,729 DEBUG Processing 341/520 atomic regions from SNP 102030 to 102630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:50,905 DEBUG Processing 342/520 atomic regions from SNP 102330 to 102930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,090 DEBUG Processing 343/520 atomic regions from SNP 102630 to 103230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,271 DEBUG Processing 344/520 atomic regions from SNP 102930 to 103530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,445 DEBUG Processing 345/520 atomic regions from SNP 103230 to 103830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,621 DEBUG Processing 346/520 atomic regions from SNP 103530 to 104130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,801 DEBUG Processing 347/520 atomic regions from SNP 103830 to 104430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:51,986 DEBUG Processing 348/520 atomic regions from SNP 104130 to 104730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,166 DEBUG Processing 349/520 atomic regions from SNP 104430 to 105030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,345 DEBUG Processing 350/520 atomic regions from SNP 104730 to 105330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,522 DEBUG Processing 351/520 atomic regions from SNP 105030 to 105630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,709 DEBUG Processing 352/520 atomic regions from SNP 105330 to 105930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:52,903 DEBUG Processing 353/520 atomic regions from SNP 105630 to 106230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,098 DEBUG Processing 354/520 atomic regions from SNP 105930 to 106530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,281 DEBUG Processing 355/520 atomic regions from SNP 106230 to 106830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,464 DEBUG Processing 356/520 atomic regions from SNP 106530 to 107130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,643 DEBUG Processing 357/520 atomic regions from SNP 106830 to 107430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,822 DEBUG Processing 358/520 atomic regions from SNP 107130 to 107730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:53,999 DEBUG Processing 359/520 atomic regions from SNP 107430 to 108030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,183 DEBUG Processing 360/520 atomic regions from SNP 107730 to 108330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,368 DEBUG Processing 361/520 atomic regions from SNP 108030 to 108630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,545 DEBUG Processing 362/520 atomic regions from SNP 108330 to 108930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,723 DEBUG Processing 363/520 atomic regions from SNP 108630 to 109230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:54,903 DEBUG Processing 364/520 atomic regions from SNP 108930 to 109530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,025 DEBUG Segmenting atomic regions: 2025-01-31 09:52:55,071 DEBUG Processing 1/343 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,082 DEBUG Processing 365/520 atomic regions from SNP 109230 to 109830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,242 DEBUG Processing 2/343 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,265 DEBUG Processing 366/520 atomic regions from SNP 109530 to 110130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,403 DEBUG Processing 3/343 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,451 DEBUG Processing 367/520 atomic regions from SNP 109830 to 110430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,567 DEBUG Processing 4/343 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,640 DEBUG Processing 368/520 atomic regions from SNP 110130 to 110730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,729 DEBUG Processing 5/343 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,816 DEBUG Processing 369/520 atomic regions from SNP 110430 to 111030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:55,913 DEBUG Processing 6/343 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:55,994 DEBUG Processing 370/520 atomic regions from SNP 110730 to 111330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,102 DEBUG Processing 7/343 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,178 DEBUG Processing 371/520 atomic regions from SNP 111030 to 111630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,274 DEBUG Processing 8/343 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,362 DEBUG Processing 372/520 atomic regions from SNP 111330 to 111930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,444 DEBUG Processing 9/343 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,544 DEBUG Processing 373/520 atomic regions from SNP 111630 to 112230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,603 DEBUG Processing 10/343 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,726 DEBUG Processing 374/520 atomic regions from SNP 111930 to 112530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,760 DEBUG Processing 11/343 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:56,907 DEBUG Processing 375/520 atomic regions from SNP 112230 to 112830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:56,924 DEBUG Processing 12/343 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,090 DEBUG Processing 376/520 atomic regions from SNP 112530 to 113130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,106 DEBUG Processing 13/343 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,273 DEBUG Processing 14/343 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,276 DEBUG Processing 377/520 atomic regions from SNP 112830 to 113430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,462 DEBUG Processing 15/343 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,464 DEBUG Processing 378/520 atomic regions from SNP 113130 to 113730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,645 DEBUG Segmenting atomic regions: 2025-01-31 09:52:57,648 DEBUG Processing 16/343 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,652 DEBUG Processing 379/520 atomic regions from SNP 113430 to 114030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,713 DEBUG Processing 1/506 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:57,837 DEBUG Processing 17/343 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:57,839 DEBUG Processing 380/520 atomic regions from SNP 113730 to 114330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:57,901 DEBUG Processing 2/506 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:58,028 DEBUG Processing 381/520 atomic regions from SNP 114030 to 114630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,038 DEBUG Processing 18/343 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,088 DEBUG Processing 3/506 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:58,212 DEBUG Processing 382/520 atomic regions from SNP 114330 to 114930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,224 DEBUG Processing 19/343 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,263 DEBUG Processing 4/506 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:58,405 DEBUG Processing 383/520 atomic regions from SNP 114630 to 115230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,417 DEBUG Processing 20/343 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,440 DEBUG Processing 5/506 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:58,610 DEBUG Processing 21/343 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,614 DEBUG Processing 384/520 atomic regions from SNP 114930 to 115530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,625 DEBUG Processing 6/506 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:58,778 DEBUG Processing 22/343 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,805 DEBUG Processing 385/520 atomic regions from SNP 115230 to 115830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,813 DEBUG Processing 7/506 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:58,937 DEBUG Processing 23/343 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:58,993 DEBUG Processing 386/520 atomic regions from SNP 115530 to 116130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:58,994 DEBUG Processing 8/506 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:59,121 DEBUG Processing 24/343 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,171 DEBUG Processing 9/506 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:59,180 DEBUG Processing 387/520 atomic regions from SNP 115830 to 116430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,302 DEBUG Processing 25/343 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,346 DEBUG Processing 10/506 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:59,357 DEBUG Processing 388/520 atomic regions from SNP 116130 to 116730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,487 DEBUG Processing 26/343 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,526 DEBUG Processing 11/506 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:59,542 DEBUG Processing 389/520 atomic regions from SNP 116430 to 117030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,667 DEBUG Processing 27/343 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,708 DEBUG Processing 12/506 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:59,729 DEBUG Processing 390/520 atomic regions from SNP 116730 to 117330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:52:59,845 DEBUG Processing 28/343 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:52:59,892 DEBUG Processing 13/506 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:52:59,919 DEBUG Processing 391/520 atomic regions from SNP 117030 to 117630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,002 DEBUG Processing 29/343 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,090 DEBUG Processing 14/506 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:00,101 DEBUG Processing 392/520 atomic regions from SNP 117330 to 117930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,159 DEBUG Processing 30/343 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,278 DEBUG Processing 15/506 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:00,289 DEBUG Processing 393/520 atomic regions from SNP 117630 to 118230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,314 DEBUG Processing 31/343 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,465 DEBUG Processing 16/506 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:00,473 DEBUG Processing 32/343 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,480 DEBUG Processing 394/520 atomic regions from SNP 117930 to 118530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,651 DEBUG Processing 17/506 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:00,652 DEBUG Processing 33/343 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,670 DEBUG Processing 395/520 atomic regions from SNP 118230 to 118830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:00,846 DEBUG Processing 34/343 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:00,849 DEBUG Processing 18/506 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:00,857 DEBUG Processing 396/520 atomic regions from SNP 118530 to 119130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,034 DEBUG Processing 35/343 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,046 DEBUG Processing 397/520 atomic regions from SNP 118830 to 119430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,056 DEBUG Processing 19/506 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,193 DEBUG Processing 36/343 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,237 DEBUG Processing 398/520 atomic regions from SNP 119130 to 119730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,241 DEBUG Processing 20/506 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,345 DEBUG Processing 37/343 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,427 DEBUG Processing 21/506 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,429 DEBUG Processing 399/520 atomic regions from SNP 119430 to 120030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,501 DEBUG Processing 38/343 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,602 DEBUG Processing 22/506 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,610 DEBUG Processing 400/520 atomic regions from SNP 119730 to 120330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,668 DEBUG Processing 39/343 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,778 DEBUG Processing 23/506 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,792 DEBUG Processing 401/520 atomic regions from SNP 120030 to 120630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:01,840 DEBUG Processing 40/343 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:01,965 DEBUG Processing 24/506 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:01,983 DEBUG Processing 402/520 atomic regions from SNP 120330 to 120930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,019 DEBUG Processing 41/343 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,156 DEBUG Processing 25/506 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,181 DEBUG Processing 403/520 atomic regions from SNP 120630 to 121230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,185 DEBUG Processing 42/343 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,340 DEBUG Processing 26/506 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,351 DEBUG Processing 43/343 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,377 DEBUG Processing 404/520 atomic regions from SNP 120930 to 121530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,510 DEBUG Processing 44/343 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,519 DEBUG Processing 27/506 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,564 DEBUG Processing 405/520 atomic regions from SNP 121230 to 121830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,670 DEBUG Processing 45/343 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,700 DEBUG Processing 28/506 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,747 DEBUG Processing 406/520 atomic regions from SNP 121530 to 122130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,827 DEBUG Processing 46/343 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:02,884 DEBUG Processing 29/506 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:02,932 DEBUG Processing 407/520 atomic regions from SNP 121830 to 122430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:02,978 DEBUG Processing 47/343 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,066 DEBUG Processing 30/506 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,120 DEBUG Processing 408/520 atomic regions from SNP 122130 to 122730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,134 DEBUG Processing 48/343 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,246 DEBUG Processing 31/506 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,294 DEBUG Processing 49/343 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,311 DEBUG Processing 409/520 atomic regions from SNP 122430 to 123030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,425 DEBUG Processing 32/506 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,450 DEBUG Processing 50/343 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,495 DEBUG Processing 410/520 atomic regions from SNP 122730 to 123330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,606 DEBUG Processing 33/506 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,622 DEBUG Processing 51/343 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,680 DEBUG Processing 411/520 atomic regions from SNP 123030 to 123630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,782 DEBUG Processing 34/506 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:03,799 DEBUG Processing 52/343 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,866 DEBUG Processing 412/520 atomic regions from SNP 123330 to 123930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:03,952 DEBUG Processing 53/343 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:03,959 DEBUG Processing 35/506 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,053 DEBUG Processing 413/520 atomic regions from SNP 123630 to 124230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,114 DEBUG Processing 54/343 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,143 DEBUG Processing 36/506 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,239 DEBUG Processing 414/520 atomic regions from SNP 123930 to 124530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,275 DEBUG Processing 55/343 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,329 DEBUG Processing 37/506 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,422 DEBUG Processing 415/520 atomic regions from SNP 124230 to 124830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,429 DEBUG Processing 56/343 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,507 DEBUG Processing 38/506 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,583 DEBUG Processing 57/343 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,606 DEBUG Processing 416/520 atomic regions from SNP 124530 to 125130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,686 DEBUG Processing 39/506 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,743 DEBUG Processing 58/343 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,792 DEBUG Processing 417/520 atomic regions from SNP 124830 to 125430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:04,860 DEBUG Processing 40/506 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:04,900 DEBUG Processing 59/343 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:04,985 DEBUG Processing 418/520 atomic regions from SNP 125130 to 125730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,043 DEBUG Processing 41/506 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,053 DEBUG Processing 60/343 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,175 DEBUG Processing 419/520 atomic regions from SNP 125430 to 126030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,216 DEBUG Processing 61/343 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,231 DEBUG Processing 42/506 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,357 DEBUG Processing 420/520 atomic regions from SNP 125730 to 126330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,377 DEBUG Processing 62/343 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,420 DEBUG Processing 43/506 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,530 DEBUG Processing 63/343 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,539 DEBUG Processing 421/520 atomic regions from SNP 126030 to 126630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,600 DEBUG Processing 44/506 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,688 DEBUG Processing 64/343 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,725 DEBUG Processing 422/520 atomic regions from SNP 126330 to 126930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,774 DEBUG Processing 45/506 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,847 DEBUG Processing 65/343 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:05,924 DEBUG Processing 423/520 atomic regions from SNP 126630 to 127230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:05,961 DEBUG Processing 46/506 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:05,997 DEBUG Processing 66/343 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,107 DEBUG Processing 424/520 atomic regions from SNP 126930 to 127530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,138 DEBUG Processing 47/506 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,149 DEBUG Processing 67/343 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,291 DEBUG Processing 425/520 atomic regions from SNP 127230 to 127830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,305 DEBUG Processing 68/343 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,318 DEBUG Processing 48/506 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,460 DEBUG Processing 69/343 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,474 DEBUG Processing 426/520 atomic regions from SNP 127530 to 128130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,497 DEBUG Processing 49/506 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,610 DEBUG Processing 70/343 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,658 DEBUG Processing 427/520 atomic regions from SNP 127830 to 128430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,674 DEBUG Processing 50/506 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,761 DEBUG Processing 71/343 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:06,838 DEBUG Processing 428/520 atomic regions from SNP 128130 to 128730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:06,849 DEBUG Processing 51/506 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:06,913 DEBUG Processing 72/343 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,024 DEBUG Processing 429/520 atomic regions from SNP 128430 to 129030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,028 DEBUG Processing 52/506 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,061 DEBUG Processing 73/343 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,215 DEBUG Processing 53/506 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,215 DEBUG Processing 430/520 atomic regions from SNP 128730 to 129330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,216 DEBUG Processing 74/343 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,375 DEBUG Processing 75/343 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,399 DEBUG Processing 54/506 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,405 DEBUG Processing 431/520 atomic regions from SNP 129030 to 129630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,540 DEBUG Processing 76/343 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,594 DEBUG Processing 55/506 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,604 DEBUG Processing 432/520 atomic regions from SNP 129330 to 129930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,683 DEBUG Processing 77/343 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,765 DEBUG Processing 56/506 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,783 DEBUG Processing 433/520 atomic regions from SNP 129630 to 130230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,832 DEBUG Processing 78/343 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:07,937 DEBUG Processing 57/506 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:07,959 DEBUG Processing 434/520 atomic regions from SNP 129930 to 130530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:07,980 DEBUG Processing 79/343 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,114 DEBUG Processing 58/506 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,134 DEBUG Processing 80/343 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,141 DEBUG Processing 435/520 atomic regions from SNP 130230 to 130830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,288 DEBUG Processing 81/343 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,293 DEBUG Processing 59/506 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,324 DEBUG Processing 436/520 atomic regions from SNP 130530 to 131130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,438 DEBUG Processing 82/343 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,466 DEBUG Processing 60/506 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,503 DEBUG Processing 437/520 atomic regions from SNP 130830 to 131430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,587 DEBUG Processing 83/343 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,643 DEBUG Processing 61/506 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,681 DEBUG Processing 438/520 atomic regions from SNP 131130 to 131730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,736 DEBUG Processing 84/343 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,819 DEBUG Processing 62/506 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:08,861 DEBUG Processing 439/520 atomic regions from SNP 131430 to 132030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:08,881 DEBUG Processing 85/343 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:08,990 DEBUG Processing 63/506 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,028 DEBUG Processing 86/343 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,041 DEBUG Processing 440/520 atomic regions from SNP 131730 to 132330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,172 DEBUG Processing 64/506 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,190 DEBUG Processing 87/343 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,229 DEBUG Processing 441/520 atomic regions from SNP 132030 to 132630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,348 DEBUG Processing 88/343 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,349 DEBUG Processing 65/506 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,419 DEBUG Processing 442/520 atomic regions from SNP 132330 to 132930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,495 DEBUG Processing 89/343 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,520 DEBUG Processing 66/506 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,603 DEBUG Processing 443/520 atomic regions from SNP 132630 to 133230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,651 DEBUG Processing 90/343 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,696 DEBUG Processing 67/506 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,784 DEBUG Processing 444/520 atomic regions from SNP 132930 to 133530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:09,806 DEBUG Processing 91/343 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,878 DEBUG Processing 68/506 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:09,956 DEBUG Processing 92/343 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:09,964 DEBUG Processing 445/520 atomic regions from SNP 133230 to 133830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,054 DEBUG Processing 69/506 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,111 DEBUG Processing 93/343 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,146 DEBUG Processing 446/520 atomic regions from SNP 133530 to 134130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,224 DEBUG Processing 70/506 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,263 DEBUG Processing 94/343 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,328 DEBUG Processing 447/520 atomic regions from SNP 133830 to 134430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,401 DEBUG Processing 71/506 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,413 DEBUG Processing 95/343 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,511 DEBUG Processing 448/520 atomic regions from SNP 134130 to 134730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,567 DEBUG Processing 96/343 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,579 DEBUG Processing 72/506 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,700 DEBUG Processing 449/520 atomic regions from SNP 134430 to 135030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,726 DEBUG Processing 97/343 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,764 DEBUG Processing 73/506 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:10,885 DEBUG Processing 98/343 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:10,887 DEBUG Processing 450/520 atomic regions from SNP 134730 to 135330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:10,949 DEBUG Processing 74/506 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,037 DEBUG Processing 99/343 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,069 DEBUG Processing 451/520 atomic regions from SNP 135030 to 135630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,126 DEBUG Processing 75/506 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,192 DEBUG Processing 100/343 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,256 DEBUG Processing 452/520 atomic regions from SNP 135330 to 135930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,303 DEBUG Processing 76/506 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,347 DEBUG Processing 101/343 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,448 DEBUG Processing 453/520 atomic regions from SNP 135630 to 136230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,488 DEBUG Processing 77/506 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,502 DEBUG Processing 102/343 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,641 DEBUG Processing 454/520 atomic regions from SNP 135930 to 136530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,669 DEBUG Processing 103/343 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,680 DEBUG Processing 78/506 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,831 DEBUG Processing 455/520 atomic regions from SNP 136230 to 136830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:11,832 DEBUG Processing 104/343 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:11,871 DEBUG Processing 79/506 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:11,990 DEBUG Processing 105/343 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,017 DEBUG Processing 456/520 atomic regions from SNP 136530 to 137130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,054 DEBUG Processing 80/506 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,150 DEBUG Processing 106/343 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,208 DEBUG Processing 457/520 atomic regions from SNP 136830 to 137430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,235 DEBUG Processing 81/506 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,308 DEBUG Processing 107/343 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,400 DEBUG Processing 458/520 atomic regions from SNP 137130 to 137730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,419 DEBUG Processing 82/506 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,468 DEBUG Processing 108/343 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,599 DEBUG Processing 459/520 atomic regions from SNP 137430 to 138030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,613 DEBUG Processing 83/506 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,630 DEBUG Processing 109/343 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,789 DEBUG Processing 110/343 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,796 DEBUG Processing 460/520 atomic regions from SNP 137730 to 138330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:12,798 DEBUG Processing 84/506 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,945 DEBUG Processing 111/343 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:12,979 DEBUG Processing 85/506 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:12,997 DEBUG Processing 461/520 atomic regions from SNP 138030 to 138630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,107 DEBUG Processing 112/343 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,165 DEBUG Processing 86/506 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,189 DEBUG Processing 462/520 atomic regions from SNP 138330 to 138930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,265 DEBUG Processing 113/343 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,352 DEBUG Processing 87/506 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,378 DEBUG Processing 463/520 atomic regions from SNP 138630 to 139230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,413 DEBUG Processing 114/343 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,535 DEBUG Processing 88/506 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,570 DEBUG Processing 464/520 atomic regions from SNP 138930 to 139530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,579 DEBUG Processing 115/343 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,712 DEBUG Processing 89/506 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,760 DEBUG Processing 465/520 atomic regions from SNP 139230 to 139830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:13,765 DEBUG Processing 116/343 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,884 DEBUG Processing 90/506 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:13,922 DEBUG Processing 117/343 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:13,947 DEBUG Processing 466/520 atomic regions from SNP 139530 to 140130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,066 DEBUG Processing 91/506 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,073 DEBUG Processing 118/343 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,126 DEBUG Processing 467/520 atomic regions from SNP 139830 to 140430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,230 DEBUG Processing 119/343 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,250 DEBUG Processing 92/506 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,308 DEBUG Processing 468/520 atomic regions from SNP 140130 to 140730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,383 DEBUG Processing 120/343 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,432 DEBUG Processing 93/506 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,496 DEBUG Processing 469/520 atomic regions from SNP 140430 to 141030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,534 DEBUG Processing 121/343 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,607 DEBUG Processing 94/506 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,683 DEBUG Processing 470/520 atomic regions from SNP 140730 to 141330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,692 DEBUG Processing 122/343 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,785 DEBUG Processing 95/506 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:14,846 DEBUG Processing 123/343 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:14,868 DEBUG Processing 471/520 atomic regions from SNP 141030 to 141630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:14,965 DEBUG Processing 96/506 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,013 DEBUG Processing 124/343 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,052 DEBUG Processing 472/520 atomic regions from SNP 141330 to 141930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,145 DEBUG Processing 97/506 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,189 DEBUG Processing 125/343 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,242 DEBUG Processing 473/520 atomic regions from SNP 141630 to 142230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,323 DEBUG Processing 98/506 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,347 DEBUG Processing 126/343 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,437 DEBUG Processing 474/520 atomic regions from SNP 141930 to 142530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,503 DEBUG Processing 99/506 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,504 DEBUG Processing 127/343 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,625 DEBUG Processing 475/520 atomic regions from SNP 142230 to 142830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,662 DEBUG Processing 128/343 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,686 DEBUG Processing 100/506 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,813 DEBUG Processing 476/520 atomic regions from SNP 142530 to 143130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:15,821 DEBUG Processing 129/343 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:15,869 DEBUG Processing 101/506 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:15,983 DEBUG Processing 130/343 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,005 DEBUG Processing 477/520 atomic regions from SNP 142830 to 143430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,053 DEBUG Processing 102/506 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,138 DEBUG Processing 131/343 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,195 DEBUG Processing 478/520 atomic regions from SNP 143130 to 143730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,239 DEBUG Processing 103/506 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,287 DEBUG Processing 132/343 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,376 DEBUG Processing 479/520 atomic regions from SNP 143430 to 144030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,423 DEBUG Processing 104/506 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,449 DEBUG Processing 133/343 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,559 DEBUG Processing 480/520 atomic regions from SNP 143730 to 144330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,602 DEBUG Processing 105/506 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,605 DEBUG Processing 134/343 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,747 DEBUG Processing 481/520 atomic regions from SNP 144030 to 144630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,762 DEBUG Processing 135/343 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,783 DEBUG Processing 106/506 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:16,921 DEBUG Processing 136/343 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:16,937 DEBUG Processing 482/520 atomic regions from SNP 144330 to 144930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:16,967 DEBUG Processing 107/506 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,081 DEBUG Processing 137/343 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,127 DEBUG Processing 483/520 atomic regions from SNP 144630 to 145230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,149 DEBUG Processing 108/506 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,240 DEBUG Processing 138/343 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,321 DEBUG Processing 484/520 atomic regions from SNP 144930 to 145530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,335 DEBUG Processing 109/506 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,388 DEBUG Processing 139/343 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,515 DEBUG Processing 485/520 atomic regions from SNP 145230 to 145830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,525 DEBUG Processing 110/506 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,545 DEBUG Processing 140/343 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,710 DEBUG Processing 486/520 atomic regions from SNP 145530 to 146130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,712 DEBUG Processing 141/343 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,716 DEBUG Processing 111/506 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:17,867 DEBUG Processing 142/343 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:17,894 DEBUG Processing 487/520 atomic regions from SNP 145830 to 146430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:17,895 DEBUG Processing 112/506 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,021 DEBUG Processing 143/343 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,073 DEBUG Processing 113/506 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,075 DEBUG Processing 488/520 atomic regions from SNP 146130 to 146730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,185 DEBUG Processing 144/343 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,259 DEBUG Processing 114/506 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,265 DEBUG Processing 489/520 atomic regions from SNP 146430 to 147030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,340 DEBUG Processing 145/343 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,450 DEBUG Processing 115/506 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,461 DEBUG Processing 490/520 atomic regions from SNP 146730 to 147330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,491 DEBUG Processing 146/343 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,635 DEBUG Processing 116/506 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,651 DEBUG Processing 147/343 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,653 DEBUG Processing 491/520 atomic regions from SNP 147030 to 147630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,812 DEBUG Processing 148/343 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:18,819 DEBUG Processing 117/506 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:18,845 DEBUG Processing 492/520 atomic regions from SNP 147330 to 147930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:18,973 DEBUG Processing 149/343 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,003 DEBUG Processing 118/506 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,037 DEBUG Processing 493/520 atomic regions from SNP 147630 to 148230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,128 DEBUG Processing 150/343 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,190 DEBUG Processing 119/506 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,228 DEBUG Processing 494/520 atomic regions from SNP 147930 to 148530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,286 DEBUG Processing 151/343 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,384 DEBUG Processing 120/506 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,415 DEBUG Processing 495/520 atomic regions from SNP 148230 to 148830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,470 DEBUG Processing 152/343 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,566 DEBUG Processing 121/506 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,605 DEBUG Processing 496/520 atomic regions from SNP 148530 to 149130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,629 DEBUG Processing 153/343 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,762 DEBUG Processing 122/506 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,788 DEBUG Processing 154/343 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,796 DEBUG Processing 497/520 atomic regions from SNP 148830 to 149430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:19,949 DEBUG Processing 155/343 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:19,955 DEBUG Processing 123/506 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:19,990 DEBUG Processing 498/520 atomic regions from SNP 149130 to 149730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,108 DEBUG Processing 156/343 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,139 DEBUG Processing 124/506 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,181 DEBUG Processing 499/520 atomic regions from SNP 149430 to 150030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,265 DEBUG Processing 157/343 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,320 DEBUG Processing 125/506 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,367 DEBUG Processing 500/520 atomic regions from SNP 149730 to 150330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,426 DEBUG Processing 158/343 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,503 DEBUG Processing 126/506 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,550 DEBUG Processing 501/520 atomic regions from SNP 150030 to 150630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,581 DEBUG Processing 159/343 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,693 DEBUG Processing 127/506 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,736 DEBUG Processing 160/343 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,742 DEBUG Processing 502/520 atomic regions from SNP 150330 to 150930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:20,875 DEBUG Processing 128/506 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:20,900 DEBUG Processing 161/343 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:20,935 DEBUG Processing 503/520 atomic regions from SNP 150630 to 151230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,048 DEBUG Processing 129/506 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,053 DEBUG Processing 162/343 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,126 DEBUG Processing 504/520 atomic regions from SNP 150930 to 151530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,204 DEBUG Processing 163/343 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,224 DEBUG Processing 130/506 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,307 DEBUG Processing 505/520 atomic regions from SNP 151230 to 151830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,366 DEBUG Processing 164/343 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,409 DEBUG Processing 131/506 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,486 DEBUG Processing 506/520 atomic regions from SNP 151530 to 152130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,519 DEBUG Processing 165/343 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,592 DEBUG Processing 132/506 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,671 DEBUG Processing 166/343 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,673 DEBUG Processing 507/520 atomic regions from SNP 151830 to 152430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,769 DEBUG Processing 133/506 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,831 DEBUG Processing 167/343 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:21,861 DEBUG Processing 508/520 atomic regions from SNP 152130 to 152730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:21,946 DEBUG Processing 134/506 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:21,988 DEBUG Processing 168/343 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,050 DEBUG Processing 509/520 atomic regions from SNP 152430 to 153030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,124 DEBUG Processing 135/506 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,141 DEBUG Processing 169/343 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,240 DEBUG Processing 510/520 atomic regions from SNP 152730 to 153330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,298 DEBUG Processing 170/343 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,306 DEBUG Processing 136/506 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,427 DEBUG Processing 511/520 atomic regions from SNP 153030 to 153630 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,457 DEBUG Processing 171/343 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,490 DEBUG Processing 137/506 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,612 DEBUG Processing 512/520 atomic regions from SNP 153330 to 153930 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,624 DEBUG Processing 172/343 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,675 DEBUG Processing 138/506 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,780 DEBUG Processing 173/343 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,797 DEBUG Processing 513/520 atomic regions from SNP 153630 to 154230 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:22,859 DEBUG Processing 139/506 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:22,934 DEBUG Processing 174/343 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:22,979 DEBUG Processing 514/520 atomic regions from SNP 153930 to 154530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,039 DEBUG Processing 140/506 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,093 DEBUG Processing 175/343 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,166 DEBUG Processing 515/520 atomic regions from SNP 154230 to 154830 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,212 DEBUG Processing 141/506 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,246 DEBUG Processing 176/343 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,355 DEBUG Processing 516/520 atomic regions from SNP 154530 to 155130 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,392 DEBUG Processing 142/506 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,397 DEBUG Processing 177/343 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,540 DEBUG Processing 517/520 atomic regions from SNP 154830 to 155430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,554 DEBUG Processing 178/343 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,575 DEBUG Processing 143/506 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,710 DEBUG Processing 179/343 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,724 DEBUG Processing 518/520 atomic regions from SNP 155130 to 155730 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,756 DEBUG Processing 144/506 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:23,861 DEBUG Processing 180/343 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:23,908 DEBUG Processing 519/520 atomic regions from SNP 155430 to 156030 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:23,936 DEBUG Processing 145/506 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,013 DEBUG Processing 181/343 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,091 DEBUG Processing 520/520 atomic regions from SNP 155730 to 156330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:53:24,114 DEBUG Processing 146/506 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,167 DEBUG Processing 182/343 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,208 DEBUG Unique SNPs positions in subchromosome 1: 156331 2025-01-31 09:53:24,289 DEBUG Processing 147/506 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,320 DEBUG Processing 183/343 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,461 DEBUG Processing 148/506 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,467 DEBUG Processing 184/343 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,623 DEBUG Processing 185/343 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,644 DEBUG Processing 149/506 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,780 DEBUG Processing 186/343 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:24,828 DEBUG Processing 150/506 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:24,927 DEBUG Processing 187/343 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,005 DEBUG Processing 151/506 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,082 DEBUG Processing 188/343 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,177 DEBUG Processing 152/506 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,238 DEBUG Processing 189/343 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,350 DEBUG Processing 153/506 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,388 DEBUG Processing 190/343 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,528 DEBUG Processing 154/506 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,537 DEBUG Processing 191/343 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,693 DEBUG Processing 192/343 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,709 DEBUG Processing 155/506 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,846 DEBUG Processing 193/343 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:25,891 DEBUG Processing 156/506 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:25,997 DEBUG Processing 194/343 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,069 DEBUG Processing 157/506 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,149 DEBUG Processing 195/343 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,243 DEBUG Processing 158/506 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,300 DEBUG Processing 196/343 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,417 DEBUG Processing 159/506 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,452 DEBUG Processing 197/343 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,593 DEBUG Processing 160/506 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,605 DEBUG Processing 198/343 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,758 DEBUG Processing 199/343 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,770 DEBUG Processing 161/506 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:26,819 DEBUG Subchromosome time: 131.85569219302852, subchromosome SNPs: 156331 2025-01-31 09:53:26,820 DEBUG Estimated BADs: [1.20, 0.40, 4.78, 2.39, 4.78, 0.40, 1.20, 3.59, 0.60, 4.78, 0.40, 1.20, 0.20] SNP counts: [21122, 10626, 7686, 11399, 4479, 12015, 2499, 5892, 12286, 2720, 3599, 55499, 6509] SNP IDs counts: [21122, 10626, 7686, 11399, 4479, 12015, 2499, 5892, 12286, 2720, 3599, 55499, 6509] Critical gap: 533548bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.15Mbp, 23.53Mbp, 27.60Mbp, 33.81Mbp, 36.36Mbp, 44.19Mbp, 45.54Mbp, 48.67Mbp, 55.93Mbp, 57.36Mbp, 59.56Mbp, 90.68Mbp, 94.99Mbp] 2025-01-31 09:53:26,820 DEBUG chr17 time: 131.85618784592953 s 2025-01-31 09:53:26,912 DEBUG chr17: Fitting background model for 13 segments 2025-01-31 09:53:26,923 DEBUG Processing 200/343 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:26,955 DEBUG Processing 162/506 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,085 DEBUG Processing 201/343 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,161 DEBUG Processing 163/506 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,232 DEBUG Processing 202/343 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,352 DEBUG Processing 164/506 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,385 DEBUG Processing 203/343 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,539 DEBUG Processing 165/506 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,556 DEBUG Processing 204/343 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,716 DEBUG Processing 205/343 atomic regions from SNP 61404 to 62004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,721 DEBUG Processing 166/506 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:27,875 DEBUG Processing 206/343 atomic regions from SNP 61704 to 62304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:27,903 DEBUG Processing 167/506 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,046 DEBUG Processing 207/343 atomic regions from SNP 62004 to 62604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,093 DEBUG Processing 168/506 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,217 DEBUG Processing 208/343 atomic regions from SNP 62304 to 62904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,291 DEBUG Processing 169/506 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,380 DEBUG Processing 209/343 atomic regions from SNP 62604 to 63204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,485 DEBUG Processing 170/506 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,544 DEBUG Processing 210/343 atomic regions from SNP 62904 to 63504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,675 DEBUG Processing 171/506 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,711 DEBUG Processing 211/343 atomic regions from SNP 63204 to 63804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:28,863 DEBUG Processing 172/506 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:28,875 DEBUG Processing 212/343 atomic regions from SNP 63504 to 64104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,040 DEBUG Processing 213/343 atomic regions from SNP 63804 to 64404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,052 DEBUG Processing 173/506 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,205 DEBUG Processing 214/343 atomic regions from SNP 64104 to 64704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,241 DEBUG Processing 174/506 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,361 DEBUG Processing 215/343 atomic regions from SNP 64404 to 65004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,420 DEBUG Processing 175/506 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,526 DEBUG Processing 216/343 atomic regions from SNP 64704 to 65304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,604 DEBUG Processing 176/506 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,687 DEBUG Processing 217/343 atomic regions from SNP 65004 to 65604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,793 DEBUG Processing 177/506 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:29,854 DEBUG Processing 218/343 atomic regions from SNP 65304 to 65904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:29,989 DEBUG Processing 178/506 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,019 DEBUG Processing 219/343 atomic regions from SNP 65604 to 66204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,185 DEBUG Processing 220/343 atomic regions from SNP 65904 to 66504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,193 DEBUG Processing 179/506 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,352 DEBUG Processing 221/343 atomic regions from SNP 66204 to 66804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,413 DEBUG Processing 180/506 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,515 DEBUG Processing 222/343 atomic regions from SNP 66504 to 67104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,631 DEBUG Processing 181/506 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:30,671 DEBUG Processing 223/343 atomic regions from SNP 66804 to 67404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,835 DEBUG Processing 224/343 atomic regions from SNP 67104 to 67704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:30,839 DEBUG Processing 182/506 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,004 DEBUG Processing 225/343 atomic regions from SNP 67404 to 68004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,032 DEBUG Processing 183/506 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,186 DEBUG Processing 226/343 atomic regions from SNP 67704 to 68304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,223 DEBUG Processing 184/506 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,379 DEBUG Processing 227/343 atomic regions from SNP 68004 to 68604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,427 DEBUG Processing 185/506 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,548 DEBUG Processing 228/343 atomic regions from SNP 68304 to 68904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,632 DEBUG Processing 186/506 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,711 DEBUG Processing 229/343 atomic regions from SNP 68604 to 69204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:31,828 DEBUG Processing 187/506 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:31,877 DEBUG Processing 230/343 atomic regions from SNP 68904 to 69504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,024 DEBUG Processing 188/506 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,048 DEBUG Processing 231/343 atomic regions from SNP 69204 to 69804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,208 DEBUG Processing 232/343 atomic regions from SNP 69504 to 70104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,217 DEBUG Processing 189/506 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,373 DEBUG Processing 233/343 atomic regions from SNP 69804 to 70404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,432 DEBUG Processing 190/506 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,536 DEBUG Processing 234/343 atomic regions from SNP 70104 to 70704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,634 DEBUG Processing 191/506 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,700 DEBUG Processing 235/343 atomic regions from SNP 70404 to 71004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:32,847 DEBUG Processing 192/506 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:32,859 DEBUG Processing 236/343 atomic regions from SNP 70704 to 71304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,037 DEBUG Processing 237/343 atomic regions from SNP 71004 to 71604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,058 DEBUG Processing 193/506 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,228 DEBUG Processing 238/343 atomic regions from SNP 71304 to 71904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,255 DEBUG Processing 194/506 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,384 DEBUG Processing 239/343 atomic regions from SNP 71604 to 72204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,440 DEBUG Processing 195/506 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,547 DEBUG Processing 240/343 atomic regions from SNP 71904 to 72504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,623 DEBUG Processing 196/506 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,736 DEBUG Processing 241/343 atomic regions from SNP 72204 to 72804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,807 DEBUG Processing 197/506 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:33,931 DEBUG Processing 242/343 atomic regions from SNP 72504 to 73104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:33,992 DEBUG Processing 198/506 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,109 DEBUG Processing 243/343 atomic regions from SNP 72804 to 73404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,182 DEBUG Processing 199/506 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,267 DEBUG Processing 244/343 atomic regions from SNP 73104 to 73704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,393 DEBUG Processing 200/506 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,431 DEBUG Processing 245/343 atomic regions from SNP 73404 to 74004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,595 DEBUG Processing 201/506 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,626 DEBUG Processing 246/343 atomic regions from SNP 73704 to 74304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,809 DEBUG Processing 202/506 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:34,815 DEBUG Processing 247/343 atomic regions from SNP 74004 to 74604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:34,979 DEBUG Processing 248/343 atomic regions from SNP 74304 to 74904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,004 DEBUG Processing 203/506 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,150 DEBUG Processing 249/343 atomic regions from SNP 74604 to 75204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,191 DEBUG Processing 204/506 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,335 DEBUG Processing 250/343 atomic regions from SNP 74904 to 75504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,383 DEBUG Processing 205/506 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,507 DEBUG Processing 251/343 atomic regions from SNP 75204 to 75804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,576 DEBUG Processing 206/506 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,679 DEBUG Processing 252/343 atomic regions from SNP 75504 to 76104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,758 DEBUG Processing 207/506 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:35,855 DEBUG Processing 253/343 atomic regions from SNP 75804 to 76404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:35,935 DEBUG Processing 208/506 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,042 DEBUG Processing 254/343 atomic regions from SNP 76104 to 76704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,116 DEBUG Processing 209/506 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,239 DEBUG Processing 255/343 atomic regions from SNP 76404 to 77004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,306 DEBUG Processing 210/506 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,427 DEBUG Processing 256/343 atomic regions from SNP 76704 to 77304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,502 DEBUG Processing 211/506 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,597 DEBUG Processing 257/343 atomic regions from SNP 77004 to 77604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,701 DEBUG Processing 212/506 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,772 DEBUG Processing 258/343 atomic regions from SNP 77304 to 77904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:36,894 DEBUG Processing 213/506 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:36,965 DEBUG Processing 259/343 atomic regions from SNP 77604 to 78204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,080 DEBUG Processing 214/506 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,138 DEBUG Processing 260/343 atomic regions from SNP 77904 to 78504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,267 DEBUG Processing 215/506 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,299 DEBUG Processing 261/343 atomic regions from SNP 78204 to 78804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,458 DEBUG Processing 216/506 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,465 DEBUG Processing 262/343 atomic regions from SNP 78504 to 79104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,633 DEBUG Processing 263/343 atomic regions from SNP 78804 to 79404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,650 DEBUG Processing 217/506 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,798 DEBUG Processing 264/343 atomic regions from SNP 79104 to 79704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:37,842 DEBUG Processing 218/506 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:37,964 DEBUG Processing 265/343 atomic regions from SNP 79404 to 80004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,034 DEBUG Processing 219/506 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,137 DEBUG Processing 266/343 atomic regions from SNP 79704 to 80304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,231 DEBUG Processing 220/506 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,305 DEBUG Processing 267/343 atomic regions from SNP 80004 to 80604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,423 DEBUG Processing 221/506 atomic regions from SNP 66220 to 66820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,483 DEBUG Processing 268/343 atomic regions from SNP 80304 to 80904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,607 DEBUG Processing 222/506 atomic regions from SNP 66520 to 67120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,651 DEBUG Processing 269/343 atomic regions from SNP 80604 to 81204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,798 DEBUG Processing 223/506 atomic regions from SNP 66820 to 67420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:38,817 DEBUG Processing 270/343 atomic regions from SNP 80904 to 81504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,991 DEBUG Processing 271/343 atomic regions from SNP 81204 to 81804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:38,998 DEBUG Processing 224/506 atomic regions from SNP 67120 to 67720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,167 DEBUG Processing 272/343 atomic regions from SNP 81504 to 82104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,198 DEBUG Processing 225/506 atomic regions from SNP 67420 to 68020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,340 DEBUG Processing 273/343 atomic regions from SNP 81804 to 82404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,392 DEBUG Processing 226/506 atomic regions from SNP 67720 to 68320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,512 DEBUG Processing 274/343 atomic regions from SNP 82104 to 82704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,588 DEBUG Processing 227/506 atomic regions from SNP 68020 to 68620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,681 DEBUG Processing 275/343 atomic regions from SNP 82404 to 83004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,787 DEBUG Processing 228/506 atomic regions from SNP 68320 to 68920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:39,852 DEBUG Processing 276/343 atomic regions from SNP 82704 to 83304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:39,983 DEBUG Processing 229/506 atomic regions from SNP 68620 to 69220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,026 DEBUG Processing 277/343 atomic regions from SNP 83004 to 83604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,180 DEBUG Processing 230/506 atomic regions from SNP 68920 to 69520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,200 DEBUG Processing 278/343 atomic regions from SNP 83304 to 83904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,371 DEBUG Processing 279/343 atomic regions from SNP 83604 to 84204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,372 DEBUG Processing 231/506 atomic regions from SNP 69220 to 69820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,542 DEBUG Processing 280/343 atomic regions from SNP 83904 to 84504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,568 DEBUG Processing 232/506 atomic regions from SNP 69520 to 70120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,715 DEBUG Processing 281/343 atomic regions from SNP 84204 to 84804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,765 DEBUG Processing 233/506 atomic regions from SNP 69820 to 70420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:40,884 DEBUG Processing 282/343 atomic regions from SNP 84504 to 85104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:40,956 DEBUG Processing 234/506 atomic regions from SNP 70120 to 70720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,055 DEBUG Processing 283/343 atomic regions from SNP 84804 to 85404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,146 DEBUG Processing 235/506 atomic regions from SNP 70420 to 71020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,227 DEBUG Processing 284/343 atomic regions from SNP 85104 to 85704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,339 DEBUG Processing 236/506 atomic regions from SNP 70720 to 71320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,394 DEBUG Processing 285/343 atomic regions from SNP 85404 to 86004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,536 DEBUG Processing 237/506 atomic regions from SNP 71020 to 71620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,564 DEBUG Processing 286/343 atomic regions from SNP 85704 to 86304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,729 DEBUG Processing 238/506 atomic regions from SNP 71320 to 71920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:41,736 DEBUG Processing 287/343 atomic regions from SNP 86004 to 86604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,910 DEBUG Processing 288/343 atomic regions from SNP 86304 to 86904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:41,925 DEBUG Processing 239/506 atomic regions from SNP 71620 to 72220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,086 DEBUG Processing 289/343 atomic regions from SNP 86604 to 87204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,125 DEBUG Processing 240/506 atomic regions from SNP 71920 to 72520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,258 DEBUG Processing 290/343 atomic regions from SNP 86904 to 87504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,322 DEBUG Processing 241/506 atomic regions from SNP 72220 to 72820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,427 DEBUG Processing 291/343 atomic regions from SNP 87204 to 87804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,514 DEBUG Processing 242/506 atomic regions from SNP 72520 to 73120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,598 DEBUG Processing 292/343 atomic regions from SNP 87504 to 88104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,772 DEBUG Processing 243/506 atomic regions from SNP 72820 to 73420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:42,840 DEBUG Processing 293/343 atomic regions from SNP 87804 to 88404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:42,977 DEBUG Processing 244/506 atomic regions from SNP 73120 to 73720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,018 DEBUG Processing 294/343 atomic regions from SNP 88104 to 88704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,169 DEBUG Processing 245/506 atomic regions from SNP 73420 to 74020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,216 DEBUG Processing 295/343 atomic regions from SNP 88404 to 89004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,365 DEBUG Processing 246/506 atomic regions from SNP 73720 to 74320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,408 DEBUG Processing 296/343 atomic regions from SNP 88704 to 89304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,565 DEBUG Processing 247/506 atomic regions from SNP 74020 to 74620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,582 DEBUG Processing 297/343 atomic regions from SNP 89004 to 89604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,766 DEBUG Processing 298/343 atomic regions from SNP 89304 to 89904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,773 DEBUG Processing 248/506 atomic regions from SNP 74320 to 74920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:43,968 DEBUG Processing 299/343 atomic regions from SNP 89604 to 90204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:43,983 DEBUG Processing 249/506 atomic regions from SNP 74620 to 75220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,146 DEBUG Processing 300/343 atomic regions from SNP 89904 to 90504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,201 DEBUG Processing 250/506 atomic regions from SNP 74920 to 75520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,322 DEBUG Processing 301/343 atomic regions from SNP 90204 to 90804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,405 DEBUG Processing 251/506 atomic regions from SNP 75220 to 75820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,493 DEBUG Processing 302/343 atomic regions from SNP 90504 to 91104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,600 DEBUG Processing 252/506 atomic regions from SNP 75520 to 76120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,668 DEBUG Processing 303/343 atomic regions from SNP 90804 to 91404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,794 DEBUG Processing 253/506 atomic regions from SNP 75820 to 76420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:44,841 DEBUG Processing 304/343 atomic regions from SNP 91104 to 91704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:44,989 DEBUG Processing 254/506 atomic regions from SNP 76120 to 76720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,011 DEBUG Processing 305/343 atomic regions from SNP 91404 to 92004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,213 DEBUG Processing 306/343 atomic regions from SNP 91704 to 92304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,219 DEBUG Processing 255/506 atomic regions from SNP 76420 to 77020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,386 DEBUG Processing 307/343 atomic regions from SNP 92004 to 92604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,416 DEBUG Processing 256/506 atomic regions from SNP 76720 to 77320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,559 DEBUG Processing 308/343 atomic regions from SNP 92304 to 92904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,615 DEBUG Processing 257/506 atomic regions from SNP 77020 to 77620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,733 DEBUG Processing 309/343 atomic regions from SNP 92604 to 93204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:45,815 DEBUG Processing 258/506 atomic regions from SNP 77320 to 77920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:45,912 DEBUG Processing 310/343 atomic regions from SNP 92904 to 93504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,020 DEBUG Processing 259/506 atomic regions from SNP 77620 to 78220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,088 DEBUG Processing 311/343 atomic regions from SNP 93204 to 93804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,219 DEBUG Processing 260/506 atomic regions from SNP 77920 to 78520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,268 DEBUG Processing 312/343 atomic regions from SNP 93504 to 94104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,412 DEBUG Processing 261/506 atomic regions from SNP 78220 to 78820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,446 DEBUG Processing 313/343 atomic regions from SNP 93804 to 94404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,614 DEBUG Processing 262/506 atomic regions from SNP 78520 to 79120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,624 DEBUG Processing 314/343 atomic regions from SNP 94104 to 94704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,803 DEBUG Processing 315/343 atomic regions from SNP 94404 to 95004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:46,815 DEBUG Processing 263/506 atomic regions from SNP 78820 to 79420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:46,974 DEBUG Processing 316/343 atomic regions from SNP 94704 to 95304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,009 DEBUG Processing 264/506 atomic regions from SNP 79120 to 79720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,149 DEBUG Processing 317/343 atomic regions from SNP 95004 to 95604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,207 DEBUG Processing 265/506 atomic regions from SNP 79420 to 80020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,324 DEBUG Processing 318/343 atomic regions from SNP 95304 to 95904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,405 DEBUG Processing 266/506 atomic regions from SNP 79720 to 80320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,489 DEBUG Processing 319/343 atomic regions from SNP 95604 to 96204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,606 DEBUG Processing 267/506 atomic regions from SNP 80020 to 80620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,665 DEBUG Processing 320/343 atomic regions from SNP 95904 to 96504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,802 DEBUG Processing 268/506 atomic regions from SNP 80320 to 80920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:47,841 DEBUG Processing 321/343 atomic regions from SNP 96204 to 96804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:47,994 DEBUG Processing 269/506 atomic regions from SNP 80620 to 81220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,012 DEBUG Processing 322/343 atomic regions from SNP 96504 to 97104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,191 DEBUG Processing 323/343 atomic regions from SNP 96804 to 97404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,196 DEBUG Processing 270/506 atomic regions from SNP 80920 to 81520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,372 DEBUG Processing 324/343 atomic regions from SNP 97104 to 97704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,400 DEBUG Processing 271/506 atomic regions from SNP 81220 to 81820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,545 DEBUG Processing 325/343 atomic regions from SNP 97404 to 98004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,593 DEBUG Processing 272/506 atomic regions from SNP 81520 to 82120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,718 DEBUG Processing 326/343 atomic regions from SNP 97704 to 98304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,792 DEBUG Processing 273/506 atomic regions from SNP 81820 to 82420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:48,897 DEBUG Processing 327/343 atomic regions from SNP 98004 to 98604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:48,996 DEBUG Processing 274/506 atomic regions from SNP 82120 to 82720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,073 DEBUG Processing 328/343 atomic regions from SNP 98304 to 98904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,198 DEBUG Processing 275/506 atomic regions from SNP 82420 to 83020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,253 DEBUG Processing 329/343 atomic regions from SNP 98604 to 99204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,393 DEBUG Processing 276/506 atomic regions from SNP 82720 to 83320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,425 DEBUG Processing 330/343 atomic regions from SNP 98904 to 99504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,589 DEBUG Processing 277/506 atomic regions from SNP 83020 to 83620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,601 DEBUG Processing 331/343 atomic regions from SNP 99204 to 99804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,776 DEBUG Processing 332/343 atomic regions from SNP 99504 to 100104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,787 DEBUG Processing 278/506 atomic regions from SNP 83320 to 83920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:49,947 DEBUG Processing 333/343 atomic regions from SNP 99804 to 100404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:49,981 DEBUG Processing 279/506 atomic regions from SNP 83620 to 84220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,123 DEBUG Processing 334/343 atomic regions from SNP 100104 to 100704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,178 DEBUG Processing 280/506 atomic regions from SNP 83920 to 84520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,306 DEBUG Processing 335/343 atomic regions from SNP 100404 to 101004 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,386 DEBUG Processing 281/506 atomic regions from SNP 84220 to 84820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,482 DEBUG Processing 336/343 atomic regions from SNP 100704 to 101304 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,583 DEBUG Processing 282/506 atomic regions from SNP 84520 to 85120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,657 DEBUG Processing 337/343 atomic regions from SNP 101004 to 101604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,780 DEBUG Processing 283/506 atomic regions from SNP 84820 to 85420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:50,832 DEBUG Processing 338/343 atomic regions from SNP 101304 to 101904 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:50,975 DEBUG Processing 284/506 atomic regions from SNP 85120 to 85720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,007 DEBUG Processing 339/343 atomic regions from SNP 101604 to 102204 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,180 DEBUG Processing 285/506 atomic regions from SNP 85420 to 86020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,189 DEBUG Processing 340/343 atomic regions from SNP 101904 to 102504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,364 DEBUG Processing 341/343 atomic regions from SNP 102204 to 102804 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,379 DEBUG Processing 286/506 atomic regions from SNP 85720 to 86320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,559 DEBUG Processing 342/343 atomic regions from SNP 102504 to 103104 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,581 DEBUG Processing 287/506 atomic regions from SNP 86020 to 86620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,736 DEBUG Processing 343/343 atomic regions from SNP 102804 to 103404 for chr19 (subchromosome 1 of 1). 2025-01-31 09:53:51,780 DEBUG Processing 288/506 atomic regions from SNP 86320 to 86920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:51,871 DEBUG Unique SNPs positions in subchromosome 1: 103405 2025-01-31 09:53:51,986 DEBUG Processing 289/506 atomic regions from SNP 86620 to 87220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,184 DEBUG Processing 290/506 atomic regions from SNP 86920 to 87520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,378 DEBUG Processing 291/506 atomic regions from SNP 87220 to 87820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,577 DEBUG Processing 292/506 atomic regions from SNP 87520 to 88120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,772 DEBUG Processing 293/506 atomic regions from SNP 87820 to 88420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:52,966 DEBUG Processing 294/506 atomic regions from SNP 88120 to 88720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,163 DEBUG Processing 295/506 atomic regions from SNP 88420 to 89020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,332 DEBUG Subchromosome time: 70.83856718894094, subchromosome SNPs: 103405 2025-01-31 09:53:53,333 DEBUG Estimated BADs: [4.56, 1.14, 7.98, 2.28, 0.57, 6.84, 1.14, 0.38, 1.14, 0.29, 1.14, 2.28, 3.42, 1.14, 0.19, 1.14] SNP counts: [7979, 1829, 605, 4870, 19236, 195, 3617, 4199, 10552, 3299, 11370, 4545, 5112, 4192, 3597, 18208] SNP IDs counts: [7979, 1829, 605, 4870, 19236, 195, 3617, 4199, 10552, 3299, 11370, 4545, 5112, 4192, 3597, 18208] Critical gap: 415511bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 7.50Mbp, 8.71Mbp, 9.03Mbp, 12.03Mbp, 23.10Mbp, 23.21Mbp, 25.15Mbp, 27.51Mbp, 33.23Mbp, 35.31Mbp, 41.79Mbp, 44.25Mbp, 46.96Mbp, 49.24Mbp, 51.41Mbp, 61.43Mbp] 2025-01-31 09:53:53,333 DEBUG chr19 time: 70.83903388201725 s 2025-01-31 09:53:53,359 DEBUG Processing 296/506 atomic regions from SNP 88720 to 89320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,393 DEBUG chr19: Fitting background model for 16 segments 2025-01-31 09:53:53,559 DEBUG Processing 297/506 atomic regions from SNP 89020 to 89620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,755 DEBUG Processing 298/506 atomic regions from SNP 89320 to 89920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:53,947 DEBUG Processing 299/506 atomic regions from SNP 89620 to 90220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,141 DEBUG Processing 300/506 atomic regions from SNP 89920 to 90520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,336 DEBUG Processing 301/506 atomic regions from SNP 90220 to 90820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,528 DEBUG Processing 302/506 atomic regions from SNP 90520 to 91120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,720 DEBUG Processing 303/506 atomic regions from SNP 90820 to 91420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:54,907 DEBUG Processing 304/506 atomic regions from SNP 91120 to 91720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,097 DEBUG Processing 305/506 atomic regions from SNP 91420 to 92020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,292 DEBUG Processing 306/506 atomic regions from SNP 91720 to 92320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,491 DEBUG Processing 307/506 atomic regions from SNP 92020 to 92620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,702 DEBUG Processing 308/506 atomic regions from SNP 92320 to 92920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:55,920 DEBUG Processing 309/506 atomic regions from SNP 92620 to 93220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,125 DEBUG Processing 310/506 atomic regions from SNP 92920 to 93520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,319 DEBUG Processing 311/506 atomic regions from SNP 93220 to 93820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,514 DEBUG Processing 312/506 atomic regions from SNP 93520 to 94120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,706 DEBUG Processing 313/506 atomic regions from SNP 93820 to 94420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:56,891 DEBUG Processing 314/506 atomic regions from SNP 94120 to 94720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,081 DEBUG Processing 315/506 atomic regions from SNP 94420 to 95020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,270 DEBUG Processing 316/506 atomic regions from SNP 94720 to 95320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,458 DEBUG Processing 317/506 atomic regions from SNP 95020 to 95620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,656 DEBUG Processing 318/506 atomic regions from SNP 95320 to 95920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:57,843 DEBUG Processing 319/506 atomic regions from SNP 95620 to 96220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,029 DEBUG Processing 320/506 atomic regions from SNP 95920 to 96520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,216 DEBUG Processing 321/506 atomic regions from SNP 96220 to 96820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,406 DEBUG Processing 322/506 atomic regions from SNP 96520 to 97120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,588 DEBUG Processing 323/506 atomic regions from SNP 96820 to 97420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,774 DEBUG Processing 324/506 atomic regions from SNP 97120 to 97720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:58,958 DEBUG Processing 325/506 atomic regions from SNP 97420 to 98020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,142 DEBUG Processing 326/506 atomic regions from SNP 97720 to 98320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,336 DEBUG Processing 327/506 atomic regions from SNP 98020 to 98620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,516 DEBUG Processing 328/506 atomic regions from SNP 98320 to 98920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,698 DEBUG Processing 329/506 atomic regions from SNP 98620 to 99220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:53:59,884 DEBUG Processing 330/506 atomic regions from SNP 98920 to 99520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,104 DEBUG Processing 331/506 atomic regions from SNP 99220 to 99820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,408 DEBUG Processing 332/506 atomic regions from SNP 99520 to 100120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,609 DEBUG Processing 333/506 atomic regions from SNP 99820 to 100420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,799 DEBUG Processing 334/506 atomic regions from SNP 100120 to 100720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:00,993 DEBUG Processing 335/506 atomic regions from SNP 100420 to 101020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,199 DEBUG Processing 336/506 atomic regions from SNP 100720 to 101320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,424 DEBUG Processing 337/506 atomic regions from SNP 101020 to 101620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,637 DEBUG Processing 338/506 atomic regions from SNP 101320 to 101920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:01,836 DEBUG Processing 339/506 atomic regions from SNP 101620 to 102220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,026 DEBUG Processing 340/506 atomic regions from SNP 101920 to 102520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,206 DEBUG Processing 341/506 atomic regions from SNP 102220 to 102820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,386 DEBUG Processing 342/506 atomic regions from SNP 102520 to 103120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,565 DEBUG Processing 343/506 atomic regions from SNP 102820 to 103420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,742 DEBUG Processing 344/506 atomic regions from SNP 103120 to 103720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:02,917 DEBUG Processing 345/506 atomic regions from SNP 103420 to 104020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,096 DEBUG Processing 346/506 atomic regions from SNP 103720 to 104320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,281 DEBUG Processing 347/506 atomic regions from SNP 104020 to 104620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,457 DEBUG Processing 348/506 atomic regions from SNP 104320 to 104920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,637 DEBUG Processing 349/506 atomic regions from SNP 104620 to 105220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:03,848 DEBUG Processing 350/506 atomic regions from SNP 104920 to 105520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,061 DEBUG Processing 351/506 atomic regions from SNP 105220 to 105820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,248 DEBUG Processing 352/506 atomic regions from SNP 105520 to 106120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,436 DEBUG Processing 353/506 atomic regions from SNP 105820 to 106420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,613 DEBUG Processing 354/506 atomic regions from SNP 106120 to 106720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:04,823 DEBUG Processing 355/506 atomic regions from SNP 106420 to 107020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,023 DEBUG Processing 356/506 atomic regions from SNP 106720 to 107320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,209 DEBUG Processing 357/506 atomic regions from SNP 107020 to 107620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,389 DEBUG Processing 358/506 atomic regions from SNP 107320 to 107920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,574 DEBUG Processing 359/506 atomic regions from SNP 107620 to 108220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:05,868 DEBUG Processing 360/506 atomic regions from SNP 107920 to 108520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,188 DEBUG Processing 361/506 atomic regions from SNP 108220 to 108820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,374 DEBUG Processing 362/506 atomic regions from SNP 108520 to 109120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,557 DEBUG Processing 363/506 atomic regions from SNP 108820 to 109420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,749 DEBUG Processing 364/506 atomic regions from SNP 109120 to 109720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:06,931 DEBUG Processing 365/506 atomic regions from SNP 109420 to 110020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,106 DEBUG Processing 366/506 atomic regions from SNP 109720 to 110320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,288 DEBUG Processing 367/506 atomic regions from SNP 110020 to 110620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,483 DEBUG Processing 368/506 atomic regions from SNP 110320 to 110920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,670 DEBUG Processing 369/506 atomic regions from SNP 110620 to 111220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:07,874 DEBUG Processing 370/506 atomic regions from SNP 110920 to 111520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,068 DEBUG Processing 371/506 atomic regions from SNP 111220 to 111820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,251 DEBUG Processing 372/506 atomic regions from SNP 111520 to 112120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,445 DEBUG Processing 373/506 atomic regions from SNP 111820 to 112420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,641 DEBUG Processing 374/506 atomic regions from SNP 112120 to 112720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:08,841 DEBUG Processing 375/506 atomic regions from SNP 112420 to 113020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,031 DEBUG Processing 376/506 atomic regions from SNP 112720 to 113320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,209 DEBUG Processing 377/506 atomic regions from SNP 113020 to 113620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,393 DEBUG Processing 378/506 atomic regions from SNP 113320 to 113920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,578 DEBUG Processing 379/506 atomic regions from SNP 113620 to 114220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,759 DEBUG Processing 380/506 atomic regions from SNP 113920 to 114520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:09,938 DEBUG Processing 381/506 atomic regions from SNP 114220 to 114820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,131 DEBUG Processing 382/506 atomic regions from SNP 114520 to 115120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,312 DEBUG Processing 383/506 atomic regions from SNP 114820 to 115420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,484 DEBUG Processing 384/506 atomic regions from SNP 115120 to 115720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,657 DEBUG Processing 385/506 atomic regions from SNP 115420 to 116020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:10,842 DEBUG Processing 386/506 atomic regions from SNP 115720 to 116320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,019 DEBUG Processing 387/506 atomic regions from SNP 116020 to 116620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,193 DEBUG Processing 388/506 atomic regions from SNP 116320 to 116920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,371 DEBUG Processing 389/506 atomic regions from SNP 116620 to 117220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,559 DEBUG Processing 390/506 atomic regions from SNP 116920 to 117520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,739 DEBUG Processing 391/506 atomic regions from SNP 117220 to 117820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:11,939 DEBUG Processing 392/506 atomic regions from SNP 117520 to 118120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,132 DEBUG Processing 393/506 atomic regions from SNP 117820 to 118420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,311 DEBUG Processing 394/506 atomic regions from SNP 118120 to 118720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,494 DEBUG Processing 395/506 atomic regions from SNP 118420 to 119020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,690 DEBUG Processing 396/506 atomic regions from SNP 118720 to 119320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:12,870 DEBUG Processing 397/506 atomic regions from SNP 119020 to 119620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,056 DEBUG Processing 398/506 atomic regions from SNP 119320 to 119920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,249 DEBUG Processing 399/506 atomic regions from SNP 119620 to 120220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,433 DEBUG Processing 400/506 atomic regions from SNP 119920 to 120520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,616 DEBUG Processing 401/506 atomic regions from SNP 120220 to 120820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,794 DEBUG Processing 402/506 atomic regions from SNP 120520 to 121120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:13,976 DEBUG Processing 403/506 atomic regions from SNP 120820 to 121420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,154 DEBUG Processing 404/506 atomic regions from SNP 121120 to 121720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,337 DEBUG Processing 405/506 atomic regions from SNP 121420 to 122020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,518 DEBUG Processing 406/506 atomic regions from SNP 121720 to 122320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,699 DEBUG Processing 407/506 atomic regions from SNP 122020 to 122620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:14,880 DEBUG Processing 408/506 atomic regions from SNP 122320 to 122920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,060 DEBUG Processing 409/506 atomic regions from SNP 122620 to 123220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,242 DEBUG Processing 410/506 atomic regions from SNP 122920 to 123520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,437 DEBUG Processing 411/506 atomic regions from SNP 123220 to 123820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,610 DEBUG Processing 412/506 atomic regions from SNP 123520 to 124120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,779 DEBUG Processing 413/506 atomic regions from SNP 123820 to 124420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:15,952 DEBUG Processing 414/506 atomic regions from SNP 124120 to 124720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,134 DEBUG Processing 415/506 atomic regions from SNP 124420 to 125020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,318 DEBUG Processing 416/506 atomic regions from SNP 124720 to 125320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,497 DEBUG Processing 417/506 atomic regions from SNP 125020 to 125620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,674 DEBUG Processing 418/506 atomic regions from SNP 125320 to 125920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:16,846 DEBUG Processing 419/506 atomic regions from SNP 125620 to 126220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,020 DEBUG Processing 420/506 atomic regions from SNP 125920 to 126520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,193 DEBUG Processing 421/506 atomic regions from SNP 126220 to 126820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,372 DEBUG Processing 422/506 atomic regions from SNP 126520 to 127120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,551 DEBUG Processing 423/506 atomic regions from SNP 126820 to 127420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,732 DEBUG Processing 424/506 atomic regions from SNP 127120 to 127720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:17,906 DEBUG Processing 425/506 atomic regions from SNP 127420 to 128020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,079 DEBUG Processing 426/506 atomic regions from SNP 127720 to 128320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,260 DEBUG Processing 427/506 atomic regions from SNP 128020 to 128620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,437 DEBUG Processing 428/506 atomic regions from SNP 128320 to 128920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,615 DEBUG Processing 429/506 atomic regions from SNP 128620 to 129220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,792 DEBUG Processing 430/506 atomic regions from SNP 128920 to 129520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:18,973 DEBUG Processing 431/506 atomic regions from SNP 129220 to 129820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,151 DEBUG Processing 432/506 atomic regions from SNP 129520 to 130120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,324 DEBUG Processing 433/506 atomic regions from SNP 129820 to 130420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,497 DEBUG Processing 434/506 atomic regions from SNP 130120 to 130720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,692 DEBUG Processing 435/506 atomic regions from SNP 130420 to 131020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:19,878 DEBUG Processing 436/506 atomic regions from SNP 130720 to 131320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,082 DEBUG Processing 437/506 atomic regions from SNP 131020 to 131620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,267 DEBUG Processing 438/506 atomic regions from SNP 131320 to 131920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,441 DEBUG Processing 439/506 atomic regions from SNP 131620 to 132220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,612 DEBUG Processing 440/506 atomic regions from SNP 131920 to 132520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,784 DEBUG Processing 441/506 atomic regions from SNP 132220 to 132820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:20,956 DEBUG Processing 442/506 atomic regions from SNP 132520 to 133120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,135 DEBUG Processing 443/506 atomic regions from SNP 132820 to 133420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,310 DEBUG Processing 444/506 atomic regions from SNP 133120 to 133720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,488 DEBUG Processing 445/506 atomic regions from SNP 133420 to 134020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,665 DEBUG Processing 446/506 atomic regions from SNP 133720 to 134320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:21,837 DEBUG Processing 447/506 atomic regions from SNP 134020 to 134620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,006 DEBUG Processing 448/506 atomic regions from SNP 134320 to 134920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,200 DEBUG Processing 449/506 atomic regions from SNP 134620 to 135220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,394 DEBUG Processing 450/506 atomic regions from SNP 134920 to 135520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,569 DEBUG Processing 451/506 atomic regions from SNP 135220 to 135820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,752 DEBUG Processing 452/506 atomic regions from SNP 135520 to 136120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:22,930 DEBUG Processing 453/506 atomic regions from SNP 135820 to 136420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,107 DEBUG Processing 454/506 atomic regions from SNP 136120 to 136720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,281 DEBUG Processing 455/506 atomic regions from SNP 136420 to 137020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,452 DEBUG Processing 456/506 atomic regions from SNP 136720 to 137320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,626 DEBUG Processing 457/506 atomic regions from SNP 137020 to 137620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,797 DEBUG Processing 458/506 atomic regions from SNP 137320 to 137920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:23,971 DEBUG Processing 459/506 atomic regions from SNP 137620 to 138220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,150 DEBUG Processing 460/506 atomic regions from SNP 137920 to 138520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,322 DEBUG Processing 461/506 atomic regions from SNP 138220 to 138820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,495 DEBUG Processing 462/506 atomic regions from SNP 138520 to 139120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,671 DEBUG Processing 463/506 atomic regions from SNP 138820 to 139420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:24,855 DEBUG Processing 464/506 atomic regions from SNP 139120 to 139720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,031 DEBUG Processing 465/506 atomic regions from SNP 139420 to 140020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,201 DEBUG Processing 466/506 atomic regions from SNP 139720 to 140320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,373 DEBUG Processing 467/506 atomic regions from SNP 140020 to 140620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,551 DEBUG Processing 468/506 atomic regions from SNP 140320 to 140920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,728 DEBUG Processing 469/506 atomic regions from SNP 140620 to 141220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:25,907 DEBUG Processing 470/506 atomic regions from SNP 140920 to 141520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,088 DEBUG Processing 471/506 atomic regions from SNP 141220 to 141820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,267 DEBUG Processing 472/506 atomic regions from SNP 141520 to 142120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,443 DEBUG Processing 473/506 atomic regions from SNP 141820 to 142420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,619 DEBUG Processing 474/506 atomic regions from SNP 142120 to 142720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,796 DEBUG Processing 475/506 atomic regions from SNP 142420 to 143020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:26,969 DEBUG Processing 476/506 atomic regions from SNP 142720 to 143320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,146 DEBUG Processing 477/506 atomic regions from SNP 143020 to 143620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,331 DEBUG Processing 478/506 atomic regions from SNP 143320 to 143920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,503 DEBUG Processing 479/506 atomic regions from SNP 143620 to 144220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,675 DEBUG Processing 480/506 atomic regions from SNP 143920 to 144520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:27,848 DEBUG Processing 481/506 atomic regions from SNP 144220 to 144820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,030 DEBUG Processing 482/506 atomic regions from SNP 144520 to 145120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,203 DEBUG Processing 483/506 atomic regions from SNP 144820 to 145420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,382 DEBUG Processing 484/506 atomic regions from SNP 145120 to 145720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,559 DEBUG Processing 485/506 atomic regions from SNP 145420 to 146020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,735 DEBUG Processing 486/506 atomic regions from SNP 145720 to 146320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:28,907 DEBUG Processing 487/506 atomic regions from SNP 146020 to 146620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,078 DEBUG Processing 488/506 atomic regions from SNP 146320 to 146920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,252 DEBUG Processing 489/506 atomic regions from SNP 146620 to 147220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,434 DEBUG Processing 490/506 atomic regions from SNP 146920 to 147520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,618 DEBUG Processing 491/506 atomic regions from SNP 147220 to 147820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,785 DEBUG Processing 492/506 atomic regions from SNP 147520 to 148120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:29,957 DEBUG Processing 493/506 atomic regions from SNP 147820 to 148420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,134 DEBUG Processing 494/506 atomic regions from SNP 148120 to 148720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,311 DEBUG Processing 495/506 atomic regions from SNP 148420 to 149020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,486 DEBUG Processing 496/506 atomic regions from SNP 148720 to 149320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,660 DEBUG Processing 497/506 atomic regions from SNP 149020 to 149620 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:30,836 DEBUG Processing 498/506 atomic regions from SNP 149320 to 149920 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,006 DEBUG Processing 499/506 atomic regions from SNP 149620 to 150220 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,174 DEBUG Processing 500/506 atomic regions from SNP 149920 to 150520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,344 DEBUG Processing 501/506 atomic regions from SNP 150220 to 150820 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,514 DEBUG Processing 502/506 atomic regions from SNP 150520 to 151120 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,682 DEBUG Processing 503/506 atomic regions from SNP 150820 to 151420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:31,848 DEBUG Processing 504/506 atomic regions from SNP 151120 to 151720 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,017 DEBUG Processing 505/506 atomic regions from SNP 151420 to 152020 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,184 DEBUG Processing 506/506 atomic regions from SNP 151720 to 152320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:54:32,291 DEBUG Unique SNPs positions in subchromosome 1: 152321 2025-01-31 09:54:32,876 DEBUG Subchromosome time: 113.68714092404116, subchromosome SNPs: 152321 2025-01-31 09:54:32,876 DEBUG Estimated BADs: [0.90, 0.45, 1.79, 0.90, 3.58, 0.90, 3.58, 0.90, 1.79, 0.90, 0.45] SNP counts: [36524, 11909, 14335, 36340, 2319, 10104, 991, 10235, 8287, 12232, 9045] SNP IDs counts: [36524, 11909, 14335, 36340, 2319, 10104, 991, 10235, 8287, 12232, 9045] Critical gap: 515308bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 24.53Mbp, 31.61Mbp, 39.47Mbp, 60.48Mbp, 61.70Mbp, 67.19Mbp, 67.71Mbp, 73.57Mbp, 78.11Mbp, 84.85Mbp, 90.70Mbp] 2025-01-31 09:54:32,876 DEBUG chr18 time: 113.68756622704677 s 2025-01-31 09:54:32,953 DEBUG chr18: Fitting background model for 11 segments 2025-01-31 09:54:38,928 DEBUG Results of fit_background_model emitted. 2025-01-31 09:54:39,048 INFO Signal to noise fit: SPOT=0.34±0.13 2025-01-31 09:54:39,054 INFO Final SPOT score: 0.34±0.13. Refitted 0 segments. 2025-01-31 09:54:39,106 INFO Estimating per-bp parameters of background model 2025-01-31 09:54:39,114 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:54:39,114 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:54:44,327 DEBUG chr5:3005500-5941251: Successfully fit background model for 2,576,296 bp. Use segment r for 0 bp 2025-01-31 09:54:45,536 DEBUG chr4:3050000-8644751: Successfully fit background model for 4,723,544 bp. Use segment r for 113 bp 2025-01-31 09:54:45,782 DEBUG chr2:3051000-7624251: Successfully fit background model for 4,278,180 bp. Use segment r for 0 bp 2025-01-31 09:54:46,122 DEBUG chrX:3055000-7563251: Successfully fit background model for 2,005,775 bp. Use segment r for 11,096 bp 2025-01-31 09:54:46,181 DEBUG chrX:7563251-7983251: Successfully fit background model for 410,367 bp. Use segment r for 0 bp 2025-01-31 09:54:46,644 DEBUG chr1:3000500-9540001: Successfully fit background model for 5,696,417 bp. Use segment r for 0 bp 2025-01-31 09:54:46,699 DEBUG chr1:9540001-9890251: Successfully fit background model for 336,709 bp. Use segment r for 0 bp 2025-01-31 09:54:46,954 DEBUG chrX:7983251-14780751: Successfully fit background model for 5,965,941 bp. Use segment r for 0 bp 2025-01-31 09:54:47,006 DEBUG chr5:5941251-20871251: Successfully fit background model for 11,885,238 bp. Use segment r for 14,116 bp 2025-01-31 09:54:47,198 DEBUG chr4:8644751-17265251: Successfully fit background model for 7,721,172 bp. Use segment r for 9,989 bp 2025-01-31 09:54:47,215 DEBUG chr3:3000000-19147751: Successfully fit background model for 13,804,155 bp. Use segment r for 30,993 bp 2025-01-31 09:54:47,277 DEBUG chr5:20871251-23415751: Successfully fit background model for 2,323,674 bp. Use segment r for 0 bp 2025-01-31 09:54:47,340 DEBUG chr3:19147751-20034251: Successfully fit background model for 814,235 bp. Use segment r for 0 bp 2025-01-31 09:54:47,494 DEBUG chr5:23415751-25538751: Successfully fit background model for 2,022,106 bp. Use segment r for 0 bp 2025-01-31 09:54:47,805 DEBUG chr2:7624251-18019251: Successfully fit background model for 9,412,458 bp. Use segment r for 5,957 bp 2025-01-31 09:54:48,235 DEBUG chr5:25538751-30456751: Successfully fit background model for 4,366,400 bp. Use segment r for 1,096 bp 2025-01-31 09:54:48,577 DEBUG chr2:18019251-24915251: Successfully fit background model for 6,146,068 bp. Use segment r for 0 bp 2025-01-31 09:54:48,702 DEBUG chr3:20034251-28353751: Successfully fit background model for 7,358,555 bp. Use segment r for 8,599 bp 2025-01-31 09:54:48,825 DEBUG chr5:30456751-36573251: Successfully fit background model for 5,866,773 bp. Use segment r for 0 bp 2025-01-31 09:54:49,094 DEBUG chrX:14780751-26917001: Successfully fit background model for 8,582,395 bp. Use segment r for 6,297 bp 2025-01-31 09:54:49,215 DEBUG chr3:28353751-33838751: Successfully fit background model for 4,985,212 bp. Use segment r for 0 bp 2025-01-31 09:54:49,305 DEBUG chr5:36573251-39929251: Successfully fit background model for 3,129,138 bp. Use segment r for 3,631 bp 2025-01-31 09:54:49,501 DEBUG chr2:24915251-32845751: Successfully fit background model for 7,690,120 bp. Use segment r for 0 bp 2025-01-31 09:54:49,853 DEBUG chr2:32845751-36304251: Successfully fit background model for 3,371,153 bp. Use segment r for 0 bp 2025-01-31 09:54:50,076 DEBUG chr4:17265251-32579251: Successfully fit background model for 13,587,696 bp. Use segment r for 19,481 bp 2025-01-31 09:54:50,178 DEBUG chr4:32579251-33241251: Successfully fit background model for 639,799 bp. Use segment r for 0 bp 2025-01-31 09:54:50,218 DEBUG chr2:36304251-39697751: Successfully fit background model for 3,058,046 bp. Use segment r for 0 bp 2025-01-31 09:54:50,412 DEBUG chrX:31133000-39335751: Successfully fit background model for 3,166,180 bp. Use segment r for 2,064 bp 2025-01-31 09:54:50,543 DEBUG chr2:39697751-42920751: Successfully fit background model for 2,935,620 bp. Use segment r for 0 bp 2025-01-31 09:54:51,228 DEBUG chr1:9890251-33449251: Successfully fit background model for 21,053,636 bp. Use segment r for 92 bp 2025-01-31 09:54:51,303 DEBUG chr4:33241251-40131751: Successfully fit background model for 6,190,079 bp. Use segment r for 2,283 bp 2025-01-31 09:54:51,494 DEBUG chr4:40131751-41857501: Successfully fit background model for 1,565,355 bp. Use segment r for 0 bp 2025-01-31 09:54:51,544 DEBUG chr4:42724000-43059751: Successfully fit background model for 261,675 bp. Use segment r for 0 bp 2025-01-31 09:54:51,974 DEBUG chr1:33449251-39514251: Successfully fit background model for 5,791,413 bp. Use segment r for 0 bp 2025-01-31 09:54:52,051 DEBUG chr5:39929251-55440251: Successfully fit background model for 14,221,185 bp. Use segment r for 365 bp 2025-01-31 09:54:52,161 DEBUG chr4:43059751-48798001: Successfully fit background model for 5,516,246 bp. Use segment r for 0 bp 2025-01-31 09:54:52,194 DEBUG chr3:33838751-51147751: Successfully fit background model for 15,547,518 bp. Use segment r for 52,598 bp 2025-01-31 09:54:52,280 DEBUG chr3:51147751-51703251: Successfully fit background model for 534,634 bp. Use segment r for 0 bp 2025-01-31 09:54:52,433 DEBUG chr1:39514251-44169751: Successfully fit background model for 4,452,651 bp. Use segment r for 0 bp 2025-01-31 09:54:52,556 DEBUG chr4:48798001-52694251: Successfully fit background model for 3,424,192 bp. Use segment r for 0 bp 2025-01-31 09:54:53,047 DEBUG chr5:55440251-62164501: Successfully fit background model for 5,944,519 bp. Use segment r for 256 bp 2025-01-31 09:54:53,342 DEBUG chr1:44169751-52097251: Successfully fit background model for 6,894,820 bp. Use segment r for 0 bp 2025-01-31 09:54:53,474 DEBUG chr1:52097251-53140251: Successfully fit background model for 946,592 bp. Use segment r for 0 bp 2025-01-31 09:54:53,669 DEBUG chr5:62164501-68672251: Successfully fit background model for 6,042,834 bp. Use segment r for 0 bp 2025-01-31 09:54:53,947 DEBUG chr5:68672251-71401501: Successfully fit background model for 2,400,346 bp. Use segment r for 0 bp 2025-01-31 09:54:53,988 DEBUG chr1:53140251-58213751: Successfully fit background model for 4,693,375 bp. Use segment r for 0 bp 2025-01-31 09:54:54,278 DEBUG chr3:51703251-68978251: Successfully fit background model for 15,625,869 bp. Use segment r for 0 bp 2025-01-31 09:54:54,641 DEBUG chr5:71401501-78068751: Successfully fit background model for 6,278,193 bp. Use segment r for 0 bp 2025-01-31 09:54:54,702 DEBUG chr1:58213751-65141501: Successfully fit background model for 6,494,916 bp. Use segment r for 0 bp 2025-01-31 09:54:54,727 DEBUG chr4:52694251-64498751: Successfully fit background model for 9,453,030 bp. Use segment r for 8,083 bp 2025-01-31 09:54:55,205 DEBUG chr2:42920751-67648251: Successfully fit background model for 22,766,453 bp. Use segment r for 552 bp 2025-01-31 09:54:55,357 DEBUG chr5:78068751-83047251: Successfully fit background model for 4,457,358 bp. Use segment r for 2,115 bp 2025-01-31 09:54:55,469 DEBUG chr1:65141501-72210751: Successfully fit background model for 6,522,095 bp. Use segment r for 0 bp 2025-01-31 09:54:55,495 DEBUG chr1:72210751-72308751: Successfully fit background model for 94,871 bp. Use segment r for 0 bp 2025-01-31 09:54:55,726 DEBUG chr1:72308751-74264251: Successfully fit background model for 1,853,493 bp. Use segment r for 0 bp 2025-01-31 09:54:55,845 DEBUG chr1:74264251-75361751: Successfully fit background model for 1,002,162 bp. Use segment r for 0 bp 2025-01-31 09:54:56,003 DEBUG chr3:68978251-79500251: Successfully fit background model for 9,418,852 bp. Use segment r for 3,115 bp 2025-01-31 09:54:56,451 DEBUG chr3:79500251-84021251: Successfully fit background model for 4,164,886 bp. Use segment r for 0 bp 2025-01-31 09:54:56,614 DEBUG chrX:39335751-72905751: Successfully fit background model for 27,953,250 bp. Use segment r for 16,226 bp 2025-01-31 09:54:56,819 DEBUG chr3:84021251-87734251: Successfully fit background model for 3,535,803 bp. Use segment r for 0 bp 2025-01-31 09:54:56,892 DEBUG chr2:67648251-81046001: Successfully fit background model for 12,763,588 bp. Use segment r for 0 bp 2025-01-31 09:54:56,983 DEBUG chr5:83047251-91957251: Successfully fit background model for 7,970,051 bp. Use segment r for 5,457 bp 2025-01-31 09:54:57,077 DEBUG chrX:72905751-75673251: Successfully fit background model for 2,151,882 bp. Use segment r for 2,791 bp 2025-01-31 09:54:57,089 DEBUG chr3:87734251-90444251: Successfully fit background model for 2,573,997 bp. Use segment r for 0 bp 2025-01-31 09:54:57,192 DEBUG chr1:75361751-86020251: Successfully fit background model for 9,394,761 bp. Use segment r for 0 bp 2025-01-31 09:54:57,264 DEBUG chrX:75673251-77423251: Successfully fit background model for 1,414,096 bp. Use segment r for 0 bp 2025-01-31 09:54:57,265 DEBUG chr2:81046001-84649751: Successfully fit background model for 3,065,798 bp. Use segment r for 0 bp 2025-01-31 09:54:57,274 DEBUG chr1:86020251-86542751: Successfully fit background model for 507,929 bp. Use segment r for 0 bp 2025-01-31 09:54:57,367 DEBUG chr2:84649751-85466751: Successfully fit background model for 767,717 bp. Use segment r for 0 bp 2025-01-31 09:54:57,566 DEBUG chr4:64498751-80409751: Successfully fit background model for 14,086,920 bp. Use segment r for 18,046 bp 2025-01-31 09:54:57,674 DEBUG chr3:90444251-94370251: Successfully fit background model for 3,013,967 bp. Use segment r for 1,785 bp 2025-01-31 09:54:57,768 DEBUG chr2:85466751-89346751: Successfully fit background model for 3,387,908 bp. Use segment r for 0 bp 2025-01-31 09:54:57,912 DEBUG chr3:94370251-96716751: Successfully fit background model for 2,146,014 bp. Use segment r for 0 bp 2025-01-31 09:54:58,009 DEBUG chr2:89346751-90846251: Successfully fit background model for 1,147,434 bp. Use segment r for 498 bp 2025-01-31 09:54:58,061 DEBUG chr1:86542751-93726251: Successfully fit background model for 6,896,455 bp. Use segment r for 0 bp 2025-01-31 09:54:58,274 DEBUG chr3:96716751-100408751: Successfully fit background model for 3,260,842 bp. Use segment r for 0 bp 2025-01-31 09:54:58,398 DEBUG chr2:90846251-94816251: Successfully fit background model for 3,845,991 bp. Use segment r for 0 bp 2025-01-31 09:54:58,534 DEBUG chr4:80409751-89816751: Successfully fit background model for 8,545,795 bp. Use segment r for 0 bp 2025-01-31 09:54:58,803 DEBUG chr4:89816751-92368251: Successfully fit background model for 2,244,810 bp. Use segment r for 0 bp 2025-01-31 09:54:59,013 DEBUG chr5:91957251-103658751: Successfully fit background model for 8,933,122 bp. Use segment r for 7,485 bp 2025-01-31 09:54:59,296 DEBUG chr2:94816251-100409751: Successfully fit background model for 4,900,978 bp. Use segment r for 7,307 bp 2025-01-31 09:54:59,440 DEBUG chr3:100408751-110353001: Successfully fit background model for 9,395,261 bp. Use segment r for 0 bp 2025-01-31 09:54:59,515 DEBUG chr1:93726251-105953751: Successfully fit background model for 10,680,885 bp. Use segment r for 0 bp 2025-01-31 09:54:59,720 DEBUG chr1:105953751-107780751: Successfully fit background model for 1,680,078 bp. Use segment r for 0 bp 2025-01-31 09:54:59,728 DEBUG chrX:77423251-91307751: Successfully fit background model for 12,011,970 bp. Use segment r for 834 bp 2025-01-31 09:55:00,045 DEBUG chr3:110353001-116309751: Successfully fit background model for 5,079,962 bp. Use segment r for 0 bp 2025-01-31 09:55:00,098 DEBUG chr3:116309751-116620251: Successfully fit background model for 301,682 bp. Use segment r for 0 bp 2025-01-31 09:55:00,129 DEBUG chr5:103658751-113722251: Successfully fit background model for 9,291,268 bp. Use segment r for 0 bp 2025-01-31 09:55:00,198 DEBUG chrX:91307751-95930251: Successfully fit background model for 3,673,809 bp. Use segment r for 0 bp 2025-01-31 09:55:00,310 DEBUG chr5:113722251-115447251: Successfully fit background model for 1,677,580 bp. Use segment r for 0 bp 2025-01-31 09:55:00,471 DEBUG chr2:100409751-108067751: Successfully fit background model for 6,916,128 bp. Use segment r for 982 bp 2025-01-31 09:55:00,546 DEBUG chr3:116620251-121150751: Successfully fit background model for 4,187,872 bp. Use segment r for 0 bp 2025-01-31 09:55:00,741 DEBUG chrX:95930251-101252251: Successfully fit background model for 4,735,079 bp. Use segment r for 0 bp 2025-01-31 09:55:00,775 DEBUG chr5:115447251-120092751: Successfully fit background model for 4,548,324 bp. Use segment r for 0 bp 2025-01-31 09:55:00,997 DEBUG chr1:107780751-118308751: Successfully fit background model for 9,155,983 bp. Use segment r for 0 bp 2025-01-31 09:55:01,082 DEBUG chr4:92368251-112007751: Successfully fit background model for 18,210,777 bp. Use segment r for 0 bp 2025-01-31 09:55:01,186 DEBUG chrX:101252251-105916751: Successfully fit background model for 4,111,108 bp. Use segment r for 0 bp 2025-01-31 09:55:01,195 DEBUG chr1:118308751-120055751: Successfully fit background model for 1,698,066 bp. Use segment r for 0 bp 2025-01-31 09:55:01,288 DEBUG chr5:120092751-125348251: Successfully fit background model for 5,034,154 bp. Use segment r for 0 bp 2025-01-31 09:55:01,393 DEBUG chr4:112007751-113857751: Successfully fit background model for 1,573,351 bp. Use segment r for 35,835 bp 2025-01-31 09:55:01,519 DEBUG chr4:113857751-115038251: Successfully fit background model for 1,086,395 bp. Use segment r for 0 bp 2025-01-31 09:55:01,578 DEBUG chr3:121150751-130688251: Successfully fit background model for 8,974,746 bp. Use segment r for 0 bp 2025-01-31 09:55:01,665 DEBUG chrX:105916751-110809251: Successfully fit background model for 4,199,278 bp. Use segment r for 0 bp 2025-01-31 09:55:01,703 DEBUG chr5:125348251-129723251: Successfully fit background model for 4,183,863 bp. Use segment r for 0 bp 2025-01-31 09:55:01,760 DEBUG chr5:129723251-130159751: Successfully fit background model for 376,118 bp. Use segment r for 0 bp 2025-01-31 09:55:02,017 DEBUG chr3:130688251-135277751: Successfully fit background model for 4,121,320 bp. Use segment r for 0 bp 2025-01-31 09:55:02,044 DEBUG chr1:120055751-125394251: Successfully fit background model for 4,924,908 bp. Use segment r for 11,483 bp 2025-01-31 09:55:02,067 DEBUG chr3:135277751-135651751: Successfully fit background model for 366,023 bp. Use segment r for 0 bp 2025-01-31 09:55:02,176 DEBUG chr5:130159751-134173251: Successfully fit background model for 3,848,833 bp. Use segment r for 0 bp 2025-01-31 09:55:02,185 DEBUG chr2:108067751-118650251: Successfully fit background model for 9,678,643 bp. Use segment r for 3,525 bp 2025-01-31 09:55:02,467 DEBUG chr2:118650251-121413251: Successfully fit background model for 2,675,517 bp. Use segment r for 0 bp 2025-01-31 09:55:02,505 DEBUG chrX:110809251-116537251: Successfully fit background model for 4,717,604 bp. Use segment r for 7,744 bp 2025-01-31 09:55:02,508 DEBUG chr3:135651751-139865251: Successfully fit background model for 3,908,725 bp. Use segment r for 0 bp 2025-01-31 09:55:02,594 DEBUG chr5:134173251-138288251: Successfully fit background model for 3,859,088 bp. Use segment r for 0 bp 2025-01-31 09:55:02,606 DEBUG chr1:125394251-131019751: Successfully fit background model for 5,253,281 bp. Use segment r for 0 bp 2025-01-31 09:55:03,098 DEBUG chr1:131019751-135879251: Successfully fit background model for 4,733,302 bp. Use segment r for 0 bp 2025-01-31 09:55:03,396 DEBUG chr4:115038251-131714751: Successfully fit background model for 15,013,638 bp. Use segment r for 0 bp 2025-01-31 09:55:03,547 DEBUG chr1:135879251-140387751: Successfully fit background model for 4,115,695 bp. Use segment r for 0 bp 2025-01-31 09:55:03,566 DEBUG chr3:139865251-147135251: Successfully fit background model for 6,831,784 bp. Use segment r for 13,397 bp 2025-01-31 09:55:03,685 DEBUG chrX:116537251-124247501: Successfully fit background model for 5,827,951 bp. Use segment r for 12,378 bp 2025-01-31 09:55:04,150 DEBUG chr5:138288251-151834684: Successfully fit background model for 12,575,402 bp. Use segment r for 0 bp 2025-01-31 09:55:04,154 DEBUG chr3:147135251-151326251: Successfully fit background model for 3,965,008 bp. Use segment r for 2,437 bp 2025-01-31 09:55:04,296 DEBUG chr2:121413251-137840751: Successfully fit background model for 15,458,481 bp. Use segment r for 0 bp 2025-01-31 09:55:04,599 DEBUG chr4:131714751-141832251: Successfully fit background model for 9,878,997 bp. Use segment r for 0 bp 2025-01-31 09:55:04,856 DEBUG chr1:140387751-151022751: Successfully fit background model for 9,367,606 bp. Use segment r for 0 bp 2025-01-31 09:55:04,859 DEBUG chrX:126047500-134039001: Successfully fit background model for 6,894,782 bp. Use segment r for 19,840 bp 2025-01-31 09:55:05,479 DEBUG chr3:151326251-160039680: Successfully fit background model for 7,853,675 bp. Use segment r for 49,141 bp 2025-01-31 09:55:05,523 DEBUG chr4:141832251-147847751: Successfully fit background model for 3,787,060 bp. Use segment r for 3,439 bp 2025-01-31 09:55:05,715 DEBUG chr2:137840751-150747251: Successfully fit background model for 11,923,953 bp. Use segment r for 0 bp 2025-01-31 09:55:06,275 DEBUG chr4:147847751-154854751: Successfully fit background model for 6,865,155 bp. Use segment r for 0 bp 2025-01-31 09:55:06,567 DEBUG chr4:154854751-156508116: Successfully fit background model for 1,376,455 bp. Use segment r for 0 bp 2025-01-31 09:55:06,984 DEBUG chr2:150747251-158570251: Successfully fit background model for 7,248,999 bp. Use segment r for 140 bp 2025-01-31 09:55:07,650 DEBUG chr2:158570251-164725751: Successfully fit background model for 5,876,678 bp. Use segment r for 0 bp 2025-01-31 09:55:07,991 DEBUG chr1:151022751-172081751: Successfully fit background model for 19,792,155 bp. Use segment r for 0 bp 2025-01-31 09:55:08,032 DEBUG chr2:164725751-167980251: Successfully fit background model for 3,154,344 bp. Use segment r for 0 bp 2025-01-31 09:55:08,673 DEBUG chr1:172081751-178303251: Successfully fit background model for 5,628,577 bp. Use segment r for 0 bp 2025-01-31 09:55:09,002 DEBUG chr1:178303251-181209751: Successfully fit background model for 2,807,283 bp. Use segment r for 0 bp 2025-01-31 09:55:09,506 DEBUG chr2:167980251-175179001: Successfully fit background model for 6,853,570 bp. Use segment r for 512 bp 2025-01-31 09:55:09,632 DEBUG chr1:181209751-185328001: Successfully fit background model for 3,833,581 bp. Use segment r for 0 bp 2025-01-31 09:55:10,012 DEBUG chr2:176700000-179820751: Successfully fit background model for 1,921,382 bp. Use segment r for 8,550 bp 2025-01-31 09:55:10,255 DEBUG chr2:179820751-182113224: Successfully fit background model for 2,102,974 bp. Use segment r for 0 bp 2025-01-31 09:55:10,263 DEBUG chr1:185328001-190893251: Successfully fit background model for 5,362,776 bp. Use segment r for 0 bp 2025-01-31 09:55:10,398 DEBUG chr1:190893251-191922751: Successfully fit background model for 997,037 bp. Use segment r for 0 bp 2025-01-31 09:55:10,946 DEBUG chr1:191922751-195471971: Successfully fit background model for 3,188,368 bp. Use segment r for 0 bp 2025-01-31 09:55:15,893 DEBUG chrX:134039001-169969251: Successfully fit background model for 29,767,372 bp. Use segment r for 15,394 bp 2025-01-31 09:55:16,104 DEBUG chrX:169969251-171031299: Successfully fit background model for 15,471 bp. Use segment r for 0 bp 2025-01-31 09:56:46,342 DEBUG chr6:3050000-7671251: Successfully fit background model for 4,065,386 bp. Use segment r for 0 bp 2025-01-31 09:56:46,792 DEBUG chr7:3004000-3581251: Successfully fit background model for 431,387 bp. Use segment r for 0 bp 2025-01-31 09:56:47,047 DEBUG chr7:3581251-5126751: Successfully fit background model for 1,241,106 bp. Use segment r for 871 bp 2025-01-31 09:56:47,156 DEBUG chr7:5126751-5743751: Successfully fit background model for 445,554 bp. Use segment r for 1,633 bp 2025-01-31 09:56:47,319 DEBUG chr7:5743751-7300751: Successfully fit background model for 1,312,165 bp. Use segment r for 0 bp 2025-01-31 09:56:48,187 DEBUG chr7:7300751-12880751: Successfully fit background model for 2,104,146 bp. Use segment r for 47,678 bp 2025-01-31 09:56:48,220 DEBUG chr7:12880751-13064251: Successfully fit background model for 175,731 bp. Use segment r for 0 bp 2025-01-31 09:56:48,685 DEBUG chr7:13064251-15911251: Successfully fit background model for 1,758,685 bp. Use segment r for 2,665 bp 2025-01-31 09:56:48,754 DEBUG chr6:7671251-28390251: Successfully fit background model for 18,405,943 bp. Use segment r for 0 bp 2025-01-31 09:56:48,813 DEBUG chr7:15911251-17095251: Successfully fit background model for 1,148,676 bp. Use segment r for 0 bp 2025-01-31 09:56:49,103 DEBUG chr7:17095251-19002251: Successfully fit background model for 1,343,424 bp. Use segment r for 29,069 bp 2025-01-31 09:56:49,199 DEBUG chr7:19002251-19833751: Successfully fit background model for 814,367 bp. Use segment r for 0 bp 2025-01-31 09:56:49,242 DEBUG chr7:19833751-20102001: Successfully fit background model for 211,760 bp. Use segment r for 0 bp 2025-01-31 09:56:49,459 DEBUG chr7:22791500-24067251: Successfully fit background model for 622,995 bp. Use segment r for 5,002 bp 2025-01-31 09:56:49,478 DEBUG chr6:28390251-35131751: Successfully fit background model for 6,444,672 bp. Use segment r for 0 bp 2025-01-31 09:56:49,793 DEBUG chr6:35131751-38292251: Successfully fit background model for 2,920,599 bp. Use segment r for 0 bp 2025-01-31 09:56:49,859 DEBUG chr6:38292251-38821751: Successfully fit background model for 518,152 bp. Use segment r for 0 bp 2025-01-31 09:56:50,174 DEBUG chr7:24067251-30977751: Successfully fit background model for 6,300,773 bp. Use segment r for 0 bp 2025-01-31 09:56:50,596 DEBUG chr7:30977751-33748251: Successfully fit background model for 1,168,621 bp. Use segment r for 28,842 bp 2025-01-31 09:56:50,904 DEBUG chr6:38821751-47593751: Successfully fit background model for 7,927,643 bp. Use segment r for 0 bp 2025-01-31 09:56:51,057 DEBUG chr7:33748251-38313751: Successfully fit background model for 4,376,082 bp. Use segment r for 0 bp 2025-01-31 09:56:51,078 DEBUG chr6:47593751-49230751: Successfully fit background model for 1,392,841 bp. Use segment r for 0 bp 2025-01-31 09:56:51,886 DEBUG chr7:38313751-43864251: Successfully fit background model for 4,022,906 bp. Use segment r for 10,738 bp 2025-01-31 09:56:51,988 DEBUG chr7:43864251-44814751: Successfully fit background model for 892,031 bp. Use segment r for 0 bp 2025-01-31 09:56:52,097 DEBUG chr7:44814751-45682751: Successfully fit background model for 851,915 bp. Use segment r for 0 bp 2025-01-31 09:56:52,261 DEBUG chr7:45682751-47235751: Successfully fit background model for 1,505,791 bp. Use segment r for 0 bp 2025-01-31 09:56:52,394 DEBUG chr7:47235751-48481751: Successfully fit background model for 1,000,055 bp. Use segment r for 0 bp 2025-01-31 09:56:52,627 DEBUG chr7:48481751-49981751: Successfully fit background model for 1,422,547 bp. Use segment r for 2,867 bp 2025-01-31 09:56:53,168 DEBUG chr7:49981751-55382751: Successfully fit background model for 4,743,218 bp. Use segment r for 0 bp 2025-01-31 09:56:53,304 DEBUG chr7:55382751-56649251: Successfully fit background model for 1,106,061 bp. Use segment r for 0 bp 2025-01-31 09:56:54,369 DEBUG chr7:56649251-63873251: Successfully fit background model for 5,959,408 bp. Use segment r for 29,614 bp 2025-01-31 09:56:54,817 DEBUG chr6:49230751-70709501: Successfully fit background model for 19,234,033 bp. Use segment r for 14,011 bp 2025-01-31 09:56:54,877 DEBUG chr7:63873251-69180251: Successfully fit background model for 5,035,843 bp. Use segment r for 0 bp 2025-01-31 09:56:55,087 DEBUG chr6:70709501-72502751: Successfully fit background model for 1,730,751 bp. Use segment r for 0 bp 2025-01-31 09:56:55,479 DEBUG chr6:72502751-75459251: Successfully fit background model for 2,672,961 bp. Use segment r for 0 bp 2025-01-31 09:56:55,520 DEBUG chr7:69180251-73517251: Successfully fit background model for 4,051,628 bp. Use segment r for 0 bp 2025-01-31 09:56:56,198 DEBUG chr7:73517251-80002251: Successfully fit background model for 6,053,319 bp. Use segment r for 0 bp 2025-01-31 09:56:56,250 DEBUG chr7:80002251-80369251: Successfully fit background model for 359,679 bp. Use segment r for 0 bp 2025-01-31 09:56:56,583 DEBUG chr6:75459251-83026751: Successfully fit background model for 6,863,416 bp. Use segment r for 6,530 bp 2025-01-31 09:56:56,732 DEBUG chr7:80369251-84987751: Successfully fit background model for 4,361,816 bp. Use segment r for 0 bp 2025-01-31 09:56:57,044 DEBUG chr7:84987751-88328251: Successfully fit background model for 2,966,151 bp. Use segment r for 0 bp 2025-01-31 09:56:57,292 DEBUG chr7:88328251-90759251: Successfully fit background model for 2,205,064 bp. Use segment r for 0 bp 2025-01-31 09:56:57,461 DEBUG chr6:83026751-91939751: Successfully fit background model for 8,426,233 bp. Use segment r for 0 bp 2025-01-31 09:56:57,681 DEBUG chr7:90759251-94806001: Successfully fit background model for 3,711,399 bp. Use segment r for 0 bp 2025-01-31 09:56:57,689 DEBUG chr10:3101500-40126751: Successfully fit background model for 33,647,515 bp. Use segment r for 12,648 bp 2025-01-31 09:56:58,172 DEBUG chr7:94806001-99370751: Successfully fit background model for 4,299,082 bp. Use segment r for 0 bp 2025-01-31 09:56:58,235 DEBUG chr10:40126751-43449251: Successfully fit background model for 3,187,954 bp. Use segment r for 0 bp 2025-01-31 09:56:58,471 DEBUG chr7:99370751-102204251: Successfully fit background model for 2,768,219 bp. Use segment r for 0 bp 2025-01-31 09:56:58,690 DEBUG chr10:43449251-46910251: Successfully fit background model for 3,221,329 bp. Use segment r for 0 bp 2025-01-31 09:56:59,235 DEBUG chr6:91939751-104088251: Successfully fit background model for 11,461,447 bp. Use segment r for 0 bp 2025-01-31 09:56:59,593 DEBUG chr10:46910251-54998751: Successfully fit background model for 7,143,948 bp. Use segment r for 0 bp 2025-01-31 09:57:00,129 DEBUG chr10:54998751-59863751: Successfully fit background model for 4,110,547 bp. Use segment r for 0 bp 2025-01-31 09:57:00,477 DEBUG chr10:59863751-63336751: Successfully fit background model for 3,383,325 bp. Use segment r for 0 bp 2025-01-31 09:57:00,536 DEBUG chr6:104088251-112900251: Successfully fit background model for 7,980,672 bp. Use segment r for 178 bp 2025-01-31 09:57:00,631 DEBUG chr6:112900251-113615751: Successfully fit background model for 701,490 bp. Use segment r for 0 bp 2025-01-31 09:57:02,399 DEBUG chr8:3070000-4785751: Successfully fit background model for 1,503,146 bp. Use segment r for 0 bp 2025-01-31 09:57:02,444 DEBUG chr6:113615751-124660751: Successfully fit background model for 9,877,830 bp. Use segment r for 2,555 bp 2025-01-31 09:57:02,523 DEBUG chr6:124660751-125224251: Successfully fit background model for 541,105 bp. Use segment r for 0 bp 2025-01-31 09:57:02,667 DEBUG chr10:63336751-75498751: Successfully fit background model for 11,152,462 bp. Use segment r for 93,455 bp 2025-01-31 09:57:02,825 DEBUG chr7:102204251-126261001: Successfully fit background model for 21,988,535 bp. Use segment r for 2,282 bp 2025-01-31 09:57:02,880 DEBUG chr6:125224251-128796251: Successfully fit background model for 3,428,607 bp. Use segment r for 0 bp 2025-01-31 09:57:02,891 DEBUG chr8:4785751-9690751: Successfully fit background model for 4,446,438 bp. Use segment r for 0 bp 2025-01-31 09:57:03,008 DEBUG chr7:126261001-127812251: Successfully fit background model for 1,501,888 bp. Use segment r for 0 bp 2025-01-31 09:57:03,092 DEBUG chr10:75498751-79631751: Successfully fit background model for 3,837,841 bp. Use segment r for 0 bp 2025-01-31 09:57:03,305 DEBUG chr10:79631751-81650751: Successfully fit background model for 1,984,195 bp. Use segment r for 0 bp 2025-01-31 09:57:03,805 DEBUG chr8:9690751-15934751: Successfully fit background model for 5,960,877 bp. Use segment r for 7,700 bp 2025-01-31 09:57:04,452 DEBUG chr7:127812251-140820251: Successfully fit background model for 12,416,657 bp. Use segment r for 0 bp 2025-01-31 09:57:04,572 DEBUG chr7:140820251-141851501: Successfully fit background model for 967,030 bp. Use segment r for 0 bp 2025-01-31 09:57:04,717 DEBUG chr8:15934751-22165751: Successfully fit background model for 4,152,595 bp. Use segment r for 45,694 bp 2025-01-31 09:57:04,910 DEBUG chr7:141851501-145441459: Successfully fit background model for 3,366,928 bp. Use segment r for 0 bp 2025-01-31 09:57:05,168 DEBUG chr8:22165751-27042501: Successfully fit background model for 4,675,241 bp. Use segment r for 0 bp 2025-01-31 09:57:06,463 DEBUG chr6:128796251-149736546: Successfully fit background model for 18,923,313 bp. Use segment r for 11,753 bp 2025-01-31 09:57:07,472 DEBUG chr10:81650751-104171001: Successfully fit background model for 20,671,726 bp. Use segment r for 270 bp 2025-01-31 09:57:10,183 DEBUG chr10:104171001-115314251: Successfully fit background model for 10,246,022 bp. Use segment r for 5,665 bp 2025-01-31 09:57:11,490 DEBUG chr10:115314251-126895751: Successfully fit background model for 10,844,962 bp. Use segment r for 0 bp 2025-01-31 09:57:11,689 DEBUG chr10:126895751-128783251: Successfully fit background model for 1,832,885 bp. Use segment r for 0 bp 2025-01-31 09:57:11,728 DEBUG chr8:27042501-60942251: Successfully fit background model for 30,480,263 bp. Use segment r for 11,196 bp 2025-01-31 09:57:11,794 DEBUG chr8:60942251-61024251: Successfully fit background model for 73,584 bp. Use segment r for 0 bp 2025-01-31 09:57:11,899 DEBUG chr10:128783251-130694993: Successfully fit background model for 1,520,890 bp. Use segment r for 0 bp 2025-01-31 09:57:13,309 DEBUG chr8:61024251-69715251: Successfully fit background model for 7,745,767 bp. Use segment r for 10,793 bp 2025-01-31 09:57:13,369 DEBUG chr14:3982500-5090501: Successfully fit background model for 59,457 bp. Use segment r for 5,509 bp 2025-01-31 09:57:13,496 DEBUG chr8:69715251-71510001: Successfully fit background model for 1,638,295 bp. Use segment r for 0 bp 2025-01-31 09:57:14,841 DEBUG chr8:71510001-83564251: Successfully fit background model for 10,913,960 bp. Use segment r for 0 bp 2025-01-31 09:57:15,007 DEBUG chr8:83564251-85091251: Successfully fit background model for 1,498,855 bp. Use segment r for 0 bp 2025-01-31 09:57:15,966 DEBUG chr8:85091251-94011751: Successfully fit background model for 8,519,530 bp. Use segment r for 0 bp 2025-01-31 09:57:15,970 DEBUG chr14:5841000-19702251: Successfully fit background model for 10,925,706 bp. Use segment r for 24,398 bp 2025-01-31 09:57:16,195 DEBUG chr14:19702251-21806251: Successfully fit background model for 2,035,117 bp. Use segment r for 0 bp 2025-01-31 09:57:16,228 DEBUG chr8:94011751-96651001: Successfully fit background model for 2,498,389 bp. Use segment r for 0 bp 2025-01-31 09:57:16,835 DEBUG chr8:96651001-102228251: Successfully fit background model for 5,086,335 bp. Use segment r for 0 bp 2025-01-31 09:57:17,059 DEBUG chr14:21806251-29888251: Successfully fit background model for 7,305,262 bp. Use segment r for 0 bp 2025-01-31 09:57:17,064 DEBUG chr8:102228251-104533251: Successfully fit background model for 2,180,717 bp. Use segment r for 0 bp 2025-01-31 09:57:17,247 DEBUG chr14:29888251-31363751: Successfully fit background model for 1,434,998 bp. Use segment r for 0 bp 2025-01-31 09:57:17,637 DEBUG chr14:31363751-35246751: Successfully fit background model for 3,736,410 bp. Use segment r for 0 bp 2025-01-31 09:57:18,535 DEBUG chr8:104533251-111875251: Successfully fit background model for 7,036,722 bp. Use segment r for 253 bp 2025-01-31 09:57:19,261 DEBUG chr8:111875251-116868751: Successfully fit background model for 4,522,073 bp. Use segment r for 287,756 bp 2025-01-31 09:57:19,499 DEBUG chr8:116868751-119338751: Successfully fit background model for 2,397,787 bp. Use segment r for 0 bp 2025-01-31 09:57:20,003 DEBUG chr8:119338751-124293751: Successfully fit background model for 4,736,502 bp. Use segment r for 0 bp 2025-01-31 09:57:20,020 DEBUG chr14:35246751-45278751: Successfully fit background model for 6,584,050 bp. Use segment r for 12,045 bp 2025-01-31 09:57:20,486 DEBUG chr8:124293751-129401213: Successfully fit background model for 4,740,292 bp. Use segment r for 0 bp 2025-01-31 09:57:21,052 DEBUG chr14:45278751-51984251: Successfully fit background model for 6,107,489 bp. Use segment r for 0 bp 2025-01-31 09:57:21,167 DEBUG chr14:51984251-52327751: Successfully fit background model for 334,518 bp. Use segment r for 0 bp 2025-01-31 09:57:21,444 DEBUG chr14:52327751-54217751: Successfully fit background model for 1,095,311 bp. Use segment r for 0 bp 2025-01-31 09:57:21,585 DEBUG chr14:54217751-55614751: Successfully fit background model for 1,329,477 bp. Use segment r for 0 bp 2025-01-31 09:57:23,279 DEBUG chr14:55614751-71256251: Successfully fit background model for 14,458,197 bp. Use segment r for 0 bp 2025-01-31 09:57:23,568 DEBUG chr14:71256251-74209501: Successfully fit background model for 2,697,149 bp. Use segment r for 0 bp 2025-01-31 09:57:24,135 DEBUG chr14:74209501-80288751: Successfully fit background model for 5,759,597 bp. Use segment r for 0 bp 2025-01-31 09:57:25,231 DEBUG chr14:80288751-86023501: Successfully fit background model for 5,125,772 bp. Use segment r for 5,678 bp 2025-01-31 09:57:25,389 DEBUG chr14:86023501-87559751: Successfully fit background model for 1,427,135 bp. Use segment r for 0 bp 2025-01-31 09:57:26,189 DEBUG chr9:3002500-13296251: Successfully fit background model for 9,011,884 bp. Use segment r for 0 bp 2025-01-31 09:57:26,421 DEBUG chr9:13296251-14996251: Successfully fit background model for 1,531,368 bp. Use segment r for 0 bp 2025-01-31 09:57:26,471 DEBUG chr14:87559751-95306251: Successfully fit background model for 6,989,005 bp. Use segment r for 2,853 bp 2025-01-31 09:57:27,640 DEBUG chr9:14996251-20639251: Successfully fit background model for 5,009,264 bp. Use segment r for 0 bp 2025-01-31 09:57:27,994 DEBUG chr9:20639251-21917751: Successfully fit background model for 1,235,739 bp. Use segment r for 0 bp 2025-01-31 09:57:28,547 DEBUG chr9:21917751-25657251: Successfully fit background model for 3,450,965 bp. Use segment r for 0 bp 2025-01-31 09:57:29,331 DEBUG chr9:25657251-31027251: Successfully fit background model for 5,094,742 bp. Use segment r for 0 bp 2025-01-31 09:57:30,239 DEBUG chr9:31027251-37754501: Successfully fit background model for 6,246,622 bp. Use segment r for 0 bp 2025-01-31 09:57:30,485 DEBUG chr9:37754501-39735251: Successfully fit background model for 1,778,392 bp. Use segment r for 0 bp 2025-01-31 09:57:30,734 DEBUG chr14:95306251-121268251: Successfully fit background model for 23,771,867 bp. Use segment r for 23,676 bp 2025-01-31 09:57:30,975 DEBUG chr9:39735251-44067001: Successfully fit background model for 4,179,463 bp. Use segment r for 0 bp 2025-01-31 09:57:31,028 DEBUG chr9:44067001-44474251: Successfully fit background model for 383,989 bp. Use segment r for 0 bp 2025-01-31 09:57:31,127 DEBUG chr14:121268251-124902244: Successfully fit background model for 3,146,850 bp. Use segment r for 0 bp 2025-01-31 09:57:32,615 DEBUG chr9:44474251-56849251: Successfully fit background model for 11,829,545 bp. Use segment r for 0 bp 2025-01-31 09:57:33,603 DEBUG chr9:56849251-66068751: Successfully fit background model for 8,976,241 bp. Use segment r for 0 bp 2025-01-31 09:57:35,273 DEBUG chr9:66068751-81050501: Successfully fit background model for 14,082,853 bp. Use segment r for 0 bp 2025-01-31 09:57:37,651 DEBUG chr9:81050501-95538251: Successfully fit background model for 12,738,886 bp. Use segment r for 714 bp 2025-01-31 09:57:38,694 DEBUG chr9:95538251-106169751: Successfully fit background model for 10,178,767 bp. Use segment r for 0 bp 2025-01-31 09:57:39,122 DEBUG chr9:106169751-110654751: Successfully fit background model for 4,132,412 bp. Use segment r for 0 bp 2025-01-31 09:57:40,131 DEBUG chr9:110654751-119320251: Successfully fit background model for 8,188,887 bp. Use segment r for 0 bp 2025-01-31 09:57:40,668 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 09:58:26,036 DEBUG chr11:3101000-3204251: Successfully fit background model for 76,214 bp. Use segment r for 0 bp 2025-01-31 09:58:26,411 DEBUG chr11:3204251-6722251: Successfully fit background model for 3,383,244 bp. Use segment r for 0 bp 2025-01-31 09:58:27,839 DEBUG chr11:6722251-18786751: Successfully fit background model for 10,796,894 bp. Use segment r for 0 bp 2025-01-31 09:58:28,543 DEBUG chr11:18786751-24303251: Successfully fit background model for 5,210,995 bp. Use segment r for 0 bp 2025-01-31 09:58:29,017 DEBUG chr11:24303251-28612751: Successfully fit background model for 3,864,393 bp. Use segment r for 0 bp 2025-01-31 09:58:29,359 DEBUG chr11:28612751-32186751: Successfully fit background model for 3,276,202 bp. Use segment r for 0 bp 2025-01-31 09:58:29,988 DEBUG chr11:32186751-37909251: Successfully fit background model for 5,422,755 bp. Use segment r for 0 bp 2025-01-31 09:58:30,993 DEBUG chr11:37909251-44453251: Successfully fit background model for 6,043,562 bp. Use segment r for 829 bp 2025-01-31 09:58:31,429 DEBUG chr11:44453251-48771251: Successfully fit background model for 3,982,316 bp. Use segment r for 0 bp 2025-01-31 09:58:31,452 DEBUG chr11:48771251-48876751: Successfully fit background model for 102,529 bp. Use segment r for 0 bp 2025-01-31 09:58:31,630 DEBUG chr12:3009500-5433251: Successfully fit background model for 2,237,723 bp. Use segment r for 0 bp 2025-01-31 09:58:31,926 DEBUG chr12:5433251-8293751: Successfully fit background model for 2,601,205 bp. Use segment r for 0 bp 2025-01-31 09:58:32,921 DEBUG chr13:3000500-21158251: Successfully fit background model for 15,922,904 bp. Use segment r for 1,778 bp 2025-01-31 09:58:33,076 DEBUG chr11:48876751-58902751: Successfully fit background model for 9,413,377 bp. Use segment r for 0 bp 2025-01-31 09:58:33,141 DEBUG chr13:21158251-22052251: Successfully fit background model for 800,865 bp. Use segment r for 0 bp 2025-01-31 09:58:33,275 DEBUG chr13:22052251-23249751: Successfully fit background model for 899,734 bp. Use segment r for 0 bp 2025-01-31 09:58:33,346 DEBUG chr13:23249751-23765251: Successfully fit background model for 471,692 bp. Use segment r for 0 bp 2025-01-31 09:58:33,556 DEBUG chr11:58902751-62455751: Successfully fit background model for 3,377,495 bp. Use segment r for 0 bp 2025-01-31 09:58:33,677 DEBUG chr13:23765251-25522251: Successfully fit background model for 1,648,113 bp. Use segment r for 0 bp 2025-01-31 09:58:33,954 DEBUG chr13:25522251-27956251: Successfully fit background model for 2,178,307 bp. Use segment r for 0 bp 2025-01-31 09:58:34,358 DEBUG chr11:62455751-68965251: Successfully fit background model for 6,281,195 bp. Use segment r for 0 bp 2025-01-31 09:58:34,537 DEBUG chr11:68965251-70022751: Successfully fit background model for 1,039,025 bp. Use segment r for 0 bp 2025-01-31 09:58:34,651 DEBUG chr11:70022751-71059251: Successfully fit background model for 1,000,340 bp. Use segment r for 0 bp 2025-01-31 09:58:34,933 DEBUG chr15:3050500-5088251: Successfully fit background model for 1,734,083 bp. Use segment r for 448 bp 2025-01-31 09:58:35,021 DEBUG chr11:71059251-74829751: Successfully fit background model for 3,449,045 bp. Use segment r for 0 bp 2025-01-31 09:58:35,038 DEBUG chr11:74829751-74899251: Successfully fit background model for 61,792 bp. Use segment r for 0 bp 2025-01-31 09:58:35,232 DEBUG chr15:5088251-8070251: Successfully fit background model for 2,722,290 bp. Use segment r for 0 bp 2025-01-31 09:58:35,379 DEBUG chr11:74899251-78140751: Successfully fit background model for 3,143,827 bp. Use segment r for 0 bp 2025-01-31 09:58:35,848 DEBUG chr15:8070251-13623751: Successfully fit background model for 5,150,225 bp. Use segment r for 0 bp 2025-01-31 09:58:36,829 DEBUG chr11:78140751-90878751: Successfully fit background model for 12,265,355 bp. Use segment r for 0 bp 2025-01-31 09:58:36,945 DEBUG chr15:13623751-23171251: Successfully fit background model for 8,512,672 bp. Use segment r for 0 bp 2025-01-31 09:58:37,145 DEBUG chr11:90878751-94127501: Successfully fit background model for 3,019,174 bp. Use segment r for 0 bp 2025-01-31 09:58:37,716 DEBUG chr12:8293751-31942751: Successfully fit background model for 18,070,106 bp. Use segment r for 32,649 bp 2025-01-31 09:58:37,866 DEBUG chr12:31942751-33145251: Successfully fit background model for 1,120,667 bp. Use segment r for 0 bp 2025-01-31 09:58:38,543 DEBUG chr11:94127501-106974251: Successfully fit background model for 12,432,988 bp. Use segment r for 0 bp 2025-01-31 09:58:38,737 DEBUG chr15:23171251-33742501: Successfully fit background model for 9,616,393 bp. Use segment r for 65 bp 2025-01-31 09:58:38,906 DEBUG chr11:106974251-110613251: Successfully fit background model for 3,512,155 bp. Use segment r for 0 bp 2025-01-31 09:58:39,228 DEBUG chr13:27956251-54433751: Successfully fit background model for 24,588,953 bp. Use segment r for 250 bp 2025-01-31 09:58:39,259 DEBUG chr15:33742501-39116751: Successfully fit background model for 4,855,006 bp. Use segment r for 0 bp 2025-01-31 09:58:39,338 DEBUG chr11:110613251-115145251: Successfully fit background model for 4,352,301 bp. Use segment r for 0 bp 2025-01-31 09:58:39,374 DEBUG chr13:54433751-55506251: Successfully fit background model for 1,033,544 bp. Use segment r for 0 bp 2025-01-31 09:58:39,648 DEBUG chr13:55506251-58108751: Successfully fit background model for 2,543,303 bp. Use segment r for 0 bp 2025-01-31 09:58:39,814 DEBUG chr15:39116751-45140251: Successfully fit background model for 5,511,716 bp. Use segment r for 0 bp 2025-01-31 09:58:40,016 DEBUG chr11:115145251-122082543: Successfully fit background model for 6,621,503 bp. Use segment r for 0 bp 2025-01-31 09:58:40,269 DEBUG chr15:45140251-49970251: Successfully fit background model for 4,329,556 bp. Use segment r for 0 bp 2025-01-31 09:58:40,700 DEBUG chr13:58108751-65287251: Successfully fit background model for 6,367,802 bp. Use segment r for 13,446 bp 2025-01-31 09:58:40,955 DEBUG chr15:49970251-57225251: Successfully fit background model for 6,620,957 bp. Use segment r for 0 bp 2025-01-31 09:58:41,111 DEBUG chr12:33145251-51686751: Successfully fit background model for 16,663,688 bp. Use segment r for 135,199 bp 2025-01-31 09:58:41,223 DEBUG chr15:57225251-59996751: Successfully fit background model for 2,652,526 bp. Use segment r for 0 bp 2025-01-31 09:58:41,821 DEBUG chr12:51686751-59008251: Successfully fit background model for 6,632,260 bp. Use segment r for 0 bp 2025-01-31 09:58:41,973 DEBUG chr15:59996751-67452751: Successfully fit background model for 6,770,075 bp. Use segment r for 0 bp 2025-01-31 09:58:42,459 DEBUG chr15:67452751-73059751: Successfully fit background model for 5,177,139 bp. Use segment r for 0 bp 2025-01-31 09:58:42,710 DEBUG chr15:73059751-75880251: Successfully fit background model for 2,643,836 bp. Use segment r for 0 bp 2025-01-31 09:58:42,797 DEBUG chr15:75880251-76734751: Successfully fit background model for 831,615 bp. Use segment r for 0 bp 2025-01-31 09:58:42,865 DEBUG chr13:65287251-78162751: Successfully fit background model for 10,418,180 bp. Use segment r for 9,666 bp 2025-01-31 09:58:42,893 DEBUG chr13:78162751-78214251: Successfully fit background model for 51,397 bp. Use segment r for 0 bp 2025-01-31 09:58:42,964 DEBUG chr12:59008251-69143751: Successfully fit background model for 9,023,018 bp. Use segment r for 0 bp 2025-01-31 09:58:43,182 DEBUG chr13:78214251-80881751: Successfully fit background model for 2,395,277 bp. Use segment r for 0 bp 2025-01-31 09:58:43,194 DEBUG chr13:80881751-80933251: Successfully fit background model for 51,270 bp. Use segment r for 0 bp 2025-01-31 09:58:43,348 DEBUG chr15:76734751-82337251: Successfully fit background model for 5,348,187 bp. Use segment r for 0 bp 2025-01-31 09:58:43,461 DEBUG chr16:3017000-5458751: Successfully fit background model for 1,930,686 bp. Use segment r for 1,576 bp 2025-01-31 09:58:43,488 DEBUG chr13:80933251-83744751: Successfully fit background model for 2,600,423 bp. Use segment r for 0 bp 2025-01-31 09:58:43,579 DEBUG chr15:82337251-84853251: Successfully fit background model for 2,374,427 bp. Use segment r for 0 bp 2025-01-31 09:58:43,812 DEBUG chr16:5458751-7940751: Successfully fit background model for 2,389,655 bp. Use segment r for 152 bp 2025-01-31 09:58:43,912 DEBUG chr13:83744751-88190251: Successfully fit background model for 3,866,118 bp. Use segment r for 0 bp 2025-01-31 09:58:44,325 DEBUG chr13:88190251-92527751: Successfully fit background model for 4,041,172 bp. Use segment r for 0 bp 2025-01-31 09:58:44,916 DEBUG chr12:69143751-86715251: Successfully fit background model for 16,723,469 bp. Use segment r for 0 bp 2025-01-31 09:58:44,978 DEBUG chr12:86715251-87026251: Successfully fit background model for 304,327 bp. Use segment r for 0 bp 2025-01-31 09:58:45,029 DEBUG chr15:84853251-98504251: Successfully fit background model for 13,009,391 bp. Use segment r for 0 bp 2025-01-31 09:58:45,141 DEBUG chr13:92527751-100736001: Successfully fit background model for 7,737,528 bp. Use segment r for 0 bp 2025-01-31 09:58:45,548 DEBUG chr15:98504251-104043685: Successfully fit background model for 5,139,162 bp. Use segment r for 0 bp 2025-01-31 09:58:45,570 DEBUG chr16:7940751-23509751: Successfully fit background model for 14,403,253 bp. Use segment r for 0 bp 2025-01-31 09:58:45,608 DEBUG chr12:87026251-93176251: Successfully fit background model for 5,304,965 bp. Use segment r for 0 bp 2025-01-31 09:58:46,035 DEBUG chr16:23509751-28255751: Successfully fit background model for 4,442,379 bp. Use segment r for 0 bp 2025-01-31 09:58:46,173 DEBUG chr13:100736001-111488001: Successfully fit background model for 9,993,245 bp. Use segment r for 0 bp 2025-01-31 09:58:46,315 DEBUG chr13:111488001-112770751: Successfully fit background model for 1,233,071 bp. Use segment r for 0 bp 2025-01-31 09:58:46,374 DEBUG chr16:28255751-31868751: Successfully fit background model for 3,440,728 bp. Use segment r for 0 bp 2025-01-31 09:58:46,444 DEBUG chr12:93176251-99159751: Successfully fit background model for 5,415,974 bp. Use segment r for 7,822 bp 2025-01-31 09:58:46,643 DEBUG chr13:112770751-115906751: Successfully fit background model for 2,959,711 bp. Use segment r for 0 bp 2025-01-31 09:58:46,833 DEBUG chr12:99159751-103301251: Successfully fit background model for 3,917,695 bp. Use segment r for 0 bp 2025-01-31 09:58:46,991 DEBUG chr13:115906751-119428001: Successfully fit background model for 3,209,367 bp. Use segment r for 0 bp 2025-01-31 09:58:47,102 DEBUG chr13:119428001-120421639: Successfully fit background model for 401,760 bp. Use segment r for 0 bp 2025-01-31 09:58:47,154 DEBUG chr16:31868751-39186251: Successfully fit background model for 6,989,794 bp. Use segment r for 0 bp 2025-01-31 09:58:47,606 DEBUG chr12:103301251-110416251: Successfully fit background model for 6,790,996 bp. Use segment r for 0 bp 2025-01-31 09:58:47,883 DEBUG chr12:110416251-113064251: Successfully fit background model for 2,576,594 bp. Use segment r for 0 bp 2025-01-31 09:58:48,860 DEBUG chr12:113064251-120129022: Successfully fit background model for 6,128,470 bp. Use segment r for 0 bp 2025-01-31 09:58:50,536 DEBUG chr16:39186251-55821251: Successfully fit background model for 15,167,228 bp. Use segment r for 1,790 bp 2025-01-31 09:58:51,321 DEBUG chr16:55821251-60175251: Successfully fit background model for 3,880,905 bp. Use segment r for 502 bp 2025-01-31 09:58:51,716 DEBUG chr16:60175251-64082751: Successfully fit background model for 3,470,097 bp. Use segment r for 0 bp 2025-01-31 09:58:54,612 DEBUG chr16:64082751-87397251: Successfully fit background model for 21,191,977 bp. Use segment r for 0 bp 2025-01-31 09:58:55,048 DEBUG chr16:87397251-89851251: Successfully fit background model for 2,296,059 bp. Use segment r for 0 bp 2025-01-31 09:58:55,535 DEBUG chr16:89851251-94482001: Successfully fit background model for 4,488,199 bp. Use segment r for 0 bp 2025-01-31 09:58:55,915 DEBUG chr16:94482001-98207768: Successfully fit background model for 3,467,888 bp. Use segment r for 0 bp 2025-01-31 09:59:01,816 DEBUG chr17:3002000-16149251: Successfully fit background model for 11,079,906 bp. Use segment r for 687 bp 2025-01-31 09:59:03,300 DEBUG chr17:16149251-23533251: Successfully fit background model for 6,077,853 bp. Use segment r for 3,332 bp 2025-01-31 09:59:03,705 DEBUG chr17:23533251-27600751: Successfully fit background model for 3,933,280 bp. Use segment r for 0 bp 2025-01-31 09:59:04,380 DEBUG chr17:27600751-33810001: Successfully fit background model for 5,877,972 bp. Use segment r for 0 bp 2025-01-31 09:59:04,643 DEBUG chr17:33810001-36357251: Successfully fit background model for 2,298,329 bp. Use segment r for 0 bp 2025-01-31 09:59:05,574 DEBUG chr17:36357251-44188251: Successfully fit background model for 6,841,342 bp. Use segment r for 0 bp 2025-01-31 09:59:05,725 DEBUG chr17:44188251-45535751: Successfully fit background model for 1,299,425 bp. Use segment r for 0 bp 2025-01-31 09:59:06,036 DEBUG chr17:45535751-48670251: Successfully fit background model for 3,034,404 bp. Use segment r for 0 bp 2025-01-31 09:59:07,173 DEBUG chr17:48670251-55931251: Successfully fit background model for 6,619,801 bp. Use segment r for 5,190 bp 2025-01-31 09:59:07,337 DEBUG chr17:55931251-57360751: Successfully fit background model for 1,400,003 bp. Use segment r for 0 bp 2025-01-31 09:59:07,584 DEBUG chr17:57360751-59558251: Successfully fit background model for 1,930,052 bp. Use segment r for 0 bp 2025-01-31 09:59:14,275 DEBUG chr17:59558251-90679251: Successfully fit background model for 29,226,292 bp. Use segment r for 1,112 bp 2025-01-31 09:59:14,978 DEBUG chr17:90679251-94987271: Successfully fit background model for 3,772,916 bp. Use segment r for 0 bp 2025-01-31 09:59:48,423 DEBUG chr18:3000500-24527751: Successfully fit background model for 19,560,437 bp. Use segment r for 0 bp 2025-01-31 09:59:49,064 DEBUG chr18:24527751-31607751: Successfully fit background model for 6,561,258 bp. Use segment r for 0 bp 2025-01-31 09:59:49,827 DEBUG chr18:31607751-39466751: Successfully fit background model for 7,443,031 bp. Use segment r for 0 bp 2025-01-31 09:59:51,943 DEBUG chr19:3094000-7496501: Successfully fit background model for 4,110,951 bp. Use segment r for 0 bp 2025-01-31 09:59:52,054 DEBUG chr18:39466751-60478251: Successfully fit background model for 19,404,736 bp. Use segment r for 0 bp 2025-01-31 09:59:52,123 DEBUG chr19:7496501-8712251: Successfully fit background model for 963,284 bp. Use segment r for 6,261 bp 2025-01-31 09:59:52,158 DEBUG chr19:8712251-9034001: Successfully fit background model for 311,009 bp. Use segment r for 0 bp 2025-01-31 09:59:52,206 DEBUG chr18:60478251-61695751: Successfully fit background model for 1,193,348 bp. Use segment r for 0 bp 2025-01-31 09:59:52,457 DEBUG chr19:9034001-12028251: Successfully fit background model for 2,553,540 bp. Use segment r for 0 bp 2025-01-31 09:59:52,751 DEBUG chr18:61695751-67192251: Successfully fit background model for 5,249,952 bp. Use segment r for 0 bp 2025-01-31 09:59:52,811 DEBUG chr18:67192251-67713251: Successfully fit background model for 510,571 bp. Use segment r for 0 bp 2025-01-31 09:59:53,375 DEBUG chr18:67713251-73571251: Successfully fit background model for 5,448,818 bp. Use segment r for 0 bp 2025-01-31 09:59:53,593 DEBUG chr19:12028251-23104251: Successfully fit background model for 10,281,363 bp. Use segment r for 0 bp 2025-01-31 09:59:53,620 DEBUG chr19:23104251-23205751: Successfully fit background model for 98,311 bp. Use segment r for 0 bp 2025-01-31 09:59:53,764 DEBUG chr18:73571251-78112001: Successfully fit background model for 4,268,022 bp. Use segment r for 0 bp 2025-01-31 09:59:53,819 DEBUG chr19:23205751-25147251: Successfully fit background model for 1,879,582 bp. Use segment r for 0 bp 2025-01-31 09:59:54,033 DEBUG chr19:25147251-27512251: Successfully fit background model for 2,234,434 bp. Use segment r for 0 bp 2025-01-31 09:59:54,378 DEBUG chr18:78112001-84847751: Successfully fit background model for 6,357,465 bp. Use segment r for 0 bp 2025-01-31 09:59:54,538 DEBUG chr19:27512251-33225251: Successfully fit background model for 5,470,678 bp. Use segment r for 0 bp 2025-01-31 09:59:54,724 DEBUG chr19:33225251-35307251: Successfully fit background model for 1,826,318 bp. Use segment r for 0 bp 2025-01-31 09:59:55,124 DEBUG chr18:84847751-90702639: Successfully fit background model for 4,967,627 bp. Use segment r for 14,920 bp 2025-01-31 09:59:55,284 DEBUG chr19:35307251-41791251: Successfully fit background model for 5,950,793 bp. Use segment r for 0 bp 2025-01-31 09:59:55,504 DEBUG chr19:41791251-44245751: Successfully fit background model for 2,359,683 bp. Use segment r for 0 bp 2025-01-31 09:59:55,756 DEBUG chr19:44245751-46960251: Successfully fit background model for 2,638,457 bp. Use segment r for 0 bp 2025-01-31 09:59:55,968 DEBUG chr19:46960251-49235251: Successfully fit background model for 2,175,027 bp. Use segment r for 0 bp 2025-01-31 09:59:56,163 DEBUG chr19:49235251-51414751: Successfully fit background model for 2,028,936 bp. Use segment r for 0 bp 2025-01-31 09:59:57,181 DEBUG chr19:51414751-61431566: Successfully fit background model for 9,454,939 bp. Use segment r for 0 bp 2025-01-31 10:00:58,046 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:00:58,047 INFO Calculating per-bp p-values 2025-01-31 10:00:58,048 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:00:58,114 DEBUG chr1: Calculating p-values 2025-01-31 10:00:58,118 DEBUG chr4: Calculating p-values 2025-01-31 10:00:58,118 DEBUG chr5: Calculating p-values 2025-01-31 10:00:58,118 DEBUG chr2: Calculating p-values 2025-01-31 10:00:58,120 DEBUG chrX: Calculating p-values 2025-01-31 10:00:58,121 DEBUG chr3: Calculating p-values 2025-01-31 10:01:20,349 DEBUG Saving p-values for chrX 2025-01-31 10:01:20,542 DEBUG Saving p-values for chr5 2025-01-31 10:01:20,712 DEBUG Saving p-values for chr4 2025-01-31 10:01:22,097 DEBUG Saving p-values for chr3 2025-01-31 10:01:25,938 DEBUG Saving p-values for chr2 2025-01-31 10:01:30,790 DEBUG Saving p-values for chr1 2025-01-31 10:01:50,370 DEBUG chr6: Calculating p-values 2025-01-31 10:01:50,370 DEBUG chr7: Calculating p-values 2025-01-31 10:01:51,210 DEBUG chr10: Calculating p-values 2025-01-31 10:01:54,478 DEBUG chr8: Calculating p-values 2025-01-31 10:02:07,505 DEBUG chr14: Calculating p-values 2025-01-31 10:02:12,338 DEBUG chr9: Calculating p-values 2025-01-31 10:02:14,500 DEBUG Saving p-values for chr7 2025-01-31 10:02:14,573 DEBUG Saving p-values for chr6 2025-01-31 10:02:14,586 DEBUG Saving p-values for chr10 2025-01-31 10:02:17,613 DEBUG Saving p-values for chr8 2025-01-31 10:02:26,299 DEBUG Saving p-values for chr14 2025-01-31 10:02:34,562 DEBUG chr11: Calculating p-values 2025-01-31 10:02:34,687 DEBUG Saving p-values for chr9 2025-01-31 10:02:38,073 DEBUG chr13: Calculating p-values 2025-01-31 10:02:38,551 DEBUG chr12: Calculating p-values 2025-01-31 10:02:39,017 DEBUG chr15: Calculating p-values 2025-01-31 10:02:45,423 DEBUG chr16: Calculating p-values 2025-01-31 10:02:54,351 DEBUG Saving p-values for chr11 2025-01-31 10:02:54,904 DEBUG chr17: Calculating p-values 2025-01-31 10:02:56,983 DEBUG Saving p-values for chr12 2025-01-31 10:02:57,570 DEBUG Saving p-values for chr13 2025-01-31 10:02:58,738 DEBUG Saving p-values for chr15 2025-01-31 10:03:01,251 DEBUG Saving p-values for chr16 2025-01-31 10:03:08,430 DEBUG Saving p-values for chr17 2025-01-31 10:03:13,374 DEBUG chrY: Calculating p-values 2025-01-31 10:03:15,909 DEBUG chr18: Calculating p-values 2025-01-31 10:03:15,981 DEBUG chr19: Calculating p-values 2025-01-31 10:03:24,266 DEBUG Saving p-values for chr19 2025-01-31 10:03:26,093 DEBUG Saving p-values for chr18 2025-01-31 10:03:43,273 DEBUG Results of calc_pvals emitted. 2025-01-31 10:03:43,273 INFO Converting threshold values to bigwig 2025-01-31 10:03:43,273 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:04:00,996 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:04:31,966 INFO Converting background quantile values to bigwig 2025-01-31 10:04:31,966 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:05:06,398 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:05:34,741 INFO Calculating per-bp FDRs 2025-01-31 10:05:34,743 DEBUG AG81954: Extracting raw P-values 2025-01-31 10:06:10,430 DEBUG AG81954: Computing FDR 2025-01-31 10:06:24,450 DEBUG AG81954: Saving FDRs to parquet 2025-01-31 10:07:11,088 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:07:11,091 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:07:11,092 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:07:14,682 DEBUG chr5: Calling hotspots 2025-01-31 10:07:14,771 DEBUG chr4: Calling hotspots 2025-01-31 10:07:14,924 DEBUG chr3: Calling hotspots 2025-01-31 10:07:15,028 DEBUG chrX: Calling hotspots 2025-01-31 10:07:15,425 DEBUG chr2: Calling hotspots 2025-01-31 10:07:15,522 DEBUG chr1: Calling hotspots 2025-01-31 10:07:21,396 DEBUG chr5: 3588 hotspots called 2025-01-31 10:07:21,900 DEBUG chr4: 3569 hotspots called 2025-01-31 10:07:22,513 DEBUG chr3: 2824 hotspots called 2025-01-31 10:07:22,916 DEBUG chrX: 2184 hotspots called 2025-01-31 10:07:23,418 DEBUG chr1: 3786 hotspots called 2025-01-31 10:07:23,503 DEBUG chr2: 4550 hotspots called 2025-01-31 10:07:24,359 DEBUG chr6: Calling hotspots 2025-01-31 10:07:24,638 DEBUG chr7: Calling hotspots 2025-01-31 10:07:25,326 DEBUG chr10: Calling hotspots 2025-01-31 10:07:25,422 DEBUG chr8: Calling hotspots 2025-01-31 10:07:25,644 DEBUG chr14: Calling hotspots 2025-01-31 10:07:25,783 DEBUG chr9: Calling hotspots 2025-01-31 10:07:28,077 DEBUG chr6: 2904 hotspots called 2025-01-31 10:07:28,348 DEBUG chr7: 3573 hotspots called 2025-01-31 10:07:28,472 DEBUG chr10: 2709 hotspots called 2025-01-31 10:07:28,498 DEBUG chr8: 2796 hotspots called 2025-01-31 10:07:28,743 DEBUG chr14: 1793 hotspots called 2025-01-31 10:07:28,931 DEBUG chr9: 3035 hotspots called 2025-01-31 10:07:32,801 DEBUG chr17: Calling hotspots 2025-01-31 10:07:32,900 DEBUG chr16: Calling hotspots 2025-01-31 10:07:32,976 DEBUG chr15: Calling hotspots 2025-01-31 10:07:33,408 DEBUG chr12: Calling hotspots 2025-01-31 10:07:33,409 DEBUG chr13: Calling hotspots 2025-01-31 10:07:33,571 DEBUG chr11: Calling hotspots 2025-01-31 10:07:36,409 DEBUG chr17: 2401 hotspots called 2025-01-31 10:07:36,830 DEBUG chr16: 1835 hotspots called 2025-01-31 10:07:37,341 DEBUG chr15: 2290 hotspots called 2025-01-31 10:07:38,059 DEBUG chr12: 2145 hotspots called 2025-01-31 10:07:38,102 DEBUG chr19: Calling hotspots 2025-01-31 10:07:38,168 DEBUG chr18: Calling hotspots 2025-01-31 10:07:38,596 DEBUG chr13: 2646 hotspots called 2025-01-31 10:07:38,675 DEBUG chr11: 4344 hotspots called 2025-01-31 10:07:39,621 DEBUG chr19: 1925 hotspots called 2025-01-31 10:07:40,175 DEBUG chr18: 1545 hotspots called 2025-01-31 10:07:40,420 DEBUG Results of call_hotspots emitted. 2025-01-31 10:07:40,449 INFO There are 56442 hotspots called at FDR=0.05 2025-01-31 10:07:43,289 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:07:43,289 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:07:52,196 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:07:52,257 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:07:52,261 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:07:52,831 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:07:53,353 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:07:54,929 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:08:04,843 DEBUG chr5: 4280 peaks called 2025-01-31 10:08:05,822 DEBUG chrX: 2416 peaks called 2025-01-31 10:08:05,957 DEBUG chr4: 4266 peaks called 2025-01-31 10:08:06,170 DEBUG chr2: 5381 peaks called 2025-01-31 10:08:06,370 DEBUG chr3: 3423 peaks called 2025-01-31 10:08:06,660 DEBUG chr1: 4502 peaks called 2025-01-31 10:08:12,151 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:08:12,350 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:08:12,434 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:08:12,647 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:08:12,747 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:08:12,928 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:08:17,262 DEBUG chr14: 2138 peaks called 2025-01-31 10:08:17,704 DEBUG chr8: 3398 peaks called 2025-01-31 10:08:17,712 DEBUG chr9: 3668 peaks called 2025-01-31 10:08:18,245 DEBUG chr10: 3238 peaks called 2025-01-31 10:08:18,263 DEBUG chr6: 3410 peaks called 2025-01-31 10:08:18,756 DEBUG chr7: 4380 peaks called 2025-01-31 10:08:22,691 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:08:22,974 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:08:23,010 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:08:23,101 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:08:23,136 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:08:23,521 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:08:25,729 DEBUG chr16: 2181 peaks called 2025-01-31 10:08:25,788 DEBUG chr17: 2950 peaks called 2025-01-31 10:08:26,384 DEBUG chr15: 2775 peaks called 2025-01-31 10:08:26,667 DEBUG chr12: 2536 peaks called 2025-01-31 10:08:26,829 DEBUG chr11: 5353 peaks called 2025-01-31 10:08:27,208 DEBUG chr13: 3221 peaks called 2025-01-31 10:08:28,350 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:08:28,556 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:08:30,043 DEBUG chr19: 2365 peaks called 2025-01-31 10:08:30,972 DEBUG chr18: 1796 peaks called 2025-01-31 10:08:31,377 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:08:31,408 INFO There are 67677 peaks called at FDR=0.05 2025-01-31 10:08:32,708 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:08:32,708 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:08:36,309 DEBUG chr4: Calling hotspots 2025-01-31 10:08:36,387 DEBUG chrX: Calling hotspots 2025-01-31 10:08:36,402 DEBUG chr5: Calling hotspots 2025-01-31 10:08:36,407 DEBUG chr3: Calling hotspots 2025-01-31 10:08:36,864 DEBUG chr2: Calling hotspots 2025-01-31 10:08:37,439 DEBUG chr1: Calling hotspots 2025-01-31 10:08:40,336 DEBUG chrX: 1614 hotspots called 2025-01-31 10:08:40,348 DEBUG chr5: 3062 hotspots called 2025-01-31 10:08:40,423 DEBUG chr4: 3077 hotspots called 2025-01-31 10:08:40,483 DEBUG chr3: 2380 hotspots called 2025-01-31 10:08:41,441 DEBUG chr2: 3862 hotspots called 2025-01-31 10:08:42,345 DEBUG chr1: 3123 hotspots called 2025-01-31 10:08:43,009 DEBUG chr10: Calling hotspots 2025-01-31 10:08:43,092 DEBUG chr6: Calling hotspots 2025-01-31 10:08:43,280 DEBUG chr7: Calling hotspots 2025-01-31 10:08:43,364 DEBUG chr8: Calling hotspots 2025-01-31 10:08:43,703 DEBUG chr14: Calling hotspots 2025-01-31 10:08:44,505 DEBUG chr9: Calling hotspots 2025-01-31 10:08:46,518 DEBUG chr10: 2324 hotspots called 2025-01-31 10:08:46,552 DEBUG chr6: 2418 hotspots called 2025-01-31 10:08:46,649 DEBUG chr8: 2374 hotspots called 2025-01-31 10:08:46,768 DEBUG chr7: 3063 hotspots called 2025-01-31 10:08:46,916 DEBUG chr14: 1495 hotspots called 2025-01-31 10:08:47,835 DEBUG chr9: 2640 hotspots called 2025-01-31 10:08:48,691 DEBUG chr11: Calling hotspots 2025-01-31 10:08:48,823 DEBUG chr16: Calling hotspots 2025-01-31 10:08:48,935 DEBUG chr13: Calling hotspots 2025-01-31 10:08:48,993 DEBUG chr15: Calling hotspots 2025-01-31 10:08:49,199 DEBUG chr12: Calling hotspots 2025-01-31 10:08:49,433 DEBUG chr17: Calling hotspots 2025-01-31 10:08:50,981 DEBUG chr16: 1530 hotspots called 2025-01-31 10:08:51,550 DEBUG chr11: 3784 hotspots called 2025-01-31 10:08:51,594 DEBUG chr15: 1936 hotspots called 2025-01-31 10:08:51,714 DEBUG chr13: 2244 hotspots called 2025-01-31 10:08:51,864 DEBUG chr17: 2084 hotspots called 2025-01-31 10:08:52,123 DEBUG chr12: 1787 hotspots called 2025-01-31 10:08:52,374 DEBUG chr19: Calling hotspots 2025-01-31 10:08:52,401 DEBUG chr18: Calling hotspots 2025-01-31 10:08:53,701 DEBUG chr19: 1669 hotspots called 2025-01-31 10:08:54,465 DEBUG chr18: 1275 hotspots called 2025-01-31 10:08:54,659 DEBUG Results of call_hotspots emitted. 2025-01-31 10:08:54,685 INFO There are 47741 hotspots called at FDR=0.01 2025-01-31 10:08:56,860 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:08:56,860 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:09:04,567 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:09:04,600 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:09:04,971 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:09:05,555 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:09:06,276 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:09:06,650 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:09:09,033 DEBUG chr5: 3637 peaks called 2025-01-31 10:09:09,143 DEBUG chr4: 3674 peaks called 2025-01-31 10:09:10,083 DEBUG chr3: 2904 peaks called 2025-01-31 10:09:10,914 DEBUG chrX: 1825 peaks called 2025-01-31 10:09:11,898 DEBUG chr1: 3749 peaks called 2025-01-31 10:09:11,911 DEBUG chr2: 4560 peaks called 2025-01-31 10:09:21,687 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:09:21,718 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:09:21,817 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:09:21,837 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:09:22,151 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:09:22,233 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:09:25,421 DEBUG chr8: 2874 peaks called 2025-01-31 10:09:25,706 DEBUG chr9: 3171 peaks called 2025-01-31 10:09:25,921 DEBUG chr14: 1811 peaks called 2025-01-31 10:09:26,093 DEBUG chr10: 2767 peaks called 2025-01-31 10:09:26,266 DEBUG chr7: 3771 peaks called 2025-01-31 10:09:26,819 DEBUG chr6: 2837 peaks called 2025-01-31 10:09:30,569 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:09:30,951 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:09:31,124 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:09:31,189 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:09:31,637 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:09:31,696 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:09:33,523 DEBUG chr16: 1831 peaks called 2025-01-31 10:09:33,835 DEBUG chr17: 2540 peaks called 2025-01-31 10:09:33,902 DEBUG chr15: 2336 peaks called 2025-01-31 10:09:34,695 DEBUG chr11: 4630 peaks called 2025-01-31 10:09:35,220 DEBUG chr12: 2111 peaks called 2025-01-31 10:09:35,368 DEBUG chr13: 2730 peaks called 2025-01-31 10:09:35,990 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:09:36,463 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:09:37,774 DEBUG chr19: 2036 peaks called 2025-01-31 10:09:38,989 DEBUG chr18: 1488 peaks called 2025-01-31 10:09:39,266 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:09:39,293 INFO There are 57282 peaks called at FDR=0.01 2025-01-31 10:09:40,305 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:09:40,306 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:09:43,689 DEBUG chr5: Calling hotspots 2025-01-31 10:09:43,710 DEBUG chr4: Calling hotspots 2025-01-31 10:09:43,856 DEBUG chr3: Calling hotspots 2025-01-31 10:09:44,032 DEBUG chrX: Calling hotspots 2025-01-31 10:09:44,364 DEBUG chr2: Calling hotspots 2025-01-31 10:09:44,493 DEBUG chr1: Calling hotspots 2025-01-31 10:09:47,264 DEBUG chr4: 2664 hotspots called 2025-01-31 10:09:47,374 DEBUG chr5: 2647 hotspots called 2025-01-31 10:09:47,408 DEBUG chr3: 2058 hotspots called 2025-01-31 10:09:48,153 DEBUG chrX: 1261 hotspots called 2025-01-31 10:09:48,870 DEBUG chr1: 2663 hotspots called 2025-01-31 10:09:48,928 DEBUG chr2: 3288 hotspots called 2025-01-31 10:09:49,911 DEBUG chr10: Calling hotspots 2025-01-31 10:09:50,179 DEBUG chr6: Calling hotspots 2025-01-31 10:09:50,253 DEBUG chr7: Calling hotspots 2025-01-31 10:09:50,628 DEBUG chr8: Calling hotspots 2025-01-31 10:09:50,943 DEBUG chr14: Calling hotspots 2025-01-31 10:09:51,255 DEBUG chr9: Calling hotspots 2025-01-31 10:09:53,387 DEBUG chr10: 1971 hotspots called 2025-01-31 10:09:53,486 DEBUG chr6: 2019 hotspots called 2025-01-31 10:09:53,524 DEBUG chr8: 2070 hotspots called 2025-01-31 10:09:53,795 DEBUG chr14: 1295 hotspots called 2025-01-31 10:09:54,223 DEBUG chr7: 2698 hotspots called 2025-01-31 10:09:54,373 DEBUG chr9: 2266 hotspots called 2025-01-31 10:09:55,721 DEBUG chr11: Calling hotspots 2025-01-31 10:09:55,757 DEBUG chr12: Calling hotspots 2025-01-31 10:09:55,767 DEBUG chr13: Calling hotspots 2025-01-31 10:09:55,820 DEBUG chr15: Calling hotspots 2025-01-31 10:09:56,218 DEBUG chr17: Calling hotspots 2025-01-31 10:09:56,289 DEBUG chr16: Calling hotspots 2025-01-31 10:09:58,282 DEBUG chr15: 1667 hotspots called 2025-01-31 10:09:58,437 DEBUG chr17: 1808 hotspots called 2025-01-31 10:09:58,496 DEBUG chr16: 1277 hotspots called 2025-01-31 10:09:58,769 DEBUG chr13: 1915 hotspots called 2025-01-31 10:09:58,783 DEBUG chr11: 3284 hotspots called 2025-01-31 10:09:58,787 DEBUG chr12: 1482 hotspots called 2025-01-31 10:10:01,832 DEBUG chr19: Calling hotspots 2025-01-31 10:10:02,047 DEBUG chr18: Calling hotspots 2025-01-31 10:10:03,317 DEBUG chr19: 1449 hotspots called 2025-01-31 10:10:04,000 DEBUG chr18: 1063 hotspots called 2025-01-31 10:10:04,190 DEBUG Results of call_hotspots emitted. 2025-01-31 10:10:04,219 INFO There are 40845 hotspots called at FDR=0.001 2025-01-31 10:10:06,101 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:10:06,101 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:10:14,915 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:10:14,965 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:10:14,998 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:10:15,075 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:10:15,541 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:10:15,577 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:10:19,232 DEBUG chr5: 3089 peaks called 2025-01-31 10:10:19,421 DEBUG chr3: 2463 peaks called 2025-01-31 10:10:19,976 DEBUG chr4: 3135 peaks called 2025-01-31 10:10:20,223 DEBUG chrX: 1441 peaks called 2025-01-31 10:10:20,587 DEBUG chr2: 3867 peaks called 2025-01-31 10:10:22,056 DEBUG chr1: 3193 peaks called 2025-01-31 10:10:25,911 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:10:25,987 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:10:26,261 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:10:26,343 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:10:26,402 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:10:27,569 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:10:29,963 DEBUG chr6: 2357 peaks called 2025-01-31 10:10:29,966 DEBUG chr10: 2318 peaks called 2025-01-31 10:10:30,140 DEBUG chr7: 3262 peaks called 2025-01-31 10:10:30,153 DEBUG chr14: 1539 peaks called 2025-01-31 10:10:30,162 DEBUG chr8: 2453 peaks called 2025-01-31 10:10:31,667 DEBUG chr9: 2675 peaks called 2025-01-31 10:10:34,493 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:10:34,949 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:10:35,370 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:10:35,505 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:10:35,847 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:10:36,219 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:10:37,294 DEBUG chr16: 1529 peaks called 2025-01-31 10:10:38,005 DEBUG chr15: 1981 peaks called 2025-01-31 10:10:38,874 DEBUG chr12: 1744 peaks called 2025-01-31 10:10:39,175 DEBUG chr17: 2170 peaks called 2025-01-31 10:10:39,198 DEBUG chr13: 2318 peaks called 2025-01-31 10:10:39,700 DEBUG chr11: 3949 peaks called 2025-01-31 10:10:41,063 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:10:42,165 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:10:42,758 DEBUG chr19: 1737 peaks called 2025-01-31 10:10:44,821 DEBUG chr18: 1249 peaks called 2025-01-31 10:10:45,129 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:10:45,157 INFO There are 48469 peaks called at FDR=0.001 2025-01-31 10:10:46,048 INFO Saving density 2025-01-31 10:10:46,049 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:10:59,769 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:11:02,863 DEBUG Converting density to bigwig 2025-01-31 10:11:42,701 INFO Program finished