2025-01-31 09:31:52,964 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:52,968 INFO Extracting cutcounts from bam file 2025-01-31 09:33:53,439 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:53,494 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:53,498 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:53,498 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:53,498 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:53,499 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:53,499 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:54,524 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:33:56,386 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:33:56,387 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:33:56,403 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:33:56,422 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:33:56,470 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:33:56,514 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:33:57,237 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:33:57,430 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:33:57,499 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:33:57,653 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:33:57,712 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:33:57,917 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:33:58,004 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:33:58,337 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:33:59,600 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:33:59,600 INFO Total cutcounts = 18021278 2025-01-31 09:33:59,606 INFO Smoothing signal using MODWT 2025-01-31 09:33:59,608 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:33:59,736 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:59,740 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:59,741 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:59,743 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:59,744 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:59,744 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:37,155 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:38,551 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:38,837 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:39,391 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:11,999 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:25,312 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:25,115 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:27,989 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:41,386 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:42,328 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:49,398 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:13,622 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:08,714 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:10,078 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:11,006 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:27,987 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:41:27,987 INFO Estimating parameters of background model 2025-01-31 09:41:27,987 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:41:32,576 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:41:32,780 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:41:32,855 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:41:33,396 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:41:33,732 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:41:34,188 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:41:53,023 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:41:53,025 DEBUG chr3: Signal quantile: 0.990. signal threshold: 10. Best RMSEA: 0.013 2025-01-31 09:41:53,987 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:41:53,989 DEBUG chr5: Signal quantile: 0.989. signal threshold: 11. Best RMSEA: 0.012 2025-01-31 09:41:55,246 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:41:55,249 DEBUG chr4: Signal quantile: 0.989. signal threshold: 11. Best RMSEA: 0.013 2025-01-31 09:41:55,465 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:41:55,467 DEBUG chrX: Signal quantile: 0.995. signal threshold: 9. Best RMSEA: 0.017 2025-01-31 09:41:57,410 DEBUG chr3 total SNP count: 262092 2025-01-31 09:41:57,410 DEBUG chr3 length: 160039680 2025-01-31 09:41:57,410 DEBUG ----------------------------------------- 2025-01-31 09:41:57,410 INFO Processing SNPs in chr3 2025-01-31 09:41:57,694 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 262092)] 2025-01-31 09:41:57,735 DEBUG chr5 total SNP count: 253338 2025-01-31 09:41:57,735 DEBUG chr5 length: 151834684 2025-01-31 09:41:57,735 DEBUG ----------------------------------------- 2025-01-31 09:41:57,735 INFO Processing SNPs in chr5 2025-01-31 09:41:57,884 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:58,010 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 253338)] 2025-01-31 09:41:58,194 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:58,365 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:41:58,413 DEBUG chr2: Signal quantile: 0.989. signal threshold: 11. Best RMSEA: 0.013 2025-01-31 09:41:58,952 DEBUG chr4 total SNP count: 255779 2025-01-31 09:41:58,952 DEBUG chr4 length: 156508116 2025-01-31 09:41:58,952 DEBUG ----------------------------------------- 2025-01-31 09:41:58,952 INFO Processing SNPs in chr4 2025-01-31 09:41:59,382 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 64024), (64024, 255779)] 2025-01-31 09:41:59,518 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:59,867 DEBUG chrX total SNP count: 241188 2025-01-31 09:41:59,867 DEBUG chrX length: 171031299 2025-01-31 09:41:59,867 DEBUG ----------------------------------------- 2025-01-31 09:41:59,868 INFO Processing SNPs in chrX 2025-01-31 09:42:00,273 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32497), (32497, 32544), (32544, 172523), (172523, 172527), (172527, 241188)] 2025-01-31 09:42:00,394 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:00,563 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:00,576 DEBUG chr1: Signal quantile: 0.991. signal threshold: 11. Best RMSEA: 0.012 2025-01-31 09:42:02,934 DEBUG chr2 total SNP count: 310532 2025-01-31 09:42:02,934 DEBUG chr2 length: 182113224 2025-01-31 09:42:02,934 DEBUG ----------------------------------------- 2025-01-31 09:42:02,934 INFO Processing SNPs in chr2 2025-01-31 09:42:03,447 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 302684), (302684, 310532)] 2025-01-31 09:42:03,667 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:04,324 DEBUG Segmenting atomic regions: 2025-01-31 09:42:04,440 DEBUG Processing 1/107 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,286 DEBUG Processing 2/107 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,419 DEBUG chr1 total SNP count: 335677 2025-01-31 09:42:05,419 DEBUG chr1 length: 195471971 2025-01-31 09:42:05,419 DEBUG ----------------------------------------- 2025-01-31 09:42:05,419 INFO Processing SNPs in chr1 2025-01-31 09:42:05,607 DEBUG Processing 3/107 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,784 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 335677)] 2025-01-31 09:42:05,852 DEBUG Processing 4/107 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,028 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:06,100 DEBUG Processing 5/107 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,375 DEBUG Processing 6/107 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,656 DEBUG Processing 7/107 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,977 DEBUG Processing 8/107 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:07,207 DEBUG Segmenting atomic regions: 2025-01-31 09:42:07,315 DEBUG Processing 9/107 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:07,330 DEBUG Processing 1/212 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:07,650 DEBUG Processing 10/107 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,025 DEBUG Processing 11/107 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,155 DEBUG Processing 2/212 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:08,394 DEBUG Processing 12/107 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,502 DEBUG Processing 3/212 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:08,726 DEBUG Processing 13/107 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,814 DEBUG Processing 4/212 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,037 DEBUG Processing 14/107 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,136 DEBUG Processing 5/212 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,317 DEBUG Processing 15/107 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,395 DEBUG Processing 6/212 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,589 DEBUG Processing 16/107 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,649 DEBUG Processing 7/212 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,860 DEBUG Processing 17/107 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,886 DEBUG Processing 8/212 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,122 DEBUG Processing 18/107 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,122 DEBUG Processing 9/212 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,351 DEBUG Processing 19/107 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,358 DEBUG Processing 10/212 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,585 DEBUG Processing 20/107 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,596 DEBUG Processing 11/212 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,811 DEBUG Processing 21/107 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,830 DEBUG Processing 12/212 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,051 DEBUG Processing 22/107 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,061 DEBUG Processing 13/212 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,294 DEBUG Processing 14/212 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,300 DEBUG Processing 23/107 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,531 DEBUG Processing 15/212 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,533 DEBUG Processing 24/107 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,764 DEBUG Processing 25/107 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,767 DEBUG Processing 16/212 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,998 DEBUG Processing 26/107 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,009 DEBUG Processing 17/212 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,232 DEBUG Processing 27/107 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,258 DEBUG Processing 18/212 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,466 DEBUG Processing 28/107 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,507 DEBUG Processing 19/212 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,694 DEBUG Processing 29/107 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,745 DEBUG Processing 20/212 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,926 DEBUG Processing 30/107 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,986 DEBUG Processing 21/212 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,166 DEBUG Processing 31/107 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,222 DEBUG Processing 22/212 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,398 DEBUG Processing 32/107 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,457 DEBUG Processing 23/212 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,625 DEBUG Processing 33/107 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,688 DEBUG Processing 24/212 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,854 DEBUG Processing 34/107 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,921 DEBUG Processing 25/212 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,084 DEBUG Processing 35/107 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,158 DEBUG Processing 26/212 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,311 DEBUG Processing 36/107 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,393 DEBUG Processing 27/212 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,540 DEBUG Processing 37/107 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,633 DEBUG Processing 28/212 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,790 DEBUG Processing 38/107 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,868 DEBUG Processing 29/212 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,053 DEBUG Processing 39/107 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,109 DEBUG Processing 30/212 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,301 DEBUG Processing 40/107 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,366 DEBUG Processing 31/212 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,533 DEBUG Processing 41/107 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,595 DEBUG Processing 32/212 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,770 DEBUG Processing 42/107 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,829 DEBUG Processing 33/212 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,009 DEBUG Processing 43/107 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,073 DEBUG Processing 34/212 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,253 DEBUG Processing 44/107 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,314 DEBUG Processing 35/212 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,508 DEBUG Processing 45/107 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,554 DEBUG Processing 36/212 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,766 DEBUG Processing 46/107 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,799 DEBUG Processing 37/212 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,008 DEBUG Processing 47/107 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,039 DEBUG Processing 38/212 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,245 DEBUG Processing 48/107 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,283 DEBUG Processing 39/212 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,488 DEBUG Processing 49/107 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,531 DEBUG Processing 40/212 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,739 DEBUG Processing 50/107 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,797 DEBUG Processing 41/212 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,074 DEBUG Processing 51/107 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,130 DEBUG Processing 42/212 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,443 DEBUG Processing 52/107 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,493 DEBUG Processing 43/212 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,801 DEBUG Processing 53/107 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,838 DEBUG Processing 44/212 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,154 DEBUG Processing 54/107 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,213 DEBUG Processing 45/212 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,502 DEBUG Processing 55/107 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,576 DEBUG Processing 46/212 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,845 DEBUG Processing 56/107 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,935 DEBUG Processing 47/212 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,108 DEBUG Processing 57/107 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,179 DEBUG Processing 48/212 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,346 DEBUG Processing 58/107 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,418 DEBUG Processing 49/212 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,588 DEBUG Processing 59/107 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,663 DEBUG Processing 50/212 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,860 DEBUG Processing 60/107 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,009 DEBUG Processing 51/212 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,168 DEBUG Processing 61/107 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,366 DEBUG Processing 52/212 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,534 DEBUG Processing 62/107 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,755 DEBUG Processing 53/212 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,877 DEBUG Processing 63/107 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,079 DEBUG Processing 54/212 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,215 DEBUG Processing 64/107 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,396 DEBUG Processing 55/212 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,523 DEBUG Processing 65/107 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,641 DEBUG Processing 56/212 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,803 DEBUG Processing 66/107 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,952 DEBUG Processing 57/212 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,105 DEBUG Processing 67/107 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,261 DEBUG Processing 58/212 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,430 DEBUG Processing 68/107 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,599 DEBUG Processing 59/212 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,692 DEBUG Processing 69/107 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:23,909 DEBUG Processing 60/212 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,934 DEBUG Processing 70/107 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,216 DEBUG Processing 61/212 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,225 DEBUG Processing 71/107 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,451 DEBUG Processing 62/212 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,455 DEBUG Processing 72/107 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,699 DEBUG Processing 73/107 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,701 DEBUG Processing 63/212 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,964 DEBUG Processing 74/107 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:24,972 DEBUG Processing 64/212 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,259 DEBUG Processing 75/107 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,270 DEBUG Processing 65/212 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,532 DEBUG Processing 76/107 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,551 DEBUG Processing 66/212 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,761 DEBUG Processing 77/107 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:25,789 DEBUG Processing 67/212 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,987 DEBUG Processing 78/107 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,023 DEBUG Processing 68/212 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,214 DEBUG Processing 79/107 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,257 DEBUG Processing 69/212 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,440 DEBUG Processing 80/107 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,494 DEBUG Processing 70/212 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,665 DEBUG Processing 81/107 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,730 DEBUG Processing 71/212 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,884 DEBUG Processing 82/107 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:26,962 DEBUG Processing 72/212 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,104 DEBUG Processing 83/107 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,194 DEBUG Processing 73/212 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,326 DEBUG Processing 84/107 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,424 DEBUG Processing 74/212 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,561 DEBUG Processing 85/107 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,654 DEBUG Processing 75/212 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,804 DEBUG Processing 86/107 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:27,886 DEBUG Processing 76/212 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,064 DEBUG Processing 87/107 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,122 DEBUG Processing 77/212 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,300 DEBUG Processing 88/107 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,350 DEBUG Processing 78/212 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,474 DEBUG Segmenting atomic regions: 2025-01-31 09:42:28,531 DEBUG Processing 89/107 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,580 DEBUG Processing 79/212 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,595 DEBUG Processing 1/843 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,767 DEBUG Processing 90/107 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:28,818 DEBUG Processing 80/212 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,999 DEBUG Processing 91/107 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,012 DEBUG Segmenting atomic regions: 2025-01-31 09:42:29,053 DEBUG Processing 81/212 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,135 DEBUG Processing 1/872 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,231 DEBUG Processing 92/107 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,286 DEBUG Processing 82/212 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,458 DEBUG Processing 93/107 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,516 DEBUG Processing 83/212 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,524 DEBUG Processing 2/843 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,689 DEBUG Processing 94/107 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,747 DEBUG Processing 3/843 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,748 DEBUG Processing 84/212 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,887 DEBUG Processing 2/872 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,911 DEBUG Processing 95/107 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:29,974 DEBUG Processing 4/843 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,977 DEBUG Processing 85/212 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,127 DEBUG Processing 3/872 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,137 DEBUG Processing 96/107 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,200 DEBUG Processing 5/843 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,207 DEBUG Processing 86/212 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,362 DEBUG Processing 97/107 atomic regions from SNP 28896 to 29496 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,365 DEBUG Processing 4/872 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,433 DEBUG Processing 6/843 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,439 DEBUG Processing 87/212 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,584 DEBUG Processing 98/107 atomic regions from SNP 29196 to 29796 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,605 DEBUG Processing 5/872 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,658 DEBUG Processing 7/843 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,674 DEBUG Processing 88/212 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,803 DEBUG Processing 99/107 atomic regions from SNP 29496 to 30096 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:30,843 DEBUG Processing 6/872 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,887 DEBUG Processing 8/843 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,907 DEBUG Processing 89/212 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,024 DEBUG Processing 100/107 atomic regions from SNP 29796 to 30396 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,082 DEBUG Processing 7/872 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,116 DEBUG Processing 9/843 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,133 DEBUG Processing 90/212 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,245 DEBUG Processing 101/107 atomic regions from SNP 30096 to 30696 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,320 DEBUG Processing 8/872 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,349 DEBUG Processing 10/843 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,360 DEBUG Processing 91/212 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,467 DEBUG Processing 102/107 atomic regions from SNP 30396 to 30996 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,556 DEBUG Processing 9/872 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,583 DEBUG Processing 11/843 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,587 DEBUG Processing 92/212 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,688 DEBUG Processing 103/107 atomic regions from SNP 30696 to 31296 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:31,792 DEBUG Processing 10/872 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,816 DEBUG Processing 12/843 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,819 DEBUG Processing 93/212 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,908 DEBUG Processing 104/107 atomic regions from SNP 30996 to 31596 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,027 DEBUG Processing 11/872 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,048 DEBUG Processing 13/843 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,048 DEBUG Processing 94/212 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,130 DEBUG Processing 105/107 atomic regions from SNP 31296 to 31896 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,265 DEBUG Processing 12/872 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,280 DEBUG Processing 95/212 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,295 DEBUG Processing 14/843 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,348 DEBUG Processing 106/107 atomic regions from SNP 31596 to 32196 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,494 DEBUG Processing 13/872 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,514 DEBUG Processing 96/212 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,570 DEBUG Processing 107/107 atomic regions from SNP 31896 to 32496 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:32,597 DEBUG Processing 15/843 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,682 DEBUG Unique SNPs positions in subchromosome 1: 32497 2025-01-31 09:42:32,725 DEBUG Processing 14/872 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,732 DEBUG Subchromosome time: 32.33773427084088, subchromosome SNPs: 32497 2025-01-31 09:42:32,753 DEBUG Processing 97/212 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,767 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:32,824 DEBUG Processing 16/843 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,959 DEBUG Processing 15/872 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,987 DEBUG Processing 98/212 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,046 DEBUG Processing 17/843 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,195 DEBUG Processing 16/872 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,221 DEBUG Processing 99/212 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,276 DEBUG Processing 18/843 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,432 DEBUG Processing 17/872 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,454 DEBUG Processing 100/212 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,500 DEBUG Processing 19/843 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,672 DEBUG Processing 18/872 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,689 DEBUG Processing 101/212 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,738 DEBUG Processing 20/843 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,912 DEBUG Processing 19/872 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,923 DEBUG Processing 102/212 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,971 DEBUG Processing 21/843 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,153 DEBUG Processing 20/872 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,170 DEBUG Processing 103/212 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,208 DEBUG Processing 22/843 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,391 DEBUG Processing 21/872 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,410 DEBUG Processing 104/212 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,443 DEBUG Processing 23/843 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,635 DEBUG Processing 22/872 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,646 DEBUG Processing 105/212 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,683 DEBUG Processing 24/843 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,877 DEBUG Processing 23/872 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,880 DEBUG Processing 106/212 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,917 DEBUG Processing 25/843 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,115 DEBUG Processing 107/212 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,122 DEBUG Processing 24/872 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,154 DEBUG Processing 26/843 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,349 DEBUG Processing 108/212 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,364 DEBUG Processing 25/872 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,387 DEBUG Processing 27/843 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,585 DEBUG Processing 109/212 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,607 DEBUG Processing 26/872 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,624 DEBUG Processing 28/843 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,822 DEBUG Processing 110/212 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,847 DEBUG Processing 27/872 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,859 DEBUG Processing 29/843 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,059 DEBUG Processing 111/212 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,089 DEBUG Processing 28/872 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,098 DEBUG Processing 30/843 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,293 DEBUG Processing 112/212 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,329 DEBUG Processing 29/872 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,333 DEBUG Processing 31/843 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,523 DEBUG Processing 113/212 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,569 DEBUG Processing 30/872 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,571 DEBUG Processing 32/843 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,753 DEBUG Processing 114/212 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,807 DEBUG Processing 33/843 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,810 DEBUG Processing 31/872 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,982 DEBUG Processing 115/212 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,045 DEBUG Processing 34/843 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,064 DEBUG Processing 32/872 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,211 DEBUG Processing 116/212 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,279 DEBUG Processing 35/843 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,315 DEBUG Processing 33/872 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,437 DEBUG Processing 117/212 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,511 DEBUG Processing 36/843 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,554 DEBUG Processing 34/872 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,670 DEBUG Processing 118/212 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,744 DEBUG Processing 37/843 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,789 DEBUG Processing 35/872 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,900 DEBUG Processing 119/212 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,975 DEBUG Processing 38/843 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,024 DEBUG Processing 36/872 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,140 DEBUG Processing 120/212 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,208 DEBUG Processing 39/843 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,256 DEBUG Processing 37/872 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,374 DEBUG Processing 121/212 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,436 DEBUG Processing 40/843 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,487 DEBUG Processing 38/872 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,610 DEBUG Processing 122/212 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,668 DEBUG Processing 41/843 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,733 DEBUG Processing 39/872 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,843 DEBUG Processing 123/212 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,900 DEBUG Processing 42/843 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,973 DEBUG Processing 40/872 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,080 DEBUG Processing 124/212 atomic regions from SNP 37023 to 37623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,128 DEBUG Processing 43/843 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,203 DEBUG Processing 41/872 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,315 DEBUG Processing 125/212 atomic regions from SNP 37323 to 37923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,358 DEBUG Processing 44/843 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,432 DEBUG Processing 42/872 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,548 DEBUG Processing 126/212 atomic regions from SNP 37623 to 38223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,588 DEBUG Processing 45/843 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,661 DEBUG Processing 43/872 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,782 DEBUG Segmenting atomic regions: 2025-01-31 09:42:39,784 DEBUG Processing 127/212 atomic regions from SNP 37923 to 38523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,821 DEBUG Processing 46/843 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,889 DEBUG Processing 44/872 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,924 DEBUG Processing 1/1007 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,019 DEBUG Processing 128/212 atomic regions from SNP 38223 to 38823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,059 DEBUG Processing 47/843 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,122 DEBUG Processing 45/872 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,258 DEBUG Processing 129/212 atomic regions from SNP 38523 to 39123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,300 DEBUG Processing 48/843 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,358 DEBUG Processing 46/872 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,495 DEBUG Processing 130/212 atomic regions from SNP 38823 to 39423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,538 DEBUG Processing 49/843 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,594 DEBUG Processing 47/872 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,728 DEBUG Processing 131/212 atomic regions from SNP 39123 to 39723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,774 DEBUG Processing 50/843 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,803 DEBUG Processing 2/1007 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,830 DEBUG Processing 48/872 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,955 DEBUG Processing 132/212 atomic regions from SNP 39423 to 40023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,011 DEBUG Processing 51/843 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,073 DEBUG Processing 49/872 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,087 DEBUG Processing 3/1007 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,185 DEBUG Processing 133/212 atomic regions from SNP 39723 to 40323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,249 DEBUG Processing 52/843 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,319 DEBUG Processing 50/872 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,355 DEBUG Processing 4/1007 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,414 DEBUG Processing 134/212 atomic regions from SNP 40023 to 40623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,486 DEBUG Processing 53/843 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,560 DEBUG Processing 51/872 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,614 DEBUG Processing 5/1007 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,643 DEBUG Processing 135/212 atomic regions from SNP 40323 to 40923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,722 DEBUG Processing 54/843 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,800 DEBUG Processing 52/872 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,874 DEBUG Processing 136/212 atomic regions from SNP 40623 to 41223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,877 DEBUG Processing 6/1007 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,956 DEBUG Processing 55/843 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,037 DEBUG Processing 53/872 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,110 DEBUG Processing 137/212 atomic regions from SNP 40923 to 41523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,137 DEBUG Processing 7/1007 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,187 DEBUG Processing 56/843 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,271 DEBUG Processing 54/872 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,347 DEBUG Processing 138/212 atomic regions from SNP 41223 to 41823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,400 DEBUG Processing 8/1007 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,417 DEBUG Processing 57/843 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,503 DEBUG Processing 55/872 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,585 DEBUG Processing 139/212 atomic regions from SNP 41523 to 42123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,652 DEBUG Processing 58/843 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,666 DEBUG Processing 9/1007 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,734 DEBUG Processing 56/872 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,822 DEBUG Processing 140/212 atomic regions from SNP 41823 to 42423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,889 DEBUG Processing 59/843 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,931 DEBUG Processing 10/1007 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,965 DEBUG Processing 57/872 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,061 DEBUG Processing 141/212 atomic regions from SNP 42123 to 42723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,128 DEBUG Processing 60/843 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,193 DEBUG Processing 11/1007 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,197 DEBUG Processing 58/872 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,298 DEBUG Processing 142/212 atomic regions from SNP 42423 to 43023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,366 DEBUG Processing 61/843 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,429 DEBUG Processing 59/872 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,455 DEBUG Processing 12/1007 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,533 DEBUG Processing 143/212 atomic regions from SNP 42723 to 43323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,603 DEBUG Processing 62/843 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,664 DEBUG Processing 60/872 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,713 DEBUG Processing 13/1007 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,765 DEBUG Processing 144/212 atomic regions from SNP 43023 to 43623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,839 DEBUG Processing 63/843 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,895 DEBUG Processing 61/872 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,967 DEBUG Processing 14/1007 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,007 DEBUG Processing 145/212 atomic regions from SNP 43323 to 43923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,075 DEBUG Processing 64/843 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,129 DEBUG Processing 62/872 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,225 DEBUG Processing 15/1007 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,241 DEBUG Processing 146/212 atomic regions from SNP 43623 to 44223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,308 DEBUG Processing 65/843 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,363 DEBUG Processing 63/872 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,486 DEBUG Processing 147/212 atomic regions from SNP 43923 to 44523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,490 DEBUG Processing 16/1007 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,550 DEBUG Processing 66/843 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,613 DEBUG Processing 64/872 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,724 DEBUG Processing 148/212 atomic regions from SNP 44223 to 44823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,757 DEBUG Processing 17/1007 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,780 DEBUG Processing 67/843 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,854 DEBUG Processing 65/872 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,958 DEBUG Processing 149/212 atomic regions from SNP 44523 to 45123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,012 DEBUG Processing 68/843 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,023 DEBUG Processing 18/1007 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,084 DEBUG Processing 66/872 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,195 DEBUG Processing 150/212 atomic regions from SNP 44823 to 45423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,247 DEBUG Processing 69/843 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,294 DEBUG Processing 19/1007 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,319 DEBUG Processing 67/872 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,431 DEBUG Processing 151/212 atomic regions from SNP 45123 to 45723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,484 DEBUG Processing 70/843 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,558 DEBUG Processing 68/872 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,578 DEBUG Processing 20/1007 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,664 DEBUG Processing 152/212 atomic regions from SNP 45423 to 46023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,714 DEBUG Processing 71/843 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,795 DEBUG Processing 69/872 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,860 DEBUG Processing 21/1007 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,893 DEBUG Processing 153/212 atomic regions from SNP 45723 to 46323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,939 DEBUG Processing 72/843 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,031 DEBUG Processing 70/872 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,122 DEBUG Processing 154/212 atomic regions from SNP 46023 to 46623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,124 DEBUG Processing 22/1007 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,167 DEBUG Processing 73/843 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,244 DEBUG Segmenting atomic regions: 2025-01-31 09:42:46,273 DEBUG Processing 71/872 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,357 DEBUG Processing 155/212 atomic regions from SNP 46323 to 46923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,392 DEBUG Processing 23/1007 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,400 DEBUG Processing 74/843 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,407 DEBUG Processing 1/1117 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,516 DEBUG Processing 72/872 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,601 DEBUG Processing 156/212 atomic regions from SNP 46623 to 47223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,633 DEBUG Processing 75/843 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,657 DEBUG Processing 24/1007 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,758 DEBUG Processing 73/872 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,841 DEBUG Processing 157/212 atomic regions from SNP 46923 to 47523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,865 DEBUG Processing 76/843 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,918 DEBUG Processing 25/1007 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,000 DEBUG Processing 74/872 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,079 DEBUG Processing 158/212 atomic regions from SNP 47223 to 47823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,103 DEBUG Processing 77/843 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,180 DEBUG Processing 26/1007 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,181 DEBUG Processing 2/1117 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,239 DEBUG Processing 75/872 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,316 DEBUG Processing 159/212 atomic regions from SNP 47523 to 48123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,338 DEBUG Processing 78/843 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,448 DEBUG Processing 27/1007 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,462 DEBUG Processing 3/1117 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,475 DEBUG Processing 76/872 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,560 DEBUG Processing 160/212 atomic regions from SNP 47823 to 48423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,573 DEBUG Processing 79/843 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,715 DEBUG Processing 77/872 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,715 DEBUG Processing 28/1007 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,746 DEBUG Processing 4/1117 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,800 DEBUG Processing 161/212 atomic regions from SNP 48123 to 48723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,805 DEBUG Processing 80/843 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,959 DEBUG Processing 78/872 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,986 DEBUG Processing 29/1007 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,028 DEBUG Processing 5/1117 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,041 DEBUG Processing 162/212 atomic regions from SNP 48423 to 49023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,045 DEBUG Processing 81/843 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,207 DEBUG Processing 79/872 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,267 DEBUG Processing 30/1007 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,295 DEBUG Processing 82/843 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,304 DEBUG Processing 163/212 atomic regions from SNP 48723 to 49323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,334 DEBUG Processing 6/1117 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,452 DEBUG Processing 80/872 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,542 DEBUG Processing 31/1007 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,555 DEBUG Processing 83/843 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,575 DEBUG Processing 164/212 atomic regions from SNP 49023 to 49623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,674 DEBUG Processing 7/1117 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,721 DEBUG Processing 81/872 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,882 DEBUG Processing 84/843 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,888 DEBUG Processing 32/1007 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,934 DEBUG Processing 165/212 atomic regions from SNP 49323 to 49923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,118 DEBUG Processing 82/872 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,125 DEBUG Processing 8/1117 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,191 DEBUG Processing 85/843 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,215 DEBUG Processing 33/1007 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,229 DEBUG Processing 166/212 atomic regions from SNP 49623 to 50223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,474 DEBUG Processing 83/872 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,526 DEBUG Processing 9/1117 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,577 DEBUG Processing 86/843 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,607 DEBUG Processing 167/212 atomic regions from SNP 49923 to 50523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,622 DEBUG Processing 34/1007 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,658 DEBUG Segmenting atomic regions: 2025-01-31 09:42:49,716 DEBUG Processing 84/872 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,779 DEBUG Processing 1/465 atomic regions from SNP 0 to 601 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:49,818 DEBUG Processing 10/1117 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,856 DEBUG Processing 87/843 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,933 DEBUG Processing 168/212 atomic regions from SNP 50223 to 50823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,981 DEBUG Processing 35/1007 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,023 DEBUG Processing 85/872 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,078 DEBUG Processing 2/465 atomic regions from SNP 301 to 902 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:50,127 DEBUG Processing 88/843 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,148 DEBUG Processing 11/1117 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,202 DEBUG Processing 169/212 atomic regions from SNP 50523 to 51123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,280 DEBUG Processing 36/1007 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,294 DEBUG Processing 86/872 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,316 DEBUG Processing 3/465 atomic regions from SNP 602 to 1203 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:50,366 DEBUG Processing 89/843 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,439 DEBUG Processing 12/1117 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,451 DEBUG Processing 170/212 atomic regions from SNP 50823 to 51423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,554 DEBUG Processing 87/872 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,557 DEBUG Processing 4/465 atomic regions from SNP 903 to 1504 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:50,557 DEBUG Processing 37/1007 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,631 DEBUG Processing 90/843 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,766 DEBUG Processing 171/212 atomic regions from SNP 51123 to 51723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,771 DEBUG Processing 13/1117 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,888 DEBUG Processing 5/465 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:50,891 DEBUG Processing 88/872 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,924 DEBUG Processing 38/1007 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,933 DEBUG Processing 91/843 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,047 DEBUG Processing 172/212 atomic regions from SNP 51423 to 52023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,086 DEBUG Processing 14/1117 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,137 DEBUG Processing 6/465 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:51,163 DEBUG Processing 89/872 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,182 DEBUG Processing 92/843 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,206 DEBUG Processing 39/1007 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,291 DEBUG Processing 173/212 atomic regions from SNP 51723 to 52323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,374 DEBUG Processing 15/1117 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,375 DEBUG Processing 7/465 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:51,412 DEBUG Processing 90/872 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,424 DEBUG Processing 93/843 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,481 DEBUG Processing 40/1007 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,531 DEBUG Processing 174/212 atomic regions from SNP 52023 to 52623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,610 DEBUG Processing 8/465 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:51,659 DEBUG Processing 16/1117 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,663 DEBUG Processing 91/872 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,669 DEBUG Processing 94/843 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,753 DEBUG Processing 41/1007 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,773 DEBUG Processing 175/212 atomic regions from SNP 52323 to 52923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,859 DEBUG Processing 9/465 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:51,923 DEBUG Processing 92/872 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,948 DEBUG Processing 95/843 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,960 DEBUG Processing 17/1117 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,063 DEBUG Processing 42/1007 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,074 DEBUG Processing 176/212 atomic regions from SNP 52623 to 53223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,165 DEBUG Processing 10/465 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:52,198 DEBUG Processing 93/872 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,257 DEBUG Processing 96/843 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,312 DEBUG Processing 18/1117 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,355 DEBUG Processing 177/212 atomic regions from SNP 52923 to 53523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,361 DEBUG Processing 43/1007 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,434 DEBUG Processing 11/465 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:52,471 DEBUG Processing 94/872 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,556 DEBUG Processing 97/843 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,636 DEBUG Processing 19/1117 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,656 DEBUG Processing 178/212 atomic regions from SNP 53223 to 53823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,679 DEBUG Processing 44/1007 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,705 DEBUG Processing 12/465 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:52,751 DEBUG Processing 95/872 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,883 DEBUG Processing 98/843 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,013 DEBUG Processing 179/212 atomic regions from SNP 53523 to 54123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,038 DEBUG Processing 13/465 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:53,042 DEBUG Processing 20/1117 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,051 DEBUG Processing 45/1007 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,061 DEBUG Processing 96/872 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,124 DEBUG Processing 99/843 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,432 DEBUG Processing 180/212 atomic regions from SNP 53823 to 54423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,476 DEBUG Processing 14/465 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:53,489 DEBUG Processing 97/872 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,497 DEBUG Processing 46/1007 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,512 DEBUG Processing 100/843 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,529 DEBUG Processing 21/1117 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,852 DEBUG Processing 181/212 atomic regions from SNP 54123 to 54723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,909 DEBUG Processing 15/465 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:53,919 DEBUG Processing 98/872 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,947 DEBUG Processing 101/843 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,958 DEBUG Processing 47/1007 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,000 DEBUG Processing 22/1117 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,264 DEBUG Processing 182/212 atomic regions from SNP 54423 to 55023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,342 DEBUG Processing 16/465 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:54,347 DEBUG Processing 99/872 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,363 DEBUG Processing 102/843 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,413 DEBUG Processing 48/1007 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,438 DEBUG Processing 23/1117 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,656 DEBUG Processing 183/212 atomic regions from SNP 54723 to 55323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,776 DEBUG Processing 100/872 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,784 DEBUG Processing 103/843 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,785 DEBUG Processing 17/465 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:54,851 DEBUG Processing 49/1007 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,886 DEBUG Processing 24/1117 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,023 DEBUG Processing 184/212 atomic regions from SNP 55023 to 55623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,167 DEBUG Processing 101/872 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,190 DEBUG Processing 104/843 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,204 DEBUG Processing 18/465 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:55,252 DEBUG Processing 50/1007 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,288 DEBUG Processing 25/1117 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,305 DEBUG Processing 185/212 atomic regions from SNP 55323 to 55923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,534 DEBUG Processing 102/872 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,618 DEBUG Processing 19/465 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:55,621 DEBUG Processing 105/843 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,717 DEBUG Processing 186/212 atomic regions from SNP 55623 to 56223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,719 DEBUG Processing 51/1007 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,746 DEBUG Processing 26/1117 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,863 DEBUG Processing 103/872 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,010 DEBUG Processing 106/843 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,015 DEBUG Processing 20/465 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:56,152 DEBUG Processing 187/212 atomic regions from SNP 55923 to 56523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,161 DEBUG Processing 52/1007 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,206 DEBUG Processing 27/1117 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,219 DEBUG Processing 104/872 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,388 DEBUG Processing 21/465 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:56,413 DEBUG Processing 107/843 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,578 DEBUG Processing 188/212 atomic regions from SNP 56223 to 56823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,598 DEBUG Processing 105/872 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,607 DEBUG Processing 53/1007 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,632 DEBUG Processing 28/1117 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,735 DEBUG Processing 22/465 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:56,780 DEBUG Processing 108/843 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,973 DEBUG Processing 189/212 atomic regions from SNP 56523 to 57123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,983 DEBUG Processing 106/872 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,025 DEBUG Processing 54/1007 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,043 DEBUG Processing 29/1117 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,071 DEBUG Processing 23/465 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:57,102 DEBUG Processing 109/843 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,355 DEBUG Processing 107/872 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,356 DEBUG Processing 190/212 atomic regions from SNP 56823 to 57423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,442 DEBUG Processing 55/1007 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,458 DEBUG Processing 24/465 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:57,469 DEBUG Processing 30/1117 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,480 DEBUG Processing 110/843 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,725 DEBUG Processing 108/872 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,742 DEBUG Processing 191/212 atomic regions from SNP 57123 to 57723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,857 DEBUG Processing 25/465 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:57,873 DEBUG Processing 56/1007 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,896 DEBUG Processing 111/843 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,901 DEBUG Processing 31/1117 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,108 DEBUG Processing 109/872 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,125 DEBUG Processing 192/212 atomic regions from SNP 57423 to 58023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,239 DEBUG Processing 26/465 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:58,294 DEBUG Processing 57/1007 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,297 DEBUG Processing 112/843 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,352 DEBUG Processing 32/1117 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,465 DEBUG Processing 110/872 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,499 DEBUG Processing 193/212 atomic regions from SNP 57723 to 58323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,622 DEBUG Processing 27/465 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:58,698 DEBUG Processing 113/843 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,705 DEBUG Processing 58/1007 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,743 DEBUG Processing 33/1117 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,772 DEBUG Processing 111/872 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,814 DEBUG Processing 194/212 atomic regions from SNP 58023 to 58623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,980 DEBUG Processing 28/465 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:59,090 DEBUG Processing 114/843 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,099 DEBUG Processing 112/872 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,108 DEBUG Processing 59/1007 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,122 DEBUG Processing 195/212 atomic regions from SNP 58323 to 58923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,139 DEBUG Processing 34/1117 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,219 DEBUG Processing 29/465 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:59,455 DEBUG Processing 113/872 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,457 DEBUG Processing 115/843 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,492 DEBUG Processing 196/212 atomic regions from SNP 58623 to 59223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,505 DEBUG Processing 60/1007 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,517 DEBUG Processing 30/465 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:59,539 DEBUG Processing 35/1117 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,773 DEBUG Processing 114/872 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,775 DEBUG Processing 116/843 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,883 DEBUG Processing 197/212 atomic regions from SNP 58923 to 59523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,898 DEBUG Processing 31/465 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 3 of 5). 2025-01-31 09:42:59,925 DEBUG Processing 61/1007 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,960 DEBUG Processing 36/1117 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,014 DEBUG Processing 115/872 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,025 DEBUG Processing 117/843 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,231 DEBUG Processing 198/212 atomic regions from SNP 59223 to 59823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,271 DEBUG Processing 32/465 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:00,333 DEBUG Processing 62/1007 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,353 DEBUG Processing 116/872 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,362 DEBUG Processing 118/843 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,390 DEBUG Processing 37/1117 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,541 DEBUG Processing 199/212 atomic regions from SNP 59523 to 60123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,642 DEBUG Processing 33/465 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:00,750 DEBUG Processing 117/872 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,761 DEBUG Processing 63/1007 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,761 DEBUG Processing 119/843 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,829 DEBUG Processing 38/1117 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,855 DEBUG Processing 200/212 atomic regions from SNP 59823 to 60423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,005 DEBUG Processing 34/465 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:01,160 DEBUG Processing 118/872 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,172 DEBUG Processing 120/843 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,199 DEBUG Processing 64/1007 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,237 DEBUG Processing 201/212 atomic regions from SNP 60123 to 60723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,256 DEBUG Processing 39/1117 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,367 DEBUG Processing 35/465 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:01,557 DEBUG Processing 119/872 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,572 DEBUG Processing 121/843 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,625 DEBUG Processing 65/1007 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,645 DEBUG Processing 202/212 atomic regions from SNP 60423 to 61023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,695 DEBUG Processing 40/1117 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,747 DEBUG Processing 36/465 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:01,931 DEBUG Processing 120/872 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,958 DEBUG Processing 122/843 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,055 DEBUG Processing 203/212 atomic regions from SNP 60723 to 61323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,064 DEBUG Processing 66/1007 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,139 DEBUG Processing 41/1117 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,142 DEBUG Processing 37/465 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:02,309 DEBUG Processing 121/872 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,353 DEBUG Processing 123/843 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,483 DEBUG Processing 204/212 atomic regions from SNP 61023 to 61623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,495 DEBUG Processing 67/1007 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,554 DEBUG Processing 38/465 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:02,597 DEBUG Processing 42/1117 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,684 DEBUG Processing 122/872 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,742 DEBUG Processing 124/843 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,921 DEBUG Processing 205/212 atomic regions from SNP 61323 to 61923 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,922 DEBUG Processing 68/1007 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,978 DEBUG Processing 39/465 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:03,050 DEBUG Processing 43/1117 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,072 DEBUG Processing 123/872 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,129 DEBUG Processing 125/843 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,341 DEBUG Processing 206/212 atomic regions from SNP 61623 to 62223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,359 DEBUG Processing 69/1007 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,410 DEBUG Processing 40/465 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:03,489 DEBUG Processing 124/872 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,501 DEBUG Processing 44/1117 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,533 DEBUG Processing 126/843 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,754 DEBUG Processing 207/212 atomic regions from SNP 61923 to 62523 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,772 DEBUG Processing 70/1007 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,821 DEBUG Processing 41/465 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:03,879 DEBUG Processing 125/872 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,911 DEBUG Processing 127/843 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,953 DEBUG Processing 45/1117 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,182 DEBUG Processing 208/212 atomic regions from SNP 62223 to 62823 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,212 DEBUG Processing 71/1007 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,236 DEBUG Processing 42/465 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:04,286 DEBUG Processing 126/872 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,308 DEBUG Processing 128/843 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,396 DEBUG Processing 46/1117 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,611 DEBUG Processing 209/212 atomic regions from SNP 62523 to 63123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,639 DEBUG Processing 72/1007 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,642 DEBUG Processing 43/465 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:04,680 DEBUG Processing 127/872 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,693 DEBUG Processing 129/843 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,838 DEBUG Processing 47/1117 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,027 DEBUG Processing 210/212 atomic regions from SNP 62823 to 63423 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,055 DEBUG Processing 44/465 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:05,076 DEBUG Processing 128/872 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,080 DEBUG Processing 73/1007 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,087 DEBUG Processing 130/843 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,266 DEBUG Processing 48/1117 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,409 DEBUG Processing 211/212 atomic regions from SNP 63123 to 63723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,448 DEBUG Processing 45/465 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:05,470 DEBUG Processing 129/872 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,499 DEBUG Processing 131/843 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,521 DEBUG Processing 74/1007 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,682 DEBUG Processing 49/1117 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,754 DEBUG Processing 46/465 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:05,779 DEBUG Processing 212/212 atomic regions from SNP 63423 to 64023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,810 DEBUG Processing 130/872 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,851 DEBUG Processing 132/843 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,892 DEBUG Processing 75/1007 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,042 DEBUG Unique SNPs positions in subchromosome 1: 64024 2025-01-31 09:43:06,083 DEBUG Processing 47/465 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:06,105 DEBUG Processing 50/1117 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,155 DEBUG Processing 131/872 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,181 DEBUG Processing 133/843 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,251 DEBUG Processing 76/1007 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,255 DEBUG Subchromosome time: 66.73730116710067, subchromosome SNPs: 64024 2025-01-31 09:43:06,305 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:06,461 DEBUG Processing 48/465 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:06,519 DEBUG Processing 132/872 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,534 DEBUG Processing 134/843 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,540 DEBUG Processing 51/1117 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,626 DEBUG Processing 77/1007 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,850 DEBUG Processing 49/465 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:06,920 DEBUG Processing 133/872 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,925 DEBUG Processing 135/843 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,983 DEBUG Processing 52/1117 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,020 DEBUG Processing 78/1007 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,226 DEBUG Processing 50/465 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:07,301 DEBUG Processing 134/872 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,309 DEBUG Processing 136/843 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,417 DEBUG Processing 53/1117 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,424 DEBUG Processing 79/1007 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,615 DEBUG Processing 51/465 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:07,676 DEBUG Processing 137/843 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,682 DEBUG Processing 135/872 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,821 DEBUG Processing 80/1007 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,833 DEBUG Processing 54/1117 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,987 DEBUG Processing 52/465 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:08,024 DEBUG Processing 138/843 atomic regions from SNP 41237 to 41837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,047 DEBUG Processing 136/872 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,229 DEBUG Processing 81/1007 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,274 DEBUG Processing 55/1117 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,385 DEBUG Processing 53/465 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:08,406 DEBUG Processing 139/843 atomic regions from SNP 41537 to 42137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,428 DEBUG Processing 137/872 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,656 DEBUG Processing 82/1007 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,714 DEBUG Processing 56/1117 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,764 DEBUG Processing 54/465 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:08,802 DEBUG Processing 140/843 atomic regions from SNP 41837 to 42437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,828 DEBUG Processing 138/872 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,086 DEBUG Processing 83/1007 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,164 DEBUG Processing 55/465 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:09,167 DEBUG Processing 57/1117 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,180 DEBUG Processing 141/843 atomic regions from SNP 42137 to 42737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,236 DEBUG Processing 139/872 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,491 DEBUG Processing 84/1007 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,547 DEBUG Processing 56/465 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:09,547 DEBUG Processing 142/843 atomic regions from SNP 42437 to 43037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,598 DEBUG Processing 58/1117 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,599 DEBUG Processing 140/872 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,825 DEBUG Processing 85/1007 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,913 DEBUG Processing 57/465 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:09,918 DEBUG Processing 143/843 atomic regions from SNP 42737 to 43337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,970 DEBUG Processing 141/872 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,003 DEBUG Processing 59/1117 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,150 DEBUG Processing 86/1007 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,295 DEBUG Processing 144/843 atomic regions from SNP 43037 to 43637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,303 DEBUG Processing 58/465 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:10,362 DEBUG Processing 142/872 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,436 DEBUG Processing 60/1117 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,541 DEBUG Processing 87/1007 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,645 DEBUG Processing 145/843 atomic regions from SNP 43337 to 43937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,662 DEBUG Processing 59/465 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:10,738 DEBUG Processing 143/872 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,862 DEBUG Processing 61/1117 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,894 DEBUG Processing 88/1007 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,919 DEBUG Processing 60/465 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:10,929 DEBUG Processing 146/843 atomic regions from SNP 43637 to 44237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,998 DEBUG Processing 144/872 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,161 DEBUG Processing 61/465 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:11,164 DEBUG Processing 62/1117 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,171 DEBUG Processing 89/1007 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,190 DEBUG Processing 147/843 atomic regions from SNP 43937 to 44537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,254 DEBUG Processing 145/872 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,432 DEBUG Processing 62/465 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:11,467 DEBUG Processing 90/1007 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,476 DEBUG Processing 148/843 atomic regions from SNP 44237 to 44837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,485 DEBUG Processing 63/1117 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,518 DEBUG Processing 146/872 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,673 DEBUG Processing 63/465 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:11,762 DEBUG Processing 149/843 atomic regions from SNP 44537 to 45137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,782 DEBUG Processing 64/1117 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,789 DEBUG Processing 91/1007 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,806 DEBUG Processing 147/872 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,904 DEBUG Processing 64/465 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:12,054 DEBUG Processing 150/843 atomic regions from SNP 44837 to 45437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,079 DEBUG Processing 65/1117 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,081 DEBUG Processing 148/872 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,106 DEBUG Processing 92/1007 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,157 DEBUG Processing 65/465 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:12,331 DEBUG Processing 151/843 atomic regions from SNP 45137 to 45737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,392 DEBUG Processing 149/872 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,394 DEBUG Processing 66/1117 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,432 DEBUG Processing 93/1007 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,435 DEBUG Processing 66/465 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:12,570 DEBUG Processing 152/843 atomic regions from SNP 45437 to 46037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,719 DEBUG Processing 150/872 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,732 DEBUG Processing 67/465 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:12,745 DEBUG Processing 67/1117 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,763 DEBUG Processing 94/1007 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,860 DEBUG Processing 153/843 atomic regions from SNP 45737 to 46337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,038 DEBUG Processing 68/465 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:13,051 DEBUG Processing 151/872 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,092 DEBUG Processing 68/1117 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,095 DEBUG Processing 95/1007 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,192 DEBUG Processing 154/843 atomic regions from SNP 46037 to 46637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,311 DEBUG Processing 69/465 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:13,370 DEBUG Processing 152/872 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,436 DEBUG Processing 96/1007 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,453 DEBUG Processing 69/1117 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,525 DEBUG Processing 155/843 atomic regions from SNP 46337 to 46937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,616 DEBUG Processing 70/465 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:13,663 DEBUG Processing 153/872 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,806 DEBUG Processing 97/1007 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,830 DEBUG Processing 70/1117 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,920 DEBUG Processing 156/843 atomic regions from SNP 46637 to 47237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,981 DEBUG Processing 71/465 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:13,993 DEBUG Processing 154/872 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,151 DEBUG Processing 98/1007 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,230 DEBUG Processing 71/1117 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,286 DEBUG Processing 157/843 atomic regions from SNP 46937 to 47537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,359 DEBUG Processing 72/465 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:14,362 DEBUG Processing 155/872 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,473 DEBUG Processing 99/1007 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,633 DEBUG Processing 72/1117 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,657 DEBUG Processing 158/843 atomic regions from SNP 47237 to 47837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,741 DEBUG Processing 156/872 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,752 DEBUG Processing 73/465 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:14,825 DEBUG Processing 100/1007 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,009 DEBUG Processing 73/1117 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,012 DEBUG Processing 159/843 atomic regions from SNP 47537 to 48137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,088 DEBUG Processing 74/465 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:15,089 DEBUG Processing 157/872 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,174 DEBUG Processing 101/1007 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,333 DEBUG Processing 160/843 atomic regions from SNP 47837 to 48437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,361 DEBUG Processing 74/1117 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,406 DEBUG Processing 158/872 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,419 DEBUG Processing 75/465 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:15,522 DEBUG Processing 102/1007 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,648 DEBUG Processing 161/843 atomic regions from SNP 48137 to 48737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,708 DEBUG Processing 75/1117 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,730 DEBUG Processing 159/872 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,749 DEBUG Processing 76/465 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:15,890 DEBUG Processing 103/1007 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,936 DEBUG Processing 162/843 atomic regions from SNP 48437 to 49037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,026 DEBUG Processing 160/872 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,036 DEBUG Processing 76/1117 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,071 DEBUG Processing 77/465 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:16,213 DEBUG Processing 104/1007 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,218 DEBUG Processing 163/843 atomic regions from SNP 48737 to 49337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,266 DEBUG Processing 161/872 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,315 DEBUG Processing 77/1117 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,316 DEBUG Processing 78/465 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:16,522 DEBUG Processing 164/843 atomic regions from SNP 49037 to 49637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,541 DEBUG Processing 162/872 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,542 DEBUG Processing 105/1007 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,572 DEBUG Processing 79/465 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:16,624 DEBUG Processing 78/1117 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,885 DEBUG Processing 165/843 atomic regions from SNP 49337 to 49937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,888 DEBUG Processing 163/872 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,910 DEBUG Processing 106/1007 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,910 DEBUG Processing 80/465 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:16,978 DEBUG Processing 79/1117 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,277 DEBUG Processing 164/872 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,280 DEBUG Processing 166/843 atomic regions from SNP 49637 to 50237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,302 DEBUG Processing 81/465 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:17,316 DEBUG Processing 107/1007 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,393 DEBUG Processing 80/1117 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,678 DEBUG Processing 165/872 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,684 DEBUG Processing 167/843 atomic regions from SNP 49937 to 50537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,736 DEBUG Processing 82/465 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:17,765 DEBUG Processing 108/1007 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,859 DEBUG Processing 81/1117 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,017 DEBUG Processing 168/843 atomic regions from SNP 50237 to 50837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,022 DEBUG Processing 166/872 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,153 DEBUG Processing 83/465 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:18,182 DEBUG Processing 109/1007 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,260 DEBUG Processing 82/1117 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,377 DEBUG Processing 169/843 atomic regions from SNP 50537 to 51137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,382 DEBUG Processing 167/872 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,572 DEBUG Processing 84/465 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:18,606 DEBUG Processing 110/1007 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,696 DEBUG Processing 83/1117 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,777 DEBUG Processing 168/872 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,788 DEBUG Processing 170/843 atomic regions from SNP 50837 to 51437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,970 DEBUG Processing 85/465 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:19,043 DEBUG Processing 111/1007 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,122 DEBUG Processing 84/1117 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,165 DEBUG Processing 169/872 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,217 DEBUG Processing 171/843 atomic regions from SNP 51137 to 51737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,359 DEBUG Processing 86/465 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:19,460 DEBUG Processing 112/1007 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,533 DEBUG Processing 85/1117 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,545 DEBUG Processing 170/872 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,598 DEBUG Processing 172/843 atomic regions from SNP 51437 to 52037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,679 DEBUG Processing 87/465 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:19,832 DEBUG Processing 113/1007 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,855 DEBUG Processing 171/872 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,892 DEBUG Processing 86/1117 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,944 DEBUG Processing 173/843 atomic regions from SNP 51737 to 52337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,016 DEBUG Processing 88/465 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:20,216 DEBUG Processing 172/872 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,231 DEBUG Processing 114/1007 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,303 DEBUG Processing 87/1117 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,317 DEBUG Processing 174/843 atomic regions from SNP 52037 to 52637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,376 DEBUG Processing 89/465 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:20,622 DEBUG Processing 173/872 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,645 DEBUG Processing 115/1007 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,716 DEBUG Processing 175/843 atomic regions from SNP 52337 to 52937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,746 DEBUG Processing 88/1117 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,782 DEBUG Processing 90/465 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:21,053 DEBUG Processing 174/872 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,122 DEBUG Processing 116/1007 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,148 DEBUG Processing 176/843 atomic regions from SNP 52637 to 53237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,220 DEBUG Processing 91/465 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:21,249 DEBUG Processing 89/1117 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,456 DEBUG Processing 175/872 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,535 DEBUG Processing 177/843 atomic regions from SNP 52937 to 53537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,544 DEBUG Processing 117/1007 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,631 DEBUG Processing 92/465 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:21,706 DEBUG Processing 90/1117 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,845 DEBUG Processing 176/872 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,922 DEBUG Processing 178/843 atomic regions from SNP 53237 to 53837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,958 DEBUG Processing 118/1007 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,018 DEBUG Processing 93/465 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:22,179 DEBUG Processing 91/1117 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,239 DEBUG Processing 177/872 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,355 DEBUG Processing 179/843 atomic regions from SNP 53537 to 54137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,417 DEBUG Processing 119/1007 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,419 DEBUG Processing 94/465 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:22,646 DEBUG Processing 92/1117 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,654 DEBUG Processing 178/872 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,749 DEBUG Processing 180/843 atomic regions from SNP 53837 to 54437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,846 DEBUG Processing 95/465 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:22,873 DEBUG Processing 120/1007 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,092 DEBUG Processing 179/872 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,148 DEBUG Processing 181/843 atomic regions from SNP 54137 to 54737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,149 DEBUG Processing 93/1117 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,283 DEBUG Processing 96/465 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:23,336 DEBUG Processing 121/1007 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,542 DEBUG Processing 180/872 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,612 DEBUG Processing 182/843 atomic regions from SNP 54437 to 55037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,667 DEBUG Processing 94/1117 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,738 DEBUG Processing 97/465 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:23,789 DEBUG Processing 122/1007 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,963 DEBUG Processing 181/872 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,106 DEBUG Processing 183/843 atomic regions from SNP 54737 to 55337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,180 DEBUG Processing 98/465 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:24,199 DEBUG Processing 95/1117 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,227 DEBUG Processing 123/1007 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,291 DEBUG Processing 182/872 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,558 DEBUG Processing 184/843 atomic regions from SNP 55037 to 55637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,590 DEBUG Processing 99/465 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:24,637 DEBUG Processing 183/872 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,654 DEBUG Processing 124/1007 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,658 DEBUG Processing 96/1117 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,947 DEBUG Processing 185/843 atomic regions from SNP 55337 to 55937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,026 DEBUG Processing 100/465 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:25,081 DEBUG Processing 184/872 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,123 DEBUG Processing 125/1007 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,152 DEBUG Processing 97/1117 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,273 DEBUG Processing 186/843 atomic regions from SNP 55637 to 56237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,426 DEBUG Processing 101/465 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:25,527 DEBUG Processing 185/872 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,640 DEBUG Processing 126/1007 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,658 DEBUG Processing 98/1117 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,669 DEBUG Processing 187/843 atomic regions from SNP 55937 to 56537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,828 DEBUG Processing 102/465 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:25,950 DEBUG Processing 186/872 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,113 DEBUG Processing 188/843 atomic regions from SNP 56237 to 56837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,146 DEBUG Processing 127/1007 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,154 DEBUG Processing 99/1117 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,244 DEBUG Processing 103/465 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:26,378 DEBUG Processing 187/872 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,526 DEBUG Processing 189/843 atomic regions from SNP 56537 to 57137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,604 DEBUG Processing 100/1117 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,614 DEBUG Processing 104/465 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:26,618 DEBUG Processing 128/1007 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,792 DEBUG Processing 188/872 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,990 DEBUG Processing 190/843 atomic regions from SNP 56837 to 57437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,054 DEBUG Processing 105/465 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:27,088 DEBUG Processing 101/1117 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,126 DEBUG Processing 129/1007 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,175 DEBUG Processing 189/872 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,420 DEBUG Processing 191/843 atomic regions from SNP 57137 to 57737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,478 DEBUG Processing 106/465 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:27,553 DEBUG Processing 102/1117 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,562 DEBUG Processing 190/872 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,622 DEBUG Processing 130/1007 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,851 DEBUG Processing 192/843 atomic regions from SNP 57437 to 58037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,923 DEBUG Processing 107/465 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:27,986 DEBUG Processing 191/872 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,025 DEBUG Processing 103/1117 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,062 DEBUG Processing 131/1007 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,226 DEBUG Processing 193/843 atomic regions from SNP 57737 to 58337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,332 DEBUG Processing 108/465 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:28,404 DEBUG Processing 192/872 atomic regions from SNP 57491 to 58091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,483 DEBUG Processing 132/1007 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,492 DEBUG Processing 104/1117 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,538 DEBUG Processing 194/843 atomic regions from SNP 58037 to 58637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,738 DEBUG Processing 109/465 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:28,825 DEBUG Processing 193/872 atomic regions from SNP 57791 to 58391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,967 DEBUG Processing 195/843 atomic regions from SNP 58337 to 58937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,982 DEBUG Processing 105/1117 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,985 DEBUG Processing 133/1007 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,011 DEBUG Processing 110/465 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:29,159 DEBUG Processing 194/872 atomic regions from SNP 58091 to 58691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,388 DEBUG Processing 196/843 atomic regions from SNP 58637 to 59237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,449 DEBUG Processing 111/465 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:29,468 DEBUG Processing 106/1117 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,481 DEBUG Processing 134/1007 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,508 DEBUG Processing 195/872 atomic regions from SNP 58391 to 58991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,739 DEBUG Processing 197/843 atomic regions from SNP 58937 to 59537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,746 DEBUG Segmenting atomic regions: 2025-01-31 09:43:29,872 DEBUG Processing 1/638 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,893 DEBUG Processing 112/465 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:29,942 DEBUG Processing 196/872 atomic regions from SNP 58691 to 59291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,954 DEBUG Processing 107/1117 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,971 DEBUG Processing 135/1007 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,080 DEBUG Processing 198/843 atomic regions from SNP 59237 to 59837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,307 DEBUG Processing 2/638 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,322 DEBUG Processing 113/465 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:30,398 DEBUG Processing 197/872 atomic regions from SNP 58991 to 59591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,437 DEBUG Processing 108/1117 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,445 DEBUG Processing 136/1007 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,470 DEBUG Processing 199/843 atomic regions from SNP 59537 to 60137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,758 DEBUG Processing 114/465 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:30,779 DEBUG Processing 3/638 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,858 DEBUG Processing 198/872 atomic regions from SNP 59291 to 59891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,928 DEBUG Processing 200/843 atomic regions from SNP 59837 to 60437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,957 DEBUG Processing 137/1007 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,963 DEBUG Processing 109/1117 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,176 DEBUG Processing 115/465 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:31,213 DEBUG Processing 4/638 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,334 DEBUG Processing 199/872 atomic regions from SNP 59591 to 60191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,412 DEBUG Processing 201/843 atomic regions from SNP 60137 to 60737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,467 DEBUG Processing 138/1007 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,475 DEBUG Processing 110/1117 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,590 DEBUG Processing 116/465 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:31,659 DEBUG Processing 5/638 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,743 DEBUG Processing 200/872 atomic regions from SNP 59891 to 60491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,874 DEBUG Processing 202/843 atomic regions from SNP 60437 to 61037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,959 DEBUG Processing 139/1007 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,969 DEBUG Processing 111/1117 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,015 DEBUG Processing 117/465 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:32,154 DEBUG Processing 6/638 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,181 DEBUG Processing 201/872 atomic regions from SNP 60191 to 60791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,335 DEBUG Processing 203/843 atomic regions from SNP 60737 to 61337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,429 DEBUG Processing 140/1007 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,445 DEBUG Processing 118/465 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:32,461 DEBUG Processing 112/1117 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,562 DEBUG Processing 202/872 atomic regions from SNP 60491 to 61091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,573 DEBUG Processing 7/638 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,741 DEBUG Processing 204/843 atomic regions from SNP 61037 to 61637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,857 DEBUG Processing 119/465 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:32,878 DEBUG Processing 141/1007 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,898 DEBUG Processing 113/1117 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,910 DEBUG Processing 203/872 atomic regions from SNP 60791 to 61391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,945 DEBUG Processing 8/638 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,088 DEBUG Processing 205/843 atomic regions from SNP 61337 to 61937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,258 DEBUG Processing 120/465 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:33,279 DEBUG Processing 204/872 atomic regions from SNP 61091 to 61691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,297 DEBUG Processing 9/638 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,303 DEBUG Processing 142/1007 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,315 DEBUG Processing 114/1117 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,357 DEBUG Processing 206/843 atomic regions from SNP 61637 to 62237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,610 DEBUG Processing 121/465 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:33,635 DEBUG Processing 205/872 atomic regions from SNP 61391 to 61991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,707 DEBUG Processing 10/638 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,734 DEBUG Processing 207/843 atomic regions from SNP 61937 to 62537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,748 DEBUG Processing 143/1007 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,749 DEBUG Processing 115/1117 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,923 DEBUG Processing 122/465 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:33,963 DEBUG Processing 206/872 atomic regions from SNP 61691 to 62291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,111 DEBUG Processing 11/638 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,164 DEBUG Processing 208/843 atomic regions from SNP 62237 to 62837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,210 DEBUG Processing 116/1117 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,227 DEBUG Processing 144/1007 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,300 DEBUG Processing 123/465 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:34,306 DEBUG Processing 207/872 atomic regions from SNP 61991 to 62591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,504 DEBUG Processing 12/638 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,566 DEBUG Processing 209/843 atomic regions from SNP 62537 to 63137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,701 DEBUG Processing 117/1117 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,733 DEBUG Processing 145/1007 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,744 DEBUG Processing 124/465 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:34,751 DEBUG Processing 208/872 atomic regions from SNP 62291 to 62891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,824 DEBUG Processing 13/638 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,891 DEBUG Processing 210/843 atomic regions from SNP 62837 to 63437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,158 DEBUG Processing 118/1117 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,173 DEBUG Processing 209/872 atomic regions from SNP 62591 to 63191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,177 DEBUG Processing 125/465 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:35,203 DEBUG Processing 146/1007 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,208 DEBUG Processing 14/638 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,214 DEBUG Processing 211/843 atomic regions from SNP 63137 to 63737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,573 DEBUG Processing 210/872 atomic regions from SNP 62891 to 63491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,586 DEBUG Processing 119/1117 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,594 DEBUG Processing 126/465 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:35,638 DEBUG Processing 212/843 atomic regions from SNP 63437 to 64037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,656 DEBUG Processing 15/638 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,663 DEBUG Processing 147/1007 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,928 DEBUG Processing 211/872 atomic regions from SNP 63191 to 63791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,005 DEBUG Processing 127/465 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:36,038 DEBUG Processing 120/1117 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,111 DEBUG Processing 213/843 atomic regions from SNP 63737 to 64337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,133 DEBUG Processing 16/638 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,146 DEBUG Processing 148/1007 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,187 DEBUG Processing 212/872 atomic regions from SNP 63491 to 64091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,340 DEBUG Processing 128/465 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:36,468 DEBUG Processing 121/1117 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,561 DEBUG Processing 214/843 atomic regions from SNP 64037 to 64637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,613 DEBUG Processing 213/872 atomic regions from SNP 63791 to 64391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,622 DEBUG Processing 17/638 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,654 DEBUG Processing 149/1007 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,680 DEBUG Processing 129/465 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:36,781 DEBUG Processing 122/1117 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,966 DEBUG Processing 215/843 atomic regions from SNP 64337 to 64937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,057 DEBUG Processing 214/872 atomic regions from SNP 64091 to 64691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,074 DEBUG Processing 18/638 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,116 DEBUG Processing 130/465 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:37,155 DEBUG Processing 150/1007 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,193 DEBUG Processing 123/1117 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,319 DEBUG Processing 216/843 atomic regions from SNP 64637 to 65237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,460 DEBUG Processing 215/872 atomic regions from SNP 64391 to 64991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,504 DEBUG Processing 19/638 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,534 DEBUG Processing 131/465 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:37,590 DEBUG Processing 151/1007 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,592 DEBUG Processing 217/843 atomic regions from SNP 64937 to 65537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,600 DEBUG Processing 124/1117 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,782 DEBUG Processing 216/872 atomic regions from SNP 64691 to 65291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,923 DEBUG Processing 20/638 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,983 DEBUG Processing 132/465 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:38,039 DEBUG Processing 218/843 atomic regions from SNP 65237 to 65837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,078 DEBUG Processing 152/1007 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,094 DEBUG Processing 125/1117 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,121 DEBUG Processing 217/872 atomic regions from SNP 64991 to 65591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,325 DEBUG Processing 21/638 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,418 DEBUG Processing 133/465 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:38,479 DEBUG Processing 219/843 atomic regions from SNP 65537 to 66137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,572 DEBUG Processing 153/1007 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,577 DEBUG Processing 218/872 atomic regions from SNP 65291 to 65891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,619 DEBUG Processing 126/1117 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,704 DEBUG Processing 22/638 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,810 DEBUG Processing 134/465 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:38,856 DEBUG Processing 220/843 atomic regions from SNP 65837 to 66437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,013 DEBUG Processing 219/872 atomic regions from SNP 65591 to 66191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,036 DEBUG Processing 154/1007 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,066 DEBUG Processing 127/1117 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,090 DEBUG Processing 23/638 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,132 DEBUG Processing 135/465 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:39,180 DEBUG Processing 221/843 atomic regions from SNP 66137 to 66737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,414 DEBUG Processing 220/872 atomic regions from SNP 65891 to 66491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,476 DEBUG Processing 155/1007 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,498 DEBUG Processing 136/465 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:39,505 DEBUG Processing 222/843 atomic regions from SNP 66437 to 67037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,513 DEBUG Processing 24/638 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,520 DEBUG Processing 128/1117 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,732 DEBUG Processing 221/872 atomic regions from SNP 66191 to 66791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,883 DEBUG Processing 137/465 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:39,892 DEBUG Processing 223/843 atomic regions from SNP 66737 to 67337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,901 DEBUG Processing 156/1007 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,911 DEBUG Processing 25/638 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,940 DEBUG Processing 129/1117 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,043 DEBUG Processing 222/872 atomic regions from SNP 66491 to 67091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,226 DEBUG Processing 138/465 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:40,227 DEBUG Processing 224/843 atomic regions from SNP 67037 to 67637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,309 DEBUG Processing 26/638 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,314 DEBUG Processing 157/1007 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,382 DEBUG Processing 130/1117 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,393 DEBUG Processing 223/872 atomic regions from SNP 66791 to 67391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,453 DEBUG Processing 225/843 atomic regions from SNP 67337 to 67937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,456 DEBUG Processing 139/465 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:40,564 DEBUG Processing 27/638 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,626 DEBUG Processing 158/1007 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,704 DEBUG Processing 224/872 atomic regions from SNP 67091 to 67691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,721 DEBUG Processing 226/843 atomic regions from SNP 67637 to 68237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,727 DEBUG Processing 140/465 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:40,731 DEBUG Processing 131/1117 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,808 DEBUG Processing 28/638 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,947 DEBUG Processing 159/1007 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,026 DEBUG Processing 225/872 atomic regions from SNP 67391 to 67991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,039 DEBUG Processing 227/843 atomic regions from SNP 67937 to 68537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,042 DEBUG Processing 141/465 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:41,091 DEBUG Processing 132/1117 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,102 DEBUG Processing 29/638 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,258 DEBUG Processing 160/1007 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,346 DEBUG Processing 226/872 atomic regions from SNP 67691 to 68291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,372 DEBUG Processing 228/843 atomic regions from SNP 68237 to 68837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,387 DEBUG Processing 142/465 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:41,447 DEBUG Processing 30/638 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,462 DEBUG Processing 133/1117 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,572 DEBUG Processing 161/1007 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,651 DEBUG Processing 227/872 atomic regions from SNP 67991 to 68591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,700 DEBUG Processing 229/843 atomic regions from SNP 68537 to 69137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,735 DEBUG Processing 143/465 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:41,809 DEBUG Processing 31/638 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,862 DEBUG Processing 134/1117 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,908 DEBUG Processing 162/1007 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,923 DEBUG Processing 228/872 atomic regions from SNP 68291 to 68891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,994 DEBUG Processing 230/843 atomic regions from SNP 68837 to 69437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,031 DEBUG Processing 144/465 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:42,176 DEBUG Processing 32/638 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,256 DEBUG Processing 229/872 atomic regions from SNP 68591 to 69191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,288 DEBUG Processing 135/1117 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,314 DEBUG Processing 231/843 atomic regions from SNP 69137 to 69737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,324 DEBUG Processing 145/465 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:42,329 DEBUG Processing 163/1007 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,594 DEBUG Processing 33/638 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,657 DEBUG Processing 230/872 atomic regions from SNP 68891 to 69491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,683 DEBUG Processing 232/843 atomic regions from SNP 69437 to 70037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,701 DEBUG Processing 146/465 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:42,723 DEBUG Processing 136/1117 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,770 DEBUG Processing 164/1007 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,980 DEBUG Processing 34/638 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,072 DEBUG Processing 233/843 atomic regions from SNP 69737 to 70337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,073 DEBUG Processing 231/872 atomic regions from SNP 69191 to 69791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,103 DEBUG Processing 147/465 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:43,156 DEBUG Processing 137/1117 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,172 DEBUG Processing 165/1007 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,225 DEBUG Processing 35/638 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,378 DEBUG Processing 234/843 atomic regions from SNP 70037 to 70637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,385 DEBUG Processing 232/872 atomic regions from SNP 69491 to 70091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,455 DEBUG Processing 148/465 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:43,565 DEBUG Processing 36/638 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,578 DEBUG Processing 166/1007 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,593 DEBUG Processing 138/1117 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,610 DEBUG Processing 235/843 atomic regions from SNP 70337 to 70937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,623 DEBUG Processing 233/872 atomic regions from SNP 69791 to 70391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,685 DEBUG Processing 149/465 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:43,912 DEBUG Processing 37/638 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,932 DEBUG Processing 236/843 atomic regions from SNP 70637 to 71237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,945 DEBUG Processing 234/872 atomic regions from SNP 70091 to 70691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,957 DEBUG Processing 167/1007 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,962 DEBUG Processing 139/1117 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,966 DEBUG Processing 150/465 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:44,308 DEBUG Processing 237/843 atomic regions from SNP 70937 to 71537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,316 DEBUG Processing 38/638 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,364 DEBUG Processing 235/872 atomic regions from SNP 70391 to 70991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,374 DEBUG Processing 151/465 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:44,407 DEBUG Processing 168/1007 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,412 DEBUG Processing 140/1117 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,581 DEBUG Processing 238/843 atomic regions from SNP 71237 to 71837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,608 DEBUG Processing 39/638 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,783 DEBUG Processing 236/872 atomic regions from SNP 70691 to 71291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,817 DEBUG Processing 152/465 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:44,875 DEBUG Processing 239/843 atomic regions from SNP 71537 to 72137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,895 DEBUG Processing 169/1007 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,899 DEBUG Processing 141/1117 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,900 DEBUG Processing 40/638 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,029 DEBUG Processing 237/872 atomic regions from SNP 70991 to 71591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,069 DEBUG Processing 153/465 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:45,172 DEBUG Processing 240/843 atomic regions from SNP 71837 to 72437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,201 DEBUG Processing 41/638 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,227 DEBUG Processing 170/1007 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,245 DEBUG Processing 142/1117 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,271 DEBUG Processing 238/872 atomic regions from SNP 71291 to 71891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,296 DEBUG Processing 154/465 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:45,435 DEBUG Processing 241/843 atomic regions from SNP 72137 to 72737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,478 DEBUG Processing 42/638 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,555 DEBUG Processing 239/872 atomic regions from SNP 71591 to 72191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,561 DEBUG Processing 155/465 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:45,571 DEBUG Processing 171/1007 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,592 DEBUG Processing 143/1117 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,668 DEBUG Processing 242/843 atomic regions from SNP 72437 to 73037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,711 DEBUG Processing 43/638 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,882 DEBUG Processing 156/465 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:45,894 DEBUG Processing 240/872 atomic regions from SNP 71891 to 72491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,949 DEBUG Processing 172/1007 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,952 DEBUG Processing 243/843 atomic regions from SNP 72737 to 73337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,957 DEBUG Processing 144/1117 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,968 DEBUG Processing 44/638 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,139 DEBUG Processing 157/465 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:46,190 DEBUG Processing 241/872 atomic regions from SNP 72191 to 72791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,305 DEBUG Processing 244/843 atomic regions from SNP 73037 to 73637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,309 DEBUG Processing 45/638 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,342 DEBUG Processing 173/1007 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,349 DEBUG Processing 145/1117 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,381 DEBUG Processing 158/465 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:46,425 DEBUG Processing 242/872 atomic regions from SNP 72491 to 73091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,654 DEBUG Processing 245/843 atomic regions from SNP 73337 to 73937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,663 DEBUG Processing 46/638 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,737 DEBUG Processing 159/465 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:46,760 DEBUG Processing 243/872 atomic regions from SNP 72791 to 73391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,771 DEBUG Processing 146/1117 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,771 DEBUG Processing 174/1007 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,993 DEBUG Processing 246/843 atomic regions from SNP 73637 to 74237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,012 DEBUG Processing 47/638 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,116 DEBUG Processing 160/465 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:47,154 DEBUG Processing 244/872 atomic regions from SNP 73091 to 73691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,200 DEBUG Processing 147/1117 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,214 DEBUG Processing 175/1007 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,309 DEBUG Processing 247/843 atomic regions from SNP 73937 to 74537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,350 DEBUG Processing 48/638 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,511 DEBUG Processing 161/465 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:47,547 DEBUG Processing 245/872 atomic regions from SNP 73391 to 73991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,639 DEBUG Processing 148/1117 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,656 DEBUG Processing 176/1007 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,667 DEBUG Processing 248/843 atomic regions from SNP 74237 to 74837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,701 DEBUG Processing 49/638 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,925 DEBUG Processing 162/465 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:47,956 DEBUG Processing 246/872 atomic regions from SNP 73691 to 74291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,091 DEBUG Processing 249/843 atomic regions from SNP 74537 to 75137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,101 DEBUG Processing 149/1117 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,124 DEBUG Processing 50/638 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,148 DEBUG Processing 177/1007 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,333 DEBUG Processing 163/465 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:48,360 DEBUG Processing 247/872 atomic regions from SNP 73991 to 74591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,499 DEBUG Processing 250/843 atomic regions from SNP 74837 to 75437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,539 DEBUG Processing 51/638 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,569 DEBUG Processing 150/1117 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,605 DEBUG Processing 178/1007 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,739 DEBUG Processing 164/465 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:48,764 DEBUG Processing 248/872 atomic regions from SNP 74291 to 74891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,897 DEBUG Processing 251/843 atomic regions from SNP 75137 to 75737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,972 DEBUG Processing 52/638 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,042 DEBUG Processing 151/1117 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,045 DEBUG Processing 179/1007 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,159 DEBUG Processing 165/465 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:49,183 DEBUG Processing 249/872 atomic regions from SNP 74591 to 75191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,290 DEBUG Processing 252/843 atomic regions from SNP 75437 to 76037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,393 DEBUG Processing 53/638 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,483 DEBUG Processing 180/1007 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,502 DEBUG Processing 152/1117 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,568 DEBUG Processing 166/465 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:49,599 DEBUG Processing 250/872 atomic regions from SNP 74891 to 75491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,685 DEBUG Processing 253/843 atomic regions from SNP 75737 to 76337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,813 DEBUG Processing 54/638 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,923 DEBUG Processing 181/1007 atomic regions from SNP 54180 to 54781 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,975 DEBUG Processing 153/1117 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,980 DEBUG Processing 167/465 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:50,019 DEBUG Processing 251/872 atomic regions from SNP 75191 to 75791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,090 DEBUG Processing 254/843 atomic regions from SNP 76037 to 76637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,222 DEBUG Processing 55/638 atomic regions from SNP 16254 to 16854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,381 DEBUG Processing 182/1007 atomic regions from SNP 54481 to 55082 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,421 DEBUG Processing 168/465 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:50,442 DEBUG Processing 252/872 atomic regions from SNP 75491 to 76091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,477 DEBUG Processing 154/1117 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,492 DEBUG Processing 255/843 atomic regions from SNP 76337 to 76937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,572 DEBUG Processing 56/638 atomic regions from SNP 16554 to 17154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,766 DEBUG Processing 183/1007 atomic regions from SNP 54782 to 55383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,826 DEBUG Processing 169/465 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:50,845 DEBUG Processing 253/872 atomic regions from SNP 75791 to 76391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,921 DEBUG Processing 256/843 atomic regions from SNP 76637 to 77237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,946 DEBUG Processing 155/1117 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,949 DEBUG Processing 57/638 atomic regions from SNP 16854 to 17454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,032 DEBUG Processing 184/1007 atomic regions from SNP 55083 to 55684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,057 DEBUG Processing 170/465 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:51,089 DEBUG Processing 254/872 atomic regions from SNP 76091 to 76691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,338 DEBUG Processing 257/843 atomic regions from SNP 76937 to 77537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,347 DEBUG Processing 58/638 atomic regions from SNP 17154 to 17754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,384 DEBUG Processing 156/1117 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,402 DEBUG Processing 171/465 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:51,418 DEBUG Processing 255/872 atomic regions from SNP 76391 to 76991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,420 DEBUG Processing 185/1007 atomic regions from SNP 55384 to 55985 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,748 DEBUG Processing 258/843 atomic regions from SNP 77237 to 77837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,772 DEBUG Processing 59/638 atomic regions from SNP 17454 to 18054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,812 DEBUG Processing 172/465 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:51,841 DEBUG Processing 157/1117 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,853 DEBUG Processing 256/872 atomic regions from SNP 76691 to 77291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,859 DEBUG Processing 186/1007 atomic regions from SNP 55685 to 56286 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,137 DEBUG Processing 259/843 atomic regions from SNP 77537 to 78137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,192 DEBUG Processing 60/638 atomic regions from SNP 17754 to 18354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,232 DEBUG Processing 173/465 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:52,295 DEBUG Processing 257/872 atomic regions from SNP 76991 to 77591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,303 DEBUG Processing 158/1117 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,313 DEBUG Processing 187/1007 atomic regions from SNP 55986 to 56587 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,519 DEBUG Processing 260/843 atomic regions from SNP 77837 to 78437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,598 DEBUG Processing 61/638 atomic regions from SNP 18054 to 18654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,653 DEBUG Processing 174/465 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:52,749 DEBUG Processing 258/872 atomic regions from SNP 77291 to 77891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,770 DEBUG Processing 159/1117 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,786 DEBUG Processing 188/1007 atomic regions from SNP 56287 to 56888 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,880 DEBUG Processing 261/843 atomic regions from SNP 78137 to 78737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,002 DEBUG Processing 62/638 atomic regions from SNP 18354 to 18954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,071 DEBUG Processing 175/465 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:53,195 DEBUG Processing 259/872 atomic regions from SNP 77591 to 78191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,245 DEBUG Processing 160/1117 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,258 DEBUG Processing 189/1007 atomic regions from SNP 56588 to 57189 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,268 DEBUG Processing 262/843 atomic regions from SNP 78437 to 79037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,428 DEBUG Processing 63/638 atomic regions from SNP 18654 to 19254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,494 DEBUG Processing 176/465 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:53,632 DEBUG Processing 260/872 atomic regions from SNP 77891 to 78491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,694 DEBUG Processing 263/843 atomic regions from SNP 78737 to 79337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,715 DEBUG Processing 190/1007 atomic regions from SNP 56889 to 57490 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,725 DEBUG Processing 161/1117 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,870 DEBUG Processing 64/638 atomic regions from SNP 18954 to 19554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,925 DEBUG Processing 177/465 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:54,062 DEBUG Processing 261/872 atomic regions from SNP 78191 to 78791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,116 DEBUG Processing 264/843 atomic regions from SNP 79037 to 79637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,185 DEBUG Processing 162/1117 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,209 DEBUG Processing 191/1007 atomic regions from SNP 57190 to 57791 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,333 DEBUG Processing 65/638 atomic regions from SNP 19254 to 19854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,365 DEBUG Processing 178/465 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:54,453 DEBUG Processing 262/872 atomic regions from SNP 78491 to 79091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,476 DEBUG Processing 265/843 atomic regions from SNP 79337 to 79937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,590 DEBUG Processing 163/1117 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,633 DEBUG Processing 192/1007 atomic regions from SNP 57491 to 58092 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,725 DEBUG Processing 66/638 atomic regions from SNP 19554 to 20154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,780 DEBUG Processing 179/465 atomic regions from SNP 53578 to 54178 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:54,811 DEBUG Processing 263/872 atomic regions from SNP 78791 to 79391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,812 DEBUG Processing 266/843 atomic regions from SNP 79637 to 80237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,898 DEBUG Processing 164/1117 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,943 DEBUG Processing 193/1007 atomic regions from SNP 57792 to 58393 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,980 DEBUG Processing 67/638 atomic regions from SNP 19854 to 20454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,113 DEBUG Processing 180/465 atomic regions from SNP 53878 to 54478 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:55,143 DEBUG Processing 267/843 atomic regions from SNP 79937 to 80537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,164 DEBUG Processing 264/872 atomic regions from SNP 79091 to 79691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,234 DEBUG Processing 68/638 atomic regions from SNP 20154 to 20754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,240 DEBUG Processing 165/1117 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,244 DEBUG Processing 194/1007 atomic regions from SNP 58093 to 58694 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,407 DEBUG Processing 181/465 atomic regions from SNP 54178 to 54778 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:55,478 DEBUG Processing 268/843 atomic regions from SNP 80237 to 80837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,529 DEBUG Processing 265/872 atomic regions from SNP 79391 to 79991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,591 DEBUG Processing 69/638 atomic regions from SNP 20454 to 21054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,632 DEBUG Processing 195/1007 atomic regions from SNP 58394 to 58995 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,647 DEBUG Processing 166/1117 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,657 DEBUG Processing 182/465 atomic regions from SNP 54478 to 55078 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:55,763 DEBUG Processing 269/843 atomic regions from SNP 80537 to 81137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,898 DEBUG Processing 266/872 atomic regions from SNP 79691 to 80291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,984 DEBUG Processing 70/638 atomic regions from SNP 20754 to 21354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,001 DEBUG Processing 183/465 atomic regions from SNP 54778 to 55378 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:56,023 DEBUG Processing 196/1007 atomic regions from SNP 58695 to 59296 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,040 DEBUG Processing 270/843 atomic regions from SNP 80837 to 81437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,044 DEBUG Processing 167/1117 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,231 DEBUG Processing 267/872 atomic regions from SNP 79991 to 80591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,394 DEBUG Processing 71/638 atomic regions from SNP 21054 to 21654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,401 DEBUG Processing 184/465 atomic regions from SNP 55078 to 55678 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:56,424 DEBUG Processing 271/843 atomic regions from SNP 81137 to 81737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,458 DEBUG Processing 197/1007 atomic regions from SNP 58996 to 59597 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,492 DEBUG Processing 168/1117 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,545 DEBUG Processing 268/872 atomic regions from SNP 80291 to 80891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,801 DEBUG Processing 72/638 atomic regions from SNP 21354 to 21954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,804 DEBUG Processing 185/465 atomic regions from SNP 55378 to 55978 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:56,827 DEBUG Processing 272/843 atomic regions from SNP 81437 to 82037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,918 DEBUG Processing 198/1007 atomic regions from SNP 59297 to 59898 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,941 DEBUG Processing 269/872 atomic regions from SNP 80591 to 81191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,968 DEBUG Processing 169/1117 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,046 DEBUG Processing 73/638 atomic regions from SNP 21654 to 22254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,057 DEBUG Processing 186/465 atomic regions from SNP 55678 to 56278 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:57,082 DEBUG Processing 273/843 atomic regions from SNP 81737 to 82337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,394 DEBUG Processing 270/872 atomic regions from SNP 80891 to 81491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,402 DEBUG Processing 199/1007 atomic regions from SNP 59598 to 60199 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,430 DEBUG Processing 74/638 atomic regions from SNP 21954 to 22554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,434 DEBUG Processing 274/843 atomic regions from SNP 82037 to 82637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,437 DEBUG Processing 187/465 atomic regions from SNP 55978 to 56578 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:57,463 DEBUG Processing 170/1117 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,854 DEBUG Processing 271/872 atomic regions from SNP 81191 to 81791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,887 DEBUG Processing 275/843 atomic regions from SNP 82337 to 82937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,893 DEBUG Processing 200/1007 atomic regions from SNP 59899 to 60500 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,904 DEBUG Processing 75/638 atomic regions from SNP 22254 to 22854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,912 DEBUG Processing 188/465 atomic regions from SNP 56278 to 56878 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:57,970 DEBUG Processing 171/1117 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,258 DEBUG Processing 272/872 atomic regions from SNP 81491 to 82091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,277 DEBUG Processing 276/843 atomic regions from SNP 82637 to 83237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,310 DEBUG Processing 76/638 atomic regions from SNP 22554 to 23154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,319 DEBUG Processing 189/465 atomic regions from SNP 56578 to 57178 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:58,323 DEBUG Processing 201/1007 atomic regions from SNP 60200 to 60801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,390 DEBUG Processing 172/1117 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,502 DEBUG Processing 273/872 atomic regions from SNP 81791 to 82391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,524 DEBUG Processing 277/843 atomic regions from SNP 82937 to 83537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,645 DEBUG Processing 77/638 atomic regions from SNP 22854 to 23454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,660 DEBUG Processing 190/465 atomic regions from SNP 56878 to 57478 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:58,713 DEBUG Processing 202/1007 atomic regions from SNP 60501 to 61102 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,788 DEBUG Processing 274/872 atomic regions from SNP 82091 to 82691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,789 DEBUG Processing 278/843 atomic regions from SNP 83237 to 83837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,789 DEBUG Processing 173/1117 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,891 DEBUG Processing 78/638 atomic regions from SNP 23154 to 23754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,939 DEBUG Processing 191/465 atomic regions from SNP 57178 to 57778 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:59,046 DEBUG Processing 203/1007 atomic regions from SNP 60802 to 61403 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,088 DEBUG Processing 279/843 atomic regions from SNP 83537 to 84137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,090 DEBUG Processing 275/872 atomic regions from SNP 82391 to 82991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,148 DEBUG Processing 79/638 atomic regions from SNP 23454 to 24054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,155 DEBUG Processing 174/1117 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,194 DEBUG Processing 192/465 atomic regions from SNP 57478 to 58078 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:59,355 DEBUG Processing 280/843 atomic regions from SNP 83837 to 84437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,369 DEBUG Processing 276/872 atomic regions from SNP 82691 to 83291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,373 DEBUG Processing 204/1007 atomic regions from SNP 61103 to 61704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,440 DEBUG Processing 80/638 atomic regions from SNP 23754 to 24354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,476 DEBUG Processing 193/465 atomic regions from SNP 57778 to 58378 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:59,517 DEBUG Processing 175/1117 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,626 DEBUG Processing 281/843 atomic regions from SNP 84137 to 84737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,630 DEBUG Processing 277/872 atomic regions from SNP 82991 to 83591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,659 DEBUG Processing 205/1007 atomic regions from SNP 61404 to 62005 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,754 DEBUG Processing 81/638 atomic regions from SNP 24054 to 24654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,782 DEBUG Processing 194/465 atomic regions from SNP 58078 to 58678 for chrX (subchromosome 3 of 5). 2025-01-31 09:43:59,881 DEBUG Processing 282/843 atomic regions from SNP 84437 to 85037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,887 DEBUG Processing 278/872 atomic regions from SNP 83291 to 83891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,898 DEBUG Processing 176/1117 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,932 DEBUG Processing 206/1007 atomic regions from SNP 61705 to 62306 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,002 DEBUG Processing 82/638 atomic regions from SNP 24354 to 24954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,035 DEBUG Processing 195/465 atomic regions from SNP 58378 to 58978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:00,167 DEBUG Processing 283/843 atomic regions from SNP 84737 to 85337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,175 DEBUG Processing 279/872 atomic regions from SNP 83591 to 84191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,231 DEBUG Processing 207/1007 atomic regions from SNP 62006 to 62607 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,260 DEBUG Processing 83/638 atomic regions from SNP 24654 to 25254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,263 DEBUG Processing 177/1117 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,273 DEBUG Processing 196/465 atomic regions from SNP 58678 to 59278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:00,426 DEBUG Processing 284/843 atomic regions from SNP 85037 to 85637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,441 DEBUG Processing 280/872 atomic regions from SNP 83891 to 84491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,508 DEBUG Processing 84/638 atomic regions from SNP 24954 to 25554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,510 DEBUG Processing 208/1007 atomic regions from SNP 62307 to 62908 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,511 DEBUG Processing 197/465 atomic regions from SNP 58978 to 59578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:00,552 DEBUG Processing 178/1117 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,680 DEBUG Processing 285/843 atomic regions from SNP 85337 to 85937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,698 DEBUG Processing 281/872 atomic regions from SNP 84191 to 84791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,749 DEBUG Processing 198/465 atomic regions from SNP 59278 to 59878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:00,752 DEBUG Processing 85/638 atomic regions from SNP 25254 to 25854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,776 DEBUG Processing 209/1007 atomic regions from SNP 62608 to 63209 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,834 DEBUG Processing 179/1117 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,930 DEBUG Processing 286/843 atomic regions from SNP 85637 to 86237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,953 DEBUG Processing 282/872 atomic regions from SNP 84491 to 85091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,998 DEBUG Processing 86/638 atomic regions from SNP 25554 to 26154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,004 DEBUG Processing 199/465 atomic regions from SNP 59578 to 60178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:01,052 DEBUG Processing 210/1007 atomic regions from SNP 62909 to 63510 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,125 DEBUG Processing 180/1117 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,178 DEBUG Processing 287/843 atomic regions from SNP 85937 to 86537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,208 DEBUG Processing 283/872 atomic regions from SNP 84791 to 85391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,242 DEBUG Processing 87/638 atomic regions from SNP 25854 to 26454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,258 DEBUG Processing 200/465 atomic regions from SNP 59878 to 60478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:01,336 DEBUG Processing 211/1007 atomic regions from SNP 63210 to 63811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,414 DEBUG Processing 181/1117 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,423 DEBUG Processing 288/843 atomic regions from SNP 86237 to 86837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,461 DEBUG Processing 284/872 atomic regions from SNP 85091 to 85691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,480 DEBUG Processing 88/638 atomic regions from SNP 26154 to 26754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,500 DEBUG Processing 201/465 atomic regions from SNP 60178 to 60778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:01,610 DEBUG Processing 212/1007 atomic regions from SNP 63511 to 64112 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,667 DEBUG Processing 289/843 atomic regions from SNP 86537 to 87137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,700 DEBUG Processing 182/1117 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,712 DEBUG Processing 285/872 atomic regions from SNP 85391 to 85991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,728 DEBUG Processing 89/638 atomic regions from SNP 26454 to 27054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,750 DEBUG Processing 202/465 atomic regions from SNP 60478 to 61078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:01,909 DEBUG Processing 213/1007 atomic regions from SNP 63812 to 64413 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,910 DEBUG Processing 290/843 atomic regions from SNP 86837 to 87437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,966 DEBUG Processing 286/872 atomic regions from SNP 85691 to 86291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,985 DEBUG Processing 183/1117 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,987 DEBUG Processing 90/638 atomic regions from SNP 26754 to 27354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,012 DEBUG Processing 203/465 atomic regions from SNP 60778 to 61378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:02,151 DEBUG Processing 291/843 atomic regions from SNP 87137 to 87737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,210 DEBUG Processing 214/1007 atomic regions from SNP 64113 to 64714 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,219 DEBUG Processing 287/872 atomic regions from SNP 85991 to 86591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,233 DEBUG Processing 91/638 atomic regions from SNP 27054 to 27654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,287 DEBUG Processing 204/465 atomic regions from SNP 61078 to 61678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:02,298 DEBUG Processing 184/1117 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,391 DEBUG Processing 292/843 atomic regions from SNP 87437 to 88037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,468 DEBUG Processing 288/872 atomic regions from SNP 86291 to 86891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,477 DEBUG Processing 92/638 atomic regions from SNP 27354 to 27954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,489 DEBUG Processing 215/1007 atomic regions from SNP 64414 to 65015 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,554 DEBUG Processing 205/465 atomic regions from SNP 61378 to 61978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:02,615 DEBUG Processing 185/1117 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,633 DEBUG Processing 293/843 atomic regions from SNP 87737 to 88337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,714 DEBUG Processing 289/872 atomic regions from SNP 86591 to 87191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,718 DEBUG Processing 93/638 atomic regions from SNP 27654 to 28254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,764 DEBUG Processing 216/1007 atomic regions from SNP 64715 to 65316 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,823 DEBUG Processing 206/465 atomic regions from SNP 61678 to 62278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:02,876 DEBUG Processing 294/843 atomic regions from SNP 88037 to 88637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,930 DEBUG Processing 186/1117 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,958 DEBUG Processing 290/872 atomic regions from SNP 86891 to 87491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,961 DEBUG Processing 94/638 atomic regions from SNP 27954 to 28554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,036 DEBUG Processing 217/1007 atomic regions from SNP 65016 to 65617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,089 DEBUG Processing 207/465 atomic regions from SNP 61978 to 62578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:03,124 DEBUG Processing 295/843 atomic regions from SNP 88337 to 88937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,203 DEBUG Processing 291/872 atomic regions from SNP 87191 to 87791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,205 DEBUG Processing 95/638 atomic regions from SNP 28254 to 28854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,250 DEBUG Processing 187/1117 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,306 DEBUG Processing 218/1007 atomic regions from SNP 65317 to 65918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,324 DEBUG Processing 208/465 atomic regions from SNP 62278 to 62878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:03,372 DEBUG Processing 296/843 atomic regions from SNP 88637 to 89237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,448 DEBUG Processing 292/872 atomic regions from SNP 87491 to 88091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,459 DEBUG Processing 96/638 atomic regions from SNP 28554 to 29154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,562 DEBUG Processing 209/465 atomic regions from SNP 62578 to 63178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:03,564 DEBUG Processing 188/1117 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,582 DEBUG Processing 219/1007 atomic regions from SNP 65618 to 66219 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,623 DEBUG Processing 297/843 atomic regions from SNP 88937 to 89537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,693 DEBUG Processing 293/872 atomic regions from SNP 87791 to 88391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,727 DEBUG Processing 97/638 atomic regions from SNP 28854 to 29454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,795 DEBUG Processing 210/465 atomic regions from SNP 62878 to 63478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:03,863 DEBUG Processing 220/1007 atomic regions from SNP 65919 to 66520 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,870 DEBUG Processing 189/1117 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,875 DEBUG Processing 298/843 atomic regions from SNP 89237 to 89837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,940 DEBUG Processing 294/872 atomic regions from SNP 88091 to 88691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,989 DEBUG Processing 98/638 atomic regions from SNP 29154 to 29754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,021 DEBUG Processing 211/465 atomic regions from SNP 63178 to 63778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:04,119 DEBUG Processing 299/843 atomic regions from SNP 89537 to 90137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,141 DEBUG Processing 221/1007 atomic regions from SNP 66220 to 66821 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,188 DEBUG Processing 190/1117 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,188 DEBUG Processing 295/872 atomic regions from SNP 88391 to 88991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,237 DEBUG Processing 99/638 atomic regions from SNP 29454 to 30054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,253 DEBUG Processing 212/465 atomic regions from SNP 63478 to 64078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:04,358 DEBUG Processing 300/843 atomic regions from SNP 89837 to 90437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,415 DEBUG Processing 222/1007 atomic regions from SNP 66521 to 67122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,439 DEBUG Processing 296/872 atomic regions from SNP 88691 to 89291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,479 DEBUG Processing 191/1117 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,497 DEBUG Processing 100/638 atomic regions from SNP 29754 to 30354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,506 DEBUG Processing 213/465 atomic regions from SNP 63778 to 64378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:04,597 DEBUG Processing 301/843 atomic regions from SNP 90137 to 90737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,689 DEBUG Processing 223/1007 atomic regions from SNP 66822 to 67423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,689 DEBUG Processing 297/872 atomic regions from SNP 88991 to 89591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,751 DEBUG Processing 214/465 atomic regions from SNP 64078 to 64678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:04,769 DEBUG Processing 101/638 atomic regions from SNP 30054 to 30654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,784 DEBUG Processing 192/1117 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,836 DEBUG Processing 302/843 atomic regions from SNP 90437 to 91037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,940 DEBUG Processing 298/872 atomic regions from SNP 89291 to 89891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,967 DEBUG Processing 224/1007 atomic regions from SNP 67123 to 67724 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,990 DEBUG Processing 215/465 atomic regions from SNP 64378 to 64978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,033 DEBUG Processing 102/638 atomic regions from SNP 30354 to 30954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,076 DEBUG Processing 303/843 atomic regions from SNP 90737 to 91337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,097 DEBUG Processing 193/1117 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,210 DEBUG Processing 299/872 atomic regions from SNP 89591 to 90191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,233 DEBUG Processing 216/465 atomic regions from SNP 64678 to 65278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,253 DEBUG Processing 225/1007 atomic regions from SNP 67424 to 68025 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,300 DEBUG Processing 103/638 atomic regions from SNP 30654 to 31254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,330 DEBUG Processing 304/843 atomic regions from SNP 91037 to 91637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,395 DEBUG Processing 194/1117 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,462 DEBUG Processing 300/872 atomic regions from SNP 89891 to 90491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,467 DEBUG Processing 217/465 atomic regions from SNP 64978 to 65578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,532 DEBUG Processing 226/1007 atomic regions from SNP 67725 to 68326 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,555 DEBUG Processing 104/638 atomic regions from SNP 30954 to 31554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,570 DEBUG Processing 305/843 atomic regions from SNP 91337 to 91937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,694 DEBUG Processing 195/1117 atomic regions from SNP 58394 to 58995 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,700 DEBUG Processing 218/465 atomic regions from SNP 65278 to 65878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,711 DEBUG Processing 301/872 atomic regions from SNP 90191 to 90791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,810 DEBUG Processing 227/1007 atomic regions from SNP 68026 to 68627 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,814 DEBUG Processing 105/638 atomic regions from SNP 31254 to 31854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,814 DEBUG Processing 306/843 atomic regions from SNP 91637 to 92237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,931 DEBUG Processing 219/465 atomic regions from SNP 65578 to 66178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:05,960 DEBUG Processing 302/872 atomic regions from SNP 90491 to 91091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,999 DEBUG Processing 196/1117 atomic regions from SNP 58695 to 59296 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,061 DEBUG Processing 307/843 atomic regions from SNP 91937 to 92537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,071 DEBUG Processing 106/638 atomic regions from SNP 31554 to 32154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,091 DEBUG Processing 228/1007 atomic regions from SNP 68327 to 68928 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,161 DEBUG Processing 220/465 atomic regions from SNP 65878 to 66478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,204 DEBUG Processing 303/872 atomic regions from SNP 90791 to 91391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,297 DEBUG Processing 197/1117 atomic regions from SNP 58996 to 59597 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,310 DEBUG Processing 308/843 atomic regions from SNP 92237 to 92837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,349 DEBUG Processing 107/638 atomic regions from SNP 31854 to 32454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,373 DEBUG Processing 229/1007 atomic regions from SNP 68628 to 69229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,388 DEBUG Processing 221/465 atomic regions from SNP 66178 to 66778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,445 DEBUG Processing 304/872 atomic regions from SNP 91091 to 91691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,560 DEBUG Processing 309/843 atomic regions from SNP 92537 to 93137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,596 DEBUG Processing 198/1117 atomic regions from SNP 59297 to 59898 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,620 DEBUG Processing 108/638 atomic regions from SNP 32154 to 32754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,640 DEBUG Processing 222/465 atomic regions from SNP 66478 to 67078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,651 DEBUG Processing 230/1007 atomic regions from SNP 68929 to 69530 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,687 DEBUG Processing 305/872 atomic regions from SNP 91391 to 91991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,808 DEBUG Processing 310/843 atomic regions from SNP 92837 to 93437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,869 DEBUG Processing 109/638 atomic regions from SNP 32454 to 33054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,880 DEBUG Processing 223/465 atomic regions from SNP 66778 to 67378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:06,890 DEBUG Processing 199/1117 atomic regions from SNP 59598 to 60199 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,923 DEBUG Processing 231/1007 atomic regions from SNP 69230 to 69831 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,934 DEBUG Processing 306/872 atomic regions from SNP 91691 to 92291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,058 DEBUG Processing 311/843 atomic regions from SNP 93137 to 93737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,115 DEBUG Processing 110/638 atomic regions from SNP 32754 to 33354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,116 DEBUG Processing 224/465 atomic regions from SNP 67078 to 67678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,174 DEBUG Processing 200/1117 atomic regions from SNP 59899 to 60500 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,181 DEBUG Processing 307/872 atomic regions from SNP 91991 to 92591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,196 DEBUG Processing 232/1007 atomic regions from SNP 69531 to 70132 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,310 DEBUG Processing 312/843 atomic regions from SNP 93437 to 94037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,353 DEBUG Processing 225/465 atomic regions from SNP 67378 to 67978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,360 DEBUG Processing 111/638 atomic regions from SNP 33054 to 33654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,422 DEBUG Processing 308/872 atomic regions from SNP 92291 to 92891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,467 DEBUG Processing 233/1007 atomic regions from SNP 69832 to 70433 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,471 DEBUG Processing 201/1117 atomic regions from SNP 60200 to 60801 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,561 DEBUG Processing 313/843 atomic regions from SNP 93737 to 94337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,589 DEBUG Processing 226/465 atomic regions from SNP 67678 to 68278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,606 DEBUG Processing 112/638 atomic regions from SNP 33354 to 33954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,658 DEBUG Processing 309/872 atomic regions from SNP 92591 to 93191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,739 DEBUG Processing 234/1007 atomic regions from SNP 70133 to 70734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,785 DEBUG Processing 202/1117 atomic regions from SNP 60501 to 61102 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,815 DEBUG Processing 314/843 atomic regions from SNP 94037 to 94637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,833 DEBUG Processing 227/465 atomic regions from SNP 67978 to 68578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:07,854 DEBUG Processing 113/638 atomic regions from SNP 33654 to 34254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,901 DEBUG Processing 310/872 atomic regions from SNP 92891 to 93491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,016 DEBUG Processing 235/1007 atomic regions from SNP 70434 to 71035 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,072 DEBUG Processing 315/843 atomic regions from SNP 94337 to 94937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,089 DEBUG Processing 228/465 atomic regions from SNP 68278 to 68878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,096 DEBUG Processing 203/1117 atomic regions from SNP 60802 to 61403 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,114 DEBUG Processing 114/638 atomic regions from SNP 33954 to 34554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,147 DEBUG Processing 311/872 atomic regions from SNP 93191 to 93791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,291 DEBUG Processing 236/1007 atomic regions from SNP 70735 to 71336 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,326 DEBUG Processing 316/843 atomic regions from SNP 94637 to 95237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,334 DEBUG Processing 229/465 atomic regions from SNP 68578 to 69178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,374 DEBUG Processing 115/638 atomic regions from SNP 34254 to 34854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,391 DEBUG Processing 204/1117 atomic regions from SNP 61103 to 61704 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,401 DEBUG Processing 312/872 atomic regions from SNP 93491 to 94091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,565 DEBUG Processing 237/1007 atomic regions from SNP 71036 to 71637 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,572 DEBUG Processing 317/843 atomic regions from SNP 94937 to 95537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,572 DEBUG Processing 230/465 atomic regions from SNP 68878 to 69478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,633 DEBUG Processing 116/638 atomic regions from SNP 34554 to 35154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,659 DEBUG Processing 313/872 atomic regions from SNP 93791 to 94391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,714 DEBUG Processing 205/1117 atomic regions from SNP 61404 to 62005 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,801 DEBUG Processing 231/465 atomic regions from SNP 69178 to 69778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:08,807 DEBUG Processing 318/843 atomic regions from SNP 95237 to 95837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,832 DEBUG Processing 238/1007 atomic regions from SNP 71337 to 71938 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,879 DEBUG Processing 117/638 atomic regions from SNP 34854 to 35454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,917 DEBUG Processing 314/872 atomic regions from SNP 94091 to 94691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,036 DEBUG Processing 232/465 atomic regions from SNP 69478 to 70078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,041 DEBUG Processing 206/1117 atomic regions from SNP 61705 to 62306 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,041 DEBUG Processing 319/843 atomic regions from SNP 95537 to 96137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,099 DEBUG Processing 239/1007 atomic regions from SNP 71638 to 72239 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,119 DEBUG Processing 118/638 atomic regions from SNP 35154 to 35754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,170 DEBUG Processing 315/872 atomic regions from SNP 94391 to 94991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,284 DEBUG Processing 233/465 atomic regions from SNP 69778 to 70378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,285 DEBUG Processing 320/843 atomic regions from SNP 95837 to 96437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,343 DEBUG Processing 207/1117 atomic regions from SNP 62006 to 62607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,362 DEBUG Processing 119/638 atomic regions from SNP 35454 to 36054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,375 DEBUG Processing 240/1007 atomic regions from SNP 71939 to 72540 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,419 DEBUG Processing 316/872 atomic regions from SNP 94691 to 95291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,531 DEBUG Processing 234/465 atomic regions from SNP 70078 to 70678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,532 DEBUG Processing 321/843 atomic regions from SNP 96137 to 96737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,603 DEBUG Processing 120/638 atomic regions from SNP 35754 to 36354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,628 DEBUG Processing 208/1117 atomic regions from SNP 62307 to 62908 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,646 DEBUG Processing 241/1007 atomic regions from SNP 72240 to 72841 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,661 DEBUG Processing 317/872 atomic regions from SNP 94991 to 95591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,777 DEBUG Processing 235/465 atomic regions from SNP 70378 to 70978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:09,782 DEBUG Processing 322/843 atomic regions from SNP 96437 to 97037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,850 DEBUG Processing 121/638 atomic regions from SNP 36054 to 36654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,906 DEBUG Processing 318/872 atomic regions from SNP 95291 to 95891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,914 DEBUG Processing 242/1007 atomic regions from SNP 72541 to 73142 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,917 DEBUG Processing 209/1117 atomic regions from SNP 62608 to 63209 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,016 DEBUG Processing 236/465 atomic regions from SNP 70678 to 71278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,029 DEBUG Processing 323/843 atomic regions from SNP 96737 to 97337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,094 DEBUG Processing 122/638 atomic regions from SNP 36354 to 36954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,149 DEBUG Processing 319/872 atomic regions from SNP 95591 to 96191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,183 DEBUG Processing 243/1007 atomic regions from SNP 72842 to 73443 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,205 DEBUG Processing 210/1117 atomic regions from SNP 62909 to 63510 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,256 DEBUG Processing 237/465 atomic regions from SNP 70978 to 71578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,272 DEBUG Processing 324/843 atomic regions from SNP 97037 to 97637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,335 DEBUG Processing 123/638 atomic regions from SNP 36654 to 37254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,397 DEBUG Processing 320/872 atomic regions from SNP 95891 to 96491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,464 DEBUG Processing 244/1007 atomic regions from SNP 73143 to 73744 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,502 DEBUG Processing 238/465 atomic regions from SNP 71278 to 71878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,502 DEBUG Processing 211/1117 atomic regions from SNP 63210 to 63811 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,517 DEBUG Processing 325/843 atomic regions from SNP 97337 to 97937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,579 DEBUG Processing 124/638 atomic regions from SNP 36954 to 37554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,643 DEBUG Processing 321/872 atomic regions from SNP 96191 to 96791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,751 DEBUG Processing 245/1007 atomic regions from SNP 73444 to 74045 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,756 DEBUG Processing 239/465 atomic regions from SNP 71578 to 72178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:10,770 DEBUG Processing 326/843 atomic regions from SNP 97637 to 98237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,805 DEBUG Processing 212/1117 atomic regions from SNP 63511 to 64112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,832 DEBUG Processing 125/638 atomic regions from SNP 37254 to 37854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,886 DEBUG Processing 322/872 atomic regions from SNP 96491 to 97091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,002 DEBUG Processing 240/465 atomic regions from SNP 71878 to 72478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,018 DEBUG Processing 327/843 atomic regions from SNP 97937 to 98537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,033 DEBUG Processing 246/1007 atomic regions from SNP 73745 to 74346 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,086 DEBUG Processing 126/638 atomic regions from SNP 37554 to 38154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,106 DEBUG Processing 213/1117 atomic regions from SNP 63812 to 64413 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,133 DEBUG Processing 323/872 atomic regions from SNP 96791 to 97391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,246 DEBUG Processing 241/465 atomic regions from SNP 72178 to 72778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,261 DEBUG Processing 328/843 atomic regions from SNP 98237 to 98837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,319 DEBUG Processing 247/1007 atomic regions from SNP 74046 to 74647 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,340 DEBUG Processing 127/638 atomic regions from SNP 37854 to 38454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,387 DEBUG Processing 324/872 atomic regions from SNP 97091 to 97691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,400 DEBUG Processing 214/1117 atomic regions from SNP 64113 to 64714 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,489 DEBUG Processing 242/465 atomic regions from SNP 72478 to 73078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,503 DEBUG Processing 329/843 atomic regions from SNP 98537 to 99137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,587 DEBUG Processing 128/638 atomic regions from SNP 38154 to 38754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,610 DEBUG Processing 248/1007 atomic regions from SNP 74347 to 74948 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,641 DEBUG Processing 325/872 atomic regions from SNP 97391 to 97991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,691 DEBUG Processing 215/1117 atomic regions from SNP 64414 to 65015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,730 DEBUG Processing 243/465 atomic regions from SNP 72778 to 73378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,745 DEBUG Processing 330/843 atomic regions from SNP 98837 to 99437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,831 DEBUG Processing 129/638 atomic regions from SNP 38454 to 39054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,884 DEBUG Processing 249/1007 atomic regions from SNP 74648 to 75249 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,896 DEBUG Processing 326/872 atomic regions from SNP 97691 to 98291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,971 DEBUG Processing 244/465 atomic regions from SNP 73078 to 73678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:11,981 DEBUG Processing 216/1117 atomic regions from SNP 64715 to 65316 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,990 DEBUG Processing 331/843 atomic regions from SNP 99137 to 99737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,074 DEBUG Processing 130/638 atomic regions from SNP 38754 to 39354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,148 DEBUG Processing 327/872 atomic regions from SNP 97991 to 98591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,161 DEBUG Processing 250/1007 atomic regions from SNP 74949 to 75550 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,211 DEBUG Processing 245/465 atomic regions from SNP 73378 to 73978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:12,242 DEBUG Processing 332/843 atomic regions from SNP 99437 to 100037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,277 DEBUG Processing 217/1117 atomic regions from SNP 65016 to 65617 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,316 DEBUG Processing 131/638 atomic regions from SNP 39054 to 39654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,398 DEBUG Processing 328/872 atomic regions from SNP 98291 to 98891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,444 DEBUG Processing 251/1007 atomic regions from SNP 75250 to 75851 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,456 DEBUG Processing 246/465 atomic regions from SNP 73678 to 74278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:12,498 DEBUG Processing 333/843 atomic regions from SNP 99737 to 100337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,563 DEBUG Processing 132/638 atomic regions from SNP 39354 to 39954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,563 DEBUG Processing 218/1117 atomic regions from SNP 65317 to 65918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,653 DEBUG Processing 329/872 atomic regions from SNP 98591 to 99191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,699 DEBUG Processing 247/465 atomic regions from SNP 73978 to 74578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:12,729 DEBUG Processing 252/1007 atomic regions from SNP 75551 to 76152 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,755 DEBUG Processing 334/843 atomic regions from SNP 100037 to 100637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,807 DEBUG Processing 133/638 atomic regions from SNP 39654 to 40254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,855 DEBUG Processing 219/1117 atomic regions from SNP 65618 to 66219 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,894 DEBUG Processing 330/872 atomic regions from SNP 98891 to 99491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,938 DEBUG Processing 248/465 atomic regions from SNP 74278 to 74878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,009 DEBUG Processing 335/843 atomic regions from SNP 100337 to 100937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,017 DEBUG Processing 253/1007 atomic regions from SNP 75852 to 76453 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,051 DEBUG Processing 134/638 atomic regions from SNP 39954 to 40554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,138 DEBUG Processing 331/872 atomic regions from SNP 99191 to 99791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,143 DEBUG Processing 220/1117 atomic regions from SNP 65919 to 66520 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,176 DEBUG Processing 249/465 atomic regions from SNP 74578 to 75178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,261 DEBUG Processing 336/843 atomic regions from SNP 100637 to 101237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,298 DEBUG Processing 135/638 atomic regions from SNP 40254 to 40854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,304 DEBUG Processing 254/1007 atomic regions from SNP 76153 to 76754 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,391 DEBUG Processing 332/872 atomic regions from SNP 99491 to 100091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,415 DEBUG Processing 250/465 atomic regions from SNP 74878 to 75478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,435 DEBUG Processing 221/1117 atomic regions from SNP 66220 to 66821 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,501 DEBUG Processing 337/843 atomic regions from SNP 100937 to 101537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,544 DEBUG Processing 136/638 atomic regions from SNP 40554 to 41154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,585 DEBUG Processing 255/1007 atomic regions from SNP 76454 to 77055 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,651 DEBUG Processing 333/872 atomic regions from SNP 99791 to 100391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,656 DEBUG Processing 251/465 atomic regions from SNP 75178 to 75778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,725 DEBUG Processing 222/1117 atomic regions from SNP 66521 to 67122 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,742 DEBUG Processing 338/843 atomic regions from SNP 101237 to 101837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,789 DEBUG Processing 137/638 atomic regions from SNP 40854 to 41454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,865 DEBUG Processing 256/1007 atomic regions from SNP 76755 to 77356 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,894 DEBUG Processing 252/465 atomic regions from SNP 75478 to 76078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:13,908 DEBUG Processing 334/872 atomic regions from SNP 100091 to 100691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,983 DEBUG Processing 339/843 atomic regions from SNP 101537 to 102137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,013 DEBUG Processing 223/1117 atomic regions from SNP 66822 to 67423 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,036 DEBUG Processing 138/638 atomic regions from SNP 41154 to 41754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,135 DEBUG Processing 253/465 atomic regions from SNP 75778 to 76378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,153 DEBUG Processing 257/1007 atomic regions from SNP 77056 to 77657 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,166 DEBUG Processing 335/872 atomic regions from SNP 100391 to 100991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,228 DEBUG Processing 340/843 atomic regions from SNP 101837 to 102437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,286 DEBUG Processing 139/638 atomic regions from SNP 41454 to 42054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,299 DEBUG Processing 224/1117 atomic regions from SNP 67123 to 67724 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,377 DEBUG Processing 254/465 atomic regions from SNP 76078 to 76678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,423 DEBUG Processing 336/872 atomic regions from SNP 100691 to 101291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,442 DEBUG Processing 258/1007 atomic regions from SNP 77357 to 77958 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,475 DEBUG Processing 341/843 atomic regions from SNP 102137 to 102737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,536 DEBUG Processing 140/638 atomic regions from SNP 41754 to 42354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,596 DEBUG Processing 225/1117 atomic regions from SNP 67424 to 68025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,620 DEBUG Processing 255/465 atomic regions from SNP 76378 to 76978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,680 DEBUG Processing 337/872 atomic regions from SNP 100991 to 101591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,726 DEBUG Processing 342/843 atomic regions from SNP 102437 to 103037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,728 DEBUG Processing 259/1007 atomic regions from SNP 77658 to 78259 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,786 DEBUG Processing 141/638 atomic regions from SNP 42054 to 42654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,865 DEBUG Processing 256/465 atomic regions from SNP 76678 to 77278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:14,894 DEBUG Processing 226/1117 atomic regions from SNP 67725 to 68326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,930 DEBUG Processing 338/872 atomic regions from SNP 101291 to 101891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,971 DEBUG Processing 343/843 atomic regions from SNP 102737 to 103337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,009 DEBUG Processing 260/1007 atomic regions from SNP 77959 to 78560 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,034 DEBUG Processing 142/638 atomic regions from SNP 42354 to 42954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,103 DEBUG Processing 257/465 atomic regions from SNP 76978 to 77578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,178 DEBUG Processing 339/872 atomic regions from SNP 101591 to 102191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,188 DEBUG Processing 227/1117 atomic regions from SNP 68026 to 68627 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,217 DEBUG Processing 344/843 atomic regions from SNP 103037 to 103637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,284 DEBUG Processing 143/638 atomic regions from SNP 42654 to 43254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,293 DEBUG Processing 261/1007 atomic regions from SNP 78260 to 78861 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,346 DEBUG Processing 258/465 atomic regions from SNP 77278 to 77878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,455 DEBUG Processing 340/872 atomic regions from SNP 101891 to 102491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,471 DEBUG Processing 345/843 atomic regions from SNP 103337 to 103937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,473 DEBUG Processing 228/1117 atomic regions from SNP 68327 to 68928 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,536 DEBUG Processing 144/638 atomic regions from SNP 42954 to 43554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,578 DEBUG Processing 262/1007 atomic regions from SNP 78561 to 79162 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,587 DEBUG Processing 259/465 atomic regions from SNP 77578 to 78178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,714 DEBUG Processing 341/872 atomic regions from SNP 102191 to 102791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,735 DEBUG Processing 346/843 atomic regions from SNP 103637 to 104237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,766 DEBUG Processing 229/1117 atomic regions from SNP 68628 to 69229 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,793 DEBUG Processing 145/638 atomic regions from SNP 43254 to 43854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,831 DEBUG Processing 260/465 atomic regions from SNP 77878 to 78478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:15,864 DEBUG Processing 263/1007 atomic regions from SNP 78862 to 79463 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,961 DEBUG Processing 342/872 atomic regions from SNP 102491 to 103091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,999 DEBUG Processing 347/843 atomic regions from SNP 103937 to 104537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,052 DEBUG Processing 146/638 atomic regions from SNP 43554 to 44154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,061 DEBUG Processing 230/1117 atomic regions from SNP 68929 to 69530 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,082 DEBUG Processing 261/465 atomic regions from SNP 78178 to 78778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,144 DEBUG Processing 264/1007 atomic regions from SNP 79163 to 79764 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,206 DEBUG Processing 343/872 atomic regions from SNP 102791 to 103391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,265 DEBUG Processing 348/843 atomic regions from SNP 104237 to 104837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,316 DEBUG Processing 147/638 atomic regions from SNP 43854 to 44454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,338 DEBUG Processing 262/465 atomic regions from SNP 78478 to 79078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,369 DEBUG Processing 231/1117 atomic regions from SNP 69230 to 69831 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,424 DEBUG Processing 265/1007 atomic regions from SNP 79464 to 80065 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,451 DEBUG Processing 344/872 atomic regions from SNP 103091 to 103691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,509 DEBUG Processing 349/843 atomic regions from SNP 104537 to 105137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,572 DEBUG Processing 148/638 atomic regions from SNP 44154 to 44754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,594 DEBUG Processing 263/465 atomic regions from SNP 78778 to 79378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,672 DEBUG Processing 232/1117 atomic regions from SNP 69531 to 70132 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,697 DEBUG Processing 345/872 atomic regions from SNP 103391 to 103991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,700 DEBUG Processing 266/1007 atomic regions from SNP 79765 to 80366 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,750 DEBUG Processing 350/843 atomic regions from SNP 104837 to 105437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,824 DEBUG Processing 149/638 atomic regions from SNP 44454 to 45054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,842 DEBUG Processing 264/465 atomic regions from SNP 79078 to 79678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:16,947 DEBUG Processing 346/872 atomic regions from SNP 103691 to 104291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,978 DEBUG Processing 233/1117 atomic regions from SNP 69832 to 70433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,980 DEBUG Processing 267/1007 atomic regions from SNP 80066 to 80667 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,994 DEBUG Processing 351/843 atomic regions from SNP 105137 to 105737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,070 DEBUG Processing 150/638 atomic regions from SNP 44754 to 45354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,084 DEBUG Processing 265/465 atomic regions from SNP 79378 to 79978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,200 DEBUG Processing 347/872 atomic regions from SNP 103991 to 104591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,245 DEBUG Processing 352/843 atomic regions from SNP 105437 to 106037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,265 DEBUG Processing 268/1007 atomic regions from SNP 80367 to 80968 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,290 DEBUG Processing 234/1117 atomic regions from SNP 70133 to 70734 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,321 DEBUG Processing 151/638 atomic regions from SNP 45054 to 45654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,345 DEBUG Processing 266/465 atomic regions from SNP 79678 to 80278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,465 DEBUG Processing 348/872 atomic regions from SNP 104291 to 104891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,491 DEBUG Processing 353/843 atomic regions from SNP 105737 to 106337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,548 DEBUG Processing 269/1007 atomic regions from SNP 80668 to 81269 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,572 DEBUG Processing 152/638 atomic regions from SNP 45354 to 45954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,580 DEBUG Processing 235/1117 atomic regions from SNP 70434 to 71035 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,588 DEBUG Processing 267/465 atomic regions from SNP 79978 to 80578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,733 DEBUG Processing 349/872 atomic regions from SNP 104591 to 105191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,735 DEBUG Processing 354/843 atomic regions from SNP 106037 to 106637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,828 DEBUG Processing 270/1007 atomic regions from SNP 80969 to 81570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,829 DEBUG Processing 153/638 atomic regions from SNP 45654 to 46254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,841 DEBUG Processing 268/465 atomic regions from SNP 80278 to 80878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:17,876 DEBUG Processing 236/1117 atomic regions from SNP 70735 to 71336 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,980 DEBUG Processing 355/843 atomic regions from SNP 106337 to 106937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,986 DEBUG Processing 350/872 atomic regions from SNP 104891 to 105491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,093 DEBUG Processing 154/638 atomic regions from SNP 45954 to 46554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,104 DEBUG Processing 269/465 atomic regions from SNP 80578 to 81178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,111 DEBUG Processing 271/1007 atomic regions from SNP 81270 to 81871 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,193 DEBUG Processing 237/1117 atomic regions from SNP 71036 to 71637 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,222 DEBUG Processing 356/843 atomic regions from SNP 106637 to 107237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,236 DEBUG Processing 351/872 atomic regions from SNP 105191 to 105791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,346 DEBUG Processing 155/638 atomic regions from SNP 46254 to 46854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,346 DEBUG Processing 270/465 atomic regions from SNP 80878 to 81478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,392 DEBUG Processing 272/1007 atomic regions from SNP 81571 to 82172 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,467 DEBUG Processing 357/843 atomic regions from SNP 106937 to 107537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,486 DEBUG Processing 352/872 atomic regions from SNP 105491 to 106091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,488 DEBUG Processing 238/1117 atomic regions from SNP 71337 to 71938 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,587 DEBUG Processing 271/465 atomic regions from SNP 81178 to 81778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,594 DEBUG Processing 156/638 atomic regions from SNP 46554 to 47154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,669 DEBUG Processing 273/1007 atomic regions from SNP 81872 to 82473 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,717 DEBUG Processing 358/843 atomic regions from SNP 107237 to 107837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,735 DEBUG Processing 353/872 atomic regions from SNP 105791 to 106391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,771 DEBUG Processing 239/1117 atomic regions from SNP 71638 to 72239 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,844 DEBUG Processing 272/465 atomic regions from SNP 81478 to 82078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:18,847 DEBUG Processing 157/638 atomic regions from SNP 46854 to 47454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,948 DEBUG Processing 274/1007 atomic regions from SNP 82173 to 82774 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,961 DEBUG Processing 359/843 atomic regions from SNP 107537 to 108137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,982 DEBUG Processing 354/872 atomic regions from SNP 106091 to 106691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,056 DEBUG Processing 240/1117 atomic regions from SNP 71939 to 72540 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,090 DEBUG Processing 273/465 atomic regions from SNP 81778 to 82378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,103 DEBUG Processing 158/638 atomic regions from SNP 47154 to 47754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,212 DEBUG Processing 360/843 atomic regions from SNP 107837 to 108437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,227 DEBUG Processing 275/1007 atomic regions from SNP 82474 to 83075 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,232 DEBUG Processing 355/872 atomic regions from SNP 106391 to 106991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,341 DEBUG Processing 274/465 atomic regions from SNP 82078 to 82678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,353 DEBUG Processing 241/1117 atomic regions from SNP 72240 to 72841 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,362 DEBUG Processing 159/638 atomic regions from SNP 47454 to 48054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,460 DEBUG Processing 361/843 atomic regions from SNP 108137 to 108737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,486 DEBUG Processing 356/872 atomic regions from SNP 106691 to 107291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,508 DEBUG Processing 276/1007 atomic regions from SNP 82775 to 83376 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,590 DEBUG Processing 275/465 atomic regions from SNP 82378 to 82978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,621 DEBUG Processing 160/638 atomic regions from SNP 47754 to 48354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,653 DEBUG Processing 242/1117 atomic regions from SNP 72541 to 73142 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,704 DEBUG Processing 362/843 atomic regions from SNP 108437 to 109037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,743 DEBUG Processing 357/872 atomic regions from SNP 106991 to 107591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,797 DEBUG Processing 277/1007 atomic regions from SNP 83076 to 83677 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,837 DEBUG Processing 276/465 atomic regions from SNP 82678 to 83278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:19,873 DEBUG Processing 161/638 atomic regions from SNP 48054 to 48654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,942 DEBUG Processing 363/843 atomic regions from SNP 108737 to 109337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,945 DEBUG Processing 243/1117 atomic regions from SNP 72842 to 73443 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,015 DEBUG Processing 358/872 atomic regions from SNP 107291 to 107891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,080 DEBUG Processing 277/465 atomic regions from SNP 82978 to 83578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,085 DEBUG Processing 278/1007 atomic regions from SNP 83377 to 83978 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,124 DEBUG Processing 162/638 atomic regions from SNP 48354 to 48954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,174 DEBUG Processing 364/843 atomic regions from SNP 109037 to 109637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,225 DEBUG Processing 244/1117 atomic regions from SNP 73143 to 73744 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,285 DEBUG Processing 359/872 atomic regions from SNP 107591 to 108191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,327 DEBUG Processing 278/465 atomic regions from SNP 83278 to 83878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,374 DEBUG Processing 279/1007 atomic regions from SNP 83678 to 84279 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,377 DEBUG Processing 163/638 atomic regions from SNP 48654 to 49254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,412 DEBUG Processing 365/843 atomic regions from SNP 109337 to 109937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,507 DEBUG Processing 245/1117 atomic regions from SNP 73444 to 74045 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,561 DEBUG Processing 360/872 atomic regions from SNP 107891 to 108491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,570 DEBUG Processing 279/465 atomic regions from SNP 83578 to 84178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,629 DEBUG Processing 164/638 atomic regions from SNP 48954 to 49554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,656 DEBUG Processing 366/843 atomic regions from SNP 109637 to 110237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,664 DEBUG Processing 280/1007 atomic regions from SNP 83979 to 84580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,787 DEBUG Processing 246/1117 atomic regions from SNP 73745 to 74346 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,815 DEBUG Processing 361/872 atomic regions from SNP 108191 to 108791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,817 DEBUG Processing 280/465 atomic regions from SNP 83878 to 84478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:20,882 DEBUG Processing 165/638 atomic regions from SNP 49254 to 49854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,901 DEBUG Processing 367/843 atomic regions from SNP 109937 to 110537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,944 DEBUG Processing 281/1007 atomic regions from SNP 84280 to 84881 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,062 DEBUG Processing 362/872 atomic regions from SNP 108491 to 109091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,063 DEBUG Processing 281/465 atomic regions from SNP 84178 to 84778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,075 DEBUG Processing 247/1117 atomic regions from SNP 74046 to 74647 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,140 DEBUG Processing 166/638 atomic regions from SNP 49554 to 50154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,151 DEBUG Processing 368/843 atomic regions from SNP 110237 to 110837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,230 DEBUG Processing 282/1007 atomic regions from SNP 84581 to 85182 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,308 DEBUG Processing 282/465 atomic regions from SNP 84478 to 85078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,310 DEBUG Processing 363/872 atomic regions from SNP 108791 to 109391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,370 DEBUG Processing 248/1117 atomic regions from SNP 74347 to 74948 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,403 DEBUG Processing 369/843 atomic regions from SNP 110537 to 111137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,403 DEBUG Processing 167/638 atomic regions from SNP 49854 to 50454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,518 DEBUG Processing 283/1007 atomic regions from SNP 84882 to 85483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,549 DEBUG Processing 283/465 atomic regions from SNP 84778 to 85378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,558 DEBUG Processing 364/872 atomic regions from SNP 109091 to 109691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,647 DEBUG Processing 370/843 atomic regions from SNP 110837 to 111437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,663 DEBUG Processing 168/638 atomic regions from SNP 50154 to 50754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,670 DEBUG Processing 249/1117 atomic regions from SNP 74648 to 75249 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,781 DEBUG Processing 284/465 atomic regions from SNP 85078 to 85678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:21,801 DEBUG Processing 284/1007 atomic regions from SNP 85183 to 85783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,805 DEBUG Processing 365/872 atomic regions from SNP 109391 to 109991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,892 DEBUG Processing 371/843 atomic regions from SNP 111137 to 111737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,920 DEBUG Processing 169/638 atomic regions from SNP 50454 to 51054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,963 DEBUG Processing 250/1117 atomic regions from SNP 74949 to 75550 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,016 DEBUG Processing 285/465 atomic regions from SNP 85378 to 85978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,056 DEBUG Processing 366/872 atomic regions from SNP 109691 to 110291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,082 DEBUG Processing 285/1007 atomic regions from SNP 85483 to 86083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,138 DEBUG Processing 372/843 atomic regions from SNP 111437 to 112037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,174 DEBUG Processing 170/638 atomic regions from SNP 50754 to 51354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,257 DEBUG Processing 251/1117 atomic regions from SNP 75250 to 75851 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,258 DEBUG Processing 286/465 atomic regions from SNP 85678 to 86278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,304 DEBUG Processing 367/872 atomic regions from SNP 109991 to 110591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,366 DEBUG Processing 286/1007 atomic regions from SNP 85783 to 86383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,393 DEBUG Processing 373/843 atomic regions from SNP 111737 to 112337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,424 DEBUG Processing 171/638 atomic regions from SNP 51054 to 51654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,504 DEBUG Processing 287/465 atomic regions from SNP 85978 to 86578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,551 DEBUG Processing 252/1117 atomic regions from SNP 75551 to 76152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,555 DEBUG Processing 368/872 atomic regions from SNP 110291 to 110891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,646 DEBUG Processing 374/843 atomic regions from SNP 112037 to 112637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,651 DEBUG Processing 287/1007 atomic regions from SNP 86083 to 86683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,671 DEBUG Processing 172/638 atomic regions from SNP 51354 to 51954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,750 DEBUG Processing 288/465 atomic regions from SNP 86278 to 86878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:22,806 DEBUG Processing 369/872 atomic regions from SNP 110591 to 111191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,842 DEBUG Processing 253/1117 atomic regions from SNP 75852 to 76453 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,901 DEBUG Processing 375/843 atomic regions from SNP 112337 to 112937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,916 DEBUG Processing 173/638 atomic regions from SNP 51654 to 52254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,937 DEBUG Processing 288/1007 atomic regions from SNP 86383 to 86983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,993 DEBUG Processing 289/465 atomic regions from SNP 86578 to 87178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,058 DEBUG Processing 370/872 atomic regions from SNP 110891 to 111491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,129 DEBUG Processing 254/1117 atomic regions from SNP 76153 to 76754 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,158 DEBUG Processing 376/843 atomic regions from SNP 112637 to 113237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,163 DEBUG Processing 174/638 atomic regions from SNP 51954 to 52554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,220 DEBUG Processing 289/1007 atomic regions from SNP 86683 to 87283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,231 DEBUG Processing 290/465 atomic regions from SNP 86878 to 87478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,304 DEBUG Processing 371/872 atomic regions from SNP 111191 to 111791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,415 DEBUG Processing 377/843 atomic regions from SNP 112937 to 113537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,419 DEBUG Processing 175/638 atomic regions from SNP 52254 to 52854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,423 DEBUG Processing 255/1117 atomic regions from SNP 76454 to 77055 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,471 DEBUG Processing 291/465 atomic regions from SNP 87178 to 87778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,499 DEBUG Processing 290/1007 atomic regions from SNP 86983 to 87583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,545 DEBUG Processing 372/872 atomic regions from SNP 111491 to 112091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,667 DEBUG Processing 378/843 atomic regions from SNP 113237 to 113837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,677 DEBUG Processing 176/638 atomic regions from SNP 52554 to 53154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,715 DEBUG Processing 292/465 atomic regions from SNP 87478 to 88078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:23,720 DEBUG Processing 256/1117 atomic regions from SNP 76755 to 77356 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,778 DEBUG Processing 291/1007 atomic regions from SNP 87283 to 87883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,791 DEBUG Processing 373/872 atomic regions from SNP 111791 to 112391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,921 DEBUG Processing 379/843 atomic regions from SNP 113537 to 114137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,936 DEBUG Processing 177/638 atomic regions from SNP 52854 to 53454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,967 DEBUG Processing 293/465 atomic regions from SNP 87778 to 88378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,018 DEBUG Processing 257/1117 atomic regions from SNP 77056 to 77657 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,038 DEBUG Processing 374/872 atomic regions from SNP 112091 to 112691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,055 DEBUG Processing 292/1007 atomic regions from SNP 87583 to 88183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,167 DEBUG Processing 380/843 atomic regions from SNP 113837 to 114437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,196 DEBUG Processing 178/638 atomic regions from SNP 53154 to 53754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,211 DEBUG Processing 294/465 atomic regions from SNP 88078 to 88678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,288 DEBUG Processing 375/872 atomic regions from SNP 112391 to 112991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,307 DEBUG Processing 258/1117 atomic regions from SNP 77357 to 77958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,330 DEBUG Processing 293/1007 atomic regions from SNP 87883 to 88483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,415 DEBUG Processing 381/843 atomic regions from SNP 114137 to 114737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,446 DEBUG Processing 179/638 atomic regions from SNP 53454 to 54054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,456 DEBUG Processing 295/465 atomic regions from SNP 88378 to 88978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,541 DEBUG Processing 376/872 atomic regions from SNP 112691 to 113291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,592 DEBUG Processing 259/1117 atomic regions from SNP 77658 to 78259 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,604 DEBUG Processing 294/1007 atomic regions from SNP 88183 to 88783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,672 DEBUG Processing 382/843 atomic regions from SNP 114437 to 115037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,697 DEBUG Processing 180/638 atomic regions from SNP 53754 to 54354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,698 DEBUG Processing 296/465 atomic regions from SNP 88678 to 89278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:24,786 DEBUG Processing 377/872 atomic regions from SNP 112991 to 113591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,874 DEBUG Processing 295/1007 atomic regions from SNP 88483 to 89083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,876 DEBUG Processing 260/1117 atomic regions from SNP 77959 to 78560 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,920 DEBUG Processing 383/843 atomic regions from SNP 114737 to 115337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,945 DEBUG Processing 181/638 atomic regions from SNP 54054 to 54654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,973 DEBUG Processing 297/465 atomic regions from SNP 88978 to 89578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,034 DEBUG Processing 378/872 atomic regions from SNP 113291 to 113891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,148 DEBUG Processing 296/1007 atomic regions from SNP 88783 to 89383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,165 DEBUG Processing 261/1117 atomic regions from SNP 78260 to 78861 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,171 DEBUG Processing 384/843 atomic regions from SNP 115037 to 115637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,197 DEBUG Processing 182/638 atomic regions from SNP 54354 to 54954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,222 DEBUG Processing 298/465 atomic regions from SNP 89278 to 89878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,284 DEBUG Processing 379/872 atomic regions from SNP 113591 to 114191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,419 DEBUG Processing 385/843 atomic regions from SNP 115337 to 115937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,425 DEBUG Processing 297/1007 atomic regions from SNP 89083 to 89683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,450 DEBUG Processing 183/638 atomic regions from SNP 54654 to 55254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,456 DEBUG Processing 262/1117 atomic regions from SNP 78561 to 79162 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,484 DEBUG Processing 299/465 atomic regions from SNP 89578 to 90178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,534 DEBUG Processing 380/872 atomic regions from SNP 113891 to 114491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,664 DEBUG Processing 386/843 atomic regions from SNP 115637 to 116237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,702 DEBUG Processing 184/638 atomic regions from SNP 54954 to 55554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,702 DEBUG Processing 298/1007 atomic regions from SNP 89383 to 89983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,745 DEBUG Processing 263/1117 atomic regions from SNP 78862 to 79463 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,747 DEBUG Processing 300/465 atomic regions from SNP 89878 to 90478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:25,785 DEBUG Processing 381/872 atomic regions from SNP 114191 to 114791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,911 DEBUG Processing 387/843 atomic regions from SNP 115937 to 116537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,948 DEBUG Processing 185/638 atomic regions from SNP 55254 to 55854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,980 DEBUG Processing 299/1007 atomic regions from SNP 89683 to 90283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,991 DEBUG Processing 301/465 atomic regions from SNP 90178 to 90778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,037 DEBUG Processing 382/872 atomic regions from SNP 114491 to 115091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,040 DEBUG Processing 264/1117 atomic regions from SNP 79163 to 79764 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,187 DEBUG Processing 388/843 atomic regions from SNP 116237 to 116837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,192 DEBUG Processing 186/638 atomic regions from SNP 55554 to 56154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,234 DEBUG Processing 302/465 atomic regions from SNP 90478 to 91078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,254 DEBUG Processing 300/1007 atomic regions from SNP 89983 to 90583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,289 DEBUG Processing 383/872 atomic regions from SNP 114791 to 115391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,335 DEBUG Processing 265/1117 atomic regions from SNP 79464 to 80065 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,437 DEBUG Processing 389/843 atomic regions from SNP 116537 to 117137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,439 DEBUG Processing 187/638 atomic regions from SNP 55854 to 56454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,472 DEBUG Processing 303/465 atomic regions from SNP 90778 to 91378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,531 DEBUG Processing 301/1007 atomic regions from SNP 90283 to 90883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,540 DEBUG Processing 384/872 atomic regions from SNP 115091 to 115691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,630 DEBUG Processing 266/1117 atomic regions from SNP 79765 to 80366 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,684 DEBUG Processing 188/638 atomic regions from SNP 56154 to 56754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,698 DEBUG Processing 390/843 atomic regions from SNP 116837 to 117437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,707 DEBUG Processing 304/465 atomic regions from SNP 91078 to 91678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,792 DEBUG Processing 385/872 atomic regions from SNP 115391 to 115991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,807 DEBUG Processing 302/1007 atomic regions from SNP 90583 to 91183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,924 DEBUG Processing 267/1117 atomic regions from SNP 80066 to 80667 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,942 DEBUG Processing 189/638 atomic regions from SNP 56454 to 57054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,943 DEBUG Processing 305/465 atomic regions from SNP 91378 to 91978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:26,960 DEBUG Processing 391/843 atomic regions from SNP 117137 to 117737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,052 DEBUG Processing 386/872 atomic regions from SNP 115691 to 116291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,097 DEBUG Processing 303/1007 atomic regions from SNP 90883 to 91483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,187 DEBUG Processing 306/465 atomic regions from SNP 91678 to 92278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,194 DEBUG Processing 190/638 atomic regions from SNP 56754 to 57354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,203 DEBUG Processing 392/843 atomic regions from SNP 117437 to 118037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,214 DEBUG Processing 268/1117 atomic regions from SNP 80367 to 80968 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,301 DEBUG Processing 387/872 atomic regions from SNP 115991 to 116591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,381 DEBUG Processing 304/1007 atomic regions from SNP 91183 to 91783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,438 DEBUG Processing 307/465 atomic regions from SNP 91978 to 92578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,449 DEBUG Processing 393/843 atomic regions from SNP 117737 to 118337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,452 DEBUG Processing 191/638 atomic regions from SNP 57054 to 57654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,512 DEBUG Processing 269/1117 atomic regions from SNP 80668 to 81269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,553 DEBUG Processing 388/872 atomic regions from SNP 116291 to 116891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,661 DEBUG Processing 305/1007 atomic regions from SNP 91483 to 92083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,686 DEBUG Processing 308/465 atomic regions from SNP 92278 to 92878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,693 DEBUG Processing 394/843 atomic regions from SNP 118037 to 118637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,708 DEBUG Processing 192/638 atomic regions from SNP 57354 to 57954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,802 DEBUG Processing 389/872 atomic regions from SNP 116591 to 117191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,804 DEBUG Processing 270/1117 atomic regions from SNP 80969 to 81570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,942 DEBUG Processing 306/1007 atomic regions from SNP 91783 to 92383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,944 DEBUG Processing 309/465 atomic regions from SNP 92578 to 93178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:27,968 DEBUG Processing 395/843 atomic regions from SNP 118337 to 118937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,968 DEBUG Processing 193/638 atomic regions from SNP 57654 to 58254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,057 DEBUG Processing 390/872 atomic regions from SNP 116891 to 117491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,091 DEBUG Processing 271/1117 atomic regions from SNP 81270 to 81871 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,218 DEBUG Processing 310/465 atomic regions from SNP 92878 to 93478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,221 DEBUG Processing 307/1007 atomic regions from SNP 92083 to 92683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,227 DEBUG Processing 396/843 atomic regions from SNP 118637 to 119237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,234 DEBUG Processing 194/638 atomic regions from SNP 57954 to 58554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,310 DEBUG Processing 391/872 atomic regions from SNP 117191 to 117791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,375 DEBUG Processing 272/1117 atomic regions from SNP 81571 to 82172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,474 DEBUG Processing 397/843 atomic regions from SNP 118937 to 119537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,480 DEBUG Processing 311/465 atomic regions from SNP 93178 to 93778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,491 DEBUG Processing 195/638 atomic regions from SNP 58254 to 58854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,502 DEBUG Processing 308/1007 atomic regions from SNP 92383 to 92983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,566 DEBUG Processing 392/872 atomic regions from SNP 117491 to 118091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,659 DEBUG Processing 273/1117 atomic regions from SNP 81872 to 82473 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,719 DEBUG Processing 398/843 atomic regions from SNP 119237 to 119837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,745 DEBUG Processing 196/638 atomic regions from SNP 58554 to 59154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,762 DEBUG Processing 312/465 atomic regions from SNP 93478 to 94078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:28,780 DEBUG Processing 309/1007 atomic regions from SNP 92683 to 93283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,819 DEBUG Processing 393/872 atomic regions from SNP 117791 to 118391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,946 DEBUG Processing 274/1117 atomic regions from SNP 82173 to 82774 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,967 DEBUG Processing 399/843 atomic regions from SNP 119537 to 120137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,007 DEBUG Processing 197/638 atomic regions from SNP 58854 to 59454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,027 DEBUG Processing 313/465 atomic regions from SNP 93778 to 94378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,062 DEBUG Processing 310/1007 atomic regions from SNP 92983 to 93583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,070 DEBUG Processing 394/872 atomic regions from SNP 118091 to 118691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,218 DEBUG Processing 400/843 atomic regions from SNP 119837 to 120437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,237 DEBUG Processing 275/1117 atomic regions from SNP 82474 to 83075 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,264 DEBUG Processing 198/638 atomic regions from SNP 59154 to 59754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,284 DEBUG Processing 314/465 atomic regions from SNP 94078 to 94678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,323 DEBUG Processing 395/872 atomic regions from SNP 118391 to 118991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,345 DEBUG Processing 311/1007 atomic regions from SNP 93283 to 93883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,470 DEBUG Processing 401/843 atomic regions from SNP 120137 to 120737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,525 DEBUG Processing 199/638 atomic regions from SNP 59454 to 60054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,540 DEBUG Processing 276/1117 atomic regions from SNP 82775 to 83376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,554 DEBUG Processing 315/465 atomic regions from SNP 94378 to 94978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,579 DEBUG Processing 396/872 atomic regions from SNP 118691 to 119291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,626 DEBUG Processing 312/1007 atomic regions from SNP 93583 to 94183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,725 DEBUG Processing 402/843 atomic regions from SNP 120437 to 121037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,788 DEBUG Processing 200/638 atomic regions from SNP 59754 to 60354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,829 DEBUG Processing 316/465 atomic regions from SNP 94678 to 95278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:29,844 DEBUG Processing 397/872 atomic regions from SNP 118991 to 119591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,849 DEBUG Processing 277/1117 atomic regions from SNP 83076 to 83676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,912 DEBUG Processing 313/1007 atomic regions from SNP 93883 to 94483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,972 DEBUG Processing 403/843 atomic regions from SNP 120737 to 121337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,044 DEBUG Processing 201/638 atomic regions from SNP 60054 to 60654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,085 DEBUG Processing 317/465 atomic regions from SNP 94978 to 95578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,099 DEBUG Processing 398/872 atomic regions from SNP 119291 to 119891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,179 DEBUG Processing 278/1117 atomic regions from SNP 83376 to 83976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,197 DEBUG Processing 314/1007 atomic regions from SNP 94183 to 94783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,218 DEBUG Processing 404/843 atomic regions from SNP 121037 to 121637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,292 DEBUG Processing 202/638 atomic regions from SNP 60354 to 60954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,330 DEBUG Processing 318/465 atomic regions from SNP 95278 to 95878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,352 DEBUG Processing 399/872 atomic regions from SNP 119591 to 120191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,463 DEBUG Processing 405/843 atomic regions from SNP 121337 to 121937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,483 DEBUG Processing 279/1117 atomic regions from SNP 83676 to 84276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,501 DEBUG Processing 315/1007 atomic regions from SNP 94483 to 95083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,541 DEBUG Processing 203/638 atomic regions from SNP 60654 to 61254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,574 DEBUG Processing 319/465 atomic regions from SNP 95578 to 96178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,608 DEBUG Processing 400/872 atomic regions from SNP 119891 to 120491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,709 DEBUG Processing 406/843 atomic regions from SNP 121637 to 122237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,779 DEBUG Processing 280/1117 atomic regions from SNP 83976 to 84576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,782 DEBUG Processing 316/1007 atomic regions from SNP 94783 to 95383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,786 DEBUG Processing 204/638 atomic regions from SNP 60954 to 61554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,818 DEBUG Processing 320/465 atomic regions from SNP 95878 to 96478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:30,863 DEBUG Processing 401/872 atomic regions from SNP 120191 to 120791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,954 DEBUG Processing 407/843 atomic regions from SNP 121937 to 122537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,031 DEBUG Processing 205/638 atomic regions from SNP 61254 to 61854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,059 DEBUG Processing 321/465 atomic regions from SNP 96178 to 96778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,066 DEBUG Processing 317/1007 atomic regions from SNP 95083 to 95683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,070 DEBUG Processing 281/1117 atomic regions from SNP 84276 to 84876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,128 DEBUG Processing 402/872 atomic regions from SNP 120491 to 121091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,195 DEBUG Processing 408/843 atomic regions from SNP 122237 to 122837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,273 DEBUG Processing 206/638 atomic regions from SNP 61554 to 62154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,305 DEBUG Processing 322/465 atomic regions from SNP 96478 to 97078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,340 DEBUG Processing 318/1007 atomic regions from SNP 95383 to 95983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,373 DEBUG Processing 282/1117 atomic regions from SNP 84576 to 85176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,429 DEBUG Processing 403/872 atomic regions from SNP 120791 to 121391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,468 DEBUG Processing 409/843 atomic regions from SNP 122537 to 123137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,526 DEBUG Processing 207/638 atomic regions from SNP 61854 to 62454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,543 DEBUG Processing 323/465 atomic regions from SNP 96778 to 97378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,612 DEBUG Processing 319/1007 atomic regions from SNP 95683 to 96283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,668 DEBUG Processing 283/1117 atomic regions from SNP 84876 to 85476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,719 DEBUG Processing 404/872 atomic regions from SNP 121091 to 121691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,758 DEBUG Processing 410/843 atomic regions from SNP 122837 to 123437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,809 DEBUG Processing 208/638 atomic regions from SNP 62154 to 62754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,815 DEBUG Processing 324/465 atomic regions from SNP 97078 to 97678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:31,889 DEBUG Processing 320/1007 atomic regions from SNP 95983 to 96583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,963 DEBUG Processing 284/1117 atomic regions from SNP 85176 to 85776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,968 DEBUG Processing 405/872 atomic regions from SNP 121391 to 121991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,009 DEBUG Processing 411/843 atomic regions from SNP 123137 to 123737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,083 DEBUG Processing 325/465 atomic regions from SNP 97378 to 97978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,089 DEBUG Processing 209/638 atomic regions from SNP 62454 to 63054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,185 DEBUG Processing 321/1007 atomic regions from SNP 96283 to 96883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,217 DEBUG Processing 406/872 atomic regions from SNP 121691 to 122291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,251 DEBUG Processing 412/843 atomic regions from SNP 123437 to 124037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,262 DEBUG Processing 285/1117 atomic regions from SNP 85476 to 86076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,319 DEBUG Processing 326/465 atomic regions from SNP 97678 to 98278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,329 DEBUG Processing 210/638 atomic regions from SNP 62754 to 63354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,470 DEBUG Processing 407/872 atomic regions from SNP 121991 to 122591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,473 DEBUG Processing 322/1007 atomic regions from SNP 96583 to 97183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,517 DEBUG Processing 413/843 atomic regions from SNP 123737 to 124337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,557 DEBUG Processing 327/465 atomic regions from SNP 97978 to 98578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,560 DEBUG Processing 286/1117 atomic regions from SNP 85776 to 86376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,577 DEBUG Processing 211/638 atomic regions from SNP 63054 to 63654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,725 DEBUG Processing 408/872 atomic regions from SNP 122291 to 122891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,758 DEBUG Processing 323/1007 atomic regions from SNP 96883 to 97483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,778 DEBUG Processing 414/843 atomic regions from SNP 124037 to 124637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,801 DEBUG Processing 328/465 atomic regions from SNP 98278 to 98878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:32,826 DEBUG Processing 212/638 atomic regions from SNP 63354 to 63954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,850 DEBUG Processing 287/1117 atomic regions from SNP 86076 to 86676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,983 DEBUG Processing 409/872 atomic regions from SNP 122591 to 123191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,035 DEBUG Processing 415/843 atomic regions from SNP 124337 to 124937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,042 DEBUG Processing 324/1007 atomic regions from SNP 97183 to 97783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,044 DEBUG Processing 329/465 atomic regions from SNP 98578 to 99178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,076 DEBUG Processing 213/638 atomic regions from SNP 63654 to 64254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,141 DEBUG Processing 288/1117 atomic regions from SNP 86376 to 86976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,241 DEBUG Processing 410/872 atomic regions from SNP 122891 to 123491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,289 DEBUG Processing 330/465 atomic regions from SNP 98878 to 99478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,290 DEBUG Processing 416/843 atomic regions from SNP 124637 to 125237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,327 DEBUG Processing 214/638 atomic regions from SNP 63954 to 64554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,330 DEBUG Processing 325/1007 atomic regions from SNP 97483 to 98083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,439 DEBUG Processing 289/1117 atomic regions from SNP 86676 to 87276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,502 DEBUG Processing 411/872 atomic regions from SNP 123191 to 123791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,544 DEBUG Processing 331/465 atomic regions from SNP 99178 to 99778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,548 DEBUG Processing 417/843 atomic regions from SNP 124937 to 125537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,584 DEBUG Processing 215/638 atomic regions from SNP 64254 to 64854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,625 DEBUG Processing 326/1007 atomic regions from SNP 97783 to 98383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,733 DEBUG Processing 290/1117 atomic regions from SNP 86976 to 87576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,774 DEBUG Processing 412/872 atomic regions from SNP 123491 to 124091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,837 DEBUG Processing 332/465 atomic regions from SNP 99478 to 100078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:33,844 DEBUG Processing 418/843 atomic regions from SNP 125237 to 125837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,879 DEBUG Processing 216/638 atomic regions from SNP 64554 to 65154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,938 DEBUG Processing 327/1007 atomic regions from SNP 98083 to 98683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,013 DEBUG Processing 413/872 atomic regions from SNP 123791 to 124391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,018 DEBUG Processing 291/1117 atomic regions from SNP 87276 to 87876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,086 DEBUG Processing 333/465 atomic regions from SNP 99778 to 100378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,103 DEBUG Processing 419/843 atomic regions from SNP 125537 to 126137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,171 DEBUG Processing 217/638 atomic regions from SNP 64854 to 65454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,254 DEBUG Processing 328/1007 atomic regions from SNP 98383 to 98983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,265 DEBUG Processing 414/872 atomic regions from SNP 124091 to 124691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,317 DEBUG Processing 292/1117 atomic regions from SNP 87576 to 88176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,330 DEBUG Processing 334/465 atomic regions from SNP 100078 to 100678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,349 DEBUG Processing 420/843 atomic regions from SNP 125837 to 126437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,420 DEBUG Processing 218/638 atomic regions from SNP 65154 to 65754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,529 DEBUG Processing 415/872 atomic regions from SNP 124391 to 124991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,539 DEBUG Processing 329/1007 atomic regions from SNP 98683 to 99283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,583 DEBUG Processing 335/465 atomic regions from SNP 100378 to 100978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,595 DEBUG Processing 421/843 atomic regions from SNP 126137 to 126737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,627 DEBUG Processing 293/1117 atomic regions from SNP 87876 to 88476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,667 DEBUG Processing 219/638 atomic regions from SNP 65454 to 66054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,815 DEBUG Processing 416/872 atomic regions from SNP 124691 to 125291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,826 DEBUG Processing 330/1007 atomic regions from SNP 98983 to 99583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,838 DEBUG Processing 336/465 atomic regions from SNP 100678 to 101278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:34,849 DEBUG Processing 422/843 atomic regions from SNP 126437 to 127037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,918 DEBUG Processing 220/638 atomic regions from SNP 65754 to 66354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,931 DEBUG Processing 294/1117 atomic regions from SNP 88176 to 88776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,085 DEBUG Processing 417/872 atomic regions from SNP 124991 to 125591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,121 DEBUG Processing 337/465 atomic regions from SNP 100978 to 101578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,125 DEBUG Processing 423/843 atomic regions from SNP 126737 to 127337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,138 DEBUG Processing 331/1007 atomic regions from SNP 99283 to 99883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,197 DEBUG Processing 221/638 atomic regions from SNP 66054 to 66654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,272 DEBUG Processing 295/1117 atomic regions from SNP 88476 to 89076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,347 DEBUG Processing 418/872 atomic regions from SNP 125291 to 125891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,370 DEBUG Processing 338/465 atomic regions from SNP 101278 to 101878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,381 DEBUG Processing 424/843 atomic regions from SNP 127037 to 127637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,425 DEBUG Processing 332/1007 atomic regions from SNP 99583 to 100183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,467 DEBUG Processing 222/638 atomic regions from SNP 66354 to 66954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,579 DEBUG Processing 296/1117 atomic regions from SNP 88776 to 89376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,606 DEBUG Processing 419/872 atomic regions from SNP 125591 to 126191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,610 DEBUG Processing 339/465 atomic regions from SNP 101578 to 102178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,630 DEBUG Processing 425/843 atomic regions from SNP 127337 to 127937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,714 DEBUG Processing 333/1007 atomic regions from SNP 99883 to 100483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,724 DEBUG Processing 223/638 atomic regions from SNP 66654 to 67254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,856 DEBUG Processing 340/465 atomic regions from SNP 101878 to 102478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:35,860 DEBUG Processing 420/872 atomic regions from SNP 125891 to 126491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,866 DEBUG Processing 297/1117 atomic regions from SNP 89076 to 89676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,875 DEBUG Processing 426/843 atomic regions from SNP 127637 to 128237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,981 DEBUG Processing 224/638 atomic regions from SNP 66954 to 67554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,983 DEBUG Processing 334/1007 atomic regions from SNP 100183 to 100783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,120 DEBUG Processing 341/465 atomic regions from SNP 102178 to 102778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,131 DEBUG Processing 421/872 atomic regions from SNP 126191 to 126791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,132 DEBUG Processing 427/843 atomic regions from SNP 127937 to 128537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,169 DEBUG Processing 298/1117 atomic regions from SNP 89376 to 89976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,265 DEBUG Processing 225/638 atomic regions from SNP 67254 to 67854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,285 DEBUG Processing 335/1007 atomic regions from SNP 100483 to 101083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,371 DEBUG Processing 342/465 atomic regions from SNP 102478 to 103078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,385 DEBUG Processing 428/843 atomic regions from SNP 128237 to 128837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,391 DEBUG Processing 422/872 atomic regions from SNP 126491 to 127091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,451 DEBUG Processing 299/1117 atomic regions from SNP 89676 to 90276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,535 DEBUG Processing 226/638 atomic regions from SNP 67554 to 68154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,570 DEBUG Processing 336/1007 atomic regions from SNP 100783 to 101383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,659 DEBUG Processing 343/465 atomic regions from SNP 102778 to 103378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,675 DEBUG Processing 429/843 atomic regions from SNP 128537 to 129137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,682 DEBUG Processing 423/872 atomic regions from SNP 126791 to 127391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,763 DEBUG Processing 300/1117 atomic regions from SNP 89976 to 90576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,820 DEBUG Processing 227/638 atomic regions from SNP 67854 to 68454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,873 DEBUG Processing 337/1007 atomic regions from SNP 101083 to 101683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,939 DEBUG Processing 344/465 atomic regions from SNP 103078 to 103678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:36,945 DEBUG Processing 430/843 atomic regions from SNP 128837 to 129437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,962 DEBUG Processing 424/872 atomic regions from SNP 127091 to 127691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,070 DEBUG Processing 301/1117 atomic regions from SNP 90276 to 90876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,083 DEBUG Processing 228/638 atomic regions from SNP 68154 to 68754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,165 DEBUG Processing 338/1007 atomic regions from SNP 101383 to 101983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,191 DEBUG Processing 345/465 atomic regions from SNP 103378 to 103978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,208 DEBUG Processing 431/843 atomic regions from SNP 129137 to 129737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,232 DEBUG Processing 425/872 atomic regions from SNP 127391 to 127991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,363 DEBUG Processing 229/638 atomic regions from SNP 68454 to 69054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,388 DEBUG Processing 302/1117 atomic regions from SNP 90576 to 91176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,452 DEBUG Processing 346/465 atomic regions from SNP 103678 to 104278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,463 DEBUG Processing 339/1007 atomic regions from SNP 101683 to 102283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,475 DEBUG Processing 432/843 atomic regions from SNP 129437 to 130037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,508 DEBUG Processing 426/872 atomic regions from SNP 127691 to 128291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,620 DEBUG Processing 230/638 atomic regions from SNP 68754 to 69354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,694 DEBUG Processing 303/1117 atomic regions from SNP 90876 to 91476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,700 DEBUG Processing 347/465 atomic regions from SNP 103978 to 104578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,721 DEBUG Processing 433/843 atomic regions from SNP 129737 to 130337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,747 DEBUG Processing 340/1007 atomic regions from SNP 101983 to 102583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,760 DEBUG Processing 427/872 atomic regions from SNP 127991 to 128591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,875 DEBUG Processing 231/638 atomic regions from SNP 69054 to 69654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,956 DEBUG Processing 348/465 atomic regions from SNP 104278 to 104878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:37,968 DEBUG Processing 434/843 atomic regions from SNP 130037 to 130637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,993 DEBUG Processing 304/1117 atomic regions from SNP 91176 to 91776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,015 DEBUG Processing 428/872 atomic regions from SNP 128291 to 128891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,027 DEBUG Processing 341/1007 atomic regions from SNP 102283 to 102883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,128 DEBUG Processing 232/638 atomic regions from SNP 69354 to 69954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,207 DEBUG Processing 349/465 atomic regions from SNP 104578 to 105178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,212 DEBUG Processing 435/843 atomic regions from SNP 130337 to 130937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,273 DEBUG Processing 429/872 atomic regions from SNP 128591 to 129191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,295 DEBUG Processing 305/1117 atomic regions from SNP 91476 to 92076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,317 DEBUG Processing 342/1007 atomic regions from SNP 102583 to 103183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,386 DEBUG Processing 233/638 atomic regions from SNP 69654 to 70254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,454 DEBUG Processing 350/465 atomic regions from SNP 104878 to 105478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,455 DEBUG Processing 436/843 atomic regions from SNP 130637 to 131237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,526 DEBUG Processing 430/872 atomic regions from SNP 128891 to 129491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,586 DEBUG Processing 306/1117 atomic regions from SNP 91776 to 92376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,593 DEBUG Processing 343/1007 atomic regions from SNP 102883 to 103483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,635 DEBUG Processing 234/638 atomic regions from SNP 69954 to 70554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,695 DEBUG Processing 437/843 atomic regions from SNP 130937 to 131537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,726 DEBUG Processing 351/465 atomic regions from SNP 105178 to 105778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:38,775 DEBUG Processing 431/872 atomic regions from SNP 129191 to 129791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,869 DEBUG Processing 344/1007 atomic regions from SNP 103183 to 103783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,879 DEBUG Processing 307/1117 atomic regions from SNP 92076 to 92676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,886 DEBUG Processing 235/638 atomic regions from SNP 70254 to 70854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,941 DEBUG Processing 438/843 atomic regions from SNP 131237 to 131837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,997 DEBUG Processing 352/465 atomic regions from SNP 105478 to 106078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,020 DEBUG Processing 432/872 atomic regions from SNP 129491 to 130091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,138 DEBUG Processing 236/638 atomic regions from SNP 70554 to 71154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,145 DEBUG Processing 345/1007 atomic regions from SNP 103483 to 104083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,171 DEBUG Processing 308/1117 atomic regions from SNP 92376 to 92976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,186 DEBUG Processing 439/843 atomic regions from SNP 131537 to 132137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,259 DEBUG Processing 353/465 atomic regions from SNP 105778 to 106378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,268 DEBUG Processing 433/872 atomic regions from SNP 129791 to 130391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,391 DEBUG Processing 237/638 atomic regions from SNP 70854 to 71454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,423 DEBUG Processing 346/1007 atomic regions from SNP 103783 to 104383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,434 DEBUG Processing 440/843 atomic regions from SNP 131837 to 132437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,466 DEBUG Processing 309/1117 atomic regions from SNP 92676 to 93276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,509 DEBUG Processing 354/465 atomic regions from SNP 106078 to 106678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,519 DEBUG Processing 434/872 atomic regions from SNP 130091 to 130691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,648 DEBUG Processing 238/638 atomic regions from SNP 71154 to 71754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,682 DEBUG Processing 441/843 atomic regions from SNP 132137 to 132737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,704 DEBUG Processing 347/1007 atomic regions from SNP 104083 to 104683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,757 DEBUG Processing 355/465 atomic regions from SNP 106378 to 106978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:39,761 DEBUG Processing 310/1117 atomic regions from SNP 92976 to 93576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,766 DEBUG Processing 435/872 atomic regions from SNP 130391 to 130991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,899 DEBUG Processing 239/638 atomic regions from SNP 71454 to 72054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,926 DEBUG Processing 442/843 atomic regions from SNP 132437 to 133037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,981 DEBUG Processing 348/1007 atomic regions from SNP 104383 to 104983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,015 DEBUG Processing 436/872 atomic regions from SNP 130691 to 131291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,021 DEBUG Processing 356/465 atomic regions from SNP 106678 to 107278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,052 DEBUG Processing 311/1117 atomic regions from SNP 93276 to 93876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,169 DEBUG Processing 240/638 atomic regions from SNP 71754 to 72354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,173 DEBUG Processing 443/843 atomic regions from SNP 132737 to 133337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,260 DEBUG Processing 349/1007 atomic regions from SNP 104683 to 105283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,266 DEBUG Processing 437/872 atomic regions from SNP 130991 to 131591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,293 DEBUG Processing 357/465 atomic regions from SNP 106978 to 107578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,340 DEBUG Processing 312/1117 atomic regions from SNP 93576 to 94176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,427 DEBUG Processing 444/843 atomic regions from SNP 133037 to 133637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,461 DEBUG Processing 241/638 atomic regions from SNP 72054 to 72654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,519 DEBUG Processing 438/872 atomic regions from SNP 131291 to 131891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,534 DEBUG Processing 358/465 atomic regions from SNP 107278 to 107878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,539 DEBUG Processing 350/1007 atomic regions from SNP 104983 to 105583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,622 DEBUG Processing 313/1117 atomic regions from SNP 93876 to 94476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,677 DEBUG Processing 445/843 atomic regions from SNP 133337 to 133937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,763 DEBUG Processing 242/638 atomic regions from SNP 72354 to 72954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,781 DEBUG Processing 359/465 atomic regions from SNP 107578 to 108178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:40,781 DEBUG Processing 439/872 atomic regions from SNP 131591 to 132191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,821 DEBUG Processing 351/1007 atomic regions from SNP 105283 to 105883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,903 DEBUG Processing 314/1117 atomic regions from SNP 94176 to 94776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,917 DEBUG Processing 446/843 atomic regions from SNP 133637 to 134237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,029 DEBUG Processing 243/638 atomic regions from SNP 72654 to 73254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,034 DEBUG Processing 360/465 atomic regions from SNP 107878 to 108478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,038 DEBUG Processing 440/872 atomic regions from SNP 131891 to 132491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,103 DEBUG Processing 352/1007 atomic regions from SNP 105583 to 106183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,161 DEBUG Processing 447/843 atomic regions from SNP 133937 to 134537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,210 DEBUG Processing 315/1117 atomic regions from SNP 94476 to 95076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,303 DEBUG Processing 361/465 atomic regions from SNP 108178 to 108778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,303 DEBUG Processing 244/638 atomic regions from SNP 72954 to 73554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,307 DEBUG Processing 441/872 atomic regions from SNP 132191 to 132791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,391 DEBUG Processing 353/1007 atomic regions from SNP 105883 to 106483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,404 DEBUG Processing 448/843 atomic regions from SNP 134237 to 134837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,511 DEBUG Processing 316/1117 atomic regions from SNP 94776 to 95376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,560 DEBUG Processing 362/465 atomic regions from SNP 108478 to 109078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,572 DEBUG Processing 245/638 atomic regions from SNP 73254 to 73854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,584 DEBUG Processing 442/872 atomic regions from SNP 132491 to 133091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,652 DEBUG Processing 449/843 atomic regions from SNP 134537 to 135137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,677 DEBUG Processing 354/1007 atomic regions from SNP 106183 to 106783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,816 DEBUG Processing 317/1117 atomic regions from SNP 95076 to 95676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,828 DEBUG Processing 363/465 atomic regions from SNP 108778 to 109378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:41,841 DEBUG Processing 246/638 atomic regions from SNP 73554 to 74154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,852 DEBUG Processing 443/872 atomic regions from SNP 132791 to 133391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,905 DEBUG Processing 450/843 atomic regions from SNP 134837 to 135437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,963 DEBUG Processing 355/1007 atomic regions from SNP 106483 to 107083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,095 DEBUG Processing 247/638 atomic regions from SNP 73854 to 74454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,108 DEBUG Processing 364/465 atomic regions from SNP 109078 to 109678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,120 DEBUG Processing 318/1117 atomic regions from SNP 95376 to 95976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,129 DEBUG Processing 444/872 atomic regions from SNP 133091 to 133691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,167 DEBUG Processing 451/843 atomic regions from SNP 135137 to 135737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,256 DEBUG Processing 356/1007 atomic regions from SNP 106783 to 107383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,344 DEBUG Processing 248/638 atomic regions from SNP 74154 to 74754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,377 DEBUG Processing 365/465 atomic regions from SNP 109378 to 109978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,396 DEBUG Processing 445/872 atomic regions from SNP 133391 to 133991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,420 DEBUG Processing 452/843 atomic regions from SNP 135437 to 136037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,425 DEBUG Processing 319/1117 atomic regions from SNP 95676 to 96276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,538 DEBUG Processing 357/1007 atomic regions from SNP 107083 to 107683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,586 DEBUG Processing 249/638 atomic regions from SNP 74454 to 75054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,614 DEBUG Processing 366/465 atomic regions from SNP 109678 to 110278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,656 DEBUG Processing 446/872 atomic regions from SNP 133691 to 134291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,671 DEBUG Processing 453/843 atomic regions from SNP 135737 to 136337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,746 DEBUG Processing 320/1117 atomic regions from SNP 95976 to 96576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,819 DEBUG Processing 358/1007 atomic regions from SNP 107383 to 107983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,834 DEBUG Processing 250/638 atomic regions from SNP 74754 to 75354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,855 DEBUG Processing 367/465 atomic regions from SNP 109978 to 110578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:42,909 DEBUG Processing 447/872 atomic regions from SNP 133991 to 134591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,923 DEBUG Processing 454/843 atomic regions from SNP 136037 to 136637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,073 DEBUG Processing 321/1117 atomic regions from SNP 96276 to 96876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,089 DEBUG Processing 251/638 atomic regions from SNP 75054 to 75654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,098 DEBUG Processing 359/1007 atomic regions from SNP 107683 to 108283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,100 DEBUG Processing 368/465 atomic regions from SNP 110278 to 110878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,162 DEBUG Processing 448/872 atomic regions from SNP 134291 to 134891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,171 DEBUG Processing 455/843 atomic regions from SNP 136337 to 136937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,351 DEBUG Processing 369/465 atomic regions from SNP 110578 to 111178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,352 DEBUG Processing 252/638 atomic regions from SNP 75354 to 75954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,380 DEBUG Processing 360/1007 atomic regions from SNP 107983 to 108583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,396 DEBUG Processing 322/1117 atomic regions from SNP 96576 to 97176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,420 DEBUG Processing 449/872 atomic regions from SNP 134591 to 135191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,430 DEBUG Processing 456/843 atomic regions from SNP 136637 to 137237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,597 DEBUG Processing 370/465 atomic regions from SNP 110878 to 111478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,604 DEBUG Processing 253/638 atomic regions from SNP 75654 to 76254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,665 DEBUG Processing 361/1007 atomic regions from SNP 108283 to 108883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,681 DEBUG Processing 450/872 atomic regions from SNP 134891 to 135491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,685 DEBUG Processing 457/843 atomic regions from SNP 136937 to 137537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,717 DEBUG Processing 323/1117 atomic regions from SNP 96876 to 97476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,836 DEBUG Processing 371/465 atomic regions from SNP 111178 to 111778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:43,865 DEBUG Processing 254/638 atomic regions from SNP 75954 to 76554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,986 DEBUG Processing 458/843 atomic regions from SNP 137237 to 137837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,990 DEBUG Processing 362/1007 atomic regions from SNP 108583 to 109183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,004 DEBUG Processing 451/872 atomic regions from SNP 135191 to 135791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,087 DEBUG Processing 324/1117 atomic regions from SNP 97176 to 97776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,091 DEBUG Processing 372/465 atomic regions from SNP 111478 to 112078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,108 DEBUG Processing 255/638 atomic regions from SNP 76254 to 76854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,236 DEBUG Processing 459/843 atomic regions from SNP 137537 to 138137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,269 DEBUG Processing 363/1007 atomic regions from SNP 108883 to 109483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,284 DEBUG Processing 452/872 atomic regions from SNP 135491 to 136091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,344 DEBUG Processing 373/465 atomic regions from SNP 111778 to 112378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,361 DEBUG Processing 256/638 atomic regions from SNP 76554 to 77154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,409 DEBUG Processing 325/1117 atomic regions from SNP 97476 to 98076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,479 DEBUG Processing 460/843 atomic regions from SNP 137837 to 138437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,548 DEBUG Processing 364/1007 atomic regions from SNP 109183 to 109783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,563 DEBUG Processing 453/872 atomic regions from SNP 135791 to 136391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,589 DEBUG Processing 374/465 atomic regions from SNP 112078 to 112678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,613 DEBUG Processing 257/638 atomic regions from SNP 76854 to 77454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,706 DEBUG Processing 326/1117 atomic regions from SNP 97776 to 98376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,720 DEBUG Processing 461/843 atomic regions from SNP 138137 to 138737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,832 DEBUG Processing 365/1007 atomic regions from SNP 109483 to 110083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,836 DEBUG Processing 375/465 atomic regions from SNP 112378 to 112978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:44,841 DEBUG Processing 454/872 atomic regions from SNP 136091 to 136691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,866 DEBUG Processing 258/638 atomic regions from SNP 77154 to 77754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,959 DEBUG Processing 462/843 atomic regions from SNP 138437 to 139037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,992 DEBUG Processing 327/1117 atomic regions from SNP 98076 to 98676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,081 DEBUG Processing 376/465 atomic regions from SNP 112678 to 113278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,114 DEBUG Processing 366/1007 atomic regions from SNP 109783 to 110383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,115 DEBUG Processing 259/638 atomic regions from SNP 77454 to 78054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,119 DEBUG Processing 455/872 atomic regions from SNP 136391 to 136991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,201 DEBUG Processing 463/843 atomic regions from SNP 138737 to 139337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,284 DEBUG Processing 328/1117 atomic regions from SNP 98376 to 98976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,328 DEBUG Processing 377/465 atomic regions from SNP 112978 to 113578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,366 DEBUG Processing 260/638 atomic regions from SNP 77754 to 78354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,378 DEBUG Processing 456/872 atomic regions from SNP 136691 to 137291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,399 DEBUG Processing 367/1007 atomic regions from SNP 110083 to 110683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,446 DEBUG Processing 464/843 atomic regions from SNP 139037 to 139637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,587 DEBUG Processing 329/1117 atomic regions from SNP 98676 to 99276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,609 DEBUG Processing 378/465 atomic regions from SNP 113278 to 113878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,631 DEBUG Processing 261/638 atomic regions from SNP 78054 to 78654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,666 DEBUG Processing 457/872 atomic regions from SNP 136991 to 137591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,686 DEBUG Processing 368/1007 atomic regions from SNP 110383 to 110983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,699 DEBUG Processing 465/843 atomic regions from SNP 139337 to 139937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,888 DEBUG Processing 330/1117 atomic regions from SNP 98976 to 99576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,889 DEBUG Processing 379/465 atomic regions from SNP 113578 to 114178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:45,893 DEBUG Processing 262/638 atomic regions from SNP 78354 to 78954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,940 DEBUG Processing 458/872 atomic regions from SNP 137291 to 137891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,952 DEBUG Processing 466/843 atomic regions from SNP 139637 to 140237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,975 DEBUG Processing 369/1007 atomic regions from SNP 110683 to 111283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,138 DEBUG Processing 380/465 atomic regions from SNP 113878 to 114478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,153 DEBUG Processing 263/638 atomic regions from SNP 78654 to 79254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,186 DEBUG Processing 331/1117 atomic regions from SNP 99276 to 99876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,198 DEBUG Processing 467/843 atomic regions from SNP 139937 to 140537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,218 DEBUG Processing 459/872 atomic regions from SNP 137591 to 138191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,260 DEBUG Processing 370/1007 atomic regions from SNP 110983 to 111583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,383 DEBUG Processing 381/465 atomic regions from SNP 114178 to 114778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,413 DEBUG Processing 264/638 atomic regions from SNP 78954 to 79554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,435 DEBUG Processing 468/843 atomic regions from SNP 140237 to 140837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,471 DEBUG Processing 460/872 atomic regions from SNP 137891 to 138491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,477 DEBUG Processing 332/1117 atomic regions from SNP 99576 to 100176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,550 DEBUG Processing 371/1007 atomic regions from SNP 111283 to 111883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,633 DEBUG Processing 382/465 atomic regions from SNP 114478 to 115078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,671 DEBUG Processing 265/638 atomic regions from SNP 79254 to 79854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,675 DEBUG Processing 469/843 atomic regions from SNP 140537 to 141137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,716 DEBUG Processing 461/872 atomic regions from SNP 138191 to 138791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,768 DEBUG Processing 333/1117 atomic regions from SNP 99876 to 100476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,838 DEBUG Processing 372/1007 atomic regions from SNP 111583 to 112183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,885 DEBUG Processing 383/465 atomic regions from SNP 114778 to 115378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:46,920 DEBUG Processing 470/843 atomic regions from SNP 140837 to 141437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,930 DEBUG Processing 266/638 atomic regions from SNP 79554 to 80154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,960 DEBUG Processing 462/872 atomic regions from SNP 138491 to 139091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,051 DEBUG Processing 334/1117 atomic regions from SNP 100176 to 100776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,135 DEBUG Processing 373/1007 atomic regions from SNP 111883 to 112483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,153 DEBUG Processing 384/465 atomic regions from SNP 115078 to 115678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,193 DEBUG Processing 471/843 atomic regions from SNP 141137 to 141737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,227 DEBUG Processing 463/872 atomic regions from SNP 138791 to 139391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,228 DEBUG Processing 267/638 atomic regions from SNP 79854 to 80454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,341 DEBUG Processing 335/1117 atomic regions from SNP 100476 to 101076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,438 DEBUG Processing 385/465 atomic regions from SNP 115378 to 115978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,475 DEBUG Processing 374/1007 atomic regions from SNP 112183 to 112783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,496 DEBUG Processing 472/843 atomic regions from SNP 141437 to 142037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,534 DEBUG Processing 268/638 atomic regions from SNP 80154 to 80754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,535 DEBUG Processing 464/872 atomic regions from SNP 139091 to 139691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,668 DEBUG Processing 336/1117 atomic regions from SNP 100776 to 101376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,715 DEBUG Processing 386/465 atomic regions from SNP 115678 to 116278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:47,818 DEBUG Processing 375/1007 atomic regions from SNP 112483 to 113083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,823 DEBUG Processing 473/843 atomic regions from SNP 141737 to 142337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,888 DEBUG Processing 269/638 atomic regions from SNP 80454 to 81054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,920 DEBUG Processing 465/872 atomic regions from SNP 139391 to 139991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,993 DEBUG Processing 387/465 atomic regions from SNP 115978 to 116578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,008 DEBUG Processing 337/1117 atomic regions from SNP 101076 to 101676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,109 DEBUG Processing 474/843 atomic regions from SNP 142037 to 142637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,148 DEBUG Processing 376/1007 atomic regions from SNP 112783 to 113383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,173 DEBUG Processing 270/638 atomic regions from SNP 80754 to 81354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,251 DEBUG Processing 466/872 atomic regions from SNP 139691 to 140291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,259 DEBUG Processing 388/465 atomic regions from SNP 116278 to 116878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,318 DEBUG Processing 338/1117 atomic regions from SNP 101376 to 101976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,348 DEBUG Processing 475/843 atomic regions from SNP 142337 to 142937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,428 DEBUG Processing 377/1007 atomic regions from SNP 113083 to 113683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,436 DEBUG Processing 271/638 atomic regions from SNP 81054 to 81654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,509 DEBUG Processing 389/465 atomic regions from SNP 116578 to 117178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,554 DEBUG Processing 467/872 atomic regions from SNP 139991 to 140591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,605 DEBUG Processing 476/843 atomic regions from SNP 142637 to 143237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,609 DEBUG Processing 339/1117 atomic regions from SNP 101676 to 102276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,682 DEBUG Processing 272/638 atomic regions from SNP 81354 to 81954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,715 DEBUG Processing 378/1007 atomic regions from SNP 113383 to 113983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,758 DEBUG Processing 390/465 atomic regions from SNP 116878 to 117478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:48,866 DEBUG Processing 477/843 atomic regions from SNP 142937 to 143537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,873 DEBUG Processing 468/872 atomic regions from SNP 140291 to 140891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,916 DEBUG Processing 340/1117 atomic regions from SNP 101976 to 102576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,957 DEBUG Processing 273/638 atomic regions from SNP 81654 to 82254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,012 DEBUG Processing 391/465 atomic regions from SNP 117178 to 117778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:49,016 DEBUG Processing 379/1007 atomic regions from SNP 113683 to 114283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,152 DEBUG Processing 478/843 atomic regions from SNP 143237 to 143837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,195 DEBUG Processing 469/872 atomic regions from SNP 140591 to 141191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,255 DEBUG Processing 274/638 atomic regions from SNP 81954 to 82554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,266 DEBUG Processing 341/1117 atomic regions from SNP 102276 to 102876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,282 DEBUG Processing 392/465 atomic regions from SNP 117478 to 118078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:49,323 DEBUG Processing 380/1007 atomic regions from SNP 113983 to 114583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,414 DEBUG Processing 479/843 atomic regions from SNP 143537 to 144137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,513 DEBUG Processing 470/872 atomic regions from SNP 140891 to 141491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,556 DEBUG Processing 275/638 atomic regions from SNP 82254 to 82854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,616 DEBUG Processing 393/465 atomic regions from SNP 117778 to 118378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:49,666 DEBUG Processing 381/1007 atomic regions from SNP 114283 to 114883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,671 DEBUG Processing 342/1117 atomic regions from SNP 102576 to 103176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,723 DEBUG Processing 480/843 atomic regions from SNP 143837 to 144437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,848 DEBUG Processing 471/872 atomic regions from SNP 141191 to 141791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,883 DEBUG Processing 276/638 atomic regions from SNP 82554 to 83154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,954 DEBUG Processing 394/465 atomic regions from SNP 118078 to 118678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,024 DEBUG Processing 382/1007 atomic regions from SNP 114583 to 115183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,062 DEBUG Processing 481/843 atomic regions from SNP 144137 to 144737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,074 DEBUG Processing 343/1117 atomic regions from SNP 102876 to 103476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,170 DEBUG Processing 277/638 atomic regions from SNP 82854 to 83454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,178 DEBUG Processing 472/872 atomic regions from SNP 141491 to 142091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,266 DEBUG Processing 395/465 atomic regions from SNP 118378 to 118978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,400 DEBUG Processing 383/1007 atomic regions from SNP 114883 to 115483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,444 DEBUG Processing 482/843 atomic regions from SNP 144437 to 145037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,499 DEBUG Processing 344/1117 atomic regions from SNP 103176 to 103776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,523 DEBUG Processing 278/638 atomic regions from SNP 83154 to 83754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,566 DEBUG Processing 473/872 atomic regions from SNP 141791 to 142391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,595 DEBUG Processing 396/465 atomic regions from SNP 118678 to 119278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,810 DEBUG Processing 483/843 atomic regions from SNP 144737 to 145337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,818 DEBUG Processing 384/1007 atomic regions from SNP 115183 to 115783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,921 DEBUG Processing 345/1117 atomic regions from SNP 103476 to 104076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,921 DEBUG Processing 279/638 atomic regions from SNP 83454 to 84054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,973 DEBUG Processing 397/465 atomic regions from SNP 118978 to 119578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:50,995 DEBUG Processing 474/872 atomic regions from SNP 142091 to 142691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,109 DEBUG Processing 484/843 atomic regions from SNP 145037 to 145637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,143 DEBUG Processing 385/1007 atomic regions from SNP 115483 to 116083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,275 DEBUG Processing 280/638 atomic regions from SNP 83754 to 84354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,312 DEBUG Processing 398/465 atomic regions from SNP 119278 to 119878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:51,312 DEBUG Processing 346/1117 atomic regions from SNP 103776 to 104376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,354 DEBUG Processing 475/872 atomic regions from SNP 142391 to 142991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,409 DEBUG Processing 485/843 atomic regions from SNP 145337 to 145937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,460 DEBUG Processing 386/1007 atomic regions from SNP 115783 to 116383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,576 DEBUG Processing 281/638 atomic regions from SNP 84054 to 84654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,630 DEBUG Processing 399/465 atomic regions from SNP 119578 to 120178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:51,673 DEBUG Processing 347/1117 atomic regions from SNP 104076 to 104676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,708 DEBUG Processing 476/872 atomic regions from SNP 142691 to 143291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,747 DEBUG Processing 486/843 atomic regions from SNP 145637 to 146237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,806 DEBUG Processing 387/1007 atomic regions from SNP 116083 to 116683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,846 DEBUG Processing 282/638 atomic regions from SNP 84354 to 84954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,879 DEBUG Processing 400/465 atomic regions from SNP 119878 to 120478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:51,988 DEBUG Processing 348/1117 atomic regions from SNP 104376 to 104976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,049 DEBUG Processing 487/843 atomic regions from SNP 145937 to 146537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,051 DEBUG Processing 477/872 atomic regions from SNP 142991 to 143591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,149 DEBUG Processing 388/1007 atomic regions from SNP 116383 to 116983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,168 DEBUG Processing 283/638 atomic regions from SNP 84654 to 85254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,175 DEBUG Processing 401/465 atomic regions from SNP 120178 to 120778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,290 DEBUG Processing 349/1117 atomic regions from SNP 104676 to 105276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,304 DEBUG Processing 488/843 atomic regions from SNP 146237 to 146837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,334 DEBUG Processing 478/872 atomic regions from SNP 143291 to 143891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,434 DEBUG Processing 402/465 atomic regions from SNP 120478 to 121078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,438 DEBUG Processing 284/638 atomic regions from SNP 84954 to 85554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,467 DEBUG Processing 389/1007 atomic regions from SNP 116683 to 117283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,570 DEBUG Processing 489/843 atomic regions from SNP 146537 to 147137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,621 DEBUG Processing 350/1117 atomic regions from SNP 104976 to 105576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,626 DEBUG Processing 479/872 atomic regions from SNP 143591 to 144191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,707 DEBUG Processing 403/465 atomic regions from SNP 120778 to 121378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:52,718 DEBUG Processing 285/638 atomic regions from SNP 85254 to 85854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,800 DEBUG Processing 390/1007 atomic regions from SNP 116983 to 117583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,877 DEBUG Processing 490/843 atomic regions from SNP 146837 to 147437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,969 DEBUG Processing 351/1117 atomic regions from SNP 105276 to 105876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,003 DEBUG Processing 480/872 atomic regions from SNP 143891 to 144491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,038 DEBUG Processing 286/638 atomic regions from SNP 85554 to 86154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,043 DEBUG Processing 404/465 atomic regions from SNP 121078 to 121678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,201 DEBUG Processing 391/1007 atomic regions from SNP 117283 to 117883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,230 DEBUG Processing 491/843 atomic regions from SNP 147137 to 147737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,370 DEBUG Processing 287/638 atomic regions from SNP 85854 to 86454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,383 DEBUG Processing 405/465 atomic regions from SNP 121378 to 121978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,385 DEBUG Processing 352/1117 atomic regions from SNP 105576 to 106176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,389 DEBUG Processing 481/872 atomic regions from SNP 144191 to 144791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,604 DEBUG Processing 492/843 atomic regions from SNP 147437 to 148037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,629 DEBUG Processing 392/1007 atomic regions from SNP 117583 to 118183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,723 DEBUG Processing 288/638 atomic regions from SNP 86154 to 86754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,741 DEBUG Processing 406/465 atomic regions from SNP 121678 to 122278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:53,783 DEBUG Processing 482/872 atomic regions from SNP 144491 to 145091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,853 DEBUG Processing 353/1117 atomic regions from SNP 105876 to 106476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,879 DEBUG Processing 493/843 atomic regions from SNP 147737 to 148337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,926 DEBUG Processing 393/1007 atomic regions from SNP 117883 to 118483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,983 DEBUG Processing 289/638 atomic regions from SNP 86454 to 87054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,998 DEBUG Processing 407/465 atomic regions from SNP 121978 to 122578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,079 DEBUG Processing 483/872 atomic regions from SNP 144791 to 145391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,259 DEBUG Processing 494/843 atomic regions from SNP 148037 to 148637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,317 DEBUG Processing 354/1117 atomic regions from SNP 106176 to 106776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,327 DEBUG Processing 394/1007 atomic regions from SNP 118183 to 118783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,336 DEBUG Processing 408/465 atomic regions from SNP 122278 to 122878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,339 DEBUG Processing 290/638 atomic regions from SNP 86754 to 87354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,369 DEBUG Processing 484/872 atomic regions from SNP 145091 to 145691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,628 DEBUG Processing 495/843 atomic regions from SNP 148337 to 148937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,726 DEBUG Processing 409/465 atomic regions from SNP 122578 to 123178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:54,736 DEBUG Processing 291/638 atomic regions from SNP 87054 to 87654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,738 DEBUG Processing 485/872 atomic regions from SNP 145391 to 145991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,746 DEBUG Processing 355/1117 atomic regions from SNP 106476 to 107076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,761 DEBUG Processing 395/1007 atomic regions from SNP 118483 to 119083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,922 DEBUG Processing 496/843 atomic regions from SNP 148637 to 149237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,985 DEBUG Processing 410/465 atomic regions from SNP 122878 to 123478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,003 DEBUG Processing 292/638 atomic regions from SNP 87354 to 87954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,015 DEBUG Processing 486/872 atomic regions from SNP 145691 to 146291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,069 DEBUG Processing 396/1007 atomic regions from SNP 118783 to 119383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,080 DEBUG Processing 356/1117 atomic regions from SNP 106776 to 107376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,198 DEBUG Processing 497/843 atomic regions from SNP 148937 to 149537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,235 DEBUG Processing 411/465 atomic regions from SNP 123178 to 123778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,259 DEBUG Processing 293/638 atomic regions from SNP 87654 to 88254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,278 DEBUG Processing 487/872 atomic regions from SNP 145991 to 146591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,369 DEBUG Processing 397/1007 atomic regions from SNP 119083 to 119683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,384 DEBUG Processing 357/1117 atomic regions from SNP 107076 to 107676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,450 DEBUG Processing 498/843 atomic regions from SNP 149237 to 149837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,484 DEBUG Processing 412/465 atomic regions from SNP 123478 to 124078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,522 DEBUG Processing 294/638 atomic regions from SNP 87954 to 88554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,547 DEBUG Processing 488/872 atomic regions from SNP 146291 to 146891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,663 DEBUG Processing 398/1007 atomic regions from SNP 119383 to 119983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,674 DEBUG Processing 358/1117 atomic regions from SNP 107376 to 107976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,706 DEBUG Processing 499/843 atomic regions from SNP 149537 to 150137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,734 DEBUG Processing 413/465 atomic regions from SNP 123778 to 124378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,775 DEBUG Processing 295/638 atomic regions from SNP 88254 to 88854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,801 DEBUG Processing 489/872 atomic regions from SNP 146591 to 147191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,963 DEBUG Processing 500/843 atomic regions from SNP 149837 to 150437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,964 DEBUG Processing 359/1117 atomic regions from SNP 107676 to 108276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,988 DEBUG Processing 414/465 atomic regions from SNP 124078 to 124678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:55,989 DEBUG Processing 399/1007 atomic regions from SNP 119683 to 120283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,035 DEBUG Processing 296/638 atomic regions from SNP 88554 to 89154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,055 DEBUG Processing 490/872 atomic regions from SNP 146891 to 147491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,224 DEBUG Processing 501/843 atomic regions from SNP 150137 to 150737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,243 DEBUG Processing 415/465 atomic regions from SNP 124378 to 124978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,261 DEBUG Processing 360/1117 atomic regions from SNP 107976 to 108576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,300 DEBUG Processing 297/638 atomic regions from SNP 88854 to 89454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,303 DEBUG Processing 400/1007 atomic regions from SNP 119983 to 120583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,318 DEBUG Processing 491/872 atomic regions from SNP 147191 to 147791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,480 DEBUG Processing 502/843 atomic regions from SNP 150437 to 151037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,499 DEBUG Processing 416/465 atomic regions from SNP 124678 to 125278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,568 DEBUG Processing 298/638 atomic regions from SNP 89154 to 89754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,570 DEBUG Processing 361/1117 atomic regions from SNP 108276 to 108876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,582 DEBUG Processing 492/872 atomic regions from SNP 147491 to 148091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,596 DEBUG Processing 401/1007 atomic regions from SNP 120283 to 120883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,731 DEBUG Processing 503/843 atomic regions from SNP 150737 to 151337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,745 DEBUG Processing 417/465 atomic regions from SNP 124978 to 125578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:56,833 DEBUG Processing 299/638 atomic regions from SNP 89454 to 90054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,849 DEBUG Processing 493/872 atomic regions from SNP 147791 to 148391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,873 DEBUG Processing 362/1117 atomic regions from SNP 108576 to 109176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,889 DEBUG Processing 402/1007 atomic regions from SNP 120583 to 121183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,984 DEBUG Processing 504/843 atomic regions from SNP 151037 to 151637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,988 DEBUG Processing 418/465 atomic regions from SNP 125278 to 125878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,088 DEBUG Processing 300/638 atomic regions from SNP 89754 to 90354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,109 DEBUG Processing 494/872 atomic regions from SNP 148091 to 148691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,164 DEBUG Processing 363/1117 atomic regions from SNP 108876 to 109476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,181 DEBUG Processing 403/1007 atomic regions from SNP 120883 to 121483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,230 DEBUG Processing 419/465 atomic regions from SNP 125578 to 126178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,247 DEBUG Processing 505/843 atomic regions from SNP 151337 to 151937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,345 DEBUG Processing 301/638 atomic regions from SNP 90054 to 90654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,365 DEBUG Processing 495/872 atomic regions from SNP 148391 to 148991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,452 DEBUG Processing 364/1117 atomic regions from SNP 109176 to 109776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,475 DEBUG Processing 420/465 atomic regions from SNP 125878 to 126478 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,475 DEBUG Processing 404/1007 atomic regions from SNP 121183 to 121783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,509 DEBUG Processing 506/843 atomic regions from SNP 151637 to 152237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,613 DEBUG Processing 302/638 atomic regions from SNP 90354 to 90954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,621 DEBUG Processing 496/872 atomic regions from SNP 148691 to 149291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,723 DEBUG Processing 421/465 atomic regions from SNP 126178 to 126778 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:57,748 DEBUG Processing 365/1117 atomic regions from SNP 109476 to 110076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,771 DEBUG Processing 507/843 atomic regions from SNP 151937 to 152537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,777 DEBUG Processing 405/1007 atomic regions from SNP 121483 to 122083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,865 DEBUG Processing 303/638 atomic regions from SNP 90654 to 91254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,881 DEBUG Processing 497/872 atomic regions from SNP 148991 to 149591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,968 DEBUG Processing 422/465 atomic regions from SNP 126478 to 127078 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,032 DEBUG Processing 508/843 atomic regions from SNP 152237 to 152837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,072 DEBUG Processing 366/1117 atomic regions from SNP 109776 to 110376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,076 DEBUG Processing 406/1007 atomic regions from SNP 121783 to 122383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,117 DEBUG Processing 304/638 atomic regions from SNP 90954 to 91554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,149 DEBUG Processing 498/872 atomic regions from SNP 149291 to 149891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,209 DEBUG Processing 423/465 atomic regions from SNP 126778 to 127378 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,286 DEBUG Processing 509/843 atomic regions from SNP 152537 to 153137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,369 DEBUG Processing 367/1117 atomic regions from SNP 110076 to 110676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,370 DEBUG Processing 305/638 atomic regions from SNP 91254 to 91854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,373 DEBUG Processing 407/1007 atomic regions from SNP 122083 to 122683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,411 DEBUG Processing 499/872 atomic regions from SNP 149591 to 150191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,459 DEBUG Processing 424/465 atomic regions from SNP 127078 to 127678 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,544 DEBUG Processing 510/843 atomic regions from SNP 152837 to 153437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,626 DEBUG Processing 306/638 atomic regions from SNP 91554 to 92154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,665 DEBUG Processing 368/1117 atomic regions from SNP 110376 to 110976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,671 DEBUG Processing 408/1007 atomic regions from SNP 122383 to 122983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,674 DEBUG Processing 500/872 atomic regions from SNP 149891 to 150491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,700 DEBUG Processing 425/465 atomic regions from SNP 127378 to 127978 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,796 DEBUG Processing 511/843 atomic regions from SNP 153137 to 153737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,877 DEBUG Processing 307/638 atomic regions from SNP 91854 to 92454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,944 DEBUG Processing 426/465 atomic regions from SNP 127678 to 128278 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:58,953 DEBUG Processing 369/1117 atomic regions from SNP 110676 to 111276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,957 DEBUG Processing 501/872 atomic regions from SNP 150191 to 150791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,975 DEBUG Processing 409/1007 atomic regions from SNP 122683 to 123283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,060 DEBUG Processing 512/843 atomic regions from SNP 153437 to 154037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,124 DEBUG Processing 308/638 atomic regions from SNP 92154 to 92754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,187 DEBUG Processing 427/465 atomic regions from SNP 127978 to 128578 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:59,244 DEBUG Processing 370/1117 atomic regions from SNP 110976 to 111576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,244 DEBUG Processing 502/872 atomic regions from SNP 150491 to 151091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,268 DEBUG Processing 410/1007 atomic regions from SNP 122983 to 123583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,319 DEBUG Processing 513/843 atomic regions from SNP 153737 to 154337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,369 DEBUG Processing 309/638 atomic regions from SNP 92454 to 93054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,436 DEBUG Processing 428/465 atomic regions from SNP 128278 to 128878 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:59,535 DEBUG Processing 371/1117 atomic regions from SNP 111276 to 111876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,538 DEBUG Processing 503/872 atomic regions from SNP 150791 to 151391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,567 DEBUG Processing 411/1007 atomic regions from SNP 123283 to 123883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,580 DEBUG Processing 514/843 atomic regions from SNP 154037 to 154637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,628 DEBUG Processing 310/638 atomic regions from SNP 92754 to 93354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,675 DEBUG Processing 429/465 atomic regions from SNP 128578 to 129178 for chrX (subchromosome 3 of 5). 2025-01-31 09:44:59,828 DEBUG Processing 372/1117 atomic regions from SNP 111576 to 112176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,835 DEBUG Processing 504/872 atomic regions from SNP 151091 to 151691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,842 DEBUG Processing 515/843 atomic regions from SNP 154337 to 154937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,881 DEBUG Processing 311/638 atomic regions from SNP 93054 to 93654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,887 DEBUG Processing 412/1007 atomic regions from SNP 123583 to 124183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,921 DEBUG Processing 430/465 atomic regions from SNP 128878 to 129478 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,103 DEBUG Processing 516/843 atomic regions from SNP 154637 to 155237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,116 DEBUG Processing 373/1117 atomic regions from SNP 111876 to 112476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,134 DEBUG Processing 312/638 atomic regions from SNP 93354 to 93954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,135 DEBUG Processing 505/872 atomic regions from SNP 151391 to 151991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,164 DEBUG Processing 431/465 atomic regions from SNP 129178 to 129778 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,203 DEBUG Processing 413/1007 atomic regions from SNP 123883 to 124483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,363 DEBUG Processing 517/843 atomic regions from SNP 154937 to 155537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,387 DEBUG Processing 313/638 atomic regions from SNP 93654 to 94254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,408 DEBUG Processing 374/1117 atomic regions from SNP 112176 to 112776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,413 DEBUG Processing 432/465 atomic regions from SNP 129478 to 130078 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,436 DEBUG Processing 506/872 atomic regions from SNP 151691 to 152291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,499 DEBUG Processing 414/1007 atomic regions from SNP 124183 to 124783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,619 DEBUG Processing 518/843 atomic regions from SNP 155237 to 155837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,640 DEBUG Processing 314/638 atomic regions from SNP 93954 to 94554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,661 DEBUG Processing 433/465 atomic regions from SNP 129778 to 130378 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,701 DEBUG Processing 375/1117 atomic regions from SNP 112476 to 113076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,725 DEBUG Processing 507/872 atomic regions from SNP 151991 to 152591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,797 DEBUG Processing 415/1007 atomic regions from SNP 124483 to 125083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,878 DEBUG Processing 519/843 atomic regions from SNP 155537 to 156137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,888 DEBUG Processing 315/638 atomic regions from SNP 94254 to 94854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,907 DEBUG Processing 434/465 atomic regions from SNP 130078 to 130678 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:00,997 DEBUG Processing 376/1117 atomic regions from SNP 112776 to 113376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,030 DEBUG Processing 508/872 atomic regions from SNP 152291 to 152891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,105 DEBUG Processing 416/1007 atomic regions from SNP 124783 to 125383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,146 DEBUG Processing 316/638 atomic regions from SNP 94554 to 95154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,156 DEBUG Processing 520/843 atomic regions from SNP 155837 to 156437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,170 DEBUG Processing 435/465 atomic regions from SNP 130378 to 130978 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,289 DEBUG Processing 377/1117 atomic regions from SNP 113076 to 113676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,324 DEBUG Processing 509/872 atomic regions from SNP 152591 to 153191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,407 DEBUG Processing 317/638 atomic regions from SNP 94854 to 95454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,409 DEBUG Processing 417/1007 atomic regions from SNP 125083 to 125683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,422 DEBUG Processing 436/465 atomic regions from SNP 130678 to 131278 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,425 DEBUG Processing 521/843 atomic regions from SNP 156137 to 156737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,574 DEBUG Processing 378/1117 atomic regions from SNP 113376 to 113976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,618 DEBUG Processing 510/872 atomic regions from SNP 152891 to 153491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,673 DEBUG Processing 318/638 atomic regions from SNP 95154 to 95754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,678 DEBUG Processing 437/465 atomic regions from SNP 130978 to 131578 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,694 DEBUG Processing 522/843 atomic regions from SNP 156437 to 157037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,716 DEBUG Processing 418/1007 atomic regions from SNP 125383 to 125983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,857 DEBUG Processing 379/1117 atomic regions from SNP 113676 to 114276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,916 DEBUG Processing 511/872 atomic regions from SNP 153191 to 153791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,937 DEBUG Processing 438/465 atomic regions from SNP 131278 to 131878 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:01,940 DEBUG Processing 319/638 atomic regions from SNP 95454 to 96054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,962 DEBUG Processing 523/843 atomic regions from SNP 156737 to 157337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,023 DEBUG Processing 419/1007 atomic regions from SNP 125683 to 126283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,145 DEBUG Processing 380/1117 atomic regions from SNP 113976 to 114576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,193 DEBUG Processing 439/465 atomic regions from SNP 131578 to 132178 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:02,197 DEBUG Processing 320/638 atomic regions from SNP 95754 to 96354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,217 DEBUG Processing 512/872 atomic regions from SNP 153491 to 154091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,230 DEBUG Processing 524/843 atomic regions from SNP 157037 to 157637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,325 DEBUG Processing 420/1007 atomic regions from SNP 125983 to 126583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,435 DEBUG Processing 381/1117 atomic regions from SNP 114276 to 114876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,439 DEBUG Processing 440/465 atomic regions from SNP 131878 to 132478 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:02,452 DEBUG Processing 321/638 atomic regions from SNP 96054 to 96654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,492 DEBUG Processing 525/843 atomic regions from SNP 157337 to 157937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,522 DEBUG Processing 513/872 atomic regions from SNP 153791 to 154391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,624 DEBUG Processing 421/1007 atomic regions from SNP 126283 to 126883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,685 DEBUG Processing 441/465 atomic regions from SNP 132178 to 132778 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:02,721 DEBUG Processing 322/638 atomic regions from SNP 96354 to 96954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,731 DEBUG Processing 382/1117 atomic regions from SNP 114576 to 115176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,750 DEBUG Processing 526/843 atomic regions from SNP 157637 to 158237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,828 DEBUG Processing 514/872 atomic regions from SNP 154091 to 154691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,924 DEBUG Processing 422/1007 atomic regions from SNP 126583 to 127183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,938 DEBUG Processing 442/465 atomic regions from SNP 132478 to 133078 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,017 DEBUG Processing 323/638 atomic regions from SNP 96654 to 97254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,030 DEBUG Processing 527/843 atomic regions from SNP 157937 to 158537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,040 DEBUG Processing 383/1117 atomic regions from SNP 114876 to 115476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,185 DEBUG Processing 515/872 atomic regions from SNP 154391 to 154991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,258 DEBUG Processing 443/465 atomic regions from SNP 132778 to 133378 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,296 DEBUG Processing 423/1007 atomic regions from SNP 126883 to 127483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,327 DEBUG Processing 528/843 atomic regions from SNP 158237 to 158837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,333 DEBUG Processing 324/638 atomic regions from SNP 96954 to 97554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,371 DEBUG Processing 384/1117 atomic regions from SNP 115176 to 115776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,542 DEBUG Processing 516/872 atomic regions from SNP 154691 to 155291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,619 DEBUG Processing 444/465 atomic regions from SNP 133078 to 133678 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:03,714 DEBUG Processing 529/843 atomic regions from SNP 158537 to 159137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,718 DEBUG Processing 325/638 atomic regions from SNP 97254 to 97854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,722 DEBUG Processing 424/1007 atomic regions from SNP 127183 to 127783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,763 DEBUG Processing 385/1117 atomic regions from SNP 115476 to 116076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,900 DEBUG Processing 517/872 atomic regions from SNP 154991 to 155591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,934 DEBUG Processing 445/465 atomic regions from SNP 133378 to 133978 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,132 DEBUG Processing 326/638 atomic regions from SNP 97554 to 98154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,149 DEBUG Processing 530/843 atomic regions from SNP 158837 to 159437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,181 DEBUG Processing 425/1007 atomic regions from SNP 127483 to 128083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,194 DEBUG Processing 386/1117 atomic regions from SNP 115776 to 116376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,275 DEBUG Processing 518/872 atomic regions from SNP 155291 to 155891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,316 DEBUG Processing 446/465 atomic regions from SNP 133678 to 134278 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,531 DEBUG Processing 327/638 atomic regions from SNP 97854 to 98454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,557 DEBUG Processing 531/843 atomic regions from SNP 159137 to 159737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,636 DEBUG Processing 426/1007 atomic regions from SNP 127783 to 128383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,645 DEBUG Processing 387/1117 atomic regions from SNP 116076 to 116676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,686 DEBUG Processing 519/872 atomic regions from SNP 155591 to 156191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,704 DEBUG Processing 447/465 atomic regions from SNP 133978 to 134578 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:04,862 DEBUG Processing 328/638 atomic regions from SNP 98154 to 98754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,950 DEBUG Processing 532/843 atomic regions from SNP 159437 to 160037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,077 DEBUG Processing 427/1007 atomic regions from SNP 128083 to 128683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,082 DEBUG Processing 388/1117 atomic regions from SNP 116376 to 116976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,102 DEBUG Processing 448/465 atomic regions from SNP 134278 to 134878 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,115 DEBUG Processing 520/872 atomic regions from SNP 155891 to 156491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,224 DEBUG Processing 329/638 atomic regions from SNP 98454 to 99054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,308 DEBUG Processing 533/843 atomic regions from SNP 159737 to 160337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,396 DEBUG Processing 449/465 atomic regions from SNP 134578 to 135178 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,428 DEBUG Processing 428/1007 atomic regions from SNP 128383 to 128983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,429 DEBUG Processing 389/1117 atomic regions from SNP 116676 to 117276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,451 DEBUG Processing 521/872 atomic regions from SNP 156191 to 156791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,506 DEBUG Processing 330/638 atomic regions from SNP 98754 to 99354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,584 DEBUG Processing 534/843 atomic regions from SNP 160037 to 160637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,644 DEBUG Processing 450/465 atomic regions from SNP 134878 to 135478 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:05,734 DEBUG Processing 429/1007 atomic regions from SNP 128683 to 129283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,736 DEBUG Processing 390/1117 atomic regions from SNP 116976 to 117576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,747 DEBUG Processing 522/872 atomic regions from SNP 156491 to 157091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,773 DEBUG Processing 331/638 atomic regions from SNP 99054 to 99654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,902 DEBUG Processing 535/843 atomic regions from SNP 160337 to 160937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,918 DEBUG Processing 451/465 atomic regions from SNP 135178 to 135778 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,063 DEBUG Processing 332/638 atomic regions from SNP 99354 to 99954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,065 DEBUG Processing 430/1007 atomic regions from SNP 128983 to 129583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,065 DEBUG Processing 391/1117 atomic regions from SNP 117276 to 117876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,067 DEBUG Processing 523/872 atomic regions from SNP 156791 to 157391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,222 DEBUG Processing 536/843 atomic regions from SNP 160637 to 161237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,232 DEBUG Processing 452/465 atomic regions from SNP 135478 to 136078 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,408 DEBUG Processing 333/638 atomic regions from SNP 99654 to 100254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,422 DEBUG Processing 524/872 atomic regions from SNP 157091 to 157691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,446 DEBUG Processing 431/1007 atomic regions from SNP 129283 to 129883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,447 DEBUG Processing 392/1117 atomic regions from SNP 117576 to 118176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,561 DEBUG Processing 537/843 atomic regions from SNP 160937 to 161537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,564 DEBUG Processing 453/465 atomic regions from SNP 135778 to 136378 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,776 DEBUG Processing 334/638 atomic regions from SNP 99954 to 100554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,781 DEBUG Processing 525/872 atomic regions from SNP 157391 to 157991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,832 DEBUG Processing 393/1117 atomic regions from SNP 117876 to 118476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,840 DEBUG Processing 432/1007 atomic regions from SNP 129583 to 130183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,890 DEBUG Processing 454/465 atomic regions from SNP 136078 to 136678 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:06,908 DEBUG Processing 538/843 atomic regions from SNP 161237 to 161837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,064 DEBUG Processing 335/638 atomic regions from SNP 100254 to 100854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,070 DEBUG Processing 526/872 atomic regions from SNP 157691 to 158291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,259 DEBUG Processing 433/1007 atomic regions from SNP 129883 to 130483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,262 DEBUG Processing 394/1117 atomic regions from SNP 118176 to 118776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,278 DEBUG Processing 455/465 atomic regions from SNP 136378 to 136978 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:07,291 DEBUG Processing 539/843 atomic regions from SNP 161537 to 162137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,369 DEBUG Processing 336/638 atomic regions from SNP 100554 to 101154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,388 DEBUG Processing 527/872 atomic regions from SNP 157991 to 158591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,667 DEBUG Processing 456/465 atomic regions from SNP 136678 to 137278 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:07,691 DEBUG Processing 540/843 atomic regions from SNP 161837 to 162437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,698 DEBUG Processing 395/1117 atomic regions from SNP 118476 to 119076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,715 DEBUG Processing 434/1007 atomic regions from SNP 130183 to 130783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,718 DEBUG Processing 337/638 atomic regions from SNP 100854 to 101454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,738 DEBUG Processing 528/872 atomic regions from SNP 158291 to 158891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,912 DEBUG Processing 457/465 atomic regions from SNP 136978 to 137578 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:07,962 DEBUG Processing 541/843 atomic regions from SNP 162137 to 162737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,992 DEBUG Processing 338/638 atomic regions from SNP 101154 to 101754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,008 DEBUG Processing 396/1117 atomic regions from SNP 118776 to 119376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,021 DEBUG Processing 529/872 atomic regions from SNP 158591 to 159191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,035 DEBUG Processing 435/1007 atomic regions from SNP 130483 to 131083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,143 DEBUG Processing 458/465 atomic regions from SNP 137278 to 137878 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,207 DEBUG Processing 542/843 atomic regions from SNP 162437 to 163037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,240 DEBUG Processing 339/638 atomic regions from SNP 101454 to 102054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,282 DEBUG Processing 530/872 atomic regions from SNP 158891 to 159491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,313 DEBUG Processing 397/1117 atomic regions from SNP 119076 to 119676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,326 DEBUG Processing 436/1007 atomic regions from SNP 130783 to 131383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,377 DEBUG Processing 459/465 atomic regions from SNP 137578 to 138178 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,445 DEBUG Processing 543/843 atomic regions from SNP 162737 to 163337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,481 DEBUG Processing 340/638 atomic regions from SNP 101754 to 102354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,537 DEBUG Processing 531/872 atomic regions from SNP 159191 to 159791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,622 DEBUG Processing 437/1007 atomic regions from SNP 131083 to 131683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,630 DEBUG Processing 460/465 atomic regions from SNP 137878 to 138478 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,651 DEBUG Processing 398/1117 atomic regions from SNP 119376 to 119976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,690 DEBUG Processing 544/843 atomic regions from SNP 163037 to 163637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,720 DEBUG Processing 341/638 atomic regions from SNP 102054 to 102654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,785 DEBUG Processing 532/872 atomic regions from SNP 159491 to 160091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,889 DEBUG Processing 461/465 atomic regions from SNP 138178 to 138778 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:08,928 DEBUG Processing 438/1007 atomic regions from SNP 131383 to 131983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,957 DEBUG Processing 545/843 atomic regions from SNP 163337 to 163937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,965 DEBUG Processing 399/1117 atomic regions from SNP 119676 to 120276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,983 DEBUG Processing 342/638 atomic regions from SNP 102354 to 102954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,042 DEBUG Processing 533/872 atomic regions from SNP 159791 to 160391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,142 DEBUG Processing 462/465 atomic regions from SNP 138478 to 139078 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,224 DEBUG Processing 546/843 atomic regions from SNP 163637 to 164237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,233 DEBUG Processing 439/1007 atomic regions from SNP 131683 to 132283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,243 DEBUG Processing 343/638 atomic regions from SNP 102654 to 103254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,267 DEBUG Processing 400/1117 atomic regions from SNP 119976 to 120576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,301 DEBUG Processing 534/872 atomic regions from SNP 160091 to 160691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,378 DEBUG Processing 463/465 atomic regions from SNP 138778 to 139378 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,492 DEBUG Processing 547/843 atomic regions from SNP 163937 to 164537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,506 DEBUG Processing 344/638 atomic regions from SNP 102954 to 103554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,534 DEBUG Processing 440/1007 atomic regions from SNP 131983 to 132583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,567 DEBUG Processing 401/1117 atomic regions from SNP 120276 to 120876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,583 DEBUG Processing 535/872 atomic regions from SNP 160391 to 160991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,615 DEBUG Processing 464/465 atomic regions from SNP 139078 to 139678 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,753 DEBUG Processing 548/843 atomic regions from SNP 164237 to 164837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,764 DEBUG Processing 345/638 atomic regions from SNP 103254 to 103854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,829 DEBUG Processing 441/1007 atomic regions from SNP 132283 to 132883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,851 DEBUG Processing 465/465 atomic regions from SNP 139378 to 139978 for chrX (subchromosome 3 of 5). 2025-01-31 09:45:09,861 DEBUG Processing 402/1117 atomic regions from SNP 120576 to 121176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,879 DEBUG Processing 536/872 atomic regions from SNP 160691 to 161291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,976 DEBUG Unique SNPs positions in subchromosome 3: 139979 2025-01-31 09:45:10,009 DEBUG Processing 549/843 atomic regions from SNP 164537 to 165137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,020 DEBUG Processing 346/638 atomic regions from SNP 103554 to 104154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,125 DEBUG Processing 442/1007 atomic regions from SNP 132583 to 133183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,146 DEBUG Processing 403/1117 atomic regions from SNP 120876 to 121476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,170 DEBUG Processing 537/872 atomic regions from SNP 160991 to 161591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,259 DEBUG Processing 550/843 atomic regions from SNP 164837 to 165437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,267 DEBUG Processing 347/638 atomic regions from SNP 103854 to 104454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,411 DEBUG Processing 443/1007 atomic regions from SNP 132883 to 133483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,423 DEBUG Processing 404/1117 atomic regions from SNP 121176 to 121776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,449 DEBUG Processing 538/872 atomic regions from SNP 161291 to 161891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,512 DEBUG Processing 551/843 atomic regions from SNP 165137 to 165737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,516 DEBUG Processing 348/638 atomic regions from SNP 104154 to 104754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,686 DEBUG Subchromosome time: 157.919130358845, subchromosome SNPs: 139979 2025-01-31 09:45:10,696 DEBUG Processing 444/1007 atomic regions from SNP 133183 to 133783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,700 DEBUG Processing 405/1117 atomic regions from SNP 121476 to 122076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,703 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:10,736 DEBUG Processing 539/872 atomic regions from SNP 161591 to 162191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,765 DEBUG Processing 349/638 atomic regions from SNP 104454 to 105054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,788 DEBUG Processing 552/843 atomic regions from SNP 165437 to 166037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,976 DEBUG Processing 406/1117 atomic regions from SNP 121776 to 122376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,984 DEBUG Processing 445/1007 atomic regions from SNP 133483 to 134083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,999 DEBUG Processing 540/872 atomic regions from SNP 161891 to 162491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,013 DEBUG Processing 350/638 atomic regions from SNP 104754 to 105354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,076 DEBUG Processing 553/843 atomic regions from SNP 165737 to 166337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,254 DEBUG Processing 407/1117 atomic regions from SNP 122076 to 122676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,260 DEBUG Processing 351/638 atomic regions from SNP 105054 to 105654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,270 DEBUG Processing 446/1007 atomic regions from SNP 133783 to 134383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,282 DEBUG Processing 541/872 atomic regions from SNP 162191 to 162791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,352 DEBUG Processing 554/843 atomic regions from SNP 166037 to 166637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,510 DEBUG Processing 352/638 atomic regions from SNP 105354 to 105954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,549 DEBUG Processing 408/1117 atomic regions from SNP 122376 to 122976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,558 DEBUG Processing 447/1007 atomic regions from SNP 134083 to 134683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,579 DEBUG Processing 542/872 atomic regions from SNP 162491 to 163091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,621 DEBUG Processing 555/843 atomic regions from SNP 166337 to 166937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,759 DEBUG Processing 353/638 atomic regions from SNP 105654 to 106254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,845 DEBUG Processing 409/1117 atomic regions from SNP 122676 to 123276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,851 DEBUG Processing 448/1007 atomic regions from SNP 134383 to 134983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,874 DEBUG Processing 543/872 atomic regions from SNP 162791 to 163391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,884 DEBUG Processing 556/843 atomic regions from SNP 166637 to 167237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,010 DEBUG Processing 354/638 atomic regions from SNP 105954 to 106554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,144 DEBUG Processing 544/872 atomic regions from SNP 163091 to 163691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,147 DEBUG Processing 557/843 atomic regions from SNP 166937 to 167537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,150 DEBUG Processing 449/1007 atomic regions from SNP 134683 to 135283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,159 DEBUG Processing 410/1117 atomic regions from SNP 122976 to 123576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,265 DEBUG Processing 355/638 atomic regions from SNP 106254 to 106854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,406 DEBUG Processing 558/843 atomic regions from SNP 167237 to 167837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,411 DEBUG Processing 545/872 atomic regions from SNP 163391 to 163991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,443 DEBUG Processing 450/1007 atomic regions from SNP 134983 to 135583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,483 DEBUG Processing 411/1117 atomic regions from SNP 123276 to 123876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,534 DEBUG Processing 356/638 atomic regions from SNP 106554 to 107154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,660 DEBUG Processing 559/843 atomic regions from SNP 167537 to 168137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,700 DEBUG Processing 546/872 atomic regions from SNP 163691 to 164291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,735 DEBUG Processing 451/1007 atomic regions from SNP 135283 to 135883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,808 DEBUG Processing 357/638 atomic regions from SNP 106854 to 107454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,811 DEBUG Processing 412/1117 atomic regions from SNP 123576 to 124176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,912 DEBUG Processing 560/843 atomic regions from SNP 167837 to 168437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,991 DEBUG Processing 547/872 atomic regions from SNP 163991 to 164591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,031 DEBUG Processing 452/1007 atomic regions from SNP 135583 to 136183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,079 DEBUG Processing 358/638 atomic regions from SNP 107154 to 107754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,129 DEBUG Processing 413/1117 atomic regions from SNP 123876 to 124476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,162 DEBUG Processing 561/843 atomic regions from SNP 168137 to 168737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,251 DEBUG Processing 548/872 atomic regions from SNP 164291 to 164891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,320 DEBUG Processing 453/1007 atomic regions from SNP 135883 to 136483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,344 DEBUG Processing 359/638 atomic regions from SNP 107454 to 108054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,417 DEBUG Processing 562/843 atomic regions from SNP 168437 to 169037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,439 DEBUG Processing 414/1117 atomic regions from SNP 124176 to 124776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,506 DEBUG Processing 549/872 atomic regions from SNP 164591 to 165191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,600 DEBUG Processing 360/638 atomic regions from SNP 107754 to 108354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,613 DEBUG Processing 454/1007 atomic regions from SNP 136183 to 136783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,705 DEBUG Processing 563/843 atomic regions from SNP 168737 to 169337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,786 DEBUG Processing 415/1117 atomic regions from SNP 124476 to 125076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,796 DEBUG Processing 550/872 atomic regions from SNP 164891 to 165491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,911 DEBUG Processing 361/638 atomic regions from SNP 108054 to 108654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,952 DEBUG Processing 455/1007 atomic regions from SNP 136483 to 137083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,005 DEBUG Processing 564/843 atomic regions from SNP 169037 to 169637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,072 DEBUG Processing 551/872 atomic regions from SNP 165191 to 165791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,122 DEBUG Processing 416/1117 atomic regions from SNP 124776 to 125376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,182 DEBUG Processing 362/638 atomic regions from SNP 108354 to 108954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,245 DEBUG Processing 456/1007 atomic regions from SNP 136783 to 137383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,259 DEBUG Processing 565/843 atomic regions from SNP 169337 to 169937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,368 DEBUG Processing 552/872 atomic regions from SNP 165491 to 166091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,451 DEBUG Processing 363/638 atomic regions from SNP 108654 to 109254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,460 DEBUG Processing 417/1117 atomic regions from SNP 125076 to 125676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,504 DEBUG Processing 566/843 atomic regions from SNP 169637 to 170237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,525 DEBUG Processing 457/1007 atomic regions from SNP 137083 to 137683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,655 DEBUG Processing 553/872 atomic regions from SNP 165791 to 166391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,702 DEBUG Processing 364/638 atomic regions from SNP 108954 to 109554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,749 DEBUG Processing 567/843 atomic regions from SNP 169937 to 170537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,758 DEBUG Processing 418/1117 atomic regions from SNP 125376 to 125976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,802 DEBUG Processing 458/1007 atomic regions from SNP 137383 to 137983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,927 DEBUG Processing 554/872 atomic regions from SNP 166091 to 166691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,941 DEBUG Processing 365/638 atomic regions from SNP 109254 to 109854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,994 DEBUG Processing 568/843 atomic regions from SNP 170237 to 170837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,040 DEBUG Processing 419/1117 atomic regions from SNP 125676 to 126276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,084 DEBUG Processing 459/1007 atomic regions from SNP 137683 to 138283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,184 DEBUG Processing 555/872 atomic regions from SNP 166391 to 166991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,184 DEBUG Processing 366/638 atomic regions from SNP 109554 to 110154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,247 DEBUG Processing 569/843 atomic regions from SNP 170537 to 171137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,329 DEBUG Processing 420/1117 atomic regions from SNP 125976 to 126576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,373 DEBUG Processing 460/1007 atomic regions from SNP 137983 to 138583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,426 DEBUG Processing 367/638 atomic regions from SNP 109854 to 110454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,469 DEBUG Processing 556/872 atomic regions from SNP 166691 to 167291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,497 DEBUG Processing 570/843 atomic regions from SNP 170837 to 171437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,615 DEBUG Processing 421/1117 atomic regions from SNP 126276 to 126876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,654 DEBUG Processing 461/1007 atomic regions from SNP 138283 to 138883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,691 DEBUG Processing 368/638 atomic regions from SNP 110154 to 110754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,750 DEBUG Processing 571/843 atomic regions from SNP 171137 to 171737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,757 DEBUG Processing 557/872 atomic regions from SNP 166991 to 167591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,898 DEBUG Processing 422/1117 atomic regions from SNP 126576 to 127176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,938 DEBUG Processing 462/1007 atomic regions from SNP 138583 to 139183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,956 DEBUG Processing 369/638 atomic regions from SNP 110454 to 111054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,003 DEBUG Processing 572/843 atomic regions from SNP 171437 to 172037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,027 DEBUG Processing 558/872 atomic regions from SNP 167291 to 167891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,184 DEBUG Processing 423/1117 atomic regions from SNP 126876 to 127476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,205 DEBUG Processing 370/638 atomic regions from SNP 110754 to 111354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,216 DEBUG Processing 463/1007 atomic regions from SNP 138883 to 139483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,254 DEBUG Processing 573/843 atomic regions from SNP 171737 to 172337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,293 DEBUG Processing 559/872 atomic regions from SNP 167591 to 168191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,459 DEBUG Processing 371/638 atomic regions from SNP 111054 to 111654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,467 DEBUG Processing 424/1117 atomic regions from SNP 127176 to 127776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,494 DEBUG Processing 464/1007 atomic regions from SNP 139183 to 139783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,505 DEBUG Processing 574/843 atomic regions from SNP 172037 to 172637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,569 DEBUG Processing 560/872 atomic regions from SNP 167891 to 168491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,732 DEBUG Processing 372/638 atomic regions from SNP 111354 to 111954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,752 DEBUG Processing 575/843 atomic regions from SNP 172337 to 172937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,757 DEBUG Processing 425/1117 atomic regions from SNP 127476 to 128076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,775 DEBUG Processing 465/1007 atomic regions from SNP 139483 to 140083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,851 DEBUG Processing 561/872 atomic regions from SNP 168191 to 168791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,046 DEBUG Processing 576/843 atomic regions from SNP 172637 to 173237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,048 DEBUG Processing 373/638 atomic regions from SNP 111654 to 112254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,101 DEBUG Processing 466/1007 atomic regions from SNP 139783 to 140383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,112 DEBUG Processing 426/1117 atomic regions from SNP 127776 to 128376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,208 DEBUG Processing 562/872 atomic regions from SNP 168491 to 169091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,396 DEBUG Processing 577/843 atomic regions from SNP 172937 to 173537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,421 DEBUG Processing 374/638 atomic regions from SNP 111954 to 112554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,496 DEBUG Processing 467/1007 atomic regions from SNP 140083 to 140683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,504 DEBUG Processing 427/1117 atomic regions from SNP 128076 to 128676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,579 DEBUG Processing 563/872 atomic regions from SNP 168791 to 169391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,656 DEBUG Processing 578/843 atomic regions from SNP 173237 to 173837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,665 DEBUG Processing 375/638 atomic regions from SNP 112254 to 112854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,799 DEBUG Processing 468/1007 atomic regions from SNP 140383 to 140983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,816 DEBUG Processing 428/1117 atomic regions from SNP 128376 to 128976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,954 DEBUG Processing 564/872 atomic regions from SNP 169091 to 169691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,981 DEBUG Processing 579/843 atomic regions from SNP 173537 to 174137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,988 DEBUG Processing 376/638 atomic regions from SNP 112554 to 113154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,126 DEBUG Processing 469/1007 atomic regions from SNP 140683 to 141283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,155 DEBUG Processing 429/1117 atomic regions from SNP 128676 to 129276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,246 DEBUG Processing 565/872 atomic regions from SNP 169391 to 169991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,255 DEBUG Processing 377/638 atomic regions from SNP 112854 to 113454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,267 DEBUG Processing 580/843 atomic regions from SNP 173837 to 174437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,403 DEBUG Processing 470/1007 atomic regions from SNP 140983 to 141583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,443 DEBUG Processing 430/1117 atomic regions from SNP 128976 to 129576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,502 DEBUG Processing 566/872 atomic regions from SNP 169691 to 170291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,513 DEBUG Processing 378/638 atomic regions from SNP 113154 to 113754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,535 DEBUG Processing 581/843 atomic regions from SNP 174137 to 174737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,674 DEBUG Processing 471/1007 atomic regions from SNP 141283 to 141883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,740 DEBUG Processing 431/1117 atomic regions from SNP 129276 to 129876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,773 DEBUG Processing 379/638 atomic regions from SNP 113454 to 114054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,775 DEBUG Processing 567/872 atomic regions from SNP 169991 to 170591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,812 DEBUG Processing 582/843 atomic regions from SNP 174437 to 175037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,962 DEBUG Processing 472/1007 atomic regions from SNP 141583 to 142183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,044 DEBUG Processing 432/1117 atomic regions from SNP 129576 to 130176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,059 DEBUG Processing 380/638 atomic regions from SNP 113754 to 114354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,082 DEBUG Processing 568/872 atomic regions from SNP 170291 to 170891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,098 DEBUG Processing 583/843 atomic regions from SNP 174737 to 175337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,159 DEBUG Segmenting atomic regions: 2025-01-31 09:45:19,262 DEBUG Processing 473/1007 atomic regions from SNP 141883 to 142483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,273 DEBUG Processing 1/227 atomic regions from SNP 0 to 602 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,398 DEBUG Processing 433/1117 atomic regions from SNP 129876 to 130476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,408 DEBUG Processing 381/638 atomic regions from SNP 114054 to 114654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,449 DEBUG Processing 584/843 atomic regions from SNP 175037 to 175637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,456 DEBUG Processing 569/872 atomic regions from SNP 170591 to 171191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,607 DEBUG Processing 2/227 atomic regions from SNP 302 to 904 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,628 DEBUG Processing 474/1007 atomic regions from SNP 142183 to 142783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,772 DEBUG Processing 382/638 atomic regions from SNP 114354 to 114954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,776 DEBUG Processing 585/843 atomic regions from SNP 175337 to 175937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,791 DEBUG Processing 434/1117 atomic regions from SNP 130176 to 130776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,793 DEBUG Processing 570/872 atomic regions from SNP 170891 to 171491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,874 DEBUG Processing 3/227 atomic regions from SNP 604 to 1206 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,929 DEBUG Processing 475/1007 atomic regions from SNP 142483 to 143083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,094 DEBUG Processing 586/843 atomic regions from SNP 175637 to 176237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,098 DEBUG Processing 383/638 atomic regions from SNP 114654 to 115254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,149 DEBUG Processing 571/872 atomic regions from SNP 171191 to 171791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,177 DEBUG Processing 435/1117 atomic regions from SNP 130476 to 131076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,208 DEBUG Processing 4/227 atomic regions from SNP 906 to 1508 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,273 DEBUG Processing 476/1007 atomic regions from SNP 142783 to 143383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,354 DEBUG Processing 384/638 atomic regions from SNP 114954 to 115554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,359 DEBUG Processing 587/843 atomic regions from SNP 175937 to 176537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,401 DEBUG Processing 572/872 atomic regions from SNP 171491 to 172091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,466 DEBUG Processing 5/227 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,486 DEBUG Processing 436/1117 atomic regions from SNP 130776 to 131376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,586 DEBUG Processing 477/1007 atomic regions from SNP 143083 to 143683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,599 DEBUG Processing 385/638 atomic regions from SNP 115254 to 115854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,619 DEBUG Processing 588/843 atomic regions from SNP 176237 to 176837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,661 DEBUG Processing 573/872 atomic regions from SNP 171791 to 172391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,714 DEBUG Processing 6/227 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,785 DEBUG Processing 437/1117 atomic regions from SNP 131076 to 131676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,840 DEBUG Processing 386/638 atomic regions from SNP 115554 to 116154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,914 DEBUG Processing 589/843 atomic regions from SNP 176537 to 177137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,919 DEBUG Processing 574/872 atomic regions from SNP 172091 to 172691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,925 DEBUG Processing 478/1007 atomic regions from SNP 143383 to 143983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,953 DEBUG Processing 7/227 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,069 DEBUG Processing 438/1117 atomic regions from SNP 131376 to 131976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,084 DEBUG Processing 387/638 atomic regions from SNP 115854 to 116454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,182 DEBUG Processing 575/872 atomic regions from SNP 172391 to 172991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,191 DEBUG Processing 8/227 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,191 DEBUG Processing 590/843 atomic regions from SNP 176837 to 177437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,259 DEBUG Processing 479/1007 atomic regions from SNP 143683 to 144283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,325 DEBUG Processing 388/638 atomic regions from SNP 116154 to 116754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,347 DEBUG Processing 439/1117 atomic regions from SNP 131676 to 132276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,431 DEBUG Processing 9/227 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,443 DEBUG Processing 576/872 atomic regions from SNP 172691 to 173291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,464 DEBUG Processing 591/843 atomic regions from SNP 177137 to 177737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,555 DEBUG Processing 480/1007 atomic regions from SNP 143983 to 144583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,568 DEBUG Processing 389/638 atomic regions from SNP 116454 to 117054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,628 DEBUG Processing 440/1117 atomic regions from SNP 131976 to 132576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,671 DEBUG Processing 10/227 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,715 DEBUG Processing 577/872 atomic regions from SNP 172991 to 173591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,738 DEBUG Processing 592/843 atomic regions from SNP 177437 to 178037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,810 DEBUG Processing 390/638 atomic regions from SNP 116754 to 117354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,838 DEBUG Processing 481/1007 atomic regions from SNP 144283 to 144883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,912 DEBUG Processing 11/227 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,919 DEBUG Processing 441/1117 atomic regions from SNP 132276 to 132876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,002 DEBUG Processing 578/872 atomic regions from SNP 173291 to 173891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,007 DEBUG Processing 593/843 atomic regions from SNP 177737 to 178337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,051 DEBUG Processing 391/638 atomic regions from SNP 117054 to 117654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,125 DEBUG Processing 482/1007 atomic regions from SNP 144583 to 145183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,155 DEBUG Processing 12/227 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,205 DEBUG Processing 442/1117 atomic regions from SNP 132576 to 133176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,274 DEBUG Processing 579/872 atomic regions from SNP 173591 to 174191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,278 DEBUG Processing 594/843 atomic regions from SNP 178037 to 178637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,302 DEBUG Processing 392/638 atomic regions from SNP 117354 to 117954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,400 DEBUG Processing 13/227 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,413 DEBUG Processing 483/1007 atomic regions from SNP 144883 to 145483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,492 DEBUG Processing 443/1117 atomic regions from SNP 132876 to 133476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,527 DEBUG Processing 595/843 atomic regions from SNP 178337 to 178937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,543 DEBUG Processing 580/872 atomic regions from SNP 173891 to 174491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,549 DEBUG Processing 393/638 atomic regions from SNP 117654 to 118254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,644 DEBUG Processing 14/227 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,701 DEBUG Processing 484/1007 atomic regions from SNP 145183 to 145783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,773 DEBUG Processing 444/1117 atomic regions from SNP 133176 to 133776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,782 DEBUG Processing 596/843 atomic regions from SNP 178637 to 179237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,788 DEBUG Processing 394/638 atomic regions from SNP 117954 to 118554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,821 DEBUG Processing 581/872 atomic regions from SNP 174191 to 174791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,886 DEBUG Processing 15/227 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,985 DEBUG Processing 485/1007 atomic regions from SNP 145483 to 146083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,030 DEBUG Processing 395/638 atomic regions from SNP 118254 to 118854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,043 DEBUG Processing 597/843 atomic regions from SNP 178937 to 179537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,053 DEBUG Processing 445/1117 atomic regions from SNP 133476 to 134076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,118 DEBUG Processing 582/872 atomic regions from SNP 174491 to 175091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,128 DEBUG Processing 16/227 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,271 DEBUG Processing 486/1007 atomic regions from SNP 145783 to 146383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,272 DEBUG Processing 396/638 atomic regions from SNP 118554 to 119154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,295 DEBUG Processing 598/843 atomic regions from SNP 179237 to 179837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,338 DEBUG Processing 446/1117 atomic regions from SNP 133776 to 134376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,368 DEBUG Processing 17/227 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,415 DEBUG Processing 583/872 atomic regions from SNP 174791 to 175391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,520 DEBUG Processing 397/638 atomic regions from SNP 118854 to 119454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,550 DEBUG Processing 599/843 atomic regions from SNP 179537 to 180137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,561 DEBUG Processing 487/1007 atomic regions from SNP 146083 to 146683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,604 DEBUG Processing 18/227 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,624 DEBUG Processing 447/1117 atomic regions from SNP 134076 to 134676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,710 DEBUG Processing 584/872 atomic regions from SNP 175091 to 175691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,768 DEBUG Processing 398/638 atomic regions from SNP 119154 to 119754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,805 DEBUG Processing 600/843 atomic regions from SNP 179837 to 180437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,850 DEBUG Processing 19/227 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,856 DEBUG Processing 488/1007 atomic regions from SNP 146383 to 146983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,912 DEBUG Processing 448/1117 atomic regions from SNP 134376 to 134976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,000 DEBUG Processing 585/872 atomic regions from SNP 175391 to 175991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,013 DEBUG Processing 399/638 atomic regions from SNP 119454 to 120054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,056 DEBUG Processing 601/843 atomic regions from SNP 180137 to 180737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,096 DEBUG Processing 20/227 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,143 DEBUG Processing 489/1007 atomic regions from SNP 146683 to 147283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,203 DEBUG Processing 449/1117 atomic regions from SNP 134676 to 135276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,259 DEBUG Processing 400/638 atomic regions from SNP 119754 to 120354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,283 DEBUG Processing 586/872 atomic regions from SNP 175691 to 176291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,312 DEBUG Processing 602/843 atomic regions from SNP 180437 to 181037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,338 DEBUG Processing 21/227 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,430 DEBUG Processing 490/1007 atomic regions from SNP 146983 to 147583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,485 DEBUG Processing 450/1117 atomic regions from SNP 134976 to 135576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,531 DEBUG Processing 401/638 atomic regions from SNP 120054 to 120654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,568 DEBUG Processing 587/872 atomic regions from SNP 175991 to 176591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,574 DEBUG Processing 22/227 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,595 DEBUG Processing 603/843 atomic regions from SNP 180737 to 181337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,708 DEBUG Processing 491/1007 atomic regions from SNP 147283 to 147883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,771 DEBUG Processing 451/1117 atomic regions from SNP 135276 to 135876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,798 DEBUG Processing 402/638 atomic regions from SNP 120354 to 120954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,811 DEBUG Processing 23/227 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,845 DEBUG Processing 588/872 atomic regions from SNP 176291 to 176891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,855 DEBUG Processing 604/843 atomic regions from SNP 181037 to 181637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,987 DEBUG Processing 492/1007 atomic regions from SNP 147583 to 148183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,049 DEBUG Processing 403/638 atomic regions from SNP 120654 to 121254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,050 DEBUG Processing 24/227 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,058 DEBUG Processing 452/1117 atomic regions from SNP 135576 to 136176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,099 DEBUG Processing 589/872 atomic regions from SNP 176591 to 177191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,104 DEBUG Processing 605/843 atomic regions from SNP 181337 to 181937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,268 DEBUG Processing 493/1007 atomic regions from SNP 147883 to 148483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,296 DEBUG Processing 25/227 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,302 DEBUG Processing 404/638 atomic regions from SNP 120954 to 121554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,349 DEBUG Processing 606/843 atomic regions from SNP 181637 to 182237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,350 DEBUG Processing 453/1117 atomic regions from SNP 135876 to 136476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,352 DEBUG Processing 590/872 atomic regions from SNP 176891 to 177491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,539 DEBUG Processing 26/227 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,549 DEBUG Processing 494/1007 atomic regions from SNP 148183 to 148783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,572 DEBUG Processing 405/638 atomic regions from SNP 121254 to 121854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,597 DEBUG Processing 607/843 atomic regions from SNP 181937 to 182537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,604 DEBUG Processing 591/872 atomic regions from SNP 177191 to 177791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,637 DEBUG Processing 454/1117 atomic regions from SNP 136176 to 136776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,779 DEBUG Processing 27/227 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,831 DEBUG Processing 495/1007 atomic regions from SNP 148483 to 149083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,837 DEBUG Processing 406/638 atomic regions from SNP 121554 to 122154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,845 DEBUG Processing 608/843 atomic regions from SNP 182237 to 182837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,857 DEBUG Processing 592/872 atomic regions from SNP 177491 to 178091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,921 DEBUG Processing 455/1117 atomic regions from SNP 136476 to 137076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,013 DEBUG Processing 28/227 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,099 DEBUG Processing 609/843 atomic regions from SNP 182537 to 183137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,111 DEBUG Processing 593/872 atomic regions from SNP 177791 to 178391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,114 DEBUG Processing 496/1007 atomic regions from SNP 148783 to 149383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,114 DEBUG Processing 407/638 atomic regions from SNP 121854 to 122454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,202 DEBUG Processing 456/1117 atomic regions from SNP 136776 to 137376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,242 DEBUG Processing 29/227 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,352 DEBUG Processing 610/843 atomic regions from SNP 182837 to 183437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,369 DEBUG Processing 594/872 atomic regions from SNP 178091 to 178691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,375 DEBUG Processing 408/638 atomic regions from SNP 122154 to 122754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,399 DEBUG Processing 497/1007 atomic regions from SNP 149083 to 149683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,478 DEBUG Processing 30/227 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,488 DEBUG Processing 457/1117 atomic regions from SNP 137076 to 137676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,613 DEBUG Processing 611/843 atomic regions from SNP 183137 to 183737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,625 DEBUG Processing 595/872 atomic regions from SNP 178391 to 178991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,631 DEBUG Processing 409/638 atomic regions from SNP 122454 to 123054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,685 DEBUG Processing 498/1007 atomic regions from SNP 149383 to 149983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,718 DEBUG Processing 31/227 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,774 DEBUG Processing 458/1117 atomic regions from SNP 137376 to 137976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,869 DEBUG Processing 612/843 atomic regions from SNP 183437 to 184037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,885 DEBUG Processing 596/872 atomic regions from SNP 178691 to 179291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,895 DEBUG Processing 410/638 atomic regions from SNP 122754 to 123354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,962 DEBUG Processing 32/227 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,964 DEBUG Processing 499/1007 atomic regions from SNP 149683 to 150283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,059 DEBUG Processing 459/1117 atomic regions from SNP 137676 to 138276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,145 DEBUG Processing 613/843 atomic regions from SNP 183737 to 184337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,146 DEBUG Processing 597/872 atomic regions from SNP 178991 to 179591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,173 DEBUG Processing 411/638 atomic regions from SNP 123054 to 123654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,205 DEBUG Processing 33/227 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,246 DEBUG Processing 500/1007 atomic regions from SNP 149983 to 150583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,354 DEBUG Processing 460/1117 atomic regions from SNP 137976 to 138576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,402 DEBUG Processing 598/872 atomic regions from SNP 179291 to 179891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,426 DEBUG Processing 614/843 atomic regions from SNP 184037 to 184637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,442 DEBUG Processing 412/638 atomic regions from SNP 123354 to 123954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,443 DEBUG Processing 34/227 atomic regions from SNP 9966 to 10567 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,524 DEBUG Processing 501/1007 atomic regions from SNP 150283 to 150883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,655 DEBUG Processing 599/872 atomic regions from SNP 179591 to 180191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,677 DEBUG Processing 461/1117 atomic regions from SNP 138276 to 138876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,686 DEBUG Processing 35/227 atomic regions from SNP 10267 to 10868 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,709 DEBUG Processing 615/843 atomic regions from SNP 184337 to 184937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,723 DEBUG Processing 413/638 atomic regions from SNP 123654 to 124254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,803 DEBUG Processing 502/1007 atomic regions from SNP 150583 to 151183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,901 DEBUG Processing 600/872 atomic regions from SNP 179891 to 180491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,925 DEBUG Processing 36/227 atomic regions from SNP 10568 to 11169 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,966 DEBUG Processing 462/1117 atomic regions from SNP 138576 to 139176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,970 DEBUG Processing 616/843 atomic regions from SNP 184637 to 185237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,002 DEBUG Processing 414/638 atomic regions from SNP 123954 to 124554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,083 DEBUG Processing 503/1007 atomic regions from SNP 150883 to 151483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,149 DEBUG Processing 601/872 atomic regions from SNP 180191 to 180791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,163 DEBUG Processing 37/227 atomic regions from SNP 10869 to 11470 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,225 DEBUG Processing 617/843 atomic regions from SNP 184937 to 185537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,251 DEBUG Processing 463/1117 atomic regions from SNP 138876 to 139476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,267 DEBUG Processing 415/638 atomic regions from SNP 124254 to 124854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,357 DEBUG Processing 504/1007 atomic regions from SNP 151183 to 151783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,395 DEBUG Processing 602/872 atomic regions from SNP 180491 to 181091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,398 DEBUG Processing 38/227 atomic regions from SNP 11170 to 11771 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,493 DEBUG Processing 618/843 atomic regions from SNP 185237 to 185837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,535 DEBUG Processing 416/638 atomic regions from SNP 124554 to 125154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,539 DEBUG Processing 464/1117 atomic regions from SNP 139176 to 139776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,634 DEBUG Processing 39/227 atomic regions from SNP 11471 to 12072 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,634 DEBUG Processing 505/1007 atomic regions from SNP 151483 to 152083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,649 DEBUG Processing 603/872 atomic regions from SNP 180791 to 181391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,771 DEBUG Processing 619/843 atomic regions from SNP 185537 to 186137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,812 DEBUG Processing 417/638 atomic regions from SNP 124854 to 125454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,842 DEBUG Processing 465/1117 atomic regions from SNP 139476 to 140076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,872 DEBUG Processing 40/227 atomic regions from SNP 11772 to 12373 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,900 DEBUG Processing 604/872 atomic regions from SNP 181091 to 181691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,914 DEBUG Processing 506/1007 atomic regions from SNP 151783 to 152383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,061 DEBUG Processing 620/843 atomic regions from SNP 185837 to 186437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,113 DEBUG Processing 418/638 atomic regions from SNP 125154 to 125754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,131 DEBUG Processing 41/227 atomic regions from SNP 12073 to 12674 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,145 DEBUG Processing 466/1117 atomic regions from SNP 139776 to 140376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,157 DEBUG Processing 605/872 atomic regions from SNP 181391 to 181991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,203 DEBUG Processing 507/1007 atomic regions from SNP 152083 to 152683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,429 DEBUG Processing 621/843 atomic regions from SNP 186137 to 186737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,464 DEBUG Processing 419/638 atomic regions from SNP 125454 to 126054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,485 DEBUG Processing 42/227 atomic regions from SNP 12374 to 12975 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,508 DEBUG Processing 606/872 atomic regions from SNP 181691 to 182291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,548 DEBUG Processing 467/1117 atomic regions from SNP 140076 to 140676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,582 DEBUG Processing 508/1007 atomic regions from SNP 152383 to 152983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,800 DEBUG Processing 622/843 atomic regions from SNP 186437 to 187037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,841 DEBUG Processing 420/638 atomic regions from SNP 125754 to 126354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,865 DEBUG Processing 43/227 atomic regions from SNP 12675 to 13276 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,893 DEBUG Processing 607/872 atomic regions from SNP 181991 to 182591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,970 DEBUG Processing 468/1117 atomic regions from SNP 140376 to 140976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,998 DEBUG Processing 509/1007 atomic regions from SNP 152683 to 153283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,197 DEBUG Processing 623/843 atomic regions from SNP 186737 to 187337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,224 DEBUG Processing 421/638 atomic regions from SNP 126054 to 126654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,249 DEBUG Processing 44/227 atomic regions from SNP 12976 to 13577 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,291 DEBUG Processing 608/872 atomic regions from SNP 182291 to 182891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,405 DEBUG Processing 469/1117 atomic regions from SNP 140676 to 141276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,451 DEBUG Processing 510/1007 atomic regions from SNP 152983 to 153583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,597 DEBUG Processing 422/638 atomic regions from SNP 126354 to 126954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,618 DEBUG Processing 624/843 atomic regions from SNP 187037 to 187637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,672 DEBUG Processing 45/227 atomic regions from SNP 13277 to 13878 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,710 DEBUG Processing 609/872 atomic regions from SNP 182591 to 183191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,803 DEBUG Processing 470/1117 atomic regions from SNP 140976 to 141576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,845 DEBUG Processing 423/638 atomic regions from SNP 126654 to 127254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,849 DEBUG Processing 511/1007 atomic regions from SNP 153283 to 153883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,872 DEBUG Processing 625/843 atomic regions from SNP 187337 to 187937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,946 DEBUG Processing 46/227 atomic regions from SNP 13578 to 14179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,979 DEBUG Processing 610/872 atomic regions from SNP 182891 to 183491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,090 DEBUG Processing 424/638 atomic regions from SNP 126954 to 127554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,103 DEBUG Processing 471/1117 atomic regions from SNP 141276 to 141876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,134 DEBUG Processing 626/843 atomic regions from SNP 187637 to 188237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,181 DEBUG Processing 512/1007 atomic regions from SNP 153583 to 154183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,187 DEBUG Processing 47/227 atomic regions from SNP 13879 to 14480 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,242 DEBUG Processing 611/872 atomic regions from SNP 183191 to 183791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,359 DEBUG Processing 425/638 atomic regions from SNP 127254 to 127854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,393 DEBUG Processing 627/843 atomic regions from SNP 187937 to 188537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,408 DEBUG Processing 472/1117 atomic regions from SNP 141576 to 142176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,429 DEBUG Processing 48/227 atomic regions from SNP 14180 to 14781 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,493 DEBUG Processing 513/1007 atomic regions from SNP 153883 to 154483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,509 DEBUG Processing 612/872 atomic regions from SNP 183491 to 184091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,684 DEBUG Processing 426/638 atomic regions from SNP 127554 to 128154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,713 DEBUG Processing 628/843 atomic regions from SNP 188237 to 188837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,744 DEBUG Processing 49/227 atomic regions from SNP 14481 to 15082 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,791 DEBUG Processing 473/1117 atomic regions from SNP 141876 to 142476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,831 DEBUG Processing 613/872 atomic regions from SNP 183791 to 184391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,858 DEBUG Processing 514/1007 atomic regions from SNP 154183 to 154783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,012 DEBUG Processing 427/638 atomic regions from SNP 127854 to 128454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,023 DEBUG Processing 629/843 atomic regions from SNP 188537 to 189137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,105 DEBUG Processing 50/227 atomic regions from SNP 14782 to 15383 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,178 DEBUG Processing 614/872 atomic regions from SNP 184091 to 184691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,194 DEBUG Processing 474/1117 atomic regions from SNP 142176 to 142776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,239 DEBUG Processing 515/1007 atomic regions from SNP 154483 to 155083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,331 DEBUG Processing 428/638 atomic regions from SNP 128154 to 128754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,341 DEBUG Processing 630/843 atomic regions from SNP 188837 to 189437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,456 DEBUG Processing 51/227 atomic regions from SNP 15083 to 15684 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,568 DEBUG Processing 615/872 atomic regions from SNP 184391 to 184991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,614 DEBUG Processing 475/1117 atomic regions from SNP 142476 to 143076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,655 DEBUG Processing 516/1007 atomic regions from SNP 154783 to 155383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,679 DEBUG Processing 631/843 atomic regions from SNP 189137 to 189737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,680 DEBUG Processing 429/638 atomic regions from SNP 128454 to 129054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,734 DEBUG Processing 52/227 atomic regions from SNP 15384 to 15985 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,869 DEBUG Processing 616/872 atomic regions from SNP 184691 to 185291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,942 DEBUG Processing 476/1117 atomic regions from SNP 142776 to 143376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,950 DEBUG Processing 430/638 atomic regions from SNP 128754 to 129354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,951 DEBUG Processing 632/843 atomic regions from SNP 189437 to 190037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,985 DEBUG Processing 53/227 atomic regions from SNP 15685 to 16286 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,007 DEBUG Processing 517/1007 atomic regions from SNP 155083 to 155683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,139 DEBUG Processing 617/872 atomic regions from SNP 184991 to 185591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,220 DEBUG Processing 431/638 atomic regions from SNP 129054 to 129654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,240 DEBUG Processing 54/227 atomic regions from SNP 15986 to 16587 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,247 DEBUG Processing 633/843 atomic regions from SNP 189737 to 190337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,272 DEBUG Processing 477/1117 atomic regions from SNP 143076 to 143676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,327 DEBUG Processing 518/1007 atomic regions from SNP 155383 to 155983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,392 DEBUG Processing 618/872 atomic regions from SNP 185291 to 185891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,479 DEBUG Processing 432/638 atomic regions from SNP 129354 to 129954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,493 DEBUG Processing 55/227 atomic regions from SNP 16287 to 16888 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,539 DEBUG Processing 634/843 atomic regions from SNP 190037 to 190637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,598 DEBUG Processing 478/1117 atomic regions from SNP 143376 to 143976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,661 DEBUG Processing 519/1007 atomic regions from SNP 155683 to 156283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,687 DEBUG Processing 619/872 atomic regions from SNP 185591 to 186191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,765 DEBUG Processing 56/227 atomic regions from SNP 16588 to 17189 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,772 DEBUG Processing 433/638 atomic regions from SNP 129654 to 130254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,826 DEBUG Processing 635/843 atomic regions from SNP 190337 to 190937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,928 DEBUG Processing 479/1117 atomic regions from SNP 143676 to 144276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,954 DEBUG Processing 620/872 atomic regions from SNP 185891 to 186491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,982 DEBUG Processing 520/1007 atomic regions from SNP 155983 to 156583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,020 DEBUG Processing 57/227 atomic regions from SNP 16889 to 17490 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,043 DEBUG Processing 434/638 atomic regions from SNP 129954 to 130554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,093 DEBUG Processing 636/843 atomic regions from SNP 190637 to 191237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,204 DEBUG Processing 621/872 atomic regions from SNP 186191 to 186791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,250 DEBUG Processing 480/1117 atomic regions from SNP 143976 to 144576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,266 DEBUG Processing 58/227 atomic regions from SNP 17190 to 17791 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,266 DEBUG Processing 521/1007 atomic regions from SNP 156283 to 156883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,326 DEBUG Processing 435/638 atomic regions from SNP 130254 to 130854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,352 DEBUG Processing 637/843 atomic regions from SNP 190937 to 191537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,458 DEBUG Processing 622/872 atomic regions from SNP 186491 to 187091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,505 DEBUG Processing 59/227 atomic regions from SNP 17491 to 18092 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,544 DEBUG Processing 522/1007 atomic regions from SNP 156583 to 157183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,557 DEBUG Processing 481/1117 atomic regions from SNP 144276 to 144876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,608 DEBUG Processing 436/638 atomic regions from SNP 130554 to 131154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,611 DEBUG Processing 638/843 atomic regions from SNP 191237 to 191837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,728 DEBUG Processing 623/872 atomic regions from SNP 186791 to 187391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,741 DEBUG Processing 60/227 atomic regions from SNP 17792 to 18393 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,820 DEBUG Processing 523/1007 atomic regions from SNP 156883 to 157483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,842 DEBUG Processing 482/1117 atomic regions from SNP 144576 to 145176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,866 DEBUG Processing 639/843 atomic regions from SNP 191537 to 192137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,881 DEBUG Processing 437/638 atomic regions from SNP 130854 to 131454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,973 DEBUG Processing 61/227 atomic regions from SNP 18093 to 18694 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,995 DEBUG Processing 624/872 atomic regions from SNP 187091 to 187691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,091 DEBUG Processing 524/1007 atomic regions from SNP 157183 to 157783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,119 DEBUG Processing 640/843 atomic regions from SNP 191837 to 192437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,141 DEBUG Processing 438/638 atomic regions from SNP 131154 to 131754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,144 DEBUG Processing 483/1117 atomic regions from SNP 144876 to 145476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,204 DEBUG Processing 62/227 atomic regions from SNP 18394 to 18995 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,267 DEBUG Processing 625/872 atomic regions from SNP 187391 to 187991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,367 DEBUG Processing 641/843 atomic regions from SNP 192137 to 192737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,369 DEBUG Processing 525/1007 atomic regions from SNP 157483 to 158083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,398 DEBUG Processing 439/638 atomic regions from SNP 131454 to 132054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,442 DEBUG Processing 63/227 atomic regions from SNP 18695 to 19296 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,464 DEBUG Processing 484/1117 atomic regions from SNP 145176 to 145776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,539 DEBUG Processing 626/872 atomic regions from SNP 187691 to 188291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,637 DEBUG Processing 642/843 atomic regions from SNP 192437 to 193037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,646 DEBUG Processing 526/1007 atomic regions from SNP 157783 to 158383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,664 DEBUG Processing 440/638 atomic regions from SNP 131754 to 132354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,690 DEBUG Processing 64/227 atomic regions from SNP 18996 to 19597 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,763 DEBUG Processing 485/1117 atomic regions from SNP 145476 to 146076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,788 DEBUG Processing 627/872 atomic regions from SNP 187991 to 188591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,889 DEBUG Processing 643/843 atomic regions from SNP 192737 to 193337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,923 DEBUG Processing 441/638 atomic regions from SNP 132054 to 132654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,927 DEBUG Processing 527/1007 atomic regions from SNP 158083 to 158683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,936 DEBUG Processing 65/227 atomic regions from SNP 19297 to 19898 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,054 DEBUG Processing 486/1117 atomic regions from SNP 145776 to 146376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,063 DEBUG Processing 628/872 atomic regions from SNP 188291 to 188891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,135 DEBUG Processing 644/843 atomic regions from SNP 193037 to 193637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,180 DEBUG Processing 442/638 atomic regions from SNP 132354 to 132954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,184 DEBUG Processing 66/227 atomic regions from SNP 19598 to 20199 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,208 DEBUG Processing 528/1007 atomic regions from SNP 158383 to 158983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,349 DEBUG Processing 629/872 atomic regions from SNP 188591 to 189191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,362 DEBUG Processing 487/1117 atomic regions from SNP 146076 to 146676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,381 DEBUG Processing 645/843 atomic regions from SNP 193337 to 193937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,429 DEBUG Processing 67/227 atomic regions from SNP 19899 to 20500 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,431 DEBUG Processing 443/638 atomic regions from SNP 132654 to 133254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,485 DEBUG Processing 529/1007 atomic regions from SNP 158683 to 159283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,630 DEBUG Processing 646/843 atomic regions from SNP 193637 to 194237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,634 DEBUG Processing 630/872 atomic regions from SNP 188891 to 189491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,673 DEBUG Processing 68/227 atomic regions from SNP 20200 to 20801 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,673 DEBUG Processing 488/1117 atomic regions from SNP 146376 to 146976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,704 DEBUG Processing 444/638 atomic regions from SNP 132954 to 133554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,758 DEBUG Processing 530/1007 atomic regions from SNP 158983 to 159583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,882 DEBUG Processing 647/843 atomic regions from SNP 193937 to 194537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,914 DEBUG Processing 69/227 atomic regions from SNP 20501 to 21102 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:36,920 DEBUG Processing 631/872 atomic regions from SNP 189191 to 189791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,963 DEBUG Processing 445/638 atomic regions from SNP 133254 to 133854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,972 DEBUG Processing 489/1117 atomic regions from SNP 146676 to 147276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,037 DEBUG Processing 531/1007 atomic regions from SNP 159283 to 159883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,124 DEBUG Processing 648/843 atomic regions from SNP 194237 to 194837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,150 DEBUG Processing 70/227 atomic regions from SNP 20802 to 21403 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,178 DEBUG Processing 632/872 atomic regions from SNP 189491 to 190091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,234 DEBUG Processing 446/638 atomic regions from SNP 133554 to 134154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,286 DEBUG Processing 490/1117 atomic regions from SNP 146976 to 147576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,316 DEBUG Processing 532/1007 atomic regions from SNP 159583 to 160183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,363 DEBUG Processing 649/843 atomic regions from SNP 194537 to 195137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,381 DEBUG Processing 71/227 atomic regions from SNP 21103 to 21704 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,427 DEBUG Processing 633/872 atomic regions from SNP 189791 to 190391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,493 DEBUG Processing 447/638 atomic regions from SNP 133854 to 134454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,592 DEBUG Processing 533/1007 atomic regions from SNP 159883 to 160483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,600 DEBUG Processing 491/1117 atomic regions from SNP 147276 to 147876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,603 DEBUG Processing 650/843 atomic regions from SNP 194837 to 195437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,612 DEBUG Processing 72/227 atomic regions from SNP 21404 to 22005 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,677 DEBUG Processing 634/872 atomic regions from SNP 190091 to 190691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,755 DEBUG Processing 448/638 atomic regions from SNP 134154 to 134754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,853 DEBUG Processing 651/843 atomic regions from SNP 195137 to 195737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,864 DEBUG Processing 73/227 atomic regions from SNP 21705 to 22306 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:37,876 DEBUG Processing 534/1007 atomic regions from SNP 160183 to 160783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,926 DEBUG Processing 635/872 atomic regions from SNP 190391 to 190991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,932 DEBUG Processing 492/1117 atomic regions from SNP 147576 to 148176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,012 DEBUG Processing 449/638 atomic regions from SNP 134454 to 135054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,108 DEBUG Processing 74/227 atomic regions from SNP 22006 to 22607 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,129 DEBUG Processing 652/843 atomic regions from SNP 195437 to 196037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,164 DEBUG Processing 535/1007 atomic regions from SNP 160483 to 161083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,182 DEBUG Processing 636/872 atomic regions from SNP 190691 to 191291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,219 DEBUG Processing 493/1117 atomic regions from SNP 147876 to 148476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,263 DEBUG Processing 450/638 atomic regions from SNP 134754 to 135354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,354 DEBUG Processing 75/227 atomic regions from SNP 22307 to 22908 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,413 DEBUG Processing 653/843 atomic regions from SNP 195737 to 196337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,443 DEBUG Processing 637/872 atomic regions from SNP 190991 to 191591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,457 DEBUG Processing 536/1007 atomic regions from SNP 160783 to 161383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,506 DEBUG Processing 494/1117 atomic regions from SNP 148176 to 148776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,513 DEBUG Processing 451/638 atomic regions from SNP 135054 to 135654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,600 DEBUG Processing 76/227 atomic regions from SNP 22608 to 23209 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,690 DEBUG Processing 654/843 atomic regions from SNP 196037 to 196637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,713 DEBUG Processing 638/872 atomic regions from SNP 191291 to 191891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,758 DEBUG Processing 537/1007 atomic regions from SNP 161083 to 161683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,760 DEBUG Processing 452/638 atomic regions from SNP 135354 to 135954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,794 DEBUG Processing 495/1117 atomic regions from SNP 148476 to 149076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,844 DEBUG Processing 77/227 atomic regions from SNP 22909 to 23510 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:38,979 DEBUG Processing 639/872 atomic regions from SNP 191591 to 192191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,982 DEBUG Processing 655/843 atomic regions from SNP 196337 to 196937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,007 DEBUG Processing 453/638 atomic regions from SNP 135654 to 136254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,043 DEBUG Processing 538/1007 atomic regions from SNP 161383 to 161983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,080 DEBUG Processing 496/1117 atomic regions from SNP 148776 to 149376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,101 DEBUG Processing 78/227 atomic regions from SNP 23210 to 23811 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,241 DEBUG Processing 640/872 atomic regions from SNP 191891 to 192491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,249 DEBUG Processing 454/638 atomic regions from SNP 135954 to 136554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,271 DEBUG Processing 656/843 atomic regions from SNP 196637 to 197237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,326 DEBUG Processing 539/1007 atomic regions from SNP 161683 to 162283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,346 DEBUG Processing 79/227 atomic regions from SNP 23511 to 24112 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,371 DEBUG Processing 497/1117 atomic regions from SNP 149076 to 149676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,497 DEBUG Processing 641/872 atomic regions from SNP 192191 to 192791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,523 DEBUG Processing 455/638 atomic regions from SNP 136254 to 136854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,539 DEBUG Processing 657/843 atomic regions from SNP 196937 to 197537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,595 DEBUG Processing 80/227 atomic regions from SNP 23812 to 24413 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,616 DEBUG Processing 540/1007 atomic regions from SNP 161983 to 162583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,672 DEBUG Processing 498/1117 atomic regions from SNP 149376 to 149976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,749 DEBUG Processing 642/872 atomic regions from SNP 192491 to 193091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,792 DEBUG Processing 658/843 atomic regions from SNP 197237 to 197837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,795 DEBUG Processing 456/638 atomic regions from SNP 136554 to 137154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,836 DEBUG Processing 81/227 atomic regions from SNP 24113 to 24714 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:39,908 DEBUG Processing 541/1007 atomic regions from SNP 162283 to 162883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,970 DEBUG Processing 499/1117 atomic regions from SNP 149676 to 150276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,002 DEBUG Processing 643/872 atomic regions from SNP 192791 to 193391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,064 DEBUG Processing 457/638 atomic regions from SNP 136854 to 137454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,064 DEBUG Processing 659/843 atomic regions from SNP 197537 to 198137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,078 DEBUG Processing 82/227 atomic regions from SNP 24414 to 25015 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,199 DEBUG Processing 542/1007 atomic regions from SNP 162583 to 163183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,262 DEBUG Processing 644/872 atomic regions from SNP 193091 to 193691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,265 DEBUG Processing 500/1117 atomic regions from SNP 149976 to 150576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,323 DEBUG Processing 83/227 atomic regions from SNP 24715 to 25316 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,342 DEBUG Processing 458/638 atomic regions from SNP 137154 to 137754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,351 DEBUG Processing 660/843 atomic regions from SNP 197837 to 198437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,492 DEBUG Processing 543/1007 atomic regions from SNP 162883 to 163483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,527 DEBUG Processing 645/872 atomic regions from SNP 193391 to 193991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,555 DEBUG Processing 501/1117 atomic regions from SNP 150276 to 150876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,576 DEBUG Processing 84/227 atomic regions from SNP 25016 to 25617 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,608 DEBUG Processing 459/638 atomic regions from SNP 137454 to 138054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,636 DEBUG Processing 661/843 atomic regions from SNP 198137 to 198737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,795 DEBUG Processing 544/1007 atomic regions from SNP 163183 to 163783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,803 DEBUG Processing 646/872 atomic regions from SNP 193691 to 194291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,830 DEBUG Processing 85/227 atomic regions from SNP 25317 to 25918 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:40,861 DEBUG Processing 502/1117 atomic regions from SNP 150576 to 151176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,880 DEBUG Processing 460/638 atomic regions from SNP 137754 to 138354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,920 DEBUG Processing 662/843 atomic regions from SNP 198437 to 199037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,079 DEBUG Processing 647/872 atomic regions from SNP 193991 to 194591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,084 DEBUG Processing 86/227 atomic regions from SNP 25618 to 26219 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,100 DEBUG Processing 545/1007 atomic regions from SNP 163483 to 164083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,146 DEBUG Processing 461/638 atomic regions from SNP 138054 to 138654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,199 DEBUG Processing 503/1117 atomic regions from SNP 150876 to 151476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,201 DEBUG Processing 663/843 atomic regions from SNP 198737 to 199337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,331 DEBUG Processing 87/227 atomic regions from SNP 25919 to 26520 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,347 DEBUG Processing 648/872 atomic regions from SNP 194291 to 194891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,400 DEBUG Processing 546/1007 atomic regions from SNP 163783 to 164383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,407 DEBUG Processing 462/638 atomic regions from SNP 138354 to 138954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,470 DEBUG Processing 664/843 atomic regions from SNP 199037 to 199637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,508 DEBUG Processing 504/1117 atomic regions from SNP 151176 to 151776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,575 DEBUG Processing 88/227 atomic regions from SNP 26220 to 26821 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,610 DEBUG Processing 649/872 atomic regions from SNP 194591 to 195191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,672 DEBUG Processing 463/638 atomic regions from SNP 138654 to 139254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,700 DEBUG Processing 547/1007 atomic regions from SNP 164083 to 164683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,756 DEBUG Processing 665/843 atomic regions from SNP 199337 to 199937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,807 DEBUG Processing 505/1117 atomic regions from SNP 151476 to 152076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,820 DEBUG Processing 89/227 atomic regions from SNP 26521 to 27122 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:41,866 DEBUG Processing 650/872 atomic regions from SNP 194891 to 195491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,953 DEBUG Processing 464/638 atomic regions from SNP 138954 to 139554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,998 DEBUG Processing 548/1007 atomic regions from SNP 164383 to 164983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,057 DEBUG Processing 666/843 atomic regions from SNP 199637 to 200237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,076 DEBUG Processing 90/227 atomic regions from SNP 26822 to 27423 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,102 DEBUG Processing 506/1117 atomic regions from SNP 151776 to 152376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,122 DEBUG Processing 651/872 atomic regions from SNP 195191 to 195791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,237 DEBUG Processing 465/638 atomic regions from SNP 139254 to 139854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,298 DEBUG Processing 549/1007 atomic regions from SNP 164683 to 165283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,326 DEBUG Processing 91/227 atomic regions from SNP 27123 to 27724 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,354 DEBUG Processing 667/843 atomic regions from SNP 199937 to 200537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,377 DEBUG Processing 652/872 atomic regions from SNP 195491 to 196091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,396 DEBUG Processing 507/1117 atomic regions from SNP 152076 to 152676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,494 DEBUG Processing 466/638 atomic regions from SNP 139554 to 140154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,577 DEBUG Processing 92/227 atomic regions from SNP 27424 to 28025 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,597 DEBUG Processing 550/1007 atomic regions from SNP 164983 to 165583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,644 DEBUG Processing 653/872 atomic regions from SNP 195791 to 196391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,647 DEBUG Processing 668/843 atomic regions from SNP 200237 to 200837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,703 DEBUG Processing 508/1117 atomic regions from SNP 152376 to 152976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,745 DEBUG Processing 467/638 atomic regions from SNP 139854 to 140454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,842 DEBUG Processing 93/227 atomic regions from SNP 27725 to 28326 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:42,906 DEBUG Processing 551/1007 atomic regions from SNP 165283 to 165883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,917 DEBUG Processing 654/872 atomic regions from SNP 196091 to 196691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,940 DEBUG Processing 669/843 atomic regions from SNP 200537 to 201137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,994 DEBUG Processing 468/638 atomic regions from SNP 140154 to 140754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,008 DEBUG Processing 509/1117 atomic regions from SNP 152676 to 153276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,093 DEBUG Processing 94/227 atomic regions from SNP 28026 to 28627 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,191 DEBUG Processing 655/872 atomic regions from SNP 196391 to 196991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,210 DEBUG Processing 552/1007 atomic regions from SNP 165583 to 166183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,231 DEBUG Processing 670/843 atomic regions from SNP 200837 to 201437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,242 DEBUG Processing 469/638 atomic regions from SNP 140454 to 141054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,335 DEBUG Processing 510/1117 atomic regions from SNP 152976 to 153576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,347 DEBUG Processing 95/227 atomic regions from SNP 28327 to 28928 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,467 DEBUG Processing 656/872 atomic regions from SNP 196691 to 197291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,516 DEBUG Processing 553/1007 atomic regions from SNP 165883 to 166483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,520 DEBUG Processing 470/638 atomic regions from SNP 140754 to 141354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,531 DEBUG Processing 671/843 atomic regions from SNP 201137 to 201737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,604 DEBUG Processing 96/227 atomic regions from SNP 28628 to 29229 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,667 DEBUG Processing 511/1117 atomic regions from SNP 153276 to 153876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,762 DEBUG Processing 657/872 atomic regions from SNP 196991 to 197591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,768 DEBUG Processing 471/638 atomic regions from SNP 141054 to 141654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,816 DEBUG Processing 554/1007 atomic regions from SNP 166183 to 166783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,824 DEBUG Processing 672/843 atomic regions from SNP 201437 to 202037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,855 DEBUG Processing 97/227 atomic regions from SNP 28929 to 29530 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:43,967 DEBUG Processing 512/1117 atomic regions from SNP 153576 to 154176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,016 DEBUG Processing 472/638 atomic regions from SNP 141354 to 141954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,038 DEBUG Processing 658/872 atomic regions from SNP 197291 to 197891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,100 DEBUG Processing 98/227 atomic regions from SNP 29230 to 29831 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,111 DEBUG Processing 673/843 atomic regions from SNP 201737 to 202337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,118 DEBUG Processing 555/1007 atomic regions from SNP 166483 to 167083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,267 DEBUG Processing 473/638 atomic regions from SNP 141654 to 142254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,270 DEBUG Processing 513/1117 atomic regions from SNP 153876 to 154476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,300 DEBUG Processing 659/872 atomic regions from SNP 197591 to 198191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,348 DEBUG Processing 99/227 atomic regions from SNP 29531 to 30132 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,384 DEBUG Processing 674/843 atomic regions from SNP 202037 to 202637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,421 DEBUG Processing 556/1007 atomic regions from SNP 166783 to 167383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,513 DEBUG Processing 474/638 atomic regions from SNP 141954 to 142554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,554 DEBUG Processing 660/872 atomic regions from SNP 197891 to 198491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,570 DEBUG Processing 514/1117 atomic regions from SNP 154176 to 154776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,596 DEBUG Processing 100/227 atomic regions from SNP 29832 to 30433 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,660 DEBUG Processing 675/843 atomic regions from SNP 202337 to 202937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,722 DEBUG Processing 557/1007 atomic regions from SNP 167083 to 167683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,758 DEBUG Processing 475/638 atomic regions from SNP 142254 to 142854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,798 DEBUG Processing 661/872 atomic regions from SNP 198191 to 198791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,844 DEBUG Processing 101/227 atomic regions from SNP 30133 to 30734 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:44,890 DEBUG Processing 515/1117 atomic regions from SNP 154476 to 155076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,931 DEBUG Processing 676/843 atomic regions from SNP 202637 to 203237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,003 DEBUG Processing 476/638 atomic regions from SNP 142554 to 143154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,014 DEBUG Processing 558/1007 atomic regions from SNP 167383 to 167983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,064 DEBUG Processing 662/872 atomic regions from SNP 198491 to 199091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,089 DEBUG Processing 102/227 atomic regions from SNP 30434 to 31035 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,197 DEBUG Processing 516/1117 atomic regions from SNP 154776 to 155376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,223 DEBUG Processing 677/843 atomic regions from SNP 202937 to 203537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,255 DEBUG Processing 477/638 atomic regions from SNP 142854 to 143454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,307 DEBUG Processing 559/1007 atomic regions from SNP 167683 to 168283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,328 DEBUG Processing 103/227 atomic regions from SNP 30735 to 31336 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,352 DEBUG Processing 663/872 atomic regions from SNP 198791 to 199391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,484 DEBUG Processing 517/1117 atomic regions from SNP 155076 to 155676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,510 DEBUG Processing 478/638 atomic regions from SNP 143154 to 143754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,516 DEBUG Processing 678/843 atomic regions from SNP 203237 to 203837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,568 DEBUG Processing 104/227 atomic regions from SNP 31036 to 31637 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,599 DEBUG Processing 560/1007 atomic regions from SNP 167983 to 168583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,630 DEBUG Processing 664/872 atomic regions from SNP 199091 to 199691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,766 DEBUG Processing 479/638 atomic regions from SNP 143454 to 144054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,782 DEBUG Processing 518/1117 atomic regions from SNP 155376 to 155976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,810 DEBUG Processing 679/843 atomic regions from SNP 203537 to 204137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,818 DEBUG Processing 105/227 atomic regions from SNP 31337 to 31938 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:45,888 DEBUG Processing 561/1007 atomic regions from SNP 168283 to 168883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,889 DEBUG Processing 665/872 atomic regions from SNP 199391 to 199991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,033 DEBUG Processing 480/638 atomic regions from SNP 143754 to 144354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,072 DEBUG Processing 106/227 atomic regions from SNP 31638 to 32239 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,098 DEBUG Processing 519/1117 atomic regions from SNP 155676 to 156276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,108 DEBUG Processing 680/843 atomic regions from SNP 203837 to 204437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,150 DEBUG Processing 666/872 atomic regions from SNP 199691 to 200291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,179 DEBUG Processing 562/1007 atomic regions from SNP 168583 to 169183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,315 DEBUG Processing 481/638 atomic regions from SNP 144054 to 144654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,322 DEBUG Processing 107/227 atomic regions from SNP 31939 to 32540 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,382 DEBUG Processing 681/843 atomic regions from SNP 204137 to 204737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,413 DEBUG Processing 667/872 atomic regions from SNP 199991 to 200591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,427 DEBUG Processing 520/1117 atomic regions from SNP 155976 to 156576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,473 DEBUG Processing 563/1007 atomic regions from SNP 168883 to 169483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,571 DEBUG Processing 108/227 atomic regions from SNP 32240 to 32841 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,598 DEBUG Processing 482/638 atomic regions from SNP 144354 to 144954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,660 DEBUG Processing 682/843 atomic regions from SNP 204437 to 205037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,679 DEBUG Processing 668/872 atomic regions from SNP 200291 to 200891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,720 DEBUG Processing 521/1117 atomic regions from SNP 156276 to 156876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,767 DEBUG Processing 564/1007 atomic regions from SNP 169183 to 169783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,818 DEBUG Processing 109/227 atomic regions from SNP 32541 to 33142 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:46,886 DEBUG Processing 483/638 atomic regions from SNP 144654 to 145254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,927 DEBUG Processing 683/843 atomic regions from SNP 204737 to 205337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,957 DEBUG Processing 669/872 atomic regions from SNP 200591 to 201191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,024 DEBUG Processing 522/1117 atomic regions from SNP 156576 to 157176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,056 DEBUG Processing 565/1007 atomic regions from SNP 169483 to 170083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,061 DEBUG Processing 110/227 atomic regions from SNP 32842 to 33443 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,168 DEBUG Processing 484/638 atomic regions from SNP 144954 to 145554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,203 DEBUG Processing 684/843 atomic regions from SNP 205037 to 205637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,228 DEBUG Processing 670/872 atomic regions from SNP 200891 to 201491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,302 DEBUG Processing 111/227 atomic regions from SNP 33143 to 33744 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,339 DEBUG Processing 523/1117 atomic regions from SNP 156876 to 157476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,343 DEBUG Processing 566/1007 atomic regions from SNP 169783 to 170383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,444 DEBUG Processing 485/638 atomic regions from SNP 145254 to 145854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,483 DEBUG Processing 685/843 atomic regions from SNP 205337 to 205937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,493 DEBUG Processing 671/872 atomic regions from SNP 201191 to 201791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,541 DEBUG Processing 112/227 atomic regions from SNP 33444 to 34045 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,632 DEBUG Processing 567/1007 atomic regions from SNP 170083 to 170683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,657 DEBUG Processing 524/1117 atomic regions from SNP 157176 to 157776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,730 DEBUG Processing 486/638 atomic regions from SNP 145554 to 146154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,750 DEBUG Processing 672/872 atomic regions from SNP 201491 to 202091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,764 DEBUG Processing 686/843 atomic regions from SNP 205637 to 206237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,779 DEBUG Processing 113/227 atomic regions from SNP 33745 to 34346 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:47,923 DEBUG Processing 568/1007 atomic regions from SNP 170383 to 170983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,005 DEBUG Processing 525/1117 atomic regions from SNP 157476 to 158076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,015 DEBUG Processing 673/872 atomic regions from SNP 201791 to 202391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,018 DEBUG Processing 687/843 atomic regions from SNP 205937 to 206537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,024 DEBUG Processing 487/638 atomic regions from SNP 145854 to 146454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,037 DEBUG Processing 114/227 atomic regions from SNP 34046 to 34647 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,210 DEBUG Processing 569/1007 atomic regions from SNP 170683 to 171283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,282 DEBUG Processing 688/843 atomic regions from SNP 206237 to 206837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,285 DEBUG Processing 674/872 atomic regions from SNP 202091 to 202691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,295 DEBUG Processing 115/227 atomic regions from SNP 34347 to 34948 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,297 DEBUG Processing 488/638 atomic regions from SNP 146154 to 146754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,333 DEBUG Processing 526/1117 atomic regions from SNP 157776 to 158376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,495 DEBUG Processing 570/1007 atomic regions from SNP 170983 to 171583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,547 DEBUG Processing 689/843 atomic regions from SNP 206537 to 207137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,548 DEBUG Processing 116/227 atomic regions from SNP 34648 to 35249 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,557 DEBUG Processing 675/872 atomic regions from SNP 202391 to 202991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,570 DEBUG Processing 489/638 atomic regions from SNP 146454 to 147054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,640 DEBUG Processing 527/1117 atomic regions from SNP 158076 to 158676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,780 DEBUG Processing 571/1007 atomic regions from SNP 171283 to 171883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,797 DEBUG Processing 117/227 atomic regions from SNP 34949 to 35550 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:48,812 DEBUG Processing 690/843 atomic regions from SNP 206837 to 207437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,826 DEBUG Processing 676/872 atomic regions from SNP 202691 to 203291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,837 DEBUG Processing 490/638 atomic regions from SNP 146754 to 147354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,942 DEBUG Processing 528/1117 atomic regions from SNP 158376 to 158976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,041 DEBUG Processing 118/227 atomic regions from SNP 35250 to 35851 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,070 DEBUG Processing 572/1007 atomic regions from SNP 171583 to 172183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,073 DEBUG Processing 691/843 atomic regions from SNP 207137 to 207737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,095 DEBUG Processing 677/872 atomic regions from SNP 202991 to 203591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,108 DEBUG Processing 491/638 atomic regions from SNP 147054 to 147654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,241 DEBUG Processing 529/1117 atomic regions from SNP 158676 to 159276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,293 DEBUG Processing 119/227 atomic regions from SNP 35551 to 36152 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,334 DEBUG Processing 692/843 atomic regions from SNP 207437 to 208037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,360 DEBUG Processing 678/872 atomic regions from SNP 203291 to 203891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,364 DEBUG Processing 573/1007 atomic regions from SNP 171883 to 172483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,370 DEBUG Processing 492/638 atomic regions from SNP 147354 to 147954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,533 DEBUG Processing 530/1117 atomic regions from SNP 158976 to 159576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,549 DEBUG Processing 120/227 atomic regions from SNP 35852 to 36453 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,592 DEBUG Processing 693/843 atomic regions from SNP 207737 to 208337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,624 DEBUG Processing 679/872 atomic regions from SNP 203591 to 204191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,632 DEBUG Processing 493/638 atomic regions from SNP 147654 to 148254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,657 DEBUG Processing 574/1007 atomic regions from SNP 172183 to 172783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,802 DEBUG Processing 121/227 atomic regions from SNP 36153 to 36754 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:49,830 DEBUG Processing 531/1117 atomic regions from SNP 159276 to 159876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,847 DEBUG Processing 694/843 atomic regions from SNP 208037 to 208637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,887 DEBUG Processing 680/872 atomic regions from SNP 203891 to 204491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,888 DEBUG Processing 494/638 atomic regions from SNP 147954 to 148554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,944 DEBUG Processing 575/1007 atomic regions from SNP 172483 to 173083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,050 DEBUG Processing 122/227 atomic regions from SNP 36454 to 37055 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,101 DEBUG Processing 695/843 atomic regions from SNP 208337 to 208937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,127 DEBUG Processing 532/1117 atomic regions from SNP 159576 to 160176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,151 DEBUG Processing 681/872 atomic regions from SNP 204191 to 204791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,151 DEBUG Processing 495/638 atomic regions from SNP 148254 to 148854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,242 DEBUG Processing 576/1007 atomic regions from SNP 172783 to 173383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,291 DEBUG Processing 123/227 atomic regions from SNP 36755 to 37356 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,351 DEBUG Processing 696/843 atomic regions from SNP 208637 to 209237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,414 DEBUG Processing 496/638 atomic regions from SNP 148554 to 149154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,415 DEBUG Processing 682/872 atomic regions from SNP 204491 to 205091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,429 DEBUG Processing 533/1117 atomic regions from SNP 159876 to 160476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,525 DEBUG Processing 124/227 atomic regions from SNP 37056 to 37657 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,535 DEBUG Processing 577/1007 atomic regions from SNP 173083 to 173683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,597 DEBUG Processing 697/843 atomic regions from SNP 208937 to 209537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,675 DEBUG Processing 497/638 atomic regions from SNP 148854 to 149454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,676 DEBUG Processing 683/872 atomic regions from SNP 204791 to 205391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,731 DEBUG Processing 534/1117 atomic regions from SNP 160176 to 160776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,782 DEBUG Processing 125/227 atomic regions from SNP 37357 to 37958 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:50,824 DEBUG Processing 578/1007 atomic regions from SNP 173383 to 173983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,844 DEBUG Processing 698/843 atomic regions from SNP 209237 to 209837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,936 DEBUG Processing 684/872 atomic regions from SNP 205091 to 205691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,940 DEBUG Processing 498/638 atomic regions from SNP 149154 to 149754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,033 DEBUG Processing 535/1117 atomic regions from SNP 160476 to 161076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,033 DEBUG Processing 126/227 atomic regions from SNP 37658 to 38259 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,096 DEBUG Processing 699/843 atomic regions from SNP 209537 to 210137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,110 DEBUG Processing 579/1007 atomic regions from SNP 173683 to 174283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,193 DEBUG Processing 685/872 atomic regions from SNP 205391 to 205991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,220 DEBUG Processing 499/638 atomic regions from SNP 149454 to 150054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,287 DEBUG Processing 127/227 atomic regions from SNP 37959 to 38560 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,332 DEBUG Processing 536/1117 atomic regions from SNP 160776 to 161376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,350 DEBUG Processing 700/843 atomic regions from SNP 209837 to 210437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,411 DEBUG Processing 580/1007 atomic regions from SNP 173983 to 174583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,454 DEBUG Processing 686/872 atomic regions from SNP 205691 to 206291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,495 DEBUG Processing 500/638 atomic regions from SNP 149754 to 150354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,537 DEBUG Processing 128/227 atomic regions from SNP 38260 to 38861 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,606 DEBUG Processing 701/843 atomic regions from SNP 210137 to 210737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,629 DEBUG Processing 537/1117 atomic regions from SNP 161076 to 161676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,720 DEBUG Processing 687/872 atomic regions from SNP 205991 to 206591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,734 DEBUG Processing 581/1007 atomic regions from SNP 174283 to 174883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,775 DEBUG Processing 501/638 atomic regions from SNP 150054 to 150654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,781 DEBUG Processing 129/227 atomic regions from SNP 38561 to 39162 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:51,853 DEBUG Processing 702/843 atomic regions from SNP 210437 to 211037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,924 DEBUG Processing 538/1117 atomic regions from SNP 161376 to 161976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,984 DEBUG Processing 688/872 atomic regions from SNP 206291 to 206891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,034 DEBUG Processing 130/227 atomic regions from SNP 38862 to 39463 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,050 DEBUG Processing 582/1007 atomic regions from SNP 174583 to 175183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,064 DEBUG Processing 502/638 atomic regions from SNP 150354 to 150954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,097 DEBUG Processing 703/843 atomic regions from SNP 210737 to 211337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,217 DEBUG Processing 539/1117 atomic regions from SNP 161676 to 162276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,249 DEBUG Processing 689/872 atomic regions from SNP 206591 to 207191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,275 DEBUG Processing 131/227 atomic regions from SNP 39163 to 39764 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,347 DEBUG Processing 704/843 atomic regions from SNP 211037 to 211637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,351 DEBUG Processing 503/638 atomic regions from SNP 150654 to 151254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,359 DEBUG Processing 583/1007 atomic regions from SNP 174883 to 175483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,509 DEBUG Processing 690/872 atomic regions from SNP 206891 to 207491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,513 DEBUG Processing 540/1117 atomic regions from SNP 161976 to 162576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,520 DEBUG Processing 132/227 atomic regions from SNP 39464 to 40065 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,605 DEBUG Processing 705/843 atomic regions from SNP 211337 to 211937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,630 DEBUG Processing 504/638 atomic regions from SNP 150954 to 151554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,655 DEBUG Processing 584/1007 atomic regions from SNP 175183 to 175783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,765 DEBUG Processing 133/227 atomic regions from SNP 39765 to 40366 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:52,766 DEBUG Processing 691/872 atomic regions from SNP 207191 to 207791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,807 DEBUG Processing 541/1117 atomic regions from SNP 162276 to 162876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,868 DEBUG Processing 706/843 atomic regions from SNP 211637 to 212237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,906 DEBUG Processing 505/638 atomic regions from SNP 151254 to 151854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,947 DEBUG Processing 585/1007 atomic regions from SNP 175483 to 176083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,017 DEBUG Processing 134/227 atomic regions from SNP 40066 to 40667 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,024 DEBUG Processing 692/872 atomic regions from SNP 207491 to 208091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,102 DEBUG Processing 542/1117 atomic regions from SNP 162576 to 163176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,148 DEBUG Processing 707/843 atomic regions from SNP 211937 to 212537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,186 DEBUG Processing 506/638 atomic regions from SNP 151554 to 152154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,238 DEBUG Processing 586/1007 atomic regions from SNP 175783 to 176383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,270 DEBUG Processing 135/227 atomic regions from SNP 40367 to 40968 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,301 DEBUG Processing 693/872 atomic regions from SNP 207791 to 208391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,389 DEBUG Processing 543/1117 atomic regions from SNP 162876 to 163476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,409 DEBUG Processing 708/843 atomic regions from SNP 212237 to 212837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,459 DEBUG Processing 507/638 atomic regions from SNP 151854 to 152454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,524 DEBUG Processing 136/227 atomic regions from SNP 40668 to 41269 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,530 DEBUG Processing 587/1007 atomic regions from SNP 176083 to 176683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,591 DEBUG Processing 694/872 atomic regions from SNP 208091 to 208691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,660 DEBUG Processing 709/843 atomic regions from SNP 212537 to 213137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,672 DEBUG Processing 544/1117 atomic regions from SNP 163176 to 163776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,748 DEBUG Processing 508/638 atomic regions from SNP 152154 to 152754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,777 DEBUG Processing 137/227 atomic regions from SNP 40969 to 41570 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:53,819 DEBUG Processing 588/1007 atomic regions from SNP 176383 to 176983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,886 DEBUG Processing 695/872 atomic regions from SNP 208391 to 208991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,901 DEBUG Processing 710/843 atomic regions from SNP 212837 to 213437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,953 DEBUG Processing 545/1117 atomic regions from SNP 163476 to 164076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,025 DEBUG Processing 138/227 atomic regions from SNP 41270 to 41871 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,042 DEBUG Processing 509/638 atomic regions from SNP 152454 to 153054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,102 DEBUG Processing 589/1007 atomic regions from SNP 176683 to 177283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,159 DEBUG Processing 711/843 atomic regions from SNP 213137 to 213737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,163 DEBUG Processing 696/872 atomic regions from SNP 208691 to 209291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,251 DEBUG Processing 546/1117 atomic regions from SNP 163776 to 164376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,271 DEBUG Processing 139/227 atomic regions from SNP 41571 to 42172 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,329 DEBUG Processing 510/638 atomic regions from SNP 152754 to 153354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,381 DEBUG Processing 590/1007 atomic regions from SNP 176983 to 177583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,435 DEBUG Processing 712/843 atomic regions from SNP 213437 to 214037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,441 DEBUG Processing 697/872 atomic regions from SNP 208991 to 209591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,515 DEBUG Processing 140/227 atomic regions from SNP 41872 to 42473 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,542 DEBUG Processing 547/1117 atomic regions from SNP 164076 to 164676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,616 DEBUG Processing 511/638 atomic regions from SNP 153054 to 153654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,656 DEBUG Processing 591/1007 atomic regions from SNP 177283 to 177883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,701 DEBUG Processing 698/872 atomic regions from SNP 209291 to 209891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,719 DEBUG Processing 713/843 atomic regions from SNP 213737 to 214337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,750 DEBUG Processing 141/227 atomic regions from SNP 42173 to 42774 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:54,829 DEBUG Processing 548/1117 atomic regions from SNP 164376 to 164976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,891 DEBUG Processing 512/638 atomic regions from SNP 153354 to 153954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,934 DEBUG Processing 592/1007 atomic regions from SNP 177583 to 178183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,962 DEBUG Processing 699/872 atomic regions from SNP 209591 to 210191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,989 DEBUG Processing 142/227 atomic regions from SNP 42474 to 43075 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,018 DEBUG Processing 714/843 atomic regions from SNP 214037 to 214637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,115 DEBUG Processing 549/1117 atomic regions from SNP 164676 to 165276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,163 DEBUG Processing 513/638 atomic regions from SNP 153654 to 154254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,217 DEBUG Processing 593/1007 atomic regions from SNP 177883 to 178483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,223 DEBUG Processing 700/872 atomic regions from SNP 209891 to 210491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,234 DEBUG Processing 143/227 atomic regions from SNP 42775 to 43376 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,287 DEBUG Processing 715/843 atomic regions from SNP 214337 to 214937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,399 DEBUG Processing 550/1117 atomic regions from SNP 164976 to 165576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,443 DEBUG Processing 514/638 atomic regions from SNP 153954 to 154554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,480 DEBUG Processing 701/872 atomic regions from SNP 210191 to 210791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,481 DEBUG Processing 144/227 atomic regions from SNP 43076 to 43677 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,502 DEBUG Processing 594/1007 atomic regions from SNP 178183 to 178783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,539 DEBUG Processing 716/843 atomic regions from SNP 214637 to 215237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,690 DEBUG Processing 551/1117 atomic regions from SNP 165276 to 165876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,734 DEBUG Processing 145/227 atomic regions from SNP 43377 to 43978 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,735 DEBUG Processing 515/638 atomic regions from SNP 154254 to 154854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,740 DEBUG Processing 702/872 atomic regions from SNP 210491 to 211091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,792 DEBUG Processing 595/1007 atomic regions from SNP 178483 to 179083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,794 DEBUG Processing 717/843 atomic regions from SNP 214937 to 215537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,982 DEBUG Processing 146/227 atomic regions from SNP 43678 to 44279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:55,984 DEBUG Processing 552/1117 atomic regions from SNP 165576 to 166176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,996 DEBUG Processing 703/872 atomic regions from SNP 210791 to 211391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,024 DEBUG Processing 516/638 atomic regions from SNP 154554 to 155154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,050 DEBUG Processing 718/843 atomic regions from SNP 215237 to 215837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,082 DEBUG Processing 596/1007 atomic regions from SNP 178783 to 179383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,227 DEBUG Processing 147/227 atomic regions from SNP 43979 to 44580 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,251 DEBUG Processing 704/872 atomic regions from SNP 211091 to 211691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,279 DEBUG Processing 553/1117 atomic regions from SNP 165876 to 166476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,301 DEBUG Processing 719/843 atomic regions from SNP 215537 to 216137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,315 DEBUG Processing 517/638 atomic regions from SNP 154854 to 155454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,365 DEBUG Processing 597/1007 atomic regions from SNP 179083 to 179683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,465 DEBUG Processing 148/227 atomic regions from SNP 44280 to 44881 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,510 DEBUG Processing 705/872 atomic regions from SNP 211391 to 211991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,548 DEBUG Processing 720/843 atomic regions from SNP 215837 to 216437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,574 DEBUG Processing 554/1117 atomic regions from SNP 166176 to 166776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,612 DEBUG Processing 518/638 atomic regions from SNP 155154 to 155754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,640 DEBUG Processing 598/1007 atomic regions from SNP 179383 to 179983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,704 DEBUG Processing 149/227 atomic regions from SNP 44581 to 45182 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:56,787 DEBUG Processing 706/872 atomic regions from SNP 211691 to 212291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,798 DEBUG Processing 721/843 atomic regions from SNP 216137 to 216737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,863 DEBUG Processing 555/1117 atomic regions from SNP 166476 to 167076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,895 DEBUG Processing 519/638 atomic regions from SNP 155454 to 156054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,909 DEBUG Processing 599/1007 atomic regions from SNP 179683 to 180283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,941 DEBUG Processing 150/227 atomic regions from SNP 44882 to 45483 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,048 DEBUG Processing 722/843 atomic regions from SNP 216437 to 217037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,072 DEBUG Processing 707/872 atomic regions from SNP 211991 to 212591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,155 DEBUG Processing 556/1117 atomic regions from SNP 166776 to 167376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,168 DEBUG Processing 520/638 atomic regions from SNP 155754 to 156354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,181 DEBUG Processing 600/1007 atomic regions from SNP 179983 to 180583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,183 DEBUG Processing 151/227 atomic regions from SNP 45183 to 45784 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,303 DEBUG Processing 723/843 atomic regions from SNP 216737 to 217337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,355 DEBUG Processing 708/872 atomic regions from SNP 212291 to 212891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,429 DEBUG Processing 152/227 atomic regions from SNP 45484 to 46085 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,451 DEBUG Processing 557/1117 atomic regions from SNP 167076 to 167676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,454 DEBUG Processing 601/1007 atomic regions from SNP 180283 to 180883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,455 DEBUG Processing 521/638 atomic regions from SNP 156054 to 156654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,558 DEBUG Processing 724/843 atomic regions from SNP 217037 to 217637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,636 DEBUG Processing 709/872 atomic regions from SNP 212591 to 213191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,672 DEBUG Processing 153/227 atomic regions from SNP 45785 to 46386 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:57,735 DEBUG Processing 602/1007 atomic regions from SNP 180583 to 181183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,737 DEBUG Processing 522/638 atomic regions from SNP 156354 to 156954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,743 DEBUG Processing 558/1117 atomic regions from SNP 167376 to 167976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,811 DEBUG Processing 725/843 atomic regions from SNP 217337 to 217937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,895 DEBUG Processing 710/872 atomic regions from SNP 212891 to 213491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,915 DEBUG Processing 154/227 atomic regions from SNP 46086 to 46687 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,018 DEBUG Processing 603/1007 atomic regions from SNP 180883 to 181483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,025 DEBUG Processing 523/638 atomic regions from SNP 156654 to 157254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,042 DEBUG Processing 559/1117 atomic regions from SNP 167676 to 168276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,063 DEBUG Processing 726/843 atomic regions from SNP 217637 to 218237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,149 DEBUG Processing 711/872 atomic regions from SNP 213191 to 213791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,168 DEBUG Processing 155/227 atomic regions from SNP 46387 to 46988 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,294 DEBUG Processing 524/638 atomic regions from SNP 156954 to 157554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,299 DEBUG Processing 604/1007 atomic regions from SNP 181183 to 181783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,307 DEBUG Processing 727/843 atomic regions from SNP 217937 to 218537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,328 DEBUG Processing 560/1117 atomic regions from SNP 167976 to 168576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,407 DEBUG Processing 712/872 atomic regions from SNP 213491 to 214091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,415 DEBUG Processing 156/227 atomic regions from SNP 46688 to 47289 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,553 DEBUG Processing 728/843 atomic regions from SNP 218237 to 218837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,579 DEBUG Processing 525/638 atomic regions from SNP 157254 to 157854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,580 DEBUG Processing 605/1007 atomic regions from SNP 181483 to 182083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,622 DEBUG Processing 561/1117 atomic regions from SNP 168276 to 168876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,662 DEBUG Processing 157/227 atomic regions from SNP 46989 to 47590 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,666 DEBUG Processing 713/872 atomic regions from SNP 213791 to 214391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,799 DEBUG Processing 729/843 atomic regions from SNP 218537 to 219137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,859 DEBUG Processing 606/1007 atomic regions from SNP 181783 to 182383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,874 DEBUG Processing 526/638 atomic regions from SNP 157554 to 158154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,922 DEBUG Processing 158/227 atomic regions from SNP 47290 to 47891 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:58,934 DEBUG Processing 562/1117 atomic regions from SNP 168576 to 169176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,959 DEBUG Processing 714/872 atomic regions from SNP 214091 to 214691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,053 DEBUG Processing 730/843 atomic regions from SNP 218837 to 219437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,141 DEBUG Processing 607/1007 atomic regions from SNP 182083 to 182683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,164 DEBUG Processing 527/638 atomic regions from SNP 157854 to 158454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,175 DEBUG Processing 159/227 atomic regions from SNP 47591 to 48192 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,232 DEBUG Processing 715/872 atomic regions from SNP 214391 to 214991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,236 DEBUG Processing 563/1117 atomic regions from SNP 168876 to 169476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,299 DEBUG Processing 731/843 atomic regions from SNP 219137 to 219737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,417 DEBUG Processing 608/1007 atomic regions from SNP 182383 to 182983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,421 DEBUG Processing 160/227 atomic regions from SNP 47892 to 48493 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,432 DEBUG Processing 528/638 atomic regions from SNP 158154 to 158754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,487 DEBUG Processing 716/872 atomic regions from SNP 214691 to 215291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,534 DEBUG Processing 564/1117 atomic regions from SNP 169176 to 169776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,550 DEBUG Processing 732/843 atomic regions from SNP 219437 to 220037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,659 DEBUG Processing 161/227 atomic regions from SNP 48193 to 48794 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,687 DEBUG Processing 529/638 atomic regions from SNP 158454 to 159054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,701 DEBUG Processing 609/1007 atomic regions from SNP 182683 to 183283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,745 DEBUG Processing 717/872 atomic regions from SNP 214991 to 215591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,796 DEBUG Processing 733/843 atomic regions from SNP 219737 to 220337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,830 DEBUG Processing 565/1117 atomic regions from SNP 169476 to 170076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,892 DEBUG Processing 162/227 atomic regions from SNP 48494 to 49095 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:59,939 DEBUG Processing 530/638 atomic regions from SNP 158754 to 159354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,990 DEBUG Processing 610/1007 atomic regions from SNP 182983 to 183583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,009 DEBUG Processing 718/872 atomic regions from SNP 215291 to 215891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,047 DEBUG Processing 734/843 atomic regions from SNP 220037 to 220637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,126 DEBUG Processing 566/1117 atomic regions from SNP 169776 to 170376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,128 DEBUG Processing 163/227 atomic regions from SNP 48795 to 49396 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,188 DEBUG Processing 531/638 atomic regions from SNP 159054 to 159654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,280 DEBUG Processing 719/872 atomic regions from SNP 215591 to 216191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,283 DEBUG Processing 611/1007 atomic regions from SNP 183283 to 183883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,303 DEBUG Processing 735/843 atomic regions from SNP 220337 to 220937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,376 DEBUG Processing 164/227 atomic regions from SNP 49096 to 49697 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,418 DEBUG Processing 567/1117 atomic regions from SNP 170076 to 170676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,447 DEBUG Processing 532/638 atomic regions from SNP 159354 to 159954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,549 DEBUG Processing 720/872 atomic regions from SNP 215891 to 216491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,558 DEBUG Processing 736/843 atomic regions from SNP 220637 to 221237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,569 DEBUG Processing 612/1007 atomic regions from SNP 183583 to 184183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,616 DEBUG Processing 165/227 atomic regions from SNP 49397 to 49998 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,696 DEBUG Processing 533/638 atomic regions from SNP 159654 to 160254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,703 DEBUG Processing 568/1117 atomic regions from SNP 170376 to 170976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,809 DEBUG Processing 721/872 atomic regions from SNP 216191 to 216791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,813 DEBUG Processing 737/843 atomic regions from SNP 220937 to 221537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,853 DEBUG Processing 166/227 atomic regions from SNP 49698 to 50299 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:00,855 DEBUG Processing 613/1007 atomic regions from SNP 183883 to 184483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,961 DEBUG Processing 534/638 atomic regions from SNP 159954 to 160554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,992 DEBUG Processing 569/1117 atomic regions from SNP 170676 to 171276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,061 DEBUG Processing 722/872 atomic regions from SNP 216491 to 217091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,086 DEBUG Processing 738/843 atomic regions from SNP 221237 to 221837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,093 DEBUG Processing 167/227 atomic regions from SNP 49999 to 50600 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,141 DEBUG Processing 614/1007 atomic regions from SNP 184183 to 184783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,226 DEBUG Processing 535/638 atomic regions from SNP 160254 to 160854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,284 DEBUG Processing 570/1117 atomic regions from SNP 170976 to 171576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,315 DEBUG Processing 723/872 atomic regions from SNP 216791 to 217391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,340 DEBUG Processing 168/227 atomic regions from SNP 50300 to 50901 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,373 DEBUG Processing 739/843 atomic regions from SNP 221537 to 222137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,426 DEBUG Processing 615/1007 atomic regions from SNP 184483 to 185083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,495 DEBUG Processing 536/638 atomic regions from SNP 160554 to 161154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,570 DEBUG Processing 724/872 atomic regions from SNP 217091 to 217691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,574 DEBUG Processing 571/1117 atomic regions from SNP 171276 to 171876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,581 DEBUG Processing 169/227 atomic regions from SNP 50601 to 51202 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,644 DEBUG Processing 740/843 atomic regions from SNP 221837 to 222437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,709 DEBUG Processing 616/1007 atomic regions from SNP 184783 to 185383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,764 DEBUG Processing 537/638 atomic regions from SNP 160854 to 161454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,822 DEBUG Processing 170/227 atomic regions from SNP 50902 to 51503 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:01,829 DEBUG Processing 725/872 atomic regions from SNP 217391 to 217991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,867 DEBUG Processing 572/1117 atomic regions from SNP 171576 to 172176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,909 DEBUG Processing 741/843 atomic regions from SNP 222137 to 222737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,987 DEBUG Processing 617/1007 atomic regions from SNP 185083 to 185683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,036 DEBUG Processing 538/638 atomic regions from SNP 161154 to 161754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,067 DEBUG Processing 171/227 atomic regions from SNP 51203 to 51804 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,090 DEBUG Processing 726/872 atomic regions from SNP 217691 to 218291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,160 DEBUG Processing 573/1117 atomic regions from SNP 171876 to 172476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,168 DEBUG Processing 742/843 atomic regions from SNP 222437 to 223037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,262 DEBUG Processing 618/1007 atomic regions from SNP 185383 to 185983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,291 DEBUG Processing 539/638 atomic regions from SNP 161454 to 162054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,309 DEBUG Processing 172/227 atomic regions from SNP 51504 to 52105 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,351 DEBUG Processing 727/872 atomic regions from SNP 217991 to 218591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,445 DEBUG Processing 743/843 atomic regions from SNP 222737 to 223337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,451 DEBUG Processing 574/1117 atomic regions from SNP 172176 to 172776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,546 DEBUG Processing 619/1007 atomic regions from SNP 185683 to 186283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,549 DEBUG Processing 173/227 atomic regions from SNP 51805 to 52406 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,569 DEBUG Processing 540/638 atomic regions from SNP 161754 to 162354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,611 DEBUG Processing 728/872 atomic regions from SNP 218291 to 218891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,729 DEBUG Processing 744/843 atomic regions from SNP 223037 to 223637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,734 DEBUG Processing 575/1117 atomic regions from SNP 172476 to 173076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,789 DEBUG Processing 174/227 atomic regions from SNP 52106 to 52707 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:02,835 DEBUG Processing 541/638 atomic regions from SNP 162054 to 162654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,836 DEBUG Processing 620/1007 atomic regions from SNP 185983 to 186583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,872 DEBUG Processing 729/872 atomic regions from SNP 218591 to 219191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,006 DEBUG Processing 745/843 atomic regions from SNP 223337 to 223937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,017 DEBUG Processing 576/1117 atomic regions from SNP 172776 to 173376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,035 DEBUG Processing 175/227 atomic regions from SNP 52407 to 53008 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,099 DEBUG Processing 542/638 atomic regions from SNP 162354 to 162954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,141 DEBUG Processing 621/1007 atomic regions from SNP 186283 to 186883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,142 DEBUG Processing 730/872 atomic regions from SNP 218891 to 219491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,260 DEBUG Processing 746/843 atomic regions from SNP 223637 to 224237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,272 DEBUG Processing 176/227 atomic regions from SNP 52708 to 53309 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,297 DEBUG Processing 577/1117 atomic regions from SNP 173076 to 173676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,360 DEBUG Processing 543/638 atomic regions from SNP 162654 to 163254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,404 DEBUG Processing 731/872 atomic regions from SNP 219191 to 219791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,432 DEBUG Processing 622/1007 atomic regions from SNP 186583 to 187183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,501 DEBUG Processing 177/227 atomic regions from SNP 53009 to 53610 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,509 DEBUG Processing 747/843 atomic regions from SNP 223937 to 224537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,581 DEBUG Processing 578/1117 atomic regions from SNP 173376 to 173976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,622 DEBUG Processing 544/638 atomic regions from SNP 162954 to 163554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,670 DEBUG Processing 732/872 atomic regions from SNP 219491 to 220091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,726 DEBUG Processing 623/1007 atomic regions from SNP 186883 to 187483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,735 DEBUG Processing 178/227 atomic regions from SNP 53310 to 53911 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:03,773 DEBUG Processing 748/843 atomic regions from SNP 224237 to 224837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,868 DEBUG Processing 579/1117 atomic regions from SNP 173676 to 174276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,898 DEBUG Processing 545/638 atomic regions from SNP 163254 to 163854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,933 DEBUG Processing 733/872 atomic regions from SNP 219791 to 220391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,974 DEBUG Processing 179/227 atomic regions from SNP 53611 to 54212 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,024 DEBUG Processing 624/1007 atomic regions from SNP 187183 to 187783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,053 DEBUG Processing 749/843 atomic regions from SNP 224537 to 225137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,160 DEBUG Processing 580/1117 atomic regions from SNP 173976 to 174576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,179 DEBUG Processing 546/638 atomic regions from SNP 163554 to 164154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,193 DEBUG Processing 734/872 atomic regions from SNP 220091 to 220691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,215 DEBUG Processing 180/227 atomic regions from SNP 53912 to 54513 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,315 DEBUG Processing 625/1007 atomic regions from SNP 187483 to 188083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,340 DEBUG Processing 750/843 atomic regions from SNP 224837 to 225437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,451 DEBUG Processing 547/638 atomic regions from SNP 163854 to 164454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,452 DEBUG Processing 581/1117 atomic regions from SNP 174276 to 174876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,454 DEBUG Processing 735/872 atomic regions from SNP 220391 to 220991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,457 DEBUG Processing 181/227 atomic regions from SNP 54213 to 54814 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,604 DEBUG Processing 626/1007 atomic regions from SNP 187783 to 188383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,615 DEBUG Processing 751/843 atomic regions from SNP 225137 to 225737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,701 DEBUG Processing 182/227 atomic regions from SNP 54514 to 55115 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,714 DEBUG Processing 736/872 atomic regions from SNP 220691 to 221291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,728 DEBUG Processing 548/638 atomic regions from SNP 164154 to 164754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,748 DEBUG Processing 582/1117 atomic regions from SNP 174576 to 175176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,874 DEBUG Processing 752/843 atomic regions from SNP 225437 to 226037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,894 DEBUG Processing 627/1007 atomic regions from SNP 188083 to 188683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,935 DEBUG Processing 183/227 atomic regions from SNP 54815 to 55416 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:04,973 DEBUG Processing 737/872 atomic regions from SNP 220991 to 221591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,991 DEBUG Processing 549/638 atomic regions from SNP 164454 to 165054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,039 DEBUG Processing 583/1117 atomic regions from SNP 174876 to 175476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,133 DEBUG Processing 753/843 atomic regions from SNP 225737 to 226337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,175 DEBUG Processing 184/227 atomic regions from SNP 55116 to 55717 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,185 DEBUG Processing 628/1007 atomic regions from SNP 188383 to 188983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,232 DEBUG Processing 738/872 atomic regions from SNP 221291 to 221891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,254 DEBUG Processing 550/638 atomic regions from SNP 164754 to 165354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,333 DEBUG Processing 584/1117 atomic regions from SNP 175176 to 175776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,395 DEBUG Processing 754/843 atomic regions from SNP 226037 to 226637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,419 DEBUG Processing 185/227 atomic regions from SNP 55417 to 56018 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,472 DEBUG Processing 629/1007 atomic regions from SNP 188683 to 189283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,488 DEBUG Processing 739/872 atomic regions from SNP 221591 to 222191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,501 DEBUG Processing 551/638 atomic regions from SNP 165054 to 165654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,630 DEBUG Processing 585/1117 atomic regions from SNP 175476 to 176076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,658 DEBUG Processing 755/843 atomic regions from SNP 226337 to 226937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,676 DEBUG Processing 186/227 atomic regions from SNP 55718 to 56319 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:05,749 DEBUG Processing 552/638 atomic regions from SNP 165354 to 165954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,751 DEBUG Processing 740/872 atomic regions from SNP 221891 to 222491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,787 DEBUG Processing 630/1007 atomic regions from SNP 188983 to 189583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,926 DEBUG Processing 586/1117 atomic regions from SNP 175776 to 176376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,941 DEBUG Processing 756/843 atomic regions from SNP 226637 to 227237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,948 DEBUG Processing 187/227 atomic regions from SNP 56019 to 56620 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,006 DEBUG Processing 553/638 atomic regions from SNP 165654 to 166254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,041 DEBUG Processing 741/872 atomic regions from SNP 222191 to 222791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,097 DEBUG Processing 631/1007 atomic regions from SNP 189283 to 189883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,213 DEBUG Processing 188/227 atomic regions from SNP 56320 to 56921 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,217 DEBUG Processing 757/843 atomic regions from SNP 226937 to 227537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,229 DEBUG Processing 587/1117 atomic regions from SNP 176076 to 176676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,265 DEBUG Processing 554/638 atomic regions from SNP 165954 to 166554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,329 DEBUG Processing 742/872 atomic regions from SNP 222491 to 223091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,381 DEBUG Processing 632/1007 atomic regions from SNP 189583 to 190183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,467 DEBUG Processing 189/227 atomic regions from SNP 56621 to 57222 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,508 DEBUG Processing 758/843 atomic regions from SNP 227237 to 227837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,531 DEBUG Processing 588/1117 atomic regions from SNP 176376 to 176976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,555 DEBUG Processing 555/638 atomic regions from SNP 166254 to 166854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,588 DEBUG Processing 743/872 atomic regions from SNP 222791 to 223391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,663 DEBUG Processing 633/1007 atomic regions from SNP 189883 to 190483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,712 DEBUG Processing 190/227 atomic regions from SNP 56922 to 57523 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:06,794 DEBUG Processing 759/843 atomic regions from SNP 227537 to 228137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,829 DEBUG Processing 589/1117 atomic regions from SNP 176676 to 177276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,848 DEBUG Processing 556/638 atomic regions from SNP 166554 to 167154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,876 DEBUG Processing 744/872 atomic regions from SNP 223091 to 223691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,947 DEBUG Processing 634/1007 atomic regions from SNP 190183 to 190783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,951 DEBUG Processing 191/227 atomic regions from SNP 57223 to 57824 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,093 DEBUG Processing 760/843 atomic regions from SNP 227837 to 228437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,123 DEBUG Processing 590/1117 atomic regions from SNP 176976 to 177576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,132 DEBUG Processing 745/872 atomic regions from SNP 223391 to 223991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,134 DEBUG Processing 557/638 atomic regions from SNP 166854 to 167454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,197 DEBUG Processing 192/227 atomic regions from SNP 57524 to 58125 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,235 DEBUG Processing 635/1007 atomic regions from SNP 190483 to 191083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,384 DEBUG Processing 761/843 atomic regions from SNP 228137 to 228737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,398 DEBUG Processing 746/872 atomic regions from SNP 223691 to 224291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,422 DEBUG Processing 591/1117 atomic regions from SNP 177276 to 177876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,425 DEBUG Processing 558/638 atomic regions from SNP 167154 to 167754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,450 DEBUG Processing 193/227 atomic regions from SNP 57825 to 58426 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,525 DEBUG Processing 636/1007 atomic regions from SNP 190783 to 191383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,656 DEBUG Processing 762/843 atomic regions from SNP 228437 to 229037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,661 DEBUG Processing 747/872 atomic regions from SNP 223991 to 224591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,701 DEBUG Processing 559/638 atomic regions from SNP 167454 to 168054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,707 DEBUG Processing 194/227 atomic regions from SNP 58126 to 58727 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,743 DEBUG Processing 592/1117 atomic regions from SNP 177576 to 178176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,816 DEBUG Processing 637/1007 atomic regions from SNP 191083 to 191683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,928 DEBUG Processing 748/872 atomic regions from SNP 224291 to 224891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,944 DEBUG Processing 763/843 atomic regions from SNP 228737 to 229337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,969 DEBUG Processing 195/227 atomic regions from SNP 58427 to 59028 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:07,987 DEBUG Processing 560/638 atomic regions from SNP 167754 to 168354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,068 DEBUG Processing 593/1117 atomic regions from SNP 177876 to 178476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,101 DEBUG Processing 638/1007 atomic regions from SNP 191383 to 191983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,191 DEBUG Processing 749/872 atomic regions from SNP 224591 to 225191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,203 DEBUG Processing 764/843 atomic regions from SNP 229037 to 229637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,225 DEBUG Processing 196/227 atomic regions from SNP 58728 to 59329 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,284 DEBUG Processing 561/638 atomic regions from SNP 168054 to 168654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,368 DEBUG Processing 594/1117 atomic regions from SNP 178176 to 178776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,390 DEBUG Processing 639/1007 atomic regions from SNP 191683 to 192283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,454 DEBUG Processing 750/872 atomic regions from SNP 224891 to 225491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,462 DEBUG Processing 765/843 atomic regions from SNP 229337 to 229937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,487 DEBUG Processing 197/227 atomic regions from SNP 59029 to 59630 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,568 DEBUG Processing 562/638 atomic regions from SNP 168354 to 168954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,669 DEBUG Processing 595/1117 atomic regions from SNP 178476 to 179076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,682 DEBUG Processing 640/1007 atomic regions from SNP 191983 to 192583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,721 DEBUG Processing 751/872 atomic regions from SNP 225191 to 225791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,723 DEBUG Processing 766/843 atomic regions from SNP 229637 to 230237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,727 DEBUG Processing 198/227 atomic regions from SNP 59330 to 59931 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,844 DEBUG Processing 563/638 atomic regions from SNP 168654 to 169254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,970 DEBUG Processing 199/227 atomic regions from SNP 59631 to 60232 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:08,976 DEBUG Processing 596/1117 atomic regions from SNP 178776 to 179376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,977 DEBUG Processing 641/1007 atomic regions from SNP 192283 to 192883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,985 DEBUG Processing 767/843 atomic regions from SNP 229937 to 230537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,988 DEBUG Processing 752/872 atomic regions from SNP 225491 to 226091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,104 DEBUG Processing 564/638 atomic regions from SNP 168954 to 169554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,220 DEBUG Processing 200/227 atomic regions from SNP 59932 to 60533 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,251 DEBUG Processing 768/843 atomic regions from SNP 230237 to 230837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,256 DEBUG Processing 753/872 atomic regions from SNP 225791 to 226391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,276 DEBUG Processing 642/1007 atomic regions from SNP 192583 to 193183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,301 DEBUG Processing 597/1117 atomic regions from SNP 179076 to 179676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,364 DEBUG Processing 565/638 atomic regions from SNP 169254 to 169854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,462 DEBUG Processing 201/227 atomic regions from SNP 60233 to 60834 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,524 DEBUG Processing 754/872 atomic regions from SNP 226091 to 226691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,535 DEBUG Processing 769/843 atomic regions from SNP 230537 to 231137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,570 DEBUG Processing 643/1007 atomic regions from SNP 192883 to 193483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,599 DEBUG Processing 598/1117 atomic regions from SNP 179376 to 179976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,625 DEBUG Processing 566/638 atomic regions from SNP 169554 to 170154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,701 DEBUG Processing 202/227 atomic regions from SNP 60534 to 61135 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:09,787 DEBUG Processing 755/872 atomic regions from SNP 226391 to 226991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,825 DEBUG Processing 770/843 atomic regions from SNP 230837 to 231437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,861 DEBUG Processing 644/1007 atomic regions from SNP 193183 to 193783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,891 DEBUG Processing 567/638 atomic regions from SNP 169854 to 170454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,903 DEBUG Processing 599/1117 atomic regions from SNP 179676 to 180276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,946 DEBUG Processing 203/227 atomic regions from SNP 60835 to 61436 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,048 DEBUG Processing 756/872 atomic regions from SNP 226691 to 227291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,087 DEBUG Processing 771/843 atomic regions from SNP 231137 to 231737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,151 DEBUG Processing 645/1007 atomic regions from SNP 193483 to 194083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,156 DEBUG Processing 568/638 atomic regions from SNP 170154 to 170754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,194 DEBUG Processing 204/227 atomic regions from SNP 61136 to 61737 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,207 DEBUG Processing 600/1117 atomic regions from SNP 179976 to 180576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,307 DEBUG Processing 757/872 atomic regions from SNP 226991 to 227591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,370 DEBUG Processing 772/843 atomic regions from SNP 231437 to 232037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,423 DEBUG Processing 569/638 atomic regions from SNP 170454 to 171054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,444 DEBUG Processing 646/1007 atomic regions from SNP 193783 to 194383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,447 DEBUG Processing 205/227 atomic regions from SNP 61437 to 62038 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,502 DEBUG Processing 601/1117 atomic regions from SNP 180276 to 180876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,563 DEBUG Processing 758/872 atomic regions from SNP 227291 to 227891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,660 DEBUG Processing 773/843 atomic regions from SNP 231737 to 232337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,687 DEBUG Processing 570/638 atomic regions from SNP 170754 to 171354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,699 DEBUG Processing 206/227 atomic regions from SNP 61738 to 62339 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:10,734 DEBUG Processing 647/1007 atomic regions from SNP 194083 to 194683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,798 DEBUG Processing 602/1117 atomic regions from SNP 180576 to 181176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,819 DEBUG Processing 759/872 atomic regions from SNP 227591 to 228191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,934 DEBUG Processing 774/843 atomic regions from SNP 232037 to 232637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,947 DEBUG Processing 571/638 atomic regions from SNP 171054 to 171654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,957 DEBUG Processing 207/227 atomic regions from SNP 62039 to 62640 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,018 DEBUG Processing 648/1007 atomic regions from SNP 194383 to 194983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,079 DEBUG Processing 760/872 atomic regions from SNP 227891 to 228491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,091 DEBUG Processing 603/1117 atomic regions from SNP 180876 to 181476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,194 DEBUG Processing 775/843 atomic regions from SNP 232337 to 232937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,205 DEBUG Processing 572/638 atomic regions from SNP 171354 to 171954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,208 DEBUG Processing 208/227 atomic regions from SNP 62340 to 62941 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,302 DEBUG Processing 649/1007 atomic regions from SNP 194683 to 195283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,340 DEBUG Processing 761/872 atomic regions from SNP 228191 to 228791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,385 DEBUG Processing 604/1117 atomic regions from SNP 181176 to 181776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,462 DEBUG Processing 209/227 atomic regions from SNP 62641 to 63242 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,471 DEBUG Processing 573/638 atomic regions from SNP 171654 to 172254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,475 DEBUG Processing 776/843 atomic regions from SNP 232637 to 233237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,587 DEBUG Processing 650/1007 atomic regions from SNP 194983 to 195583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,604 DEBUG Processing 762/872 atomic regions from SNP 228491 to 229091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,681 DEBUG Processing 605/1117 atomic regions from SNP 181476 to 182076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,718 DEBUG Processing 210/227 atomic regions from SNP 62942 to 63543 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,731 DEBUG Processing 574/638 atomic regions from SNP 171954 to 172554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,764 DEBUG Processing 777/843 atomic regions from SNP 232937 to 233537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,863 DEBUG Processing 763/872 atomic regions from SNP 228791 to 229391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,875 DEBUG Processing 651/1007 atomic regions from SNP 195283 to 195883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,970 DEBUG Processing 211/227 atomic regions from SNP 63243 to 63844 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:11,978 DEBUG Processing 606/1117 atomic regions from SNP 181776 to 182376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,996 DEBUG Processing 575/638 atomic regions from SNP 172254 to 172854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,061 DEBUG Processing 778/843 atomic regions from SNP 233237 to 233837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,118 DEBUG Processing 764/872 atomic regions from SNP 229091 to 229691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,153 DEBUG Processing 652/1007 atomic regions from SNP 195583 to 196183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,220 DEBUG Processing 212/227 atomic regions from SNP 63544 to 64145 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,259 DEBUG Processing 576/638 atomic regions from SNP 172554 to 173154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,278 DEBUG Processing 607/1117 atomic regions from SNP 182076 to 182676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,340 DEBUG Processing 779/843 atomic regions from SNP 233537 to 234137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,380 DEBUG Processing 765/872 atomic regions from SNP 229391 to 229991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,431 DEBUG Processing 653/1007 atomic regions from SNP 195883 to 196483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,466 DEBUG Processing 213/227 atomic regions from SNP 63845 to 64446 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,521 DEBUG Processing 577/638 atomic regions from SNP 172854 to 173454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,582 DEBUG Processing 608/1117 atomic regions from SNP 182376 to 182976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,604 DEBUG Processing 780/843 atomic regions from SNP 233837 to 234437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,642 DEBUG Processing 766/872 atomic regions from SNP 229691 to 230291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,709 DEBUG Processing 214/227 atomic regions from SNP 64146 to 64747 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:12,716 DEBUG Processing 654/1007 atomic regions from SNP 196183 to 196783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,775 DEBUG Processing 578/638 atomic regions from SNP 173154 to 173754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,869 DEBUG Processing 781/843 atomic regions from SNP 234137 to 234737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,906 DEBUG Processing 609/1117 atomic regions from SNP 182676 to 183276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,911 DEBUG Processing 767/872 atomic regions from SNP 229991 to 230591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,959 DEBUG Processing 215/227 atomic regions from SNP 64447 to 65048 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,013 DEBUG Processing 655/1007 atomic regions from SNP 196483 to 197083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,033 DEBUG Processing 579/638 atomic regions from SNP 173454 to 174054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,136 DEBUG Processing 782/843 atomic regions from SNP 234437 to 235037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,183 DEBUG Processing 768/872 atomic regions from SNP 230291 to 230891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,216 DEBUG Processing 610/1117 atomic regions from SNP 182976 to 183576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,222 DEBUG Processing 216/227 atomic regions from SNP 64748 to 65349 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,297 DEBUG Processing 580/638 atomic regions from SNP 173754 to 174354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,300 DEBUG Processing 656/1007 atomic regions from SNP 196783 to 197383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,390 DEBUG Processing 783/843 atomic regions from SNP 234737 to 235337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,457 DEBUG Processing 769/872 atomic regions from SNP 230591 to 231191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,482 DEBUG Processing 217/227 atomic regions from SNP 65049 to 65650 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,527 DEBUG Processing 611/1117 atomic regions from SNP 183276 to 183876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,557 DEBUG Processing 581/638 atomic regions from SNP 174054 to 174654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,582 DEBUG Processing 657/1007 atomic regions from SNP 197083 to 197683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,640 DEBUG Processing 784/843 atomic regions from SNP 235037 to 235637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,731 DEBUG Processing 770/872 atomic regions from SNP 230891 to 231491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,737 DEBUG Processing 218/227 atomic regions from SNP 65350 to 65951 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:13,824 DEBUG Processing 582/638 atomic regions from SNP 174354 to 174954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,839 DEBUG Processing 612/1117 atomic regions from SNP 183576 to 184176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,865 DEBUG Processing 658/1007 atomic regions from SNP 197383 to 197983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,892 DEBUG Processing 785/843 atomic regions from SNP 235337 to 235937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,980 DEBUG Processing 219/227 atomic regions from SNP 65651 to 66252 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,002 DEBUG Processing 771/872 atomic regions from SNP 231191 to 231791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,093 DEBUG Processing 583/638 atomic regions from SNP 174654 to 175254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,145 DEBUG Processing 613/1117 atomic regions from SNP 183876 to 184476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,147 DEBUG Processing 786/843 atomic regions from SNP 235637 to 236237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,152 DEBUG Processing 659/1007 atomic regions from SNP 197683 to 198283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,219 DEBUG Processing 220/227 atomic regions from SNP 65952 to 66553 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,267 DEBUG Processing 772/872 atomic regions from SNP 231491 to 232091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,356 DEBUG Processing 584/638 atomic regions from SNP 174954 to 175554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,407 DEBUG Processing 787/843 atomic regions from SNP 235937 to 236537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,448 DEBUG Processing 614/1117 atomic regions from SNP 184176 to 184776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,452 DEBUG Processing 660/1007 atomic regions from SNP 197983 to 198583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,461 DEBUG Processing 221/227 atomic regions from SNP 66253 to 66854 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,526 DEBUG Processing 773/872 atomic regions from SNP 231791 to 232391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,624 DEBUG Processing 585/638 atomic regions from SNP 175254 to 175854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,670 DEBUG Processing 788/843 atomic regions from SNP 236237 to 236837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,707 DEBUG Processing 222/227 atomic regions from SNP 66554 to 67155 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:14,745 DEBUG Processing 661/1007 atomic regions from SNP 198283 to 198883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,745 DEBUG Processing 615/1117 atomic regions from SNP 184476 to 185076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,784 DEBUG Processing 774/872 atomic regions from SNP 232091 to 232691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,888 DEBUG Processing 586/638 atomic regions from SNP 175554 to 176154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,954 DEBUG Processing 789/843 atomic regions from SNP 236537 to 237137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,955 DEBUG Processing 223/227 atomic regions from SNP 66855 to 67456 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,035 DEBUG Processing 662/1007 atomic regions from SNP 198583 to 199183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,041 DEBUG Processing 616/1117 atomic regions from SNP 184776 to 185376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,050 DEBUG Processing 775/872 atomic regions from SNP 232391 to 232991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,172 DEBUG Processing 587/638 atomic regions from SNP 175854 to 176454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,207 DEBUG Processing 224/227 atomic regions from SNP 67156 to 67757 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,234 DEBUG Processing 790/843 atomic regions from SNP 236837 to 237437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,321 DEBUG Processing 776/872 atomic regions from SNP 232691 to 233291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,331 DEBUG Processing 663/1007 atomic regions from SNP 198883 to 199483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,339 DEBUG Processing 617/1117 atomic regions from SNP 185076 to 185676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,460 DEBUG Processing 225/227 atomic regions from SNP 67457 to 68058 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,470 DEBUG Processing 588/638 atomic regions from SNP 176154 to 176754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,518 DEBUG Processing 791/843 atomic regions from SNP 237137 to 237737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,592 DEBUG Processing 777/872 atomic regions from SNP 232991 to 233591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,628 DEBUG Processing 664/1007 atomic regions from SNP 199183 to 199783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,631 DEBUG Processing 618/1117 atomic regions from SNP 185376 to 185976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,721 DEBUG Processing 226/227 atomic regions from SNP 67758 to 68359 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:15,752 DEBUG Processing 589/638 atomic regions from SNP 176454 to 177054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,815 DEBUG Processing 792/843 atomic regions from SNP 237437 to 238037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,858 DEBUG Processing 778/872 atomic regions from SNP 233291 to 233891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,922 DEBUG Processing 619/1117 atomic regions from SNP 185676 to 186276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,928 DEBUG Processing 665/1007 atomic regions from SNP 199483 to 200083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,974 DEBUG Processing 227/227 atomic regions from SNP 68059 to 68660 for chrX (subchromosome 5 of 5). 2025-01-31 09:46:16,035 DEBUG Processing 590/638 atomic regions from SNP 176754 to 177354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,087 DEBUG Processing 793/843 atomic regions from SNP 237737 to 238337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,110 DEBUG Unique SNPs positions in subchromosome 5: 68661 2025-01-31 09:46:16,115 DEBUG Processing 779/872 atomic regions from SNP 233591 to 234191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,215 DEBUG Processing 620/1117 atomic regions from SNP 185976 to 186576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,217 DEBUG Processing 666/1007 atomic regions from SNP 199783 to 200383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,243 DEBUG Subchromosome time: 65.54001269862056, subchromosome SNPs: 68661 2025-01-31 09:46:16,244 DEBUG Estimated BADs: [0.93, 4.66, 1.86, 0.93, 0.00, 1.86, 0.47, 0.93, 9.32, 0.93, 2.80, 0.93, 0.47, 2.80, 0.93, 2.80, 0.93, 2.80, 0.93, 0.23, 0.00, 0.31, 0.93, 9.32] SNP counts: [3855, 3208, 9890, 15544, 47, 5508, 15336, 3751, 159, 34754, 4178, 2708, 22673, 743, 2610, 2072, 10612, 4182, 15775, 14918, 4, 12464, 56161, 36] SNP IDs counts: [3855, 3208, 9890, 15544, 47, 5508, 15336, 3751, 159, 34754, 4178, 2708, 22673, 743, 2610, 2072, 10612, 4182, 15775, 14918, 4, 12464, 56161, 36] Critical gap: 757471bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 9.64Mbp, 15.24Mbp, 26.91Mbp[2.64Mbp], 29.68Mbp[1.45Mbp], 38.92Mbp, 48.26Mbp, 50.55Mbp, 50.64Mbp, 72.90Mbp, 75.67Mbp, 77.42Mbp, 91.31Mbp, 92.04Mbp, 93.62Mbp, 94.83Mbp, 101.21Mbp, 103.63Mbp, 113.34Mbp, 124.25Mbp[0.87Mbp], 125.13Mbp[0.89Mbp], 134.05Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:16,244 DEBUG chrX time: 65.54064316675067 s 2025-01-31 09:46:16,327 DEBUG Processing 591/638 atomic regions from SNP 177054 to 177654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,361 DEBUG Processing 794/843 atomic regions from SNP 238037 to 238637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,381 DEBUG Processing 780/872 atomic regions from SNP 233891 to 234491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,412 DEBUG chrX: Fitting background model for 22 segments 2025-01-31 09:46:16,504 DEBUG Processing 621/1117 atomic regions from SNP 186276 to 186876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,506 DEBUG Processing 667/1007 atomic regions from SNP 200083 to 200683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,625 DEBUG Processing 592/638 atomic regions from SNP 177354 to 177954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,644 DEBUG Processing 795/843 atomic regions from SNP 238337 to 238937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,646 DEBUG Processing 781/872 atomic regions from SNP 234191 to 234791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,795 DEBUG Processing 622/1117 atomic regions from SNP 186576 to 187176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,808 DEBUG Processing 668/1007 atomic regions from SNP 200383 to 200983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,918 DEBUG Processing 782/872 atomic regions from SNP 234491 to 235091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,922 DEBUG Processing 593/638 atomic regions from SNP 177654 to 178254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,935 DEBUG Processing 796/843 atomic regions from SNP 238637 to 239237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,087 DEBUG Processing 623/1117 atomic regions from SNP 186876 to 187476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,125 DEBUG Processing 669/1007 atomic regions from SNP 200683 to 201283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,192 DEBUG Processing 783/872 atomic regions from SNP 234791 to 235391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,213 DEBUG Processing 594/638 atomic regions from SNP 177954 to 178554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,226 DEBUG Processing 797/843 atomic regions from SNP 238937 to 239537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,394 DEBUG Processing 624/1117 atomic regions from SNP 187176 to 187776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,450 DEBUG Processing 670/1007 atomic regions from SNP 200983 to 201583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,463 DEBUG Processing 784/872 atomic regions from SNP 235091 to 235691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,498 DEBUG Processing 595/638 atomic regions from SNP 178254 to 178854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,507 DEBUG Processing 798/843 atomic regions from SNP 239237 to 239837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,700 DEBUG Processing 625/1117 atomic regions from SNP 187476 to 188076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,731 DEBUG Processing 785/872 atomic regions from SNP 235391 to 235991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,773 DEBUG Processing 596/638 atomic regions from SNP 178554 to 179154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,774 DEBUG Processing 799/843 atomic regions from SNP 239537 to 240137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,780 DEBUG Processing 671/1007 atomic regions from SNP 201283 to 201883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,995 DEBUG Processing 786/872 atomic regions from SNP 235691 to 236291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,010 DEBUG Processing 626/1117 atomic regions from SNP 187776 to 188376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,053 DEBUG Processing 597/638 atomic regions from SNP 178854 to 179454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,059 DEBUG Processing 800/843 atomic regions from SNP 239837 to 240437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,109 DEBUG Processing 672/1007 atomic regions from SNP 201583 to 202183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,256 DEBUG Processing 787/872 atomic regions from SNP 235991 to 236591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,326 DEBUG Processing 801/843 atomic regions from SNP 240137 to 240737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,335 DEBUG Processing 627/1117 atomic regions from SNP 188076 to 188676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,346 DEBUG Processing 598/638 atomic regions from SNP 179154 to 179754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,426 DEBUG Processing 673/1007 atomic regions from SNP 201883 to 202483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,517 DEBUG Processing 788/872 atomic regions from SNP 236291 to 236891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,580 DEBUG Processing 802/843 atomic regions from SNP 240437 to 241037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,634 DEBUG Processing 599/638 atomic regions from SNP 179454 to 180054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,643 DEBUG Processing 628/1117 atomic regions from SNP 188376 to 188976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,737 DEBUG Processing 674/1007 atomic regions from SNP 202183 to 202783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,781 DEBUG Processing 789/872 atomic regions from SNP 236591 to 237191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,829 DEBUG Processing 803/843 atomic regions from SNP 240737 to 241337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,915 DEBUG Processing 600/638 atomic regions from SNP 179754 to 180354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,956 DEBUG Processing 629/1117 atomic regions from SNP 188676 to 189276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,044 DEBUG Processing 790/872 atomic regions from SNP 236891 to 237491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,048 DEBUG Processing 675/1007 atomic regions from SNP 202483 to 203083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,086 DEBUG Processing 804/843 atomic regions from SNP 241037 to 241637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,210 DEBUG Processing 601/638 atomic regions from SNP 180054 to 180654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,267 DEBUG Processing 630/1117 atomic regions from SNP 188976 to 189576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,317 DEBUG Processing 791/872 atomic regions from SNP 237191 to 237791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,353 DEBUG Processing 676/1007 atomic regions from SNP 202783 to 203383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,370 DEBUG Processing 805/843 atomic regions from SNP 241337 to 241937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,511 DEBUG Processing 602/638 atomic regions from SNP 180354 to 180954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,575 DEBUG Processing 631/1117 atomic regions from SNP 189276 to 189876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,583 DEBUG Processing 792/872 atomic regions from SNP 237491 to 238091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,663 DEBUG Processing 806/843 atomic regions from SNP 241637 to 242237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,665 DEBUG Processing 677/1007 atomic regions from SNP 203083 to 203683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,796 DEBUG Processing 603/638 atomic regions from SNP 180654 to 181254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,846 DEBUG Processing 793/872 atomic regions from SNP 237791 to 238391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,879 DEBUG Processing 632/1117 atomic regions from SNP 189576 to 190176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,926 DEBUG Processing 807/843 atomic regions from SNP 241937 to 242537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,971 DEBUG Processing 678/1007 atomic regions from SNP 203383 to 203983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,080 DEBUG Processing 604/638 atomic regions from SNP 180954 to 181554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,107 DEBUG Processing 794/872 atomic regions from SNP 238091 to 238691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,177 DEBUG Processing 633/1117 atomic regions from SNP 189876 to 190476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,183 DEBUG Processing 808/843 atomic regions from SNP 242237 to 242837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,262 DEBUG Processing 679/1007 atomic regions from SNP 203683 to 204283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,343 DEBUG Processing 605/638 atomic regions from SNP 181254 to 181854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,371 DEBUG Processing 795/872 atomic regions from SNP 238391 to 238991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,438 DEBUG Processing 809/843 atomic regions from SNP 242537 to 243137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,474 DEBUG Processing 634/1117 atomic regions from SNP 190176 to 190776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,552 DEBUG Processing 680/1007 atomic regions from SNP 203983 to 204583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,606 DEBUG Processing 606/638 atomic regions from SNP 181554 to 182154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,638 DEBUG Processing 796/872 atomic regions from SNP 238691 to 239291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,690 DEBUG Processing 810/843 atomic regions from SNP 242837 to 243437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,774 DEBUG Processing 635/1117 atomic regions from SNP 190476 to 191076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,856 DEBUG Processing 681/1007 atomic regions from SNP 204283 to 204883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,892 DEBUG Processing 607/638 atomic regions from SNP 181854 to 182454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,909 DEBUG Processing 797/872 atomic regions from SNP 238991 to 239591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,971 DEBUG Processing 811/843 atomic regions from SNP 243137 to 243737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,074 DEBUG Processing 636/1117 atomic regions from SNP 190776 to 191376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,148 DEBUG Processing 608/638 atomic regions from SNP 182154 to 182754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,151 DEBUG Processing 682/1007 atomic regions from SNP 204583 to 205183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,180 DEBUG Processing 798/872 atomic regions from SNP 239291 to 239891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,236 DEBUG Processing 812/843 atomic regions from SNP 243437 to 244037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,372 DEBUG Processing 637/1117 atomic regions from SNP 191076 to 191676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,408 DEBUG Processing 609/638 atomic regions from SNP 182454 to 183054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,454 DEBUG Processing 683/1007 atomic regions from SNP 204883 to 205483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,454 DEBUG Processing 799/872 atomic regions from SNP 239591 to 240191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,496 DEBUG Processing 813/843 atomic regions from SNP 243737 to 244337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,674 DEBUG Processing 610/638 atomic regions from SNP 182754 to 183354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,678 DEBUG Processing 638/1117 atomic regions from SNP 191376 to 191976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,728 DEBUG Processing 800/872 atomic regions from SNP 239891 to 240491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,766 DEBUG Processing 684/1007 atomic regions from SNP 205183 to 205783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,776 DEBUG Processing 814/843 atomic regions from SNP 244037 to 244637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,951 DEBUG Processing 611/638 atomic regions from SNP 183054 to 183654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,994 DEBUG Processing 639/1117 atomic regions from SNP 191676 to 192276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,997 DEBUG Processing 801/872 atomic regions from SNP 240191 to 240791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,080 DEBUG Processing 685/1007 atomic regions from SNP 205483 to 206083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,081 DEBUG Processing 815/843 atomic regions from SNP 244337 to 244937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,244 DEBUG Processing 612/638 atomic regions from SNP 183354 to 183954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,263 DEBUG Processing 802/872 atomic regions from SNP 240491 to 241091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,302 DEBUG Processing 640/1117 atomic regions from SNP 191976 to 192576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,354 DEBUG Processing 816/843 atomic regions from SNP 244637 to 245237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,402 DEBUG Processing 686/1007 atomic regions from SNP 205783 to 206383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,524 DEBUG Processing 803/872 atomic regions from SNP 240791 to 241391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,551 DEBUG Processing 613/638 atomic regions from SNP 183654 to 184254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,612 DEBUG Processing 641/1117 atomic regions from SNP 192276 to 192876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,613 DEBUG Processing 817/843 atomic regions from SNP 244937 to 245537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,702 DEBUG Processing 687/1007 atomic regions from SNP 206083 to 206683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,788 DEBUG Processing 804/872 atomic regions from SNP 241091 to 241691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,845 DEBUG Processing 614/638 atomic regions from SNP 183954 to 184554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,877 DEBUG Processing 818/843 atomic regions from SNP 245237 to 245837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,923 DEBUG Processing 642/1117 atomic regions from SNP 192576 to 193176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,001 DEBUG Processing 688/1007 atomic regions from SNP 206383 to 206983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,048 DEBUG Processing 805/872 atomic regions from SNP 241391 to 241991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,136 DEBUG Processing 615/638 atomic regions from SNP 184254 to 184854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,138 DEBUG Processing 819/843 atomic regions from SNP 245537 to 246137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,245 DEBUG Processing 643/1117 atomic regions from SNP 192876 to 193476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,290 DEBUG Processing 689/1007 atomic regions from SNP 206683 to 207283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,311 DEBUG Processing 806/872 atomic regions from SNP 241691 to 242291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,394 DEBUG Processing 820/843 atomic regions from SNP 245837 to 246437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,407 DEBUG Processing 616/638 atomic regions from SNP 184554 to 185154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,566 DEBUG Processing 644/1117 atomic regions from SNP 193176 to 193776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,575 DEBUG Processing 807/872 atomic regions from SNP 241991 to 242591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,597 DEBUG Processing 690/1007 atomic regions from SNP 206983 to 207583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,660 DEBUG Processing 821/843 atomic regions from SNP 246137 to 246737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,675 DEBUG Processing 617/638 atomic regions from SNP 184854 to 185454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,838 DEBUG Processing 808/872 atomic regions from SNP 242291 to 242891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,876 DEBUG Processing 645/1117 atomic regions from SNP 193476 to 194076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,905 DEBUG Processing 691/1007 atomic regions from SNP 207283 to 207883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,911 DEBUG Processing 822/843 atomic regions from SNP 246437 to 247037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,944 DEBUG Processing 618/638 atomic regions from SNP 185154 to 185754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,099 DEBUG Processing 809/872 atomic regions from SNP 242591 to 243191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,164 DEBUG Processing 823/843 atomic regions from SNP 246737 to 247337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,182 DEBUG Processing 646/1117 atomic regions from SNP 193776 to 194376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,208 DEBUG Processing 619/638 atomic regions from SNP 185454 to 186054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,212 DEBUG Processing 692/1007 atomic regions from SNP 207583 to 208183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,368 DEBUG Processing 810/872 atomic regions from SNP 242891 to 243491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,420 DEBUG Processing 824/843 atomic regions from SNP 247037 to 247637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,475 DEBUG Processing 620/638 atomic regions from SNP 185754 to 186354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,491 DEBUG Processing 647/1117 atomic regions from SNP 194076 to 194676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,500 DEBUG Processing 693/1007 atomic regions from SNP 207883 to 208483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,629 DEBUG Processing 811/872 atomic regions from SNP 243191 to 243791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,681 DEBUG Processing 825/843 atomic regions from SNP 247337 to 247937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,751 DEBUG Processing 621/638 atomic regions from SNP 186054 to 186654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,795 DEBUG Processing 694/1007 atomic regions from SNP 208183 to 208783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,804 DEBUG Processing 648/1117 atomic regions from SNP 194376 to 194976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,891 DEBUG Processing 812/872 atomic regions from SNP 243491 to 244091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,942 DEBUG Processing 826/843 atomic regions from SNP 247637 to 248237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,014 DEBUG Processing 622/638 atomic regions from SNP 186354 to 186954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,076 DEBUG Processing 695/1007 atomic regions from SNP 208483 to 209083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,110 DEBUG Processing 649/1117 atomic regions from SNP 194676 to 195276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,156 DEBUG Processing 813/872 atomic regions from SNP 243791 to 244391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,212 DEBUG Processing 827/843 atomic regions from SNP 247937 to 248537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,286 DEBUG Processing 623/638 atomic regions from SNP 186654 to 187254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,352 DEBUG Processing 696/1007 atomic regions from SNP 208783 to 209383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,415 DEBUG Processing 650/1117 atomic regions from SNP 194976 to 195576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,423 DEBUG Processing 814/872 atomic regions from SNP 244091 to 244691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,496 DEBUG Processing 828/843 atomic regions from SNP 248237 to 248837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,559 DEBUG Processing 624/638 atomic regions from SNP 186954 to 187554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,634 DEBUG Processing 697/1007 atomic regions from SNP 209083 to 209683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,695 DEBUG Processing 815/872 atomic regions from SNP 244391 to 244991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,725 DEBUG Processing 651/1117 atomic regions from SNP 195276 to 195876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,777 DEBUG Processing 829/843 atomic regions from SNP 248537 to 249137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,841 DEBUG Processing 625/638 atomic regions from SNP 187254 to 187854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,922 DEBUG Processing 698/1007 atomic regions from SNP 209383 to 209983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,962 DEBUG Processing 816/872 atomic regions from SNP 244691 to 245291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,032 DEBUG Processing 652/1117 atomic regions from SNP 195576 to 196176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,038 DEBUG Processing 830/843 atomic regions from SNP 248837 to 249437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,145 DEBUG Processing 626/638 atomic regions from SNP 187554 to 188154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,216 DEBUG Processing 699/1007 atomic regions from SNP 209683 to 210283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,229 DEBUG Processing 817/872 atomic regions from SNP 244991 to 245591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,289 DEBUG Processing 831/843 atomic regions from SNP 249137 to 249737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,340 DEBUG Processing 653/1117 atomic regions from SNP 195876 to 196476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,442 DEBUG Processing 627/638 atomic regions from SNP 187854 to 188454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,496 DEBUG Processing 818/872 atomic regions from SNP 245291 to 245891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,506 DEBUG Processing 700/1007 atomic regions from SNP 209983 to 210583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,569 DEBUG Processing 832/843 atomic regions from SNP 249437 to 250037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,640 DEBUG Processing 654/1117 atomic regions from SNP 196176 to 196776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,712 DEBUG Processing 628/638 atomic regions from SNP 188154 to 188754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,755 DEBUG Processing 819/872 atomic regions from SNP 245591 to 246191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,800 DEBUG Processing 701/1007 atomic regions from SNP 210283 to 210883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,835 DEBUG Processing 833/843 atomic regions from SNP 249737 to 250337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,936 DEBUG Processing 655/1117 atomic regions from SNP 196476 to 197076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,988 DEBUG Processing 629/638 atomic regions from SNP 188454 to 189054 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,010 DEBUG Processing 820/872 atomic regions from SNP 245891 to 246491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,087 DEBUG Processing 702/1007 atomic regions from SNP 210583 to 211183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,089 DEBUG Processing 834/843 atomic regions from SNP 250037 to 250637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,240 DEBUG Processing 656/1117 atomic regions from SNP 196776 to 197376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,260 DEBUG Processing 630/638 atomic regions from SNP 188754 to 189354 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,271 DEBUG Processing 821/872 atomic regions from SNP 246191 to 246791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,349 DEBUG Processing 835/843 atomic regions from SNP 250337 to 250937 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,377 DEBUG Processing 703/1007 atomic regions from SNP 210883 to 211483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,535 DEBUG Processing 822/872 atomic regions from SNP 246491 to 247091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,553 DEBUG Processing 657/1117 atomic regions from SNP 197076 to 197676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,554 DEBUG Processing 631/638 atomic regions from SNP 189054 to 189654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,632 DEBUG Processing 836/843 atomic regions from SNP 250637 to 251237 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,662 DEBUG Processing 704/1007 atomic regions from SNP 211183 to 211783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,797 DEBUG Processing 823/872 atomic regions from SNP 246791 to 247391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,859 DEBUG Processing 632/638 atomic regions from SNP 189354 to 189954 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,869 DEBUG Processing 658/1117 atomic regions from SNP 197376 to 197976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,904 DEBUG Processing 837/843 atomic regions from SNP 250937 to 251537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,951 DEBUG Processing 705/1007 atomic regions from SNP 211483 to 212083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,052 DEBUG Processing 824/872 atomic regions from SNP 247091 to 247691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,149 DEBUG Processing 633/638 atomic regions from SNP 189654 to 190254 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,174 DEBUG Processing 838/843 atomic regions from SNP 251237 to 251837 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,207 DEBUG Processing 659/1117 atomic regions from SNP 197676 to 198276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,244 DEBUG Processing 706/1007 atomic regions from SNP 211783 to 212383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,311 DEBUG Processing 825/872 atomic regions from SNP 247391 to 247991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,432 DEBUG Processing 839/843 atomic regions from SNP 251537 to 252137 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,437 DEBUG Processing 634/638 atomic regions from SNP 189954 to 190554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,532 DEBUG Processing 707/1007 atomic regions from SNP 212083 to 212683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,557 DEBUG Processing 660/1117 atomic regions from SNP 197976 to 198576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,568 DEBUG Processing 826/872 atomic regions from SNP 247691 to 248291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,691 DEBUG Processing 840/843 atomic regions from SNP 251837 to 252437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,728 DEBUG Processing 635/638 atomic regions from SNP 190254 to 190854 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,819 DEBUG Processing 708/1007 atomic regions from SNP 212383 to 212983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,827 DEBUG Processing 827/872 atomic regions from SNP 247991 to 248591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,864 DEBUG Processing 661/1117 atomic regions from SNP 198276 to 198876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,952 DEBUG Processing 841/843 atomic regions from SNP 252137 to 252737 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,022 DEBUG Processing 636/638 atomic regions from SNP 190554 to 191154 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,083 DEBUG Processing 828/872 atomic regions from SNP 248291 to 248891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,101 DEBUG Processing 709/1007 atomic regions from SNP 212683 to 213283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,168 DEBUG Processing 662/1117 atomic regions from SNP 198576 to 199176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,214 DEBUG Processing 842/843 atomic regions from SNP 252437 to 253037 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,322 DEBUG Processing 637/638 atomic regions from SNP 190854 to 191454 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,337 DEBUG Processing 829/872 atomic regions from SNP 248591 to 249191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,384 DEBUG Processing 710/1007 atomic regions from SNP 212983 to 213583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,476 DEBUG Processing 843/843 atomic regions from SNP 252737 to 253337 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,481 DEBUG Processing 663/1117 atomic regions from SNP 198876 to 199476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,589 DEBUG Processing 830/872 atomic regions from SNP 248891 to 249491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,608 DEBUG Processing 638/638 atomic regions from SNP 191154 to 191754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,615 DEBUG Unique SNPs positions in subchromosome 1: 253338 2025-01-31 09:46:29,683 DEBUG Processing 711/1007 atomic regions from SNP 213283 to 213883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,762 DEBUG Unique SNPs positions in subchromosome 2: 191755 2025-01-31 09:46:29,789 DEBUG Processing 664/1117 atomic regions from SNP 199176 to 199776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,847 DEBUG Processing 831/872 atomic regions from SNP 249191 to 249791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,968 DEBUG Processing 712/1007 atomic regions from SNP 213583 to 214183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,098 DEBUG Processing 665/1117 atomic regions from SNP 199476 to 200076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,107 DEBUG Processing 832/872 atomic regions from SNP 249491 to 250091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,248 DEBUG Processing 713/1007 atomic regions from SNP 213883 to 214483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,368 DEBUG Processing 833/872 atomic regions from SNP 249791 to 250391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,423 DEBUG Processing 666/1117 atomic regions from SNP 199776 to 200376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,521 DEBUG Processing 714/1007 atomic regions from SNP 214183 to 214783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,627 DEBUG Processing 834/872 atomic regions from SNP 250091 to 250691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,761 DEBUG Processing 667/1117 atomic regions from SNP 200076 to 200676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,793 DEBUG Processing 715/1007 atomic regions from SNP 214483 to 215083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,889 DEBUG Processing 835/872 atomic regions from SNP 250391 to 250991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,051 DEBUG Processing 668/1117 atomic regions from SNP 200376 to 200976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,067 DEBUG Processing 716/1007 atomic regions from SNP 214783 to 215383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,147 DEBUG Processing 836/872 atomic regions from SNP 250691 to 251291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,344 DEBUG Processing 669/1117 atomic regions from SNP 200676 to 201276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,350 DEBUG Processing 717/1007 atomic regions from SNP 215083 to 215683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,402 DEBUG Processing 837/872 atomic regions from SNP 250991 to 251591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,634 DEBUG Processing 718/1007 atomic regions from SNP 215383 to 215983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,657 DEBUG Processing 670/1117 atomic regions from SNP 200976 to 201576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,662 DEBUG Processing 838/872 atomic regions from SNP 251291 to 251891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,923 DEBUG Processing 839/872 atomic regions from SNP 251591 to 252191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,930 DEBUG Processing 719/1007 atomic regions from SNP 215683 to 216283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,978 DEBUG Processing 671/1117 atomic regions from SNP 201276 to 201876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,184 DEBUG Processing 840/872 atomic regions from SNP 251891 to 252491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,236 DEBUG Processing 720/1007 atomic regions from SNP 215983 to 216583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,286 DEBUG Processing 672/1117 atomic regions from SNP 201576 to 202176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,442 DEBUG Processing 841/872 atomic regions from SNP 252191 to 252791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,541 DEBUG Processing 721/1007 atomic regions from SNP 216283 to 216883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,575 DEBUG Processing 673/1117 atomic regions from SNP 201876 to 202476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,695 DEBUG Processing 842/872 atomic regions from SNP 252491 to 253091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,844 DEBUG Processing 722/1007 atomic regions from SNP 216583 to 217183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,861 DEBUG Processing 674/1117 atomic regions from SNP 202176 to 202776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,955 DEBUG Processing 843/872 atomic regions from SNP 252791 to 253391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,146 DEBUG Processing 723/1007 atomic regions from SNP 216883 to 217483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,153 DEBUG Processing 675/1117 atomic regions from SNP 202476 to 203076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,219 DEBUG Processing 844/872 atomic regions from SNP 253091 to 253691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,431 DEBUG Processing 724/1007 atomic regions from SNP 217183 to 217783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,449 DEBUG Processing 676/1117 atomic regions from SNP 202776 to 203376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,481 DEBUG Processing 845/872 atomic regions from SNP 253391 to 253991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,718 DEBUG Processing 725/1007 atomic regions from SNP 217483 to 218083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,745 DEBUG Processing 677/1117 atomic regions from SNP 203076 to 203676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,745 DEBUG Processing 846/872 atomic regions from SNP 253691 to 254291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,009 DEBUG Processing 847/872 atomic regions from SNP 253991 to 254591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,009 DEBUG Processing 726/1007 atomic regions from SNP 217783 to 218383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,047 DEBUG Processing 678/1117 atomic regions from SNP 203376 to 203976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,275 DEBUG Processing 848/872 atomic regions from SNP 254291 to 254891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,311 DEBUG Processing 727/1007 atomic regions from SNP 218083 to 218683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,355 DEBUG Processing 679/1117 atomic regions from SNP 203676 to 204276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,540 DEBUG Processing 849/872 atomic regions from SNP 254591 to 255191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,615 DEBUG Processing 728/1007 atomic regions from SNP 218383 to 218983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,666 DEBUG Processing 680/1117 atomic regions from SNP 203976 to 204576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,798 DEBUG Processing 850/872 atomic regions from SNP 254891 to 255491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,914 DEBUG Processing 729/1007 atomic regions from SNP 218683 to 219283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,982 DEBUG Processing 681/1117 atomic regions from SNP 204276 to 204876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,054 DEBUG Processing 851/872 atomic regions from SNP 255191 to 255791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,215 DEBUG Processing 730/1007 atomic regions from SNP 218983 to 219583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,291 DEBUG Processing 682/1117 atomic regions from SNP 204576 to 205176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,311 DEBUG Processing 852/872 atomic regions from SNP 255491 to 256091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,527 DEBUG Processing 731/1007 atomic regions from SNP 219283 to 219883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,561 DEBUG Processing 853/872 atomic regions from SNP 255791 to 256391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,601 DEBUG Processing 683/1117 atomic regions from SNP 204876 to 205476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,816 DEBUG Processing 854/872 atomic regions from SNP 256091 to 256691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,826 DEBUG Processing 732/1007 atomic regions from SNP 219583 to 220183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,899 DEBUG Processing 684/1117 atomic regions from SNP 205176 to 205776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,069 DEBUG Processing 855/872 atomic regions from SNP 256391 to 256991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,127 DEBUG Processing 733/1007 atomic regions from SNP 219883 to 220483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,199 DEBUG Processing 685/1117 atomic regions from SNP 205476 to 206076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,324 DEBUG Processing 856/872 atomic regions from SNP 256691 to 257291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,405 DEBUG Processing 734/1007 atomic regions from SNP 220183 to 220783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,492 DEBUG Processing 686/1117 atomic regions from SNP 205776 to 206376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,582 DEBUG Processing 857/872 atomic regions from SNP 256991 to 257591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,693 DEBUG Processing 735/1007 atomic regions from SNP 220483 to 221083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,789 DEBUG Processing 687/1117 atomic regions from SNP 206076 to 206676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,829 DEBUG Processing 858/872 atomic regions from SNP 257291 to 257891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,979 DEBUG Processing 736/1007 atomic regions from SNP 220783 to 221383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,075 DEBUG Processing 859/872 atomic regions from SNP 257591 to 258191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,083 DEBUG Processing 688/1117 atomic regions from SNP 206376 to 206976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,277 DEBUG Processing 737/1007 atomic regions from SNP 221083 to 221683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,333 DEBUG Processing 860/872 atomic regions from SNP 257891 to 258491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,372 DEBUG Processing 689/1117 atomic regions from SNP 206676 to 207276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,553 DEBUG Processing 738/1007 atomic regions from SNP 221383 to 221983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,594 DEBUG Processing 861/872 atomic regions from SNP 258191 to 258791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,662 DEBUG Processing 690/1117 atomic regions from SNP 206976 to 207576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,866 DEBUG Processing 862/872 atomic regions from SNP 258491 to 259091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,866 DEBUG Processing 739/1007 atomic regions from SNP 221683 to 222283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,957 DEBUG Processing 691/1117 atomic regions from SNP 207276 to 207876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,137 DEBUG Processing 863/872 atomic regions from SNP 258791 to 259391 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,183 DEBUG Processing 740/1007 atomic regions from SNP 221983 to 222583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,255 DEBUG Processing 692/1117 atomic regions from SNP 207576 to 208176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,400 DEBUG Processing 864/872 atomic regions from SNP 259091 to 259691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,498 DEBUG Processing 741/1007 atomic regions from SNP 222283 to 222883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,562 DEBUG Processing 693/1117 atomic regions from SNP 207876 to 208476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,658 DEBUG Processing 865/872 atomic regions from SNP 259391 to 259991 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,806 DEBUG Processing 742/1007 atomic regions from SNP 222583 to 223183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,860 DEBUG Processing 694/1117 atomic regions from SNP 208176 to 208776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,908 DEBUG Processing 866/872 atomic regions from SNP 259691 to 260291 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,089 DEBUG Processing 743/1007 atomic regions from SNP 222883 to 223483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,153 DEBUG Processing 695/1117 atomic regions from SNP 208476 to 209076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,160 DEBUG Processing 867/872 atomic regions from SNP 259991 to 260591 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,394 DEBUG Processing 744/1007 atomic regions from SNP 223183 to 223783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,414 DEBUG Processing 868/872 atomic regions from SNP 260291 to 260891 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,451 DEBUG Processing 696/1117 atomic regions from SNP 208776 to 209376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,672 DEBUG Processing 869/872 atomic regions from SNP 260591 to 261191 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,720 DEBUG Processing 745/1007 atomic regions from SNP 223483 to 224083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,752 DEBUG Processing 697/1117 atomic regions from SNP 209076 to 209676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,926 DEBUG Processing 870/872 atomic regions from SNP 260891 to 261491 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,010 DEBUG Processing 746/1007 atomic regions from SNP 223783 to 224383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,049 DEBUG Processing 698/1117 atomic regions from SNP 209376 to 209976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,181 DEBUG Processing 871/872 atomic regions from SNP 261191 to 261791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,286 DEBUG Processing 747/1007 atomic regions from SNP 224083 to 224683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,346 DEBUG Processing 699/1117 atomic regions from SNP 209676 to 210276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,439 DEBUG Processing 872/872 atomic regions from SNP 261491 to 262091 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,568 DEBUG Processing 748/1007 atomic regions from SNP 224383 to 224983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,579 DEBUG Unique SNPs positions in subchromosome 1: 262092 2025-01-31 09:46:40,644 DEBUG Processing 700/1117 atomic regions from SNP 209976 to 210576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,846 DEBUG Processing 749/1007 atomic regions from SNP 224683 to 225283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,942 DEBUG Processing 701/1117 atomic regions from SNP 210276 to 210876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,132 DEBUG Processing 750/1007 atomic regions from SNP 224983 to 225583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,264 DEBUG Processing 702/1117 atomic regions from SNP 210576 to 211176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,427 DEBUG Processing 751/1007 atomic regions from SNP 225283 to 225883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,574 DEBUG Processing 703/1117 atomic regions from SNP 210876 to 211476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,728 DEBUG Processing 752/1007 atomic regions from SNP 225583 to 226183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,878 DEBUG Processing 704/1117 atomic regions from SNP 211176 to 211776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,013 DEBUG Processing 753/1007 atomic regions from SNP 225883 to 226483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,189 DEBUG Processing 705/1117 atomic regions from SNP 211476 to 212076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,323 DEBUG Processing 754/1007 atomic regions from SNP 226183 to 226783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,509 DEBUG Processing 706/1117 atomic regions from SNP 211776 to 212376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,604 DEBUG Processing 755/1007 atomic regions from SNP 226483 to 227083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,809 DEBUG Processing 707/1117 atomic regions from SNP 212076 to 212676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,880 DEBUG Processing 756/1007 atomic regions from SNP 226783 to 227383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,097 DEBUG Processing 708/1117 atomic regions from SNP 212376 to 212976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,164 DEBUG Processing 757/1007 atomic regions from SNP 227083 to 227683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,388 DEBUG Processing 709/1117 atomic regions from SNP 212676 to 213276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,456 DEBUG Processing 758/1007 atomic regions from SNP 227383 to 227983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,689 DEBUG Processing 710/1117 atomic regions from SNP 212976 to 213576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,743 DEBUG Processing 759/1007 atomic regions from SNP 227683 to 228283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,983 DEBUG Processing 711/1117 atomic regions from SNP 213276 to 213876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,032 DEBUG Processing 760/1007 atomic regions from SNP 227983 to 228583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,278 DEBUG Processing 712/1117 atomic regions from SNP 213576 to 214176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,325 DEBUG Processing 761/1007 atomic regions from SNP 228283 to 228883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,575 DEBUG Processing 713/1117 atomic regions from SNP 213876 to 214476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,622 DEBUG Processing 762/1007 atomic regions from SNP 228583 to 229183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,868 DEBUG Processing 714/1117 atomic regions from SNP 214176 to 214776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,917 DEBUG Processing 763/1007 atomic regions from SNP 228883 to 229483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,162 DEBUG Processing 715/1117 atomic regions from SNP 214476 to 215076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,211 DEBUG Processing 764/1007 atomic regions from SNP 229183 to 229783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,466 DEBUG Processing 716/1117 atomic regions from SNP 214776 to 215376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,506 DEBUG Processing 765/1007 atomic regions from SNP 229483 to 230083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,793 DEBUG Processing 717/1117 atomic regions from SNP 215076 to 215676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,800 DEBUG Processing 766/1007 atomic regions from SNP 229783 to 230383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,088 DEBUG Processing 767/1007 atomic regions from SNP 230083 to 230683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,125 DEBUG Processing 718/1117 atomic regions from SNP 215376 to 215976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,376 DEBUG Processing 768/1007 atomic regions from SNP 230383 to 230983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,434 DEBUG Processing 719/1117 atomic regions from SNP 215676 to 216276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,611 DEBUG Subchromosome time: 220.30544479191303, subchromosome SNPs: 191755 2025-01-31 09:46:46,611 DEBUG Estimated BADs: [1.44, 0.48, 1.44, 0.48, 1.44, 0.48, 4.33, 4.33, 1.44, 0.24, 0.72, 1.44, 4.33, 1.44, 0.36, 0.72, 1.44, 0.21, 0.72, 1.44, 2.89, 0.24, 0.72, 10.11, 0.72, 4.33, 2.89, 5.78, 2.89, 5.78, 1.44, 4.33, 1.44, 4.33] SNP counts: [6120, 2782, 11956, 27665, 3936, 8538, 3027, 7986, 4657, 3396, 4802, 7752, 1276, 4773, 27909, 9191, 5200, 4786, 8499, 16180, 6582, 5344, 1714, 251, 1024, 6332, 21595, 8721, 8336, 1873, 7534, 8342, 3299, 4401] SNP IDs counts: [6120, 2782, 11956, 27665, 3936, 8538, 3027, 7986, 4657, 3396, 4802, 7752, 1276, 4773, 27909, 9191, 5200, 4786, 8499, 16180, 6582, 5344, 1714, 251, 1024, 6332, 21595, 8721, 8336, 1873, 7534, 8342, 3299, 4401] Critical gap: 692547bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 6.90Mbp, 8.64Mbp, 15.56Mbp, 32.59Mbp, 34.77Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 47.05Mbp, 49.69Mbp, 51.80Mbp, 54.59Mbp, 58.89Mbp, 59.57Mbp, 63.97Mbp, 81.34Mbp, 86.57Mbp, 89.59Mbp, 92.72Mbp, 97.75Mbp, 106.73Mbp, 110.30Mbp, 113.99Mbp, 114.99Mbp, 115.12Mbp, 115.82Mbp, 119.23Mbp, 131.72Mbp, 136.31Mbp, 140.68Mbp, 141.66Mbp, 147.85Mbp, 152.21Mbp, 153.94Mbp, 156.51Mbp] 2025-01-31 09:46:46,611 DEBUG chr4 time: 220.30603339895606 s 2025-01-31 09:46:46,664 DEBUG Processing 769/1007 atomic regions from SNP 230683 to 231283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,743 DEBUG Processing 720/1117 atomic regions from SNP 215976 to 216576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,773 DEBUG chr4: Fitting background model for 34 segments 2025-01-31 09:46:46,953 DEBUG Processing 770/1007 atomic regions from SNP 230983 to 231583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,042 DEBUG Processing 721/1117 atomic regions from SNP 216276 to 216876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,242 DEBUG Processing 771/1007 atomic regions from SNP 231283 to 231883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,349 DEBUG Processing 722/1117 atomic regions from SNP 216576 to 217176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,524 DEBUG Processing 772/1007 atomic regions from SNP 231583 to 232183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,655 DEBUG Processing 723/1117 atomic regions from SNP 216876 to 217476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,813 DEBUG Processing 773/1007 atomic regions from SNP 231883 to 232483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,958 DEBUG Processing 724/1117 atomic regions from SNP 217176 to 217776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,106 DEBUG Processing 774/1007 atomic regions from SNP 232183 to 232783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,266 DEBUG Processing 725/1117 atomic regions from SNP 217476 to 218076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,391 DEBUG Processing 775/1007 atomic regions from SNP 232483 to 233083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,584 DEBUG Processing 726/1117 atomic regions from SNP 217776 to 218376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,669 DEBUG Processing 776/1007 atomic regions from SNP 232783 to 233383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,874 DEBUG Processing 727/1117 atomic regions from SNP 218076 to 218676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,947 DEBUG Processing 777/1007 atomic regions from SNP 233083 to 233683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,169 DEBUG Processing 728/1117 atomic regions from SNP 218376 to 218976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,224 DEBUG Processing 778/1007 atomic regions from SNP 233383 to 233983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,463 DEBUG Processing 729/1117 atomic regions from SNP 218676 to 219276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,502 DEBUG Processing 779/1007 atomic regions from SNP 233683 to 234283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,762 DEBUG Processing 730/1117 atomic regions from SNP 218976 to 219576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,784 DEBUG Processing 780/1007 atomic regions from SNP 233983 to 234583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,065 DEBUG Processing 731/1117 atomic regions from SNP 219276 to 219876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,073 DEBUG Processing 781/1007 atomic regions from SNP 234283 to 234883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,363 DEBUG Processing 782/1007 atomic regions from SNP 234583 to 235183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,372 DEBUG Processing 732/1117 atomic regions from SNP 219576 to 220176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,642 DEBUG Processing 783/1007 atomic regions from SNP 234883 to 235483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,697 DEBUG Processing 733/1117 atomic regions from SNP 219876 to 220476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,924 DEBUG Processing 784/1007 atomic regions from SNP 235183 to 235783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,018 DEBUG Processing 734/1117 atomic regions from SNP 220176 to 220776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,205 DEBUG Processing 785/1007 atomic regions from SNP 235483 to 236083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,349 DEBUG Processing 735/1117 atomic regions from SNP 220476 to 221076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,487 DEBUG Processing 786/1007 atomic regions from SNP 235783 to 236383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,678 DEBUG Processing 736/1117 atomic regions from SNP 220776 to 221376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,773 DEBUG Processing 787/1007 atomic regions from SNP 236083 to 236683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,991 DEBUG Processing 737/1117 atomic regions from SNP 221076 to 221676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,049 DEBUG Processing 788/1007 atomic regions from SNP 236383 to 236983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,321 DEBUG Processing 789/1007 atomic regions from SNP 236683 to 237283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,326 DEBUG Processing 738/1117 atomic regions from SNP 221376 to 221976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,598 DEBUG Processing 790/1007 atomic regions from SNP 236983 to 237583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,641 DEBUG Processing 739/1117 atomic regions from SNP 221676 to 222276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,812 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:46:52,884 DEBUG Processing 791/1007 atomic regions from SNP 237283 to 237883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,966 DEBUG Processing 740/1117 atomic regions from SNP 221976 to 222576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,171 DEBUG Processing 792/1007 atomic regions from SNP 237583 to 238183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,302 DEBUG Processing 741/1117 atomic regions from SNP 222276 to 222876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,451 DEBUG Processing 793/1007 atomic regions from SNP 237883 to 238483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,474 DEBUG Subchromosome time: 295.28004628419876, subchromosome SNPs: 253338 2025-01-31 09:46:53,474 DEBUG Estimated BADs: [1.42, 0.36, 1.42, 4.26, 1.42, 2.84, 0.24, 0.71, 0.36, 1.42, 0.24, 1.42, 0.28, 1.42, 0.24, 0.71, 1.42, 0.71, 11.37, 2.84, 0.71, 4.26, 1.42, 5.68, 1.42, 5.68, 1.42, 7.10, 0.71, 4.26, 2.84] SNP counts: [4666, 22023, 4482, 3943, 8008, 15899, 3907, 8083, 8713, 6002, 14106, 9607, 4468, 11429, 8682, 14422, 6291, 10745, 360, 9306, 1420, 974, 6004, 3295, 8643, 9950, 7884, 541, 7541, 17986, 13958] SNP IDs counts: [4666, 22023, 4482, 3943, 8008, 15899, 3907, 8083, 8713, 6002, 14106, 9607, 4468, 11429, 8682, 14422, 6291, 10745, 360, 9306, 1420, 974, 6004, 3295, 8643, 9950, 7884, 541, 7541, 17986, 13958] Critical gap: 678855bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.76Mbp, 20.83Mbp, 23.40Mbp, 25.54Mbp, 30.23Mbp, 38.87Mbp, 41.23Mbp, 46.00Mbp, 51.12Mbp, 54.36Mbp, 63.36Mbp, 68.68Mbp, 71.56Mbp, 77.84Mbp, 83.37Mbp, 91.96Mbp, 97.68Mbp, 103.65Mbp, 103.84Mbp, 109.17Mbp, 110.09Mbp, 110.61Mbp, 113.78Mbp, 115.52Mbp, 120.09Mbp, 125.41Mbp, 129.71Mbp, 130.05Mbp, 134.17Mbp, 143.97Mbp, 151.83Mbp] 2025-01-31 09:46:53,474 DEBUG chr5 time: 295.28076296299696 s 2025-01-31 09:46:53,630 DEBUG Processing 742/1117 atomic regions from SNP 222576 to 223176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,636 DEBUG chr5: Fitting background model for 31 segments 2025-01-31 09:46:53,743 DEBUG Processing 794/1007 atomic regions from SNP 238183 to 238783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,972 DEBUG Processing 743/1117 atomic regions from SNP 222876 to 223476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,040 DEBUG Processing 795/1007 atomic regions from SNP 238483 to 239083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,312 DEBUG Processing 744/1117 atomic regions from SNP 223176 to 223776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,331 DEBUG Processing 796/1007 atomic regions from SNP 238783 to 239383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,621 DEBUG Processing 797/1007 atomic regions from SNP 239083 to 239683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,634 DEBUG Processing 745/1117 atomic regions from SNP 223476 to 224076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,913 DEBUG Processing 798/1007 atomic regions from SNP 239383 to 239983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,945 DEBUG Processing 746/1117 atomic regions from SNP 223776 to 224376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,199 DEBUG Processing 799/1007 atomic regions from SNP 239683 to 240283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,264 DEBUG Processing 747/1117 atomic regions from SNP 224076 to 224676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,485 DEBUG Processing 800/1007 atomic regions from SNP 239983 to 240583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,600 DEBUG Processing 748/1117 atomic regions from SNP 224376 to 224976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,772 DEBUG Processing 801/1007 atomic regions from SNP 240283 to 240883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,916 DEBUG Processing 749/1117 atomic regions from SNP 224676 to 225276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,057 DEBUG Processing 802/1007 atomic regions from SNP 240583 to 241183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,214 DEBUG Processing 750/1117 atomic regions from SNP 224976 to 225576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,344 DEBUG Processing 803/1007 atomic regions from SNP 240883 to 241483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,506 DEBUG Processing 751/1117 atomic regions from SNP 225276 to 225876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,628 DEBUG Processing 804/1007 atomic regions from SNP 241183 to 241783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,823 DEBUG Processing 752/1117 atomic regions from SNP 225576 to 226176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,912 DEBUG Processing 805/1007 atomic regions from SNP 241483 to 242083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,159 DEBUG Processing 753/1117 atomic regions from SNP 225876 to 226476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,203 DEBUG Processing 806/1007 atomic regions from SNP 241783 to 242383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,556 DEBUG Processing 807/1007 atomic regions from SNP 242083 to 242683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,564 DEBUG Processing 754/1117 atomic regions from SNP 226176 to 226776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,857 DEBUG Processing 808/1007 atomic regions from SNP 242383 to 242983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,899 DEBUG Processing 755/1117 atomic regions from SNP 226476 to 227076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,142 DEBUG Processing 809/1007 atomic regions from SNP 242683 to 243283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,229 DEBUG Processing 756/1117 atomic regions from SNP 226776 to 227376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,433 DEBUG Processing 810/1007 atomic regions from SNP 242983 to 243583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,564 DEBUG Processing 757/1117 atomic regions from SNP 227076 to 227676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,720 DEBUG Processing 811/1007 atomic regions from SNP 243283 to 243883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,875 DEBUG Processing 758/1117 atomic regions from SNP 227376 to 227976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,011 DEBUG Processing 812/1007 atomic regions from SNP 243583 to 244183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,200 DEBUG Processing 759/1117 atomic regions from SNP 227676 to 228276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,301 DEBUG Processing 813/1007 atomic regions from SNP 243883 to 244483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,488 DEBUG Subchromosome time: 301.6031960248947, subchromosome SNPs: 262092 2025-01-31 09:46:59,488 DEBUG Estimated BADs: [0.34, 1.35, 0.68, 13.51, 0.45, 2.70, 0.68, 1.35, 0.68, 13.51, 1.35, 0.45, 1.35, 4.05, 10.81, 1.35, 12.16, 2.70, 4.05, 0.45, 4.05, 0.68, 4.05, 0.68, 2.70, 0.68, 5.41, 1.35, 0.17, 0.68, 0.17, 1.35, 0.17, 1.35, 0.17] SNP counts: [9285, 2256, 7493, 107, 6452, 1339, 13541, 13489, 22615, 813, 33591, 13530, 7821, 7164, 4801, 5690, 4206, 6324, 16773, 8989, 3893, 6644, 5070, 2692, 14704, 2770, 1430, 5547, 3740, 8705, 6920, 6275, 3002, 1817, 2604] SNP IDs counts: [9285, 2256, 7493, 107, 6452, 1339, 13541, 13489, 22615, 813, 33591, 13530, 7821, 7164, 4801, 5690, 4206, 6324, 16773, 8989, 3893, 6644, 5070, 2692, 14704, 2770, 1430, 5547, 3740, 8705, 6920, 6275, 3002, 1817, 2604] Critical gap: 704277bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.86Mbp, 10.13Mbp, 14.87Mbp, 14.93Mbp, 19.15Mbp, 19.89Mbp, 28.16Mbp, 35.92Mbp, 51.15Mbp, 51.58Mbp, 71.20Mbp, 79.51Mbp, 84.02Mbp, 87.88Mbp, 90.47Mbp, 94.37Mbp, 96.72Mbp, 100.41Mbp, 109.51Mbp, 115.21Mbp, 117.38Mbp, 121.16Mbp, 123.86Mbp, 125.43Mbp, 133.61Mbp, 135.28Mbp, 136.05Mbp, 139.18Mbp, 141.97Mbp, 146.96Mbp, 151.51Mbp, 155.02Mbp, 157.05Mbp, 158.09Mbp, 160.04Mbp] 2025-01-31 09:46:59,488 DEBUG chr3 time: 301.60392547398806 s 2025-01-31 09:46:59,497 DEBUG Processing 760/1117 atomic regions from SNP 227976 to 228576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,590 DEBUG Processing 814/1007 atomic regions from SNP 244183 to 244783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,656 DEBUG chr3: Fitting background model for 35 segments 2025-01-31 09:46:59,811 DEBUG Processing 761/1117 atomic regions from SNP 228276 to 228876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,872 DEBUG Processing 815/1007 atomic regions from SNP 244483 to 245083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,122 DEBUG Processing 762/1117 atomic regions from SNP 228576 to 229176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,160 DEBUG Processing 816/1007 atomic regions from SNP 244783 to 245383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,426 DEBUG Processing 763/1117 atomic regions from SNP 228876 to 229476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,457 DEBUG Processing 817/1007 atomic regions from SNP 245083 to 245683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,739 DEBUG Processing 818/1007 atomic regions from SNP 245383 to 245983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,754 DEBUG Processing 764/1117 atomic regions from SNP 229176 to 229776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,008 DEBUG Processing 819/1007 atomic regions from SNP 245683 to 246283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,084 DEBUG Processing 765/1117 atomic regions from SNP 229476 to 230076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,313 DEBUG Processing 820/1007 atomic regions from SNP 245983 to 246583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,422 DEBUG Processing 766/1117 atomic regions from SNP 229776 to 230376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,593 DEBUG Processing 821/1007 atomic regions from SNP 246283 to 246883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,755 DEBUG Processing 767/1117 atomic regions from SNP 230076 to 230676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,871 DEBUG Processing 822/1007 atomic regions from SNP 246583 to 247183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,071 DEBUG Processing 768/1117 atomic regions from SNP 230376 to 230976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,158 DEBUG Processing 823/1007 atomic regions from SNP 246883 to 247483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,387 DEBUG Processing 769/1117 atomic regions from SNP 230676 to 231276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,441 DEBUG Processing 824/1007 atomic regions from SNP 247183 to 247783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,689 DEBUG Processing 770/1117 atomic regions from SNP 230976 to 231576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,724 DEBUG Processing 825/1007 atomic regions from SNP 247483 to 248083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,989 DEBUG Processing 771/1117 atomic regions from SNP 231276 to 231876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,009 DEBUG Processing 826/1007 atomic regions from SNP 247783 to 248383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,294 DEBUG Processing 772/1117 atomic regions from SNP 231576 to 232176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,294 DEBUG Processing 827/1007 atomic regions from SNP 248083 to 248683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,577 DEBUG Processing 828/1007 atomic regions from SNP 248383 to 248983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,594 DEBUG Processing 773/1117 atomic regions from SNP 231876 to 232476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,862 DEBUG Processing 829/1007 atomic regions from SNP 248683 to 249283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,890 DEBUG Processing 774/1117 atomic regions from SNP 232176 to 232776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,147 DEBUG Processing 830/1007 atomic regions from SNP 248983 to 249583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,185 DEBUG Processing 775/1117 atomic regions from SNP 232476 to 233076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,425 DEBUG Processing 831/1007 atomic regions from SNP 249283 to 249883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,474 DEBUG Processing 776/1117 atomic regions from SNP 232776 to 233376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,701 DEBUG Processing 832/1007 atomic regions from SNP 249583 to 250183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,768 DEBUG Processing 777/1117 atomic regions from SNP 233076 to 233676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,977 DEBUG Processing 833/1007 atomic regions from SNP 249883 to 250483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,073 DEBUG Processing 778/1117 atomic regions from SNP 233376 to 233976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,255 DEBUG Processing 834/1007 atomic regions from SNP 250183 to 250783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,383 DEBUG Processing 779/1117 atomic regions from SNP 233676 to 234276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,531 DEBUG Processing 835/1007 atomic regions from SNP 250483 to 251083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,689 DEBUG Processing 780/1117 atomic regions from SNP 233976 to 234576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,812 DEBUG Processing 836/1007 atomic regions from SNP 250783 to 251383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,989 DEBUG Processing 781/1117 atomic regions from SNP 234276 to 234876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,097 DEBUG Processing 837/1007 atomic regions from SNP 251083 to 251683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,276 DEBUG Processing 782/1117 atomic regions from SNP 234576 to 235176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,380 DEBUG Processing 838/1007 atomic regions from SNP 251383 to 251983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,571 DEBUG Processing 783/1117 atomic regions from SNP 234876 to 235476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,665 DEBUG Processing 839/1007 atomic regions from SNP 251683 to 252283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,881 DEBUG Processing 784/1117 atomic regions from SNP 235176 to 235776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,943 DEBUG Processing 840/1007 atomic regions from SNP 251983 to 252583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,192 DEBUG Processing 785/1117 atomic regions from SNP 235476 to 236076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,226 DEBUG Processing 841/1007 atomic regions from SNP 252283 to 252883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,489 DEBUG Processing 786/1117 atomic regions from SNP 235776 to 236376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,517 DEBUG Processing 842/1007 atomic regions from SNP 252583 to 253183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,814 DEBUG Processing 787/1117 atomic regions from SNP 236076 to 236676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,825 DEBUG Processing 843/1007 atomic regions from SNP 252883 to 253483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,117 DEBUG Processing 788/1117 atomic regions from SNP 236376 to 236976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,126 DEBUG Processing 844/1007 atomic regions from SNP 253183 to 253783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,413 DEBUG Processing 845/1007 atomic regions from SNP 253483 to 254083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,414 DEBUG Processing 789/1117 atomic regions from SNP 236676 to 237276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,690 DEBUG Processing 846/1007 atomic regions from SNP 253783 to 254383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,708 DEBUG Processing 790/1117 atomic regions from SNP 236976 to 237576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,960 DEBUG Processing 847/1007 atomic regions from SNP 254083 to 254683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,011 DEBUG Processing 791/1117 atomic regions from SNP 237276 to 237876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,243 DEBUG Processing 848/1007 atomic regions from SNP 254383 to 254983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,317 DEBUG Processing 792/1117 atomic regions from SNP 237576 to 238176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,532 DEBUG Processing 849/1007 atomic regions from SNP 254683 to 255283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,618 DEBUG Processing 793/1117 atomic regions from SNP 237876 to 238476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,822 DEBUG Processing 850/1007 atomic regions from SNP 254983 to 255583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,918 DEBUG Processing 794/1117 atomic regions from SNP 238176 to 238776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,130 DEBUG Processing 851/1007 atomic regions from SNP 255283 to 255883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,239 DEBUG Processing 795/1117 atomic regions from SNP 238476 to 239076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,487 DEBUG Processing 852/1007 atomic regions from SNP 255583 to 256183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,565 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:47:10,567 DEBUG chr6: Signal quantile: 0.991. signal threshold: 10. Best RMSEA: 0.013 2025-01-31 09:47:10,574 DEBUG Processing 796/1117 atomic regions from SNP 238776 to 239376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,812 DEBUG Processing 853/1007 atomic regions from SNP 255883 to 256483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,880 DEBUG Processing 797/1117 atomic regions from SNP 239076 to 239676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,118 DEBUG Processing 854/1007 atomic regions from SNP 256183 to 256783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,186 DEBUG Processing 798/1117 atomic regions from SNP 239376 to 239976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,413 DEBUG Processing 855/1007 atomic regions from SNP 256483 to 257083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,494 DEBUG Processing 799/1117 atomic regions from SNP 239676 to 240276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,698 DEBUG Processing 856/1007 atomic regions from SNP 256783 to 257383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,804 DEBUG Processing 800/1117 atomic regions from SNP 239976 to 240576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,992 DEBUG Processing 857/1007 atomic regions from SNP 257083 to 257683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,113 DEBUG Processing 801/1117 atomic regions from SNP 240276 to 240876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,277 DEBUG Processing 858/1007 atomic regions from SNP 257383 to 257983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,417 DEBUG Processing 802/1117 atomic regions from SNP 240576 to 241176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,558 DEBUG Processing 859/1007 atomic regions from SNP 257683 to 258283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,732 DEBUG Processing 803/1117 atomic regions from SNP 240876 to 241476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,845 DEBUG Processing 860/1007 atomic regions from SNP 257983 to 258583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,039 DEBUG Processing 804/1117 atomic regions from SNP 241176 to 241776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,148 DEBUG Processing 861/1007 atomic regions from SNP 258283 to 258883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,340 DEBUG Processing 805/1117 atomic regions from SNP 241476 to 242076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,446 DEBUG chr6 total SNP count: 252328 2025-01-31 09:47:13,446 DEBUG chr6 length: 149736546 2025-01-31 09:47:13,447 DEBUG ----------------------------------------- 2025-01-31 09:47:13,447 INFO Processing SNPs in chr6 2025-01-31 09:47:13,448 DEBUG Processing 862/1007 atomic regions from SNP 258583 to 259183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,651 DEBUG Processing 806/1117 atomic regions from SNP 241776 to 242376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,728 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 252328)] 2025-01-31 09:47:13,737 DEBUG Processing 863/1007 atomic regions from SNP 258883 to 259483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,917 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:13,959 DEBUG Processing 807/1117 atomic regions from SNP 242076 to 242676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,026 DEBUG Processing 864/1007 atomic regions from SNP 259183 to 259783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,271 DEBUG Processing 808/1117 atomic regions from SNP 242376 to 242976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,317 DEBUG Processing 865/1007 atomic regions from SNP 259483 to 260083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,568 DEBUG Processing 809/1117 atomic regions from SNP 242676 to 243276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,615 DEBUG Processing 866/1007 atomic regions from SNP 259783 to 260383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,885 DEBUG Processing 810/1117 atomic regions from SNP 242976 to 243576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,924 DEBUG Processing 867/1007 atomic regions from SNP 260083 to 260683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,198 DEBUG Processing 811/1117 atomic regions from SNP 243276 to 243876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,242 DEBUG Processing 868/1007 atomic regions from SNP 260383 to 260983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,505 DEBUG Processing 812/1117 atomic regions from SNP 243576 to 244176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,565 DEBUG Processing 869/1007 atomic regions from SNP 260683 to 261283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,804 DEBUG Processing 813/1117 atomic regions from SNP 243876 to 244476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,865 DEBUG Processing 870/1007 atomic regions from SNP 260983 to 261583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,122 DEBUG Processing 814/1117 atomic regions from SNP 244176 to 244776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,186 DEBUG Processing 871/1007 atomic regions from SNP 261283 to 261883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,426 DEBUG Processing 815/1117 atomic regions from SNP 244476 to 245076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,489 DEBUG Processing 872/1007 atomic regions from SNP 261583 to 262183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,725 DEBUG Processing 816/1117 atomic regions from SNP 244776 to 245376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,779 DEBUG Processing 873/1007 atomic regions from SNP 261883 to 262483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,028 DEBUG Processing 817/1117 atomic regions from SNP 245076 to 245676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,088 DEBUG Processing 874/1007 atomic regions from SNP 262183 to 262783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,329 DEBUG Processing 818/1117 atomic regions from SNP 245376 to 245976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,398 DEBUG Processing 875/1007 atomic regions from SNP 262483 to 263083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,624 DEBUG Processing 819/1117 atomic regions from SNP 245676 to 246276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,722 DEBUG Processing 876/1007 atomic regions from SNP 262783 to 263383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,935 DEBUG Processing 820/1117 atomic regions from SNP 245976 to 246576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,026 DEBUG Processing 877/1007 atomic regions from SNP 263083 to 263683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,231 DEBUG Processing 821/1117 atomic regions from SNP 246276 to 246876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,318 DEBUG Processing 878/1007 atomic regions from SNP 263383 to 263983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,526 DEBUG Processing 822/1117 atomic regions from SNP 246576 to 247176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,604 DEBUG Processing 879/1007 atomic regions from SNP 263683 to 264283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,818 DEBUG Processing 823/1117 atomic regions from SNP 246876 to 247476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,888 DEBUG Processing 880/1007 atomic regions from SNP 263983 to 264583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,116 DEBUG Processing 824/1117 atomic regions from SNP 247176 to 247776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,183 DEBUG Processing 881/1007 atomic regions from SNP 264283 to 264883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,411 DEBUG Processing 825/1117 atomic regions from SNP 247476 to 248076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,494 DEBUG Processing 882/1007 atomic regions from SNP 264583 to 265183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,715 DEBUG Processing 826/1117 atomic regions from SNP 247776 to 248376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,811 DEBUG Processing 883/1007 atomic regions from SNP 264883 to 265483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,018 DEBUG Processing 827/1117 atomic regions from SNP 248076 to 248676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,111 DEBUG Processing 884/1007 atomic regions from SNP 265183 to 265783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,323 DEBUG Processing 828/1117 atomic regions from SNP 248376 to 248976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,418 DEBUG Processing 885/1007 atomic regions from SNP 265483 to 266083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,632 DEBUG Processing 829/1117 atomic regions from SNP 248676 to 249276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,724 DEBUG Processing 886/1007 atomic regions from SNP 265783 to 266383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,937 DEBUG Processing 830/1117 atomic regions from SNP 248976 to 249576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,018 DEBUG Processing 887/1007 atomic regions from SNP 266083 to 266683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,250 DEBUG Processing 831/1117 atomic regions from SNP 249276 to 249876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,322 DEBUG Processing 888/1007 atomic regions from SNP 266383 to 266983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,541 DEBUG Processing 832/1117 atomic regions from SNP 249576 to 250176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,631 DEBUG Processing 889/1007 atomic regions from SNP 266683 to 267283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,841 DEBUG Processing 833/1117 atomic regions from SNP 249876 to 250476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,950 DEBUG Processing 890/1007 atomic regions from SNP 266983 to 267583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,146 DEBUG Processing 834/1117 atomic regions from SNP 250176 to 250776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,253 DEBUG Processing 891/1007 atomic regions from SNP 267283 to 267883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,449 DEBUG Processing 835/1117 atomic regions from SNP 250476 to 251076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,566 DEBUG Processing 892/1007 atomic regions from SNP 267583 to 268183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,757 DEBUG Processing 836/1117 atomic regions from SNP 250776 to 251376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,867 DEBUG Processing 893/1007 atomic regions from SNP 267883 to 268483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,064 DEBUG Processing 837/1117 atomic regions from SNP 251076 to 251676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,163 DEBUG Processing 894/1007 atomic regions from SNP 268183 to 268783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,375 DEBUG Processing 838/1117 atomic regions from SNP 251376 to 251976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,465 DEBUG Processing 895/1007 atomic regions from SNP 268483 to 269083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,684 DEBUG Processing 839/1117 atomic regions from SNP 251676 to 252276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,782 DEBUG Processing 896/1007 atomic regions from SNP 268783 to 269383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,004 DEBUG Processing 840/1117 atomic regions from SNP 251976 to 252576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,086 DEBUG Processing 897/1007 atomic regions from SNP 269083 to 269683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,314 DEBUG Processing 841/1117 atomic regions from SNP 252276 to 252876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,381 DEBUG Processing 898/1007 atomic regions from SNP 269383 to 269983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,617 DEBUG Processing 842/1117 atomic regions from SNP 252576 to 253176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,681 DEBUG Processing 899/1007 atomic regions from SNP 269683 to 270283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,919 DEBUG Processing 843/1117 atomic regions from SNP 252876 to 253476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,998 DEBUG Processing 900/1007 atomic regions from SNP 269983 to 270583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,231 DEBUG Processing 844/1117 atomic regions from SNP 253176 to 253776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,324 DEBUG Processing 901/1007 atomic regions from SNP 270283 to 270883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,547 DEBUG Processing 845/1117 atomic regions from SNP 253476 to 254076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,626 DEBUG Processing 902/1007 atomic regions from SNP 270583 to 271183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,855 DEBUG Processing 846/1117 atomic regions from SNP 253776 to 254376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,924 DEBUG Processing 903/1007 atomic regions from SNP 270883 to 271483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,168 DEBUG Processing 847/1117 atomic regions from SNP 254076 to 254676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,237 DEBUG Processing 904/1007 atomic regions from SNP 271183 to 271783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,487 DEBUG Processing 848/1117 atomic regions from SNP 254376 to 254976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,553 DEBUG Processing 905/1007 atomic regions from SNP 271483 to 272083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,813 DEBUG Processing 849/1117 atomic regions from SNP 254676 to 255276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,866 DEBUG Processing 906/1007 atomic regions from SNP 271783 to 272383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,147 DEBUG Processing 850/1117 atomic regions from SNP 254976 to 255576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,179 DEBUG Processing 907/1007 atomic regions from SNP 272083 to 272683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,481 DEBUG Processing 851/1117 atomic regions from SNP 255276 to 255876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,485 DEBUG Processing 908/1007 atomic regions from SNP 272383 to 272983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,778 DEBUG Processing 909/1007 atomic regions from SNP 272683 to 273283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,820 DEBUG Processing 852/1117 atomic regions from SNP 255576 to 256176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,072 DEBUG Processing 910/1007 atomic regions from SNP 272983 to 273583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,142 DEBUG Processing 853/1117 atomic regions from SNP 255876 to 256476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,363 DEBUG Processing 911/1007 atomic regions from SNP 273283 to 273883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,458 DEBUG Processing 854/1117 atomic regions from SNP 256176 to 256776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,649 DEBUG Processing 912/1007 atomic regions from SNP 273583 to 274183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,765 DEBUG Processing 855/1117 atomic regions from SNP 256476 to 257076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,941 DEBUG Processing 913/1007 atomic regions from SNP 273883 to 274483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,075 DEBUG Processing 856/1117 atomic regions from SNP 256776 to 257376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,249 DEBUG Processing 914/1007 atomic regions from SNP 274183 to 274783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,376 DEBUG Processing 857/1117 atomic regions from SNP 257076 to 257676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,539 DEBUG Processing 915/1007 atomic regions from SNP 274483 to 275083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,690 DEBUG Processing 858/1117 atomic regions from SNP 257376 to 257976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,828 DEBUG Processing 916/1007 atomic regions from SNP 274783 to 275383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,014 DEBUG Processing 859/1117 atomic regions from SNP 257676 to 258276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,122 DEBUG Processing 917/1007 atomic regions from SNP 275083 to 275683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,328 DEBUG Processing 860/1117 atomic regions from SNP 257976 to 258576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,420 DEBUG Processing 918/1007 atomic regions from SNP 275383 to 275983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,648 DEBUG Processing 861/1117 atomic regions from SNP 258276 to 258876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,718 DEBUG Processing 919/1007 atomic regions from SNP 275683 to 276283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,982 DEBUG Processing 862/1117 atomic regions from SNP 258576 to 259176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,019 DEBUG Processing 920/1007 atomic regions from SNP 275983 to 276583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,299 DEBUG Processing 863/1117 atomic regions from SNP 258876 to 259476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,321 DEBUG Processing 921/1007 atomic regions from SNP 276283 to 276883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,610 DEBUG Processing 864/1117 atomic regions from SNP 259176 to 259776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,614 DEBUG Processing 922/1007 atomic regions from SNP 276583 to 277183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,907 DEBUG Processing 923/1007 atomic regions from SNP 276883 to 277483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,932 DEBUG Processing 865/1117 atomic regions from SNP 259476 to 260076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,195 DEBUG Processing 924/1007 atomic regions from SNP 277183 to 277783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,241 DEBUG Processing 866/1117 atomic regions from SNP 259776 to 260376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,480 DEBUG Processing 925/1007 atomic regions from SNP 277483 to 278083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,546 DEBUG Processing 867/1117 atomic regions from SNP 260076 to 260676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,762 DEBUG Processing 926/1007 atomic regions from SNP 277783 to 278383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,858 DEBUG Processing 868/1117 atomic regions from SNP 260376 to 260976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,046 DEBUG Processing 927/1007 atomic regions from SNP 278083 to 278683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,165 DEBUG Processing 869/1117 atomic regions from SNP 260676 to 261276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,336 DEBUG Processing 928/1007 atomic regions from SNP 278383 to 278983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,473 DEBUG Processing 870/1117 atomic regions from SNP 260976 to 261576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,625 DEBUG Processing 929/1007 atomic regions from SNP 278683 to 279283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,789 DEBUG Processing 871/1117 atomic regions from SNP 261276 to 261876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,911 DEBUG Processing 930/1007 atomic regions from SNP 278983 to 279583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,102 DEBUG Processing 872/1117 atomic regions from SNP 261576 to 262176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,205 DEBUG Processing 931/1007 atomic regions from SNP 279283 to 279883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,415 DEBUG Processing 873/1117 atomic regions from SNP 261876 to 262476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,504 DEBUG Processing 932/1007 atomic regions from SNP 279583 to 280183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,732 DEBUG Processing 874/1117 atomic regions from SNP 262176 to 262776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,806 DEBUG Processing 933/1007 atomic regions from SNP 279883 to 280483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,073 DEBUG Processing 875/1117 atomic regions from SNP 262476 to 263076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,126 DEBUG Processing 934/1007 atomic regions from SNP 280183 to 280783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,414 DEBUG Processing 876/1117 atomic regions from SNP 262776 to 263376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,436 DEBUG Processing 935/1007 atomic regions from SNP 280483 to 281083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,739 DEBUG Processing 877/1117 atomic regions from SNP 263076 to 263676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,765 DEBUG Processing 936/1007 atomic regions from SNP 280783 to 281383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,076 DEBUG Processing 878/1117 atomic regions from SNP 263376 to 263976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,083 DEBUG Processing 937/1007 atomic regions from SNP 281083 to 281683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,402 DEBUG Processing 879/1117 atomic regions from SNP 263676 to 264276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,413 DEBUG Processing 938/1007 atomic regions from SNP 281383 to 281983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,727 DEBUG Processing 939/1007 atomic regions from SNP 281683 to 282283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,728 DEBUG Processing 880/1117 atomic regions from SNP 263976 to 264576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,033 DEBUG Processing 940/1007 atomic regions from SNP 281983 to 282583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,079 DEBUG Processing 881/1117 atomic regions from SNP 264276 to 264876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,349 DEBUG Processing 941/1007 atomic regions from SNP 282283 to 282883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,425 DEBUG Processing 882/1117 atomic regions from SNP 264576 to 265176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,652 DEBUG Processing 942/1007 atomic regions from SNP 282583 to 283183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,743 DEBUG Processing 883/1117 atomic regions from SNP 264876 to 265476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,980 DEBUG Processing 943/1007 atomic regions from SNP 282883 to 283483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,088 DEBUG Processing 884/1117 atomic regions from SNP 265176 to 265776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,287 DEBUG Processing 944/1007 atomic regions from SNP 283183 to 283783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,433 DEBUG Processing 885/1117 atomic regions from SNP 265476 to 266076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,617 DEBUG Processing 945/1007 atomic regions from SNP 283483 to 284083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,791 DEBUG Processing 886/1117 atomic regions from SNP 265776 to 266376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,946 DEBUG Processing 946/1007 atomic regions from SNP 283783 to 284383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,139 DEBUG Processing 887/1117 atomic regions from SNP 266076 to 266676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,256 DEBUG Processing 947/1007 atomic regions from SNP 284083 to 284683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,462 DEBUG Processing 888/1117 atomic regions from SNP 266376 to 266976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,554 DEBUG Processing 948/1007 atomic regions from SNP 284383 to 284983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,775 DEBUG Processing 889/1117 atomic regions from SNP 266676 to 267276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,869 DEBUG Processing 949/1007 atomic regions from SNP 284683 to 285283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,087 DEBUG Processing 890/1117 atomic regions from SNP 266976 to 267576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,172 DEBUG Processing 950/1007 atomic regions from SNP 284983 to 285583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,412 DEBUG Processing 891/1117 atomic regions from SNP 267276 to 267876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,475 DEBUG Processing 951/1007 atomic regions from SNP 285283 to 285883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,738 DEBUG Processing 892/1117 atomic regions from SNP 267576 to 268176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,804 DEBUG Processing 952/1007 atomic regions from SNP 285583 to 286183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,063 DEBUG Processing 893/1117 atomic regions from SNP 267876 to 268476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,125 DEBUG Processing 953/1007 atomic regions from SNP 285883 to 286483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,379 DEBUG Processing 894/1117 atomic regions from SNP 268176 to 268776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,430 DEBUG Processing 954/1007 atomic regions from SNP 286183 to 286783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,698 DEBUG Processing 895/1117 atomic regions from SNP 268476 to 269076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,734 DEBUG Processing 955/1007 atomic regions from SNP 286483 to 287083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,023 DEBUG Processing 896/1117 atomic regions from SNP 268776 to 269376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,042 DEBUG Processing 956/1007 atomic regions from SNP 286783 to 287383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,357 DEBUG Processing 897/1117 atomic regions from SNP 269076 to 269676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,358 DEBUG Processing 957/1007 atomic regions from SNP 287083 to 287683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,677 DEBUG Processing 958/1007 atomic regions from SNP 287383 to 287983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,686 DEBUG Processing 898/1117 atomic regions from SNP 269376 to 269976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,012 DEBUG Processing 899/1117 atomic regions from SNP 269676 to 270276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,019 DEBUG Processing 959/1007 atomic regions from SNP 287683 to 288283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,328 DEBUG Processing 900/1117 atomic regions from SNP 269976 to 270576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,351 DEBUG Processing 960/1007 atomic regions from SNP 287983 to 288583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,662 DEBUG Processing 901/1117 atomic regions from SNP 270276 to 270876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,670 DEBUG Processing 961/1007 atomic regions from SNP 288283 to 288883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,982 DEBUG Processing 902/1117 atomic regions from SNP 270576 to 271176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,006 DEBUG Processing 962/1007 atomic regions from SNP 288583 to 289183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,306 DEBUG Processing 903/1117 atomic regions from SNP 270876 to 271476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,356 DEBUG Processing 963/1007 atomic regions from SNP 288883 to 289483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,639 DEBUG Processing 904/1117 atomic regions from SNP 271176 to 271776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,694 DEBUG Processing 964/1007 atomic regions from SNP 289183 to 289783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,969 DEBUG Processing 905/1117 atomic regions from SNP 271476 to 272076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,024 DEBUG Processing 965/1007 atomic regions from SNP 289483 to 290083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,302 DEBUG Processing 906/1117 atomic regions from SNP 271776 to 272376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,348 DEBUG Processing 966/1007 atomic regions from SNP 289783 to 290383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,389 DEBUG Segmenting atomic regions: 2025-01-31 09:47:45,517 DEBUG Processing 1/840 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,648 DEBUG Processing 907/1117 atomic regions from SNP 272076 to 272676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,654 DEBUG Processing 967/1007 atomic regions from SNP 290083 to 290683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,794 DEBUG Processing 2/840 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,958 DEBUG Processing 968/1007 atomic regions from SNP 290383 to 290983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,974 DEBUG Processing 908/1117 atomic regions from SNP 272376 to 272976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,066 DEBUG Processing 3/840 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,280 DEBUG Processing 969/1007 atomic regions from SNP 290683 to 291283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,307 DEBUG Processing 909/1117 atomic regions from SNP 272676 to 273276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,342 DEBUG Processing 4/840 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,584 DEBUG Processing 970/1007 atomic regions from SNP 290983 to 291583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,612 DEBUG Processing 5/840 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,654 DEBUG Processing 910/1117 atomic regions from SNP 272976 to 273576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,880 DEBUG Processing 971/1007 atomic regions from SNP 291283 to 291883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,881 DEBUG Processing 6/840 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,996 DEBUG Processing 911/1117 atomic regions from SNP 273276 to 273876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,154 DEBUG Processing 7/840 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,182 DEBUG Processing 972/1007 atomic regions from SNP 291583 to 292183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,345 DEBUG Processing 912/1117 atomic regions from SNP 273576 to 274176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,423 DEBUG Processing 8/840 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,484 DEBUG Processing 973/1007 atomic regions from SNP 291883 to 292483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,695 DEBUG Processing 913/1117 atomic regions from SNP 273876 to 274476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,703 DEBUG Processing 9/840 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,785 DEBUG Processing 974/1007 atomic regions from SNP 292183 to 292783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,982 DEBUG Processing 10/840 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,027 DEBUG Processing 914/1117 atomic regions from SNP 274176 to 274776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,092 DEBUG Processing 975/1007 atomic regions from SNP 292483 to 293083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,276 DEBUG Processing 11/840 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,355 DEBUG Processing 915/1117 atomic regions from SNP 274476 to 275076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,384 DEBUG Processing 976/1007 atomic regions from SNP 292783 to 293383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,545 DEBUG Processing 12/840 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,677 DEBUG Processing 977/1007 atomic regions from SNP 293083 to 293683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,678 DEBUG Processing 916/1117 atomic regions from SNP 274776 to 275376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,829 DEBUG Processing 13/840 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,978 DEBUG Processing 978/1007 atomic regions from SNP 293383 to 293983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,004 DEBUG Processing 917/1117 atomic regions from SNP 275076 to 275676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,112 DEBUG Processing 14/840 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,297 DEBUG Processing 979/1007 atomic regions from SNP 293683 to 294283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,327 DEBUG Processing 918/1117 atomic regions from SNP 275376 to 275976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,381 DEBUG Processing 15/840 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,598 DEBUG Processing 980/1007 atomic regions from SNP 293983 to 294583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,640 DEBUG Processing 919/1117 atomic regions from SNP 275676 to 276276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,649 DEBUG Processing 16/840 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,895 DEBUG Processing 981/1007 atomic regions from SNP 294283 to 294883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,919 DEBUG Processing 17/840 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,956 DEBUG Processing 920/1117 atomic regions from SNP 275976 to 276576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,185 DEBUG Processing 18/840 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,190 DEBUG Processing 982/1007 atomic regions from SNP 294583 to 295183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,290 DEBUG Processing 921/1117 atomic regions from SNP 276276 to 276876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,445 DEBUG Processing 19/840 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,484 DEBUG Processing 983/1007 atomic regions from SNP 294883 to 295483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,622 DEBUG Processing 922/1117 atomic regions from SNP 276576 to 277176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,709 DEBUG Processing 20/840 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,780 DEBUG Processing 984/1007 atomic regions from SNP 295183 to 295783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,931 DEBUG Processing 923/1117 atomic regions from SNP 276876 to 277476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,974 DEBUG Processing 21/840 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,077 DEBUG Processing 985/1007 atomic regions from SNP 295483 to 296083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,245 DEBUG Processing 22/840 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,246 DEBUG Processing 924/1117 atomic regions from SNP 277176 to 277776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,375 DEBUG Processing 986/1007 atomic regions from SNP 295783 to 296383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,511 DEBUG Processing 23/840 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,556 DEBUG Processing 925/1117 atomic regions from SNP 277476 to 278076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,676 DEBUG Processing 987/1007 atomic regions from SNP 296083 to 296683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,783 DEBUG Processing 24/840 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,870 DEBUG Processing 926/1117 atomic regions from SNP 277776 to 278376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,983 DEBUG Processing 988/1007 atomic regions from SNP 296383 to 296983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,050 DEBUG Processing 25/840 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,186 DEBUG Processing 927/1117 atomic regions from SNP 278076 to 278676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,291 DEBUG Processing 989/1007 atomic regions from SNP 296683 to 297283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,336 DEBUG Processing 26/840 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,491 DEBUG Processing 928/1117 atomic regions from SNP 278376 to 278976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,611 DEBUG Processing 990/1007 atomic regions from SNP 296983 to 297583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,639 DEBUG Processing 27/840 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,792 DEBUG Processing 929/1117 atomic regions from SNP 278676 to 279276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,911 DEBUG Processing 991/1007 atomic regions from SNP 297283 to 297883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,912 DEBUG Processing 28/840 atomic regions from SNP 8127 to 8727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,107 DEBUG Processing 930/1117 atomic regions from SNP 278976 to 279576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,170 DEBUG Processing 29/840 atomic regions from SNP 8427 to 9027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,231 DEBUG Processing 992/1007 atomic regions from SNP 297583 to 298183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,423 DEBUG Processing 931/1117 atomic regions from SNP 279276 to 279876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,435 DEBUG Processing 30/840 atomic regions from SNP 8727 to 9327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,552 DEBUG Processing 993/1007 atomic regions from SNP 297883 to 298483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,713 DEBUG Processing 31/840 atomic regions from SNP 9027 to 9627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,742 DEBUG Processing 932/1117 atomic regions from SNP 279576 to 280176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,857 DEBUG Processing 994/1007 atomic regions from SNP 298183 to 298783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,008 DEBUG Processing 32/840 atomic regions from SNP 9327 to 9927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,058 DEBUG Processing 933/1117 atomic regions from SNP 279876 to 280476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,151 DEBUG Processing 995/1007 atomic regions from SNP 298483 to 299083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,282 DEBUG Processing 33/840 atomic regions from SNP 9627 to 10227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,378 DEBUG Processing 934/1117 atomic regions from SNP 280176 to 280776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,470 DEBUG Processing 996/1007 atomic regions from SNP 298783 to 299383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,559 DEBUG Processing 34/840 atomic regions from SNP 9927 to 10527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,694 DEBUG Processing 935/1117 atomic regions from SNP 280476 to 281076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,789 DEBUG Processing 997/1007 atomic regions from SNP 299083 to 299683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,822 DEBUG Processing 35/840 atomic regions from SNP 10227 to 10827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,027 DEBUG Processing 936/1117 atomic regions from SNP 280776 to 281376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,080 DEBUG Processing 36/840 atomic regions from SNP 10527 to 11127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,089 DEBUG Processing 998/1007 atomic regions from SNP 299383 to 299983 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,337 DEBUG Processing 37/840 atomic regions from SNP 10827 to 11427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,358 DEBUG Processing 937/1117 atomic regions from SNP 281076 to 281676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,377 DEBUG Processing 999/1007 atomic regions from SNP 299683 to 300283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,604 DEBUG Processing 38/840 atomic regions from SNP 11127 to 11727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,663 DEBUG Processing 1000/1007 atomic regions from SNP 299983 to 300583 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,685 DEBUG Processing 938/1117 atomic regions from SNP 281376 to 281976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,868 DEBUG Processing 39/840 atomic regions from SNP 11427 to 12027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,952 DEBUG Processing 1001/1007 atomic regions from SNP 300283 to 300883 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,025 DEBUG Processing 939/1117 atomic regions from SNP 281676 to 282276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,133 DEBUG Processing 40/840 atomic regions from SNP 11727 to 12327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,257 DEBUG Processing 1002/1007 atomic regions from SNP 300583 to 301183 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,368 DEBUG Processing 940/1117 atomic regions from SNP 281976 to 282576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,397 DEBUG Processing 41/840 atomic regions from SNP 12027 to 12627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,547 DEBUG Processing 1003/1007 atomic regions from SNP 300883 to 301483 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,676 DEBUG Processing 42/840 atomic regions from SNP 12327 to 12927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,718 DEBUG Processing 941/1117 atomic regions from SNP 282276 to 282876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,846 DEBUG Processing 1004/1007 atomic regions from SNP 301183 to 301783 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,950 DEBUG Processing 43/840 atomic regions from SNP 12627 to 13227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,063 DEBUG Processing 942/1117 atomic regions from SNP 282576 to 283176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,154 DEBUG Processing 1005/1007 atomic regions from SNP 301483 to 302083 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,226 DEBUG Processing 44/840 atomic regions from SNP 12927 to 13527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,399 DEBUG Processing 943/1117 atomic regions from SNP 282876 to 283476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,480 DEBUG Processing 1006/1007 atomic regions from SNP 301783 to 302383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,535 DEBUG Processing 45/840 atomic regions from SNP 13227 to 13827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,783 DEBUG Processing 944/1117 atomic regions from SNP 283176 to 283776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,833 DEBUG Processing 1007/1007 atomic regions from SNP 302083 to 302683 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,867 DEBUG Processing 46/840 atomic regions from SNP 13527 to 14127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,112 DEBUG Unique SNPs positions in subchromosome 1: 302684 2025-01-31 09:47:58,196 DEBUG Processing 945/1117 atomic regions from SNP 283476 to 284076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,285 DEBUG Processing 47/840 atomic regions from SNP 13827 to 14427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,622 DEBUG Processing 946/1117 atomic regions from SNP 283776 to 284376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,648 DEBUG Processing 48/840 atomic regions from SNP 14127 to 14727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,934 DEBUG Processing 49/840 atomic regions from SNP 14427 to 15027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,950 DEBUG Processing 947/1117 atomic regions from SNP 284076 to 284676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,202 DEBUG Processing 50/840 atomic regions from SNP 14727 to 15327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,262 DEBUG Processing 948/1117 atomic regions from SNP 284376 to 284976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,485 DEBUG Processing 51/840 atomic regions from SNP 15027 to 15627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,661 DEBUG Processing 949/1117 atomic regions from SNP 284676 to 285276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,753 DEBUG Processing 52/840 atomic regions from SNP 15327 to 15927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,097 DEBUG Processing 950/1117 atomic regions from SNP 284976 to 285576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,099 DEBUG Processing 53/840 atomic regions from SNP 15627 to 16227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,478 DEBUG Processing 54/840 atomic regions from SNP 15927 to 16527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,508 DEBUG Processing 951/1117 atomic regions from SNP 285276 to 285876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,872 DEBUG Processing 55/840 atomic regions from SNP 16227 to 16827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,945 DEBUG Processing 952/1117 atomic regions from SNP 285576 to 286176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,274 DEBUG Processing 56/840 atomic regions from SNP 16527 to 17127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,418 DEBUG Processing 953/1117 atomic regions from SNP 285876 to 286476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,574 DEBUG Processing 57/840 atomic regions from SNP 16827 to 17427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,741 DEBUG Processing 954/1117 atomic regions from SNP 286176 to 286776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,909 DEBUG Processing 58/840 atomic regions from SNP 17127 to 17727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,081 DEBUG Processing 955/1117 atomic regions from SNP 286476 to 287076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,165 DEBUG Processing 59/840 atomic regions from SNP 17427 to 18027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,420 DEBUG Processing 956/1117 atomic regions from SNP 286776 to 287376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,429 DEBUG Processing 60/840 atomic regions from SNP 17727 to 18327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,693 DEBUG Processing 61/840 atomic regions from SNP 18027 to 18627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,726 DEBUG Processing 957/1117 atomic regions from SNP 287076 to 287676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,959 DEBUG Processing 62/840 atomic regions from SNP 18327 to 18927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,034 DEBUG Processing 958/1117 atomic regions from SNP 287376 to 287976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,227 DEBUG Processing 63/840 atomic regions from SNP 18627 to 19227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,339 DEBUG Processing 959/1117 atomic regions from SNP 287676 to 288276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,495 DEBUG Processing 64/840 atomic regions from SNP 18927 to 19527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,660 DEBUG Processing 960/1117 atomic regions from SNP 287976 to 288576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,764 DEBUG Processing 65/840 atomic regions from SNP 19227 to 19827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,982 DEBUG Processing 961/1117 atomic regions from SNP 288276 to 288876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,079 DEBUG Processing 66/840 atomic regions from SNP 19527 to 20127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,282 DEBUG Processing 962/1117 atomic regions from SNP 288576 to 289176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,351 DEBUG Processing 67/840 atomic regions from SNP 19827 to 20427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,587 DEBUG Processing 963/1117 atomic regions from SNP 288876 to 289476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,621 DEBUG Processing 68/840 atomic regions from SNP 20127 to 20727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,891 DEBUG Processing 69/840 atomic regions from SNP 20427 to 21027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,899 DEBUG Processing 964/1117 atomic regions from SNP 289176 to 289776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,154 DEBUG Processing 70/840 atomic regions from SNP 20727 to 21327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,211 DEBUG Processing 965/1117 atomic regions from SNP 289476 to 290076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,416 DEBUG Processing 71/840 atomic regions from SNP 21027 to 21627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,526 DEBUG Processing 966/1117 atomic regions from SNP 289776 to 290376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,675 DEBUG Processing 72/840 atomic regions from SNP 21327 to 21927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,836 DEBUG Processing 967/1117 atomic regions from SNP 290076 to 290676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,933 DEBUG Processing 73/840 atomic regions from SNP 21627 to 22227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,988 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:48:06,136 DEBUG Processing 968/1117 atomic regions from SNP 290376 to 290976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,192 DEBUG Processing 74/840 atomic regions from SNP 21927 to 22527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,444 DEBUG Processing 969/1117 atomic regions from SNP 290676 to 291276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,460 DEBUG Processing 75/840 atomic regions from SNP 22227 to 22827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,716 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:48:06,726 DEBUG Processing 76/840 atomic regions from SNP 22527 to 23127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,763 DEBUG Processing 970/1117 atomic regions from SNP 290976 to 291576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,990 DEBUG Processing 77/840 atomic regions from SNP 22827 to 23427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,091 DEBUG Processing 971/1117 atomic regions from SNP 291276 to 291876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,251 DEBUG Processing 78/840 atomic regions from SNP 23127 to 23727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,428 DEBUG Processing 972/1117 atomic regions from SNP 291576 to 292176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,512 DEBUG Processing 79/840 atomic regions from SNP 23427 to 24027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,768 DEBUG Processing 973/1117 atomic regions from SNP 291876 to 292476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,779 DEBUG Processing 80/840 atomic regions from SNP 23727 to 24327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,043 DEBUG Processing 81/840 atomic regions from SNP 24027 to 24627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,107 DEBUG Processing 974/1117 atomic regions from SNP 292176 to 292776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,337 DEBUG Processing 82/840 atomic regions from SNP 24327 to 24927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,442 DEBUG Processing 975/1117 atomic regions from SNP 292476 to 293076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,613 DEBUG Processing 83/840 atomic regions from SNP 24627 to 25227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,740 DEBUG Processing 976/1117 atomic regions from SNP 292776 to 293376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,864 DEBUG Processing 84/840 atomic regions from SNP 24927 to 25527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,050 DEBUG Processing 977/1117 atomic regions from SNP 293076 to 293676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,119 DEBUG Processing 85/840 atomic regions from SNP 25227 to 25827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,364 DEBUG Processing 978/1117 atomic regions from SNP 293376 to 293976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,372 DEBUG Processing 86/840 atomic regions from SNP 25527 to 26127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,625 DEBUG Processing 87/840 atomic regions from SNP 25827 to 26427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,688 DEBUG Processing 979/1117 atomic regions from SNP 293676 to 294276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,873 DEBUG Processing 88/840 atomic regions from SNP 26127 to 26727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,025 DEBUG Processing 980/1117 atomic regions from SNP 293976 to 294576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,126 DEBUG Processing 89/840 atomic regions from SNP 26427 to 27027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,349 DEBUG Processing 981/1117 atomic regions from SNP 294276 to 294876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,392 DEBUG Processing 90/840 atomic regions from SNP 26727 to 27327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,712 DEBUG Processing 91/840 atomic regions from SNP 27027 to 27627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,724 DEBUG Processing 982/1117 atomic regions from SNP 294576 to 295176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,093 DEBUG Processing 92/840 atomic regions from SNP 27327 to 27927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,152 DEBUG Processing 983/1117 atomic regions from SNP 294876 to 295476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,489 DEBUG Processing 93/840 atomic regions from SNP 27627 to 28227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,581 DEBUG Processing 984/1117 atomic regions from SNP 295176 to 295776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,818 DEBUG Processing 94/840 atomic regions from SNP 27927 to 28527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,914 DEBUG Processing 985/1117 atomic regions from SNP 295476 to 296076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,199 DEBUG Processing 95/840 atomic regions from SNP 28227 to 28827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,286 DEBUG Processing 986/1117 atomic regions from SNP 295776 to 296376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,582 DEBUG Processing 96/840 atomic regions from SNP 28527 to 29127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,696 DEBUG Processing 987/1117 atomic regions from SNP 296076 to 296676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,845 DEBUG Processing 97/840 atomic regions from SNP 28827 to 29427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,013 DEBUG Processing 988/1117 atomic regions from SNP 296376 to 296976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,097 DEBUG Processing 98/840 atomic regions from SNP 29127 to 29727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,414 DEBUG Processing 989/1117 atomic regions from SNP 296676 to 297276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,436 DEBUG Processing 99/840 atomic regions from SNP 29427 to 30027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,799 DEBUG Processing 100/840 atomic regions from SNP 29727 to 30327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,826 DEBUG Processing 990/1117 atomic regions from SNP 296976 to 297576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,077 DEBUG Processing 101/840 atomic regions from SNP 30027 to 30627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,142 DEBUG Processing 991/1117 atomic regions from SNP 297276 to 297876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,345 DEBUG Processing 102/840 atomic regions from SNP 30327 to 30927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,457 DEBUG Processing 992/1117 atomic regions from SNP 297576 to 298176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,616 DEBUG Processing 103/840 atomic regions from SNP 30627 to 31227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,762 DEBUG Processing 993/1117 atomic regions from SNP 297876 to 298476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,884 DEBUG Processing 104/840 atomic regions from SNP 30927 to 31527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,071 DEBUG Processing 994/1117 atomic regions from SNP 298176 to 298776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,179 DEBUG Processing 105/840 atomic regions from SNP 31227 to 31827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,394 DEBUG Processing 995/1117 atomic regions from SNP 298476 to 299076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,482 DEBUG Processing 106/840 atomic regions from SNP 31527 to 32127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,759 DEBUG Processing 996/1117 atomic regions from SNP 298776 to 299376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,818 DEBUG Processing 107/840 atomic regions from SNP 31827 to 32427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,082 DEBUG Processing 997/1117 atomic regions from SNP 299076 to 299676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,103 DEBUG Processing 108/840 atomic regions from SNP 32127 to 32727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,383 DEBUG Processing 109/840 atomic regions from SNP 32427 to 33027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,404 DEBUG Processing 998/1117 atomic regions from SNP 299376 to 299976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,643 DEBUG Processing 110/840 atomic regions from SNP 32727 to 33327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,709 DEBUG Processing 999/1117 atomic regions from SNP 299676 to 300276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,895 DEBUG Processing 111/840 atomic regions from SNP 33027 to 33627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,005 DEBUG Processing 1000/1117 atomic regions from SNP 299976 to 300576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,150 DEBUG Processing 112/840 atomic regions from SNP 33327 to 33927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,319 DEBUG Processing 1001/1117 atomic regions from SNP 300276 to 300876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,400 DEBUG Processing 113/840 atomic regions from SNP 33627 to 34227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,627 DEBUG Processing 1002/1117 atomic regions from SNP 300576 to 301176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,652 DEBUG Processing 114/840 atomic regions from SNP 33927 to 34527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,906 DEBUG Processing 115/840 atomic regions from SNP 34227 to 34827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,929 DEBUG Processing 1003/1117 atomic regions from SNP 300876 to 301476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,162 DEBUG Processing 116/840 atomic regions from SNP 34527 to 35127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,229 DEBUG Processing 1004/1117 atomic regions from SNP 301176 to 301776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,415 DEBUG Processing 117/840 atomic regions from SNP 34827 to 35427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,538 DEBUG Processing 1005/1117 atomic regions from SNP 301476 to 302076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,655 DEBUG Processing 118/840 atomic regions from SNP 35127 to 35727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,849 DEBUG Processing 1006/1117 atomic regions from SNP 301776 to 302376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,903 DEBUG Processing 119/840 atomic regions from SNP 35427 to 36027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,147 DEBUG Processing 1007/1117 atomic regions from SNP 302076 to 302676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,148 DEBUG Processing 120/840 atomic regions from SNP 35727 to 36327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,403 DEBUG Processing 121/840 atomic regions from SNP 36027 to 36627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,443 DEBUG Processing 1008/1117 atomic regions from SNP 302376 to 302976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,664 DEBUG Processing 122/840 atomic regions from SNP 36327 to 36927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,749 DEBUG Processing 1009/1117 atomic regions from SNP 302676 to 303276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,912 DEBUG Processing 123/840 atomic regions from SNP 36627 to 37227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,047 DEBUG Processing 1010/1117 atomic regions from SNP 302976 to 303576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,159 DEBUG Processing 124/840 atomic regions from SNP 36927 to 37527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,345 DEBUG Processing 1011/1117 atomic regions from SNP 303276 to 303876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,405 DEBUG Processing 125/840 atomic regions from SNP 37227 to 37827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,654 DEBUG Processing 1012/1117 atomic regions from SNP 303576 to 304176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,656 DEBUG Processing 126/840 atomic regions from SNP 37527 to 38127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,903 DEBUG Processing 127/840 atomic regions from SNP 37827 to 38427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,943 DEBUG Processing 1013/1117 atomic regions from SNP 303876 to 304476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,152 DEBUG Processing 128/840 atomic regions from SNP 38127 to 38727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,266 DEBUG Processing 1014/1117 atomic regions from SNP 304176 to 304776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,399 DEBUG Processing 129/840 atomic regions from SNP 38427 to 39027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,591 DEBUG Processing 1015/1117 atomic regions from SNP 304476 to 305076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,651 DEBUG Processing 130/840 atomic regions from SNP 38727 to 39327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,913 DEBUG Processing 131/840 atomic regions from SNP 39027 to 39627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,916 DEBUG Processing 1016/1117 atomic regions from SNP 304776 to 305376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,178 DEBUG Processing 132/840 atomic regions from SNP 39327 to 39927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,221 DEBUG Processing 1017/1117 atomic regions from SNP 305076 to 305676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,371 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:48:22,434 DEBUG Processing 133/840 atomic regions from SNP 39627 to 40227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,520 DEBUG Processing 1018/1117 atomic regions from SNP 305376 to 305976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,697 DEBUG Processing 134/840 atomic regions from SNP 39927 to 40527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,870 DEBUG Processing 1019/1117 atomic regions from SNP 305676 to 306276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,010 DEBUG Processing 135/840 atomic regions from SNP 40227 to 40827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,042 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:48:23,044 DEBUG chr10: Signal quantile: 0.989. signal threshold: 10. Best RMSEA: 0.013 2025-01-31 09:48:23,224 DEBUG Processing 1020/1117 atomic regions from SNP 305976 to 306576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,269 DEBUG Processing 136/840 atomic regions from SNP 40527 to 41127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,526 DEBUG Processing 137/840 atomic regions from SNP 40827 to 41427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,531 DEBUG Processing 1021/1117 atomic regions from SNP 306276 to 306876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,784 DEBUG Processing 138/840 atomic regions from SNP 41127 to 41727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,871 DEBUG Processing 1022/1117 atomic regions from SNP 306576 to 307176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,044 DEBUG Processing 139/840 atomic regions from SNP 41427 to 42027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,213 DEBUG Processing 1023/1117 atomic regions from SNP 306876 to 307476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,296 DEBUG Processing 140/840 atomic regions from SNP 41727 to 42327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,549 DEBUG Processing 1024/1117 atomic regions from SNP 307176 to 307776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,557 DEBUG Processing 141/840 atomic regions from SNP 42027 to 42627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,831 DEBUG Processing 142/840 atomic regions from SNP 42327 to 42927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,862 DEBUG Processing 1025/1117 atomic regions from SNP 307476 to 308076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,093 DEBUG Processing 143/840 atomic regions from SNP 42627 to 43227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,187 DEBUG Processing 1026/1117 atomic regions from SNP 307776 to 308376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,357 DEBUG Processing 144/840 atomic regions from SNP 42927 to 43527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,415 DEBUG chr10 total SNP count: 220874 2025-01-31 09:48:25,415 DEBUG chr10 length: 130694993 2025-01-31 09:48:25,415 DEBUG ----------------------------------------- 2025-01-31 09:48:25,415 INFO Processing SNPs in chr10 2025-01-31 09:48:25,533 DEBUG Processing 1027/1117 atomic regions from SNP 308076 to 308676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,621 DEBUG Processing 145/840 atomic regions from SNP 43227 to 43827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,662 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 220874)] 2025-01-31 09:48:25,826 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:25,872 DEBUG Processing 1028/1117 atomic regions from SNP 308376 to 308976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,900 DEBUG Processing 146/840 atomic regions from SNP 43527 to 44127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,198 DEBUG Processing 147/840 atomic regions from SNP 43827 to 44427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,236 DEBUG Processing 1029/1117 atomic regions from SNP 308676 to 309276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,489 DEBUG Processing 148/840 atomic regions from SNP 44127 to 44727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,591 DEBUG Processing 1030/1117 atomic regions from SNP 308976 to 309576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,778 DEBUG Processing 149/840 atomic regions from SNP 44427 to 45027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,940 DEBUG Processing 1031/1117 atomic regions from SNP 309276 to 309876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,071 DEBUG Processing 150/840 atomic regions from SNP 44727 to 45327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,329 DEBUG Processing 1032/1117 atomic regions from SNP 309576 to 310176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,404 DEBUG Processing 151/840 atomic regions from SNP 45027 to 45627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,773 DEBUG Processing 1033/1117 atomic regions from SNP 309876 to 310476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,788 DEBUG Processing 152/840 atomic regions from SNP 45327 to 45927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,220 DEBUG Processing 153/840 atomic regions from SNP 45627 to 46227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,223 DEBUG Processing 1034/1117 atomic regions from SNP 310176 to 310776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,553 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:48:28,555 DEBUG chr7: Signal quantile: 0.986. signal threshold: 11. Best RMSEA: 0.010 2025-01-31 09:48:28,627 DEBUG Processing 154/840 atomic regions from SNP 45927 to 46527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,671 DEBUG Processing 1035/1117 atomic regions from SNP 310476 to 311076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,902 DEBUG Processing 155/840 atomic regions from SNP 46227 to 46827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,008 DEBUG Processing 1036/1117 atomic regions from SNP 310776 to 311376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,158 DEBUG Processing 156/840 atomic regions from SNP 46527 to 47127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,325 DEBUG Processing 1037/1117 atomic regions from SNP 311076 to 311676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,411 DEBUG Processing 157/840 atomic regions from SNP 46827 to 47427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,615 DEBUG Processing 1038/1117 atomic regions from SNP 311376 to 311976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,693 DEBUG Processing 158/840 atomic regions from SNP 47127 to 47727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,924 DEBUG Processing 1039/1117 atomic regions from SNP 311676 to 312276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,967 DEBUG Processing 159/840 atomic regions from SNP 47427 to 48027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,233 DEBUG Processing 160/840 atomic regions from SNP 47727 to 48327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,240 DEBUG Processing 1040/1117 atomic regions from SNP 311976 to 312576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,523 DEBUG Processing 161/840 atomic regions from SNP 48027 to 48627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,548 DEBUG Processing 1041/1117 atomic regions from SNP 312276 to 312876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,792 DEBUG Processing 162/840 atomic regions from SNP 48327 to 48927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,857 DEBUG Processing 1042/1117 atomic regions from SNP 312576 to 313176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,051 DEBUG Processing 163/840 atomic regions from SNP 48627 to 49227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,175 DEBUG Processing 1043/1117 atomic regions from SNP 312876 to 313476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,253 DEBUG chr7 total SNP count: 228122 2025-01-31 09:48:31,253 DEBUG chr7 length: 145441459 2025-01-31 09:48:31,253 DEBUG ----------------------------------------- 2025-01-31 09:48:31,254 INFO Processing SNPs in chr7 2025-01-31 09:48:31,309 DEBUG Processing 164/840 atomic regions from SNP 48927 to 49527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,486 DEBUG Processing 1044/1117 atomic regions from SNP 313176 to 313776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,564 DEBUG Processing 165/840 atomic regions from SNP 49227 to 49827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,645 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20288), (20288, 20314), (20314, 228122)] 2025-01-31 09:48:31,759 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:31,810 DEBUG Processing 1045/1117 atomic regions from SNP 313476 to 314076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,820 DEBUG Processing 166/840 atomic regions from SNP 49527 to 50127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,072 DEBUG Processing 167/840 atomic regions from SNP 49827 to 50427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,127 DEBUG Processing 1046/1117 atomic regions from SNP 313776 to 314376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,327 DEBUG Processing 168/840 atomic regions from SNP 50127 to 50727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,424 DEBUG Processing 1047/1117 atomic regions from SNP 314076 to 314676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,576 DEBUG Processing 169/840 atomic regions from SNP 50427 to 51027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,715 DEBUG Processing 1048/1117 atomic regions from SNP 314376 to 314976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,820 DEBUG Processing 170/840 atomic regions from SNP 50727 to 51327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,009 DEBUG Processing 1049/1117 atomic regions from SNP 314676 to 315276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,063 DEBUG Processing 171/840 atomic regions from SNP 51027 to 51627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,297 DEBUG Processing 1050/1117 atomic regions from SNP 314976 to 315576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,311 DEBUG Processing 172/840 atomic regions from SNP 51327 to 51927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,564 DEBUG Processing 173/840 atomic regions from SNP 51627 to 52227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,593 DEBUG Processing 1051/1117 atomic regions from SNP 315276 to 315876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,824 DEBUG Processing 174/840 atomic regions from SNP 51927 to 52527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,909 DEBUG Processing 1052/1117 atomic regions from SNP 315576 to 316176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,082 DEBUG Processing 175/840 atomic regions from SNP 52227 to 52827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,219 DEBUG Processing 1053/1117 atomic regions from SNP 315876 to 316476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,275 DEBUG Segmenting atomic regions: 2025-01-31 09:48:34,334 DEBUG Processing 176/840 atomic regions from SNP 52527 to 53127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,387 DEBUG Processing 1/66 atomic regions from SNP 0 to 603 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,545 DEBUG Processing 1054/1117 atomic regions from SNP 316176 to 316776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,601 DEBUG Processing 177/840 atomic regions from SNP 52827 to 53427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,629 DEBUG Processing 2/66 atomic regions from SNP 303 to 906 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,867 DEBUG Processing 3/66 atomic regions from SNP 606 to 1209 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,872 DEBUG Processing 1055/1117 atomic regions from SNP 316476 to 317076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,872 DEBUG Processing 178/840 atomic regions from SNP 53127 to 53727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,129 DEBUG Processing 4/66 atomic regions from SNP 909 to 1512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,148 DEBUG Processing 179/840 atomic regions from SNP 53427 to 54027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,175 DEBUG Processing 1056/1117 atomic regions from SNP 316776 to 317376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,381 DEBUG Processing 5/66 atomic regions from SNP 1212 to 1815 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,406 DEBUG Processing 180/840 atomic regions from SNP 53727 to 54327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,504 DEBUG Processing 1057/1117 atomic regions from SNP 317076 to 317676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,619 DEBUG Processing 6/66 atomic regions from SNP 1515 to 2118 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,682 DEBUG Processing 181/840 atomic regions from SNP 54027 to 54627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,834 DEBUG Processing 1058/1117 atomic regions from SNP 317376 to 317976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,868 DEBUG Processing 7/66 atomic regions from SNP 1818 to 2421 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,941 DEBUG Processing 182/840 atomic regions from SNP 54327 to 54927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,139 DEBUG Processing 8/66 atomic regions from SNP 2121 to 2724 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,150 DEBUG Processing 1059/1117 atomic regions from SNP 317676 to 318276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,206 DEBUG Processing 183/840 atomic regions from SNP 54627 to 55227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,419 DEBUG Processing 9/66 atomic regions from SNP 2424 to 3027 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,453 DEBUG Processing 1060/1117 atomic regions from SNP 317976 to 318576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,486 DEBUG Processing 184/840 atomic regions from SNP 54927 to 55527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,703 DEBUG Processing 10/66 atomic regions from SNP 2727 to 3330 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,755 DEBUG Processing 185/840 atomic regions from SNP 55227 to 55827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,758 DEBUG Processing 1061/1117 atomic regions from SNP 318276 to 318876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,994 DEBUG Processing 11/66 atomic regions from SNP 3030 to 3633 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,038 DEBUG Processing 186/840 atomic regions from SNP 55527 to 56127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,088 DEBUG Processing 1062/1117 atomic regions from SNP 318576 to 319176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,269 DEBUG Processing 12/66 atomic regions from SNP 3333 to 3936 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,365 DEBUG Processing 187/840 atomic regions from SNP 55827 to 56427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,461 DEBUG Processing 1063/1117 atomic regions from SNP 318876 to 319476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,496 DEBUG Processing 13/66 atomic regions from SNP 3636 to 4239 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,628 DEBUG Processing 188/840 atomic regions from SNP 56127 to 56727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,739 DEBUG Processing 14/66 atomic regions from SNP 3939 to 4542 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,769 DEBUG Processing 1064/1117 atomic regions from SNP 319176 to 319776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,887 DEBUG Processing 189/840 atomic regions from SNP 56427 to 57027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,988 DEBUG Processing 15/66 atomic regions from SNP 4242 to 4845 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:38,073 DEBUG Processing 1065/1117 atomic regions from SNP 319476 to 320076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,141 DEBUG Processing 190/840 atomic regions from SNP 56727 to 57327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,266 DEBUG Processing 16/66 atomic regions from SNP 4545 to 5148 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:38,419 DEBUG Processing 1066/1117 atomic regions from SNP 319776 to 320376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,431 DEBUG Processing 191/840 atomic regions from SNP 57027 to 57627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,588 DEBUG Processing 17/66 atomic regions from SNP 4848 to 5451 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:38,778 DEBUG Processing 192/840 atomic regions from SNP 57327 to 57927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,799 DEBUG Processing 1067/1117 atomic regions from SNP 320076 to 320676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,919 DEBUG Processing 18/66 atomic regions from SNP 5151 to 5754 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:39,151 DEBUG Processing 193/840 atomic regions from SNP 57627 to 58227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,207 DEBUG Processing 1068/1117 atomic regions from SNP 320376 to 320976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,239 DEBUG Processing 19/66 atomic regions from SNP 5454 to 6057 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:39,429 DEBUG Processing 194/840 atomic regions from SNP 57927 to 58527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,525 DEBUG Processing 1069/1117 atomic regions from SNP 320676 to 321276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,528 DEBUG Processing 20/66 atomic regions from SNP 5757 to 6360 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:39,724 DEBUG Processing 195/840 atomic regions from SNP 58227 to 58827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,830 DEBUG Processing 21/66 atomic regions from SNP 6060 to 6663 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:39,883 DEBUG Processing 1070/1117 atomic regions from SNP 320976 to 321576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,017 DEBUG Processing 196/840 atomic regions from SNP 58527 to 59127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,159 DEBUG Processing 22/66 atomic regions from SNP 6363 to 6966 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,256 DEBUG Processing 1071/1117 atomic regions from SNP 321276 to 321876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,285 DEBUG Processing 197/840 atomic regions from SNP 58827 to 59427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,479 DEBUG Processing 23/66 atomic regions from SNP 6666 to 7269 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,643 DEBUG Processing 198/840 atomic regions from SNP 59127 to 59727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,680 DEBUG Processing 1072/1117 atomic regions from SNP 321576 to 322176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,723 DEBUG Processing 24/66 atomic regions from SNP 6969 to 7572 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,728 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:48:40,753 DEBUG chr8: Signal quantile: 0.989. signal threshold: 11. Best RMSEA: 0.013 2025-01-31 09:48:40,918 DEBUG Processing 199/840 atomic regions from SNP 59427 to 60027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,964 DEBUG Processing 25/66 atomic regions from SNP 7272 to 7875 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,994 DEBUG Processing 1073/1117 atomic regions from SNP 321876 to 322476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,174 DEBUG Processing 200/840 atomic regions from SNP 59727 to 60327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,214 DEBUG Processing 26/66 atomic regions from SNP 7575 to 8178 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:41,301 DEBUG Processing 1074/1117 atomic regions from SNP 322176 to 322776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,440 DEBUG Processing 201/840 atomic regions from SNP 60027 to 60627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,461 DEBUG Processing 27/66 atomic regions from SNP 7878 to 8481 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:41,600 DEBUG Processing 1075/1117 atomic regions from SNP 322476 to 323076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,705 DEBUG Processing 28/66 atomic regions from SNP 8181 to 8784 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:41,721 DEBUG Processing 202/840 atomic regions from SNP 60327 to 60927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,898 DEBUG Processing 1076/1117 atomic regions from SNP 322776 to 323376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,949 DEBUG Processing 29/66 atomic regions from SNP 8484 to 9087 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,009 DEBUG Processing 203/840 atomic regions from SNP 60627 to 61227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,230 DEBUG Processing 1077/1117 atomic regions from SNP 323076 to 323676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,234 DEBUG Processing 30/66 atomic regions from SNP 8787 to 9390 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,325 DEBUG Processing 204/840 atomic regions from SNP 60927 to 61527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,477 DEBUG Processing 31/66 atomic regions from SNP 9090 to 9693 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,536 DEBUG Processing 1078/1117 atomic regions from SNP 323376 to 323976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,623 DEBUG Processing 205/840 atomic regions from SNP 61227 to 61827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,725 DEBUG Processing 32/66 atomic regions from SNP 9393 to 9996 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,833 DEBUG Processing 1079/1117 atomic regions from SNP 323676 to 324276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,899 DEBUG Processing 206/840 atomic regions from SNP 61527 to 62127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,973 DEBUG Processing 33/66 atomic regions from SNP 9696 to 10299 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,128 DEBUG Processing 1080/1117 atomic regions from SNP 323976 to 324576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,162 DEBUG Processing 207/840 atomic regions from SNP 61827 to 62427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,223 DEBUG Processing 34/66 atomic regions from SNP 9999 to 10602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,298 DEBUG chr8 total SNP count: 215766 2025-01-31 09:48:43,298 DEBUG chr8 length: 129401213 2025-01-31 09:48:43,298 DEBUG ----------------------------------------- 2025-01-31 09:48:43,298 INFO Processing SNPs in chr8 2025-01-31 09:48:43,435 DEBUG Processing 1081/1117 atomic regions from SNP 324276 to 324876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,438 DEBUG Processing 208/840 atomic regions from SNP 62127 to 62727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,497 DEBUG Processing 35/66 atomic regions from SNP 10302 to 10905 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,539 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 215766)] 2025-01-31 09:48:43,701 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:43,723 DEBUG Processing 209/840 atomic regions from SNP 62427 to 63027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,740 DEBUG Processing 1082/1117 atomic regions from SNP 324576 to 325176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,769 DEBUG Processing 36/66 atomic regions from SNP 10605 to 11208 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,982 DEBUG Processing 210/840 atomic regions from SNP 62727 to 63327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,013 DEBUG Processing 37/66 atomic regions from SNP 10908 to 11511 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:44,044 DEBUG Processing 1083/1117 atomic regions from SNP 324876 to 325476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,238 DEBUG Processing 211/840 atomic regions from SNP 63027 to 63627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,258 DEBUG Processing 38/66 atomic regions from SNP 11211 to 11814 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:44,349 DEBUG Processing 1084/1117 atomic regions from SNP 325176 to 325776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,495 DEBUG Processing 212/840 atomic regions from SNP 63327 to 63927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,507 DEBUG Processing 39/66 atomic regions from SNP 11514 to 12117 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:44,655 DEBUG Processing 1085/1117 atomic regions from SNP 325476 to 326076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,749 DEBUG Processing 40/66 atomic regions from SNP 11817 to 12420 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:44,758 DEBUG Processing 213/840 atomic regions from SNP 63627 to 64227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,955 DEBUG Processing 1086/1117 atomic regions from SNP 325776 to 326376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,999 DEBUG Processing 41/66 atomic regions from SNP 12120 to 12723 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:45,020 DEBUG Processing 214/840 atomic regions from SNP 63927 to 64527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,241 DEBUG Subchromosome time: 401.5740093290806, subchromosome SNPs: 302684 2025-01-31 09:48:45,244 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:45,254 DEBUG Processing 42/66 atomic regions from SNP 12423 to 13026 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:45,270 DEBUG Processing 1087/1117 atomic regions from SNP 326076 to 326676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,285 DEBUG Processing 215/840 atomic regions from SNP 64227 to 64827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,499 DEBUG Processing 43/66 atomic regions from SNP 12726 to 13329 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:45,546 DEBUG Processing 216/840 atomic regions from SNP 64527 to 65127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,582 DEBUG Processing 1088/1117 atomic regions from SNP 326376 to 326976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,743 DEBUG Processing 44/66 atomic regions from SNP 13029 to 13632 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:45,809 DEBUG Processing 217/840 atomic regions from SNP 64827 to 65427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,892 DEBUG Processing 1089/1117 atomic regions from SNP 326676 to 327276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,978 DEBUG Processing 45/66 atomic regions from SNP 13332 to 13935 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:46,099 DEBUG Processing 218/840 atomic regions from SNP 65127 to 65727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,210 DEBUG Segmenting atomic regions: 2025-01-31 09:48:46,229 DEBUG Processing 1090/1117 atomic regions from SNP 326976 to 327576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,237 DEBUG Processing 46/66 atomic regions from SNP 13635 to 14238 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:46,353 DEBUG Processing 219/840 atomic regions from SNP 65427 to 66027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,362 DEBUG Processing 1/25 atomic regions from SNP 0 to 602 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:46,518 DEBUG Processing 47/66 atomic regions from SNP 13938 to 14541 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:46,534 DEBUG Processing 1091/1117 atomic regions from SNP 327276 to 327876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,606 DEBUG Processing 220/840 atomic regions from SNP 65727 to 66327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,636 DEBUG Processing 2/25 atomic regions from SNP 302 to 904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:46,784 DEBUG Processing 48/66 atomic regions from SNP 14241 to 14844 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:46,853 DEBUG Processing 1092/1117 atomic regions from SNP 327576 to 328176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,863 DEBUG Processing 221/840 atomic regions from SNP 66027 to 66627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,914 DEBUG Processing 3/25 atomic regions from SNP 604 to 1206 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:47,063 DEBUG Processing 49/66 atomic regions from SNP 14544 to 15147 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:47,128 DEBUG Processing 222/840 atomic regions from SNP 66327 to 66927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,191 DEBUG Processing 4/25 atomic regions from SNP 906 to 1508 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:47,191 DEBUG Processing 1093/1117 atomic regions from SNP 327876 to 328476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,322 DEBUG Processing 50/66 atomic regions from SNP 14847 to 15450 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:47,396 DEBUG Processing 223/840 atomic regions from SNP 66627 to 67227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,479 DEBUG Processing 5/25 atomic regions from SNP 1208 to 1810 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:47,529 DEBUG Processing 1094/1117 atomic regions from SNP 328176 to 328776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,568 DEBUG Processing 51/66 atomic regions from SNP 15150 to 15753 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:47,668 DEBUG Processing 224/840 atomic regions from SNP 66927 to 67527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,775 DEBUG Processing 6/25 atomic regions from SNP 1510 to 2112 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:47,841 DEBUG Processing 52/66 atomic regions from SNP 15453 to 16056 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:47,884 DEBUG Processing 1095/1117 atomic regions from SNP 328476 to 329076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,941 DEBUG Processing 225/840 atomic regions from SNP 67227 to 67827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,065 DEBUG Processing 7/25 atomic regions from SNP 1812 to 2414 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:48,112 DEBUG Processing 53/66 atomic regions from SNP 15756 to 16359 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:48,213 DEBUG Processing 1096/1117 atomic regions from SNP 328776 to 329376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,215 DEBUG Processing 226/840 atomic regions from SNP 67527 to 68127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,349 DEBUG Processing 8/25 atomic regions from SNP 2114 to 2716 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:48,361 DEBUG Processing 54/66 atomic regions from SNP 16059 to 16662 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:48,489 DEBUG Processing 227/840 atomic regions from SNP 67827 to 68427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,545 DEBUG Processing 1097/1117 atomic regions from SNP 329076 to 329676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,612 DEBUG Processing 55/66 atomic regions from SNP 16362 to 16965 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:48,638 DEBUG Processing 9/25 atomic regions from SNP 2416 to 3018 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:48,757 DEBUG Processing 228/840 atomic regions from SNP 68127 to 68727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,861 DEBUG Processing 56/66 atomic regions from SNP 16665 to 17267 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:48,895 DEBUG Processing 1098/1117 atomic regions from SNP 329376 to 329976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,933 DEBUG Processing 10/25 atomic regions from SNP 2718 to 3320 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:49,014 DEBUG Processing 229/840 atomic regions from SNP 68427 to 69027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,103 DEBUG Processing 57/66 atomic regions from SNP 16967 to 17569 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:49,217 DEBUG Processing 11/25 atomic regions from SNP 3020 to 3622 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:49,233 DEBUG Processing 1099/1117 atomic regions from SNP 329676 to 330276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,276 DEBUG Processing 230/840 atomic regions from SNP 68727 to 69327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,346 DEBUG Processing 58/66 atomic regions from SNP 17269 to 17871 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:49,496 DEBUG Processing 12/25 atomic regions from SNP 3322 to 3924 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:49,539 DEBUG Processing 231/840 atomic regions from SNP 69027 to 69627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,552 DEBUG Processing 1100/1117 atomic regions from SNP 329976 to 330576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,592 DEBUG Processing 59/66 atomic regions from SNP 17571 to 18173 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:49,781 DEBUG Processing 13/25 atomic regions from SNP 3624 to 4226 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:49,802 DEBUG Processing 232/840 atomic regions from SNP 69327 to 69927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,840 DEBUG Processing 60/66 atomic regions from SNP 17873 to 18475 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:49,861 DEBUG Processing 1101/1117 atomic regions from SNP 330276 to 330876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,063 DEBUG Processing 233/840 atomic regions from SNP 69627 to 70227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,094 DEBUG Processing 14/25 atomic regions from SNP 3926 to 4528 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:50,106 DEBUG Processing 61/66 atomic regions from SNP 18175 to 18777 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:50,163 DEBUG Processing 1102/1117 atomic regions from SNP 330576 to 331176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,316 DEBUG Processing 234/840 atomic regions from SNP 69927 to 70527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,386 DEBUG Processing 62/66 atomic regions from SNP 18477 to 19079 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:50,421 DEBUG Processing 15/25 atomic regions from SNP 4228 to 4830 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:50,459 DEBUG Processing 1103/1117 atomic regions from SNP 330876 to 331476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,567 DEBUG Processing 235/840 atomic regions from SNP 70227 to 70827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,669 DEBUG Processing 63/66 atomic regions from SNP 18779 to 19381 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:50,739 DEBUG Processing 16/25 atomic regions from SNP 4530 to 5132 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:50,760 DEBUG Processing 1104/1117 atomic regions from SNP 331176 to 331776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,828 DEBUG Processing 236/840 atomic regions from SNP 70527 to 71127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,940 DEBUG Processing 64/66 atomic regions from SNP 19081 to 19683 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:51,060 DEBUG Processing 17/25 atomic regions from SNP 4832 to 5434 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:51,075 DEBUG Processing 1105/1117 atomic regions from SNP 331476 to 332076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,088 DEBUG Processing 237/840 atomic regions from SNP 70827 to 71427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,206 DEBUG Processing 65/66 atomic regions from SNP 19383 to 19985 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:51,351 DEBUG Processing 238/840 atomic regions from SNP 71127 to 71727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,381 DEBUG Processing 18/25 atomic regions from SNP 5134 to 5736 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:51,389 DEBUG Processing 1106/1117 atomic regions from SNP 331776 to 332376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,449 DEBUG Processing 66/66 atomic regions from SNP 19685 to 20287 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:51,584 DEBUG Unique SNPs positions in subchromosome 1: 20288 2025-01-31 09:48:51,609 DEBUG Processing 239/840 atomic regions from SNP 71427 to 72027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,649 DEBUG Subchromosome time: 19.8902752622962, subchromosome SNPs: 20288 2025-01-31 09:48:51,687 DEBUG Processing 1107/1117 atomic regions from SNP 332076 to 332676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,699 DEBUG Processing 19/25 atomic regions from SNP 5436 to 6038 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:51,703 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:51,869 DEBUG Processing 240/840 atomic regions from SNP 71727 to 72327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,991 DEBUG Processing 1108/1117 atomic regions from SNP 332376 to 332976 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,006 DEBUG Processing 20/25 atomic regions from SNP 5738 to 6340 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:52,123 DEBUG Processing 241/840 atomic regions from SNP 72027 to 72627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,317 DEBUG Processing 1109/1117 atomic regions from SNP 332676 to 333276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,322 DEBUG Processing 21/25 atomic regions from SNP 6040 to 6642 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:52,377 DEBUG Processing 242/840 atomic regions from SNP 72327 to 72927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,625 DEBUG Processing 1110/1117 atomic regions from SNP 332976 to 333576 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,636 DEBUG Processing 243/840 atomic regions from SNP 72627 to 73227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,642 DEBUG Processing 22/25 atomic regions from SNP 6342 to 6944 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:52,891 DEBUG Processing 244/840 atomic regions from SNP 72927 to 73527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,925 DEBUG Processing 1111/1117 atomic regions from SNP 333276 to 333876 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,949 DEBUG Segmenting atomic regions: 2025-01-31 09:48:52,958 DEBUG Processing 23/25 atomic regions from SNP 6644 to 7245 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:53,059 DEBUG Processing 1/735 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,147 DEBUG Processing 245/840 atomic regions from SNP 73227 to 73827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,225 DEBUG Processing 1112/1117 atomic regions from SNP 333576 to 334176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,286 DEBUG Processing 24/25 atomic regions from SNP 6945 to 7546 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:53,303 DEBUG Processing 2/735 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,402 DEBUG Processing 246/840 atomic regions from SNP 73527 to 74127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,525 DEBUG Processing 1113/1117 atomic regions from SNP 333876 to 334476 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,547 DEBUG Processing 3/735 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,608 DEBUG Processing 25/25 atomic regions from SNP 7246 to 7847 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:53,657 DEBUG Processing 247/840 atomic regions from SNP 73827 to 74427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,758 DEBUG Unique SNPs positions in subchromosome 2: 7848 2025-01-31 09:48:53,769 DEBUG Subchromosome time: 8.524670530110598, subchromosome SNPs: 7848 2025-01-31 09:48:53,770 DEBUG Estimated BADs: [1.43, 0.24, 1.43, 0.36, 11.41, 1.43, 4.28, 0.29, 2.85, 0.29, 1.43, 0.24, 0.71, 0.29, 1.43, 0.48, 1.43, 2.85, 1.43, 0.71, 7.13, 0.20, 1.43, 2.85, 0.20, 1.43, 0.71, 5.71, 2.85, 0.24, 1.43, 2.85, 1.43, 0.71, 2.85, 0.71, 2.85, 0.71, 4.28, 1.43, 1.43, 7.13] SNP counts: [7911, 2708, 11134, 4206, 136, 11633, 21448, 1099, 4346, 8640, 1787, 3894, 9619, 5828, 6880, 11906, 3365, 6889, 13752, 6081, 1156, 6557, 1968, 7331, 9302, 12579, 18329, 1603, 6489, 1794, 5407, 10276, 6518, 13378, 2209, 9907, 15317, 7284, 8925, 13093, 3794, 4054] SNP IDs counts: [7911, 2708, 11134, 4206, 136, 11633, 21448, 1099, 4346, 8640, 1787, 3894, 9619, 5828, 6880, 11906, 3365, 6889, 13752, 6081, 1156, 6557, 1968, 7331, 9302, 12579, 18329, 1603, 6489, 1794, 5407, 10276, 6518, 13378, 2209, 9907, 15317, 7284, 8925, 13093, 3794, 4054] Critical gap: 731671bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.41Mbp, 9.08Mbp, 15.48Mbp, 18.03Mbp, 18.10Mbp, 24.92Mbp, 36.25Mbp, 36.98Mbp, 39.37Mbp, 44.53Mbp, 45.50Mbp, 47.92Mbp, 53.27Mbp, 57.08Mbp, 60.94Mbp, 67.83Mbp, 69.71Mbp, 73.37Mbp, 80.87Mbp, 84.65Mbp, 85.27Mbp, 89.46Mbp, 90.85Mbp, 94.72Mbp, 101.08Mbp, 108.00Mbp, 118.64Mbp, 119.47Mbp, 123.02Mbp, 124.09Mbp, 127.07Mbp, 132.57Mbp, 136.19Mbp, 143.87Mbp, 145.07Mbp, 150.75Mbp, 159.20Mbp, 163.26Mbp, 168.02Mbp, 175.18Mbp[1.52Mbp], 179.85Mbp, 182.11Mbp] 2025-01-31 09:48:53,770 DEBUG chr2 time: 8.525398548692465 s 2025-01-31 09:48:53,791 DEBUG Processing 4/735 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,837 DEBUG Processing 1114/1117 atomic regions from SNP 334176 to 334776 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,911 DEBUG Processing 248/840 atomic regions from SNP 74127 to 74727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,969 DEBUG chr2: Fitting background model for 42 segments 2025-01-31 09:48:54,026 DEBUG Processing 5/735 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,163 DEBUG Processing 1115/1117 atomic regions from SNP 334476 to 335076 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,169 DEBUG Processing 249/840 atomic regions from SNP 74427 to 75027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,258 DEBUG Processing 6/735 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,427 DEBUG Processing 250/840 atomic regions from SNP 74727 to 75327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,470 DEBUG Processing 1116/1117 atomic regions from SNP 334776 to 335376 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,495 DEBUG Processing 7/735 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,678 DEBUG Processing 251/840 atomic regions from SNP 75027 to 75627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,757 DEBUG Processing 8/735 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,768 DEBUG Processing 1117/1117 atomic regions from SNP 335076 to 335676 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,914 DEBUG Unique SNPs positions in subchromosome 1: 335677 2025-01-31 09:48:54,933 DEBUG Processing 252/840 atomic regions from SNP 75327 to 75927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,008 DEBUG Processing 9/735 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,185 DEBUG Processing 253/840 atomic regions from SNP 75627 to 76227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,249 DEBUG Processing 10/735 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,443 DEBUG Processing 254/840 atomic regions from SNP 75927 to 76527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,487 DEBUG Processing 11/735 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,731 DEBUG Processing 12/735 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,732 DEBUG Processing 255/840 atomic regions from SNP 76227 to 76827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,978 DEBUG Processing 13/735 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,004 DEBUG Processing 256/840 atomic regions from SNP 76527 to 77127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,224 DEBUG Processing 14/735 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,258 DEBUG Processing 257/840 atomic regions from SNP 76827 to 77427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,470 DEBUG Processing 15/735 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,513 DEBUG Processing 258/840 atomic regions from SNP 77127 to 77727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,725 DEBUG Processing 16/735 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,770 DEBUG Processing 259/840 atomic regions from SNP 77427 to 78027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,984 DEBUG Processing 17/735 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,017 DEBUG Processing 260/840 atomic regions from SNP 77727 to 78327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,224 DEBUG Processing 18/735 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,268 DEBUG Processing 261/840 atomic regions from SNP 78027 to 78627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,465 DEBUG Processing 19/735 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,520 DEBUG Processing 262/840 atomic regions from SNP 78327 to 78927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,704 DEBUG Processing 20/735 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,812 DEBUG Processing 263/840 atomic regions from SNP 78627 to 79227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,974 DEBUG Processing 21/735 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,091 DEBUG Processing 264/840 atomic regions from SNP 78927 to 79527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,218 DEBUG Processing 22/735 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,334 DEBUG Processing 265/840 atomic regions from SNP 79227 to 79827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,467 DEBUG Processing 23/735 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,579 DEBUG Processing 266/840 atomic regions from SNP 79527 to 80127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,721 DEBUG Processing 24/735 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,829 DEBUG Processing 267/840 atomic regions from SNP 79827 to 80427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,975 DEBUG Processing 25/735 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,079 DEBUG Processing 268/840 atomic regions from SNP 80127 to 80727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,251 DEBUG Processing 26/735 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,337 DEBUG Processing 269/840 atomic regions from SNP 80427 to 81027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,520 DEBUG Processing 27/735 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,643 DEBUG Processing 270/840 atomic regions from SNP 80727 to 81327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,764 DEBUG Processing 28/735 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,901 DEBUG Processing 271/840 atomic regions from SNP 81027 to 81627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,006 DEBUG Processing 29/735 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,157 DEBUG Processing 272/840 atomic regions from SNP 81327 to 81927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,249 DEBUG Processing 30/735 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,405 DEBUG Processing 273/840 atomic regions from SNP 81627 to 82227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,495 DEBUG Processing 31/735 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,667 DEBUG Processing 274/840 atomic regions from SNP 81927 to 82527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,742 DEBUG Processing 32/735 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,978 DEBUG Processing 275/840 atomic regions from SNP 82227 to 82827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,040 DEBUG Processing 33/735 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,244 DEBUG Processing 276/840 atomic regions from SNP 82527 to 83127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,289 DEBUG Processing 34/735 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,528 DEBUG Processing 277/840 atomic regions from SNP 82827 to 83427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,566 DEBUG Processing 35/735 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,787 DEBUG Processing 278/840 atomic regions from SNP 83127 to 83727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,822 DEBUG Processing 36/735 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,038 DEBUG Processing 279/840 atomic regions from SNP 83427 to 84027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,072 DEBUG Processing 37/735 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,294 DEBUG Processing 280/840 atomic regions from SNP 83727 to 84327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,317 DEBUG Processing 38/735 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,554 DEBUG Processing 281/840 atomic regions from SNP 84027 to 84627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,558 DEBUG Processing 39/735 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,794 DEBUG Processing 40/735 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,815 DEBUG Processing 282/840 atomic regions from SNP 84327 to 84927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,034 DEBUG Processing 41/735 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,083 DEBUG Processing 283/840 atomic regions from SNP 84627 to 85227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,280 DEBUG Processing 42/735 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,345 DEBUG Processing 284/840 atomic regions from SNP 84927 to 85527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,524 DEBUG Processing 43/735 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,607 DEBUG Processing 285/840 atomic regions from SNP 85227 to 85827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,769 DEBUG Processing 44/735 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,866 DEBUG Processing 286/840 atomic regions from SNP 85527 to 86127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,015 DEBUG Processing 45/735 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,119 DEBUG Processing 287/840 atomic regions from SNP 85827 to 86427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,251 DEBUG Processing 46/735 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,374 DEBUG Processing 288/840 atomic regions from SNP 86127 to 86727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,490 DEBUG Processing 47/735 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,630 DEBUG Processing 289/840 atomic regions from SNP 86427 to 87027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,740 DEBUG Processing 48/735 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,885 DEBUG Processing 290/840 atomic regions from SNP 86727 to 87327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,988 DEBUG Processing 49/735 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,144 DEBUG Processing 291/840 atomic regions from SNP 87027 to 87627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,234 DEBUG Processing 50/735 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,400 DEBUG Processing 292/840 atomic regions from SNP 87327 to 87927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,480 DEBUG Processing 51/735 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,654 DEBUG Processing 293/840 atomic regions from SNP 87627 to 88227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,727 DEBUG Processing 52/735 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,913 DEBUG Processing 294/840 atomic regions from SNP 87927 to 88527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,973 DEBUG Processing 53/735 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,168 DEBUG Processing 295/840 atomic regions from SNP 88227 to 88827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,218 DEBUG Processing 54/735 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,433 DEBUG Processing 296/840 atomic regions from SNP 88527 to 89127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,468 DEBUG Processing 55/735 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,712 DEBUG Processing 56/735 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,718 DEBUG Processing 297/840 atomic regions from SNP 88827 to 89427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,977 DEBUG Processing 57/735 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,002 DEBUG Processing 298/840 atomic regions from SNP 89127 to 89727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,226 DEBUG Processing 58/735 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,276 DEBUG Processing 299/840 atomic regions from SNP 89427 to 90027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,472 DEBUG Processing 59/735 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,533 DEBUG Processing 300/840 atomic regions from SNP 89727 to 90327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,721 DEBUG Processing 60/735 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,799 DEBUG Processing 301/840 atomic regions from SNP 90027 to 90627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,965 DEBUG Processing 61/735 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,077 DEBUG Processing 302/840 atomic regions from SNP 90327 to 90927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,204 DEBUG Processing 62/735 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,345 DEBUG Processing 303/840 atomic regions from SNP 90627 to 91227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,474 DEBUG Processing 63/735 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,602 DEBUG Processing 304/840 atomic regions from SNP 90927 to 91527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,723 DEBUG Processing 64/735 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,858 DEBUG Processing 305/840 atomic regions from SNP 91227 to 91827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,972 DEBUG Processing 65/735 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,108 DEBUG Processing 306/840 atomic regions from SNP 91527 to 92127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,216 DEBUG Processing 66/735 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,366 DEBUG Processing 307/840 atomic regions from SNP 91827 to 92427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,458 DEBUG Processing 67/735 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,623 DEBUG Processing 308/840 atomic regions from SNP 92127 to 92727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,696 DEBUG Processing 68/735 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,896 DEBUG Processing 309/840 atomic regions from SNP 92427 to 93027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,941 DEBUG Processing 69/735 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,012 DEBUG Segmenting atomic regions: 2025-01-31 09:49:10,118 DEBUG Processing 1/718 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,179 DEBUG Processing 310/840 atomic regions from SNP 92727 to 93327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,188 DEBUG Processing 70/735 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,361 DEBUG Processing 2/718 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,437 DEBUG Processing 71/735 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,451 DEBUG Processing 311/840 atomic regions from SNP 93027 to 93627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,621 DEBUG Processing 3/718 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,683 DEBUG Processing 72/735 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,721 DEBUG Processing 312/840 atomic regions from SNP 93327 to 93927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,886 DEBUG Processing 4/718 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,926 DEBUG Processing 73/735 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,984 DEBUG Processing 313/840 atomic regions from SNP 93627 to 94227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,121 DEBUG Processing 5/718 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,166 DEBUG Processing 74/735 atomic regions from SNP 21973 to 22573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,272 DEBUG Processing 314/840 atomic regions from SNP 93927 to 94527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,366 DEBUG Processing 6/718 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,405 DEBUG Processing 75/735 atomic regions from SNP 22273 to 22873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,542 DEBUG Processing 315/840 atomic regions from SNP 94227 to 94827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,634 DEBUG Processing 7/718 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,647 DEBUG Processing 76/735 atomic regions from SNP 22573 to 23173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,805 DEBUG Processing 316/840 atomic regions from SNP 94527 to 95127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,883 DEBUG Processing 77/735 atomic regions from SNP 22873 to 23473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,897 DEBUG Processing 8/718 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,065 DEBUG Processing 317/840 atomic regions from SNP 94827 to 95427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,120 DEBUG Processing 78/735 atomic regions from SNP 23173 to 23773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,137 DEBUG Processing 9/718 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,324 DEBUG Processing 318/840 atomic regions from SNP 95127 to 95727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,357 DEBUG Processing 79/735 atomic regions from SNP 23473 to 24073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,376 DEBUG Processing 10/718 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,586 DEBUG Processing 319/840 atomic regions from SNP 95427 to 96027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,595 DEBUG Processing 80/735 atomic regions from SNP 23773 to 24373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,617 DEBUG Processing 11/718 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,834 DEBUG Processing 81/735 atomic regions from SNP 24073 to 24673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,848 DEBUG Processing 320/840 atomic regions from SNP 95727 to 96327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,857 DEBUG Processing 12/718 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,076 DEBUG Processing 82/735 atomic regions from SNP 24373 to 24973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,097 DEBUG Processing 13/718 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,110 DEBUG Processing 321/840 atomic regions from SNP 96027 to 96627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,321 DEBUG Processing 83/735 atomic regions from SNP 24673 to 25273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,337 DEBUG Processing 14/718 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,372 DEBUG Processing 322/840 atomic regions from SNP 96327 to 96927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,567 DEBUG Processing 84/735 atomic regions from SNP 24973 to 25573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,578 DEBUG Processing 15/718 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,627 DEBUG Processing 323/840 atomic regions from SNP 96627 to 97227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,815 DEBUG Processing 85/735 atomic regions from SNP 25273 to 25873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,816 DEBUG Processing 16/718 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,888 DEBUG Processing 324/840 atomic regions from SNP 96927 to 97527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,046 DEBUG Processing 17/718 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,058 DEBUG Processing 86/735 atomic regions from SNP 25573 to 26173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,147 DEBUG Processing 325/840 atomic regions from SNP 97227 to 97827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,280 DEBUG Processing 18/718 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,300 DEBUG Processing 87/735 atomic regions from SNP 25873 to 26473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,405 DEBUG Processing 326/840 atomic regions from SNP 97527 to 98127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,517 DEBUG Processing 19/718 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,550 DEBUG Processing 88/735 atomic regions from SNP 26173 to 26773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,656 DEBUG Processing 327/840 atomic regions from SNP 97827 to 98427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,763 DEBUG Processing 20/718 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,800 DEBUG Processing 89/735 atomic regions from SNP 26473 to 27073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,912 DEBUG Processing 328/840 atomic regions from SNP 98127 to 98727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,002 DEBUG Processing 21/718 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,051 DEBUG Processing 90/735 atomic regions from SNP 26773 to 27373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,168 DEBUG Processing 329/840 atomic regions from SNP 98427 to 99027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,244 DEBUG Processing 22/718 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,301 DEBUG Processing 91/735 atomic regions from SNP 27073 to 27673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,434 DEBUG Processing 330/840 atomic regions from SNP 98727 to 99327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,487 DEBUG Processing 23/718 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,546 DEBUG Processing 92/735 atomic regions from SNP 27373 to 27973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,700 DEBUG Processing 331/840 atomic regions from SNP 99027 to 99627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,738 DEBUG Processing 24/718 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,793 DEBUG Processing 93/735 atomic regions from SNP 27673 to 28273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,965 DEBUG Processing 332/840 atomic regions from SNP 99327 to 99927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,995 DEBUG Processing 25/718 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,046 DEBUG Processing 94/735 atomic regions from SNP 27973 to 28573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,237 DEBUG Processing 333/840 atomic regions from SNP 99627 to 100227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,252 DEBUG Processing 26/718 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,300 DEBUG Processing 95/735 atomic regions from SNP 28273 to 28873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,502 DEBUG Processing 27/718 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,509 DEBUG Processing 334/840 atomic regions from SNP 99927 to 100527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,549 DEBUG Processing 96/735 atomic regions from SNP 28573 to 29173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,746 DEBUG Processing 28/718 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,780 DEBUG Processing 335/840 atomic regions from SNP 100227 to 100827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,810 DEBUG Processing 97/735 atomic regions from SNP 28873 to 29473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,996 DEBUG Processing 29/718 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,045 DEBUG Processing 336/840 atomic regions from SNP 100527 to 101127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,070 DEBUG Processing 98/735 atomic regions from SNP 29173 to 29773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,256 DEBUG Processing 30/718 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,319 DEBUG Processing 337/840 atomic regions from SNP 100827 to 101427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,326 DEBUG Processing 99/735 atomic regions from SNP 29473 to 30073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,506 DEBUG Processing 31/718 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,520 DEBUG Segmenting atomic regions: 2025-01-31 09:49:17,594 DEBUG Processing 100/735 atomic regions from SNP 29773 to 30373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,596 DEBUG Processing 338/840 atomic regions from SNP 101127 to 101727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,632 DEBUG Processing 1/691 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,747 DEBUG Processing 32/718 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,847 DEBUG Processing 101/735 atomic regions from SNP 30073 to 30673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,866 DEBUG Processing 339/840 atomic regions from SNP 101427 to 102027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,888 DEBUG Processing 2/691 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,991 DEBUG Processing 33/718 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,100 DEBUG Processing 102/735 atomic regions from SNP 30373 to 30973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,143 DEBUG Processing 3/691 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,144 DEBUG Processing 340/840 atomic regions from SNP 101727 to 102327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,229 DEBUG Processing 34/718 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,351 DEBUG Processing 103/735 atomic regions from SNP 30673 to 31273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,402 DEBUG Processing 4/691 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,412 DEBUG Processing 341/840 atomic regions from SNP 102027 to 102627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,474 DEBUG Processing 35/718 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,601 DEBUG Processing 104/735 atomic regions from SNP 30973 to 31573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,656 DEBUG Processing 5/691 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,676 DEBUG Processing 342/840 atomic regions from SNP 102327 to 102927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,719 DEBUG Processing 36/718 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,854 DEBUG Processing 105/735 atomic regions from SNP 31273 to 31873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,930 DEBUG Processing 6/691 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,941 DEBUG Processing 343/840 atomic regions from SNP 102627 to 103227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,966 DEBUG Processing 37/718 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,116 DEBUG Processing 106/735 atomic regions from SNP 31573 to 32173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,211 DEBUG Processing 344/840 atomic regions from SNP 102927 to 103527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,215 DEBUG Processing 7/691 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,215 DEBUG Processing 38/718 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,368 DEBUG Processing 107/735 atomic regions from SNP 31873 to 32473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,470 DEBUG Processing 39/718 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,481 DEBUG Processing 8/691 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,488 DEBUG Processing 345/840 atomic regions from SNP 103227 to 103827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,619 DEBUG Processing 108/735 atomic regions from SNP 32173 to 32773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,728 DEBUG Processing 40/718 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,754 DEBUG Processing 9/691 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,761 DEBUG Processing 346/840 atomic regions from SNP 103527 to 104127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,865 DEBUG Processing 109/735 atomic regions from SNP 32473 to 33073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,983 DEBUG Processing 41/718 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,030 DEBUG Processing 347/840 atomic regions from SNP 103827 to 104427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,034 DEBUG Processing 10/691 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,116 DEBUG Processing 110/735 atomic regions from SNP 32773 to 33373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,228 DEBUG Processing 42/718 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,290 DEBUG Processing 348/840 atomic regions from SNP 104127 to 104727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,306 DEBUG Processing 11/691 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,361 DEBUG Processing 111/735 atomic regions from SNP 33073 to 33673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,475 DEBUG Processing 43/718 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,552 DEBUG Processing 349/840 atomic regions from SNP 104427 to 105027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,582 DEBUG Processing 12/691 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,604 DEBUG Processing 112/735 atomic regions from SNP 33373 to 33973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,750 DEBUG Processing 44/718 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,811 DEBUG Processing 350/840 atomic regions from SNP 104727 to 105327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,840 DEBUG Processing 13/691 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,845 DEBUG Processing 113/735 atomic regions from SNP 33673 to 34273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,029 DEBUG Processing 45/718 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,081 DEBUG Processing 351/840 atomic regions from SNP 105027 to 105627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,104 DEBUG Processing 114/735 atomic regions from SNP 33973 to 34573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,118 DEBUG Processing 14/691 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,274 DEBUG Processing 46/718 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,349 DEBUG Processing 352/840 atomic regions from SNP 105327 to 105927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,354 DEBUG Processing 115/735 atomic regions from SNP 34273 to 34873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,394 DEBUG Processing 15/691 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,524 DEBUG Processing 47/718 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,608 DEBUG Processing 116/735 atomic regions from SNP 34573 to 35173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,617 DEBUG Processing 353/840 atomic regions from SNP 105627 to 106227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,649 DEBUG Processing 16/691 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,793 DEBUG Processing 48/718 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,856 DEBUG Processing 117/735 atomic regions from SNP 34873 to 35473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,881 DEBUG Processing 354/840 atomic regions from SNP 105927 to 106527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,906 DEBUG Processing 17/691 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,038 DEBUG Processing 49/718 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,093 DEBUG Processing 118/735 atomic regions from SNP 35173 to 35773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,131 DEBUG Processing 355/840 atomic regions from SNP 106227 to 106827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,156 DEBUG Processing 18/691 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,284 DEBUG Processing 50/718 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,331 DEBUG Processing 119/735 atomic regions from SNP 35473 to 36073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,386 DEBUG Processing 356/840 atomic regions from SNP 106527 to 107127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,401 DEBUG Processing 19/691 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,526 DEBUG Processing 51/718 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,570 DEBUG Processing 120/735 atomic regions from SNP 35773 to 36373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,645 DEBUG Processing 20/691 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,649 DEBUG Processing 357/840 atomic regions from SNP 106827 to 107427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,759 DEBUG Processing 52/718 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,816 DEBUG Processing 121/735 atomic regions from SNP 36073 to 36673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,897 DEBUG Processing 21/691 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,905 DEBUG Processing 358/840 atomic regions from SNP 107127 to 107727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,006 DEBUG Processing 53/718 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,069 DEBUG Processing 122/735 atomic regions from SNP 36373 to 36973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,164 DEBUG Processing 359/840 atomic regions from SNP 107427 to 108027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,190 DEBUG Processing 22/691 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,258 DEBUG Processing 54/718 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,312 DEBUG Processing 123/735 atomic regions from SNP 36673 to 37273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,424 DEBUG Processing 360/840 atomic regions from SNP 107727 to 108327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,478 DEBUG Processing 23/691 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,502 DEBUG Processing 55/718 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,555 DEBUG Processing 124/735 atomic regions from SNP 36973 to 37573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,681 DEBUG Processing 361/840 atomic regions from SNP 108027 to 108627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,747 DEBUG Processing 56/718 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,765 DEBUG Processing 24/691 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,807 DEBUG Processing 125/735 atomic regions from SNP 37273 to 37873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,942 DEBUG Processing 362/840 atomic regions from SNP 108327 to 108927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,006 DEBUG Processing 57/718 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,048 DEBUG Processing 25/691 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,058 DEBUG Processing 126/735 atomic regions from SNP 37573 to 38173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,205 DEBUG Processing 363/840 atomic regions from SNP 108627 to 109227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,277 DEBUG Processing 58/718 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,303 DEBUG Processing 26/691 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,306 DEBUG Processing 127/735 atomic regions from SNP 37873 to 38473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,472 DEBUG Processing 364/840 atomic regions from SNP 108927 to 109527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,542 DEBUG Processing 59/718 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,557 DEBUG Processing 128/735 atomic regions from SNP 38173 to 38773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,563 DEBUG Processing 27/691 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,754 DEBUG Processing 365/840 atomic regions from SNP 109227 to 109827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,775 DEBUG Processing 60/718 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,808 DEBUG Processing 129/735 atomic regions from SNP 38473 to 39073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,840 DEBUG Processing 28/691 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,012 DEBUG Processing 61/718 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,047 DEBUG Processing 366/840 atomic regions from SNP 109527 to 110127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,057 DEBUG Processing 130/735 atomic regions from SNP 38773 to 39373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,126 DEBUG Processing 29/691 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,250 DEBUG Processing 62/718 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,310 DEBUG Processing 131/735 atomic regions from SNP 39073 to 39673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,318 DEBUG Processing 367/840 atomic regions from SNP 109827 to 110427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,400 DEBUG Processing 30/691 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,496 DEBUG Processing 63/718 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,561 DEBUG Processing 132/735 atomic regions from SNP 39373 to 39973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,587 DEBUG Processing 368/840 atomic regions from SNP 110127 to 110727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,676 DEBUG Processing 31/691 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,735 DEBUG Processing 64/718 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,805 DEBUG Processing 133/735 atomic regions from SNP 39673 to 40273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,850 DEBUG Processing 369/840 atomic regions from SNP 110427 to 111027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,960 DEBUG Processing 32/691 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,971 DEBUG Processing 65/718 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,047 DEBUG Processing 134/735 atomic regions from SNP 39973 to 40573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,114 DEBUG Processing 370/840 atomic regions from SNP 110727 to 111327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,209 DEBUG Processing 66/718 atomic regions from SNP 19565 to 20165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,244 DEBUG Processing 33/691 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,291 DEBUG Processing 135/735 atomic regions from SNP 40273 to 40873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,371 DEBUG Processing 371/840 atomic regions from SNP 111027 to 111627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,459 DEBUG Processing 67/718 atomic regions from SNP 19865 to 20465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,522 DEBUG Processing 34/691 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,537 DEBUG Processing 136/735 atomic regions from SNP 40573 to 41173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,629 DEBUG Processing 372/840 atomic regions from SNP 111327 to 111927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,730 DEBUG Processing 68/718 atomic regions from SNP 20165 to 20765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,784 DEBUG Processing 137/735 atomic regions from SNP 40873 to 41473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,799 DEBUG Processing 35/691 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,884 DEBUG Processing 373/840 atomic regions from SNP 111627 to 112227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,992 DEBUG Processing 69/718 atomic regions from SNP 20465 to 21065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,030 DEBUG Processing 138/735 atomic regions from SNP 41173 to 41773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,049 DEBUG Processing 36/691 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,142 DEBUG Processing 374/840 atomic regions from SNP 111927 to 112527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,232 DEBUG Processing 70/718 atomic regions from SNP 20765 to 21365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,277 DEBUG Processing 139/735 atomic regions from SNP 41473 to 42073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,302 DEBUG Processing 37/691 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,405 DEBUG Processing 375/840 atomic regions from SNP 112227 to 112827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,471 DEBUG Processing 71/718 atomic regions from SNP 21065 to 21665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,522 DEBUG Processing 140/735 atomic regions from SNP 41773 to 42373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,559 DEBUG Processing 38/691 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,671 DEBUG Processing 376/840 atomic regions from SNP 112527 to 113127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,715 DEBUG Processing 72/718 atomic regions from SNP 21365 to 21965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,770 DEBUG Processing 141/735 atomic regions from SNP 42073 to 42673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,822 DEBUG Processing 39/691 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,935 DEBUG Processing 377/840 atomic regions from SNP 112827 to 113427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,959 DEBUG Processing 73/718 atomic regions from SNP 21665 to 22265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,019 DEBUG Processing 142/735 atomic regions from SNP 42373 to 42973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,102 DEBUG Processing 40/691 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,208 DEBUG Processing 378/840 atomic regions from SNP 113127 to 113727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,210 DEBUG Processing 74/718 atomic regions from SNP 21965 to 22565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,268 DEBUG Processing 143/735 atomic regions from SNP 42673 to 43273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,383 DEBUG Processing 41/691 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,459 DEBUG Processing 75/718 atomic regions from SNP 22265 to 22865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,474 DEBUG Processing 379/840 atomic regions from SNP 113427 to 114027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,518 DEBUG Processing 144/735 atomic regions from SNP 42973 to 43573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,665 DEBUG Processing 42/691 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,712 DEBUG Processing 76/718 atomic regions from SNP 22565 to 23165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,746 DEBUG Processing 380/840 atomic regions from SNP 113727 to 114327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,774 DEBUG Processing 145/735 atomic regions from SNP 43273 to 43873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,948 DEBUG Processing 43/691 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,962 DEBUG Processing 77/718 atomic regions from SNP 22865 to 23465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,018 DEBUG Processing 381/840 atomic regions from SNP 114027 to 114627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,022 DEBUG Processing 146/735 atomic regions from SNP 43573 to 44173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,221 DEBUG Processing 78/718 atomic regions from SNP 23165 to 23765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,223 DEBUG Processing 44/691 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,280 DEBUG Processing 147/735 atomic regions from SNP 43873 to 44473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,310 DEBUG Processing 382/840 atomic regions from SNP 114327 to 114927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,476 DEBUG Processing 79/718 atomic regions from SNP 23465 to 24065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,491 DEBUG Processing 45/691 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,580 DEBUG Processing 148/735 atomic regions from SNP 44173 to 44773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,641 DEBUG Processing 383/840 atomic regions from SNP 114627 to 115227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,718 DEBUG Processing 80/718 atomic regions from SNP 23765 to 24365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,741 DEBUG Processing 46/691 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,830 DEBUG Processing 149/735 atomic regions from SNP 44473 to 45073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,940 DEBUG Processing 384/840 atomic regions from SNP 114927 to 115527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,964 DEBUG Processing 81/718 atomic regions from SNP 24065 to 24665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,988 DEBUG Processing 47/691 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,069 DEBUG Processing 150/735 atomic regions from SNP 44773 to 45373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,209 DEBUG Processing 385/840 atomic regions from SNP 115227 to 115827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,209 DEBUG Processing 82/718 atomic regions from SNP 24365 to 24965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,240 DEBUG Processing 48/691 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,311 DEBUG Processing 151/735 atomic regions from SNP 45073 to 45673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,458 DEBUG Processing 83/718 atomic regions from SNP 24665 to 25265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,475 DEBUG Processing 386/840 atomic regions from SNP 115527 to 116127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,497 DEBUG Processing 49/691 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,560 DEBUG Processing 152/735 atomic regions from SNP 45373 to 45973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,703 DEBUG Processing 84/718 atomic regions from SNP 24965 to 25565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,744 DEBUG Processing 387/840 atomic regions from SNP 115827 to 116427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,751 DEBUG Processing 50/691 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,809 DEBUG Processing 153/735 atomic regions from SNP 45673 to 46273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,013 DEBUG Processing 85/718 atomic regions from SNP 25265 to 25865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,046 DEBUG Processing 51/691 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,062 DEBUG Processing 388/840 atomic regions from SNP 116127 to 116727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,125 DEBUG Processing 154/735 atomic regions from SNP 45973 to 46573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,366 DEBUG Processing 86/718 atomic regions from SNP 25565 to 26165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,371 DEBUG Processing 52/691 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,410 DEBUG Processing 389/840 atomic regions from SNP 116427 to 117027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,422 DEBUG Processing 155/735 atomic regions from SNP 46273 to 46873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,706 DEBUG Processing 87/718 atomic regions from SNP 25865 to 26465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,724 DEBUG Processing 53/691 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,799 DEBUG Processing 156/735 atomic regions from SNP 46573 to 47173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,802 DEBUG Processing 390/840 atomic regions from SNP 116727 to 117327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,023 DEBUG Processing 88/718 atomic regions from SNP 26165 to 26765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,100 DEBUG Processing 54/691 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,125 DEBUG Processing 157/735 atomic regions from SNP 46873 to 47473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,153 DEBUG Processing 391/840 atomic regions from SNP 117027 to 117627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,271 DEBUG Processing 89/718 atomic regions from SNP 26465 to 27065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,371 DEBUG Processing 55/691 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,396 DEBUG Processing 158/735 atomic regions from SNP 47173 to 47773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,455 DEBUG Processing 392/840 atomic regions from SNP 117327 to 117927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,512 DEBUG Processing 90/718 atomic regions from SNP 26765 to 27365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,631 DEBUG Processing 56/691 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,652 DEBUG Processing 159/735 atomic regions from SNP 47473 to 48073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,743 DEBUG Processing 393/840 atomic regions from SNP 117627 to 118227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,759 DEBUG Processing 91/718 atomic regions from SNP 27065 to 27665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,890 DEBUG Processing 57/691 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,911 DEBUG Processing 160/735 atomic regions from SNP 47773 to 48373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,013 DEBUG Processing 92/718 atomic regions from SNP 27365 to 27965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,048 DEBUG Processing 394/840 atomic regions from SNP 117927 to 118527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,149 DEBUG Processing 58/691 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,166 DEBUG Processing 161/735 atomic regions from SNP 48073 to 48673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,271 DEBUG Processing 93/718 atomic regions from SNP 27665 to 28265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,348 DEBUG Processing 395/840 atomic regions from SNP 118227 to 118827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,403 DEBUG Processing 59/691 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,419 DEBUG Processing 162/735 atomic regions from SNP 48373 to 48973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,516 DEBUG Processing 94/718 atomic regions from SNP 27965 to 28565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,622 DEBUG Processing 396/840 atomic regions from SNP 118527 to 119127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,666 DEBUG Processing 60/691 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,679 DEBUG Processing 163/735 atomic regions from SNP 48673 to 49273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,767 DEBUG Processing 95/718 atomic regions from SNP 28265 to 28865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,887 DEBUG Processing 397/840 atomic regions from SNP 118827 to 119427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,943 DEBUG Processing 164/735 atomic regions from SNP 48973 to 49573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,955 DEBUG Processing 61/691 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,020 DEBUG Processing 96/718 atomic regions from SNP 28565 to 29165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,148 DEBUG Processing 398/840 atomic regions from SNP 119127 to 119727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,201 DEBUG Processing 165/735 atomic regions from SNP 49273 to 49873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,233 DEBUG Processing 62/691 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,273 DEBUG Processing 97/718 atomic regions from SNP 28865 to 29465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,407 DEBUG Processing 399/840 atomic regions from SNP 119427 to 120027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,453 DEBUG Processing 166/735 atomic regions from SNP 49573 to 50173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,514 DEBUG Processing 63/691 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,520 DEBUG Processing 98/718 atomic regions from SNP 29165 to 29765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,667 DEBUG Processing 400/840 atomic regions from SNP 119727 to 120327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,704 DEBUG Processing 167/735 atomic regions from SNP 49873 to 50473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,772 DEBUG Processing 64/691 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,778 DEBUG Processing 99/718 atomic regions from SNP 29465 to 30065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,930 DEBUG Processing 401/840 atomic regions from SNP 120027 to 120627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,956 DEBUG Processing 168/735 atomic regions from SNP 50173 to 50773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,022 DEBUG Processing 100/718 atomic regions from SNP 29765 to 30365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,023 DEBUG Processing 65/691 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,192 DEBUG Processing 402/840 atomic regions from SNP 120327 to 120927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,209 DEBUG Processing 169/735 atomic regions from SNP 50473 to 51073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,278 DEBUG Processing 66/691 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,289 DEBUG Processing 101/718 atomic regions from SNP 30065 to 30665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,453 DEBUG Processing 403/840 atomic regions from SNP 120627 to 121227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,460 DEBUG Processing 170/735 atomic regions from SNP 50773 to 51373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,538 DEBUG Processing 67/691 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,546 DEBUG Processing 102/718 atomic regions from SNP 30365 to 30965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,707 DEBUG Processing 404/840 atomic regions from SNP 120927 to 121527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,710 DEBUG Processing 171/735 atomic regions from SNP 51073 to 51673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,798 DEBUG Processing 68/691 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,799 DEBUG Processing 103/718 atomic regions from SNP 30665 to 31265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,953 DEBUG Processing 172/735 atomic regions from SNP 51373 to 51973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,955 DEBUG Processing 405/840 atomic regions from SNP 121227 to 121827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,041 DEBUG Processing 104/718 atomic regions from SNP 30965 to 31565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,052 DEBUG Processing 69/691 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,197 DEBUG Processing 173/735 atomic regions from SNP 51673 to 52273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,205 DEBUG Processing 406/840 atomic regions from SNP 121527 to 122127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,295 DEBUG Processing 105/718 atomic regions from SNP 31265 to 31865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,308 DEBUG Processing 70/691 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,445 DEBUG Processing 174/735 atomic regions from SNP 51973 to 52573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,467 DEBUG Processing 407/840 atomic regions from SNP 121827 to 122427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,554 DEBUG Processing 106/718 atomic regions from SNP 31565 to 32165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,564 DEBUG Processing 71/691 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,701 DEBUG Processing 175/735 atomic regions from SNP 52273 to 52873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,725 DEBUG Processing 408/840 atomic regions from SNP 122127 to 122727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,793 DEBUG Processing 107/718 atomic regions from SNP 31865 to 32465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,818 DEBUG Processing 72/691 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,820 DEBUG Subchromosome time: 450.79244830831885, subchromosome SNPs: 335677 2025-01-31 09:49:36,821 DEBUG Estimated BADs: [0.45, 2.72, 0.68, 0.34, 5.44, 0.45, 2.72, 1.36, 10.88, 0.45, 2.72, 1.36, 4.08, 1.36, 4.08, 0.68, 13.59, 1.36, 8.16, 0.68, 1.36, 2.72, 13.59, 2.72, 5.44, 0.68, 0.34, 1.36, 0.27, 2.72, 1.36, 0.34, 1.36, 4.08, 1.36, 0.34, 2.72, 0.27, 1.36, 2.72, 1.36, 5.44, 1.36, 13.59, 1.36, 6.80, 2.72, 1.36, 5.44, 2.72] SNP counts: [10521, 722, 11299, 23525, 167, 4143, 10983, 8700, 143, 12897, 1269, 10092, 2814, 5022, 4680, 12304, 190, 3554, 2386, 9643, 6708, 1712, 598, 11796, 1812, 7707, 9260, 6297, 16756, 3386, 4185, 3302, 11316, 10633, 5934, 6559, 1235, 8425, 2397, 31511, 4654, 2542, 10485, 277, 1993, 3441, 7199, 10404, 2197, 5902] SNP IDs counts: [10521, 722, 11299, 23525, 167, 4143, 10983, 8700, 143, 12897, 1269, 10092, 2814, 5022, 4680, 12304, 190, 3554, 2386, 9643, 6708, 1712, 598, 11796, 1812, 7707, 9260, 6297, 16756, 3386, 4185, 3302, 11316, 10633, 5934, 6559, 1235, 8425, 2397, 31511, 4654, 2542, 10485, 277, 1993, 3441, 7199, 10404, 2197, 5902] Critical gap: 763013bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.93Mbp, 16.62Mbp, 30.87Mbp, 30.97Mbp, 33.46Mbp, 39.37Mbp, 44.10Mbp, 44.17Mbp, 52.03Mbp, 52.72Mbp, 58.39Mbp, 59.92Mbp, 62.69Mbp, 65.23Mbp, 72.21Mbp, 72.31Mbp, 74.23Mbp, 75.56Mbp, 81.03Mbp, 84.84Mbp, 86.26Mbp, 86.57Mbp, 92.89Mbp, 93.86Mbp, 98.59Mbp, 104.23Mbp, 107.86Mbp, 118.31Mbp, 120.09Mbp, 122.42Mbp, 124.36Mbp, 130.69Mbp, 136.30Mbp, 139.60Mbp, 143.70Mbp, 144.43Mbp, 149.69Mbp, 151.05Mbp, 168.26Mbp, 170.83Mbp, 172.24Mbp, 178.30Mbp, 178.45Mbp, 179.50Mbp, 181.34Mbp, 185.33Mbp, 190.91Mbp, 192.13Mbp, 195.47Mbp] 2025-01-31 09:49:36,821 DEBUG chr1 time: 450.79326417297125 s 2025-01-31 09:49:36,953 DEBUG Processing 176/735 atomic regions from SNP 52573 to 53173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,984 DEBUG Processing 409/840 atomic regions from SNP 122427 to 123027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,035 DEBUG chr1: Fitting background model for 50 segments 2025-01-31 09:49:37,037 DEBUG Processing 108/718 atomic regions from SNP 32165 to 32765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,075 DEBUG Processing 73/691 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,211 DEBUG Processing 177/735 atomic regions from SNP 52873 to 53473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,252 DEBUG Processing 410/840 atomic regions from SNP 122727 to 123327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,308 DEBUG Processing 109/718 atomic regions from SNP 32465 to 33065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,341 DEBUG Processing 74/691 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,465 DEBUG Processing 178/735 atomic regions from SNP 53173 to 53773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,511 DEBUG Processing 411/840 atomic regions from SNP 123027 to 123627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,555 DEBUG Processing 110/718 atomic regions from SNP 32765 to 33365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,601 DEBUG Processing 75/691 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,722 DEBUG Processing 179/735 atomic regions from SNP 53473 to 54073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,768 DEBUG Processing 412/840 atomic regions from SNP 123327 to 123927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,801 DEBUG Processing 111/718 atomic regions from SNP 33065 to 33665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,858 DEBUG Processing 76/691 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,979 DEBUG Processing 180/735 atomic regions from SNP 53773 to 54373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,030 DEBUG Processing 413/840 atomic regions from SNP 123627 to 124227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,048 DEBUG Processing 112/718 atomic regions from SNP 33365 to 33965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,112 DEBUG Processing 77/691 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,238 DEBUG Processing 181/735 atomic regions from SNP 54073 to 54673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,308 DEBUG Processing 414/840 atomic regions from SNP 123927 to 124527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,315 DEBUG Processing 113/718 atomic regions from SNP 33665 to 34265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,385 DEBUG Processing 78/691 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,492 DEBUG Processing 182/735 atomic regions from SNP 54373 to 54973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,572 DEBUG Processing 114/718 atomic regions from SNP 33965 to 34565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,580 DEBUG Processing 415/840 atomic regions from SNP 124227 to 124827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,652 DEBUG Processing 79/691 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,756 DEBUG Processing 183/735 atomic regions from SNP 54673 to 55273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,830 DEBUG Processing 115/718 atomic regions from SNP 34265 to 34865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,853 DEBUG Processing 416/840 atomic regions from SNP 124527 to 125127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,918 DEBUG Processing 80/691 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,016 DEBUG Processing 184/735 atomic regions from SNP 54973 to 55573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,078 DEBUG Processing 116/718 atomic regions from SNP 34565 to 35165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,121 DEBUG Processing 417/840 atomic regions from SNP 124827 to 125427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,181 DEBUG Processing 81/691 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,275 DEBUG Processing 185/735 atomic regions from SNP 55273 to 55873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,329 DEBUG Processing 117/718 atomic regions from SNP 34865 to 35465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,386 DEBUG Processing 418/840 atomic regions from SNP 125127 to 125727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,444 DEBUG Processing 82/691 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,536 DEBUG Processing 186/735 atomic regions from SNP 55573 to 56173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,576 DEBUG Processing 118/718 atomic regions from SNP 35165 to 35765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,658 DEBUG Processing 419/840 atomic regions from SNP 125427 to 126027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,702 DEBUG Processing 83/691 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,837 DEBUG Processing 187/735 atomic regions from SNP 55873 to 56473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,857 DEBUG Processing 119/718 atomic regions from SNP 35465 to 36065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,935 DEBUG Processing 420/840 atomic regions from SNP 125727 to 126327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,955 DEBUG Processing 84/691 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,091 DEBUG Processing 188/735 atomic regions from SNP 56173 to 56773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,125 DEBUG Processing 120/718 atomic regions from SNP 35765 to 36365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,205 DEBUG Processing 421/840 atomic regions from SNP 126027 to 126627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,209 DEBUG Processing 85/691 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,352 DEBUG Processing 189/735 atomic regions from SNP 56473 to 57073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,404 DEBUG Processing 121/718 atomic regions from SNP 36065 to 36665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,464 DEBUG Processing 86/691 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,475 DEBUG Processing 422/840 atomic regions from SNP 126327 to 126927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,611 DEBUG Processing 190/735 atomic regions from SNP 56773 to 57373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,672 DEBUG Processing 122/718 atomic regions from SNP 36365 to 36965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,726 DEBUG Processing 87/691 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,749 DEBUG Processing 423/840 atomic regions from SNP 126627 to 127227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,866 DEBUG Processing 191/735 atomic regions from SNP 57073 to 57673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,926 DEBUG Processing 123/718 atomic regions from SNP 36665 to 37265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,993 DEBUG Processing 88/691 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,032 DEBUG Processing 424/840 atomic regions from SNP 126927 to 127527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,165 DEBUG Processing 192/735 atomic regions from SNP 57373 to 57973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,257 DEBUG Processing 124/718 atomic regions from SNP 36965 to 37565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,356 DEBUG Processing 89/691 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,411 DEBUG Processing 425/840 atomic regions from SNP 127227 to 127827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,528 DEBUG Processing 193/735 atomic regions from SNP 57673 to 58273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,626 DEBUG Processing 125/718 atomic regions from SNP 37265 to 37865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,718 DEBUG Processing 90/691 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,754 DEBUG Processing 426/840 atomic regions from SNP 127527 to 128127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,845 DEBUG Processing 194/735 atomic regions from SNP 57973 to 58573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,901 DEBUG Processing 126/718 atomic regions from SNP 37565 to 38165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,014 DEBUG Processing 91/691 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,062 DEBUG Processing 427/840 atomic regions from SNP 127827 to 128427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,153 DEBUG Processing 195/735 atomic regions from SNP 58273 to 58873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,177 DEBUG Processing 127/718 atomic regions from SNP 37865 to 38465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,279 DEBUG Processing 92/691 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,336 DEBUG Processing 428/840 atomic regions from SNP 128127 to 128727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,411 DEBUG Processing 196/735 atomic regions from SNP 58573 to 59173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,433 DEBUG Processing 128/718 atomic regions from SNP 38165 to 38765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,583 DEBUG Processing 93/691 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,632 DEBUG Processing 429/840 atomic regions from SNP 128427 to 129027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,701 DEBUG Processing 197/735 atomic regions from SNP 58873 to 59473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,751 DEBUG Processing 129/718 atomic regions from SNP 38465 to 39065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,893 DEBUG Processing 94/691 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,929 DEBUG Processing 430/840 atomic regions from SNP 128727 to 129327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,981 DEBUG Processing 198/735 atomic regions from SNP 59173 to 59773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,039 DEBUG Processing 130/718 atomic regions from SNP 38765 to 39365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,157 DEBUG Processing 95/691 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,207 DEBUG Processing 431/840 atomic regions from SNP 129027 to 129627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,251 DEBUG Processing 199/735 atomic regions from SNP 59473 to 60073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,341 DEBUG Processing 131/718 atomic regions from SNP 39065 to 39665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,460 DEBUG Processing 96/691 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,527 DEBUG Processing 432/840 atomic regions from SNP 129327 to 129927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,591 DEBUG Processing 200/735 atomic regions from SNP 59773 to 60373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,624 DEBUG Processing 132/718 atomic regions from SNP 39365 to 39965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,757 DEBUG Processing 97/691 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,832 DEBUG Processing 433/840 atomic regions from SNP 129627 to 130227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,848 DEBUG Processing 201/735 atomic regions from SNP 60073 to 60673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,895 DEBUG Processing 133/718 atomic regions from SNP 39665 to 40265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,026 DEBUG Processing 98/691 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,133 DEBUG Processing 202/735 atomic regions from SNP 60373 to 60973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,151 DEBUG Processing 434/840 atomic regions from SNP 129927 to 130527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,165 DEBUG Processing 134/718 atomic regions from SNP 39965 to 40565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,284 DEBUG Processing 99/691 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,384 DEBUG Processing 203/735 atomic regions from SNP 60673 to 61273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,415 DEBUG Processing 135/718 atomic regions from SNP 40265 to 40865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,424 DEBUG Processing 435/840 atomic regions from SNP 130227 to 130827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,540 DEBUG Processing 100/691 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,641 DEBUG Processing 204/735 atomic regions from SNP 60973 to 61573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,670 DEBUG Processing 136/718 atomic regions from SNP 40565 to 41165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,702 DEBUG Processing 436/840 atomic regions from SNP 130527 to 131127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,799 DEBUG Processing 101/691 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,892 DEBUG Processing 205/735 atomic regions from SNP 61273 to 61873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,919 DEBUG Processing 137/718 atomic regions from SNP 40865 to 41465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,969 DEBUG Processing 437/840 atomic regions from SNP 130827 to 131427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,053 DEBUG Processing 102/691 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,144 DEBUG Processing 206/735 atomic regions from SNP 61573 to 62173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,173 DEBUG Processing 138/718 atomic regions from SNP 41165 to 41765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,243 DEBUG Processing 438/840 atomic regions from SNP 131127 to 131727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,308 DEBUG Processing 103/691 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,393 DEBUG Processing 207/735 atomic regions from SNP 61873 to 62473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,416 DEBUG Processing 139/718 atomic regions from SNP 41465 to 42065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,511 DEBUG Processing 439/840 atomic regions from SNP 131427 to 132027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,570 DEBUG Processing 104/691 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,648 DEBUG Processing 208/735 atomic regions from SNP 62173 to 62773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,653 DEBUG Processing 140/718 atomic regions from SNP 41765 to 42365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,777 DEBUG Processing 440/840 atomic regions from SNP 131727 to 132327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,832 DEBUG Processing 105/691 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,889 DEBUG Processing 141/718 atomic regions from SNP 42065 to 42665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,905 DEBUG Processing 209/735 atomic regions from SNP 62473 to 63073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,038 DEBUG Processing 441/840 atomic regions from SNP 132027 to 132627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,096 DEBUG Processing 106/691 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,128 DEBUG Processing 142/718 atomic regions from SNP 42365 to 42965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,159 DEBUG Processing 210/735 atomic regions from SNP 62773 to 63373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,294 DEBUG Processing 442/840 atomic regions from SNP 132327 to 132927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,371 DEBUG Processing 143/718 atomic regions from SNP 42665 to 43265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,377 DEBUG Processing 107/691 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,416 DEBUG Processing 211/735 atomic regions from SNP 63073 to 63673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,551 DEBUG Processing 443/840 atomic regions from SNP 132627 to 133227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,620 DEBUG Processing 144/718 atomic regions from SNP 42965 to 43565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,660 DEBUG Processing 108/691 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,679 DEBUG Processing 212/735 atomic regions from SNP 63373 to 63973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,812 DEBUG Processing 444/840 atomic regions from SNP 132927 to 133527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,867 DEBUG Processing 145/718 atomic regions from SNP 43265 to 43865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,939 DEBUG Processing 109/691 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,958 DEBUG Processing 213/735 atomic regions from SNP 63673 to 64273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,075 DEBUG Processing 445/840 atomic regions from SNP 133227 to 133827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,118 DEBUG Processing 146/718 atomic regions from SNP 43565 to 44165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,235 DEBUG Processing 110/691 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,249 DEBUG Processing 214/735 atomic regions from SNP 63973 to 64573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,334 DEBUG Processing 446/840 atomic regions from SNP 133527 to 134127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,366 DEBUG Processing 147/718 atomic regions from SNP 43865 to 44465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,519 DEBUG Processing 215/735 atomic regions from SNP 64273 to 64873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,527 DEBUG Processing 111/691 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,601 DEBUG Processing 447/840 atomic regions from SNP 133827 to 134427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,620 DEBUG Processing 148/718 atomic regions from SNP 44165 to 44765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,777 DEBUG Processing 216/735 atomic regions from SNP 64573 to 65173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,815 DEBUG Processing 112/691 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,868 DEBUG Processing 448/840 atomic regions from SNP 134127 to 134727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,870 DEBUG Processing 149/718 atomic regions from SNP 44465 to 45065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,030 DEBUG Processing 217/735 atomic regions from SNP 64873 to 65473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,103 DEBUG Processing 113/691 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,124 DEBUG Processing 150/718 atomic regions from SNP 44765 to 45365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,141 DEBUG Processing 449/840 atomic regions from SNP 134427 to 135027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,276 DEBUG Processing 218/735 atomic regions from SNP 65173 to 65773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,388 DEBUG Processing 151/718 atomic regions from SNP 45065 to 45665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,399 DEBUG Processing 114/691 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,425 DEBUG Processing 450/840 atomic regions from SNP 134727 to 135327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,514 DEBUG Processing 219/735 atomic regions from SNP 65473 to 66073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,637 DEBUG Processing 152/718 atomic regions from SNP 45365 to 45965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,686 DEBUG Processing 115/691 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,703 DEBUG Processing 451/840 atomic regions from SNP 135027 to 135627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,761 DEBUG Processing 220/735 atomic regions from SNP 65773 to 66373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,886 DEBUG Processing 153/718 atomic regions from SNP 45665 to 46265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,965 DEBUG Processing 116/691 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,971 DEBUG Processing 452/840 atomic regions from SNP 135327 to 135927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,025 DEBUG Processing 221/735 atomic regions from SNP 66073 to 66673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,148 DEBUG Processing 154/718 atomic regions from SNP 45965 to 46565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,230 DEBUG Processing 117/691 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,270 DEBUG Processing 453/840 atomic regions from SNP 135627 to 136227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,302 DEBUG Processing 222/735 atomic regions from SNP 66373 to 66973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,399 DEBUG Processing 155/718 atomic regions from SNP 46265 to 46865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,476 DEBUG Processing 118/691 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,551 DEBUG Processing 223/735 atomic regions from SNP 66673 to 67273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,565 DEBUG Processing 454/840 atomic regions from SNP 135927 to 136527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,659 DEBUG Processing 156/718 atomic regions from SNP 46565 to 47165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,728 DEBUG Processing 119/691 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,812 DEBUG Processing 224/735 atomic regions from SNP 66973 to 67573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,850 DEBUG Processing 455/840 atomic regions from SNP 136227 to 136827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,912 DEBUG Processing 157/718 atomic regions from SNP 46865 to 47465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,978 DEBUG Processing 120/691 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,064 DEBUG Processing 225/735 atomic regions from SNP 67273 to 67873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,146 DEBUG Processing 456/840 atomic regions from SNP 136527 to 137127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,174 DEBUG Processing 158/718 atomic regions from SNP 47165 to 47765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,228 DEBUG Processing 121/691 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,346 DEBUG Processing 226/735 atomic regions from SNP 67573 to 68173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,424 DEBUG Processing 457/840 atomic regions from SNP 136827 to 137427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,427 DEBUG Processing 159/718 atomic regions from SNP 47465 to 48065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,500 DEBUG Processing 122/691 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,616 DEBUG Processing 227/735 atomic regions from SNP 67873 to 68473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,686 DEBUG Processing 160/718 atomic regions from SNP 47765 to 48365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,704 DEBUG Processing 458/840 atomic regions from SNP 137127 to 137727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,787 DEBUG Processing 123/691 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,885 DEBUG Processing 228/735 atomic regions from SNP 68173 to 68773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,939 DEBUG Processing 161/718 atomic regions from SNP 48065 to 48665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,977 DEBUG Processing 459/840 atomic regions from SNP 137427 to 138027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,066 DEBUG Processing 124/691 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,144 DEBUG Processing 229/735 atomic regions from SNP 68473 to 69073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,183 DEBUG Processing 162/718 atomic regions from SNP 48365 to 48965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,242 DEBUG Processing 460/840 atomic regions from SNP 137727 to 138327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,316 DEBUG Processing 125/691 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,387 DEBUG Processing 230/735 atomic regions from SNP 68773 to 69373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,428 DEBUG Processing 163/718 atomic regions from SNP 48665 to 49265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,510 DEBUG Processing 461/840 atomic regions from SNP 138027 to 138627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,564 DEBUG Processing 126/691 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,634 DEBUG Processing 231/735 atomic regions from SNP 69073 to 69673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,675 DEBUG Processing 164/718 atomic regions from SNP 48965 to 49565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,778 DEBUG Processing 462/840 atomic regions from SNP 138327 to 138927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,812 DEBUG Processing 127/691 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,879 DEBUG Processing 232/735 atomic regions from SNP 69373 to 69973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,922 DEBUG Processing 165/718 atomic regions from SNP 49265 to 49865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,051 DEBUG Processing 463/840 atomic regions from SNP 138627 to 139227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,064 DEBUG Processing 128/691 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,127 DEBUG Processing 233/735 atomic regions from SNP 69673 to 70273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,189 DEBUG Processing 166/718 atomic regions from SNP 49565 to 50165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,321 DEBUG Processing 129/691 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,321 DEBUG Processing 464/840 atomic regions from SNP 138927 to 139527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,408 DEBUG Processing 234/735 atomic regions from SNP 69973 to 70573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,450 DEBUG Processing 167/718 atomic regions from SNP 49865 to 50465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,575 DEBUG Processing 130/691 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,589 DEBUG Processing 465/840 atomic regions from SNP 139227 to 139827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,683 DEBUG Processing 235/735 atomic regions from SNP 70273 to 70873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,715 DEBUG Processing 168/718 atomic regions from SNP 50165 to 50765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,829 DEBUG Processing 131/691 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,855 DEBUG Processing 466/840 atomic regions from SNP 139527 to 140127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,935 DEBUG Processing 236/735 atomic regions from SNP 70573 to 71173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,986 DEBUG Processing 169/718 atomic regions from SNP 50465 to 51065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,084 DEBUG Processing 132/691 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,144 DEBUG Processing 467/840 atomic regions from SNP 139827 to 140427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,189 DEBUG Processing 237/735 atomic regions from SNP 70873 to 71473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,242 DEBUG Processing 170/718 atomic regions from SNP 50765 to 51365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,352 DEBUG Processing 133/691 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,439 DEBUG Processing 238/735 atomic regions from SNP 71173 to 71773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,444 DEBUG Processing 468/840 atomic regions from SNP 140127 to 140727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,497 DEBUG Processing 171/718 atomic regions from SNP 51065 to 51665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,625 DEBUG Processing 134/691 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,689 DEBUG Processing 239/735 atomic regions from SNP 71473 to 72073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,713 DEBUG Processing 469/840 atomic regions from SNP 140427 to 141027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,749 DEBUG Processing 172/718 atomic regions from SNP 51365 to 51965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,879 DEBUG Processing 135/691 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,942 DEBUG Processing 240/735 atomic regions from SNP 71773 to 72373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,991 DEBUG Processing 470/840 atomic regions from SNP 140727 to 141327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,002 DEBUG Processing 173/718 atomic regions from SNP 51665 to 52265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,132 DEBUG Processing 136/691 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,194 DEBUG Processing 241/735 atomic regions from SNP 72073 to 72673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,258 DEBUG Processing 174/718 atomic regions from SNP 51965 to 52565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,282 DEBUG Processing 471/840 atomic regions from SNP 141027 to 141627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,390 DEBUG Processing 137/691 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,444 DEBUG Processing 242/735 atomic regions from SNP 72373 to 72973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,511 DEBUG Processing 175/718 atomic regions from SNP 52265 to 52865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,558 DEBUG Processing 472/840 atomic regions from SNP 141327 to 141927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,652 DEBUG Processing 138/691 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,697 DEBUG Processing 243/735 atomic regions from SNP 72673 to 73273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,760 DEBUG Processing 176/718 atomic regions from SNP 52565 to 53165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,858 DEBUG Processing 473/840 atomic regions from SNP 141627 to 142227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,914 DEBUG Processing 139/691 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,948 DEBUG Processing 244/735 atomic regions from SNP 72973 to 73573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,005 DEBUG Processing 177/718 atomic regions from SNP 52865 to 53465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,167 DEBUG Processing 474/840 atomic regions from SNP 141927 to 142527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,175 DEBUG Processing 140/691 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,208 DEBUG Processing 245/735 atomic regions from SNP 73273 to 73873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,264 DEBUG Processing 178/718 atomic regions from SNP 53165 to 53765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,434 DEBUG Processing 141/691 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,463 DEBUG Processing 246/735 atomic regions from SNP 73573 to 74173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,464 DEBUG Processing 475/840 atomic regions from SNP 142227 to 142827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,528 DEBUG Processing 179/718 atomic regions from SNP 53465 to 54065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,691 DEBUG Processing 142/691 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,715 DEBUG Processing 247/735 atomic regions from SNP 73873 to 74473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,750 DEBUG Processing 476/840 atomic regions from SNP 142527 to 143127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,781 DEBUG Processing 180/718 atomic regions from SNP 53765 to 54365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,944 DEBUG Processing 143/691 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,965 DEBUG Processing 248/735 atomic regions from SNP 74173 to 74773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,027 DEBUG Processing 477/840 atomic regions from SNP 142827 to 143427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,033 DEBUG Processing 181/718 atomic regions from SNP 54065 to 54665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,199 DEBUG Processing 144/691 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,216 DEBUG Processing 249/735 atomic regions from SNP 74473 to 75073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,281 DEBUG Processing 182/718 atomic regions from SNP 54365 to 54965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,315 DEBUG Processing 478/840 atomic regions from SNP 143127 to 143727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,452 DEBUG Processing 145/691 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,464 DEBUG Processing 250/735 atomic regions from SNP 74773 to 75373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,526 DEBUG Processing 183/718 atomic regions from SNP 54665 to 55265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,594 DEBUG Processing 479/840 atomic regions from SNP 143427 to 144027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,706 DEBUG Processing 146/691 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,716 DEBUG Processing 251/735 atomic regions from SNP 75073 to 75673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,773 DEBUG Processing 184/718 atomic regions from SNP 54965 to 55565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,873 DEBUG Processing 480/840 atomic regions from SNP 143727 to 144327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,962 DEBUG Processing 147/691 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,969 DEBUG Processing 252/735 atomic regions from SNP 75373 to 75973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,021 DEBUG Processing 185/718 atomic regions from SNP 55265 to 55865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,170 DEBUG Processing 481/840 atomic regions from SNP 144027 to 144627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,233 DEBUG Processing 148/691 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,233 DEBUG Processing 253/735 atomic regions from SNP 75673 to 76273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,270 DEBUG Processing 186/718 atomic regions from SNP 55565 to 56165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,471 DEBUG Processing 482/840 atomic regions from SNP 144327 to 144927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,482 DEBUG Processing 254/735 atomic regions from SNP 75973 to 76573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,487 DEBUG Processing 149/691 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,514 DEBUG Processing 187/718 atomic regions from SNP 55865 to 56465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,740 DEBUG Processing 255/735 atomic regions from SNP 76273 to 76873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,756 DEBUG Processing 150/691 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,766 DEBUG Processing 188/718 atomic regions from SNP 56165 to 56765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,768 DEBUG Processing 483/840 atomic regions from SNP 144627 to 145227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,999 DEBUG Processing 256/735 atomic regions from SNP 76573 to 77173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,020 DEBUG Processing 189/718 atomic regions from SNP 56465 to 57065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,024 DEBUG Processing 151/691 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,061 DEBUG Processing 484/840 atomic regions from SNP 144927 to 145527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,253 DEBUG Processing 257/735 atomic regions from SNP 76873 to 77473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,261 DEBUG Processing 190/718 atomic regions from SNP 56765 to 57365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,287 DEBUG Processing 152/691 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,344 DEBUG Processing 485/840 atomic regions from SNP 145227 to 145827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,505 DEBUG Processing 258/735 atomic regions from SNP 77173 to 77773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,517 DEBUG Processing 191/718 atomic regions from SNP 57065 to 57665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,547 DEBUG Processing 153/691 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,635 DEBUG Processing 486/840 atomic regions from SNP 145527 to 146127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,755 DEBUG Processing 259/735 atomic regions from SNP 77473 to 78073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,763 DEBUG Processing 192/718 atomic regions from SNP 57365 to 57965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,799 DEBUG Processing 154/691 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,917 DEBUG Processing 487/840 atomic regions from SNP 145827 to 146427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,003 DEBUG Processing 193/718 atomic regions from SNP 57665 to 58265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,004 DEBUG Processing 260/735 atomic regions from SNP 77773 to 78373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,056 DEBUG Processing 155/691 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,212 DEBUG Processing 488/840 atomic regions from SNP 146127 to 146727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,245 DEBUG Processing 194/718 atomic regions from SNP 57965 to 58565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,252 DEBUG Processing 261/735 atomic regions from SNP 78073 to 78673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,312 DEBUG Processing 156/691 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,491 DEBUG Processing 195/718 atomic regions from SNP 58265 to 58865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,500 DEBUG Processing 262/735 atomic regions from SNP 78373 to 78973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,519 DEBUG Processing 489/840 atomic regions from SNP 146427 to 147027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,570 DEBUG Processing 157/691 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,745 DEBUG Processing 196/718 atomic regions from SNP 58565 to 59165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,759 DEBUG Processing 263/735 atomic regions from SNP 78673 to 79273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,798 DEBUG Processing 490/840 atomic regions from SNP 146727 to 147327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,829 DEBUG Processing 158/691 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,987 DEBUG Processing 197/718 atomic regions from SNP 58865 to 59465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,010 DEBUG Processing 264/735 atomic regions from SNP 78973 to 79573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,066 DEBUG Processing 491/840 atomic regions from SNP 147027 to 147627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,089 DEBUG Processing 159/691 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,234 DEBUG Processing 198/718 atomic regions from SNP 59165 to 59765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,270 DEBUG Processing 265/735 atomic regions from SNP 79273 to 79873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,357 DEBUG Processing 492/840 atomic regions from SNP 147327 to 147927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,358 DEBUG Processing 160/691 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,474 DEBUG Processing 199/718 atomic regions from SNP 59465 to 60065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,523 DEBUG Processing 266/735 atomic regions from SNP 79573 to 80173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,622 DEBUG Processing 161/691 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,630 DEBUG Processing 493/840 atomic regions from SNP 147627 to 148227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,720 DEBUG Processing 200/718 atomic regions from SNP 59765 to 60365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,774 DEBUG Processing 267/735 atomic regions from SNP 79873 to 80473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,890 DEBUG Processing 162/691 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,913 DEBUG Processing 494/840 atomic regions from SNP 147927 to 148527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,966 DEBUG Processing 201/718 atomic regions from SNP 60065 to 60665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,018 DEBUG Processing 268/735 atomic regions from SNP 80173 to 80773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,151 DEBUG Processing 163/691 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,187 DEBUG Processing 495/840 atomic regions from SNP 148227 to 148827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,218 DEBUG Processing 202/718 atomic regions from SNP 60365 to 60965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,271 DEBUG Processing 269/735 atomic regions from SNP 80473 to 81073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,411 DEBUG Processing 164/691 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,460 DEBUG Processing 496/840 atomic regions from SNP 148527 to 149127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,470 DEBUG Processing 203/718 atomic regions from SNP 60665 to 61265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,531 DEBUG Processing 270/735 atomic regions from SNP 80773 to 81373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,671 DEBUG Processing 165/691 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,721 DEBUG Processing 204/718 atomic regions from SNP 60965 to 61565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,732 DEBUG Processing 497/840 atomic regions from SNP 148827 to 149427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,780 DEBUG Processing 271/735 atomic regions from SNP 81073 to 81673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,931 DEBUG Processing 166/691 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,972 DEBUG Processing 205/718 atomic regions from SNP 61265 to 61865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,006 DEBUG Processing 498/840 atomic regions from SNP 149127 to 149727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,032 DEBUG Processing 272/735 atomic regions from SNP 81373 to 81973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,199 DEBUG Processing 167/691 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,224 DEBUG Processing 206/718 atomic regions from SNP 61565 to 62165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,285 DEBUG Processing 273/735 atomic regions from SNP 81673 to 82273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,302 DEBUG Processing 499/840 atomic regions from SNP 149427 to 150027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,462 DEBUG Processing 168/691 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,479 DEBUG Processing 207/718 atomic regions from SNP 61865 to 62465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,537 DEBUG Processing 274/735 atomic regions from SNP 81973 to 82573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,590 DEBUG Processing 500/840 atomic regions from SNP 149727 to 150327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,722 DEBUG Processing 169/691 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,727 DEBUG Processing 208/718 atomic regions from SNP 62165 to 62765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,791 DEBUG Processing 275/735 atomic regions from SNP 82273 to 82873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,855 DEBUG Processing 501/840 atomic regions from SNP 150027 to 150627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,978 DEBUG Processing 209/718 atomic regions from SNP 62465 to 63065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,982 DEBUG Processing 170/691 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,043 DEBUG Processing 276/735 atomic regions from SNP 82573 to 83173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,136 DEBUG Processing 502/840 atomic regions from SNP 150327 to 150927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,232 DEBUG Processing 210/718 atomic regions from SNP 62765 to 63365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,240 DEBUG Processing 171/691 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,296 DEBUG Processing 277/735 atomic regions from SNP 82873 to 83473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,423 DEBUG Processing 503/840 atomic regions from SNP 150627 to 151227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,485 DEBUG Processing 211/718 atomic regions from SNP 63065 to 63665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,515 DEBUG Processing 172/691 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,553 DEBUG Processing 278/735 atomic regions from SNP 83173 to 83773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,710 DEBUG Processing 504/840 atomic regions from SNP 150927 to 151527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,742 DEBUG Processing 212/718 atomic regions from SNP 63365 to 63965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,776 DEBUG Processing 173/691 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,805 DEBUG Processing 279/735 atomic regions from SNP 83473 to 84073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,001 DEBUG Processing 505/840 atomic regions from SNP 151227 to 151827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,003 DEBUG Processing 213/718 atomic regions from SNP 63665 to 64265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,038 DEBUG Processing 174/691 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,063 DEBUG Processing 280/735 atomic regions from SNP 83773 to 84373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,267 DEBUG Processing 214/718 atomic regions from SNP 63965 to 64565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,292 DEBUG Processing 506/840 atomic regions from SNP 151527 to 152127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,305 DEBUG Processing 175/691 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,326 DEBUG Processing 281/735 atomic regions from SNP 84073 to 84673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,521 DEBUG Processing 215/718 atomic regions from SNP 64265 to 64865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,566 DEBUG Processing 176/691 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,567 DEBUG Processing 507/840 atomic regions from SNP 151827 to 152427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,583 DEBUG Processing 282/735 atomic regions from SNP 84373 to 84973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,775 DEBUG Processing 216/718 atomic regions from SNP 64565 to 65165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,830 DEBUG Processing 177/691 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,845 DEBUG Processing 283/735 atomic regions from SNP 84673 to 85273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,859 DEBUG Processing 508/840 atomic regions from SNP 152127 to 152727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,038 DEBUG Processing 217/718 atomic regions from SNP 64865 to 65465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,095 DEBUG Processing 178/691 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,105 DEBUG Processing 284/735 atomic regions from SNP 84973 to 85573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,132 DEBUG Processing 509/840 atomic regions from SNP 152427 to 153027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,294 DEBUG Processing 218/718 atomic regions from SNP 65165 to 65765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,363 DEBUG Processing 179/691 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,365 DEBUG Processing 285/735 atomic regions from SNP 85273 to 85873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,411 DEBUG Processing 510/840 atomic regions from SNP 152727 to 153327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,547 DEBUG Processing 219/718 atomic regions from SNP 65465 to 66065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,622 DEBUG Processing 286/735 atomic regions from SNP 85573 to 86173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,624 DEBUG Processing 180/691 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,674 DEBUG Processing 511/840 atomic regions from SNP 153027 to 153627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,797 DEBUG Processing 220/718 atomic regions from SNP 65765 to 66365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,875 DEBUG Processing 287/735 atomic regions from SNP 85873 to 86473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,882 DEBUG Processing 181/691 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,943 DEBUG Processing 512/840 atomic regions from SNP 153327 to 153927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,040 DEBUG Processing 221/718 atomic regions from SNP 66065 to 66665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,139 DEBUG Processing 288/735 atomic regions from SNP 86173 to 86773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,148 DEBUG Processing 182/691 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,217 DEBUG Processing 513/840 atomic regions from SNP 153627 to 154227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,289 DEBUG Processing 222/718 atomic regions from SNP 66365 to 66965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,395 DEBUG Processing 289/735 atomic regions from SNP 86473 to 87073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,408 DEBUG Processing 183/691 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,491 DEBUG Processing 514/840 atomic regions from SNP 153927 to 154527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,534 DEBUG Processing 223/718 atomic regions from SNP 66665 to 67265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,647 DEBUG Processing 290/735 atomic regions from SNP 86773 to 87373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,666 DEBUG Processing 184/691 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,768 DEBUG Processing 515/840 atomic regions from SNP 154227 to 154827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,788 DEBUG Processing 224/718 atomic regions from SNP 66965 to 67565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,906 DEBUG Processing 291/735 atomic regions from SNP 87073 to 87673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,926 DEBUG Processing 185/691 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,050 DEBUG Processing 516/840 atomic regions from SNP 154527 to 155127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,050 DEBUG Processing 225/718 atomic regions from SNP 67265 to 67865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,166 DEBUG Processing 292/735 atomic regions from SNP 87373 to 87973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,189 DEBUG Processing 186/691 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,305 DEBUG Processing 226/718 atomic regions from SNP 67565 to 68165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,328 DEBUG Processing 517/840 atomic regions from SNP 154827 to 155427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,428 DEBUG Processing 293/735 atomic regions from SNP 87673 to 88273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,461 DEBUG Processing 187/691 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,560 DEBUG Processing 227/718 atomic regions from SNP 67865 to 68465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,606 DEBUG Processing 518/840 atomic regions from SNP 155127 to 155727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,693 DEBUG Processing 294/735 atomic regions from SNP 87973 to 88573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,725 DEBUG Processing 188/691 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,816 DEBUG Processing 228/718 atomic regions from SNP 68165 to 68765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,875 DEBUG Processing 519/840 atomic regions from SNP 155427 to 156027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,952 DEBUG Processing 295/735 atomic regions from SNP 88273 to 88873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,988 DEBUG Processing 189/691 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,065 DEBUG Processing 229/718 atomic regions from SNP 68465 to 69065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,142 DEBUG Processing 520/840 atomic regions from SNP 155727 to 156327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,205 DEBUG Processing 296/735 atomic regions from SNP 88573 to 89173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,247 DEBUG Processing 190/691 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,319 DEBUG Processing 230/718 atomic regions from SNP 68765 to 69365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,424 DEBUG Processing 521/840 atomic regions from SNP 156027 to 156627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,458 DEBUG Processing 297/735 atomic regions from SNP 88873 to 89473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,507 DEBUG Processing 191/691 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,574 DEBUG Processing 231/718 atomic regions from SNP 69065 to 69665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,699 DEBUG Processing 522/840 atomic regions from SNP 156327 to 156927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,708 DEBUG Processing 298/735 atomic regions from SNP 89173 to 89773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,767 DEBUG Processing 192/691 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,814 DEBUG Processing 232/718 atomic regions from SNP 69365 to 69965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,956 DEBUG Processing 299/735 atomic regions from SNP 89473 to 90073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,970 DEBUG Processing 523/840 atomic regions from SNP 156627 to 157227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,029 DEBUG Processing 193/691 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,057 DEBUG Processing 233/718 atomic regions from SNP 69665 to 70265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,210 DEBUG Processing 300/735 atomic regions from SNP 89773 to 90373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,254 DEBUG Processing 524/840 atomic regions from SNP 156927 to 157527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,300 DEBUG Processing 194/691 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,305 DEBUG Processing 234/718 atomic regions from SNP 69965 to 70565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,462 DEBUG Processing 301/735 atomic regions from SNP 90073 to 90673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,553 DEBUG Processing 525/840 atomic regions from SNP 157227 to 157827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,561 DEBUG Processing 235/718 atomic regions from SNP 70265 to 70865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,571 DEBUG Processing 195/691 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,709 DEBUG Processing 302/735 atomic regions from SNP 90373 to 90973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,820 DEBUG Processing 236/718 atomic regions from SNP 70565 to 71165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,836 DEBUG Processing 196/691 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,844 DEBUG Processing 526/840 atomic regions from SNP 157527 to 158127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,955 DEBUG Processing 303/735 atomic regions from SNP 90673 to 91273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,082 DEBUG Processing 237/718 atomic regions from SNP 70865 to 71465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,095 DEBUG Processing 197/691 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,130 DEBUG Processing 527/840 atomic regions from SNP 157827 to 158427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,198 DEBUG Processing 304/735 atomic regions from SNP 90973 to 91573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,335 DEBUG Processing 238/718 atomic regions from SNP 71165 to 71765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,348 DEBUG Processing 198/691 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,399 DEBUG Processing 528/840 atomic regions from SNP 158127 to 158727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,442 DEBUG Processing 305/735 atomic regions from SNP 91273 to 91873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,587 DEBUG Processing 239/718 atomic regions from SNP 71465 to 72065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,602 DEBUG Processing 199/691 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,673 DEBUG Processing 529/840 atomic regions from SNP 158427 to 159027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,696 DEBUG Processing 306/735 atomic regions from SNP 91573 to 92173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,838 DEBUG Processing 240/718 atomic regions from SNP 71765 to 72365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,868 DEBUG Processing 200/691 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,941 DEBUG Processing 530/840 atomic regions from SNP 158727 to 159327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,955 DEBUG Processing 307/735 atomic regions from SNP 91873 to 92473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,088 DEBUG Processing 241/718 atomic regions from SNP 72065 to 72665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,120 DEBUG Processing 201/691 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,210 DEBUG Processing 308/735 atomic regions from SNP 92173 to 92773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,211 DEBUG Processing 531/840 atomic regions from SNP 159027 to 159627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,333 DEBUG Processing 242/718 atomic regions from SNP 72365 to 72965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,372 DEBUG Processing 202/691 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,455 DEBUG Processing 309/735 atomic regions from SNP 92473 to 93073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,472 DEBUG Processing 532/840 atomic regions from SNP 159327 to 159927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,581 DEBUG Processing 243/718 atomic regions from SNP 72665 to 73265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,625 DEBUG Processing 203/691 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,709 DEBUG Processing 310/735 atomic regions from SNP 92773 to 93373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,740 DEBUG Processing 533/840 atomic regions from SNP 159627 to 160227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,837 DEBUG Processing 244/718 atomic regions from SNP 72965 to 73565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,880 DEBUG Processing 204/691 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,957 DEBUG Processing 311/735 atomic regions from SNP 93073 to 93673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,009 DEBUG Processing 534/840 atomic regions from SNP 159927 to 160527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,093 DEBUG Processing 245/718 atomic regions from SNP 73265 to 73865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,126 DEBUG Processing 205/691 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,210 DEBUG Processing 312/735 atomic regions from SNP 93373 to 93973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,282 DEBUG Processing 535/840 atomic regions from SNP 160227 to 160827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,356 DEBUG Processing 246/718 atomic regions from SNP 73565 to 74165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,376 DEBUG Processing 206/691 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,461 DEBUG Processing 313/735 atomic regions from SNP 93673 to 94273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,550 DEBUG Processing 536/840 atomic regions from SNP 160527 to 161127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,606 DEBUG Processing 247/718 atomic regions from SNP 73865 to 74465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,625 DEBUG Processing 207/691 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,730 DEBUG Processing 314/735 atomic regions from SNP 93973 to 94573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,821 DEBUG Processing 537/840 atomic regions from SNP 160827 to 161427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,854 DEBUG Processing 248/718 atomic regions from SNP 74165 to 74765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,869 DEBUG Processing 208/691 atomic regions from SNP 62307 to 62907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,993 DEBUG Processing 315/735 atomic regions from SNP 94273 to 94873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,098 DEBUG Processing 538/840 atomic regions from SNP 161127 to 161727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,107 DEBUG Processing 249/718 atomic regions from SNP 74465 to 75065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,126 DEBUG Processing 209/691 atomic regions from SNP 62607 to 63207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,252 DEBUG Processing 316/735 atomic regions from SNP 94573 to 95173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,363 DEBUG Processing 250/718 atomic regions from SNP 74765 to 75365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,379 DEBUG Processing 210/691 atomic regions from SNP 62907 to 63507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,387 DEBUG Processing 539/840 atomic regions from SNP 161427 to 162027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,513 DEBUG Processing 317/735 atomic regions from SNP 94873 to 95473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,613 DEBUG Processing 251/718 atomic regions from SNP 75065 to 75665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,648 DEBUG Processing 211/691 atomic regions from SNP 63207 to 63807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,674 DEBUG Processing 540/840 atomic regions from SNP 161727 to 162327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,762 DEBUG Processing 318/735 atomic regions from SNP 95173 to 95773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,862 DEBUG Processing 252/718 atomic regions from SNP 75365 to 75965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,935 DEBUG Processing 212/691 atomic regions from SNP 63507 to 64107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,940 DEBUG Processing 541/840 atomic regions from SNP 162027 to 162627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,010 DEBUG Processing 319/735 atomic regions from SNP 95473 to 96073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,115 DEBUG Processing 253/718 atomic regions from SNP 75665 to 76265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,206 DEBUG Processing 213/691 atomic regions from SNP 63807 to 64407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,211 DEBUG Processing 542/840 atomic regions from SNP 162327 to 162927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,286 DEBUG Processing 320/735 atomic regions from SNP 95773 to 96373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,373 DEBUG Processing 254/718 atomic regions from SNP 75965 to 76565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,456 DEBUG Processing 214/691 atomic regions from SNP 64107 to 64707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,475 DEBUG Processing 543/840 atomic regions from SNP 162627 to 163227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,538 DEBUG Processing 321/735 atomic regions from SNP 96073 to 96673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,617 DEBUG Processing 255/718 atomic regions from SNP 76265 to 76865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,701 DEBUG Processing 215/691 atomic regions from SNP 64407 to 65007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,737 DEBUG Processing 544/840 atomic regions from SNP 162927 to 163527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,788 DEBUG Processing 322/735 atomic regions from SNP 96373 to 96973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,861 DEBUG Processing 256/718 atomic regions from SNP 76565 to 77165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,938 DEBUG Processing 216/691 atomic regions from SNP 64707 to 65307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,997 DEBUG Processing 545/840 atomic regions from SNP 163227 to 163827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,056 DEBUG Processing 323/735 atomic regions from SNP 96673 to 97273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,102 DEBUG Processing 257/718 atomic regions from SNP 76865 to 77465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,177 DEBUG Processing 217/691 atomic regions from SNP 65007 to 65607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,258 DEBUG Processing 546/840 atomic regions from SNP 163527 to 164127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,330 DEBUG Processing 324/735 atomic regions from SNP 96973 to 97573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,347 DEBUG Processing 258/718 atomic regions from SNP 77165 to 77765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,416 DEBUG Processing 218/691 atomic regions from SNP 65307 to 65907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,526 DEBUG Processing 547/840 atomic regions from SNP 163827 to 164427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,585 DEBUG Processing 325/735 atomic regions from SNP 97273 to 97873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,592 DEBUG Processing 259/718 atomic regions from SNP 77465 to 78065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,663 DEBUG Processing 219/691 atomic regions from SNP 65607 to 66207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,790 DEBUG Processing 548/840 atomic regions from SNP 164127 to 164727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,835 DEBUG Processing 260/718 atomic regions from SNP 77765 to 78365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,846 DEBUG Processing 326/735 atomic regions from SNP 97573 to 98173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,915 DEBUG Processing 220/691 atomic regions from SNP 65907 to 66507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,050 DEBUG Processing 549/840 atomic regions from SNP 164427 to 165027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,077 DEBUG Processing 261/718 atomic regions from SNP 78065 to 78665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,097 DEBUG Processing 327/735 atomic regions from SNP 97873 to 98473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,166 DEBUG Processing 221/691 atomic regions from SNP 66207 to 66807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,313 DEBUG Processing 550/840 atomic regions from SNP 164727 to 165327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,320 DEBUG Processing 262/718 atomic regions from SNP 78365 to 78965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,352 DEBUG Processing 328/735 atomic regions from SNP 98173 to 98773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,415 DEBUG Processing 222/691 atomic regions from SNP 66507 to 67107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,564 DEBUG Processing 263/718 atomic regions from SNP 78665 to 79265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,573 DEBUG Processing 551/840 atomic regions from SNP 165027 to 165627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,603 DEBUG Processing 329/735 atomic regions from SNP 98473 to 99073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,665 DEBUG Processing 223/691 atomic regions from SNP 66807 to 67407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,821 DEBUG Processing 264/718 atomic regions from SNP 78965 to 79565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,847 DEBUG Processing 552/840 atomic regions from SNP 165327 to 165927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,868 DEBUG Processing 330/735 atomic regions from SNP 98773 to 99373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,933 DEBUG Processing 224/691 atomic regions from SNP 67107 to 67707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,076 DEBUG Processing 265/718 atomic regions from SNP 79265 to 79865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,123 DEBUG Processing 553/840 atomic regions from SNP 165627 to 166227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,151 DEBUG Processing 331/735 atomic regions from SNP 99073 to 99673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,258 DEBUG Processing 225/691 atomic regions from SNP 67407 to 68007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,337 DEBUG Processing 266/718 atomic regions from SNP 79565 to 80165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,392 DEBUG Processing 554/840 atomic regions from SNP 165927 to 166527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,402 DEBUG Processing 332/735 atomic regions from SNP 99373 to 99973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,513 DEBUG Processing 226/691 atomic regions from SNP 67707 to 68307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,586 DEBUG Processing 267/718 atomic regions from SNP 79865 to 80465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,655 DEBUG Processing 555/840 atomic regions from SNP 166227 to 166827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,669 DEBUG Processing 333/735 atomic regions from SNP 99673 to 100273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,769 DEBUG Processing 227/691 atomic regions from SNP 68007 to 68607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,827 DEBUG Processing 268/718 atomic regions from SNP 80165 to 80765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,922 DEBUG Processing 556/840 atomic regions from SNP 166527 to 167127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,946 DEBUG Processing 334/735 atomic regions from SNP 99973 to 100573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,029 DEBUG Processing 228/691 atomic regions from SNP 68307 to 68907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,072 DEBUG Processing 269/718 atomic regions from SNP 80465 to 81065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,184 DEBUG Processing 557/840 atomic regions from SNP 166827 to 167427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,222 DEBUG Processing 335/735 atomic regions from SNP 100273 to 100873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,297 DEBUG Processing 229/691 atomic regions from SNP 68607 to 69207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,313 DEBUG Processing 270/718 atomic regions from SNP 80765 to 81365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,449 DEBUG Processing 558/840 atomic regions from SNP 167127 to 167727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,477 DEBUG Processing 336/735 atomic regions from SNP 100573 to 101173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,560 DEBUG Processing 230/691 atomic regions from SNP 68907 to 69507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,563 DEBUG Processing 271/718 atomic regions from SNP 81065 to 81665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,723 DEBUG Processing 559/840 atomic regions from SNP 167427 to 168027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,741 DEBUG Processing 337/735 atomic regions from SNP 100873 to 101473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,857 DEBUG Processing 272/718 atomic regions from SNP 81365 to 81965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,882 DEBUG Processing 231/691 atomic regions from SNP 69207 to 69807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,986 DEBUG Processing 560/840 atomic regions from SNP 167727 to 168327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,009 DEBUG Processing 338/735 atomic regions from SNP 101173 to 101773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,101 DEBUG Processing 273/718 atomic regions from SNP 81665 to 82265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,147 DEBUG Processing 232/691 atomic regions from SNP 69507 to 70107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,246 DEBUG Processing 561/840 atomic regions from SNP 168027 to 168627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,294 DEBUG Processing 339/735 atomic regions from SNP 101473 to 102073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,344 DEBUG Processing 274/718 atomic regions from SNP 81965 to 82565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,403 DEBUG Processing 233/691 atomic regions from SNP 69807 to 70407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,508 DEBUG Processing 562/840 atomic regions from SNP 168327 to 168927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,575 DEBUG Processing 340/735 atomic regions from SNP 101773 to 102373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,586 DEBUG Processing 275/718 atomic regions from SNP 82265 to 82865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,658 DEBUG Processing 234/691 atomic regions from SNP 70107 to 70707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,768 DEBUG Processing 563/840 atomic regions from SNP 168627 to 169227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,831 DEBUG Processing 276/718 atomic regions from SNP 82565 to 83165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,850 DEBUG Processing 341/735 atomic regions from SNP 102073 to 102673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,915 DEBUG Processing 235/691 atomic regions from SNP 70407 to 71007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,027 DEBUG Processing 564/840 atomic regions from SNP 168927 to 169527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,071 DEBUG Processing 277/718 atomic regions from SNP 82865 to 83465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,108 DEBUG Processing 342/735 atomic regions from SNP 102373 to 102973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,185 DEBUG Processing 236/691 atomic regions from SNP 70707 to 71307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,292 DEBUG Processing 565/840 atomic regions from SNP 169227 to 169827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,319 DEBUG Processing 278/718 atomic regions from SNP 83165 to 83765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,374 DEBUG Processing 343/735 atomic regions from SNP 102673 to 103273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,435 DEBUG Processing 237/691 atomic regions from SNP 71007 to 71607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,562 DEBUG Processing 566/840 atomic regions from SNP 169527 to 170127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,570 DEBUG Processing 279/718 atomic regions from SNP 83465 to 84065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,627 DEBUG Processing 344/735 atomic regions from SNP 102973 to 103573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,687 DEBUG Processing 238/691 atomic regions from SNP 71307 to 71907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,823 DEBUG Processing 280/718 atomic regions from SNP 83765 to 84365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,835 DEBUG Processing 567/840 atomic regions from SNP 169827 to 170427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,892 DEBUG Processing 345/735 atomic regions from SNP 103273 to 103873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,938 DEBUG Processing 239/691 atomic regions from SNP 71607 to 72207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,077 DEBUG Processing 281/718 atomic regions from SNP 84065 to 84665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,105 DEBUG Processing 568/840 atomic regions from SNP 170127 to 170727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,164 DEBUG Processing 346/735 atomic regions from SNP 103573 to 104173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,187 DEBUG Processing 240/691 atomic regions from SNP 71907 to 72507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,329 DEBUG Processing 282/718 atomic regions from SNP 84365 to 84965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,371 DEBUG Processing 569/840 atomic regions from SNP 170427 to 171027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,407 DEBUG Processing 347/735 atomic regions from SNP 103873 to 104473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,432 DEBUG Processing 241/691 atomic regions from SNP 72207 to 72807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,576 DEBUG Processing 283/718 atomic regions from SNP 84665 to 85265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,635 DEBUG Processing 570/840 atomic regions from SNP 170727 to 171327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,651 DEBUG Processing 348/735 atomic regions from SNP 104173 to 104773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,682 DEBUG Processing 242/691 atomic regions from SNP 72507 to 73107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,825 DEBUG Processing 284/718 atomic regions from SNP 84965 to 85565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,897 DEBUG Processing 349/735 atomic regions from SNP 104473 to 105073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,898 DEBUG Processing 571/840 atomic regions from SNP 171027 to 171627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,932 DEBUG Processing 243/691 atomic regions from SNP 72807 to 73407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,073 DEBUG Processing 285/718 atomic regions from SNP 85265 to 85865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,140 DEBUG Processing 350/735 atomic regions from SNP 104773 to 105373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,162 DEBUG Processing 572/840 atomic regions from SNP 171327 to 171927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,175 DEBUG Processing 244/691 atomic regions from SNP 73107 to 73707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,327 DEBUG Processing 286/718 atomic regions from SNP 85565 to 86165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,385 DEBUG Processing 351/735 atomic regions from SNP 105073 to 105673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,422 DEBUG Processing 573/840 atomic regions from SNP 171627 to 172227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,424 DEBUG Processing 245/691 atomic regions from SNP 73407 to 74007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,574 DEBUG Processing 287/718 atomic regions from SNP 85865 to 86465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,626 DEBUG Processing 352/735 atomic regions from SNP 105373 to 105973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,674 DEBUG Processing 246/691 atomic regions from SNP 73707 to 74307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,678 DEBUG Processing 574/840 atomic regions from SNP 171927 to 172527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,817 DEBUG Processing 288/718 atomic regions from SNP 86165 to 86765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,869 DEBUG Processing 353/735 atomic regions from SNP 105673 to 106273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,933 DEBUG Processing 247/691 atomic regions from SNP 74007 to 74607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,944 DEBUG Processing 575/840 atomic regions from SNP 172227 to 172827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,057 DEBUG Processing 289/718 atomic regions from SNP 86465 to 87065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,110 DEBUG Processing 354/735 atomic regions from SNP 105973 to 106573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,191 DEBUG Processing 248/691 atomic regions from SNP 74307 to 74907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,209 DEBUG Processing 576/840 atomic regions from SNP 172527 to 173127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,298 DEBUG Processing 290/718 atomic regions from SNP 86765 to 87365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,350 DEBUG Processing 355/735 atomic regions from SNP 106273 to 106873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,450 DEBUG Processing 249/691 atomic regions from SNP 74607 to 75207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,480 DEBUG Processing 577/840 atomic regions from SNP 172827 to 173427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,540 DEBUG Processing 291/718 atomic regions from SNP 87065 to 87665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,592 DEBUG Processing 356/735 atomic regions from SNP 106573 to 107173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,707 DEBUG Processing 250/691 atomic regions from SNP 74907 to 75507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,753 DEBUG Processing 578/840 atomic regions from SNP 173127 to 173727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,793 DEBUG Processing 292/718 atomic regions from SNP 87365 to 87965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,839 DEBUG Processing 357/735 atomic regions from SNP 106873 to 107473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,967 DEBUG Processing 251/691 atomic regions from SNP 75207 to 75807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,026 DEBUG Processing 579/840 atomic regions from SNP 173427 to 174027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,047 DEBUG Processing 293/718 atomic regions from SNP 87665 to 88265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,086 DEBUG Processing 358/735 atomic regions from SNP 107173 to 107773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,222 DEBUG Processing 252/691 atomic regions from SNP 75507 to 76107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,294 DEBUG Processing 580/840 atomic regions from SNP 173727 to 174327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,298 DEBUG Processing 294/718 atomic regions from SNP 87965 to 88565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,332 DEBUG Processing 359/735 atomic regions from SNP 107473 to 108073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,486 DEBUG Processing 253/691 atomic regions from SNP 75807 to 76407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,551 DEBUG Processing 295/718 atomic regions from SNP 88265 to 88865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,569 DEBUG Processing 581/840 atomic regions from SNP 174027 to 174627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,586 DEBUG Processing 360/735 atomic regions from SNP 107773 to 108373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,745 DEBUG Processing 254/691 atomic regions from SNP 76107 to 76707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,800 DEBUG Processing 296/718 atomic regions from SNP 88565 to 89165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,840 DEBUG Processing 582/840 atomic regions from SNP 174327 to 174927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,842 DEBUG Processing 361/735 atomic regions from SNP 108073 to 108673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,005 DEBUG Processing 255/691 atomic regions from SNP 76407 to 77007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,050 DEBUG Processing 297/718 atomic regions from SNP 88865 to 89465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,099 DEBUG Processing 362/735 atomic regions from SNP 108373 to 108973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,118 DEBUG Processing 583/840 atomic regions from SNP 174627 to 175227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,271 DEBUG Processing 256/691 atomic regions from SNP 76707 to 77307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,317 DEBUG Processing 298/718 atomic regions from SNP 89165 to 89765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,364 DEBUG Processing 363/735 atomic regions from SNP 108673 to 109273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,413 DEBUG Processing 584/840 atomic regions from SNP 174927 to 175527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,527 DEBUG Processing 257/691 atomic regions from SNP 77007 to 77607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,579 DEBUG Processing 299/718 atomic regions from SNP 89465 to 90065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,614 DEBUG Processing 364/735 atomic regions from SNP 108973 to 109573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,689 DEBUG Processing 585/840 atomic regions from SNP 175227 to 175827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,781 DEBUG Processing 258/691 atomic regions from SNP 77307 to 77907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,828 DEBUG Processing 300/718 atomic regions from SNP 89765 to 90365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,872 DEBUG Processing 365/735 atomic regions from SNP 109273 to 109873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,962 DEBUG Processing 586/840 atomic regions from SNP 175527 to 176127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,046 DEBUG Processing 259/691 atomic regions from SNP 77607 to 78207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,080 DEBUG Processing 301/718 atomic regions from SNP 90065 to 90665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,139 DEBUG Processing 366/735 atomic regions from SNP 109573 to 110173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,236 DEBUG Processing 587/840 atomic regions from SNP 175827 to 176427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,312 DEBUG Processing 260/691 atomic regions from SNP 77907 to 78507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,339 DEBUG Processing 302/718 atomic regions from SNP 90365 to 90965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,405 DEBUG Processing 367/735 atomic regions from SNP 109873 to 110473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,516 DEBUG Processing 588/840 atomic regions from SNP 176127 to 176727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,585 DEBUG Processing 261/691 atomic regions from SNP 78207 to 78807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,603 DEBUG Processing 303/718 atomic regions from SNP 90665 to 91265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,673 DEBUG Processing 368/735 atomic regions from SNP 110173 to 110773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,812 DEBUG Processing 589/840 atomic regions from SNP 176427 to 177027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,858 DEBUG Processing 262/691 atomic regions from SNP 78507 to 79107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,873 DEBUG Processing 304/718 atomic regions from SNP 90965 to 91565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,934 DEBUG Processing 369/735 atomic regions from SNP 110473 to 111073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,082 DEBUG Processing 590/840 atomic regions from SNP 176727 to 177327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,120 DEBUG Processing 263/691 atomic regions from SNP 78807 to 79407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,127 DEBUG Processing 305/718 atomic regions from SNP 91265 to 91865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,193 DEBUG Processing 370/735 atomic regions from SNP 110773 to 111373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,357 DEBUG Processing 591/840 atomic regions from SNP 177027 to 177627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,386 DEBUG Processing 264/691 atomic regions from SNP 79107 to 79707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,386 DEBUG Processing 306/718 atomic regions from SNP 91565 to 92165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,451 DEBUG Processing 371/735 atomic regions from SNP 111073 to 111673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,624 DEBUG Processing 592/840 atomic regions from SNP 177327 to 177927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,640 DEBUG Processing 307/718 atomic regions from SNP 91865 to 92465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,649 DEBUG Processing 265/691 atomic regions from SNP 79407 to 80007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,710 DEBUG Processing 372/735 atomic regions from SNP 111373 to 111973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,897 DEBUG Processing 308/718 atomic regions from SNP 92165 to 92765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,897 DEBUG Processing 593/840 atomic regions from SNP 177627 to 178227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,915 DEBUG Processing 266/691 atomic regions from SNP 79707 to 80307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,971 DEBUG Processing 373/735 atomic regions from SNP 111673 to 112273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,155 DEBUG Processing 309/718 atomic regions from SNP 92465 to 93065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,173 DEBUG Processing 267/691 atomic regions from SNP 80007 to 80607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,175 DEBUG Processing 594/840 atomic regions from SNP 177927 to 178527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,226 DEBUG Processing 374/735 atomic regions from SNP 111973 to 112573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,413 DEBUG Processing 310/718 atomic regions from SNP 92765 to 93365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,437 DEBUG Processing 268/691 atomic regions from SNP 80307 to 80907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,463 DEBUG Processing 595/840 atomic regions from SNP 178227 to 178827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,491 DEBUG Processing 375/735 atomic regions from SNP 112273 to 112873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,689 DEBUG Processing 311/718 atomic regions from SNP 93065 to 93665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,739 DEBUG Processing 269/691 atomic regions from SNP 80607 to 81207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,761 DEBUG Processing 596/840 atomic regions from SNP 178527 to 179127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,802 DEBUG Processing 376/735 atomic regions from SNP 112573 to 113173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,985 DEBUG Processing 312/718 atomic regions from SNP 93365 to 93965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,022 DEBUG Processing 270/691 atomic regions from SNP 80907 to 81507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,058 DEBUG Processing 377/735 atomic regions from SNP 112873 to 113473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,061 DEBUG Processing 597/840 atomic regions from SNP 178827 to 179427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,295 DEBUG Processing 313/718 atomic regions from SNP 93665 to 94265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,316 DEBUG Processing 271/691 atomic regions from SNP 81207 to 81807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,329 DEBUG Processing 378/735 atomic regions from SNP 113173 to 113773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,380 DEBUG Processing 598/840 atomic regions from SNP 179127 to 179727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,658 DEBUG Processing 314/718 atomic regions from SNP 93965 to 94565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,674 DEBUG Processing 379/735 atomic regions from SNP 113473 to 114073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,677 DEBUG Processing 272/691 atomic regions from SNP 81507 to 82107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,706 DEBUG Processing 599/840 atomic regions from SNP 179427 to 180027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,922 DEBUG Processing 315/718 atomic regions from SNP 94265 to 94865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,943 DEBUG Processing 380/735 atomic regions from SNP 113773 to 114373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,951 DEBUG Processing 273/691 atomic regions from SNP 81807 to 82407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,994 DEBUG Processing 600/840 atomic regions from SNP 179727 to 180327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,172 DEBUG Processing 316/718 atomic regions from SNP 94565 to 95165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,198 DEBUG Processing 381/735 atomic regions from SNP 114073 to 114673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,209 DEBUG Processing 274/691 atomic regions from SNP 82107 to 82707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,265 DEBUG Processing 601/840 atomic regions from SNP 180027 to 180627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,453 DEBUG Processing 317/718 atomic regions from SNP 94865 to 95465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,458 DEBUG Processing 382/735 atomic regions from SNP 114373 to 114973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,470 DEBUG Processing 275/691 atomic regions from SNP 82407 to 83007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,542 DEBUG Processing 602/840 atomic regions from SNP 180327 to 180927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,721 DEBUG Processing 383/735 atomic regions from SNP 114673 to 115273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,723 DEBUG Processing 318/718 atomic regions from SNP 95165 to 95765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,732 DEBUG Processing 276/691 atomic regions from SNP 82707 to 83307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,825 DEBUG Processing 603/840 atomic regions from SNP 180627 to 181227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,980 DEBUG Processing 319/718 atomic regions from SNP 95465 to 96065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,989 DEBUG Processing 277/691 atomic regions from SNP 83007 to 83607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,998 DEBUG Processing 384/735 atomic regions from SNP 114973 to 115573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,146 DEBUG Processing 604/840 atomic regions from SNP 180927 to 181527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,281 DEBUG Processing 320/718 atomic regions from SNP 95765 to 96365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,292 DEBUG Processing 278/691 atomic regions from SNP 83307 to 83907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,332 DEBUG Processing 385/735 atomic regions from SNP 115273 to 115873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,445 DEBUG Processing 605/840 atomic regions from SNP 181227 to 181827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,549 DEBUG Processing 321/718 atomic regions from SNP 96065 to 96665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,559 DEBUG Processing 279/691 atomic regions from SNP 83607 to 84207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,592 DEBUG Processing 386/735 atomic regions from SNP 115573 to 116173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,735 DEBUG Processing 606/840 atomic regions from SNP 181527 to 182127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,808 DEBUG Processing 322/718 atomic regions from SNP 96365 to 96965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,815 DEBUG Processing 280/691 atomic regions from SNP 83907 to 84507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,848 DEBUG Processing 387/735 atomic regions from SNP 115873 to 116473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,018 DEBUG Processing 607/840 atomic regions from SNP 181827 to 182427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,062 DEBUG Processing 323/718 atomic regions from SNP 96665 to 97265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,081 DEBUG Processing 281/691 atomic regions from SNP 84207 to 84807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,102 DEBUG Processing 388/735 atomic regions from SNP 116173 to 116773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,295 DEBUG Processing 608/840 atomic regions from SNP 182127 to 182727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,317 DEBUG Processing 324/718 atomic regions from SNP 96965 to 97565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,353 DEBUG Processing 389/735 atomic regions from SNP 116473 to 117073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,357 DEBUG Processing 282/691 atomic regions from SNP 84507 to 85107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,577 DEBUG Processing 609/840 atomic regions from SNP 182427 to 183027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,578 DEBUG Processing 325/718 atomic regions from SNP 97265 to 97865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,610 DEBUG Processing 390/735 atomic regions from SNP 116773 to 117373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,621 DEBUG Processing 283/691 atomic regions from SNP 84807 to 85407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,833 DEBUG Processing 326/718 atomic regions from SNP 97565 to 98165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,855 DEBUG Processing 610/840 atomic regions from SNP 182727 to 183327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,865 DEBUG Processing 391/735 atomic regions from SNP 117073 to 117673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,879 DEBUG Processing 284/691 atomic regions from SNP 85107 to 85707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,103 DEBUG Processing 327/718 atomic regions from SNP 97865 to 98465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,135 DEBUG Processing 392/735 atomic regions from SNP 117373 to 117973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,135 DEBUG Processing 611/840 atomic regions from SNP 183027 to 183627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,150 DEBUG Processing 285/691 atomic regions from SNP 85407 to 86007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,358 DEBUG Processing 328/718 atomic regions from SNP 98165 to 98765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,385 DEBUG Processing 393/735 atomic regions from SNP 117673 to 118273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,401 DEBUG Processing 286/691 atomic regions from SNP 85707 to 86307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,407 DEBUG Processing 612/840 atomic regions from SNP 183327 to 183927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,601 DEBUG Processing 329/718 atomic regions from SNP 98465 to 99065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,626 DEBUG Processing 394/735 atomic regions from SNP 117973 to 118573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,651 DEBUG Processing 287/691 atomic regions from SNP 86007 to 86607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,686 DEBUG Processing 613/840 atomic regions from SNP 183627 to 184227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,844 DEBUG Processing 330/718 atomic regions from SNP 98765 to 99365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,865 DEBUG Processing 395/735 atomic regions from SNP 118273 to 118873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,899 DEBUG Processing 288/691 atomic regions from SNP 86307 to 86907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,965 DEBUG Processing 614/840 atomic regions from SNP 183927 to 184527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,083 DEBUG Processing 331/718 atomic regions from SNP 99065 to 99665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,103 DEBUG Processing 396/735 atomic regions from SNP 118573 to 119173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,150 DEBUG Processing 289/691 atomic regions from SNP 86607 to 87207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,243 DEBUG Processing 615/840 atomic regions from SNP 184227 to 184827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,330 DEBUG Processing 332/718 atomic regions from SNP 99365 to 99965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,343 DEBUG Processing 397/735 atomic regions from SNP 118873 to 119473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,404 DEBUG Processing 290/691 atomic regions from SNP 86907 to 87507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,524 DEBUG Processing 616/840 atomic regions from SNP 184527 to 185127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,579 DEBUG Processing 333/718 atomic regions from SNP 99665 to 100265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,588 DEBUG Processing 398/735 atomic regions from SNP 119173 to 119773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,661 DEBUG Processing 291/691 atomic regions from SNP 87207 to 87807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,798 DEBUG Processing 617/840 atomic regions from SNP 184827 to 185427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,838 DEBUG Processing 334/718 atomic regions from SNP 99965 to 100565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,841 DEBUG Processing 399/735 atomic regions from SNP 119473 to 120073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,914 DEBUG Processing 292/691 atomic regions from SNP 87507 to 88107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,075 DEBUG Processing 618/840 atomic regions from SNP 185127 to 185727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,085 DEBUG Processing 400/735 atomic regions from SNP 119773 to 120373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,093 DEBUG Processing 335/718 atomic regions from SNP 100265 to 100865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,172 DEBUG Processing 293/691 atomic regions from SNP 87807 to 88407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,331 DEBUG Processing 401/735 atomic regions from SNP 120073 to 120673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,349 DEBUG Processing 336/718 atomic regions from SNP 100565 to 101165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,349 DEBUG Processing 619/840 atomic regions from SNP 185427 to 186027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,424 DEBUG Processing 294/691 atomic regions from SNP 88107 to 88707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,570 DEBUG Processing 402/735 atomic regions from SNP 120373 to 120973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,601 DEBUG Processing 337/718 atomic regions from SNP 100865 to 101465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,625 DEBUG Processing 620/840 atomic regions from SNP 185727 to 186327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,672 DEBUG Processing 295/691 atomic regions from SNP 88407 to 89007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,805 DEBUG Processing 403/735 atomic regions from SNP 120673 to 121273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,852 DEBUG Processing 338/718 atomic regions from SNP 101165 to 101765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,895 DEBUG Processing 621/840 atomic regions from SNP 186027 to 186627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,907 DEBUG Processing 296/691 atomic regions from SNP 88707 to 89307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,034 DEBUG Processing 404/735 atomic regions from SNP 120973 to 121573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,097 DEBUG Processing 339/718 atomic regions from SNP 101465 to 102065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,148 DEBUG Processing 297/691 atomic regions from SNP 89007 to 89607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,161 DEBUG Processing 622/840 atomic regions from SNP 186327 to 186927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,277 DEBUG Processing 405/735 atomic regions from SNP 121273 to 121873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,356 DEBUG Processing 340/718 atomic regions from SNP 101765 to 102365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,385 DEBUG Processing 298/691 atomic regions from SNP 89307 to 89907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,432 DEBUG Processing 623/840 atomic regions from SNP 186627 to 187227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,504 DEBUG Processing 406/735 atomic regions from SNP 121573 to 122173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,605 DEBUG Processing 341/718 atomic regions from SNP 102065 to 102665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,625 DEBUG Processing 299/691 atomic regions from SNP 89607 to 90207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,699 DEBUG Processing 624/840 atomic regions from SNP 186927 to 187527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,738 DEBUG Processing 407/735 atomic regions from SNP 121873 to 122473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,851 DEBUG Processing 342/718 atomic regions from SNP 102365 to 102965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,876 DEBUG Processing 300/691 atomic regions from SNP 89907 to 90507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,963 DEBUG Processing 625/840 atomic regions from SNP 187227 to 187827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,972 DEBUG Processing 408/735 atomic regions from SNP 122173 to 122773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,100 DEBUG Processing 343/718 atomic regions from SNP 102665 to 103265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,118 DEBUG Processing 301/691 atomic regions from SNP 90207 to 90807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,221 DEBUG Processing 409/735 atomic regions from SNP 122473 to 123073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,226 DEBUG Processing 626/840 atomic regions from SNP 187527 to 188127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,362 DEBUG Processing 344/718 atomic regions from SNP 102965 to 103565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,401 DEBUG Processing 302/691 atomic regions from SNP 90507 to 91107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,465 DEBUG Processing 410/735 atomic regions from SNP 122773 to 123373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,510 DEBUG Processing 627/840 atomic regions from SNP 187827 to 188427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,613 DEBUG Processing 345/718 atomic regions from SNP 103265 to 103865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,669 DEBUG Processing 303/691 atomic regions from SNP 90807 to 91407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,716 DEBUG Processing 411/735 atomic regions from SNP 123073 to 123673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,804 DEBUG Processing 628/840 atomic regions from SNP 188127 to 188727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,886 DEBUG Processing 346/718 atomic regions from SNP 103565 to 104165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,934 DEBUG Processing 304/691 atomic regions from SNP 91107 to 91707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,969 DEBUG Processing 412/735 atomic regions from SNP 123373 to 123973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,144 DEBUG Processing 629/840 atomic regions from SNP 188427 to 189027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,199 DEBUG Processing 347/718 atomic regions from SNP 103865 to 104465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,233 DEBUG Processing 305/691 atomic regions from SNP 91407 to 92007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,238 DEBUG Processing 413/735 atomic regions from SNP 123673 to 124273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,449 DEBUG Processing 630/840 atomic regions from SNP 188727 to 189327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,455 DEBUG Processing 348/718 atomic regions from SNP 104165 to 104765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,493 DEBUG Processing 414/735 atomic regions from SNP 123973 to 124573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,493 DEBUG Processing 306/691 atomic regions from SNP 91707 to 92307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,701 DEBUG Processing 349/718 atomic regions from SNP 104465 to 105065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,738 DEBUG Processing 631/840 atomic regions from SNP 189027 to 189627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,740 DEBUG Processing 415/735 atomic regions from SNP 124273 to 124873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,764 DEBUG Processing 307/691 atomic regions from SNP 92007 to 92607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,951 DEBUG Processing 350/718 atomic regions from SNP 104765 to 105365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,002 DEBUG Processing 416/735 atomic regions from SNP 124573 to 125173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,042 DEBUG Processing 632/840 atomic regions from SNP 189327 to 189927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,054 DEBUG Processing 308/691 atomic regions from SNP 92307 to 92907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,262 DEBUG Processing 351/718 atomic regions from SNP 105065 to 105665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,307 DEBUG Processing 417/735 atomic regions from SNP 124873 to 125473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,359 DEBUG Processing 309/691 atomic regions from SNP 92607 to 93207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,366 DEBUG Processing 633/840 atomic regions from SNP 189627 to 190227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,554 DEBUG Processing 352/718 atomic regions from SNP 105365 to 105965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,643 DEBUG Processing 418/735 atomic regions from SNP 125173 to 125773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,710 DEBUG Processing 310/691 atomic regions from SNP 92907 to 93507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,745 DEBUG Processing 634/840 atomic regions from SNP 189927 to 190527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,893 DEBUG Processing 353/718 atomic regions from SNP 105665 to 106265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,989 DEBUG Processing 419/735 atomic regions from SNP 125473 to 126073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,091 DEBUG Processing 311/691 atomic regions from SNP 93207 to 93807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,133 DEBUG Processing 635/840 atomic regions from SNP 190227 to 190827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,167 DEBUG Processing 354/718 atomic regions from SNP 105965 to 106565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,230 DEBUG Processing 420/735 atomic regions from SNP 125773 to 126373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,364 DEBUG Processing 312/691 atomic regions from SNP 93507 to 94107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,414 DEBUG Processing 636/840 atomic regions from SNP 190527 to 191127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,422 DEBUG Processing 355/718 atomic regions from SNP 106265 to 106865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,474 DEBUG Processing 421/735 atomic regions from SNP 126073 to 126673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,632 DEBUG Processing 313/691 atomic regions from SNP 93807 to 94407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,689 DEBUG Processing 356/718 atomic regions from SNP 106565 to 107165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,693 DEBUG Processing 637/840 atomic regions from SNP 190827 to 191427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,767 DEBUG Processing 422/735 atomic regions from SNP 126373 to 126973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,977 DEBUG Processing 314/691 atomic regions from SNP 94107 to 94707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,987 DEBUG Processing 357/718 atomic regions from SNP 106865 to 107465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,014 DEBUG Processing 638/840 atomic regions from SNP 191127 to 191727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,055 DEBUG Processing 423/735 atomic regions from SNP 126673 to 127273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,352 DEBUG Processing 315/691 atomic regions from SNP 94407 to 95007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,378 DEBUG Processing 358/718 atomic regions from SNP 107165 to 107765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,422 DEBUG Processing 424/735 atomic regions from SNP 126973 to 127573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,430 DEBUG Processing 639/840 atomic regions from SNP 191427 to 192027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,611 DEBUG Processing 316/691 atomic regions from SNP 94707 to 95307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,687 DEBUG Processing 359/718 atomic regions from SNP 107465 to 108065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,797 DEBUG Processing 425/735 atomic regions from SNP 127273 to 127873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,812 DEBUG Processing 640/840 atomic regions from SNP 191727 to 192327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,910 DEBUG Processing 317/691 atomic regions from SNP 95007 to 95607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,026 DEBUG Processing 360/718 atomic regions from SNP 107765 to 108365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,192 DEBUG Processing 426/735 atomic regions from SNP 127573 to 128173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,230 DEBUG Processing 641/840 atomic regions from SNP 192027 to 192627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,256 DEBUG Processing 318/691 atomic regions from SNP 95307 to 95907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,342 DEBUG Processing 361/718 atomic regions from SNP 108065 to 108665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,549 DEBUG Processing 427/735 atomic regions from SNP 127873 to 128473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,567 DEBUG Processing 319/691 atomic regions from SNP 95607 to 96207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,590 DEBUG Processing 642/840 atomic regions from SNP 192327 to 192927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,618 DEBUG Processing 362/718 atomic regions from SNP 108365 to 108965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,850 DEBUG Processing 320/691 atomic regions from SNP 95907 to 96507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,856 DEBUG Processing 428/735 atomic regions from SNP 128173 to 128773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,887 DEBUG Processing 643/840 atomic regions from SNP 192627 to 193227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,905 DEBUG Processing 363/718 atomic regions from SNP 108665 to 109265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,181 DEBUG Processing 321/691 atomic regions from SNP 96207 to 96807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,206 DEBUG Processing 429/735 atomic regions from SNP 128473 to 129073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,222 DEBUG Processing 364/718 atomic regions from SNP 108965 to 109565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,223 DEBUG Processing 644/840 atomic regions from SNP 192927 to 193527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,450 DEBUG Processing 322/691 atomic regions from SNP 96507 to 97107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,466 DEBUG Processing 430/735 atomic regions from SNP 128773 to 129373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,484 DEBUG Processing 365/718 atomic regions from SNP 109265 to 109865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,520 DEBUG Processing 645/840 atomic regions from SNP 193227 to 193827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,699 DEBUG Processing 323/691 atomic regions from SNP 96807 to 97407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,736 DEBUG Processing 431/735 atomic regions from SNP 129073 to 129673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,739 DEBUG Processing 366/718 atomic regions from SNP 109565 to 110165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,815 DEBUG Processing 646/840 atomic regions from SNP 193527 to 194127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,948 DEBUG Processing 324/691 atomic regions from SNP 97107 to 97707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,002 DEBUG Processing 432/735 atomic regions from SNP 129373 to 129973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,015 DEBUG Processing 367/718 atomic regions from SNP 109865 to 110465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,155 DEBUG Processing 647/840 atomic regions from SNP 193827 to 194427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,216 DEBUG Processing 325/691 atomic regions from SNP 97407 to 98007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,270 DEBUG Processing 433/735 atomic regions from SNP 129673 to 130273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,300 DEBUG Processing 368/718 atomic regions from SNP 110165 to 110765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,494 DEBUG Processing 648/840 atomic regions from SNP 194127 to 194727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,501 DEBUG Processing 326/691 atomic regions from SNP 97707 to 98307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,551 DEBUG Processing 434/735 atomic regions from SNP 129973 to 130573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,601 DEBUG Processing 369/718 atomic regions from SNP 110465 to 111065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,805 DEBUG Processing 327/691 atomic regions from SNP 98007 to 98607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,810 DEBUG Processing 649/840 atomic regions from SNP 194427 to 195027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,853 DEBUG Processing 435/735 atomic regions from SNP 130273 to 130873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,966 DEBUG Processing 370/718 atomic regions from SNP 110765 to 111365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,102 DEBUG Processing 328/691 atomic regions from SNP 98307 to 98907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,126 DEBUG Processing 650/840 atomic regions from SNP 194727 to 195327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,139 DEBUG Processing 436/735 atomic regions from SNP 130573 to 131173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,267 DEBUG Processing 371/718 atomic regions from SNP 111065 to 111665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,357 DEBUG Processing 329/691 atomic regions from SNP 98607 to 99207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,389 DEBUG Processing 437/735 atomic regions from SNP 130873 to 131473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,401 DEBUG Processing 651/840 atomic regions from SNP 195027 to 195627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,548 DEBUG Processing 372/718 atomic regions from SNP 111365 to 111965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,598 DEBUG Processing 330/691 atomic regions from SNP 98907 to 99507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,628 DEBUG Processing 438/735 atomic regions from SNP 131173 to 131773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,668 DEBUG Processing 652/840 atomic regions from SNP 195327 to 195927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,825 DEBUG Processing 373/718 atomic regions from SNP 111665 to 112265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,842 DEBUG Processing 331/691 atomic regions from SNP 99207 to 99807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,867 DEBUG Processing 439/735 atomic regions from SNP 131473 to 132073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,935 DEBUG Processing 653/840 atomic regions from SNP 195627 to 196227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,067 DEBUG Processing 374/718 atomic regions from SNP 111965 to 112565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,081 DEBUG Processing 332/691 atomic regions from SNP 99507 to 100107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,130 DEBUG Processing 440/735 atomic regions from SNP 131773 to 132373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,195 DEBUG Processing 654/840 atomic regions from SNP 195927 to 196527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,315 DEBUG Processing 375/718 atomic regions from SNP 112265 to 112865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,317 DEBUG Processing 333/691 atomic regions from SNP 99807 to 100407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,402 DEBUG Processing 441/735 atomic regions from SNP 132073 to 132673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,459 DEBUG Processing 655/840 atomic regions from SNP 196227 to 196827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,551 DEBUG Processing 334/691 atomic regions from SNP 100107 to 100707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,583 DEBUG Processing 376/718 atomic regions from SNP 112565 to 113165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,673 DEBUG Processing 442/735 atomic regions from SNP 132373 to 132973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,714 DEBUG Processing 656/840 atomic regions from SNP 196527 to 197127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,801 DEBUG Processing 335/691 atomic regions from SNP 100407 to 101007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,851 DEBUG Processing 377/718 atomic regions from SNP 112865 to 113465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,944 DEBUG Processing 443/735 atomic regions from SNP 132673 to 133273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,965 DEBUG Processing 657/840 atomic regions from SNP 196827 to 197427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,033 DEBUG Processing 336/691 atomic regions from SNP 100707 to 101307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,096 DEBUG Processing 378/718 atomic regions from SNP 113165 to 113765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,217 DEBUG Processing 444/735 atomic regions from SNP 132973 to 133573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,226 DEBUG Processing 658/840 atomic regions from SNP 197127 to 197727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,270 DEBUG Processing 337/691 atomic regions from SNP 101007 to 101607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,336 DEBUG Processing 379/718 atomic regions from SNP 113465 to 114065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,489 DEBUG Processing 445/735 atomic regions from SNP 133273 to 133873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,511 DEBUG Processing 338/691 atomic regions from SNP 101307 to 101907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,517 DEBUG Processing 659/840 atomic regions from SNP 197427 to 198027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,581 DEBUG Processing 380/718 atomic regions from SNP 113765 to 114365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,748 DEBUG Processing 339/691 atomic regions from SNP 101607 to 102207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,759 DEBUG Processing 446/735 atomic regions from SNP 133573 to 134173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,786 DEBUG Processing 660/840 atomic regions from SNP 197727 to 198327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,834 DEBUG Processing 381/718 atomic regions from SNP 114065 to 114665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,995 DEBUG Processing 340/691 atomic regions from SNP 101907 to 102507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,040 DEBUG Processing 447/735 atomic regions from SNP 133873 to 134473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,054 DEBUG Processing 661/840 atomic regions from SNP 198027 to 198627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,114 DEBUG Processing 382/718 atomic regions from SNP 114365 to 114965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,234 DEBUG Processing 341/691 atomic regions from SNP 102207 to 102807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,320 DEBUG Processing 662/840 atomic regions from SNP 198327 to 198927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,326 DEBUG Processing 448/735 atomic regions from SNP 134173 to 134773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,377 DEBUG Processing 383/718 atomic regions from SNP 114665 to 115265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,476 DEBUG Processing 342/691 atomic regions from SNP 102507 to 103107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,585 DEBUG Processing 663/840 atomic regions from SNP 198627 to 199227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,605 DEBUG Processing 449/735 atomic regions from SNP 134473 to 135073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,618 DEBUG Processing 384/718 atomic regions from SNP 114965 to 115565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,710 DEBUG Processing 343/691 atomic regions from SNP 102807 to 103407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,851 DEBUG Processing 664/840 atomic regions from SNP 198927 to 199527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,866 DEBUG Processing 385/718 atomic regions from SNP 115265 to 115865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,875 DEBUG Processing 450/735 atomic regions from SNP 134773 to 135373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,950 DEBUG Processing 344/691 atomic regions from SNP 103107 to 103707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,108 DEBUG Processing 386/718 atomic regions from SNP 115565 to 116165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,114 DEBUG Processing 665/840 atomic regions from SNP 199227 to 199827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,140 DEBUG Processing 451/735 atomic regions from SNP 135073 to 135673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,191 DEBUG Processing 345/691 atomic regions from SNP 103407 to 104007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,355 DEBUG Processing 387/718 atomic regions from SNP 115865 to 116465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,378 DEBUG Processing 666/840 atomic regions from SNP 199527 to 200127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,413 DEBUG Processing 452/735 atomic regions from SNP 135373 to 135973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,443 DEBUG Processing 346/691 atomic regions from SNP 103707 to 104307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,601 DEBUG Processing 388/718 atomic regions from SNP 116165 to 116765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,646 DEBUG Processing 667/840 atomic regions from SNP 199827 to 200427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,684 DEBUG Processing 347/691 atomic regions from SNP 104007 to 104607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,687 DEBUG Processing 453/735 atomic regions from SNP 135673 to 136273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,845 DEBUG Processing 389/718 atomic regions from SNP 116465 to 117065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,926 DEBUG Processing 454/735 atomic regions from SNP 135973 to 136573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,927 DEBUG Processing 348/691 atomic regions from SNP 104307 to 104907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,931 DEBUG Processing 668/840 atomic regions from SNP 200127 to 200727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,087 DEBUG Processing 390/718 atomic regions from SNP 116765 to 117365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,168 DEBUG Processing 455/735 atomic regions from SNP 136273 to 136873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,175 DEBUG Processing 349/691 atomic regions from SNP 104607 to 105207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,216 DEBUG Processing 669/840 atomic regions from SNP 200427 to 201027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,324 DEBUG Processing 391/718 atomic regions from SNP 117065 to 117665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,407 DEBUG Processing 456/735 atomic regions from SNP 136573 to 137173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,424 DEBUG Processing 350/691 atomic regions from SNP 104907 to 105507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,474 DEBUG Processing 670/840 atomic regions from SNP 200727 to 201327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,563 DEBUG Processing 392/718 atomic regions from SNP 117365 to 117965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,662 DEBUG Processing 457/735 atomic regions from SNP 136873 to 137473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,672 DEBUG Processing 351/691 atomic regions from SNP 105207 to 105807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,725 DEBUG Processing 671/840 atomic regions from SNP 201027 to 201627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,800 DEBUG Processing 393/718 atomic regions from SNP 117665 to 118265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,911 DEBUG Processing 458/735 atomic regions from SNP 137173 to 137773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,916 DEBUG Processing 352/691 atomic regions from SNP 105507 to 106107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,995 DEBUG Processing 672/840 atomic regions from SNP 201327 to 201927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,042 DEBUG Processing 394/718 atomic regions from SNP 117965 to 118565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,154 DEBUG Processing 459/735 atomic regions from SNP 137473 to 138073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,163 DEBUG Processing 353/691 atomic regions from SNP 105807 to 106407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,280 DEBUG Processing 673/840 atomic regions from SNP 201627 to 202227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,319 DEBUG Processing 395/718 atomic regions from SNP 118265 to 118865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,408 DEBUG Processing 460/735 atomic regions from SNP 137773 to 138373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,422 DEBUG Processing 354/691 atomic regions from SNP 106107 to 106707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,565 DEBUG Processing 674/840 atomic regions from SNP 201927 to 202527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,581 DEBUG Processing 396/718 atomic regions from SNP 118565 to 119165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,656 DEBUG Processing 461/735 atomic regions from SNP 138073 to 138673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,669 DEBUG Processing 355/691 atomic regions from SNP 106407 to 107007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,835 DEBUG Processing 397/718 atomic regions from SNP 118865 to 119465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,858 DEBUG Processing 675/840 atomic regions from SNP 202227 to 202827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,902 DEBUG Processing 462/735 atomic regions from SNP 138373 to 138973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,913 DEBUG Processing 356/691 atomic regions from SNP 106707 to 107307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,086 DEBUG Processing 398/718 atomic regions from SNP 119165 to 119765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,145 DEBUG Processing 463/735 atomic regions from SNP 138673 to 139273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,151 DEBUG Processing 676/840 atomic regions from SNP 202527 to 203127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,154 DEBUG Processing 357/691 atomic regions from SNP 107007 to 107607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,324 DEBUG Processing 399/718 atomic regions from SNP 119465 to 120065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,392 DEBUG Processing 464/735 atomic regions from SNP 138973 to 139573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,401 DEBUG Processing 358/691 atomic regions from SNP 107307 to 107907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,449 DEBUG Processing 677/840 atomic regions from SNP 202827 to 203427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,569 DEBUG Processing 400/718 atomic regions from SNP 119765 to 120365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,678 DEBUG Processing 465/735 atomic regions from SNP 139273 to 139873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,707 DEBUG Processing 359/691 atomic regions from SNP 107607 to 108207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,834 DEBUG Processing 678/840 atomic regions from SNP 203127 to 203727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,908 DEBUG Processing 401/718 atomic regions from SNP 120065 to 120665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,016 DEBUG Processing 466/735 atomic regions from SNP 139573 to 140173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,066 DEBUG Processing 360/691 atomic regions from SNP 107907 to 108507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,217 DEBUG Processing 402/718 atomic regions from SNP 120365 to 120965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,236 DEBUG Processing 679/840 atomic regions from SNP 203427 to 204027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,271 DEBUG Processing 467/735 atomic regions from SNP 139873 to 140473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,371 DEBUG Processing 361/691 atomic regions from SNP 108207 to 108807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,597 DEBUG Processing 403/718 atomic regions from SNP 120665 to 121265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,616 DEBUG Processing 468/735 atomic regions from SNP 140173 to 140773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,646 DEBUG Processing 680/840 atomic regions from SNP 203727 to 204327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,657 DEBUG Processing 362/691 atomic regions from SNP 108507 to 109107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,854 DEBUG Processing 404/718 atomic regions from SNP 120965 to 121565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,879 DEBUG Processing 469/735 atomic regions from SNP 140473 to 141073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,920 DEBUG Processing 363/691 atomic regions from SNP 108807 to 109407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,936 DEBUG Processing 681/840 atomic regions from SNP 204027 to 204627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,097 DEBUG Processing 405/718 atomic regions from SNP 121265 to 121865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,143 DEBUG Processing 470/735 atomic regions from SNP 140773 to 141373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,186 DEBUG Processing 364/691 atomic regions from SNP 109107 to 109707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,203 DEBUG Processing 682/840 atomic regions from SNP 204327 to 204927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,338 DEBUG Processing 406/718 atomic regions from SNP 121565 to 122165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,385 DEBUG Processing 471/735 atomic regions from SNP 141073 to 141673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,442 DEBUG Processing 365/691 atomic regions from SNP 109407 to 110007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,467 DEBUG Processing 683/840 atomic regions from SNP 204627 to 205227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,572 DEBUG Processing 407/718 atomic regions from SNP 121865 to 122465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,617 DEBUG Processing 472/735 atomic regions from SNP 141373 to 141973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,687 DEBUG Processing 366/691 atomic regions from SNP 109707 to 110307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,728 DEBUG Processing 684/840 atomic regions from SNP 204927 to 205527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,809 DEBUG Processing 408/718 atomic regions from SNP 122165 to 122765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,849 DEBUG Processing 473/735 atomic regions from SNP 141673 to 142273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,926 DEBUG Processing 367/691 atomic regions from SNP 110007 to 110607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,993 DEBUG Processing 685/840 atomic regions from SNP 205227 to 205827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,048 DEBUG Processing 409/718 atomic regions from SNP 122465 to 123065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,078 DEBUG Processing 474/735 atomic regions from SNP 141973 to 142573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,171 DEBUG Processing 368/691 atomic regions from SNP 110307 to 110907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,266 DEBUG Processing 686/840 atomic regions from SNP 205527 to 206127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,288 DEBUG Processing 410/718 atomic regions from SNP 122765 to 123365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,304 DEBUG Processing 475/735 atomic regions from SNP 142273 to 142873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,403 DEBUG Processing 369/691 atomic regions from SNP 110607 to 111207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,529 DEBUG Processing 476/735 atomic regions from SNP 142573 to 143173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,536 DEBUG Processing 411/718 atomic regions from SNP 123065 to 123665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,543 DEBUG Processing 687/840 atomic regions from SNP 205827 to 206427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,628 DEBUG Processing 370/691 atomic regions from SNP 110907 to 111507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,760 DEBUG Processing 477/735 atomic regions from SNP 142873 to 143473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,794 DEBUG Processing 412/718 atomic regions from SNP 123365 to 123965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,843 DEBUG Processing 688/840 atomic regions from SNP 206127 to 206727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,868 DEBUG Processing 371/691 atomic regions from SNP 111207 to 111807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,994 DEBUG Processing 478/735 atomic regions from SNP 143173 to 143773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,039 DEBUG Processing 413/718 atomic regions from SNP 123665 to 124265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,100 DEBUG Processing 372/691 atomic regions from SNP 111507 to 112107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,135 DEBUG Processing 689/840 atomic regions from SNP 206427 to 207027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,222 DEBUG Processing 479/735 atomic regions from SNP 143473 to 144073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,274 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:50:56,280 DEBUG Processing 414/718 atomic regions from SNP 123965 to 124565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,334 DEBUG Processing 373/691 atomic regions from SNP 111807 to 112407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,385 DEBUG Processing 690/840 atomic regions from SNP 206727 to 207327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,459 DEBUG Processing 480/735 atomic regions from SNP 143773 to 144373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,530 DEBUG Processing 415/718 atomic regions from SNP 124265 to 124865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,575 DEBUG Processing 374/691 atomic regions from SNP 112107 to 112707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,641 DEBUG Processing 691/840 atomic regions from SNP 207027 to 207627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,714 DEBUG Processing 481/735 atomic regions from SNP 144073 to 144673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,774 DEBUG Processing 416/718 atomic regions from SNP 124565 to 125165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,816 DEBUG Processing 375/691 atomic regions from SNP 112407 to 113007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,894 DEBUG Processing 692/840 atomic regions from SNP 207327 to 207927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,950 DEBUG Processing 482/735 atomic regions from SNP 144373 to 144973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,013 DEBUG Processing 417/718 atomic regions from SNP 124865 to 125465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,053 DEBUG Processing 376/691 atomic regions from SNP 112707 to 113307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,157 DEBUG Processing 693/840 atomic regions from SNP 207627 to 208227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,188 DEBUG Processing 483/735 atomic regions from SNP 144673 to 145273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,254 DEBUG Processing 418/718 atomic regions from SNP 125165 to 125765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,287 DEBUG Processing 377/691 atomic regions from SNP 113007 to 113607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,417 DEBUG Processing 694/840 atomic regions from SNP 207927 to 208527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,427 DEBUG Processing 484/735 atomic regions from SNP 144973 to 145573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,495 DEBUG Processing 419/718 atomic regions from SNP 125465 to 126065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,526 DEBUG Processing 378/691 atomic regions from SNP 113307 to 113907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,655 DEBUG Processing 485/735 atomic regions from SNP 145273 to 145873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,680 DEBUG Processing 695/840 atomic regions from SNP 208227 to 208827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,736 DEBUG Processing 420/718 atomic regions from SNP 125765 to 126365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,757 DEBUG Processing 379/691 atomic regions from SNP 113607 to 114207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,882 DEBUG Processing 486/735 atomic regions from SNP 145573 to 146173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,962 DEBUG Processing 696/840 atomic regions from SNP 208527 to 209127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,985 DEBUG Processing 421/718 atomic regions from SNP 126065 to 126665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,002 DEBUG Processing 380/691 atomic regions from SNP 113907 to 114507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,105 DEBUG Processing 487/735 atomic regions from SNP 145873 to 146473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,232 DEBUG Processing 422/718 atomic regions from SNP 126365 to 126965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,234 DEBUG Processing 381/691 atomic regions from SNP 114207 to 114807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,247 DEBUG Processing 697/840 atomic regions from SNP 208827 to 209427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,331 DEBUG Processing 488/735 atomic regions from SNP 146173 to 146773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,467 DEBUG Processing 382/691 atomic regions from SNP 114507 to 115107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,478 DEBUG Processing 423/718 atomic regions from SNP 126665 to 127265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,543 DEBUG Processing 698/840 atomic regions from SNP 209127 to 209727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,556 DEBUG Processing 489/735 atomic regions from SNP 146473 to 147073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,707 DEBUG Processing 383/691 atomic regions from SNP 114807 to 115407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,724 DEBUG Processing 424/718 atomic regions from SNP 126965 to 127565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,789 DEBUG Processing 490/735 atomic regions from SNP 146773 to 147373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,840 DEBUG Processing 699/840 atomic regions from SNP 209427 to 210027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,939 DEBUG Processing 384/691 atomic regions from SNP 115107 to 115707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,958 DEBUG Processing 425/718 atomic regions from SNP 127265 to 127865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,028 DEBUG Processing 491/735 atomic regions from SNP 147073 to 147673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,142 DEBUG Processing 700/840 atomic regions from SNP 209727 to 210327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,176 DEBUG Processing 385/691 atomic regions from SNP 115407 to 116007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,201 DEBUG Processing 426/718 atomic regions from SNP 127565 to 128165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,265 DEBUG Processing 492/735 atomic regions from SNP 147373 to 147973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,412 DEBUG Processing 386/691 atomic regions from SNP 115707 to 116307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,448 DEBUG Processing 701/840 atomic regions from SNP 210027 to 210627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,448 DEBUG Processing 427/718 atomic regions from SNP 127865 to 128465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,515 DEBUG Processing 493/735 atomic regions from SNP 147673 to 148273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,654 DEBUG Processing 387/691 atomic regions from SNP 116007 to 116607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,699 DEBUG Processing 428/718 atomic regions from SNP 128165 to 128765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,739 DEBUG Processing 702/840 atomic regions from SNP 210327 to 210927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,763 DEBUG Processing 494/735 atomic regions from SNP 147973 to 148573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,947 DEBUG Processing 388/691 atomic regions from SNP 116307 to 116907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,988 DEBUG Processing 429/718 atomic regions from SNP 128465 to 129065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,013 DEBUG Processing 495/735 atomic regions from SNP 148273 to 148873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,048 DEBUG Processing 703/840 atomic regions from SNP 210627 to 211227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,192 DEBUG Processing 389/691 atomic regions from SNP 116607 to 117207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,252 DEBUG Processing 496/735 atomic regions from SNP 148573 to 149173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,265 DEBUG Processing 430/718 atomic regions from SNP 128765 to 129365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,321 DEBUG Processing 704/840 atomic regions from SNP 210927 to 211527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,433 DEBUG Processing 390/691 atomic regions from SNP 116907 to 117507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,490 DEBUG Processing 497/735 atomic regions from SNP 148873 to 149473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,518 DEBUG Processing 431/718 atomic regions from SNP 129065 to 129665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,602 DEBUG Processing 705/840 atomic regions from SNP 211227 to 211827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,672 DEBUG Processing 391/691 atomic regions from SNP 117207 to 117807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,723 DEBUG Processing 498/735 atomic regions from SNP 149173 to 149773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,767 DEBUG Processing 432/718 atomic regions from SNP 129365 to 129965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,873 DEBUG Processing 706/840 atomic regions from SNP 211527 to 212127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,912 DEBUG Processing 392/691 atomic regions from SNP 117507 to 118107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,002 DEBUG Processing 499/735 atomic regions from SNP 149473 to 150073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,050 DEBUG Processing 433/718 atomic regions from SNP 129665 to 130265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,216 DEBUG Processing 707/840 atomic regions from SNP 211827 to 212427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,234 DEBUG Processing 393/691 atomic regions from SNP 117807 to 118407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,294 DEBUG Processing 500/735 atomic regions from SNP 149773 to 150373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,324 DEBUG Processing 434/718 atomic regions from SNP 129965 to 130565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,580 DEBUG Processing 708/840 atomic regions from SNP 212127 to 212727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,612 DEBUG Processing 394/691 atomic regions from SNP 118107 to 118707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,676 DEBUG Processing 501/735 atomic regions from SNP 150073 to 150673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,700 DEBUG Processing 435/718 atomic regions from SNP 130265 to 130865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,901 DEBUG Processing 709/840 atomic regions from SNP 212427 to 213027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,908 DEBUG Processing 395/691 atomic regions from SNP 118407 to 119007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,018 DEBUG Processing 502/735 atomic regions from SNP 150373 to 150973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,068 DEBUG Processing 436/718 atomic regions from SNP 130565 to 131165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,174 DEBUG Processing 396/691 atomic regions from SNP 118707 to 119307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,208 DEBUG Processing 710/840 atomic regions from SNP 212727 to 213327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,285 DEBUG Processing 503/735 atomic regions from SNP 150673 to 151273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,364 DEBUG Processing 437/718 atomic regions from SNP 130865 to 131465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,497 DEBUG Processing 397/691 atomic regions from SNP 119007 to 119607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,541 DEBUG Processing 711/840 atomic regions from SNP 213027 to 213627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,564 DEBUG Processing 504/735 atomic regions from SNP 150973 to 151573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,627 DEBUG Processing 438/718 atomic regions from SNP 131165 to 131765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,747 DEBUG Processing 398/691 atomic regions from SNP 119307 to 119907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,800 DEBUG Processing 712/840 atomic regions from SNP 213327 to 213927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,810 DEBUG Processing 505/735 atomic regions from SNP 151273 to 151873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,880 DEBUG Processing 439/718 atomic regions from SNP 131465 to 132065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,998 DEBUG Processing 399/691 atomic regions from SNP 119607 to 120207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,048 DEBUG Processing 506/735 atomic regions from SNP 151573 to 152173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,057 DEBUG Processing 713/840 atomic regions from SNP 213627 to 214227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,121 DEBUG Processing 440/718 atomic regions from SNP 131765 to 132365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,242 DEBUG Processing 400/691 atomic regions from SNP 119907 to 120507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,323 DEBUG Processing 507/735 atomic regions from SNP 151873 to 152473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,333 DEBUG Processing 714/840 atomic regions from SNP 213927 to 214527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,369 DEBUG Processing 441/718 atomic regions from SNP 132065 to 132665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,473 DEBUG Processing 401/691 atomic regions from SNP 120207 to 120807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,580 DEBUG Processing 508/735 atomic regions from SNP 152173 to 152773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,621 DEBUG Processing 442/718 atomic regions from SNP 132365 to 132965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,621 DEBUG Processing 715/840 atomic regions from SNP 214227 to 214827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,705 DEBUG Processing 402/691 atomic regions from SNP 120507 to 121107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,817 DEBUG Processing 509/735 atomic regions from SNP 152473 to 153073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,867 DEBUG Processing 443/718 atomic regions from SNP 132665 to 133265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,907 DEBUG Processing 716/840 atomic regions from SNP 214527 to 215127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,945 DEBUG Processing 403/691 atomic regions from SNP 120807 to 121407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,058 DEBUG Processing 510/735 atomic regions from SNP 152773 to 153373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,133 DEBUG Processing 444/718 atomic regions from SNP 132965 to 133565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,186 DEBUG Processing 717/840 atomic regions from SNP 214827 to 215427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,194 DEBUG Processing 404/691 atomic regions from SNP 121107 to 121707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,303 DEBUG Processing 511/735 atomic regions from SNP 153073 to 153673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,440 DEBUG Processing 445/718 atomic regions from SNP 133265 to 133865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,490 DEBUG Processing 405/691 atomic regions from SNP 121407 to 122007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,501 DEBUG Processing 718/840 atomic regions from SNP 215127 to 215727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,622 DEBUG Processing 512/735 atomic regions from SNP 153373 to 153973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,750 DEBUG Processing 446/718 atomic regions from SNP 133565 to 134165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,770 DEBUG Processing 406/691 atomic regions from SNP 121707 to 122307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,790 DEBUG Processing 719/840 atomic regions from SNP 215427 to 216027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,875 DEBUG Processing 513/735 atomic regions from SNP 153673 to 154273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,056 DEBUG Processing 447/718 atomic regions from SNP 133865 to 134465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,056 DEBUG Processing 407/691 atomic regions from SNP 122007 to 122607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,114 DEBUG Processing 720/840 atomic regions from SNP 215727 to 216327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,120 DEBUG Processing 514/735 atomic regions from SNP 153973 to 154573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,360 DEBUG Processing 408/691 atomic regions from SNP 122307 to 122907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,389 DEBUG Processing 448/718 atomic regions from SNP 134165 to 134765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,427 DEBUG Processing 515/735 atomic regions from SNP 154273 to 154873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,501 DEBUG Processing 721/840 atomic regions from SNP 216027 to 216627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,644 DEBUG Processing 409/691 atomic regions from SNP 122607 to 123207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,689 DEBUG Processing 449/718 atomic regions from SNP 134465 to 135065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,691 DEBUG Processing 516/735 atomic regions from SNP 154573 to 155173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,769 DEBUG Processing 722/840 atomic regions from SNP 216327 to 216927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,912 DEBUG Processing 410/691 atomic regions from SNP 122907 to 123507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,945 DEBUG Processing 517/735 atomic regions from SNP 154873 to 155473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,962 DEBUG Processing 450/718 atomic regions from SNP 134765 to 135365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,071 DEBUG Processing 723/840 atomic regions from SNP 216627 to 217227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,158 DEBUG Processing 411/691 atomic regions from SNP 123207 to 123807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,175 DEBUG Processing 518/735 atomic regions from SNP 155173 to 155773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,202 DEBUG Processing 451/718 atomic regions from SNP 135065 to 135665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,358 DEBUG Processing 724/840 atomic regions from SNP 216927 to 217527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,409 DEBUG Processing 412/691 atomic regions from SNP 123507 to 124107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,430 DEBUG Processing 519/735 atomic regions from SNP 155473 to 156073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,481 DEBUG Processing 452/718 atomic regions from SNP 135365 to 135965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,618 DEBUG Processing 725/840 atomic regions from SNP 217227 to 217827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,649 DEBUG Processing 413/691 atomic regions from SNP 123807 to 124407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,679 DEBUG Processing 520/735 atomic regions from SNP 155773 to 156373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,764 DEBUG Processing 453/718 atomic regions from SNP 135665 to 136265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,881 DEBUG Processing 726/840 atomic regions from SNP 217527 to 218127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,906 DEBUG Processing 414/691 atomic regions from SNP 124107 to 124707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,921 DEBUG Processing 521/735 atomic regions from SNP 156073 to 156673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,038 DEBUG Processing 454/718 atomic regions from SNP 135965 to 136565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,147 DEBUG Processing 727/840 atomic regions from SNP 217827 to 218427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,175 DEBUG Processing 415/691 atomic regions from SNP 124407 to 125007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,188 DEBUG Processing 522/735 atomic regions from SNP 156373 to 156973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,305 DEBUG Processing 455/718 atomic regions from SNP 136265 to 136865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,401 DEBUG Processing 728/840 atomic regions from SNP 218127 to 218727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,416 DEBUG Processing 416/691 atomic regions from SNP 124707 to 125307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,431 DEBUG Processing 523/735 atomic regions from SNP 156673 to 157273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,549 DEBUG Processing 456/718 atomic regions from SNP 136565 to 137165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,668 DEBUG Processing 729/840 atomic regions from SNP 218427 to 219027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,669 DEBUG Processing 417/691 atomic regions from SNP 125007 to 125607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,698 DEBUG Processing 524/735 atomic regions from SNP 156973 to 157573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,795 DEBUG Processing 457/718 atomic regions from SNP 136865 to 137465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,914 DEBUG Processing 418/691 atomic regions from SNP 125307 to 125907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,940 DEBUG Processing 730/840 atomic regions from SNP 218727 to 219327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,940 DEBUG Processing 525/735 atomic regions from SNP 157273 to 157873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,045 DEBUG Processing 458/718 atomic regions from SNP 137165 to 137765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,179 DEBUG Processing 526/735 atomic regions from SNP 157573 to 158173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,179 DEBUG Processing 419/691 atomic regions from SNP 125607 to 126207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,212 DEBUG Processing 731/840 atomic regions from SNP 219027 to 219627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,290 DEBUG Processing 459/718 atomic regions from SNP 137465 to 138065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,420 DEBUG Processing 527/735 atomic regions from SNP 157873 to 158473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,432 DEBUG Processing 420/691 atomic regions from SNP 125907 to 126507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,483 DEBUG Processing 732/840 atomic regions from SNP 219327 to 219927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,541 DEBUG Processing 460/718 atomic regions from SNP 137765 to 138365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,659 DEBUG Processing 528/735 atomic regions from SNP 158173 to 158773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,675 DEBUG Processing 421/691 atomic regions from SNP 126207 to 126807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,754 DEBUG Processing 733/840 atomic regions from SNP 219627 to 220227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,793 DEBUG Processing 461/718 atomic regions from SNP 138065 to 138665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,895 DEBUG Processing 529/735 atomic regions from SNP 158473 to 159073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,917 DEBUG Processing 422/691 atomic regions from SNP 126507 to 127107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,024 DEBUG Processing 734/840 atomic regions from SNP 219927 to 220527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,047 DEBUG Processing 462/718 atomic regions from SNP 138365 to 138965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,137 DEBUG Processing 530/735 atomic regions from SNP 158773 to 159373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,158 DEBUG Processing 423/691 atomic regions from SNP 126807 to 127407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,302 DEBUG Processing 463/718 atomic regions from SNP 138665 to 139265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,305 DEBUG Processing 735/840 atomic regions from SNP 220227 to 220827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,374 DEBUG Processing 531/735 atomic regions from SNP 159073 to 159673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,403 DEBUG Processing 424/691 atomic regions from SNP 127107 to 127707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,568 DEBUG Processing 464/718 atomic regions from SNP 138965 to 139565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,580 DEBUG Processing 736/840 atomic regions from SNP 220527 to 221127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,611 DEBUG Processing 532/735 atomic regions from SNP 159373 to 159973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,671 DEBUG Processing 425/691 atomic regions from SNP 127407 to 128007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,827 DEBUG Processing 465/718 atomic regions from SNP 139265 to 139865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,858 DEBUG Processing 737/840 atomic regions from SNP 220827 to 221427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,860 DEBUG Processing 533/735 atomic regions from SNP 159673 to 160273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,953 DEBUG Processing 426/691 atomic regions from SNP 127707 to 128307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,083 DEBUG Processing 466/718 atomic regions from SNP 139565 to 140165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,104 DEBUG Processing 534/735 atomic regions from SNP 159973 to 160573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,136 DEBUG Processing 738/840 atomic regions from SNP 221127 to 221727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,216 DEBUG Processing 427/691 atomic regions from SNP 128007 to 128607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,377 DEBUG Processing 467/718 atomic regions from SNP 139865 to 140465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,406 DEBUG Processing 535/735 atomic regions from SNP 160273 to 160873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,466 DEBUG Processing 739/840 atomic regions from SNP 221427 to 222027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,538 DEBUG Processing 428/691 atomic regions from SNP 128307 to 128907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,674 DEBUG Processing 468/718 atomic regions from SNP 140165 to 140765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,687 DEBUG Processing 536/735 atomic regions from SNP 160573 to 161173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,821 DEBUG Processing 740/840 atomic regions from SNP 221727 to 222327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,862 DEBUG Processing 429/691 atomic regions from SNP 128607 to 129207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,997 DEBUG Processing 537/735 atomic regions from SNP 160873 to 161473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,000 DEBUG Processing 469/718 atomic regions from SNP 140465 to 141065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,124 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:51:11,126 DEBUG chr14: Signal quantile: 0.993. signal threshold: 10. Best RMSEA: 0.018 2025-01-31 09:51:11,177 DEBUG Processing 430/691 atomic regions from SNP 128907 to 129507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,192 DEBUG Processing 741/840 atomic regions from SNP 222027 to 222627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,246 DEBUG Processing 538/735 atomic regions from SNP 161173 to 161773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,264 DEBUG Processing 470/718 atomic regions from SNP 140765 to 141365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,447 DEBUG Processing 431/691 atomic regions from SNP 129207 to 129807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,473 DEBUG Processing 742/840 atomic regions from SNP 222327 to 222927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,488 DEBUG Processing 539/735 atomic regions from SNP 161473 to 162073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,522 DEBUG Processing 471/718 atomic regions from SNP 141065 to 141665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,701 DEBUG Processing 432/691 atomic regions from SNP 129507 to 130107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,730 DEBUG Processing 540/735 atomic regions from SNP 161773 to 162373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,757 DEBUG Processing 743/840 atomic regions from SNP 222627 to 223227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,782 DEBUG Processing 472/718 atomic regions from SNP 141365 to 141965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,950 DEBUG Processing 433/691 atomic regions from SNP 129807 to 130407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,963 DEBUG Processing 541/735 atomic regions from SNP 162073 to 162673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,035 DEBUG Processing 744/840 atomic regions from SNP 222927 to 223527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,038 DEBUG Processing 473/718 atomic regions from SNP 141665 to 142265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,211 DEBUG Processing 542/735 atomic regions from SNP 162373 to 162973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,225 DEBUG Processing 434/691 atomic regions from SNP 130107 to 130707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,306 DEBUG Processing 474/718 atomic regions from SNP 141965 to 142565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,322 DEBUG Processing 745/840 atomic regions from SNP 223227 to 223827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,451 DEBUG Processing 543/735 atomic regions from SNP 162673 to 163273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,482 DEBUG Processing 435/691 atomic regions from SNP 130407 to 131007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,576 DEBUG Processing 475/718 atomic regions from SNP 142265 to 142865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,607 DEBUG Processing 746/840 atomic regions from SNP 223527 to 224127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,689 DEBUG Processing 544/735 atomic regions from SNP 162973 to 163573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,751 DEBUG Processing 436/691 atomic regions from SNP 130707 to 131307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,836 DEBUG Processing 476/718 atomic regions from SNP 142565 to 143165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,879 DEBUG Processing 747/840 atomic regions from SNP 223827 to 224427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,919 DEBUG Processing 545/735 atomic regions from SNP 163273 to 163873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,008 DEBUG Processing 437/691 atomic regions from SNP 131007 to 131607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,086 DEBUG Processing 477/718 atomic regions from SNP 142865 to 143465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,140 DEBUG Processing 748/840 atomic regions from SNP 224127 to 224727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,152 DEBUG Processing 546/735 atomic regions from SNP 163573 to 164173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,244 DEBUG Processing 438/691 atomic regions from SNP 131307 to 131907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,338 DEBUG Processing 478/718 atomic regions from SNP 143165 to 143765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,388 DEBUG Processing 547/735 atomic regions from SNP 163873 to 164473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,407 DEBUG Processing 749/840 atomic regions from SNP 224427 to 225027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,477 DEBUG chr14 total SNP count: 196268 2025-01-31 09:51:13,477 DEBUG chr14 length: 124902244 2025-01-31 09:51:13,477 DEBUG ----------------------------------------- 2025-01-31 09:51:13,478 INFO Processing SNPs in chr14 2025-01-31 09:51:13,486 DEBUG Processing 439/691 atomic regions from SNP 131607 to 132207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,597 DEBUG Processing 479/718 atomic regions from SNP 143465 to 144065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,627 DEBUG Processing 548/735 atomic regions from SNP 164173 to 164773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,676 DEBUG Processing 750/840 atomic regions from SNP 224727 to 225327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,724 DEBUG Processing 440/691 atomic regions from SNP 131907 to 132507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,820 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 131), (131, 196268)] 2025-01-31 09:51:13,845 DEBUG Processing 480/718 atomic regions from SNP 143765 to 144365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,861 DEBUG Processing 549/735 atomic regions from SNP 164473 to 165073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,918 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:13,935 DEBUG Segmenting atomic regions: 2025-01-31 09:51:13,936 DEBUG Processing 751/840 atomic regions from SNP 225027 to 225627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,967 DEBUG Processing 441/691 atomic regions from SNP 132207 to 132807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,032 DEBUG Processing 1/1 atomic regions from SNP 0 to 130 for chr14 (subchromosome 1 of 2). 2025-01-31 09:51:14,038 DEBUG Unique SNPs positions in subchromosome 1: 131 2025-01-31 09:51:14,038 DEBUG Subchromosome time: 0.12070176377892494, subchromosome SNPs: 131 2025-01-31 09:51:14,091 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:14,096 DEBUG Processing 481/718 atomic regions from SNP 144065 to 144665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,105 DEBUG Processing 550/735 atomic regions from SNP 164773 to 165373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,217 DEBUG Processing 752/840 atomic regions from SNP 225327 to 225927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,233 DEBUG Processing 442/691 atomic regions from SNP 132507 to 133107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,402 DEBUG Processing 551/735 atomic regions from SNP 165073 to 165673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,424 DEBUG Processing 482/718 atomic regions from SNP 144365 to 144965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,577 DEBUG Processing 443/691 atomic regions from SNP 132807 to 133407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,583 DEBUG Processing 753/840 atomic regions from SNP 225627 to 226227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,691 DEBUG Processing 552/735 atomic regions from SNP 165373 to 165973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,699 DEBUG Processing 483/718 atomic regions from SNP 144665 to 145265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,814 DEBUG Processing 444/691 atomic regions from SNP 133107 to 133707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,873 DEBUG Processing 754/840 atomic regions from SNP 225927 to 226527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,942 DEBUG Processing 553/735 atomic regions from SNP 165673 to 166273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,962 DEBUG Processing 484/718 atomic regions from SNP 144965 to 145565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,060 DEBUG Processing 445/691 atomic regions from SNP 133407 to 134007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,196 DEBUG Processing 755/840 atomic regions from SNP 226227 to 226827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,271 DEBUG Processing 554/735 atomic regions from SNP 165973 to 166573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,286 DEBUG Processing 485/718 atomic regions from SNP 145265 to 145865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,347 DEBUG Processing 446/691 atomic regions from SNP 133707 to 134307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,546 DEBUG Processing 756/840 atomic regions from SNP 226527 to 227127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,640 DEBUG Processing 555/735 atomic regions from SNP 166273 to 166873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,644 DEBUG Processing 486/718 atomic regions from SNP 145565 to 146165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,681 DEBUG Processing 447/691 atomic regions from SNP 134007 to 134607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,823 DEBUG Processing 757/840 atomic regions from SNP 226827 to 227427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,899 DEBUG Processing 556/735 atomic regions from SNP 166573 to 167173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,903 DEBUG Processing 487/718 atomic regions from SNP 145865 to 146465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,945 DEBUG Processing 448/691 atomic regions from SNP 134307 to 134907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,096 DEBUG Processing 758/840 atomic regions from SNP 227127 to 227727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,146 DEBUG Processing 557/735 atomic regions from SNP 166873 to 167473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,157 DEBUG Processing 488/718 atomic regions from SNP 146165 to 146765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,195 DEBUG Processing 449/691 atomic regions from SNP 134607 to 135207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,359 DEBUG Processing 759/840 atomic regions from SNP 227427 to 228027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,392 DEBUG Processing 558/735 atomic regions from SNP 167173 to 167773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,405 DEBUG Processing 489/718 atomic regions from SNP 146465 to 147065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,444 DEBUG Processing 450/691 atomic regions from SNP 134907 to 135507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,520 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:51:16,620 DEBUG Processing 760/840 atomic regions from SNP 227727 to 228327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,629 DEBUG Processing 559/735 atomic regions from SNP 167473 to 168073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,646 DEBUG Processing 490/718 atomic regions from SNP 146765 to 147365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,693 DEBUG Processing 451/691 atomic regions from SNP 135207 to 135807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,919 DEBUG Processing 560/735 atomic regions from SNP 167773 to 168373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,939 DEBUG Processing 761/840 atomic regions from SNP 228027 to 228627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,942 DEBUG Processing 491/718 atomic regions from SNP 147065 to 147665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,016 DEBUG Processing 452/691 atomic regions from SNP 135507 to 136107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,173 DEBUG Processing 561/735 atomic regions from SNP 168073 to 168673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,191 DEBUG Processing 492/718 atomic regions from SNP 147365 to 147965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,215 DEBUG Processing 762/840 atomic regions from SNP 228327 to 228927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,303 DEBUG Processing 453/691 atomic regions from SNP 135807 to 136407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,445 DEBUG Processing 562/735 atomic regions from SNP 168373 to 168973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,464 DEBUG Processing 493/718 atomic regions from SNP 147665 to 148265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,510 DEBUG Processing 763/840 atomic regions from SNP 228627 to 229227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,539 DEBUG Processing 454/691 atomic regions from SNP 136107 to 136707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,690 DEBUG Processing 563/735 atomic regions from SNP 168673 to 169273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,712 DEBUG Processing 494/718 atomic regions from SNP 147965 to 148565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,786 DEBUG Processing 455/691 atomic regions from SNP 136407 to 137007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,799 DEBUG Processing 764/840 atomic regions from SNP 228927 to 229527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,925 DEBUG Processing 564/735 atomic regions from SNP 168973 to 169573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,953 DEBUG Processing 495/718 atomic regions from SNP 148265 to 148865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,023 DEBUG Processing 456/691 atomic regions from SNP 136707 to 137307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,098 DEBUG Processing 765/840 atomic regions from SNP 229227 to 229827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,159 DEBUG Processing 565/735 atomic regions from SNP 169273 to 169873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,202 DEBUG Processing 496/718 atomic regions from SNP 148565 to 149165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,263 DEBUG Processing 457/691 atomic regions from SNP 137007 to 137607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,393 DEBUG Processing 566/735 atomic regions from SNP 169573 to 170173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,397 DEBUG Processing 766/840 atomic regions from SNP 229527 to 230127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,449 DEBUG Processing 497/718 atomic regions from SNP 148865 to 149465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,500 DEBUG Processing 458/691 atomic regions from SNP 137307 to 137907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,624 DEBUG Processing 567/735 atomic regions from SNP 169873 to 170473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,666 DEBUG Processing 767/840 atomic regions from SNP 229827 to 230427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,688 DEBUG Processing 498/718 atomic regions from SNP 149165 to 149765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,734 DEBUG Processing 459/691 atomic regions from SNP 137607 to 138207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,853 DEBUG Processing 568/735 atomic regions from SNP 170173 to 170773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,927 DEBUG Processing 499/718 atomic regions from SNP 149465 to 150065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,928 DEBUG Processing 768/840 atomic regions from SNP 230127 to 230727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,969 DEBUG Processing 460/691 atomic regions from SNP 137907 to 138507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,080 DEBUG Processing 569/735 atomic regions from SNP 170473 to 171073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,172 DEBUG Processing 500/718 atomic regions from SNP 149765 to 150365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,194 DEBUG Processing 769/840 atomic regions from SNP 230427 to 231027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,204 DEBUG Processing 461/691 atomic regions from SNP 138207 to 138807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,307 DEBUG Processing 570/735 atomic regions from SNP 170773 to 171373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,413 DEBUG Processing 501/718 atomic regions from SNP 150065 to 150665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,448 DEBUG Processing 462/691 atomic regions from SNP 138507 to 139107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,462 DEBUG Processing 770/840 atomic regions from SNP 230727 to 231327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,539 DEBUG Processing 571/735 atomic regions from SNP 171073 to 171673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,657 DEBUG Processing 502/718 atomic regions from SNP 150365 to 150965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,687 DEBUG Processing 463/691 atomic regions from SNP 138807 to 139407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,723 DEBUG Processing 771/840 atomic regions from SNP 231027 to 231627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,766 DEBUG Processing 572/735 atomic regions from SNP 171373 to 171973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,900 DEBUG Processing 503/718 atomic regions from SNP 150665 to 151265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,922 DEBUG Processing 464/691 atomic regions from SNP 139107 to 139707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,976 DEBUG Processing 772/840 atomic regions from SNP 231327 to 231927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,994 DEBUG Processing 573/735 atomic regions from SNP 171673 to 172273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,141 DEBUG Processing 504/718 atomic regions from SNP 150965 to 151565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,156 DEBUG Processing 465/691 atomic regions from SNP 139407 to 140007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,226 DEBUG Processing 574/735 atomic regions from SNP 171973 to 172573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,229 DEBUG Processing 773/840 atomic regions from SNP 231627 to 232227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,380 DEBUG Processing 505/718 atomic regions from SNP 151265 to 151865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,385 DEBUG Processing 466/691 atomic regions from SNP 139707 to 140307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,462 DEBUG Processing 575/735 atomic regions from SNP 172273 to 172873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,489 DEBUG Processing 774/840 atomic regions from SNP 231927 to 232527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,617 DEBUG Processing 506/718 atomic regions from SNP 151565 to 152165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,618 DEBUG Processing 467/691 atomic regions from SNP 140007 to 140607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,700 DEBUG Processing 576/735 atomic regions from SNP 172573 to 173173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,750 DEBUG Processing 775/840 atomic regions from SNP 232227 to 232827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,847 DEBUG Processing 468/691 atomic regions from SNP 140307 to 140907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,854 DEBUG Processing 507/718 atomic regions from SNP 151865 to 152465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,941 DEBUG Processing 577/735 atomic regions from SNP 172873 to 173473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,014 DEBUG Processing 776/840 atomic regions from SNP 232527 to 233127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,079 DEBUG Processing 469/691 atomic regions from SNP 140607 to 141207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,097 DEBUG Processing 508/718 atomic regions from SNP 152165 to 152765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,178 DEBUG Processing 578/735 atomic regions from SNP 173173 to 173773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,275 DEBUG Processing 777/840 atomic regions from SNP 232827 to 233427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,312 DEBUG Processing 470/691 atomic regions from SNP 140907 to 141507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,350 DEBUG Processing 509/718 atomic regions from SNP 152465 to 153065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,431 DEBUG Processing 579/735 atomic regions from SNP 173473 to 174073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,550 DEBUG Processing 778/840 atomic regions from SNP 233127 to 233727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,568 DEBUG Processing 471/691 atomic regions from SNP 141207 to 141807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,620 DEBUG Processing 510/718 atomic regions from SNP 152765 to 153365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,670 DEBUG Processing 580/735 atomic regions from SNP 173773 to 174373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,798 DEBUG Processing 472/691 atomic regions from SNP 141507 to 142107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,809 DEBUG Processing 779/840 atomic regions from SNP 233427 to 234027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,875 DEBUG Processing 511/718 atomic regions from SNP 153065 to 153665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,911 DEBUG Processing 581/735 atomic regions from SNP 174073 to 174673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,030 DEBUG Processing 473/691 atomic regions from SNP 141807 to 142407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,073 DEBUG Processing 780/840 atomic regions from SNP 233727 to 234327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,129 DEBUG Processing 512/718 atomic regions from SNP 153365 to 153965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,152 DEBUG Processing 582/735 atomic regions from SNP 174373 to 174973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,275 DEBUG Processing 474/691 atomic regions from SNP 142107 to 142707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,342 DEBUG Processing 781/840 atomic regions from SNP 234027 to 234627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,386 DEBUG Processing 513/718 atomic regions from SNP 153665 to 154265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,389 DEBUG Processing 583/735 atomic regions from SNP 174673 to 175273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,526 DEBUG Processing 475/691 atomic regions from SNP 142407 to 143007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,605 DEBUG Processing 782/840 atomic regions from SNP 234327 to 234927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,628 DEBUG Processing 584/735 atomic regions from SNP 174973 to 175573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,649 DEBUG Processing 514/718 atomic regions from SNP 153965 to 154565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,782 DEBUG Processing 476/691 atomic regions from SNP 142707 to 143307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,868 DEBUG Processing 585/735 atomic regions from SNP 175273 to 175873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,872 DEBUG Processing 783/840 atomic regions from SNP 234627 to 235227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,926 DEBUG Processing 515/718 atomic regions from SNP 154265 to 154865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,045 DEBUG Processing 477/691 atomic regions from SNP 143007 to 143607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,102 DEBUG Processing 586/735 atomic regions from SNP 175573 to 176173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,138 DEBUG Processing 784/840 atomic regions from SNP 234927 to 235527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,192 DEBUG Processing 516/718 atomic regions from SNP 154565 to 155165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,295 DEBUG Processing 478/691 atomic regions from SNP 143307 to 143907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,336 DEBUG Processing 587/735 atomic regions from SNP 175873 to 176473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,408 DEBUG Processing 785/840 atomic regions from SNP 235227 to 235827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,466 DEBUG Processing 517/718 atomic regions from SNP 154865 to 155465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,537 DEBUG Processing 479/691 atomic regions from SNP 143607 to 144207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,576 DEBUG Processing 588/735 atomic regions from SNP 176173 to 176773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,683 DEBUG Processing 786/840 atomic regions from SNP 235527 to 236127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,743 DEBUG Processing 518/718 atomic regions from SNP 155165 to 155765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,776 DEBUG Processing 480/691 atomic regions from SNP 143907 to 144507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,810 DEBUG Processing 589/735 atomic regions from SNP 176473 to 177073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,949 DEBUG Processing 787/840 atomic regions from SNP 235827 to 236427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,998 DEBUG Processing 519/718 atomic regions from SNP 155465 to 156065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,038 DEBUG Processing 481/691 atomic regions from SNP 144207 to 144807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,048 DEBUG Processing 590/735 atomic regions from SNP 176773 to 177373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,227 DEBUG Processing 788/840 atomic regions from SNP 236127 to 236727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,265 DEBUG Processing 520/718 atomic regions from SNP 155765 to 156365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,291 DEBUG Processing 591/735 atomic regions from SNP 177073 to 177673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,303 DEBUG Processing 482/691 atomic regions from SNP 144507 to 145107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,506 DEBUG Processing 789/840 atomic regions from SNP 236427 to 237027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,517 DEBUG Processing 521/718 atomic regions from SNP 156065 to 156665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,532 DEBUG Processing 592/735 atomic regions from SNP 177373 to 177973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,570 DEBUG Processing 483/691 atomic regions from SNP 144807 to 145407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,768 DEBUG Processing 522/718 atomic regions from SNP 156365 to 156965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,769 DEBUG Processing 593/735 atomic regions from SNP 177673 to 178273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,775 DEBUG Processing 790/840 atomic regions from SNP 236727 to 237327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,833 DEBUG Processing 484/691 atomic regions from SNP 145107 to 145707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,006 DEBUG Processing 594/735 atomic regions from SNP 177973 to 178573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,018 DEBUG Processing 523/718 atomic regions from SNP 156665 to 157265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,045 DEBUG Processing 791/840 atomic regions from SNP 237027 to 237627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,081 DEBUG Processing 485/691 atomic regions from SNP 145407 to 146007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,244 DEBUG Processing 595/735 atomic regions from SNP 178273 to 178873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,273 DEBUG Processing 524/718 atomic regions from SNP 156965 to 157565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,323 DEBUG Processing 792/840 atomic regions from SNP 237327 to 237927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,333 DEBUG Processing 486/691 atomic regions from SNP 145707 to 146307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,483 DEBUG Processing 596/735 atomic regions from SNP 178573 to 179173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,530 DEBUG Processing 525/718 atomic regions from SNP 157265 to 157865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,578 DEBUG Processing 487/691 atomic regions from SNP 146007 to 146607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,603 DEBUG Processing 793/840 atomic regions from SNP 237627 to 238227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,723 DEBUG Processing 597/735 atomic regions from SNP 178873 to 179473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,791 DEBUG Processing 526/718 atomic regions from SNP 157565 to 158165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,824 DEBUG Processing 488/691 atomic regions from SNP 146307 to 146907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,882 DEBUG Processing 794/840 atomic regions from SNP 237927 to 238527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,964 DEBUG Processing 598/735 atomic regions from SNP 179173 to 179773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,046 DEBUG Processing 527/718 atomic regions from SNP 157865 to 158465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,067 DEBUG Processing 489/691 atomic regions from SNP 146607 to 147207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,158 DEBUG Processing 795/840 atomic regions from SNP 238227 to 238827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,206 DEBUG Processing 599/735 atomic regions from SNP 179473 to 180073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,300 DEBUG Processing 528/718 atomic regions from SNP 158165 to 158765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,313 DEBUG Processing 490/691 atomic regions from SNP 146907 to 147507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,439 DEBUG Processing 796/840 atomic regions from SNP 238527 to 239127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,451 DEBUG Processing 600/735 atomic regions from SNP 179773 to 180373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,550 DEBUG Processing 529/718 atomic regions from SNP 158465 to 159065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,554 DEBUG Processing 491/691 atomic regions from SNP 147207 to 147807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,688 DEBUG Processing 601/735 atomic regions from SNP 180073 to 180673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,710 DEBUG Processing 797/840 atomic regions from SNP 238827 to 239427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,792 DEBUG Processing 492/691 atomic regions from SNP 147507 to 148107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,798 DEBUG Processing 530/718 atomic regions from SNP 158765 to 159365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,924 DEBUG Processing 602/735 atomic regions from SNP 180373 to 180973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,979 DEBUG Processing 798/840 atomic regions from SNP 239127 to 239727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,032 DEBUG Processing 493/691 atomic regions from SNP 147807 to 148407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,048 DEBUG Processing 531/718 atomic regions from SNP 159065 to 159665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,159 DEBUG Processing 603/735 atomic regions from SNP 180673 to 181273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,252 DEBUG Processing 799/840 atomic regions from SNP 239427 to 240027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,279 DEBUG Processing 494/691 atomic regions from SNP 148107 to 148707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,303 DEBUG Processing 532/718 atomic regions from SNP 159365 to 159965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,400 DEBUG Processing 604/735 atomic regions from SNP 180973 to 181573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,528 DEBUG Processing 495/691 atomic regions from SNP 148407 to 149007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,532 DEBUG Processing 800/840 atomic regions from SNP 239727 to 240327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,558 DEBUG Processing 533/718 atomic regions from SNP 159665 to 160265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,640 DEBUG Processing 605/735 atomic regions from SNP 181273 to 181873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,761 DEBUG Processing 496/691 atomic regions from SNP 148707 to 149307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,796 DEBUG Processing 801/840 atomic regions from SNP 240027 to 240627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,805 DEBUG Processing 534/718 atomic regions from SNP 159965 to 160565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,877 DEBUG Processing 606/735 atomic regions from SNP 181573 to 182173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,990 DEBUG Processing 497/691 atomic regions from SNP 149007 to 149607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,052 DEBUG Processing 535/718 atomic regions from SNP 160265 to 160865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,064 DEBUG Processing 802/840 atomic regions from SNP 240327 to 240927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,126 DEBUG Processing 607/735 atomic regions from SNP 181873 to 182473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,222 DEBUG Processing 498/691 atomic regions from SNP 149307 to 149907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,316 DEBUG Processing 536/718 atomic regions from SNP 160565 to 161165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,359 DEBUG Processing 803/840 atomic regions from SNP 240627 to 241227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,376 DEBUG Processing 608/735 atomic regions from SNP 182173 to 182773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,459 DEBUG Processing 499/691 atomic regions from SNP 149607 to 150207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,569 DEBUG Processing 537/718 atomic regions from SNP 160865 to 161465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,627 DEBUG Processing 609/735 atomic regions from SNP 182473 to 183073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,633 DEBUG Processing 804/840 atomic regions from SNP 240927 to 241527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,699 DEBUG Processing 500/691 atomic regions from SNP 149907 to 150507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,823 DEBUG Processing 538/718 atomic regions from SNP 161165 to 161765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,881 DEBUG Processing 610/735 atomic regions from SNP 182773 to 183373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,912 DEBUG Processing 805/840 atomic regions from SNP 241227 to 241827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,945 DEBUG Processing 501/691 atomic regions from SNP 150207 to 150807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,073 DEBUG Processing 539/718 atomic regions from SNP 161465 to 162065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,127 DEBUG Processing 611/735 atomic regions from SNP 183073 to 183673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,182 DEBUG Processing 806/840 atomic regions from SNP 241527 to 242127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,188 DEBUG Processing 502/691 atomic regions from SNP 150507 to 151107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,324 DEBUG Processing 540/718 atomic regions from SNP 161765 to 162365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,369 DEBUG Processing 612/735 atomic regions from SNP 183373 to 183973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,431 DEBUG Processing 503/691 atomic regions from SNP 150807 to 151407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,458 DEBUG Processing 807/840 atomic regions from SNP 241827 to 242427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,573 DEBUG Processing 541/718 atomic regions from SNP 162065 to 162665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,611 DEBUG Processing 613/735 atomic regions from SNP 183673 to 184273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,683 DEBUG Processing 504/691 atomic regions from SNP 151107 to 151707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,742 DEBUG Processing 808/840 atomic regions from SNP 242127 to 242727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,828 DEBUG Processing 542/718 atomic regions from SNP 162365 to 162965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,851 DEBUG Processing 614/735 atomic regions from SNP 183973 to 184573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,930 DEBUG Processing 505/691 atomic regions from SNP 151407 to 152007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,017 DEBUG Processing 809/840 atomic regions from SNP 242427 to 243027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,078 DEBUG Processing 543/718 atomic regions from SNP 162665 to 163265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,085 DEBUG Processing 615/735 atomic regions from SNP 184273 to 184873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,174 DEBUG Processing 506/691 atomic regions from SNP 151707 to 152307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,288 DEBUG Processing 810/840 atomic regions from SNP 242727 to 243327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,326 DEBUG Processing 616/735 atomic regions from SNP 184573 to 185173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,327 DEBUG Processing 544/718 atomic regions from SNP 162965 to 163565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,414 DEBUG Processing 507/691 atomic regions from SNP 152007 to 152607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,554 DEBUG Processing 811/840 atomic regions from SNP 243027 to 243627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,568 DEBUG Processing 617/735 atomic regions from SNP 184873 to 185473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,577 DEBUG Processing 545/718 atomic regions from SNP 163265 to 163865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,652 DEBUG Processing 508/691 atomic regions from SNP 152307 to 152907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,809 DEBUG Processing 618/735 atomic regions from SNP 185173 to 185773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,823 DEBUG Processing 812/840 atomic regions from SNP 243327 to 243927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,832 DEBUG Processing 546/718 atomic regions from SNP 163565 to 164165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,888 DEBUG Processing 509/691 atomic regions from SNP 152607 to 153207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,045 DEBUG Processing 619/735 atomic regions from SNP 185473 to 186073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,083 DEBUG Processing 547/718 atomic regions from SNP 163865 to 164465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,092 DEBUG Processing 813/840 atomic regions from SNP 243627 to 244227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,126 DEBUG Processing 510/691 atomic regions from SNP 152907 to 153507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,280 DEBUG Processing 620/735 atomic regions from SNP 185773 to 186373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,334 DEBUG Processing 548/718 atomic regions from SNP 164165 to 164765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,367 DEBUG Processing 814/840 atomic regions from SNP 243927 to 244527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,370 DEBUG Processing 511/691 atomic regions from SNP 153207 to 153807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,514 DEBUG Processing 621/735 atomic regions from SNP 186073 to 186673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,584 DEBUG Processing 549/718 atomic regions from SNP 164465 to 165065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,617 DEBUG Processing 512/691 atomic regions from SNP 153507 to 154107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,637 DEBUG Processing 815/840 atomic regions from SNP 244227 to 244827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,751 DEBUG Processing 622/735 atomic regions from SNP 186373 to 186973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,830 DEBUG Processing 550/718 atomic regions from SNP 164765 to 165365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,872 DEBUG Processing 513/691 atomic regions from SNP 153807 to 154407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,903 DEBUG Processing 816/840 atomic regions from SNP 244527 to 245127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,990 DEBUG Processing 623/735 atomic regions from SNP 186673 to 187273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,083 DEBUG Processing 551/718 atomic regions from SNP 165065 to 165665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,147 DEBUG Processing 514/691 atomic regions from SNP 154107 to 154707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,178 DEBUG Processing 817/840 atomic regions from SNP 244827 to 245427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,222 DEBUG Processing 624/735 atomic regions from SNP 186973 to 187573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,322 DEBUG Processing 552/718 atomic regions from SNP 165365 to 165965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,409 DEBUG Processing 515/691 atomic regions from SNP 154407 to 155007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,452 DEBUG Processing 818/840 atomic regions from SNP 245127 to 245727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,458 DEBUG Processing 625/735 atomic regions from SNP 187273 to 187873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,568 DEBUG Processing 553/718 atomic regions from SNP 165665 to 166265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,657 DEBUG Processing 516/691 atomic regions from SNP 154707 to 155307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,698 DEBUG Processing 626/735 atomic regions from SNP 187573 to 188173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,726 DEBUG Processing 819/840 atomic regions from SNP 245427 to 246027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,816 DEBUG Processing 554/718 atomic regions from SNP 165965 to 166565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,893 DEBUG Processing 517/691 atomic regions from SNP 155007 to 155607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,930 DEBUG Processing 627/735 atomic regions from SNP 187873 to 188473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,995 DEBUG Processing 820/840 atomic regions from SNP 245727 to 246327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,064 DEBUG Processing 555/718 atomic regions from SNP 166265 to 166865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,130 DEBUG Processing 518/691 atomic regions from SNP 155307 to 155907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,164 DEBUG Processing 628/735 atomic regions from SNP 188173 to 188773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,271 DEBUG Processing 821/840 atomic regions from SNP 246027 to 246627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,316 DEBUG Processing 556/718 atomic regions from SNP 166565 to 167165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,369 DEBUG Processing 519/691 atomic regions from SNP 155607 to 156207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,400 DEBUG Processing 629/735 atomic regions from SNP 188473 to 189073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,546 DEBUG Processing 822/840 atomic regions from SNP 246327 to 246927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,582 DEBUG Processing 557/718 atomic regions from SNP 166865 to 167465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,614 DEBUG Processing 520/691 atomic regions from SNP 155907 to 156507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,656 DEBUG Processing 630/735 atomic regions from SNP 188773 to 189373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,823 DEBUG Processing 823/840 atomic regions from SNP 246627 to 247227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,836 DEBUG Processing 558/718 atomic regions from SNP 167165 to 167765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,861 DEBUG Processing 521/691 atomic regions from SNP 156207 to 156807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,897 DEBUG Processing 631/735 atomic regions from SNP 189073 to 189673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,094 DEBUG Processing 559/718 atomic regions from SNP 167465 to 168065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,114 DEBUG Processing 522/691 atomic regions from SNP 156507 to 157107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,131 DEBUG Processing 824/840 atomic regions from SNP 246927 to 247527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,148 DEBUG Processing 632/735 atomic regions from SNP 189373 to 189973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,361 DEBUG Processing 560/718 atomic regions from SNP 167765 to 168365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,373 DEBUG Processing 523/691 atomic regions from SNP 156807 to 157407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,401 DEBUG Processing 633/735 atomic regions from SNP 189673 to 190273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,417 DEBUG Processing 825/840 atomic regions from SNP 247227 to 247827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,634 DEBUG Processing 561/718 atomic regions from SNP 168065 to 168665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,661 DEBUG Processing 524/691 atomic regions from SNP 157107 to 157707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,679 DEBUG Processing 634/735 atomic regions from SNP 189973 to 190573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,714 DEBUG Processing 826/840 atomic regions from SNP 247527 to 248127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,798 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:51:34,800 DEBUG chr9: Signal quantile: 0.988. signal threshold: 10. Best RMSEA: 0.012 2025-01-31 09:51:34,920 DEBUG Processing 562/718 atomic regions from SNP 168365 to 168965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,953 DEBUG Processing 525/691 atomic regions from SNP 157407 to 158007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,963 DEBUG Processing 635/735 atomic regions from SNP 190273 to 190873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,014 DEBUG Processing 827/840 atomic regions from SNP 247827 to 248427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,166 DEBUG Processing 563/718 atomic regions from SNP 168665 to 169265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,214 DEBUG Processing 526/691 atomic regions from SNP 157707 to 158307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,220 DEBUG Processing 636/735 atomic regions from SNP 190573 to 191173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,299 DEBUG Processing 828/840 atomic regions from SNP 248127 to 248727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,419 DEBUG Processing 564/718 atomic regions from SNP 168965 to 169565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,479 DEBUG Processing 637/735 atomic regions from SNP 190873 to 191473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,479 DEBUG Processing 527/691 atomic regions from SNP 158007 to 158607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,574 DEBUG Processing 829/840 atomic regions from SNP 248427 to 249027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,677 DEBUG Processing 565/718 atomic regions from SNP 169265 to 169865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,729 DEBUG Processing 638/735 atomic regions from SNP 191173 to 191773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,735 DEBUG Processing 528/691 atomic regions from SNP 158307 to 158907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,841 DEBUG Processing 830/840 atomic regions from SNP 248727 to 249327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,937 DEBUG Processing 566/718 atomic regions from SNP 169565 to 170165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,979 DEBUG Processing 639/735 atomic regions from SNP 191473 to 192073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,990 DEBUG Processing 529/691 atomic regions from SNP 158607 to 159207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,111 DEBUG Processing 831/840 atomic regions from SNP 249027 to 249627 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,207 DEBUG Processing 567/718 atomic regions from SNP 169865 to 170465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,237 DEBUG Processing 640/735 atomic regions from SNP 191773 to 192373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,253 DEBUG Processing 530/691 atomic regions from SNP 158907 to 159507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,387 DEBUG Processing 832/840 atomic regions from SNP 249327 to 249927 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,458 DEBUG Processing 568/718 atomic regions from SNP 170165 to 170765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,478 DEBUG Processing 641/735 atomic regions from SNP 192073 to 192673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,497 DEBUG Processing 531/691 atomic regions from SNP 159207 to 159807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,654 DEBUG Processing 833/840 atomic regions from SNP 249627 to 250227 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,717 DEBUG Processing 569/718 atomic regions from SNP 170465 to 171065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,720 DEBUG Processing 642/735 atomic regions from SNP 192373 to 192973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,747 DEBUG Processing 532/691 atomic regions from SNP 159507 to 160107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,920 DEBUG Processing 834/840 atomic regions from SNP 249927 to 250527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,967 DEBUG Processing 643/735 atomic regions from SNP 192673 to 193273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,984 DEBUG Processing 570/718 atomic regions from SNP 170765 to 171365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,997 DEBUG Processing 533/691 atomic regions from SNP 159807 to 160407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,191 DEBUG Processing 835/840 atomic regions from SNP 250227 to 250827 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,217 DEBUG Processing 644/735 atomic regions from SNP 192973 to 193573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,233 DEBUG chr9 total SNP count: 214802 2025-01-31 09:51:37,233 DEBUG chr9 length: 124595110 2025-01-31 09:51:37,233 DEBUG ----------------------------------------- 2025-01-31 09:51:37,233 INFO Processing SNPs in chr9 2025-01-31 09:51:37,236 DEBUG Processing 571/718 atomic regions from SNP 171065 to 171665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,258 DEBUG Processing 534/691 atomic regions from SNP 160107 to 160707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,461 DEBUG Processing 645/735 atomic regions from SNP 193273 to 193873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,467 DEBUG Processing 836/840 atomic regions from SNP 250527 to 251127 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,475 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 214802)] 2025-01-31 09:51:37,490 DEBUG Processing 572/718 atomic regions from SNP 171365 to 171965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,515 DEBUG Processing 535/691 atomic regions from SNP 160407 to 161007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,636 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:37,704 DEBUG Processing 646/735 atomic regions from SNP 193573 to 194173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,730 DEBUG Processing 837/840 atomic regions from SNP 250827 to 251427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,757 DEBUG Processing 573/718 atomic regions from SNP 171665 to 172265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,775 DEBUG Processing 536/691 atomic regions from SNP 160707 to 161307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,972 DEBUG Processing 647/735 atomic regions from SNP 193873 to 194473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,015 DEBUG Processing 838/840 atomic regions from SNP 251127 to 251727 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,039 DEBUG Processing 537/691 atomic regions from SNP 161007 to 161607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,041 DEBUG Processing 574/718 atomic regions from SNP 171965 to 172565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,225 DEBUG Processing 648/735 atomic regions from SNP 194173 to 194773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,294 DEBUG Processing 839/840 atomic regions from SNP 251427 to 252027 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,295 DEBUG Processing 538/691 atomic regions from SNP 161307 to 161907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,328 DEBUG Processing 575/718 atomic regions from SNP 172265 to 172865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,465 DEBUG Processing 649/735 atomic regions from SNP 194473 to 195073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,550 DEBUG Processing 539/691 atomic regions from SNP 161607 to 162207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,569 DEBUG Processing 840/840 atomic regions from SNP 251727 to 252327 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,605 DEBUG Processing 576/718 atomic regions from SNP 172565 to 173165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,704 DEBUG Processing 650/735 atomic regions from SNP 194773 to 195373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,711 DEBUG Unique SNPs positions in subchromosome 1: 252328 2025-01-31 09:51:38,718 DEBUG Segmenting atomic regions: 2025-01-31 09:51:38,807 DEBUG Processing 540/691 atomic regions from SNP 161907 to 162507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,815 DEBUG Processing 1/652 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,884 DEBUG Processing 577/718 atomic regions from SNP 172865 to 173465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,940 DEBUG Processing 651/735 atomic regions from SNP 195073 to 195673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,048 DEBUG Processing 2/652 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,065 DEBUG Processing 541/691 atomic regions from SNP 162207 to 162807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,149 DEBUG Processing 578/718 atomic regions from SNP 173165 to 173765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,181 DEBUG Processing 652/735 atomic regions from SNP 195373 to 195973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,289 DEBUG Processing 3/652 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,332 DEBUG Processing 542/691 atomic regions from SNP 162507 to 163107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,422 DEBUG Processing 579/718 atomic regions from SNP 173465 to 174065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,426 DEBUG Processing 653/735 atomic regions from SNP 195673 to 196273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,529 DEBUG Processing 4/652 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,622 DEBUG Processing 543/691 atomic regions from SNP 162807 to 163407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,670 DEBUG Processing 654/735 atomic regions from SNP 195973 to 196573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,686 DEBUG Processing 580/718 atomic regions from SNP 173765 to 174365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,794 DEBUG Processing 5/652 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,887 DEBUG Processing 544/691 atomic regions from SNP 163107 to 163707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,912 DEBUG Processing 655/735 atomic regions from SNP 196273 to 196873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,934 DEBUG Processing 581/718 atomic regions from SNP 174065 to 174665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,026 DEBUG Processing 6/652 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,130 DEBUG Processing 545/691 atomic regions from SNP 163407 to 164007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,150 DEBUG Processing 656/735 atomic regions from SNP 196573 to 197173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,174 DEBUG Processing 582/718 atomic regions from SNP 174365 to 174965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,253 DEBUG Processing 7/652 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,371 DEBUG Processing 546/691 atomic regions from SNP 163707 to 164307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,410 DEBUG Processing 657/735 atomic regions from SNP 196873 to 197473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,421 DEBUG Processing 583/718 atomic regions from SNP 174665 to 175265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,486 DEBUG Processing 8/652 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,613 DEBUG Processing 547/691 atomic regions from SNP 164007 to 164607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,677 DEBUG Processing 658/735 atomic regions from SNP 197173 to 197773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,692 DEBUG Processing 584/718 atomic regions from SNP 174965 to 175565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,726 DEBUG Processing 9/652 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,857 DEBUG Processing 548/691 atomic regions from SNP 164307 to 164907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,927 DEBUG Processing 659/735 atomic regions from SNP 197473 to 198073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,959 DEBUG Processing 585/718 atomic regions from SNP 175265 to 175865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,963 DEBUG Processing 10/652 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,097 DEBUG Processing 549/691 atomic regions from SNP 164607 to 165207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,182 DEBUG Processing 660/735 atomic regions from SNP 197773 to 198373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,205 DEBUG Processing 11/652 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,224 DEBUG Processing 586/718 atomic regions from SNP 175565 to 176165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,364 DEBUG Processing 550/691 atomic regions from SNP 164907 to 165507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,449 DEBUG Processing 12/652 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,459 DEBUG Processing 661/735 atomic regions from SNP 198073 to 198673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,495 DEBUG Processing 587/718 atomic regions from SNP 175865 to 176465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,618 DEBUG Processing 551/691 atomic regions from SNP 165207 to 165807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,689 DEBUG Processing 13/652 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,729 DEBUG Processing 662/735 atomic regions from SNP 198373 to 198973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,734 DEBUG Processing 588/718 atomic regions from SNP 176165 to 176765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,871 DEBUG Processing 552/691 atomic regions from SNP 165507 to 166107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,924 DEBUG Processing 14/652 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,975 DEBUG Processing 663/735 atomic regions from SNP 198673 to 199273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,979 DEBUG Processing 589/718 atomic regions from SNP 176465 to 177065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,129 DEBUG Processing 553/691 atomic regions from SNP 165807 to 166407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,161 DEBUG Processing 15/652 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,221 DEBUG Processing 590/718 atomic regions from SNP 176765 to 177365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,227 DEBUG Processing 664/735 atomic regions from SNP 198973 to 199573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,379 DEBUG Processing 554/691 atomic regions from SNP 166107 to 166707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,393 DEBUG Processing 16/652 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,470 DEBUG Processing 591/718 atomic regions from SNP 177065 to 177665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,477 DEBUG Processing 665/735 atomic regions from SNP 199273 to 199873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,623 DEBUG Processing 17/652 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,630 DEBUG Processing 555/691 atomic regions from SNP 166407 to 167007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,714 DEBUG Processing 592/718 atomic regions from SNP 177365 to 177965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,724 DEBUG Processing 666/735 atomic regions from SNP 199573 to 200173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,857 DEBUG Processing 18/652 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,885 DEBUG Processing 556/691 atomic regions from SNP 166707 to 167307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,964 DEBUG Processing 593/718 atomic regions from SNP 177665 to 178265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,979 DEBUG Processing 667/735 atomic regions from SNP 199873 to 200473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,093 DEBUG Processing 19/652 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,144 DEBUG Processing 557/691 atomic regions from SNP 167007 to 167607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,211 DEBUG Processing 594/718 atomic regions from SNP 177965 to 178565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,230 DEBUG Processing 668/735 atomic regions from SNP 200173 to 200773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,319 DEBUG Processing 20/652 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,403 DEBUG Processing 558/691 atomic regions from SNP 167307 to 167907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,460 DEBUG Processing 595/718 atomic regions from SNP 178265 to 178865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,480 DEBUG Processing 669/735 atomic regions from SNP 200473 to 201073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,546 DEBUG Processing 21/652 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,678 DEBUG Processing 559/691 atomic regions from SNP 167607 to 168207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,707 DEBUG Processing 596/718 atomic regions from SNP 178565 to 179165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,735 DEBUG Processing 670/735 atomic regions from SNP 200773 to 201373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,787 DEBUG Processing 22/652 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,940 DEBUG Processing 560/691 atomic regions from SNP 167907 to 168507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,957 DEBUG Processing 597/718 atomic regions from SNP 178865 to 179465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,997 DEBUG Processing 671/735 atomic regions from SNP 201073 to 201673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,028 DEBUG Processing 23/652 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,196 DEBUG Processing 561/691 atomic regions from SNP 168207 to 168807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,202 DEBUG Processing 598/718 atomic regions from SNP 179165 to 179765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,248 DEBUG Processing 672/735 atomic regions from SNP 201373 to 201973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,261 DEBUG Processing 24/652 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,441 DEBUG Processing 599/718 atomic regions from SNP 179465 to 180065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,448 DEBUG Processing 562/691 atomic regions from SNP 168507 to 169107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,497 DEBUG Processing 673/735 atomic regions from SNP 201673 to 202273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,504 DEBUG Processing 25/652 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,684 DEBUG Processing 600/718 atomic regions from SNP 179765 to 180365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,694 DEBUG Processing 563/691 atomic regions from SNP 168807 to 169407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,733 DEBUG Processing 26/652 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,743 DEBUG Processing 674/735 atomic regions from SNP 201973 to 202573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,950 DEBUG Processing 564/691 atomic regions from SNP 169107 to 169707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,958 DEBUG Processing 601/718 atomic regions from SNP 180065 to 180665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,982 DEBUG Processing 27/652 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,004 DEBUG Processing 675/735 atomic regions from SNP 202273 to 202873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,210 DEBUG Processing 602/718 atomic regions from SNP 180365 to 180965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,211 DEBUG Processing 565/691 atomic regions from SNP 169407 to 170007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,226 DEBUG Processing 28/652 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,267 DEBUG Processing 676/735 atomic regions from SNP 202573 to 203173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,459 DEBUG Processing 603/718 atomic regions from SNP 180665 to 181265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,467 DEBUG Processing 29/652 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,470 DEBUG Processing 566/691 atomic regions from SNP 169707 to 170307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,525 DEBUG Processing 677/735 atomic regions from SNP 202873 to 203473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,709 DEBUG Processing 30/652 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,710 DEBUG Processing 604/718 atomic regions from SNP 180965 to 181565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,730 DEBUG Processing 567/691 atomic regions from SNP 170007 to 170607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,779 DEBUG Processing 678/735 atomic regions from SNP 203173 to 203773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,955 DEBUG Processing 31/652 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,965 DEBUG Processing 605/718 atomic regions from SNP 181265 to 181865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,994 DEBUG Processing 568/691 atomic regions from SNP 170307 to 170907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,034 DEBUG Processing 679/735 atomic regions from SNP 203473 to 204073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,191 DEBUG Processing 32/652 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,212 DEBUG Processing 606/718 atomic regions from SNP 181565 to 182165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,245 DEBUG Processing 569/691 atomic regions from SNP 170607 to 171207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,286 DEBUG Processing 680/735 atomic regions from SNP 203773 to 204373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,430 DEBUG Processing 33/652 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,466 DEBUG Processing 607/718 atomic regions from SNP 181865 to 182465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,509 DEBUG Processing 570/691 atomic regions from SNP 170907 to 171507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,546 DEBUG Processing 681/735 atomic regions from SNP 204073 to 204673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,668 DEBUG Processing 34/652 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,732 DEBUG Processing 608/718 atomic regions from SNP 182165 to 182765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,780 DEBUG Processing 571/691 atomic regions from SNP 171207 to 171807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,798 DEBUG Processing 682/735 atomic regions from SNP 204373 to 204973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,905 DEBUG Processing 35/652 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,009 DEBUG Processing 609/718 atomic regions from SNP 182465 to 183065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,048 DEBUG Processing 572/691 atomic regions from SNP 171507 to 172107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,057 DEBUG Processing 683/735 atomic regions from SNP 204673 to 205273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,137 DEBUG Processing 36/652 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,272 DEBUG Processing 610/718 atomic regions from SNP 182765 to 183365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,309 DEBUG Processing 573/691 atomic regions from SNP 171807 to 172407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,314 DEBUG Processing 684/735 atomic regions from SNP 204973 to 205573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,377 DEBUG Processing 37/652 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,532 DEBUG Processing 611/718 atomic regions from SNP 183065 to 183665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,569 DEBUG Processing 685/735 atomic regions from SNP 205273 to 205873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,573 DEBUG Processing 574/691 atomic regions from SNP 172107 to 172707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,621 DEBUG Processing 38/652 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,792 DEBUG Processing 612/718 atomic regions from SNP 183365 to 183965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,820 DEBUG Processing 686/735 atomic regions from SNP 205573 to 206173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,837 DEBUG Processing 575/691 atomic regions from SNP 172407 to 173007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,865 DEBUG Processing 39/652 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,056 DEBUG Processing 613/718 atomic regions from SNP 183665 to 184265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,072 DEBUG Processing 687/735 atomic regions from SNP 205873 to 206473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,103 DEBUG Processing 40/652 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,124 DEBUG Processing 576/691 atomic regions from SNP 172707 to 173307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,315 DEBUG Processing 614/718 atomic regions from SNP 183965 to 184565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,325 DEBUG Processing 688/735 atomic regions from SNP 206173 to 206773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,345 DEBUG Processing 41/652 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,418 DEBUG Processing 577/691 atomic regions from SNP 173007 to 173607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,584 DEBUG Processing 689/735 atomic regions from SNP 206473 to 207073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,593 DEBUG Processing 42/652 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,608 DEBUG Processing 615/718 atomic regions from SNP 184265 to 184865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,706 DEBUG Processing 578/691 atomic regions from SNP 173307 to 173907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,837 DEBUG Processing 690/735 atomic regions from SNP 206773 to 207373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,837 DEBUG Processing 43/652 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,863 DEBUG Processing 616/718 atomic regions from SNP 184565 to 185165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,001 DEBUG Processing 579/691 atomic regions from SNP 173607 to 174207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,081 DEBUG Processing 44/652 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,099 DEBUG Processing 691/735 atomic regions from SNP 207073 to 207673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,115 DEBUG Processing 617/718 atomic regions from SNP 184865 to 185465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,299 DEBUG Processing 580/691 atomic regions from SNP 173907 to 174507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,326 DEBUG Processing 45/652 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,364 DEBUG Processing 618/718 atomic regions from SNP 185165 to 185765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,370 DEBUG Processing 692/735 atomic regions from SNP 207373 to 207973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,583 DEBUG Processing 46/652 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,600 DEBUG Processing 581/691 atomic regions from SNP 174207 to 174807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,623 DEBUG Processing 619/718 atomic regions from SNP 185465 to 186065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,652 DEBUG Processing 693/735 atomic regions from SNP 207673 to 208273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,829 DEBUG Processing 47/652 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,872 DEBUG Processing 620/718 atomic regions from SNP 185765 to 186365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,897 DEBUG Processing 582/691 atomic regions from SNP 174507 to 175107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,922 DEBUG Processing 694/735 atomic regions from SNP 207973 to 208573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,068 DEBUG Processing 48/652 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,118 DEBUG Processing 621/718 atomic regions from SNP 186065 to 186665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,175 DEBUG Processing 695/735 atomic regions from SNP 208273 to 208873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,190 DEBUG Processing 583/691 atomic regions from SNP 174807 to 175407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,301 DEBUG Processing 49/652 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,361 DEBUG Processing 622/718 atomic regions from SNP 186365 to 186965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,429 DEBUG Processing 696/735 atomic regions from SNP 208573 to 209173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,479 DEBUG Processing 584/691 atomic regions from SNP 175107 to 175707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,556 DEBUG Processing 50/652 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,607 DEBUG Processing 623/718 atomic regions from SNP 186665 to 187265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,681 DEBUG Processing 697/735 atomic regions from SNP 208873 to 209473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,782 DEBUG Processing 585/691 atomic regions from SNP 175407 to 176007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,797 DEBUG Processing 51/652 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,846 DEBUG Processing 624/718 atomic regions from SNP 186965 to 187565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,938 DEBUG Processing 698/735 atomic regions from SNP 209173 to 209773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,045 DEBUG Processing 52/652 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,063 DEBUG Subchromosome time: 277.1456035077572, subchromosome SNPs: 252328 2025-01-31 09:51:51,063 DEBUG Estimated BADs: [1.23, 0.62, 1.23, 0.41, 2.46, 0.62, 4.92, 1.23, 0.31, 1.23, 0.62, 2.46, 0.41, 2.46, 0.21, 0.62, 6.15, 1.23, 3.69, 1.23, 0.41, 4.92, 2.46, 11.08, 2.46, 1.23, 0.25, 1.23, 11.08, 1.23, 0.62, 2.46] SNP counts: [11808, 12402, 2612, 15280, 13813, 4111, 2218, 7749, 3921, 20020, 15274, 1910, 3650, 6552, 8383, 5872, 845, 3289, 11308, 18910, 18449, 1650, 18990, 1116, 6628, 4155, 2669, 2266, 302, 7057, 13656, 5463] SNP IDs counts: [11808, 12402, 2612, 15280, 13813, 4111, 2218, 7749, 3921, 20020, 15274, 1910, 3650, 6552, 8383, 5872, 845, 3289, 11308, 18910, 18449, 1650, 18990, 1116, 6628, 4155, 2669, 2266, 302, 7057, 13656, 5463] Critical gap: 670164bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 10.03Mbp, 17.63Mbp, 19.13Mbp, 28.40Mbp, 35.91Mbp, 38.23Mbp, 39.41Mbp, 44.00Mbp, 46.37Mbp, 57.69Mbp, 66.95Mbp, 68.09Mbp, 70.71Mbp, 74.32Mbp, 79.58Mbp, 83.00Mbp, 83.44Mbp, 85.23Mbp, 91.44Mbp, 101.75Mbp, 112.82Mbp, 113.68Mbp, 124.66Mbp, 125.26Mbp, 128.83Mbp, 131.52Mbp, 133.46Mbp, 134.79Mbp, 134.95Mbp, 138.83Mbp, 146.58Mbp, 149.74Mbp] 2025-01-31 09:51:51,063 DEBUG chr6 time: 277.1461593359709 s 2025-01-31 09:51:51,077 DEBUG Processing 586/691 atomic regions from SNP 175707 to 176307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,080 DEBUG Processing 625/718 atomic regions from SNP 187265 to 187865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,197 DEBUG Processing 699/735 atomic regions from SNP 209473 to 210073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,222 DEBUG chr6: Fitting background model for 32 segments 2025-01-31 09:51:51,285 DEBUG Processing 53/652 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,320 DEBUG Processing 626/718 atomic regions from SNP 187565 to 188165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,351 DEBUG Processing 587/691 atomic regions from SNP 176007 to 176607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,456 DEBUG Processing 700/735 atomic regions from SNP 209773 to 210373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,521 DEBUG Processing 54/652 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,569 DEBUG Processing 627/718 atomic regions from SNP 187865 to 188465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,619 DEBUG Processing 588/691 atomic regions from SNP 176307 to 176907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,721 DEBUG Processing 701/735 atomic regions from SNP 210073 to 210673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,764 DEBUG Processing 55/652 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,819 DEBUG Processing 628/718 atomic regions from SNP 188165 to 188765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,896 DEBUG Processing 589/691 atomic regions from SNP 176607 to 177207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,980 DEBUG Processing 702/735 atomic regions from SNP 210373 to 210973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,005 DEBUG Processing 56/652 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,067 DEBUG Processing 629/718 atomic regions from SNP 188465 to 189065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,175 DEBUG Processing 590/691 atomic regions from SNP 176907 to 177507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,243 DEBUG Processing 703/735 atomic regions from SNP 210673 to 211273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,256 DEBUG Processing 57/652 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,318 DEBUG Processing 630/718 atomic regions from SNP 188765 to 189365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,443 DEBUG Processing 591/691 atomic regions from SNP 177207 to 177807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,509 DEBUG Processing 704/735 atomic regions from SNP 210973 to 211573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,517 DEBUG Processing 58/652 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,582 DEBUG Processing 631/718 atomic regions from SNP 189065 to 189665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,694 DEBUG Processing 592/691 atomic regions from SNP 177507 to 178107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,773 DEBUG Processing 705/735 atomic regions from SNP 211273 to 211873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,785 DEBUG Processing 59/652 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,841 DEBUG Processing 632/718 atomic regions from SNP 189365 to 189965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,936 DEBUG Processing 593/691 atomic regions from SNP 177807 to 178407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,027 DEBUG Processing 60/652 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,031 DEBUG Processing 706/735 atomic regions from SNP 211573 to 212173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,089 DEBUG Processing 633/718 atomic regions from SNP 189665 to 190265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,184 DEBUG Processing 594/691 atomic regions from SNP 178107 to 178707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,273 DEBUG Processing 61/652 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,292 DEBUG Processing 707/735 atomic regions from SNP 211873 to 212473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,333 DEBUG Processing 634/718 atomic regions from SNP 189965 to 190565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,431 DEBUG Processing 595/691 atomic regions from SNP 178407 to 179007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,520 DEBUG Processing 62/652 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,554 DEBUG Processing 708/735 atomic regions from SNP 212173 to 212773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,596 DEBUG Processing 635/718 atomic regions from SNP 190265 to 190865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,691 DEBUG Processing 596/691 atomic regions from SNP 178707 to 179307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,817 DEBUG Processing 709/735 atomic regions from SNP 212473 to 213073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,829 DEBUG Processing 63/652 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,861 DEBUG Processing 636/718 atomic regions from SNP 190565 to 191165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,935 DEBUG Processing 597/691 atomic regions from SNP 179007 to 179607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,069 DEBUG Processing 710/735 atomic regions from SNP 212773 to 213373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,072 DEBUG Processing 64/652 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,120 DEBUG Processing 637/718 atomic regions from SNP 190865 to 191465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,180 DEBUG Processing 598/691 atomic regions from SNP 179307 to 179907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,309 DEBUG Processing 65/652 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,319 DEBUG Processing 711/735 atomic regions from SNP 213073 to 213673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,378 DEBUG Processing 638/718 atomic regions from SNP 191165 to 191765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,426 DEBUG Processing 599/691 atomic regions from SNP 179607 to 180207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,544 DEBUG Processing 66/652 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,570 DEBUG Processing 712/735 atomic regions from SNP 213373 to 213973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,636 DEBUG Processing 639/718 atomic regions from SNP 191465 to 192065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,680 DEBUG Processing 600/691 atomic regions from SNP 179907 to 180507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,779 DEBUG Processing 67/652 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,825 DEBUG Processing 713/735 atomic regions from SNP 213673 to 214273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,896 DEBUG Processing 640/718 atomic regions from SNP 191765 to 192365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,931 DEBUG Processing 601/691 atomic regions from SNP 180207 to 180807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,016 DEBUG Processing 68/652 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,084 DEBUG Processing 714/735 atomic regions from SNP 213973 to 214573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,159 DEBUG Processing 641/718 atomic regions from SNP 192065 to 192665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,185 DEBUG Processing 602/691 atomic regions from SNP 180507 to 181107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,256 DEBUG Processing 69/652 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,342 DEBUG Processing 715/735 atomic regions from SNP 214273 to 214873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,413 DEBUG Processing 642/718 atomic regions from SNP 192365 to 192965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,446 DEBUG Processing 603/691 atomic regions from SNP 180807 to 181407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,520 DEBUG Processing 70/652 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,628 DEBUG Processing 716/735 atomic regions from SNP 214573 to 215173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,687 DEBUG Processing 643/718 atomic regions from SNP 192665 to 193265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,722 DEBUG Processing 604/691 atomic regions from SNP 181107 to 181707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,786 DEBUG Processing 71/652 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,922 DEBUG Processing 717/735 atomic regions from SNP 214873 to 215473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,969 DEBUG Processing 644/718 atomic regions from SNP 192965 to 193565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,985 DEBUG Processing 605/691 atomic regions from SNP 181407 to 182007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,062 DEBUG Processing 72/652 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,203 DEBUG Processing 718/735 atomic regions from SNP 215173 to 215773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,244 DEBUG Processing 606/691 atomic regions from SNP 181707 to 182307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,245 DEBUG Processing 645/718 atomic regions from SNP 193265 to 193865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,329 DEBUG Processing 73/652 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,485 DEBUG Processing 719/735 atomic regions from SNP 215473 to 216073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,504 DEBUG Processing 607/691 atomic regions from SNP 182007 to 182607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,514 DEBUG Processing 646/718 atomic regions from SNP 193565 to 194165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,595 DEBUG Processing 74/652 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,755 DEBUG Processing 608/691 atomic regions from SNP 182307 to 182907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,761 DEBUG Processing 720/735 atomic regions from SNP 215773 to 216373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,766 DEBUG Processing 647/718 atomic regions from SNP 193865 to 194465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,857 DEBUG Processing 75/652 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,011 DEBUG Processing 609/691 atomic regions from SNP 182607 to 183207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,013 DEBUG Processing 648/718 atomic regions from SNP 194165 to 194765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,024 DEBUG Processing 721/735 atomic regions from SNP 216073 to 216673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,132 DEBUG Processing 76/652 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,260 DEBUG Processing 610/691 atomic regions from SNP 182907 to 183507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,261 DEBUG Processing 649/718 atomic regions from SNP 194465 to 195065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,281 DEBUG Processing 722/735 atomic regions from SNP 216373 to 216973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,394 DEBUG Processing 77/652 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,506 DEBUG Processing 650/718 atomic regions from SNP 194765 to 195365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,509 DEBUG Processing 611/691 atomic regions from SNP 183207 to 183807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,568 DEBUG Processing 723/735 atomic regions from SNP 216673 to 217273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,659 DEBUG Processing 78/652 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,752 DEBUG Processing 651/718 atomic regions from SNP 195065 to 195665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,755 DEBUG Processing 612/691 atomic regions from SNP 183507 to 184107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,852 DEBUG Processing 724/735 atomic regions from SNP 216973 to 217573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,918 DEBUG Processing 79/652 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,003 DEBUG Processing 652/718 atomic regions from SNP 195365 to 195965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,004 DEBUG Processing 613/691 atomic regions from SNP 183807 to 184407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,143 DEBUG Processing 725/735 atomic regions from SNP 217273 to 217873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,152 DEBUG Processing 80/652 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,247 DEBUG Processing 653/718 atomic regions from SNP 195665 to 196265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,249 DEBUG Processing 614/691 atomic regions from SNP 184107 to 184707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,411 DEBUG Processing 81/652 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,426 DEBUG Processing 726/735 atomic regions from SNP 217573 to 218173 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,507 DEBUG Processing 615/691 atomic regions from SNP 184407 to 185007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,516 DEBUG Processing 654/718 atomic regions from SNP 195965 to 196565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,670 DEBUG Processing 82/652 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,709 DEBUG Processing 727/735 atomic regions from SNP 217873 to 218473 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,769 DEBUG Processing 616/691 atomic regions from SNP 184707 to 185307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,772 DEBUG Processing 655/718 atomic regions from SNP 196265 to 196865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,934 DEBUG Processing 83/652 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,982 DEBUG Processing 728/735 atomic regions from SNP 218173 to 218773 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,032 DEBUG Processing 617/691 atomic regions from SNP 185007 to 185607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,033 DEBUG Processing 656/718 atomic regions from SNP 196565 to 197165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,194 DEBUG Processing 84/652 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,237 DEBUG Processing 729/735 atomic regions from SNP 218473 to 219073 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,299 DEBUG Processing 657/718 atomic regions from SNP 196865 to 197465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,314 DEBUG Processing 618/691 atomic regions from SNP 185307 to 185907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,437 DEBUG Processing 85/652 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,493 DEBUG Processing 730/735 atomic regions from SNP 218773 to 219373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,568 DEBUG Processing 658/718 atomic regions from SNP 197165 to 197765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,595 DEBUG Processing 619/691 atomic regions from SNP 185607 to 186207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,671 DEBUG Processing 86/652 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,743 DEBUG Processing 731/735 atomic regions from SNP 219073 to 219673 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,857 DEBUG Processing 659/718 atomic regions from SNP 197465 to 198065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,859 DEBUG Processing 620/691 atomic regions from SNP 185907 to 186507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,908 DEBUG Processing 87/652 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,991 DEBUG Processing 732/735 atomic regions from SNP 219373 to 219973 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,126 DEBUG Processing 621/691 atomic regions from SNP 186207 to 186807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,138 DEBUG Processing 88/652 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,146 DEBUG Processing 660/718 atomic regions from SNP 197765 to 198365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,245 DEBUG Processing 733/735 atomic regions from SNP 219673 to 220273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,367 DEBUG Processing 89/652 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,397 DEBUG Processing 622/691 atomic regions from SNP 186507 to 187107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,423 DEBUG Processing 661/718 atomic regions from SNP 198065 to 198665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,494 DEBUG Processing 734/735 atomic regions from SNP 219973 to 220573 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,592 DEBUG Processing 90/652 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,644 DEBUG Processing 623/691 atomic regions from SNP 186807 to 187407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,716 DEBUG Processing 662/718 atomic regions from SNP 198365 to 198965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,746 DEBUG Processing 735/735 atomic regions from SNP 220273 to 220873 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,814 DEBUG Processing 91/652 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,886 DEBUG Processing 624/691 atomic regions from SNP 187107 to 187707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,888 DEBUG Unique SNPs positions in subchromosome 1: 220874 2025-01-31 09:52:01,003 DEBUG Processing 663/718 atomic regions from SNP 198665 to 199265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,041 DEBUG Processing 92/652 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,134 DEBUG Processing 625/691 atomic regions from SNP 187407 to 188007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,264 DEBUG Processing 93/652 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,294 DEBUG Processing 664/718 atomic regions from SNP 198965 to 199565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,377 DEBUG Processing 626/691 atomic regions from SNP 187707 to 188307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,480 DEBUG Processing 94/652 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,579 DEBUG Processing 665/718 atomic regions from SNP 199265 to 199865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,617 DEBUG Processing 627/691 atomic regions from SNP 188007 to 188607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,701 DEBUG Processing 95/652 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,862 DEBUG Processing 628/691 atomic regions from SNP 188307 to 188907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,864 DEBUG Processing 666/718 atomic regions from SNP 199565 to 200165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,929 DEBUG Processing 96/652 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,109 DEBUG Processing 629/691 atomic regions from SNP 188607 to 189207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,149 DEBUG Processing 667/718 atomic regions from SNP 199865 to 200465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,157 DEBUG Processing 97/652 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,359 DEBUG Processing 630/691 atomic regions from SNP 188907 to 189507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,387 DEBUG Processing 98/652 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,418 DEBUG Processing 668/718 atomic regions from SNP 200165 to 200765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,603 DEBUG Processing 631/691 atomic regions from SNP 189207 to 189807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,616 DEBUG Processing 99/652 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,671 DEBUG Processing 669/718 atomic regions from SNP 200465 to 201065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,841 DEBUG Processing 100/652 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,843 DEBUG Processing 632/691 atomic regions from SNP 189507 to 190107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,924 DEBUG Processing 670/718 atomic regions from SNP 200765 to 201365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,065 DEBUG Processing 101/652 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,088 DEBUG Processing 633/691 atomic regions from SNP 189807 to 190407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,170 DEBUG Processing 671/718 atomic regions from SNP 201065 to 201665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,288 DEBUG Processing 102/652 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,338 DEBUG Processing 634/691 atomic regions from SNP 190107 to 190707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,427 DEBUG Processing 672/718 atomic regions from SNP 201365 to 201965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,514 DEBUG Processing 103/652 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,597 DEBUG Processing 635/691 atomic regions from SNP 190407 to 191007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,693 DEBUG Processing 673/718 atomic regions from SNP 201665 to 202265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,740 DEBUG Processing 104/652 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,837 DEBUG Processing 636/691 atomic regions from SNP 190707 to 191307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,963 DEBUG Processing 105/652 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,969 DEBUG Processing 674/718 atomic regions from SNP 201965 to 202565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,078 DEBUG Processing 637/691 atomic regions from SNP 191007 to 191607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,186 DEBUG Processing 106/652 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,248 DEBUG Processing 675/718 atomic regions from SNP 202265 to 202865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,326 DEBUG Processing 638/691 atomic regions from SNP 191307 to 191907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,405 DEBUG Processing 107/652 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,516 DEBUG Processing 676/718 atomic regions from SNP 202565 to 203165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,575 DEBUG Processing 639/691 atomic regions from SNP 191607 to 192207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,624 DEBUG Processing 108/652 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,799 DEBUG Processing 677/718 atomic regions from SNP 202865 to 203465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,826 DEBUG Processing 640/691 atomic regions from SNP 191907 to 192507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,857 DEBUG Processing 109/652 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,875 DEBUG Segmenting atomic regions: 2025-01-31 09:52:04,979 DEBUG Processing 1/715 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,075 DEBUG Processing 641/691 atomic regions from SNP 192207 to 192807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,087 DEBUG Processing 678/718 atomic regions from SNP 203165 to 203765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,109 DEBUG Processing 110/652 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,208 DEBUG Processing 2/715 atomic regions from SNP 301 to 901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,324 DEBUG Processing 642/691 atomic regions from SNP 192507 to 193107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,349 DEBUG Processing 111/652 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,379 DEBUG Processing 679/718 atomic regions from SNP 203465 to 204065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,440 DEBUG Processing 3/715 atomic regions from SNP 601 to 1201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,586 DEBUG Processing 112/652 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,589 DEBUG Processing 643/691 atomic regions from SNP 192807 to 193407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,672 DEBUG Processing 680/718 atomic regions from SNP 203765 to 204365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,675 DEBUG Processing 4/715 atomic regions from SNP 901 to 1501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,819 DEBUG Processing 113/652 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,842 DEBUG Processing 644/691 atomic regions from SNP 193107 to 193707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,909 DEBUG Processing 5/715 atomic regions from SNP 1201 to 1801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,953 DEBUG Processing 681/718 atomic regions from SNP 204065 to 204665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,047 DEBUG Processing 114/652 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,091 DEBUG Processing 645/691 atomic regions from SNP 193407 to 194007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,145 DEBUG Processing 6/715 atomic regions from SNP 1501 to 2101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,230 DEBUG Processing 682/718 atomic regions from SNP 204365 to 204965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,275 DEBUG Processing 115/652 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,346 DEBUG Processing 646/691 atomic regions from SNP 193707 to 194307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,386 DEBUG Processing 7/715 atomic regions from SNP 1801 to 2401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,499 DEBUG Processing 116/652 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,517 DEBUG Processing 683/718 atomic regions from SNP 204665 to 205265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,600 DEBUG Processing 647/691 atomic regions from SNP 194007 to 194607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,621 DEBUG Processing 8/715 atomic regions from SNP 2101 to 2701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,731 DEBUG Processing 117/652 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,797 DEBUG Processing 684/718 atomic regions from SNP 204965 to 205565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,855 DEBUG Processing 648/691 atomic regions from SNP 194307 to 194907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,863 DEBUG Processing 9/715 atomic regions from SNP 2401 to 3001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,953 DEBUG Processing 118/652 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,080 DEBUG Processing 685/718 atomic regions from SNP 205265 to 205865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,106 DEBUG Processing 10/715 atomic regions from SNP 2701 to 3301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,111 DEBUG Processing 649/691 atomic regions from SNP 194607 to 195207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,185 DEBUG Processing 119/652 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,349 DEBUG Processing 11/715 atomic regions from SNP 3001 to 3601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,365 DEBUG Processing 686/718 atomic regions from SNP 205565 to 206165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,367 DEBUG Processing 650/691 atomic regions from SNP 194907 to 195507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,420 DEBUG Processing 120/652 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,582 DEBUG Processing 12/715 atomic regions from SNP 3301 to 3901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,616 DEBUG Processing 651/691 atomic regions from SNP 195207 to 195807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,648 DEBUG Processing 687/718 atomic regions from SNP 205865 to 206465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,650 DEBUG Processing 121/652 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,809 DEBUG Processing 13/715 atomic regions from SNP 3601 to 4201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,863 DEBUG Processing 652/691 atomic regions from SNP 195507 to 196107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,882 DEBUG Processing 122/652 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,920 DEBUG Processing 688/718 atomic regions from SNP 206165 to 206765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,040 DEBUG Processing 14/715 atomic regions from SNP 3901 to 4501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,122 DEBUG Processing 653/691 atomic regions from SNP 195807 to 196407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,124 DEBUG Processing 123/652 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,193 DEBUG Processing 689/718 atomic regions from SNP 206465 to 207065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,268 DEBUG Processing 15/715 atomic regions from SNP 4201 to 4801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,356 DEBUG Processing 124/652 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,373 DEBUG Processing 654/691 atomic regions from SNP 196107 to 196707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,390 DEBUG Subchromosome time: 222.56351427733898, subchromosome SNPs: 220874 2025-01-31 09:52:08,390 DEBUG Estimated BADs: [0.42, 2.53, 0.63, 1.26, 0.32, 1.26, 0.63, 3.79, 1.26, 0.21, 0.63, 2.53, 0.18, 1.26, 0.63, 2.53, 12.63, 1.26, 11.37, 0.63, 2.53, 1.26, 0.32, 0.63, 1.26, 0.42, 7.58, 1.26] SNP counts: [1420, 3369, 11941, 3520, 3308, 26099, 14006, 6417, 6006, 4449, 13410, 10911, 2415, 10441, 6660, 7417, 3854, 16206, 241, 3273, 1428, 12264, 10197, 11098, 18618, 5452, 3549, 2905] SNP IDs counts: [1420, 3369, 11941, 3520, 3308, 26099, 14006, 6417, 6006, 4449, 13410, 10911, 2415, 10441, 6660, 7417, 3854, 16206, 241, 3273, 1428, 12264, 10197, 11098, 18618, 5452, 3549, 2905] Critical gap: 623110bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.95Mbp, 5.85Mbp, 12.91Mbp, 14.85Mbp, 16.90Mbp, 31.85Mbp, 40.10Mbp, 43.55Mbp, 46.91Mbp, 49.78Mbp, 58.31Mbp, 64.21Mbp, 65.80Mbp, 71.60Mbp, 75.48Mbp, 79.64Mbp, 81.65Mbp, 91.08Mbp, 91.21Mbp, 93.03Mbp, 93.80Mbp, 100.66Mbp, 107.02Mbp, 113.40Mbp, 123.76Mbp, 126.89Mbp, 128.76Mbp, 130.69Mbp] 2025-01-31 09:52:08,390 DEBUG chr10 time: 222.56413889303803 s 2025-01-31 09:52:08,461 DEBUG Processing 690/718 atomic regions from SNP 206765 to 207365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,503 DEBUG Processing 16/715 atomic regions from SNP 4501 to 5101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,534 DEBUG chr10: Fitting background model for 28 segments 2025-01-31 09:52:08,594 DEBUG Processing 125/652 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,631 DEBUG Processing 655/691 atomic regions from SNP 196407 to 197007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,732 DEBUG Processing 691/718 atomic regions from SNP 207065 to 207665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,753 DEBUG Processing 17/715 atomic regions from SNP 4801 to 5401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,828 DEBUG Processing 126/652 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,884 DEBUG Processing 656/691 atomic regions from SNP 196707 to 197307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,978 DEBUG Processing 692/718 atomic regions from SNP 207365 to 207965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,987 DEBUG Processing 18/715 atomic regions from SNP 5101 to 5701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,067 DEBUG Processing 127/652 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,142 DEBUG Processing 657/691 atomic regions from SNP 197007 to 197607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,230 DEBUG Processing 19/715 atomic regions from SNP 5401 to 6001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,263 DEBUG Processing 693/718 atomic regions from SNP 207665 to 208265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,307 DEBUG Processing 128/652 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,403 DEBUG Processing 658/691 atomic regions from SNP 197307 to 197907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,473 DEBUG Processing 20/715 atomic regions from SNP 5701 to 6301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,529 DEBUG Processing 694/718 atomic regions from SNP 207965 to 208565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,546 DEBUG Processing 129/652 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,657 DEBUG Processing 659/691 atomic regions from SNP 197607 to 198207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,714 DEBUG Processing 21/715 atomic regions from SNP 6001 to 6601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,784 DEBUG Processing 695/718 atomic regions from SNP 208265 to 208865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,802 DEBUG Processing 130/652 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,916 DEBUG Processing 660/691 atomic regions from SNP 197907 to 198507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,952 DEBUG Processing 22/715 atomic regions from SNP 6301 to 6901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,041 DEBUG Processing 696/718 atomic regions from SNP 208565 to 209165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,066 DEBUG Processing 131/652 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,189 DEBUG Processing 23/715 atomic regions from SNP 6601 to 7201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,192 DEBUG Processing 661/691 atomic regions from SNP 198207 to 198807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,307 DEBUG Processing 697/718 atomic regions from SNP 208865 to 209465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,317 DEBUG Processing 132/652 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,426 DEBUG Processing 24/715 atomic regions from SNP 6901 to 7501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,448 DEBUG Processing 662/691 atomic regions from SNP 198507 to 199107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,558 DEBUG Processing 133/652 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,565 DEBUG Processing 698/718 atomic regions from SNP 209165 to 209765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,661 DEBUG Processing 25/715 atomic regions from SNP 7201 to 7801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,691 DEBUG Processing 663/691 atomic regions from SNP 198807 to 199407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,812 DEBUG Processing 699/718 atomic regions from SNP 209465 to 210065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,815 DEBUG Processing 134/652 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,892 DEBUG Processing 26/715 atomic regions from SNP 7501 to 8101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,933 DEBUG Processing 664/691 atomic regions from SNP 199107 to 199707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,059 DEBUG Processing 700/718 atomic regions from SNP 209765 to 210365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,080 DEBUG Processing 135/652 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,138 DEBUG Processing 27/715 atomic regions from SNP 7801 to 8401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,192 DEBUG Processing 665/691 atomic regions from SNP 199407 to 200007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,316 DEBUG Processing 701/718 atomic regions from SNP 210065 to 210665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,322 DEBUG Processing 136/652 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,379 DEBUG Processing 28/715 atomic regions from SNP 8101 to 8701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,448 DEBUG Processing 666/691 atomic regions from SNP 199707 to 200307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,570 DEBUG Processing 702/718 atomic regions from SNP 210365 to 210965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,579 DEBUG Processing 137/652 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,614 DEBUG Processing 29/715 atomic regions from SNP 8401 to 9001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,717 DEBUG Processing 667/691 atomic regions from SNP 200007 to 200607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,837 DEBUG Processing 138/652 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,838 DEBUG Processing 703/718 atomic regions from SNP 210665 to 211265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,852 DEBUG Processing 30/715 atomic regions from SNP 8701 to 9301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,994 DEBUG Processing 668/691 atomic regions from SNP 200307 to 200907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,090 DEBUG Processing 31/715 atomic regions from SNP 9001 to 9601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,092 DEBUG Processing 139/652 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,115 DEBUG Processing 704/718 atomic regions from SNP 210965 to 211565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,269 DEBUG Processing 669/691 atomic regions from SNP 200607 to 201207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,328 DEBUG Processing 32/715 atomic regions from SNP 9301 to 9901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,346 DEBUG Processing 140/652 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,365 DEBUG Processing 705/718 atomic regions from SNP 211265 to 211865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,543 DEBUG Processing 670/691 atomic regions from SNP 200907 to 201507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,568 DEBUG Processing 33/715 atomic regions from SNP 9601 to 10201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,589 DEBUG Processing 141/652 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,640 DEBUG Processing 706/718 atomic regions from SNP 211565 to 212165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,803 DEBUG Processing 34/715 atomic regions from SNP 9901 to 10501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,809 DEBUG Processing 671/691 atomic regions from SNP 201207 to 201807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,831 DEBUG Processing 142/652 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,894 DEBUG Processing 707/718 atomic regions from SNP 211865 to 212465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,035 DEBUG Processing 35/715 atomic regions from SNP 10201 to 10801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,076 DEBUG Processing 672/691 atomic regions from SNP 201507 to 202107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,089 DEBUG Processing 143/652 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,148 DEBUG Processing 708/718 atomic regions from SNP 212165 to 212765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,263 DEBUG Processing 36/715 atomic regions from SNP 10501 to 11101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,358 DEBUG Processing 673/691 atomic regions from SNP 201807 to 202407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,362 DEBUG Processing 144/652 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,405 DEBUG Processing 709/718 atomic regions from SNP 212465 to 213065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,508 DEBUG Processing 37/715 atomic regions from SNP 10801 to 11401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,634 DEBUG Processing 145/652 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,635 DEBUG Processing 674/691 atomic regions from SNP 202107 to 202707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,657 DEBUG Processing 710/718 atomic regions from SNP 212765 to 213365 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,738 DEBUG Processing 38/715 atomic regions from SNP 11101 to 11701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,876 DEBUG Processing 146/652 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,909 DEBUG Processing 711/718 atomic regions from SNP 213065 to 213665 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,917 DEBUG Processing 675/691 atomic regions from SNP 202407 to 203007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,972 DEBUG Processing 39/715 atomic regions from SNP 11401 to 12001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,110 DEBUG Processing 147/652 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,159 DEBUG Processing 712/718 atomic regions from SNP 213365 to 213965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,185 DEBUG Processing 676/691 atomic regions from SNP 202707 to 203307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,206 DEBUG Processing 40/715 atomic regions from SNP 11701 to 12301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,346 DEBUG Processing 148/652 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,413 DEBUG Processing 713/718 atomic regions from SNP 213665 to 214265 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,438 DEBUG Processing 677/691 atomic regions from SNP 203007 to 203607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,444 DEBUG Processing 41/715 atomic regions from SNP 12001 to 12601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,578 DEBUG Processing 149/652 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,660 DEBUG Processing 714/718 atomic regions from SNP 213965 to 214565 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,682 DEBUG Processing 42/715 atomic regions from SNP 12301 to 12901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,690 DEBUG Processing 678/691 atomic regions from SNP 203307 to 203907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,804 DEBUG Processing 150/652 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,911 DEBUG Processing 715/718 atomic regions from SNP 214265 to 214865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,924 DEBUG Processing 43/715 atomic regions from SNP 12601 to 13201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,938 DEBUG Processing 679/691 atomic regions from SNP 203607 to 204207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,029 DEBUG Processing 151/652 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,158 DEBUG Processing 716/718 atomic regions from SNP 214565 to 215165 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,162 DEBUG Processing 44/715 atomic regions from SNP 12901 to 13501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,184 DEBUG Processing 680/691 atomic regions from SNP 203907 to 204507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,259 DEBUG Processing 152/652 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,405 DEBUG Processing 45/715 atomic regions from SNP 13201 to 13801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,414 DEBUG Processing 717/718 atomic regions from SNP 214865 to 215465 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,429 DEBUG Processing 681/691 atomic regions from SNP 204207 to 204807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,491 DEBUG Processing 153/652 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,646 DEBUG Processing 46/715 atomic regions from SNP 13501 to 14101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,665 DEBUG Processing 718/718 atomic regions from SNP 215165 to 215765 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,678 DEBUG Processing 682/691 atomic regions from SNP 204507 to 205107 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,726 DEBUG Processing 154/652 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,812 DEBUG Unique SNPs positions in subchromosome 1: 215766 2025-01-31 09:52:15,884 DEBUG Processing 47/715 atomic regions from SNP 13801 to 14401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,933 DEBUG Processing 683/691 atomic regions from SNP 204807 to 205407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,960 DEBUG Processing 155/652 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,117 DEBUG Processing 48/715 atomic regions from SNP 14101 to 14701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,192 DEBUG Processing 684/691 atomic regions from SNP 205107 to 205707 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,193 DEBUG Processing 156/652 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,351 DEBUG Processing 49/715 atomic regions from SNP 14401 to 15001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,424 DEBUG Processing 157/652 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,440 DEBUG Processing 685/691 atomic regions from SNP 205407 to 206007 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,581 DEBUG Processing 50/715 atomic regions from SNP 14701 to 15301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,653 DEBUG Processing 158/652 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,685 DEBUG Processing 686/691 atomic regions from SNP 205707 to 206307 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,813 DEBUG Processing 51/715 atomic regions from SNP 15001 to 15601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,905 DEBUG Processing 159/652 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,932 DEBUG Processing 687/691 atomic regions from SNP 206007 to 206607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,037 DEBUG Processing 52/715 atomic regions from SNP 15301 to 15901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,171 DEBUG Processing 160/652 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,183 DEBUG Processing 688/691 atomic regions from SNP 206307 to 206907 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,263 DEBUG Processing 53/715 atomic regions from SNP 15601 to 16201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,417 DEBUG Processing 161/652 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,436 DEBUG Processing 689/691 atomic regions from SNP 206607 to 207207 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,495 DEBUG Processing 54/715 atomic regions from SNP 15901 to 16501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,655 DEBUG Processing 162/652 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,685 DEBUG Processing 690/691 atomic regions from SNP 206907 to 207507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,738 DEBUG Processing 55/715 atomic regions from SNP 16201 to 16801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,881 DEBUG Processing 163/652 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,933 DEBUG Processing 691/691 atomic regions from SNP 207207 to 207807 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,974 DEBUG Processing 56/715 atomic regions from SNP 16501 to 17101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,075 DEBUG Unique SNPs positions in subchromosome 3: 207808 2025-01-31 09:52:18,103 DEBUG Processing 164/652 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,211 DEBUG Processing 57/715 atomic regions from SNP 16801 to 17401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,327 DEBUG Processing 165/652 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,445 DEBUG Processing 58/715 atomic regions from SNP 17101 to 17701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,554 DEBUG Processing 166/652 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,683 DEBUG Processing 59/715 atomic regions from SNP 17401 to 18001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,782 DEBUG Processing 167/652 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,922 DEBUG Processing 60/715 atomic regions from SNP 17701 to 18301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,013 DEBUG Processing 168/652 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,163 DEBUG Processing 61/715 atomic regions from SNP 18001 to 18601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,248 DEBUG Processing 169/652 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,408 DEBUG Processing 62/715 atomic regions from SNP 18301 to 18901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,485 DEBUG Processing 170/652 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,648 DEBUG Processing 63/715 atomic regions from SNP 18601 to 19201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,726 DEBUG Processing 171/652 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,882 DEBUG Processing 64/715 atomic regions from SNP 18901 to 19501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,959 DEBUG Processing 172/652 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,117 DEBUG Processing 65/715 atomic regions from SNP 19201 to 19801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,194 DEBUG Processing 173/652 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,365 DEBUG Processing 66/715 atomic regions from SNP 19501 to 20101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,437 DEBUG Processing 174/652 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,637 DEBUG Processing 67/715 atomic regions from SNP 19801 to 20401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,669 DEBUG Processing 175/652 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,884 DEBUG Processing 68/715 atomic regions from SNP 20101 to 20701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,912 DEBUG Processing 176/652 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,126 DEBUG Processing 69/715 atomic regions from SNP 20401 to 21001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,153 DEBUG Processing 177/652 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,375 DEBUG Processing 70/715 atomic regions from SNP 20701 to 21301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,402 DEBUG Processing 178/652 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,627 DEBUG Processing 71/715 atomic regions from SNP 21001 to 21601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,647 DEBUG Processing 179/652 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,874 DEBUG Processing 72/715 atomic regions from SNP 21301 to 21901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,875 DEBUG Processing 180/652 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,107 DEBUG Processing 181/652 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,121 DEBUG Processing 73/715 atomic regions from SNP 21601 to 22201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,329 DEBUG Processing 182/652 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,363 DEBUG Processing 74/715 atomic regions from SNP 21901 to 22501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,553 DEBUG Processing 183/652 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,598 DEBUG Processing 75/715 atomic regions from SNP 22201 to 22801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,778 DEBUG Processing 184/652 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,834 DEBUG Processing 76/715 atomic regions from SNP 22501 to 23101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,000 DEBUG Processing 185/652 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,072 DEBUG Processing 77/715 atomic regions from SNP 22801 to 23401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,227 DEBUG Processing 186/652 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,311 DEBUG Processing 78/715 atomic regions from SNP 23101 to 23701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,455 DEBUG Processing 187/652 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,545 DEBUG Processing 79/715 atomic regions from SNP 23401 to 24001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,685 DEBUG Processing 188/652 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,789 DEBUG Processing 80/715 atomic regions from SNP 23701 to 24301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,915 DEBUG Processing 189/652 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,055 DEBUG Processing 81/715 atomic regions from SNP 24001 to 24601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,177 DEBUG Processing 190/652 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,293 DEBUG Processing 82/715 atomic regions from SNP 24301 to 24901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,409 DEBUG Processing 191/652 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,532 DEBUG Processing 83/715 atomic regions from SNP 24601 to 25201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,641 DEBUG Processing 192/652 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,770 DEBUG Processing 84/715 atomic regions from SNP 24901 to 25501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,869 DEBUG Processing 193/652 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,010 DEBUG Processing 85/715 atomic regions from SNP 25201 to 25801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,095 DEBUG Processing 194/652 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,258 DEBUG Processing 86/715 atomic regions from SNP 25501 to 26101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,322 DEBUG Processing 195/652 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,520 DEBUG Processing 87/715 atomic regions from SNP 25801 to 26401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,575 DEBUG Processing 196/652 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,773 DEBUG Processing 88/715 atomic regions from SNP 26101 to 26701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,803 DEBUG Processing 197/652 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,024 DEBUG Processing 89/715 atomic regions from SNP 26401 to 27001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,026 DEBUG Processing 198/652 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,251 DEBUG Processing 199/652 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,274 DEBUG Processing 90/715 atomic regions from SNP 26701 to 27301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,476 DEBUG Processing 200/652 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,525 DEBUG Processing 91/715 atomic regions from SNP 27001 to 27601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,715 DEBUG Processing 201/652 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,776 DEBUG Processing 92/715 atomic regions from SNP 27301 to 27901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,941 DEBUG Processing 202/652 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,025 DEBUG Processing 93/715 atomic regions from SNP 27601 to 28201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,164 DEBUG Processing 203/652 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,271 DEBUG Processing 94/715 atomic regions from SNP 27901 to 28501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,398 DEBUG Processing 204/652 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,513 DEBUG Processing 95/715 atomic regions from SNP 28201 to 28801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,657 DEBUG Processing 205/652 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,756 DEBUG Processing 96/715 atomic regions from SNP 28501 to 29101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,893 DEBUG Processing 206/652 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,023 DEBUG Processing 97/715 atomic regions from SNP 28801 to 29401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,155 DEBUG Processing 207/652 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,295 DEBUG Processing 98/715 atomic regions from SNP 29101 to 29701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,383 DEBUG Processing 208/652 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,569 DEBUG Processing 99/715 atomic regions from SNP 29401 to 30001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,619 DEBUG Processing 209/652 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,847 DEBUG Processing 100/715 atomic regions from SNP 29701 to 30301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,861 DEBUG Processing 210/652 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,102 DEBUG Processing 211/652 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,126 DEBUG Processing 101/715 atomic regions from SNP 30001 to 30601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,340 DEBUG Processing 212/652 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,412 DEBUG Processing 102/715 atomic regions from SNP 30301 to 30901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,575 DEBUG Processing 213/652 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,702 DEBUG Processing 103/715 atomic regions from SNP 30601 to 31201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,819 DEBUG Processing 214/652 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,978 DEBUG Processing 104/715 atomic regions from SNP 30901 to 31501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,048 DEBUG Processing 215/652 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,264 DEBUG Processing 105/715 atomic regions from SNP 31201 to 31801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,291 DEBUG Processing 216/652 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,536 DEBUG Processing 217/652 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,551 DEBUG Processing 106/715 atomic regions from SNP 31501 to 32101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,792 DEBUG Processing 218/652 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,825 DEBUG Processing 107/715 atomic regions from SNP 31801 to 32401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,031 DEBUG Processing 219/652 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,096 DEBUG Processing 108/715 atomic regions from SNP 32101 to 32701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,262 DEBUG Processing 220/652 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,349 DEBUG Processing 109/715 atomic regions from SNP 32401 to 33001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,487 DEBUG Processing 221/652 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,590 DEBUG Processing 110/715 atomic regions from SNP 32701 to 33301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,705 DEBUG Processing 222/652 atomic regions from SNP 66521 to 67122 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,831 DEBUG Processing 111/715 atomic regions from SNP 33001 to 33601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,931 DEBUG Processing 223/652 atomic regions from SNP 66822 to 67423 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,077 DEBUG Processing 112/715 atomic regions from SNP 33301 to 33901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,198 DEBUG Processing 224/652 atomic regions from SNP 67123 to 67724 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,323 DEBUG Processing 113/715 atomic regions from SNP 33601 to 34201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,414 DEBUG Processing 225/652 atomic regions from SNP 67424 to 68025 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,568 DEBUG Processing 114/715 atomic regions from SNP 33901 to 34501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,639 DEBUG Processing 226/652 atomic regions from SNP 67725 to 68326 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,830 DEBUG Processing 115/715 atomic regions from SNP 34201 to 34801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,882 DEBUG Processing 227/652 atomic regions from SNP 68026 to 68627 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,072 DEBUG Processing 116/715 atomic regions from SNP 34501 to 35101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,123 DEBUG Processing 228/652 atomic regions from SNP 68327 to 68928 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,334 DEBUG Processing 117/715 atomic regions from SNP 34801 to 35401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,363 DEBUG Processing 229/652 atomic regions from SNP 68628 to 69229 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,587 DEBUG Processing 118/715 atomic regions from SNP 35101 to 35701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,592 DEBUG Processing 230/652 atomic regions from SNP 68929 to 69530 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,822 DEBUG Processing 231/652 atomic regions from SNP 69230 to 69831 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,824 DEBUG Processing 119/715 atomic regions from SNP 35401 to 36001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,892 DEBUG Subchromosome time: 222.18859385699034, subchromosome SNPs: 207808 2025-01-31 09:52:33,893 DEBUG Estimated BADs: [0.72, 5.76, 0.36, 2.88, 0.29, 1.44, 10.09, 0.36, 5.76, 0.48, 8.65, 0.72, 0.00, 0.48, 5.76, 0.72, 5.76, 0.29, 2.88, 0.48, 2.88, 0.48, 4.32, 11.53, 2.88, 0.29, 1.44, 0.36, 1.44, 0.29, 1.44, 0.72, 1.44, 0.36, 1.44, 4.32, 1.44, 0.21, 1.44, 0.24, 1.44, 0.21, 1.44, 2.88, 0.72, 2.88, 1.44, 7.21, 1.44, 8.65, 2.88] SNP counts: [799, 2335, 866, 2492, 2985, 837, 270, 3144, 2242, 2352, 1519, 447, 26, 1385, 3049, 1831, 7076, 2077, 3648, 2999, 1522, 7500, 1620, 1703, 2746, 1751, 2907, 8832, 1916, 10752, 9299, 7902, 4670, 2996, 2346, 3073, 7184, 5735, 3572, 2697, 1785, 4219, 4054, 9452, 8843, 3465, 28074, 3725, 23036, 1265, 7102] SNP IDs counts: [799, 2335, 866, 2492, 2985, 837, 270, 3144, 2242, 2352, 1519, 447, 26, 1385, 3049, 1831, 7076, 2077, 3648, 2999, 1522, 7500, 1620, 1703, 2746, 1751, 2907, 8832, 1916, 10752, 9299, 7902, 4670, 2996, 2346, 3073, 7184, 5735, 3572, 2697, 1785, 4219, 4054, 9452, 8843, 3465, 28074, 3725, 23036, 1265, 7102] Critical gap: 674022bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.57Mbp, 5.11Mbp, 5.74Mbp, 7.30Mbp, 12.34Mbp, 12.92Mbp, 13.06Mbp, 15.91Mbp, 17.09Mbp, 19.00Mbp, 19.80Mbp, 20.10Mbp[0.68Mbp], 21.29Mbp[1.50Mbp], 24.25Mbp, 25.92Mbp, 27.17Mbp, 31.04Mbp, 33.85Mbp, 35.84Mbp, 37.47Mbp, 38.28Mbp, 43.92Mbp, 44.81Mbp, 45.71Mbp, 47.16Mbp, 48.33Mbp, 49.96Mbp, 55.49Mbp, 56.63Mbp, 63.89Mbp, 69.01Mbp, 73.52Mbp, 76.21Mbp, 77.97Mbp, 79.24Mbp, 80.85Mbp, 84.83Mbp, 88.50Mbp, 90.54Mbp, 92.14Mbp, 93.18Mbp, 95.81Mbp, 98.05Mbp, 103.09Mbp, 109.08Mbp, 110.92Mbp, 126.25Mbp, 128.24Mbp, 140.82Mbp, 141.49Mbp, 145.44Mbp] 2025-01-31 09:52:33,893 DEBUG chr7 time: 222.18938265740871 s 2025-01-31 09:52:34,053 DEBUG Processing 232/652 atomic regions from SNP 69531 to 70132 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,059 DEBUG chr7: Fitting background model for 50 segments 2025-01-31 09:52:34,062 DEBUG Processing 120/715 atomic regions from SNP 35701 to 36301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,285 DEBUG Processing 233/652 atomic regions from SNP 69832 to 70433 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,300 DEBUG Processing 121/715 atomic regions from SNP 36001 to 36601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,517 DEBUG Processing 234/652 atomic regions from SNP 70133 to 70734 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,541 DEBUG Processing 122/715 atomic regions from SNP 36301 to 36901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,651 DEBUG Subchromosome time: 230.94971530511975, subchromosome SNPs: 215766 2025-01-31 09:52:34,652 DEBUG Estimated BADs: [2.99, 0.37, 2.99, 0.30, 1.49, 2.99, 0.50, 1.49, 0.37, 1.49, 0.30, 0.75, 0.30, 1.49, 0.21, 0.75, 1.49, 8.97, 4.48, 1.49, 4.48, 13.45, 1.49, 4.48, 0.25, 0.75, 4.48, 1.49, 2.99, 0.75, 2.99, 8.97, 4.48, 1.49] SNP counts: [2835, 7778, 10549, 3897, 10811, 3869, 9736, 5593, 11360, 9333, 8095, 6300, 4549, 3546, 2101, 6208, 3098, 3006, 1800, 18643, 2122, 1033, 16516, 3984, 10791, 3016, 5171, 6226, 3607, 7114, 4639, 8944, 5246, 4250] SNP IDs counts: [2835, 7778, 10549, 3897, 10811, 3869, 9736, 5593, 11360, 9333, 8095, 6300, 4549, 3546, 2101, 6208, 3098, 3006, 1800, 18643, 2122, 1033, 16516, 3984, 10791, 3016, 5171, 6226, 3607, 7114, 4639, 8944, 5246, 4250] Critical gap: 624169bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.78Mbp, 9.72Mbp, 15.36Mbp, 17.74Mbp, 25.59Mbp, 27.73Mbp, 33.59Mbp, 36.63Mbp, 43.66Mbp, 48.85Mbp, 53.87Mbp, 57.96Mbp, 60.86Mbp, 62.84Mbp, 64.17Mbp, 67.89Mbp, 69.79Mbp, 71.49Mbp, 72.54Mbp, 83.40Mbp, 84.57Mbp, 85.10Mbp, 94.16Mbp, 96.32Mbp, 102.86Mbp, 104.53Mbp, 107.38Mbp, 110.71Mbp, 112.63Mbp, 116.87Mbp, 119.34Mbp, 124.12Mbp, 126.90Mbp, 129.40Mbp] 2025-01-31 09:52:34,652 DEBUG chr8 time: 230.95043295621872 s 2025-01-31 09:52:34,765 DEBUG Processing 235/652 atomic regions from SNP 70434 to 71035 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,801 DEBUG Processing 123/715 atomic regions from SNP 36601 to 37201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,825 DEBUG chr8: Fitting background model for 34 segments 2025-01-31 09:52:35,000 DEBUG Processing 236/652 atomic regions from SNP 70735 to 71336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,055 DEBUG Processing 124/715 atomic regions from SNP 36901 to 37501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,265 DEBUG Processing 237/652 atomic regions from SNP 71036 to 71636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,311 DEBUG Processing 125/715 atomic regions from SNP 37201 to 37801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,321 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:52:35,538 DEBUG Processing 238/652 atomic regions from SNP 71336 to 71936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,565 DEBUG Processing 126/715 atomic regions from SNP 37501 to 38101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,802 DEBUG Processing 239/652 atomic regions from SNP 71636 to 72236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,813 DEBUG Processing 127/715 atomic regions from SNP 37801 to 38401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,036 DEBUG Processing 240/652 atomic regions from SNP 71936 to 72536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,057 DEBUG Processing 128/715 atomic regions from SNP 38101 to 38701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,271 DEBUG Processing 241/652 atomic regions from SNP 72236 to 72836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,296 DEBUG Processing 129/715 atomic regions from SNP 38401 to 39001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,506 DEBUG Processing 242/652 atomic regions from SNP 72536 to 73136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,532 DEBUG Processing 130/715 atomic regions from SNP 38701 to 39301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,754 DEBUG Processing 243/652 atomic regions from SNP 72836 to 73436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,770 DEBUG Processing 131/715 atomic regions from SNP 39001 to 39601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,004 DEBUG Processing 132/715 atomic regions from SNP 39301 to 39901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,021 DEBUG Processing 244/652 atomic regions from SNP 73136 to 73736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,242 DEBUG Processing 133/715 atomic regions from SNP 39601 to 40201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,290 DEBUG Processing 245/652 atomic regions from SNP 73436 to 74036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,489 DEBUG Processing 134/715 atomic regions from SNP 39901 to 40501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,549 DEBUG Processing 246/652 atomic regions from SNP 73736 to 74336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,733 DEBUG Processing 135/715 atomic regions from SNP 40201 to 40801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,787 DEBUG Processing 247/652 atomic regions from SNP 74036 to 74636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,987 DEBUG Processing 136/715 atomic regions from SNP 40501 to 41101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,022 DEBUG Processing 248/652 atomic regions from SNP 74336 to 74936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,232 DEBUG Processing 137/715 atomic regions from SNP 40801 to 41401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,257 DEBUG Processing 249/652 atomic regions from SNP 74636 to 75236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,491 DEBUG Processing 138/715 atomic regions from SNP 41101 to 41701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,500 DEBUG Processing 250/652 atomic regions from SNP 74936 to 75536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,735 DEBUG Processing 251/652 atomic regions from SNP 75236 to 75836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,742 DEBUG Processing 139/715 atomic regions from SNP 41401 to 42001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,980 DEBUG Processing 252/652 atomic regions from SNP 75536 to 76136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,990 DEBUG Processing 140/715 atomic regions from SNP 41701 to 42301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,242 DEBUG Processing 141/715 atomic regions from SNP 42001 to 42601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,248 DEBUG Processing 253/652 atomic regions from SNP 75836 to 76436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,499 DEBUG Processing 142/715 atomic regions from SNP 42301 to 42901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,518 DEBUG Processing 254/652 atomic regions from SNP 76136 to 76736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,758 DEBUG Processing 143/715 atomic regions from SNP 42601 to 43201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,791 DEBUG Processing 255/652 atomic regions from SNP 76436 to 77036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,010 DEBUG Processing 144/715 atomic regions from SNP 42901 to 43501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,056 DEBUG Processing 256/652 atomic regions from SNP 76736 to 77336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,260 DEBUG Processing 145/715 atomic regions from SNP 43201 to 43801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,322 DEBUG Processing 257/652 atomic regions from SNP 77036 to 77636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,511 DEBUG Processing 146/715 atomic regions from SNP 43501 to 44101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,590 DEBUG Processing 258/652 atomic regions from SNP 77336 to 77936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,759 DEBUG Processing 147/715 atomic regions from SNP 43801 to 44401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,830 DEBUG Processing 259/652 atomic regions from SNP 77636 to 78236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,006 DEBUG Processing 148/715 atomic regions from SNP 44101 to 44701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,089 DEBUG Processing 260/652 atomic regions from SNP 77936 to 78536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,252 DEBUG Processing 149/715 atomic regions from SNP 44401 to 45001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,363 DEBUG Processing 261/652 atomic regions from SNP 78236 to 78836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,493 DEBUG Processing 150/715 atomic regions from SNP 44701 to 45301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,635 DEBUG Processing 262/652 atomic regions from SNP 78536 to 79136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,743 DEBUG Processing 151/715 atomic regions from SNP 45001 to 45601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,883 DEBUG Processing 263/652 atomic regions from SNP 78836 to 79436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,988 DEBUG Processing 152/715 atomic regions from SNP 45301 to 45901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,121 DEBUG Processing 264/652 atomic regions from SNP 79136 to 79736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,229 DEBUG Processing 153/715 atomic regions from SNP 45601 to 46201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,356 DEBUG Processing 265/652 atomic regions from SNP 79436 to 80036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,474 DEBUG Processing 154/715 atomic regions from SNP 45901 to 46501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,589 DEBUG Processing 266/652 atomic regions from SNP 79736 to 80336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,722 DEBUG Processing 155/715 atomic regions from SNP 46201 to 46801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,844 DEBUG Processing 267/652 atomic regions from SNP 80036 to 80636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,970 DEBUG Processing 156/715 atomic regions from SNP 46501 to 47101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,094 DEBUG Processing 268/652 atomic regions from SNP 80336 to 80936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,217 DEBUG Processing 157/715 atomic regions from SNP 46801 to 47401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,341 DEBUG Processing 269/652 atomic regions from SNP 80636 to 81236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,465 DEBUG Processing 158/715 atomic regions from SNP 47101 to 47701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,573 DEBUG Processing 270/652 atomic regions from SNP 80936 to 81536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,727 DEBUG Processing 159/715 atomic regions from SNP 47401 to 48001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,805 DEBUG Processing 271/652 atomic regions from SNP 81236 to 81836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,991 DEBUG Processing 160/715 atomic regions from SNP 47701 to 48301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,035 DEBUG Processing 272/652 atomic regions from SNP 81536 to 82136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,254 DEBUG Processing 161/715 atomic regions from SNP 48001 to 48601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,276 DEBUG Processing 273/652 atomic regions from SNP 81836 to 82436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,494 DEBUG Processing 162/715 atomic regions from SNP 48301 to 48901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,521 DEBUG Processing 274/652 atomic regions from SNP 82136 to 82736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,737 DEBUG Processing 163/715 atomic regions from SNP 48601 to 49201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,769 DEBUG Processing 275/652 atomic regions from SNP 82436 to 83036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,977 DEBUG Processing 164/715 atomic regions from SNP 48901 to 49501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,006 DEBUG Processing 276/652 atomic regions from SNP 82736 to 83336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,226 DEBUG Processing 165/715 atomic regions from SNP 49201 to 49801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,241 DEBUG Processing 277/652 atomic regions from SNP 83036 to 83636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,473 DEBUG Processing 166/715 atomic regions from SNP 49501 to 50101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,475 DEBUG Processing 278/652 atomic regions from SNP 83336 to 83936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,705 DEBUG Processing 279/652 atomic regions from SNP 83636 to 84236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,732 DEBUG Processing 167/715 atomic regions from SNP 49801 to 50401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,937 DEBUG Processing 280/652 atomic regions from SNP 83936 to 84536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,979 DEBUG Processing 168/715 atomic regions from SNP 50101 to 50701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,173 DEBUG Processing 281/652 atomic regions from SNP 84236 to 84836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,227 DEBUG Processing 169/715 atomic regions from SNP 50401 to 51001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,411 DEBUG Processing 282/652 atomic regions from SNP 84536 to 85136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,479 DEBUG Processing 170/715 atomic regions from SNP 50701 to 51301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,648 DEBUG Processing 283/652 atomic regions from SNP 84836 to 85436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,736 DEBUG Processing 171/715 atomic regions from SNP 51001 to 51601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,881 DEBUG Processing 284/652 atomic regions from SNP 85136 to 85736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,985 DEBUG Processing 172/715 atomic regions from SNP 51301 to 51901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,115 DEBUG Processing 285/652 atomic regions from SNP 85436 to 86036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,235 DEBUG Processing 173/715 atomic regions from SNP 51601 to 52201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,353 DEBUG Processing 286/652 atomic regions from SNP 85736 to 86336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,478 DEBUG Processing 174/715 atomic regions from SNP 51901 to 52501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,589 DEBUG Processing 287/652 atomic regions from SNP 86036 to 86636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,729 DEBUG Processing 175/715 atomic regions from SNP 52201 to 52801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,823 DEBUG Processing 288/652 atomic regions from SNP 86336 to 86936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,980 DEBUG Processing 176/715 atomic regions from SNP 52501 to 53101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,057 DEBUG Processing 289/652 atomic regions from SNP 86636 to 87236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,231 DEBUG Processing 177/715 atomic regions from SNP 52801 to 53401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,287 DEBUG Processing 290/652 atomic regions from SNP 86936 to 87536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,477 DEBUG Processing 178/715 atomic regions from SNP 53101 to 53701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,517 DEBUG Processing 291/652 atomic regions from SNP 87236 to 87836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,728 DEBUG Processing 179/715 atomic regions from SNP 53401 to 54001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,754 DEBUG Processing 292/652 atomic regions from SNP 87536 to 88136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,983 DEBUG Processing 180/715 atomic regions from SNP 53701 to 54301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,992 DEBUG Processing 293/652 atomic regions from SNP 87836 to 88436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,227 DEBUG Processing 294/652 atomic regions from SNP 88136 to 88736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,240 DEBUG Processing 181/715 atomic regions from SNP 54001 to 54601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,470 DEBUG Processing 295/652 atomic regions from SNP 88436 to 89036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,503 DEBUG Processing 182/715 atomic regions from SNP 54301 to 54901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,713 DEBUG Processing 296/652 atomic regions from SNP 88736 to 89336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,756 DEBUG Processing 183/715 atomic regions from SNP 54601 to 55201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,954 DEBUG Processing 297/652 atomic regions from SNP 89036 to 89636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,019 DEBUG Processing 184/715 atomic regions from SNP 54901 to 55501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,201 DEBUG Processing 298/652 atomic regions from SNP 89336 to 89936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,257 DEBUG Processing 185/715 atomic regions from SNP 55201 to 55801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,423 DEBUG Processing 299/652 atomic regions from SNP 89636 to 90236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,500 DEBUG Processing 186/715 atomic regions from SNP 55501 to 56101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,653 DEBUG Processing 300/652 atomic regions from SNP 89936 to 90536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,747 DEBUG Processing 187/715 atomic regions from SNP 55801 to 56401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,883 DEBUG Processing 301/652 atomic regions from SNP 90236 to 90836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,002 DEBUG Processing 188/715 atomic regions from SNP 56101 to 56701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,123 DEBUG Processing 302/652 atomic regions from SNP 90536 to 91136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,251 DEBUG Processing 189/715 atomic regions from SNP 56401 to 57001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,356 DEBUG Processing 303/652 atomic regions from SNP 90836 to 91436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,494 DEBUG Processing 190/715 atomic regions from SNP 56701 to 57301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,605 DEBUG Processing 304/652 atomic regions from SNP 91136 to 91736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,735 DEBUG Processing 191/715 atomic regions from SNP 57001 to 57601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,855 DEBUG Processing 305/652 atomic regions from SNP 91436 to 92036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,974 DEBUG Processing 192/715 atomic regions from SNP 57301 to 57901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,096 DEBUG Processing 306/652 atomic regions from SNP 91736 to 92336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,212 DEBUG Processing 193/715 atomic regions from SNP 57601 to 58201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,344 DEBUG Processing 307/652 atomic regions from SNP 92036 to 92636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,452 DEBUG Processing 194/715 atomic regions from SNP 57901 to 58501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,582 DEBUG Processing 308/652 atomic regions from SNP 92336 to 92936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,696 DEBUG Processing 195/715 atomic regions from SNP 58201 to 58801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,814 DEBUG Processing 309/652 atomic regions from SNP 92636 to 93236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,945 DEBUG Processing 196/715 atomic regions from SNP 58501 to 59101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,049 DEBUG Processing 310/652 atomic regions from SNP 92936 to 93536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,194 DEBUG Processing 197/715 atomic regions from SNP 58801 to 59401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,277 DEBUG Processing 311/652 atomic regions from SNP 93236 to 93836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,437 DEBUG Processing 198/715 atomic regions from SNP 59101 to 59701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,444 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:52:53,508 DEBUG Processing 312/652 atomic regions from SNP 93536 to 94136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,692 DEBUG Processing 199/715 atomic regions from SNP 59401 to 60001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,747 DEBUG Processing 313/652 atomic regions from SNP 93836 to 94436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,942 DEBUG Processing 200/715 atomic regions from SNP 59701 to 60301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,984 DEBUG Processing 314/652 atomic regions from SNP 94136 to 94736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,192 DEBUG Processing 201/715 atomic regions from SNP 60001 to 60601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,217 DEBUG Processing 315/652 atomic regions from SNP 94436 to 95036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,436 DEBUG Processing 202/715 atomic regions from SNP 60301 to 60901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,451 DEBUG Processing 316/652 atomic regions from SNP 94736 to 95336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,683 DEBUG Processing 203/715 atomic regions from SNP 60601 to 61201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,685 DEBUG Processing 317/652 atomic regions from SNP 95036 to 95636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,912 DEBUG Processing 318/652 atomic regions from SNP 95336 to 95936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,924 DEBUG Processing 204/715 atomic regions from SNP 60901 to 61501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,160 DEBUG Processing 319/652 atomic regions from SNP 95636 to 96236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,160 DEBUG Processing 205/715 atomic regions from SNP 61201 to 61801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,390 DEBUG Processing 206/715 atomic regions from SNP 61501 to 62101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,413 DEBUG Processing 320/652 atomic regions from SNP 95936 to 96536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,623 DEBUG Processing 207/715 atomic regions from SNP 61801 to 62401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,666 DEBUG Processing 321/652 atomic regions from SNP 96236 to 96836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,863 DEBUG Processing 208/715 atomic regions from SNP 62101 to 62701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,898 DEBUG Processing 322/652 atomic regions from SNP 96536 to 97136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,107 DEBUG Processing 209/715 atomic regions from SNP 62401 to 63001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,142 DEBUG Processing 323/652 atomic regions from SNP 96836 to 97436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,350 DEBUG Processing 210/715 atomic regions from SNP 62701 to 63301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,397 DEBUG Processing 324/652 atomic regions from SNP 97136 to 97736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,590 DEBUG Processing 211/715 atomic regions from SNP 63001 to 63601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,636 DEBUG Processing 325/652 atomic regions from SNP 97436 to 98036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,832 DEBUG Processing 212/715 atomic regions from SNP 63301 to 63901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,876 DEBUG Processing 326/652 atomic regions from SNP 97736 to 98336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,074 DEBUG Processing 213/715 atomic regions from SNP 63601 to 64201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,114 DEBUG Processing 327/652 atomic regions from SNP 98036 to 98636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,312 DEBUG Processing 214/715 atomic regions from SNP 63901 to 64501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,353 DEBUG Processing 328/652 atomic regions from SNP 98336 to 98936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,586 DEBUG Processing 329/652 atomic regions from SNP 98636 to 99236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,588 DEBUG Processing 215/715 atomic regions from SNP 64201 to 64801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,815 DEBUG Processing 330/652 atomic regions from SNP 98936 to 99536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,847 DEBUG Processing 216/715 atomic regions from SNP 64501 to 65101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,894 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:52:57,896 DEBUG chr11: Signal quantile: 0.982. signal threshold: 11. Best RMSEA: 0.009 2025-01-31 09:52:58,063 DEBUG Processing 331/652 atomic regions from SNP 99236 to 99836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,100 DEBUG Processing 217/715 atomic regions from SNP 64801 to 65401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,290 DEBUG Processing 332/652 atomic regions from SNP 99536 to 100136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,351 DEBUG Processing 218/715 atomic regions from SNP 65101 to 65701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,511 DEBUG Processing 333/652 atomic regions from SNP 99836 to 100436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,593 DEBUG Processing 219/715 atomic regions from SNP 65401 to 66001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,731 DEBUG Processing 334/652 atomic regions from SNP 100136 to 100736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,829 DEBUG Processing 220/715 atomic regions from SNP 65701 to 66301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,966 DEBUG Processing 335/652 atomic regions from SNP 100436 to 101036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,103 DEBUG Processing 221/715 atomic regions from SNP 66001 to 66601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,210 DEBUG Processing 336/652 atomic regions from SNP 100736 to 101336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,391 DEBUG Processing 222/715 atomic regions from SNP 66301 to 66901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,465 DEBUG Processing 337/652 atomic regions from SNP 101036 to 101636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,640 DEBUG Processing 223/715 atomic regions from SNP 66601 to 67201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,709 DEBUG Processing 338/652 atomic regions from SNP 101336 to 101936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,887 DEBUG Processing 224/715 atomic regions from SNP 66901 to 67501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,950 DEBUG Processing 339/652 atomic regions from SNP 101636 to 102236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,134 DEBUG Processing 225/715 atomic regions from SNP 67201 to 67801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,186 DEBUG Processing 340/652 atomic regions from SNP 101936 to 102536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,384 DEBUG chr11 total SNP count: 209111 2025-01-31 09:53:00,384 DEBUG chr11 length: 122082543 2025-01-31 09:53:00,384 DEBUG ----------------------------------------- 2025-01-31 09:53:00,384 INFO Processing SNPs in chr11 2025-01-31 09:53:00,395 DEBUG Processing 226/715 atomic regions from SNP 67501 to 68101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,425 DEBUG Processing 341/652 atomic regions from SNP 102236 to 102836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,620 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 209111)] 2025-01-31 09:53:00,646 DEBUG Processing 227/715 atomic regions from SNP 67801 to 68401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,663 DEBUG Processing 342/652 atomic regions from SNP 102536 to 103136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,775 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:00,889 DEBUG Processing 228/715 atomic regions from SNP 68101 to 68701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,904 DEBUG Processing 343/652 atomic regions from SNP 102836 to 103436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,141 DEBUG Processing 229/715 atomic regions from SNP 68401 to 69001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,142 DEBUG Processing 344/652 atomic regions from SNP 103136 to 103736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,394 DEBUG Processing 345/652 atomic regions from SNP 103436 to 104036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,413 DEBUG Processing 230/715 atomic regions from SNP 68701 to 69301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,637 DEBUG Processing 346/652 atomic regions from SNP 103736 to 104336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,690 DEBUG Processing 231/715 atomic regions from SNP 69001 to 69601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,881 DEBUG Processing 347/652 atomic regions from SNP 104036 to 104636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,931 DEBUG Processing 232/715 atomic regions from SNP 69301 to 69901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,123 DEBUG Processing 348/652 atomic regions from SNP 104336 to 104936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,170 DEBUG Processing 233/715 atomic regions from SNP 69601 to 70201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,361 DEBUG Processing 349/652 atomic regions from SNP 104636 to 105236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,415 DEBUG Processing 234/715 atomic regions from SNP 69901 to 70501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,612 DEBUG Processing 350/652 atomic regions from SNP 104936 to 105536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,673 DEBUG Processing 235/715 atomic regions from SNP 70201 to 70801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,864 DEBUG Processing 351/652 atomic regions from SNP 105236 to 105836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,939 DEBUG Processing 236/715 atomic regions from SNP 70501 to 71101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,092 DEBUG Processing 352/652 atomic regions from SNP 105536 to 106136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,208 DEBUG Processing 237/715 atomic regions from SNP 70801 to 71401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,322 DEBUG Processing 353/652 atomic regions from SNP 105836 to 106436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,474 DEBUG Processing 238/715 atomic regions from SNP 71101 to 71701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,553 DEBUG Processing 354/652 atomic regions from SNP 106136 to 106736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,727 DEBUG Processing 239/715 atomic regions from SNP 71401 to 72001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,780 DEBUG Processing 355/652 atomic regions from SNP 106436 to 107036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,981 DEBUG Processing 240/715 atomic regions from SNP 71701 to 72301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,004 DEBUG Processing 356/652 atomic regions from SNP 106736 to 107336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,222 DEBUG Processing 241/715 atomic regions from SNP 72001 to 72601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,229 DEBUG Processing 357/652 atomic regions from SNP 107036 to 107636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,454 DEBUG Processing 358/652 atomic regions from SNP 107336 to 107936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,463 DEBUG Processing 242/715 atomic regions from SNP 72301 to 72901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,682 DEBUG Processing 359/652 atomic regions from SNP 107636 to 108236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,705 DEBUG Processing 243/715 atomic regions from SNP 72601 to 73201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,910 DEBUG Processing 360/652 atomic regions from SNP 107936 to 108536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,944 DEBUG Processing 244/715 atomic regions from SNP 72901 to 73501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,134 DEBUG Processing 361/652 atomic regions from SNP 108236 to 108836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,187 DEBUG Processing 245/715 atomic regions from SNP 73201 to 73801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,358 DEBUG Processing 362/652 atomic regions from SNP 108536 to 109136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,445 DEBUG Processing 246/715 atomic regions from SNP 73501 to 74101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,586 DEBUG Processing 363/652 atomic regions from SNP 108836 to 109436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,714 DEBUG Processing 247/715 atomic regions from SNP 73801 to 74401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,816 DEBUG Processing 364/652 atomic regions from SNP 109136 to 109736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,980 DEBUG Processing 248/715 atomic regions from SNP 74101 to 74701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,043 DEBUG Processing 365/652 atomic regions from SNP 109436 to 110036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,229 DEBUG Processing 249/715 atomic regions from SNP 74401 to 75001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,283 DEBUG Processing 366/652 atomic regions from SNP 109736 to 110336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,476 DEBUG Processing 250/715 atomic regions from SNP 74701 to 75301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,538 DEBUG Processing 367/652 atomic regions from SNP 110036 to 110636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,721 DEBUG Processing 251/715 atomic regions from SNP 75001 to 75601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,781 DEBUG Processing 368/652 atomic regions from SNP 110336 to 110936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,970 DEBUG Processing 252/715 atomic regions from SNP 75301 to 75901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,015 DEBUG Processing 369/652 atomic regions from SNP 110636 to 111236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,220 DEBUG Processing 253/715 atomic regions from SNP 75601 to 76201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,243 DEBUG Processing 370/652 atomic regions from SNP 110936 to 111536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,467 DEBUG Processing 254/715 atomic regions from SNP 75901 to 76501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,474 DEBUG Processing 371/652 atomic regions from SNP 111236 to 111836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,705 DEBUG Processing 372/652 atomic regions from SNP 111536 to 112136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,715 DEBUG Processing 255/715 atomic regions from SNP 76201 to 76801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,930 DEBUG Processing 373/652 atomic regions from SNP 111836 to 112436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,965 DEBUG Processing 256/715 atomic regions from SNP 76501 to 77101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,157 DEBUG Processing 374/652 atomic regions from SNP 112136 to 112736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,218 DEBUG Processing 257/715 atomic regions from SNP 76801 to 77401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,384 DEBUG Processing 375/652 atomic regions from SNP 112436 to 113036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,471 DEBUG Processing 258/715 atomic regions from SNP 77101 to 77701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,617 DEBUG Processing 376/652 atomic regions from SNP 112736 to 113336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,715 DEBUG Processing 259/715 atomic regions from SNP 77401 to 78001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,864 DEBUG Processing 377/652 atomic regions from SNP 113036 to 113636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,958 DEBUG Processing 260/715 atomic regions from SNP 77701 to 78301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,092 DEBUG Processing 378/652 atomic regions from SNP 113336 to 113936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,202 DEBUG Processing 261/715 atomic regions from SNP 78001 to 78601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,327 DEBUG Processing 379/652 atomic regions from SNP 113636 to 114236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,439 DEBUG Processing 262/715 atomic regions from SNP 78301 to 78901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,563 DEBUG Processing 380/652 atomic regions from SNP 113936 to 114536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,587 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:53:09,588 DEBUG chr13: Signal quantile: 0.988. signal threshold: 10. Best RMSEA: 0.010 2025-01-31 09:53:09,681 DEBUG Processing 263/715 atomic regions from SNP 78601 to 79201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,823 DEBUG Processing 381/652 atomic regions from SNP 114236 to 114836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,926 DEBUG Processing 264/715 atomic regions from SNP 78901 to 79501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,073 DEBUG Processing 382/652 atomic regions from SNP 114536 to 115136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,180 DEBUG Processing 265/715 atomic regions from SNP 79201 to 79801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,323 DEBUG Processing 383/652 atomic regions from SNP 114836 to 115436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,434 DEBUG Processing 266/715 atomic regions from SNP 79501 to 80101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,562 DEBUG Processing 384/652 atomic regions from SNP 115136 to 115736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,688 DEBUG Processing 267/715 atomic regions from SNP 79801 to 80401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,806 DEBUG Processing 385/652 atomic regions from SNP 115436 to 116036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,941 DEBUG Processing 268/715 atomic regions from SNP 80101 to 80701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,057 DEBUG Processing 386/652 atomic regions from SNP 115736 to 116336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,192 DEBUG Processing 269/715 atomic regions from SNP 80401 to 81001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,286 DEBUG Processing 387/652 atomic regions from SNP 116036 to 116636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,438 DEBUG Processing 270/715 atomic regions from SNP 80701 to 81301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,509 DEBUG Processing 388/652 atomic regions from SNP 116336 to 116936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,698 DEBUG Processing 271/715 atomic regions from SNP 81001 to 81601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,755 DEBUG Processing 389/652 atomic regions from SNP 116636 to 117236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,936 DEBUG chr13 total SNP count: 200749 2025-01-31 09:53:11,937 DEBUG chr13 length: 120421639 2025-01-31 09:53:11,937 DEBUG ----------------------------------------- 2025-01-31 09:53:11,937 INFO Processing SNPs in chr13 2025-01-31 09:53:11,959 DEBUG Processing 272/715 atomic regions from SNP 81301 to 81901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,997 DEBUG Processing 390/652 atomic regions from SNP 116936 to 117536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,154 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 200749)] 2025-01-31 09:53:12,202 DEBUG Processing 273/715 atomic regions from SNP 81601 to 82201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,229 DEBUG Processing 391/652 atomic regions from SNP 117236 to 117836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,301 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:12,450 DEBUG Processing 274/715 atomic regions from SNP 81901 to 82501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,471 DEBUG Processing 392/652 atomic regions from SNP 117536 to 118136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,694 DEBUG Processing 275/715 atomic regions from SNP 82201 to 82801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,719 DEBUG Processing 393/652 atomic regions from SNP 117836 to 118436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,939 DEBUG Processing 276/715 atomic regions from SNP 82501 to 83101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,966 DEBUG Processing 394/652 atomic regions from SNP 118136 to 118736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,199 DEBUG Processing 277/715 atomic regions from SNP 82801 to 83401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,208 DEBUG Processing 395/652 atomic regions from SNP 118436 to 119036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,442 DEBUG Processing 396/652 atomic regions from SNP 118736 to 119336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,457 DEBUG Processing 278/715 atomic regions from SNP 83101 to 83701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,680 DEBUG Processing 397/652 atomic regions from SNP 119036 to 119636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,695 DEBUG Processing 279/715 atomic regions from SNP 83401 to 84001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,919 DEBUG Processing 398/652 atomic regions from SNP 119336 to 119936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,936 DEBUG Processing 280/715 atomic regions from SNP 83701 to 84301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,156 DEBUG Processing 399/652 atomic regions from SNP 119636 to 120236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,173 DEBUG Processing 281/715 atomic regions from SNP 84001 to 84601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,397 DEBUG Processing 400/652 atomic regions from SNP 119936 to 120536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,421 DEBUG Processing 282/715 atomic regions from SNP 84301 to 84901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,640 DEBUG Processing 401/652 atomic regions from SNP 120236 to 120836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,661 DEBUG Processing 283/715 atomic regions from SNP 84601 to 85201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,878 DEBUG Processing 402/652 atomic regions from SNP 120536 to 121136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,903 DEBUG Processing 284/715 atomic regions from SNP 84901 to 85501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,142 DEBUG Processing 403/652 atomic regions from SNP 120836 to 121436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,153 DEBUG Processing 285/715 atomic regions from SNP 85201 to 85801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,400 DEBUG Processing 286/715 atomic regions from SNP 85501 to 86101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,409 DEBUG Processing 404/652 atomic regions from SNP 121136 to 121736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,643 DEBUG Processing 287/715 atomic regions from SNP 85801 to 86401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,652 DEBUG Processing 405/652 atomic regions from SNP 121436 to 122036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,886 DEBUG Processing 288/715 atomic regions from SNP 86101 to 86701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,889 DEBUG Processing 406/652 atomic regions from SNP 121736 to 122336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,125 DEBUG Processing 289/715 atomic regions from SNP 86401 to 87001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,129 DEBUG Processing 407/652 atomic regions from SNP 122036 to 122636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,364 DEBUG Processing 408/652 atomic regions from SNP 122336 to 122936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,365 DEBUG Processing 290/715 atomic regions from SNP 86701 to 87301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,606 DEBUG Processing 291/715 atomic regions from SNP 87001 to 87601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,611 DEBUG Processing 409/652 atomic regions from SNP 122636 to 123236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,836 DEBUG Processing 292/715 atomic regions from SNP 87301 to 87901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,846 DEBUG Processing 410/652 atomic regions from SNP 122936 to 123536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,069 DEBUG Processing 293/715 atomic regions from SNP 87601 to 88201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,081 DEBUG Processing 411/652 atomic regions from SNP 123236 to 123836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,309 DEBUG Processing 294/715 atomic regions from SNP 87901 to 88501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,321 DEBUG Processing 412/652 atomic regions from SNP 123536 to 124136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,563 DEBUG Processing 295/715 atomic regions from SNP 88201 to 88801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,569 DEBUG Processing 413/652 atomic regions from SNP 123836 to 124436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,809 DEBUG Processing 296/715 atomic regions from SNP 88501 to 89101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,827 DEBUG Processing 414/652 atomic regions from SNP 124136 to 124736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,053 DEBUG Processing 297/715 atomic regions from SNP 88801 to 89401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,072 DEBUG Processing 415/652 atomic regions from SNP 124436 to 125036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,296 DEBUG Processing 298/715 atomic regions from SNP 89101 to 89701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,305 DEBUG Processing 416/652 atomic regions from SNP 124736 to 125336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,538 DEBUG Processing 417/652 atomic regions from SNP 125036 to 125636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,548 DEBUG Processing 299/715 atomic regions from SNP 89401 to 90001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,767 DEBUG Processing 418/652 atomic regions from SNP 125336 to 125936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,808 DEBUG Processing 300/715 atomic regions from SNP 89701 to 90301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,000 DEBUG Processing 419/652 atomic regions from SNP 125636 to 126236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,066 DEBUG Processing 301/715 atomic regions from SNP 90001 to 90601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,246 DEBUG Processing 420/652 atomic regions from SNP 125936 to 126536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,309 DEBUG Processing 302/715 atomic regions from SNP 90301 to 90901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,477 DEBUG Processing 421/652 atomic regions from SNP 126236 to 126836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,548 DEBUG Processing 303/715 atomic regions from SNP 90601 to 91201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,700 DEBUG Processing 422/652 atomic regions from SNP 126536 to 127136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,790 DEBUG Processing 304/715 atomic regions from SNP 90901 to 91501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,931 DEBUG Processing 423/652 atomic regions from SNP 126836 to 127436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,033 DEBUG Processing 305/715 atomic regions from SNP 91201 to 91801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,168 DEBUG Processing 424/652 atomic regions from SNP 127136 to 127736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,272 DEBUG Processing 306/715 atomic regions from SNP 91501 to 92101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,410 DEBUG Processing 425/652 atomic regions from SNP 127436 to 128036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,512 DEBUG Processing 307/715 atomic regions from SNP 91801 to 92401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,647 DEBUG Processing 426/652 atomic regions from SNP 127736 to 128336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,757 DEBUG Processing 308/715 atomic regions from SNP 92101 to 92701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,885 DEBUG Processing 427/652 atomic regions from SNP 128036 to 128636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,008 DEBUG Processing 309/715 atomic regions from SNP 92401 to 93001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,121 DEBUG Processing 428/652 atomic regions from SNP 128336 to 128936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,249 DEBUG Processing 310/715 atomic regions from SNP 92701 to 93301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,349 DEBUG Processing 429/652 atomic regions from SNP 128636 to 129236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,495 DEBUG Processing 311/715 atomic regions from SNP 93001 to 93601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,579 DEBUG Processing 430/652 atomic regions from SNP 128936 to 129536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,746 DEBUG Processing 312/715 atomic regions from SNP 93301 to 93901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,818 DEBUG Processing 431/652 atomic regions from SNP 129236 to 129836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,988 DEBUG Processing 313/715 atomic regions from SNP 93601 to 94201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,047 DEBUG Processing 432/652 atomic regions from SNP 129536 to 130136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,255 DEBUG Processing 314/715 atomic regions from SNP 93901 to 94501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,282 DEBUG Processing 433/652 atomic regions from SNP 129836 to 130436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,516 DEBUG Processing 434/652 atomic regions from SNP 130136 to 130736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,535 DEBUG Processing 315/715 atomic regions from SNP 94201 to 94801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,750 DEBUG Processing 435/652 atomic regions from SNP 130436 to 131036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,815 DEBUG Processing 316/715 atomic regions from SNP 94501 to 95101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,983 DEBUG Processing 436/652 atomic regions from SNP 130736 to 131336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,084 DEBUG Processing 317/715 atomic regions from SNP 94801 to 95401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,214 DEBUG Processing 437/652 atomic regions from SNP 131036 to 131636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,360 DEBUG Processing 318/715 atomic regions from SNP 95101 to 95701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,443 DEBUG Processing 438/652 atomic regions from SNP 131336 to 131936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,642 DEBUG Processing 319/715 atomic regions from SNP 95401 to 96001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,672 DEBUG Processing 439/652 atomic regions from SNP 131636 to 132236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,908 DEBUG Processing 440/652 atomic regions from SNP 131936 to 132536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,921 DEBUG Processing 320/715 atomic regions from SNP 95701 to 96301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,144 DEBUG Processing 441/652 atomic regions from SNP 132236 to 132836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,189 DEBUG Processing 321/715 atomic regions from SNP 96001 to 96601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,396 DEBUG Processing 442/652 atomic regions from SNP 132536 to 133136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,461 DEBUG Processing 322/715 atomic regions from SNP 96301 to 96901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,629 DEBUG Processing 443/652 atomic regions from SNP 132836 to 133436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,737 DEBUG Processing 323/715 atomic regions from SNP 96601 to 97201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,853 DEBUG Processing 444/652 atomic regions from SNP 133136 to 133736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,013 DEBUG Processing 324/715 atomic regions from SNP 96901 to 97501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,081 DEBUG Processing 445/652 atomic regions from SNP 133436 to 134036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,284 DEBUG Processing 325/715 atomic regions from SNP 97201 to 97801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,313 DEBUG Processing 446/652 atomic regions from SNP 133736 to 134336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,540 DEBUG Processing 447/652 atomic regions from SNP 134036 to 134636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,543 DEBUG Processing 326/715 atomic regions from SNP 97501 to 98101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,784 DEBUG Processing 448/652 atomic regions from SNP 134336 to 134936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,796 DEBUG Processing 327/715 atomic regions from SNP 97801 to 98401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,017 DEBUG Processing 449/652 atomic regions from SNP 134636 to 135236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,051 DEBUG Processing 328/715 atomic regions from SNP 98101 to 98701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,250 DEBUG Processing 450/652 atomic regions from SNP 134936 to 135536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,324 DEBUG Processing 329/715 atomic regions from SNP 98401 to 99001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,481 DEBUG Processing 451/652 atomic regions from SNP 135236 to 135836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,568 DEBUG Processing 330/715 atomic regions from SNP 98701 to 99301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,710 DEBUG Processing 452/652 atomic regions from SNP 135536 to 136136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,838 DEBUG Processing 331/715 atomic regions from SNP 99001 to 99601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,941 DEBUG Processing 453/652 atomic regions from SNP 135836 to 136436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,028 DEBUG Segmenting atomic regions: 2025-01-31 09:53:27,101 DEBUG Processing 332/715 atomic regions from SNP 99301 to 99901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,132 DEBUG Processing 1/696 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,181 DEBUG Processing 454/652 atomic regions from SNP 136136 to 136736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,344 DEBUG Processing 333/715 atomic regions from SNP 99601 to 100201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,405 DEBUG Processing 2/696 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,415 DEBUG Processing 455/652 atomic regions from SNP 136436 to 137036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,589 DEBUG Processing 334/715 atomic regions from SNP 99901 to 100501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,648 DEBUG Processing 456/652 atomic regions from SNP 136736 to 137336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,653 DEBUG Processing 3/696 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,834 DEBUG Processing 335/715 atomic regions from SNP 100201 to 100801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,880 DEBUG Processing 457/652 atomic regions from SNP 137036 to 137636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,898 DEBUG Processing 4/696 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,080 DEBUG Processing 336/715 atomic regions from SNP 100501 to 101101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,108 DEBUG Processing 458/652 atomic regions from SNP 137336 to 137936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,141 DEBUG Processing 5/696 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,327 DEBUG Processing 337/715 atomic regions from SNP 100801 to 101401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,334 DEBUG Processing 459/652 atomic regions from SNP 137636 to 138236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,392 DEBUG Processing 6/696 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,561 DEBUG Processing 460/652 atomic regions from SNP 137936 to 138536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,588 DEBUG Processing 338/715 atomic regions from SNP 101101 to 101701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,680 DEBUG Processing 7/696 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,784 DEBUG Processing 461/652 atomic regions from SNP 138236 to 138836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,839 DEBUG Processing 339/715 atomic regions from SNP 101401 to 102001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,944 DEBUG Processing 8/696 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,009 DEBUG Processing 462/652 atomic regions from SNP 138536 to 139136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,087 DEBUG Processing 340/715 atomic regions from SNP 101701 to 102301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,183 DEBUG Processing 9/696 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,235 DEBUG Processing 463/652 atomic regions from SNP 138836 to 139436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,332 DEBUG Processing 341/715 atomic regions from SNP 102001 to 102601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,434 DEBUG Processing 10/696 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,463 DEBUG Processing 464/652 atomic regions from SNP 139136 to 139736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,592 DEBUG Processing 342/715 atomic regions from SNP 102301 to 102901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,696 DEBUG Processing 465/652 atomic regions from SNP 139436 to 140036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,696 DEBUG Processing 11/696 atomic regions from SNP 3010 to 3610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,843 DEBUG Processing 343/715 atomic regions from SNP 102601 to 103201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,926 DEBUG Processing 466/652 atomic regions from SNP 139736 to 140336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,970 DEBUG Processing 12/696 atomic regions from SNP 3310 to 3910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,093 DEBUG Processing 344/715 atomic regions from SNP 102901 to 103501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,151 DEBUG Processing 467/652 atomic regions from SNP 140036 to 140636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,244 DEBUG Processing 13/696 atomic regions from SNP 3610 to 4210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,352 DEBUG Processing 345/715 atomic regions from SNP 103201 to 103801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,378 DEBUG Processing 468/652 atomic regions from SNP 140336 to 140936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,492 DEBUG Processing 14/696 atomic regions from SNP 3910 to 4510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,604 DEBUG Processing 469/652 atomic regions from SNP 140636 to 141236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,625 DEBUG Processing 346/715 atomic regions from SNP 103501 to 104101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,736 DEBUG Processing 15/696 atomic regions from SNP 4210 to 4810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,830 DEBUG Processing 470/652 atomic regions from SNP 140936 to 141536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,899 DEBUG Processing 347/715 atomic regions from SNP 103801 to 104401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,989 DEBUG Processing 16/696 atomic regions from SNP 4510 to 5110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,057 DEBUG Processing 471/652 atomic regions from SNP 141236 to 141836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,177 DEBUG Processing 348/715 atomic regions from SNP 104101 to 104701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,246 DEBUG Processing 17/696 atomic regions from SNP 4810 to 5410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,286 DEBUG Processing 472/652 atomic regions from SNP 141536 to 142136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,451 DEBUG Processing 349/715 atomic regions from SNP 104401 to 105001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,513 DEBUG Processing 473/652 atomic regions from SNP 141836 to 142436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,524 DEBUG Processing 18/696 atomic regions from SNP 5110 to 5710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,700 DEBUG Processing 350/715 atomic regions from SNP 104701 to 105301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,740 DEBUG Processing 474/652 atomic regions from SNP 142136 to 142736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,773 DEBUG Processing 19/696 atomic regions from SNP 5410 to 6010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,966 DEBUG Processing 475/652 atomic regions from SNP 142436 to 143036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,973 DEBUG Processing 351/715 atomic regions from SNP 105001 to 105601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,036 DEBUG Processing 20/696 atomic regions from SNP 5710 to 6310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,190 DEBUG Processing 476/652 atomic regions from SNP 142736 to 143336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,233 DEBUG Processing 352/715 atomic regions from SNP 105301 to 105901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,317 DEBUG Processing 21/696 atomic regions from SNP 6010 to 6610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,412 DEBUG Processing 477/652 atomic regions from SNP 143036 to 143636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,484 DEBUG Processing 353/715 atomic regions from SNP 105601 to 106201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,594 DEBUG Processing 22/696 atomic regions from SNP 6310 to 6910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,635 DEBUG Processing 478/652 atomic regions from SNP 143336 to 143936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,732 DEBUG Processing 354/715 atomic regions from SNP 105901 to 106501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,843 DEBUG Processing 23/696 atomic regions from SNP 6610 to 7210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,860 DEBUG Processing 479/652 atomic regions from SNP 143636 to 144236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,980 DEBUG Processing 355/715 atomic regions from SNP 106201 to 106801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,086 DEBUG Processing 480/652 atomic regions from SNP 143936 to 144536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,091 DEBUG Processing 24/696 atomic regions from SNP 6910 to 7510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,229 DEBUG Processing 356/715 atomic regions from SNP 106501 to 107101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,310 DEBUG Processing 481/652 atomic regions from SNP 144236 to 144836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,336 DEBUG Processing 25/696 atomic regions from SNP 7210 to 7810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,505 DEBUG Processing 357/715 atomic regions from SNP 106801 to 107401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,537 DEBUG Processing 482/652 atomic regions from SNP 144536 to 145136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,579 DEBUG Processing 26/696 atomic regions from SNP 7510 to 8110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,763 DEBUG Processing 483/652 atomic regions from SNP 144836 to 145436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,774 DEBUG Processing 358/715 atomic regions from SNP 107101 to 107701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,822 DEBUG Processing 27/696 atomic regions from SNP 7810 to 8410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,988 DEBUG Processing 484/652 atomic regions from SNP 145136 to 145736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,058 DEBUG Processing 359/715 atomic regions from SNP 107401 to 108001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,068 DEBUG Processing 28/696 atomic regions from SNP 8110 to 8710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,220 DEBUG Processing 485/652 atomic regions from SNP 145436 to 146036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,316 DEBUG Processing 29/696 atomic regions from SNP 8410 to 9010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,339 DEBUG Processing 360/715 atomic regions from SNP 107701 to 108301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,442 DEBUG Processing 486/652 atomic regions from SNP 145736 to 146336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,562 DEBUG Processing 30/696 atomic regions from SNP 8710 to 9310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,615 DEBUG Processing 361/715 atomic regions from SNP 108001 to 108601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,664 DEBUG Processing 487/652 atomic regions from SNP 146036 to 146636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,804 DEBUG Processing 31/696 atomic regions from SNP 9010 to 9610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,887 DEBUG Processing 488/652 atomic regions from SNP 146336 to 146936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,890 DEBUG Processing 362/715 atomic regions from SNP 108301 to 108901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,044 DEBUG Processing 32/696 atomic regions from SNP 9310 to 9910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,115 DEBUG Processing 489/652 atomic regions from SNP 146636 to 147236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,168 DEBUG Processing 363/715 atomic regions from SNP 108601 to 109201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,284 DEBUG Processing 33/696 atomic regions from SNP 9610 to 10210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,343 DEBUG Processing 490/652 atomic regions from SNP 146936 to 147536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,455 DEBUG Processing 364/715 atomic regions from SNP 108901 to 109501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,532 DEBUG Processing 34/696 atomic regions from SNP 9910 to 10510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,573 DEBUG Processing 491/652 atomic regions from SNP 147236 to 147836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,722 DEBUG Processing 365/715 atomic regions from SNP 109201 to 109801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,772 DEBUG Processing 35/696 atomic regions from SNP 10210 to 10810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,801 DEBUG Processing 492/652 atomic regions from SNP 147536 to 148136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,998 DEBUG Processing 366/715 atomic regions from SNP 109501 to 110101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,013 DEBUG Processing 36/696 atomic regions from SNP 10510 to 11110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,024 DEBUG Processing 493/652 atomic regions from SNP 147836 to 148436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,250 DEBUG Processing 494/652 atomic regions from SNP 148136 to 148736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,260 DEBUG Processing 37/696 atomic regions from SNP 10810 to 11410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,276 DEBUG Processing 367/715 atomic regions from SNP 109801 to 110401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,473 DEBUG Processing 495/652 atomic regions from SNP 148436 to 149036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,508 DEBUG Processing 38/696 atomic regions from SNP 11110 to 11710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,550 DEBUG Processing 368/715 atomic regions from SNP 110101 to 110701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,697 DEBUG Processing 496/652 atomic regions from SNP 148736 to 149336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,752 DEBUG Processing 39/696 atomic regions from SNP 11410 to 12010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,830 DEBUG Processing 369/715 atomic regions from SNP 110401 to 111001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,921 DEBUG Processing 497/652 atomic regions from SNP 149036 to 149636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,997 DEBUG Processing 40/696 atomic regions from SNP 11710 to 12310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,088 DEBUG Processing 370/715 atomic regions from SNP 110701 to 111301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,089 DEBUG Segmenting atomic regions: 2025-01-31 09:53:37,146 DEBUG Processing 498/652 atomic regions from SNP 149336 to 149936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,188 DEBUG Processing 1/668 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,242 DEBUG Processing 41/696 atomic regions from SNP 12010 to 12610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,346 DEBUG Processing 371/715 atomic regions from SNP 111001 to 111601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,376 DEBUG Processing 499/652 atomic regions from SNP 149636 to 150236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,428 DEBUG Processing 2/668 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,487 DEBUG Processing 42/696 atomic regions from SNP 12310 to 12910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,612 DEBUG Processing 500/652 atomic regions from SNP 149936 to 150536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,613 DEBUG Processing 372/715 atomic regions from SNP 111301 to 111901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,666 DEBUG Processing 3/668 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,726 DEBUG Processing 43/696 atomic regions from SNP 12610 to 13210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,850 DEBUG Processing 501/652 atomic regions from SNP 150236 to 150836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,883 DEBUG Processing 373/715 atomic regions from SNP 111601 to 112201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,907 DEBUG Processing 4/668 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,967 DEBUG Processing 44/696 atomic regions from SNP 12910 to 13510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,085 DEBUG Processing 502/652 atomic regions from SNP 150536 to 151136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,139 DEBUG Processing 374/715 atomic regions from SNP 111901 to 112501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,143 DEBUG Processing 5/668 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,204 DEBUG Processing 45/696 atomic regions from SNP 13210 to 13810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,315 DEBUG Processing 503/652 atomic regions from SNP 150836 to 151436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,377 DEBUG Processing 6/668 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,416 DEBUG Processing 375/715 atomic regions from SNP 112201 to 112801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,448 DEBUG Processing 46/696 atomic regions from SNP 13510 to 14110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,549 DEBUG Processing 504/652 atomic regions from SNP 151136 to 151736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,620 DEBUG Processing 7/668 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,694 DEBUG Processing 376/715 atomic regions from SNP 112501 to 113101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,704 DEBUG Processing 47/696 atomic regions from SNP 13810 to 14410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,770 DEBUG Processing 505/652 atomic regions from SNP 151436 to 152036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,859 DEBUG Processing 8/668 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,955 DEBUG Processing 48/696 atomic regions from SNP 14110 to 14710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,959 DEBUG Processing 377/715 atomic regions from SNP 112801 to 113401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,998 DEBUG Processing 506/652 atomic regions from SNP 151736 to 152336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,098 DEBUG Processing 9/668 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,196 DEBUG Processing 49/696 atomic regions from SNP 14410 to 15010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,227 DEBUG Processing 507/652 atomic regions from SNP 152036 to 152636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,232 DEBUG Processing 378/715 atomic regions from SNP 113101 to 113701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,337 DEBUG Processing 10/668 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,455 DEBUG Processing 50/696 atomic regions from SNP 14710 to 15310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,463 DEBUG Processing 508/652 atomic regions from SNP 152336 to 152936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,478 DEBUG Processing 379/715 atomic regions from SNP 113401 to 114001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,579 DEBUG Processing 11/668 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,702 DEBUG Processing 509/652 atomic regions from SNP 152636 to 153236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,702 DEBUG Processing 51/696 atomic regions from SNP 15010 to 15610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,726 DEBUG Processing 380/715 atomic regions from SNP 113701 to 114301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,815 DEBUG Processing 12/668 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,945 DEBUG Processing 510/652 atomic regions from SNP 152936 to 153536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,952 DEBUG Processing 52/696 atomic regions from SNP 15310 to 15910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,977 DEBUG Processing 381/715 atomic regions from SNP 114001 to 114601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,050 DEBUG Processing 13/668 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,185 DEBUG Processing 511/652 atomic regions from SNP 153236 to 153836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,196 DEBUG Processing 53/696 atomic regions from SNP 15610 to 16210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,224 DEBUG Processing 382/715 atomic regions from SNP 114301 to 114901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,280 DEBUG Processing 14/668 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,421 DEBUG Processing 512/652 atomic regions from SNP 153536 to 154136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,441 DEBUG Processing 54/696 atomic regions from SNP 15910 to 16510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,473 DEBUG Processing 383/715 atomic regions from SNP 114601 to 115201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,516 DEBUG Processing 15/668 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,650 DEBUG Processing 513/652 atomic regions from SNP 153836 to 154436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,683 DEBUG Processing 55/696 atomic regions from SNP 16210 to 16810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,723 DEBUG Processing 384/715 atomic regions from SNP 114901 to 115501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,749 DEBUG Processing 16/668 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,880 DEBUG Processing 514/652 atomic regions from SNP 154136 to 154736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,929 DEBUG Processing 56/696 atomic regions from SNP 16510 to 17110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,973 DEBUG Processing 385/715 atomic regions from SNP 115201 to 115801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,987 DEBUG Processing 17/668 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,107 DEBUG Processing 515/652 atomic regions from SNP 154436 to 155036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,175 DEBUG Processing 57/696 atomic regions from SNP 16810 to 17410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,229 DEBUG Processing 18/668 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,229 DEBUG Processing 386/715 atomic regions from SNP 115501 to 116101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,335 DEBUG Processing 516/652 atomic regions from SNP 154736 to 155336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,417 DEBUG Processing 58/696 atomic regions from SNP 17110 to 17710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,465 DEBUG Processing 19/668 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,483 DEBUG Processing 387/715 atomic regions from SNP 115801 to 116401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,565 DEBUG Processing 517/652 atomic regions from SNP 155036 to 155636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,656 DEBUG Processing 59/696 atomic regions from SNP 17410 to 18010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,698 DEBUG Processing 20/668 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,736 DEBUG Processing 388/715 atomic regions from SNP 116101 to 116701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,799 DEBUG Processing 518/652 atomic regions from SNP 155336 to 155936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,894 DEBUG Processing 60/696 atomic regions from SNP 17710 to 18310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,929 DEBUG Processing 21/668 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,984 DEBUG Processing 389/715 atomic regions from SNP 116401 to 117001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,034 DEBUG Processing 519/652 atomic regions from SNP 155636 to 156236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,134 DEBUG Processing 61/696 atomic regions from SNP 18010 to 18610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,156 DEBUG Processing 22/668 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,229 DEBUG Processing 390/715 atomic regions from SNP 116701 to 117301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,269 DEBUG Processing 520/652 atomic regions from SNP 155936 to 156536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,379 DEBUG Processing 62/696 atomic regions from SNP 18310 to 18910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,389 DEBUG Processing 23/668 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,481 DEBUG Processing 391/715 atomic regions from SNP 117001 to 117601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,506 DEBUG Processing 521/652 atomic regions from SNP 156236 to 156836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,619 DEBUG Processing 24/668 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,624 DEBUG Processing 63/696 atomic regions from SNP 18610 to 19210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,730 DEBUG Processing 392/715 atomic regions from SNP 117301 to 117901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,737 DEBUG Processing 522/652 atomic regions from SNP 156536 to 157136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,844 DEBUG Processing 25/668 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,864 DEBUG Processing 64/696 atomic regions from SNP 18910 to 19510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,962 DEBUG Processing 523/652 atomic regions from SNP 156836 to 157436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,978 DEBUG Processing 393/715 atomic regions from SNP 117601 to 118201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,067 DEBUG Processing 26/668 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,100 DEBUG Processing 65/696 atomic regions from SNP 19210 to 19810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,193 DEBUG Processing 524/652 atomic regions from SNP 157136 to 157736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,230 DEBUG Processing 394/715 atomic regions from SNP 117901 to 118501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,290 DEBUG Processing 27/668 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,332 DEBUG Processing 66/696 atomic regions from SNP 19510 to 20110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,424 DEBUG Processing 525/652 atomic regions from SNP 157436 to 158036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,485 DEBUG Processing 395/715 atomic regions from SNP 118201 to 118801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,517 DEBUG Processing 28/668 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,570 DEBUG Processing 67/696 atomic regions from SNP 19810 to 20410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,649 DEBUG Processing 526/652 atomic regions from SNP 157736 to 158336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,735 DEBUG Processing 396/715 atomic regions from SNP 118501 to 119101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,748 DEBUG Processing 29/668 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,806 DEBUG Processing 68/696 atomic regions from SNP 20110 to 20710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,876 DEBUG Processing 527/652 atomic regions from SNP 158036 to 158636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,979 DEBUG Processing 30/668 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,990 DEBUG Processing 397/715 atomic regions from SNP 118801 to 119401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,048 DEBUG Processing 69/696 atomic regions from SNP 20410 to 21010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,097 DEBUG Processing 528/652 atomic regions from SNP 158336 to 158936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,210 DEBUG Processing 31/668 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,240 DEBUG Processing 398/715 atomic regions from SNP 119101 to 119701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,296 DEBUG Processing 70/696 atomic regions from SNP 20710 to 21310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,322 DEBUG Processing 529/652 atomic regions from SNP 158636 to 159236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,435 DEBUG Processing 32/668 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,482 DEBUG Processing 399/715 atomic regions from SNP 119401 to 120001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,533 DEBUG Processing 71/696 atomic regions from SNP 21010 to 21610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,544 DEBUG Processing 530/652 atomic regions from SNP 158936 to 159536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,661 DEBUG Processing 33/668 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,735 DEBUG Processing 400/715 atomic regions from SNP 119701 to 120301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,776 DEBUG Processing 72/696 atomic regions from SNP 21310 to 21910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,778 DEBUG Processing 531/652 atomic regions from SNP 159236 to 159836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,886 DEBUG Processing 34/668 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,983 DEBUG Processing 401/715 atomic regions from SNP 120001 to 120601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,021 DEBUG Processing 73/696 atomic regions from SNP 21610 to 22210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,027 DEBUG Processing 532/652 atomic regions from SNP 159536 to 160136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,110 DEBUG Processing 35/668 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,236 DEBUG Processing 402/715 atomic regions from SNP 120301 to 120901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,265 DEBUG Processing 74/696 atomic regions from SNP 21910 to 22510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,270 DEBUG Processing 533/652 atomic regions from SNP 159836 to 160436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,335 DEBUG Processing 36/668 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,481 DEBUG Processing 403/715 atomic regions from SNP 120601 to 121201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,503 DEBUG Processing 534/652 atomic regions from SNP 160136 to 160736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,510 DEBUG Processing 75/696 atomic regions from SNP 22210 to 22810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,564 DEBUG Processing 37/668 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,731 DEBUG Processing 404/715 atomic regions from SNP 120901 to 121501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,735 DEBUG Processing 535/652 atomic regions from SNP 160436 to 161036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,754 DEBUG Processing 76/696 atomic regions from SNP 22510 to 23110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,797 DEBUG Processing 38/668 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,962 DEBUG Processing 536/652 atomic regions from SNP 160736 to 161336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,982 DEBUG Processing 405/715 atomic regions from SNP 121201 to 121801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,999 DEBUG Processing 77/696 atomic regions from SNP 22810 to 23410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,035 DEBUG Processing 39/668 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,191 DEBUG Processing 537/652 atomic regions from SNP 161036 to 161636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,246 DEBUG Processing 78/696 atomic regions from SNP 23110 to 23710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,250 DEBUG Processing 406/715 atomic regions from SNP 121501 to 122101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,271 DEBUG Processing 40/668 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,417 DEBUG Processing 538/652 atomic regions from SNP 161336 to 161936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,496 DEBUG Processing 79/696 atomic regions from SNP 23410 to 24010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,503 DEBUG Processing 407/715 atomic regions from SNP 121801 to 122401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,509 DEBUG Processing 41/668 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,644 DEBUG Processing 539/652 atomic regions from SNP 161636 to 162236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,737 DEBUG Processing 80/696 atomic regions from SNP 23710 to 24310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,741 DEBUG Processing 42/668 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,753 DEBUG Processing 408/715 atomic regions from SNP 122101 to 122701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,871 DEBUG Processing 540/652 atomic regions from SNP 161936 to 162536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,969 DEBUG Processing 43/668 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,977 DEBUG Processing 81/696 atomic regions from SNP 24010 to 24610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,003 DEBUG Processing 409/715 atomic regions from SNP 122401 to 123001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,099 DEBUG Processing 541/652 atomic regions from SNP 162236 to 162836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,199 DEBUG Processing 44/668 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,213 DEBUG Processing 82/696 atomic regions from SNP 24310 to 24910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,250 DEBUG Processing 410/715 atomic regions from SNP 122701 to 123301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,326 DEBUG Processing 542/652 atomic regions from SNP 162536 to 163136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,433 DEBUG Processing 45/668 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,457 DEBUG Processing 83/696 atomic regions from SNP 24610 to 25210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,526 DEBUG Processing 411/715 atomic regions from SNP 123001 to 123601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,551 DEBUG Processing 543/652 atomic regions from SNP 162836 to 163436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,668 DEBUG Processing 46/668 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,712 DEBUG Processing 84/696 atomic regions from SNP 24910 to 25510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,780 DEBUG Processing 544/652 atomic regions from SNP 163136 to 163736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,818 DEBUG Processing 412/715 atomic regions from SNP 123301 to 123901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,904 DEBUG Processing 47/668 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,955 DEBUG Processing 85/696 atomic regions from SNP 25210 to 25810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,010 DEBUG Processing 545/652 atomic regions from SNP 163436 to 164036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,083 DEBUG Processing 413/715 atomic regions from SNP 123601 to 124201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,139 DEBUG Processing 48/668 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,197 DEBUG Processing 86/696 atomic regions from SNP 25510 to 26110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,234 DEBUG Processing 546/652 atomic regions from SNP 163736 to 164336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,331 DEBUG Processing 414/715 atomic regions from SNP 123901 to 124501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,376 DEBUG Processing 49/668 atomic regions from SNP 14448 to 15048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,438 DEBUG Processing 87/696 atomic regions from SNP 25810 to 26410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,461 DEBUG Processing 547/652 atomic regions from SNP 164036 to 164636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,582 DEBUG Processing 415/715 atomic regions from SNP 124201 to 124801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,608 DEBUG Processing 50/668 atomic regions from SNP 14748 to 15348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,681 DEBUG Processing 88/696 atomic regions from SNP 26110 to 26710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,696 DEBUG Processing 548/652 atomic regions from SNP 164336 to 164936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,833 DEBUG Processing 416/715 atomic regions from SNP 124501 to 125101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,838 DEBUG Processing 51/668 atomic regions from SNP 15048 to 15648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,926 DEBUG Processing 89/696 atomic regions from SNP 26410 to 27010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,930 DEBUG Processing 549/652 atomic regions from SNP 164636 to 165236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,066 DEBUG Processing 52/668 atomic regions from SNP 15348 to 15948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,080 DEBUG Processing 417/715 atomic regions from SNP 124801 to 125401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,165 DEBUG Processing 550/652 atomic regions from SNP 164936 to 165536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,167 DEBUG Processing 90/696 atomic regions from SNP 26710 to 27310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,291 DEBUG Processing 53/668 atomic regions from SNP 15648 to 16248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,324 DEBUG Processing 418/715 atomic regions from SNP 125101 to 125701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,398 DEBUG Processing 551/652 atomic regions from SNP 165236 to 165836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,409 DEBUG Processing 91/696 atomic regions from SNP 27010 to 27610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,515 DEBUG Processing 54/668 atomic regions from SNP 15948 to 16548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,571 DEBUG Processing 419/715 atomic regions from SNP 125401 to 126001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,632 DEBUG Processing 552/652 atomic regions from SNP 165536 to 166136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,650 DEBUG Processing 92/696 atomic regions from SNP 27310 to 27910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,741 DEBUG Processing 55/668 atomic regions from SNP 16248 to 16848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,834 DEBUG Processing 420/715 atomic regions from SNP 125701 to 126301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,867 DEBUG Processing 553/652 atomic regions from SNP 165836 to 166436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,890 DEBUG Processing 93/696 atomic regions from SNP 27610 to 28210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,970 DEBUG Processing 56/668 atomic regions from SNP 16548 to 17148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,087 DEBUG Processing 421/715 atomic regions from SNP 126001 to 126601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,099 DEBUG Processing 554/652 atomic regions from SNP 166136 to 166736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,137 DEBUG Processing 94/696 atomic regions from SNP 27910 to 28510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,206 DEBUG Processing 57/668 atomic regions from SNP 16848 to 17448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,341 DEBUG Processing 555/652 atomic regions from SNP 166436 to 167036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,357 DEBUG Processing 422/715 atomic regions from SNP 126301 to 126901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,400 DEBUG Processing 95/696 atomic regions from SNP 28210 to 28810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,444 DEBUG Processing 58/668 atomic regions from SNP 17148 to 17748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,585 DEBUG Processing 556/652 atomic regions from SNP 166736 to 167336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,622 DEBUG Processing 423/715 atomic regions from SNP 126601 to 127201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,661 DEBUG Processing 96/696 atomic regions from SNP 28510 to 29110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,681 DEBUG Processing 59/668 atomic regions from SNP 17448 to 18048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,822 DEBUG Processing 557/652 atomic regions from SNP 167036 to 167636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,883 DEBUG Processing 424/715 atomic regions from SNP 126901 to 127501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,918 DEBUG Processing 97/696 atomic regions from SNP 28810 to 29410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,939 DEBUG Processing 60/668 atomic regions from SNP 17748 to 18348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,050 DEBUG Processing 558/652 atomic regions from SNP 167336 to 167936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,133 DEBUG Processing 425/715 atomic regions from SNP 127201 to 127801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,165 DEBUG Processing 61/668 atomic regions from SNP 18048 to 18648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,172 DEBUG Processing 98/696 atomic regions from SNP 29110 to 29710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,279 DEBUG Processing 559/652 atomic regions from SNP 167636 to 168236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,376 DEBUG Processing 426/715 atomic regions from SNP 127501 to 128101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,385 DEBUG Processing 62/668 atomic regions from SNP 18348 to 18948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,411 DEBUG Processing 99/696 atomic regions from SNP 29410 to 30010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,507 DEBUG Processing 560/652 atomic regions from SNP 167936 to 168536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,610 DEBUG Processing 63/668 atomic regions from SNP 18648 to 19248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,618 DEBUG Processing 427/715 atomic regions from SNP 127801 to 128401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,648 DEBUG Processing 100/696 atomic regions from SNP 29710 to 30310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,741 DEBUG Processing 561/652 atomic regions from SNP 168236 to 168836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,832 DEBUG Processing 64/668 atomic regions from SNP 18948 to 19548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,867 DEBUG Processing 428/715 atomic regions from SNP 128101 to 128701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,888 DEBUG Processing 101/696 atomic regions from SNP 30010 to 30610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,967 DEBUG Processing 562/652 atomic regions from SNP 168536 to 169136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,057 DEBUG Processing 65/668 atomic regions from SNP 19248 to 19848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,137 DEBUG Processing 102/696 atomic regions from SNP 30310 to 30910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,153 DEBUG Processing 429/715 atomic regions from SNP 128401 to 129001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,217 DEBUG Processing 563/652 atomic regions from SNP 168836 to 169436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,297 DEBUG Processing 66/668 atomic regions from SNP 19548 to 20148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,380 DEBUG Processing 103/696 atomic regions from SNP 30610 to 31210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,431 DEBUG Processing 430/715 atomic regions from SNP 128701 to 129301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,439 DEBUG Processing 564/652 atomic regions from SNP 169136 to 169736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,517 DEBUG Processing 67/668 atomic regions from SNP 19848 to 20448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,611 DEBUG Processing 104/696 atomic regions from SNP 30910 to 31510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,658 DEBUG Processing 565/652 atomic regions from SNP 169436 to 170036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,677 DEBUG Processing 431/715 atomic regions from SNP 129001 to 129601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,738 DEBUG Processing 68/668 atomic regions from SNP 20148 to 20748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,847 DEBUG Processing 105/696 atomic regions from SNP 31210 to 31810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,884 DEBUG Processing 566/652 atomic regions from SNP 169736 to 170336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,928 DEBUG Processing 432/715 atomic regions from SNP 129301 to 129901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,966 DEBUG Processing 69/668 atomic regions from SNP 20448 to 21048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,085 DEBUG Processing 106/696 atomic regions from SNP 31510 to 32110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,109 DEBUG Processing 567/652 atomic regions from SNP 170036 to 170636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,180 DEBUG Processing 433/715 atomic regions from SNP 129601 to 130201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,199 DEBUG Processing 70/668 atomic regions from SNP 20748 to 21348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,324 DEBUG Processing 107/696 atomic regions from SNP 31810 to 32410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,339 DEBUG Processing 568/652 atomic regions from SNP 170336 to 170936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,428 DEBUG Processing 71/668 atomic regions from SNP 21048 to 21648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,432 DEBUG Processing 434/715 atomic regions from SNP 129901 to 130501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,565 DEBUG Processing 108/696 atomic regions from SNP 32110 to 32710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,565 DEBUG Processing 569/652 atomic regions from SNP 170636 to 171236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,653 DEBUG Processing 72/668 atomic regions from SNP 21348 to 21948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,683 DEBUG Processing 435/715 atomic regions from SNP 130201 to 130801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,800 DEBUG Processing 570/652 atomic regions from SNP 170936 to 171536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,810 DEBUG Processing 109/696 atomic regions from SNP 32410 to 33010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,878 DEBUG Processing 73/668 atomic regions from SNP 21648 to 22248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,941 DEBUG Processing 436/715 atomic regions from SNP 130501 to 131101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,026 DEBUG Processing 571/652 atomic regions from SNP 171236 to 171836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,048 DEBUG Processing 110/696 atomic regions from SNP 32710 to 33310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,106 DEBUG Processing 74/668 atomic regions from SNP 21948 to 22548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,187 DEBUG Processing 437/715 atomic regions from SNP 130801 to 131401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,252 DEBUG Processing 572/652 atomic regions from SNP 171536 to 172136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,314 DEBUG Processing 111/696 atomic regions from SNP 33010 to 33610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,333 DEBUG Processing 75/668 atomic regions from SNP 22248 to 22848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,433 DEBUG Processing 438/715 atomic regions from SNP 131101 to 131701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,476 DEBUG Processing 573/652 atomic regions from SNP 171836 to 172436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,560 DEBUG Processing 76/668 atomic regions from SNP 22548 to 23148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,578 DEBUG Processing 112/696 atomic regions from SNP 33310 to 33910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,686 DEBUG Processing 439/715 atomic regions from SNP 131401 to 132001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,708 DEBUG Processing 574/652 atomic regions from SNP 172136 to 172736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,792 DEBUG Processing 77/668 atomic regions from SNP 22848 to 23448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,825 DEBUG Processing 113/696 atomic regions from SNP 33610 to 34210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,936 DEBUG Processing 575/652 atomic regions from SNP 172436 to 173036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,938 DEBUG Processing 440/715 atomic regions from SNP 131701 to 132301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,009 DEBUG Processing 78/668 atomic regions from SNP 23148 to 23748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,059 DEBUG Processing 114/696 atomic regions from SNP 33910 to 34510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,166 DEBUG Processing 576/652 atomic regions from SNP 172736 to 173336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,186 DEBUG Processing 441/715 atomic regions from SNP 132001 to 132601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,228 DEBUG Processing 79/668 atomic regions from SNP 23448 to 24048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,297 DEBUG Processing 115/696 atomic regions from SNP 34210 to 34810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,388 DEBUG Processing 577/652 atomic regions from SNP 173036 to 173636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,429 DEBUG Processing 442/715 atomic regions from SNP 132301 to 132901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,450 DEBUG Processing 80/668 atomic regions from SNP 23748 to 24348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,535 DEBUG Processing 116/696 atomic regions from SNP 34510 to 35110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,615 DEBUG Processing 578/652 atomic regions from SNP 173336 to 173936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,676 DEBUG Processing 81/668 atomic regions from SNP 24048 to 24648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,683 DEBUG Processing 443/715 atomic regions from SNP 132601 to 133201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,775 DEBUG Processing 117/696 atomic regions from SNP 34810 to 35410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,851 DEBUG Processing 579/652 atomic regions from SNP 173636 to 174236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,911 DEBUG Processing 82/668 atomic regions from SNP 24348 to 24948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,951 DEBUG Processing 444/715 atomic regions from SNP 132901 to 133501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,026 DEBUG Processing 118/696 atomic regions from SNP 35110 to 35710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,078 DEBUG Processing 580/652 atomic regions from SNP 173936 to 174536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,145 DEBUG Processing 83/668 atomic regions from SNP 24648 to 25248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,243 DEBUG Processing 445/715 atomic regions from SNP 133201 to 133801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,283 DEBUG Processing 119/696 atomic regions from SNP 35410 to 36010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,314 DEBUG Processing 581/652 atomic regions from SNP 174236 to 174836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,389 DEBUG Processing 84/668 atomic regions from SNP 24948 to 25548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,505 DEBUG Processing 446/715 atomic regions from SNP 133501 to 134101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,527 DEBUG Processing 120/696 atomic regions from SNP 35710 to 36310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,549 DEBUG Processing 582/652 atomic regions from SNP 174536 to 175136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,628 DEBUG Processing 85/668 atomic regions from SNP 25248 to 25848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,766 DEBUG Processing 121/696 atomic regions from SNP 36010 to 36610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,774 DEBUG Processing 447/715 atomic regions from SNP 133801 to 134401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,780 DEBUG Processing 583/652 atomic regions from SNP 174836 to 175436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,857 DEBUG Processing 86/668 atomic regions from SNP 25548 to 26148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,006 DEBUG Processing 122/696 atomic regions from SNP 36310 to 36910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,009 DEBUG Processing 584/652 atomic regions from SNP 175136 to 175736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,029 DEBUG Processing 448/715 atomic regions from SNP 134101 to 134701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,083 DEBUG Processing 87/668 atomic regions from SNP 25848 to 26448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,238 DEBUG Processing 585/652 atomic regions from SNP 175436 to 176036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,241 DEBUG Processing 123/696 atomic regions from SNP 36610 to 37210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,268 DEBUG Processing 449/715 atomic regions from SNP 134401 to 135001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,308 DEBUG Processing 88/668 atomic regions from SNP 26148 to 26748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,469 DEBUG Processing 586/652 atomic regions from SNP 175736 to 176336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,483 DEBUG Processing 124/696 atomic regions from SNP 36910 to 37510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,519 DEBUG Processing 450/715 atomic regions from SNP 134701 to 135301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,538 DEBUG Processing 89/668 atomic regions from SNP 26448 to 27048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,697 DEBUG Processing 587/652 atomic regions from SNP 176036 to 176636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,730 DEBUG Processing 125/696 atomic regions from SNP 37210 to 37810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,768 DEBUG Processing 90/668 atomic regions from SNP 26748 to 27348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,778 DEBUG Processing 451/715 atomic regions from SNP 135001 to 135601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,953 DEBUG Processing 588/652 atomic regions from SNP 176336 to 176936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,994 DEBUG Processing 126/696 atomic regions from SNP 37510 to 38110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,016 DEBUG Processing 91/668 atomic regions from SNP 27048 to 27648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,048 DEBUG Processing 452/715 atomic regions from SNP 135301 to 135901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,187 DEBUG Processing 589/652 atomic regions from SNP 176636 to 177236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,239 DEBUG Processing 127/696 atomic regions from SNP 37810 to 38410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,241 DEBUG Processing 92/668 atomic regions from SNP 27348 to 27948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,300 DEBUG Processing 453/715 atomic regions from SNP 135601 to 136201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,414 DEBUG Processing 590/652 atomic regions from SNP 176936 to 177536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,464 DEBUG Processing 93/668 atomic regions from SNP 27648 to 28248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,480 DEBUG Processing 128/696 atomic regions from SNP 38110 to 38710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,557 DEBUG Processing 454/715 atomic regions from SNP 135901 to 136501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,642 DEBUG Processing 591/652 atomic regions from SNP 177236 to 177836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,688 DEBUG Processing 94/668 atomic regions from SNP 27948 to 28548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,713 DEBUG Processing 129/696 atomic regions from SNP 38410 to 39010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,802 DEBUG Processing 455/715 atomic regions from SNP 136201 to 136801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,872 DEBUG Processing 592/652 atomic regions from SNP 177536 to 178136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,908 DEBUG Processing 95/668 atomic regions from SNP 28248 to 28848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,940 DEBUG Processing 130/696 atomic regions from SNP 38710 to 39310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,042 DEBUG Processing 456/715 atomic regions from SNP 136501 to 137101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,100 DEBUG Processing 593/652 atomic regions from SNP 177836 to 178436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,126 DEBUG Processing 96/668 atomic regions from SNP 28548 to 29148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,162 DEBUG Processing 131/696 atomic regions from SNP 39010 to 39610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,283 DEBUG Processing 457/715 atomic regions from SNP 136801 to 137401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,329 DEBUG Processing 594/652 atomic regions from SNP 178136 to 178736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,345 DEBUG Processing 97/668 atomic regions from SNP 28848 to 29448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,384 DEBUG Processing 132/696 atomic regions from SNP 39310 to 39910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,530 DEBUG Processing 458/715 atomic regions from SNP 137101 to 137701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,557 DEBUG Processing 595/652 atomic regions from SNP 178436 to 179036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,569 DEBUG Processing 98/668 atomic regions from SNP 29148 to 29748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,612 DEBUG Processing 133/696 atomic regions from SNP 39610 to 40210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,776 DEBUG Processing 459/715 atomic regions from SNP 137401 to 138001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,789 DEBUG Processing 596/652 atomic regions from SNP 178736 to 179336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,794 DEBUG Processing 99/668 atomic regions from SNP 29448 to 30048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,843 DEBUG Processing 134/696 atomic regions from SNP 39910 to 40510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,020 DEBUG Processing 460/715 atomic regions from SNP 137701 to 138301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,023 DEBUG Processing 597/652 atomic regions from SNP 179036 to 179636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,036 DEBUG Processing 100/668 atomic regions from SNP 29748 to 30348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,079 DEBUG Processing 135/696 atomic regions from SNP 40210 to 40810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,261 DEBUG Processing 598/652 atomic regions from SNP 179336 to 179936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,275 DEBUG Processing 461/715 atomic regions from SNP 138001 to 138601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,310 DEBUG Processing 101/668 atomic regions from SNP 30048 to 30648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,322 DEBUG Processing 136/696 atomic regions from SNP 40510 to 41110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,495 DEBUG Processing 599/652 atomic regions from SNP 179636 to 180236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,519 DEBUG Processing 462/715 atomic regions from SNP 138301 to 138901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,544 DEBUG Processing 102/668 atomic regions from SNP 30348 to 30948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,550 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:54:00,556 DEBUG Processing 137/696 atomic regions from SNP 40810 to 41410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,724 DEBUG Processing 600/652 atomic regions from SNP 179936 to 180536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,770 DEBUG Processing 463/715 atomic regions from SNP 138601 to 139201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,772 DEBUG Processing 103/668 atomic regions from SNP 30648 to 31248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,797 DEBUG Processing 138/696 atomic regions from SNP 41110 to 41710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,948 DEBUG Processing 601/652 atomic regions from SNP 180236 to 180836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,026 DEBUG Processing 464/715 atomic regions from SNP 138901 to 139501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,033 DEBUG Processing 104/668 atomic regions from SNP 30948 to 31548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,046 DEBUG Processing 139/696 atomic regions from SNP 41410 to 42010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,169 DEBUG Processing 602/652 atomic regions from SNP 180536 to 181136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,283 DEBUG Processing 465/715 atomic regions from SNP 139201 to 139801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,295 DEBUG Processing 140/696 atomic regions from SNP 41710 to 42310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,298 DEBUG Processing 105/668 atomic regions from SNP 31248 to 31848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,393 DEBUG Processing 603/652 atomic regions from SNP 180836 to 181436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,534 DEBUG Processing 466/715 atomic regions from SNP 139501 to 140101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,540 DEBUG Processing 141/696 atomic regions from SNP 42010 to 42610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,553 DEBUG Processing 106/668 atomic regions from SNP 31548 to 32148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,616 DEBUG Processing 604/652 atomic regions from SNP 181136 to 181736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,780 DEBUG Processing 107/668 atomic regions from SNP 31848 to 32448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,782 DEBUG Processing 142/696 atomic regions from SNP 42310 to 42910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,784 DEBUG Processing 467/715 atomic regions from SNP 139801 to 140401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,852 DEBUG Processing 605/652 atomic regions from SNP 181436 to 182036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,003 DEBUG Processing 108/668 atomic regions from SNP 32148 to 32748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,021 DEBUG Processing 143/696 atomic regions from SNP 42610 to 43210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,037 DEBUG Processing 468/715 atomic regions from SNP 140101 to 140701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,086 DEBUG Processing 606/652 atomic regions from SNP 181736 to 182336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,223 DEBUG Processing 109/668 atomic regions from SNP 32448 to 33048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,255 DEBUG Processing 144/696 atomic regions from SNP 42910 to 43510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,280 DEBUG Processing 469/715 atomic regions from SNP 140401 to 141001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,321 DEBUG Processing 607/652 atomic regions from SNP 182036 to 182636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,438 DEBUG Processing 110/668 atomic regions from SNP 32748 to 33348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,485 DEBUG Processing 145/696 atomic regions from SNP 43210 to 43810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,525 DEBUG Processing 470/715 atomic regions from SNP 140701 to 141301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,553 DEBUG Processing 608/652 atomic regions from SNP 182336 to 182936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,670 DEBUG Processing 111/668 atomic regions from SNP 33048 to 33648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,714 DEBUG Processing 146/696 atomic regions from SNP 43510 to 44110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,774 DEBUG Processing 471/715 atomic regions from SNP 141001 to 141601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,785 DEBUG Processing 609/652 atomic regions from SNP 182636 to 183236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,921 DEBUG Processing 112/668 atomic regions from SNP 33348 to 33948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,939 DEBUG Processing 147/696 atomic regions from SNP 43810 to 44410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,011 DEBUG Processing 610/652 atomic regions from SNP 182936 to 183536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,017 DEBUG Processing 472/715 atomic regions from SNP 141301 to 141901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,158 DEBUG Processing 148/696 atomic regions from SNP 44110 to 44710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,169 DEBUG Processing 113/668 atomic regions from SNP 33648 to 34248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,239 DEBUG Processing 611/652 atomic regions from SNP 183236 to 183836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,262 DEBUG Processing 473/715 atomic regions from SNP 141601 to 142201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,393 DEBUG Processing 149/696 atomic regions from SNP 44410 to 45010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,430 DEBUG Processing 114/668 atomic regions from SNP 33948 to 34548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,474 DEBUG Processing 612/652 atomic regions from SNP 183536 to 184136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,522 DEBUG Processing 474/715 atomic regions from SNP 141901 to 142501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,632 DEBUG Processing 150/696 atomic regions from SNP 44710 to 45310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,666 DEBUG Processing 115/668 atomic regions from SNP 34248 to 34848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,706 DEBUG Processing 613/652 atomic regions from SNP 183836 to 184436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,770 DEBUG Processing 475/715 atomic regions from SNP 142201 to 142801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,863 DEBUG Processing 151/696 atomic regions from SNP 45010 to 45610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,892 DEBUG Processing 116/668 atomic regions from SNP 34548 to 35148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,937 DEBUG Processing 614/652 atomic regions from SNP 184136 to 184736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,015 DEBUG Processing 476/715 atomic regions from SNP 142501 to 143101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,103 DEBUG Processing 152/696 atomic regions from SNP 45310 to 45910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,132 DEBUG Processing 117/668 atomic regions from SNP 34848 to 35448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,170 DEBUG Processing 615/652 atomic regions from SNP 184436 to 185036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,259 DEBUG Processing 477/715 atomic regions from SNP 142801 to 143401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,339 DEBUG Processing 153/696 atomic regions from SNP 45610 to 46210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,372 DEBUG Processing 118/668 atomic regions from SNP 35148 to 35748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,408 DEBUG Processing 616/652 atomic regions from SNP 184736 to 185336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,503 DEBUG Processing 478/715 atomic regions from SNP 143101 to 143701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,584 DEBUG Processing 154/696 atomic regions from SNP 45910 to 46510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,633 DEBUG Processing 119/668 atomic regions from SNP 35448 to 36048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,647 DEBUG Processing 617/652 atomic regions from SNP 185036 to 185636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,755 DEBUG Processing 479/715 atomic regions from SNP 143401 to 144001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,827 DEBUG Processing 155/696 atomic regions from SNP 46210 to 46810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,887 DEBUG Processing 618/652 atomic regions from SNP 185336 to 185936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,891 DEBUG Processing 120/668 atomic regions from SNP 35748 to 36348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,999 DEBUG Processing 480/715 atomic regions from SNP 143701 to 144301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,063 DEBUG Processing 156/696 atomic regions from SNP 46510 to 47110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,121 DEBUG Processing 619/652 atomic regions from SNP 185636 to 186236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,135 DEBUG Processing 121/668 atomic regions from SNP 36048 to 36648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,242 DEBUG Processing 481/715 atomic regions from SNP 144001 to 144601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,297 DEBUG Processing 157/696 atomic regions from SNP 46810 to 47410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,369 DEBUG Processing 620/652 atomic regions from SNP 185936 to 186536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,376 DEBUG Processing 122/668 atomic regions from SNP 36348 to 36948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,490 DEBUG Processing 482/715 atomic regions from SNP 144301 to 144901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,536 DEBUG Processing 158/696 atomic regions from SNP 47110 to 47710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,606 DEBUG Processing 621/652 atomic regions from SNP 186236 to 186836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,611 DEBUG Processing 123/668 atomic regions from SNP 36648 to 37248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,741 DEBUG Processing 483/715 atomic regions from SNP 144601 to 145201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,780 DEBUG Processing 159/696 atomic regions from SNP 47410 to 48010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,848 DEBUG Processing 622/652 atomic regions from SNP 186536 to 187136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,862 DEBUG Processing 124/668 atomic regions from SNP 36948 to 37548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,991 DEBUG Processing 484/715 atomic regions from SNP 144901 to 145501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,031 DEBUG Processing 160/696 atomic regions from SNP 47710 to 48310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,093 DEBUG Processing 623/652 atomic regions from SNP 186836 to 187436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,105 DEBUG Processing 125/668 atomic regions from SNP 37248 to 37848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,244 DEBUG Processing 485/715 atomic regions from SNP 145201 to 145801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,301 DEBUG Processing 161/696 atomic regions from SNP 48010 to 48610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,331 DEBUG Processing 624/652 atomic regions from SNP 187136 to 187736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,344 DEBUG Processing 126/668 atomic regions from SNP 37548 to 38148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,498 DEBUG Processing 486/715 atomic regions from SNP 145501 to 146101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,551 DEBUG Processing 162/696 atomic regions from SNP 48310 to 48910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,572 DEBUG Processing 625/652 atomic regions from SNP 187436 to 188036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,581 DEBUG Processing 127/668 atomic regions from SNP 37848 to 38448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,755 DEBUG Processing 487/715 atomic regions from SNP 145801 to 146401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,811 DEBUG Processing 626/652 atomic regions from SNP 187736 to 188336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,819 DEBUG Processing 128/668 atomic regions from SNP 38148 to 38748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,824 DEBUG Processing 163/696 atomic regions from SNP 48610 to 49210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,009 DEBUG Processing 488/715 atomic regions from SNP 146101 to 146701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,046 DEBUG Processing 627/652 atomic regions from SNP 188036 to 188636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,049 DEBUG Processing 129/668 atomic regions from SNP 38448 to 39048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,091 DEBUG Processing 164/696 atomic regions from SNP 48910 to 49510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,252 DEBUG Processing 489/715 atomic regions from SNP 146401 to 147001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,279 DEBUG Processing 130/668 atomic regions from SNP 38748 to 39348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,280 DEBUG Processing 628/652 atomic regions from SNP 188336 to 188936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,325 DEBUG Processing 165/696 atomic regions from SNP 49210 to 49810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,502 DEBUG Processing 490/715 atomic regions from SNP 146701 to 147301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,512 DEBUG Processing 131/668 atomic regions from SNP 39048 to 39648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,518 DEBUG Processing 629/652 atomic regions from SNP 188636 to 189236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,569 DEBUG Processing 166/696 atomic regions from SNP 49510 to 50110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,743 DEBUG Processing 132/668 atomic regions from SNP 39348 to 39948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,750 DEBUG Processing 491/715 atomic regions from SNP 147001 to 147601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,751 DEBUG Processing 630/652 atomic regions from SNP 188936 to 189536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,809 DEBUG Processing 167/696 atomic regions from SNP 49810 to 50410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,975 DEBUG Processing 133/668 atomic regions from SNP 39648 to 40248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,987 DEBUG Processing 631/652 atomic regions from SNP 189236 to 189836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,008 DEBUG Processing 492/715 atomic regions from SNP 147301 to 147901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,051 DEBUG Processing 168/696 atomic regions from SNP 50110 to 50710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,201 DEBUG Processing 134/668 atomic regions from SNP 39948 to 40548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,218 DEBUG Processing 632/652 atomic regions from SNP 189536 to 190136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,252 DEBUG Processing 493/715 atomic regions from SNP 147601 to 148201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,287 DEBUG Processing 169/696 atomic regions from SNP 50410 to 51010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,425 DEBUG Processing 135/668 atomic regions from SNP 40248 to 40848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,447 DEBUG Processing 633/652 atomic regions from SNP 189836 to 190436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,493 DEBUG Processing 494/715 atomic regions from SNP 147901 to 148501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,517 DEBUG Processing 170/696 atomic regions from SNP 50710 to 51310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,648 DEBUG Processing 136/668 atomic regions from SNP 40548 to 41148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,690 DEBUG Processing 634/652 atomic regions from SNP 190136 to 190736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,727 DEBUG Processing 495/715 atomic regions from SNP 148201 to 148801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,748 DEBUG Processing 171/696 atomic regions from SNP 51010 to 51610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,865 DEBUG Processing 137/668 atomic regions from SNP 40848 to 41448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,942 DEBUG Processing 635/652 atomic regions from SNP 190436 to 191036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,961 DEBUG Processing 496/715 atomic regions from SNP 148501 to 149101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,980 DEBUG Processing 172/696 atomic regions from SNP 51310 to 51910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,084 DEBUG Processing 138/668 atomic regions from SNP 41148 to 41748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,175 DEBUG Processing 636/652 atomic regions from SNP 190736 to 191336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,197 DEBUG Processing 497/715 atomic regions from SNP 148801 to 149401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,210 DEBUG Processing 173/696 atomic regions from SNP 51610 to 52210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,307 DEBUG Processing 139/668 atomic regions from SNP 41448 to 42048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,434 DEBUG Processing 637/652 atomic regions from SNP 191036 to 191636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,436 DEBUG Processing 498/715 atomic regions from SNP 149101 to 149701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,442 DEBUG Processing 174/696 atomic regions from SNP 51910 to 52510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,530 DEBUG Processing 140/668 atomic regions from SNP 41748 to 42348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,681 DEBUG Processing 175/696 atomic regions from SNP 52210 to 52810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,681 DEBUG Processing 499/715 atomic regions from SNP 149401 to 150001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,689 DEBUG Processing 638/652 atomic regions from SNP 191336 to 191936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,751 DEBUG Processing 141/668 atomic regions from SNP 42048 to 42648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,919 DEBUG Processing 176/696 atomic regions from SNP 52510 to 53110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,926 DEBUG Processing 500/715 atomic regions from SNP 149701 to 150301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,943 DEBUG Processing 639/652 atomic regions from SNP 191636 to 192236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,977 DEBUG Processing 142/668 atomic regions from SNP 42348 to 42948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,155 DEBUG Processing 177/696 atomic regions from SNP 52810 to 53410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,169 DEBUG Processing 501/715 atomic regions from SNP 150001 to 150601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,186 DEBUG Processing 640/652 atomic regions from SNP 191936 to 192536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,204 DEBUG Processing 143/668 atomic regions from SNP 42648 to 43248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,387 DEBUG Processing 178/696 atomic regions from SNP 53110 to 53710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,412 DEBUG Processing 502/715 atomic regions from SNP 150301 to 150901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,417 DEBUG Processing 641/652 atomic regions from SNP 192236 to 192836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,430 DEBUG Processing 144/668 atomic regions from SNP 42948 to 43548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,625 DEBUG Processing 179/696 atomic regions from SNP 53410 to 54010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,654 DEBUG Processing 642/652 atomic regions from SNP 192536 to 193136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,656 DEBUG Processing 503/715 atomic regions from SNP 150601 to 151201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,660 DEBUG Processing 145/668 atomic regions from SNP 43248 to 43848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,862 DEBUG Processing 180/696 atomic regions from SNP 53710 to 54310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,889 DEBUG Processing 643/652 atomic regions from SNP 192836 to 193436 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,890 DEBUG Processing 146/668 atomic regions from SNP 43548 to 44148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,898 DEBUG Processing 504/715 atomic regions from SNP 150901 to 151501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,095 DEBUG Processing 181/696 atomic regions from SNP 54010 to 54610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,117 DEBUG Processing 644/652 atomic regions from SNP 193136 to 193736 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,118 DEBUG Processing 147/668 atomic regions from SNP 43848 to 44448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,138 DEBUG Processing 505/715 atomic regions from SNP 151201 to 151801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,326 DEBUG Processing 182/696 atomic regions from SNP 54310 to 54910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,342 DEBUG Processing 645/652 atomic regions from SNP 193436 to 194036 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,342 DEBUG Processing 148/668 atomic regions from SNP 44148 to 44748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,376 DEBUG Processing 506/715 atomic regions from SNP 151501 to 152101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,558 DEBUG Processing 183/696 atomic regions from SNP 54610 to 55210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,562 DEBUG Processing 149/668 atomic regions from SNP 44448 to 45048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,564 DEBUG Processing 646/652 atomic regions from SNP 193736 to 194336 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,614 DEBUG Processing 507/715 atomic regions from SNP 151801 to 152401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,785 DEBUG Processing 647/652 atomic regions from SNP 194036 to 194636 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,790 DEBUG Processing 184/696 atomic regions from SNP 54910 to 55510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,813 DEBUG Processing 150/668 atomic regions from SNP 44748 to 45348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,847 DEBUG Processing 508/715 atomic regions from SNP 152101 to 152701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,009 DEBUG Processing 648/652 atomic regions from SNP 194336 to 194936 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,025 DEBUG Processing 185/696 atomic regions from SNP 55210 to 55810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,044 DEBUG Processing 151/668 atomic regions from SNP 45048 to 45648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,088 DEBUG Processing 509/715 atomic regions from SNP 152401 to 153001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,247 DEBUG Processing 649/652 atomic regions from SNP 194636 to 195236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,259 DEBUG Processing 186/696 atomic regions from SNP 55510 to 56110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,272 DEBUG Processing 152/668 atomic regions from SNP 45348 to 45948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,328 DEBUG Processing 510/715 atomic regions from SNP 152701 to 153301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,478 DEBUG Processing 650/652 atomic regions from SNP 194936 to 195536 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,490 DEBUG Processing 187/696 atomic regions from SNP 55810 to 56410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,493 DEBUG Processing 153/668 atomic regions from SNP 45648 to 46248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,562 DEBUG Processing 511/715 atomic regions from SNP 153001 to 153601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,709 DEBUG Processing 651/652 atomic regions from SNP 195236 to 195836 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,718 DEBUG Processing 188/696 atomic regions from SNP 56110 to 56710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,719 DEBUG Processing 154/668 atomic regions from SNP 45948 to 46548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,802 DEBUG Processing 512/715 atomic regions from SNP 153301 to 153901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,934 DEBUG Processing 652/652 atomic regions from SNP 195536 to 196136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,937 DEBUG Processing 155/668 atomic regions from SNP 46248 to 46848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,939 DEBUG Processing 189/696 atomic regions from SNP 56410 to 57010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,040 DEBUG Processing 513/715 atomic regions from SNP 153601 to 154201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,065 DEBUG Unique SNPs positions in subchromosome 2: 196137 2025-01-31 09:54:13,156 DEBUG Processing 190/696 atomic regions from SNP 56710 to 57310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,178 DEBUG Processing 156/668 atomic regions from SNP 46548 to 47148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,285 DEBUG Processing 514/715 atomic regions from SNP 153901 to 154501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,374 DEBUG Processing 191/696 atomic regions from SNP 57010 to 57610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,399 DEBUG Processing 157/668 atomic regions from SNP 46848 to 47448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,527 DEBUG Processing 515/715 atomic regions from SNP 154201 to 154801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,596 DEBUG Processing 192/696 atomic regions from SNP 57310 to 57910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,616 DEBUG Processing 158/668 atomic regions from SNP 47148 to 47748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,774 DEBUG Processing 516/715 atomic regions from SNP 154501 to 155101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,831 DEBUG Processing 193/696 atomic regions from SNP 57610 to 58210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,843 DEBUG Processing 159/668 atomic regions from SNP 47448 to 48048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,009 DEBUG Processing 517/715 atomic regions from SNP 154801 to 155401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,062 DEBUG Processing 194/696 atomic regions from SNP 57910 to 58510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,066 DEBUG Processing 160/668 atomic regions from SNP 47748 to 48348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,243 DEBUG Processing 518/715 atomic regions from SNP 155101 to 155701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,296 DEBUG Processing 195/696 atomic regions from SNP 58210 to 58810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,296 DEBUG Processing 161/668 atomic regions from SNP 48048 to 48648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,476 DEBUG Processing 519/715 atomic regions from SNP 155401 to 156001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,525 DEBUG Processing 162/668 atomic regions from SNP 48348 to 48948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,527 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:54:14,528 DEBUG chr12: Signal quantile: 0.991. signal threshold: 10. Best RMSEA: 0.015 2025-01-31 09:54:14,536 DEBUG Processing 196/696 atomic regions from SNP 58510 to 59110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,707 DEBUG Processing 520/715 atomic regions from SNP 155701 to 156301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,752 DEBUG Processing 163/668 atomic regions from SNP 48648 to 49248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,772 DEBUG Processing 197/696 atomic regions from SNP 58810 to 59410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,935 DEBUG Processing 521/715 atomic regions from SNP 156001 to 156601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,978 DEBUG Processing 164/668 atomic regions from SNP 48948 to 49548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,009 DEBUG Processing 198/696 atomic regions from SNP 59110 to 59710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,169 DEBUG Processing 522/715 atomic regions from SNP 156301 to 156901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,198 DEBUG Processing 165/668 atomic regions from SNP 49248 to 49848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,247 DEBUG Processing 199/696 atomic regions from SNP 59410 to 60010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,402 DEBUG Processing 523/715 atomic regions from SNP 156601 to 157201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,420 DEBUG Processing 166/668 atomic regions from SNP 49548 to 50148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,489 DEBUG Processing 200/696 atomic regions from SNP 59710 to 60310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,636 DEBUG Processing 524/715 atomic regions from SNP 156901 to 157501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,644 DEBUG Processing 167/668 atomic regions from SNP 49848 to 50448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,724 DEBUG Processing 201/696 atomic regions from SNP 60010 to 60610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,868 DEBUG Processing 525/715 atomic regions from SNP 157201 to 157801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,870 DEBUG Processing 168/668 atomic regions from SNP 50148 to 50748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,967 DEBUG Processing 202/696 atomic regions from SNP 60310 to 60910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,083 DEBUG Processing 169/668 atomic regions from SNP 50448 to 51048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,098 DEBUG Processing 526/715 atomic regions from SNP 157501 to 158101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,203 DEBUG Processing 203/696 atomic regions from SNP 60610 to 61210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,300 DEBUG Processing 170/668 atomic regions from SNP 50748 to 51348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,331 DEBUG Processing 527/715 atomic regions from SNP 157801 to 158401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,434 DEBUG Processing 204/696 atomic regions from SNP 60910 to 61510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,520 DEBUG Processing 171/668 atomic regions from SNP 51048 to 51648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,572 DEBUG Processing 528/715 atomic regions from SNP 158101 to 158701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,662 DEBUG Processing 205/696 atomic regions from SNP 61210 to 61810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,744 DEBUG Processing 172/668 atomic regions from SNP 51348 to 51948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,813 DEBUG Processing 529/715 atomic regions from SNP 158401 to 159001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,857 DEBUG chr12 total SNP count: 195721 2025-01-31 09:54:16,857 DEBUG chr12 length: 120129022 2025-01-31 09:54:16,857 DEBUG ----------------------------------------- 2025-01-31 09:54:16,858 INFO Processing SNPs in chr12 2025-01-31 09:54:16,894 DEBUG Processing 206/696 atomic regions from SNP 61510 to 62110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,988 DEBUG Processing 173/668 atomic regions from SNP 51648 to 52248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,053 DEBUG Processing 530/715 atomic regions from SNP 158701 to 159301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,070 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 195721)] 2025-01-31 09:54:17,116 DEBUG Processing 207/696 atomic regions from SNP 61810 to 62410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,214 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:17,240 DEBUG Processing 174/668 atomic regions from SNP 51948 to 52548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,298 DEBUG Processing 531/715 atomic regions from SNP 159001 to 159601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,348 DEBUG Processing 208/696 atomic regions from SNP 62110 to 62710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,488 DEBUG Processing 175/668 atomic regions from SNP 52248 to 52848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,538 DEBUG Processing 532/715 atomic regions from SNP 159301 to 159901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,577 DEBUG Processing 209/696 atomic regions from SNP 62410 to 63010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,706 DEBUG Processing 176/668 atomic regions from SNP 52548 to 53148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,773 DEBUG Processing 533/715 atomic regions from SNP 159601 to 160201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,806 DEBUG Processing 210/696 atomic regions from SNP 62710 to 63310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,926 DEBUG Processing 177/668 atomic regions from SNP 52848 to 53448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,016 DEBUG Processing 534/715 atomic regions from SNP 159901 to 160501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,043 DEBUG Processing 211/696 atomic regions from SNP 63010 to 63610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,135 DEBUG Processing 178/668 atomic regions from SNP 53148 to 53748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,252 DEBUG Processing 535/715 atomic regions from SNP 160201 to 160801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,269 DEBUG Processing 212/696 atomic regions from SNP 63310 to 63910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,352 DEBUG Processing 179/668 atomic regions from SNP 53448 to 54048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,495 DEBUG Processing 213/696 atomic regions from SNP 63610 to 64210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,497 DEBUG Processing 536/715 atomic regions from SNP 160501 to 161101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,572 DEBUG Processing 180/668 atomic regions from SNP 53748 to 54348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,718 DEBUG Processing 214/696 atomic regions from SNP 63910 to 64510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,730 DEBUG Processing 537/715 atomic regions from SNP 160801 to 161401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,792 DEBUG Processing 181/668 atomic regions from SNP 54048 to 54648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,941 DEBUG Processing 215/696 atomic regions from SNP 64210 to 64810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,964 DEBUG Processing 538/715 atomic regions from SNP 161101 to 161701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,013 DEBUG Processing 182/668 atomic regions from SNP 54348 to 54948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,157 DEBUG Processing 216/696 atomic regions from SNP 64510 to 65110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,194 DEBUG Processing 539/715 atomic regions from SNP 161401 to 162001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,241 DEBUG Processing 183/668 atomic regions from SNP 54648 to 55248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,373 DEBUG Processing 217/696 atomic regions from SNP 64810 to 65410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,424 DEBUG Processing 540/715 atomic regions from SNP 161701 to 162301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,463 DEBUG Processing 184/668 atomic regions from SNP 54948 to 55548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,591 DEBUG Processing 218/696 atomic regions from SNP 65110 to 65710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,662 DEBUG Processing 541/715 atomic regions from SNP 162001 to 162601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,695 DEBUG Processing 185/668 atomic regions from SNP 55248 to 55848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,806 DEBUG Processing 219/696 atomic regions from SNP 65410 to 66010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,924 DEBUG Processing 542/715 atomic regions from SNP 162301 to 162901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,940 DEBUG Processing 186/668 atomic regions from SNP 55548 to 56148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,040 DEBUG Processing 220/696 atomic regions from SNP 65710 to 66310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,185 DEBUG Processing 187/668 atomic regions from SNP 55848 to 56448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,195 DEBUG Processing 543/715 atomic regions from SNP 162601 to 163201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,279 DEBUG Processing 221/696 atomic regions from SNP 66010 to 66610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,402 DEBUG Processing 188/668 atomic regions from SNP 56148 to 56748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,430 DEBUG Processing 544/715 atomic regions from SNP 162901 to 163501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,505 DEBUG Processing 222/696 atomic regions from SNP 66310 to 66910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,615 DEBUG Processing 189/668 atomic regions from SNP 56448 to 57048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,668 DEBUG Processing 545/715 atomic regions from SNP 163201 to 163801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,728 DEBUG Processing 223/696 atomic regions from SNP 66610 to 67210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,827 DEBUG Processing 190/668 atomic regions from SNP 56748 to 57348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,910 DEBUG Processing 546/715 atomic regions from SNP 163501 to 164101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,947 DEBUG Processing 224/696 atomic regions from SNP 66910 to 67510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,037 DEBUG Processing 191/668 atomic regions from SNP 57048 to 57648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,140 DEBUG Processing 547/715 atomic regions from SNP 163801 to 164401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,164 DEBUG Processing 225/696 atomic regions from SNP 67210 to 67810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,249 DEBUG Processing 192/668 atomic regions from SNP 57348 to 57948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,369 DEBUG Processing 548/715 atomic regions from SNP 164101 to 164701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,385 DEBUG Processing 226/696 atomic regions from SNP 67510 to 68110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,459 DEBUG Processing 193/668 atomic regions from SNP 57648 to 58248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,609 DEBUG Processing 227/696 atomic regions from SNP 67810 to 68410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,621 DEBUG Processing 549/715 atomic regions from SNP 164401 to 165001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,674 DEBUG Processing 194/668 atomic regions from SNP 57948 to 58548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,722 DEBUG Subchromosome time: 187.63135623186827, subchromosome SNPs: 196137 2025-01-31 09:54:21,723 DEBUG Estimated BADs: [0.12, 0.60, 1.19, 5.96, 1.19, 4.77, 2.39, 1.19, 0.30, 2.39, 0.60, 2.39, 8.35, 1.19, 5.96, 2.39, 0.60, 2.39, 0.24, 1.19, 0.24, 0.60, 0.24, 0.60, 3.58, 1.19] SNP counts: [131, 11375, 9416, 4085, 13972, 3980, 6029, 3596, 5423, 961, 2470, 11679, 847, 2119, 2387, 27887, 2700, 12899, 9590, 2705, 16503, 15888, 10799, 12803, 1328, 4696] SNP IDs counts: [131, 11375, 9416, 4085, 13972, 3980, 6029, 3596, 5423, 961, 2470, 11679, 847, 2119, 2387, 27887, 2700, 12899, 9590, 2705, 16503, 15888, 10799, 12803, 1328, 4696] Critical gap: 627515bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.04Mbp], 5.13Mbp[0.71Mbp], 13.94Mbp, 19.70Mbp, 21.86Mbp, 29.86Mbp, 31.95Mbp, 35.18Mbp, 37.26Mbp, 40.54Mbp, 41.12Mbp, 45.31Mbp, 51.98Mbp, 52.43Mbp, 54.36Mbp, 55.63Mbp, 71.23Mbp, 72.79Mbp, 79.89Mbp, 86.15Mbp, 87.64Mbp, 97.92Mbp, 107.15Mbp, 113.92Mbp, 121.26Mbp, 121.95Mbp, 124.90Mbp] 2025-01-31 09:54:21,723 DEBUG chr14 time: 187.63198102638125 s 2025-01-31 09:54:21,835 DEBUG Processing 228/696 atomic regions from SNP 68110 to 68710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,849 DEBUG chr14: Fitting background model for 26 segments 2025-01-31 09:54:21,867 DEBUG Processing 550/715 atomic regions from SNP 164701 to 165301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,900 DEBUG Processing 195/668 atomic regions from SNP 58248 to 58848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,070 DEBUG Processing 229/696 atomic regions from SNP 68410 to 69010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,100 DEBUG Processing 551/715 atomic regions from SNP 165001 to 165601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,161 DEBUG Processing 196/668 atomic regions from SNP 58548 to 59148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,291 DEBUG Processing 230/696 atomic regions from SNP 68710 to 69310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,300 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:54:22,330 DEBUG Processing 552/715 atomic regions from SNP 165301 to 165901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,417 DEBUG Processing 197/668 atomic regions from SNP 58848 to 59448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,515 DEBUG Processing 231/696 atomic regions from SNP 69010 to 69610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,570 DEBUG Processing 553/715 atomic regions from SNP 165601 to 166201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,649 DEBUG Processing 198/668 atomic regions from SNP 59148 to 59748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,736 DEBUG Processing 232/696 atomic regions from SNP 69310 to 69910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,809 DEBUG Processing 554/715 atomic regions from SNP 165901 to 166501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,878 DEBUG Processing 199/668 atomic regions from SNP 59448 to 60048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,953 DEBUG Processing 233/696 atomic regions from SNP 69610 to 70210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,044 DEBUG Processing 555/715 atomic regions from SNP 166201 to 166801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,114 DEBUG Processing 200/668 atomic regions from SNP 59748 to 60348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,171 DEBUG Processing 234/696 atomic regions from SNP 69910 to 70510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,273 DEBUG Processing 556/715 atomic regions from SNP 166501 to 167101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,373 DEBUG Processing 201/668 atomic regions from SNP 60048 to 60648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,390 DEBUG Processing 235/696 atomic regions from SNP 70210 to 70810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,496 DEBUG Processing 557/715 atomic regions from SNP 166801 to 167401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,608 DEBUG Processing 236/696 atomic regions from SNP 70510 to 71110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,610 DEBUG Processing 202/668 atomic regions from SNP 60348 to 60948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,720 DEBUG Processing 558/715 atomic regions from SNP 167101 to 167701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,830 DEBUG Processing 237/696 atomic regions from SNP 70810 to 71410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,839 DEBUG Processing 203/668 atomic regions from SNP 60648 to 61248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,945 DEBUG Processing 559/715 atomic regions from SNP 167401 to 168001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,057 DEBUG Processing 238/696 atomic regions from SNP 71110 to 71710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,071 DEBUG Processing 204/668 atomic regions from SNP 60948 to 61548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,172 DEBUG Processing 560/715 atomic regions from SNP 167701 to 168301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,285 DEBUG Processing 239/696 atomic regions from SNP 71410 to 72010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,302 DEBUG Processing 205/668 atomic regions from SNP 61248 to 61848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,392 DEBUG Processing 561/715 atomic regions from SNP 168001 to 168601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,511 DEBUG Processing 240/696 atomic regions from SNP 71710 to 72310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,533 DEBUG Processing 206/668 atomic regions from SNP 61548 to 62148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,616 DEBUG Processing 562/715 atomic regions from SNP 168301 to 168901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,735 DEBUG Processing 241/696 atomic regions from SNP 72010 to 72610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,762 DEBUG Processing 207/668 atomic regions from SNP 61848 to 62448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,840 DEBUG Processing 563/715 atomic regions from SNP 168601 to 169201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,954 DEBUG Processing 242/696 atomic regions from SNP 72310 to 72910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,992 DEBUG Processing 208/668 atomic regions from SNP 62148 to 62748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,077 DEBUG Processing 564/715 atomic regions from SNP 168901 to 169501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,176 DEBUG Processing 243/696 atomic regions from SNP 72610 to 73210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,225 DEBUG Processing 209/668 atomic regions from SNP 62448 to 63048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,314 DEBUG Processing 565/715 atomic regions from SNP 169201 to 169801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,396 DEBUG Processing 244/696 atomic regions from SNP 72910 to 73510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,455 DEBUG Processing 210/668 atomic regions from SNP 62748 to 63348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,552 DEBUG Processing 566/715 atomic regions from SNP 169501 to 170101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,618 DEBUG Processing 245/696 atomic regions from SNP 73210 to 73810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,682 DEBUG Processing 211/668 atomic regions from SNP 63048 to 63648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,793 DEBUG Processing 567/715 atomic regions from SNP 169801 to 170401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,841 DEBUG Processing 246/696 atomic regions from SNP 73510 to 74110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,906 DEBUG Processing 212/668 atomic regions from SNP 63348 to 63948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,027 DEBUG Processing 568/715 atomic regions from SNP 170101 to 170701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,073 DEBUG Processing 247/696 atomic regions from SNP 73810 to 74410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,131 DEBUG Processing 213/668 atomic regions from SNP 63648 to 64248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,256 DEBUG Processing 569/715 atomic regions from SNP 170401 to 171001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,303 DEBUG Processing 248/696 atomic regions from SNP 74110 to 74710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,362 DEBUG Processing 214/668 atomic regions from SNP 63948 to 64548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,484 DEBUG Processing 570/715 atomic regions from SNP 170701 to 171301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,529 DEBUG Processing 249/696 atomic regions from SNP 74410 to 75010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,617 DEBUG Processing 215/668 atomic regions from SNP 64248 to 64848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,713 DEBUG Processing 571/715 atomic regions from SNP 171001 to 171601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,752 DEBUG Processing 250/696 atomic regions from SNP 74710 to 75310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,861 DEBUG Processing 216/668 atomic regions from SNP 64548 to 65148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,957 DEBUG Processing 572/715 atomic regions from SNP 171301 to 171901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,980 DEBUG Processing 251/696 atomic regions from SNP 75010 to 75610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,097 DEBUG Processing 217/668 atomic regions from SNP 64848 to 65448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,200 DEBUG Processing 252/696 atomic regions from SNP 75310 to 75910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,204 DEBUG Processing 573/715 atomic regions from SNP 171601 to 172201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,324 DEBUG Processing 218/668 atomic regions from SNP 65148 to 65748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,423 DEBUG Processing 253/696 atomic regions from SNP 75610 to 76210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,431 DEBUG Processing 574/715 atomic regions from SNP 171901 to 172501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,547 DEBUG Processing 219/668 atomic regions from SNP 65448 to 66048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,650 DEBUG Processing 254/696 atomic regions from SNP 75910 to 76510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,666 DEBUG Processing 575/715 atomic regions from SNP 172201 to 172801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,773 DEBUG Processing 220/668 atomic regions from SNP 65748 to 66348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,882 DEBUG Processing 255/696 atomic regions from SNP 76210 to 76810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,910 DEBUG Processing 576/715 atomic regions from SNP 172501 to 173101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,005 DEBUG Processing 221/668 atomic regions from SNP 66048 to 66648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,122 DEBUG Processing 256/696 atomic regions from SNP 76510 to 77110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,158 DEBUG Processing 577/715 atomic regions from SNP 172801 to 173401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,232 DEBUG Processing 222/668 atomic regions from SNP 66348 to 66948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,369 DEBUG Processing 257/696 atomic regions from SNP 76810 to 77410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,397 DEBUG Processing 578/715 atomic regions from SNP 173101 to 173701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,456 DEBUG Processing 223/668 atomic regions from SNP 66648 to 67248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,629 DEBUG Processing 258/696 atomic regions from SNP 77110 to 77710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,632 DEBUG Processing 579/715 atomic regions from SNP 173401 to 174001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,680 DEBUG Processing 224/668 atomic regions from SNP 66948 to 67548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,853 DEBUG Processing 259/696 atomic regions from SNP 77410 to 78010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,864 DEBUG Processing 580/715 atomic regions from SNP 173701 to 174301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,906 DEBUG Processing 225/668 atomic regions from SNP 67248 to 67848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,079 DEBUG Processing 260/696 atomic regions from SNP 77710 to 78310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,099 DEBUG Processing 581/715 atomic regions from SNP 174001 to 174601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,134 DEBUG Processing 226/668 atomic regions from SNP 67548 to 68148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,303 DEBUG Processing 261/696 atomic regions from SNP 78010 to 78610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,332 DEBUG Processing 582/715 atomic regions from SNP 174301 to 174901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,363 DEBUG Processing 227/668 atomic regions from SNP 67848 to 68448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,522 DEBUG Processing 262/696 atomic regions from SNP 78310 to 78910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,558 DEBUG Processing 583/715 atomic regions from SNP 174601 to 175201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,596 DEBUG Processing 228/668 atomic regions from SNP 68148 to 68748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,741 DEBUG Processing 263/696 atomic regions from SNP 78610 to 79210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,787 DEBUG Processing 584/715 atomic regions from SNP 174901 to 175501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,841 DEBUG Processing 229/668 atomic regions from SNP 68448 to 69048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,966 DEBUG Processing 264/696 atomic regions from SNP 78910 to 79510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,020 DEBUG Processing 585/715 atomic regions from SNP 175201 to 175801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,070 DEBUG Processing 230/668 atomic regions from SNP 68748 to 69348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,212 DEBUG Processing 265/696 atomic regions from SNP 79210 to 79810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,266 DEBUG Processing 586/715 atomic regions from SNP 175501 to 176101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,320 DEBUG Processing 231/668 atomic regions from SNP 69048 to 69648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,461 DEBUG Processing 266/696 atomic regions from SNP 79510 to 80110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,506 DEBUG Processing 587/715 atomic regions from SNP 175801 to 176401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,544 DEBUG Processing 232/668 atomic regions from SNP 69348 to 69948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,690 DEBUG Processing 267/696 atomic regions from SNP 79810 to 80410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,747 DEBUG Processing 588/715 atomic regions from SNP 176101 to 176701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,777 DEBUG Processing 233/668 atomic regions from SNP 69648 to 70248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,913 DEBUG Processing 268/696 atomic regions from SNP 80110 to 80710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,999 DEBUG Processing 589/715 atomic regions from SNP 176401 to 177001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,011 DEBUG Processing 234/668 atomic regions from SNP 69948 to 70548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,132 DEBUG Processing 269/696 atomic regions from SNP 80410 to 81010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,246 DEBUG Processing 235/668 atomic regions from SNP 70248 to 70848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,259 DEBUG Processing 590/715 atomic regions from SNP 176701 to 177301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,347 DEBUG Processing 270/696 atomic regions from SNP 80710 to 81310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,481 DEBUG Processing 236/668 atomic regions from SNP 70548 to 71148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,495 DEBUG Processing 591/715 atomic regions from SNP 177001 to 177601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,567 DEBUG Processing 271/696 atomic regions from SNP 81010 to 81610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,716 DEBUG Processing 237/668 atomic regions from SNP 70848 to 71448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,730 DEBUG Processing 592/715 atomic regions from SNP 177301 to 177901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,789 DEBUG Processing 272/696 atomic regions from SNP 81310 to 81910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,963 DEBUG Processing 593/715 atomic regions from SNP 177601 to 178201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,973 DEBUG Processing 238/668 atomic regions from SNP 71148 to 71748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,035 DEBUG Processing 273/696 atomic regions from SNP 81610 to 82210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,191 DEBUG Processing 594/715 atomic regions from SNP 177901 to 178501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,219 DEBUG Processing 239/668 atomic regions from SNP 71448 to 72048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,280 DEBUG Processing 274/696 atomic regions from SNP 81910 to 82510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,418 DEBUG Processing 595/715 atomic regions from SNP 178201 to 178801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,456 DEBUG Processing 240/668 atomic regions from SNP 71748 to 72348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,514 DEBUG Processing 275/696 atomic regions from SNP 82210 to 82810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,648 DEBUG Processing 596/715 atomic regions from SNP 178501 to 179101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,688 DEBUG Processing 241/668 atomic regions from SNP 72048 to 72648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,742 DEBUG Processing 276/696 atomic regions from SNP 82510 to 83110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,873 DEBUG Processing 597/715 atomic regions from SNP 178801 to 179401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,922 DEBUG Processing 242/668 atomic regions from SNP 72348 to 72948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,966 DEBUG Processing 277/696 atomic regions from SNP 82810 to 83410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,106 DEBUG Processing 598/715 atomic regions from SNP 179101 to 179701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,151 DEBUG Processing 243/668 atomic regions from SNP 72648 to 73248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,204 DEBUG Processing 278/696 atomic regions from SNP 83110 to 83710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,341 DEBUG Processing 599/715 atomic regions from SNP 179401 to 180001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,383 DEBUG Processing 244/668 atomic regions from SNP 72948 to 73548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,425 DEBUG Processing 279/696 atomic regions from SNP 83410 to 84010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,574 DEBUG Processing 600/715 atomic regions from SNP 179701 to 180301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,631 DEBUG Processing 245/668 atomic regions from SNP 73248 to 73848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,649 DEBUG Processing 280/696 atomic regions from SNP 83710 to 84310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,808 DEBUG Processing 601/715 atomic regions from SNP 180001 to 180601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,875 DEBUG Processing 281/696 atomic regions from SNP 84010 to 84610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,893 DEBUG Processing 246/668 atomic regions from SNP 73548 to 74148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,054 DEBUG Processing 602/715 atomic regions from SNP 180301 to 180901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,105 DEBUG Processing 282/696 atomic regions from SNP 84310 to 84910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,129 DEBUG Processing 247/668 atomic regions from SNP 73848 to 74448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,291 DEBUG Processing 603/715 atomic regions from SNP 180601 to 181201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,344 DEBUG Processing 283/696 atomic regions from SNP 84610 to 85210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,358 DEBUG Processing 248/668 atomic regions from SNP 74148 to 74748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,526 DEBUG Processing 604/715 atomic regions from SNP 180901 to 181501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,584 DEBUG Processing 284/696 atomic regions from SNP 84910 to 85510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,586 DEBUG Processing 249/668 atomic regions from SNP 74448 to 75048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,758 DEBUG Processing 605/715 atomic regions from SNP 181201 to 181801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,813 DEBUG Processing 250/668 atomic regions from SNP 74748 to 75348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,830 DEBUG Processing 285/696 atomic regions from SNP 85210 to 85810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,990 DEBUG Processing 606/715 atomic regions from SNP 181501 to 182101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,042 DEBUG Processing 251/668 atomic regions from SNP 75048 to 75648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,062 DEBUG Processing 286/696 atomic regions from SNP 85510 to 86110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,090 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:54:35,092 DEBUG chr15: Signal quantile: 0.988. signal threshold: 12. Best RMSEA: 0.013 2025-01-31 09:54:35,236 DEBUG Processing 607/715 atomic regions from SNP 181801 to 182401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,268 DEBUG Processing 252/668 atomic regions from SNP 75348 to 75948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,289 DEBUG Processing 287/696 atomic regions from SNP 85810 to 86410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,489 DEBUG Processing 608/715 atomic regions from SNP 182101 to 182701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,518 DEBUG Processing 288/696 atomic regions from SNP 86110 to 86710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,521 DEBUG Processing 253/668 atomic regions from SNP 75648 to 76248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,745 DEBUG Processing 289/696 atomic regions from SNP 86410 to 87010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,750 DEBUG Processing 609/715 atomic regions from SNP 182401 to 183001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,759 DEBUG Processing 254/668 atomic regions from SNP 75948 to 76548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,971 DEBUG Processing 290/696 atomic regions from SNP 86710 to 87310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,983 DEBUG Processing 255/668 atomic regions from SNP 76248 to 76848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,991 DEBUG Processing 610/715 atomic regions from SNP 182701 to 183301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,196 DEBUG Processing 291/696 atomic regions from SNP 87010 to 87610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,203 DEBUG Processing 256/668 atomic regions from SNP 76548 to 77148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,234 DEBUG Processing 611/715 atomic regions from SNP 183001 to 183601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,425 DEBUG Processing 292/696 atomic regions from SNP 87310 to 87910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,426 DEBUG Processing 257/668 atomic regions from SNP 76848 to 77448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,494 DEBUG Processing 612/715 atomic regions from SNP 183301 to 183901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,651 DEBUG Processing 258/668 atomic regions from SNP 77148 to 77748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,663 DEBUG Processing 293/696 atomic regions from SNP 87610 to 88210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,719 DEBUG Processing 613/715 atomic regions from SNP 183601 to 184201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,875 DEBUG Processing 259/668 atomic regions from SNP 77448 to 78048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,893 DEBUG Processing 294/696 atomic regions from SNP 87910 to 88510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,964 DEBUG Processing 614/715 atomic regions from SNP 183901 to 184501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,013 DEBUG chr15 total SNP count: 177023 2025-01-31 09:54:37,013 DEBUG chr15 length: 104043685 2025-01-31 09:54:37,013 DEBUG ----------------------------------------- 2025-01-31 09:54:37,013 INFO Processing SNPs in chr15 2025-01-31 09:54:37,108 DEBUG Processing 260/668 atomic regions from SNP 77748 to 78348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,116 DEBUG Processing 295/696 atomic regions from SNP 88210 to 88810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,207 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 177023)] 2025-01-31 09:54:37,222 DEBUG Processing 615/715 atomic regions from SNP 184201 to 184801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,331 DEBUG Processing 261/668 atomic regions from SNP 78048 to 78648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,338 DEBUG Processing 296/696 atomic regions from SNP 88510 to 89110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,338 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:37,488 DEBUG Processing 616/715 atomic regions from SNP 184501 to 185101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,580 DEBUG Processing 262/668 atomic regions from SNP 78348 to 78948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,596 DEBUG Processing 297/696 atomic regions from SNP 88810 to 89410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,737 DEBUG Processing 617/715 atomic regions from SNP 184801 to 185401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,817 DEBUG Processing 263/668 atomic regions from SNP 78648 to 79248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,819 DEBUG Processing 298/696 atomic regions from SNP 89110 to 89710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,000 DEBUG Processing 618/715 atomic regions from SNP 185101 to 185701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,044 DEBUG Processing 299/696 atomic regions from SNP 89410 to 90010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,070 DEBUG Processing 264/668 atomic regions from SNP 78948 to 79548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,273 DEBUG Processing 300/696 atomic regions from SNP 89710 to 90310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,276 DEBUG Processing 619/715 atomic regions from SNP 185401 to 186001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,324 DEBUG Processing 265/668 atomic regions from SNP 79248 to 79848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,495 DEBUG Processing 301/696 atomic regions from SNP 90010 to 90610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,533 DEBUG Processing 620/715 atomic regions from SNP 185701 to 186301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,574 DEBUG Processing 266/668 atomic regions from SNP 79548 to 80148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,720 DEBUG Processing 302/696 atomic regions from SNP 90310 to 90910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,802 DEBUG Processing 621/715 atomic regions from SNP 186001 to 186601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,830 DEBUG Processing 267/668 atomic regions from SNP 79848 to 80448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,941 DEBUG Processing 303/696 atomic regions from SNP 90610 to 91210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,072 DEBUG Processing 622/715 atomic regions from SNP 186301 to 186901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,075 DEBUG Processing 268/668 atomic regions from SNP 80148 to 80748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,163 DEBUG Processing 304/696 atomic regions from SNP 90910 to 91510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,303 DEBUG Processing 269/668 atomic regions from SNP 80448 to 81048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,324 DEBUG Processing 623/715 atomic regions from SNP 186601 to 187201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,382 DEBUG Processing 305/696 atomic regions from SNP 91210 to 91810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,514 DEBUG Processing 270/668 atomic regions from SNP 80748 to 81348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,582 DEBUG Processing 624/715 atomic regions from SNP 186901 to 187501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,606 DEBUG Processing 306/696 atomic regions from SNP 91510 to 92110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,719 DEBUG Processing 271/668 atomic regions from SNP 81048 to 81648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,835 DEBUG Processing 307/696 atomic regions from SNP 91810 to 92410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,846 DEBUG Processing 625/715 atomic regions from SNP 187201 to 187801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,927 DEBUG Processing 272/668 atomic regions from SNP 81348 to 81948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,060 DEBUG Processing 308/696 atomic regions from SNP 92110 to 92710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,077 DEBUG Processing 626/715 atomic regions from SNP 187501 to 188101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,142 DEBUG Processing 273/668 atomic regions from SNP 81648 to 82248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,293 DEBUG Processing 309/696 atomic regions from SNP 92410 to 93010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,315 DEBUG Processing 627/715 atomic regions from SNP 187801 to 188401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,362 DEBUG Processing 274/668 atomic regions from SNP 81948 to 82548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,533 DEBUG Processing 310/696 atomic regions from SNP 92710 to 93310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,551 DEBUG Processing 628/715 atomic regions from SNP 188101 to 188701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,584 DEBUG Processing 275/668 atomic regions from SNP 82248 to 82848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,766 DEBUG Processing 311/696 atomic regions from SNP 93010 to 93610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,794 DEBUG Processing 629/715 atomic regions from SNP 188401 to 189001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,809 DEBUG Processing 276/668 atomic regions from SNP 82548 to 83148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,006 DEBUG Processing 312/696 atomic regions from SNP 93310 to 93910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,028 DEBUG Processing 277/668 atomic regions from SNP 82848 to 83448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,038 DEBUG Processing 630/715 atomic regions from SNP 188701 to 189301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,255 DEBUG Processing 313/696 atomic regions from SNP 93610 to 94210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,258 DEBUG Processing 278/668 atomic regions from SNP 83148 to 83748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,284 DEBUG Segmenting atomic regions: 2025-01-31 09:54:41,284 DEBUG Processing 631/715 atomic regions from SNP 189001 to 189601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,379 DEBUG Processing 1/651 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,495 DEBUG Processing 279/668 atomic regions from SNP 83448 to 84048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,501 DEBUG Processing 314/696 atomic regions from SNP 93910 to 94510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,537 DEBUG Processing 632/715 atomic regions from SNP 189301 to 189901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,597 DEBUG Processing 2/651 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,723 DEBUG Processing 315/696 atomic regions from SNP 94210 to 94810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,736 DEBUG Processing 280/668 atomic regions from SNP 83748 to 84348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,787 DEBUG Processing 633/715 atomic regions from SNP 189601 to 190201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,832 DEBUG Processing 3/651 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,945 DEBUG Processing 316/696 atomic regions from SNP 94510 to 95110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,957 DEBUG Processing 281/668 atomic regions from SNP 84048 to 84648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,069 DEBUG Processing 634/715 atomic regions from SNP 189901 to 190501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,086 DEBUG Processing 4/651 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,175 DEBUG Processing 282/668 atomic regions from SNP 84348 to 84948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,208 DEBUG Processing 317/696 atomic regions from SNP 94810 to 95410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,322 DEBUG Processing 5/651 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,328 DEBUG Processing 635/715 atomic regions from SNP 190201 to 190801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,392 DEBUG Processing 283/668 atomic regions from SNP 84648 to 85248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,458 DEBUG Processing 318/696 atomic regions from SNP 95110 to 95710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,562 DEBUG Processing 6/651 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,575 DEBUG Processing 636/715 atomic regions from SNP 190501 to 191101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,615 DEBUG Processing 284/668 atomic regions from SNP 84948 to 85548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,716 DEBUG Processing 319/696 atomic regions from SNP 95410 to 96010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,796 DEBUG Processing 7/651 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,819 DEBUG Processing 637/715 atomic regions from SNP 190801 to 191401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,833 DEBUG Processing 285/668 atomic regions from SNP 85248 to 85848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,950 DEBUG Processing 320/696 atomic regions from SNP 95710 to 96310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,029 DEBUG Processing 8/651 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,053 DEBUG Processing 286/668 atomic regions from SNP 85548 to 86148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,057 DEBUG Processing 638/715 atomic regions from SNP 191101 to 191701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,182 DEBUG Processing 321/696 atomic regions from SNP 96010 to 96610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,260 DEBUG Processing 9/651 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,279 DEBUG Processing 287/668 atomic regions from SNP 85848 to 86448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,298 DEBUG Processing 639/715 atomic regions from SNP 191401 to 192001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,413 DEBUG Processing 322/696 atomic regions from SNP 96310 to 96910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,487 DEBUG Processing 10/651 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,509 DEBUG Processing 288/668 atomic regions from SNP 86148 to 86748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,542 DEBUG Processing 640/715 atomic regions from SNP 191701 to 192301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,652 DEBUG Processing 323/696 atomic regions from SNP 96610 to 97210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,734 DEBUG Processing 11/651 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,741 DEBUG Processing 289/668 atomic regions from SNP 86448 to 87048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,787 DEBUG Processing 641/715 atomic regions from SNP 192001 to 192601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,893 DEBUG Processing 324/696 atomic regions from SNP 96910 to 97510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,974 DEBUG Processing 290/668 atomic regions from SNP 86748 to 87348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,991 DEBUG Processing 12/651 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,034 DEBUG Processing 642/715 atomic regions from SNP 192301 to 192901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,147 DEBUG Processing 325/696 atomic regions from SNP 97210 to 97810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,205 DEBUG Processing 291/668 atomic regions from SNP 87048 to 87648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,226 DEBUG Processing 13/651 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,276 DEBUG Processing 643/715 atomic regions from SNP 192601 to 193201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,391 DEBUG Processing 326/696 atomic regions from SNP 97510 to 98110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,438 DEBUG Processing 292/668 atomic regions from SNP 87348 to 87948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,462 DEBUG Processing 14/651 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,514 DEBUG Processing 644/715 atomic regions from SNP 192901 to 193501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,636 DEBUG Processing 327/696 atomic regions from SNP 97810 to 98410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,663 DEBUG Processing 293/668 atomic regions from SNP 87648 to 88248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,692 DEBUG Processing 15/651 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,751 DEBUG Processing 645/715 atomic regions from SNP 193201 to 193801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,875 DEBUG Processing 328/696 atomic regions from SNP 98110 to 98710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,890 DEBUG Processing 294/668 atomic regions from SNP 87948 to 88548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,921 DEBUG Processing 16/651 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,987 DEBUG Processing 646/715 atomic regions from SNP 193501 to 194101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,118 DEBUG Processing 295/668 atomic regions from SNP 88248 to 88848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,121 DEBUG Processing 329/696 atomic regions from SNP 98410 to 99010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,155 DEBUG Processing 17/651 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,229 DEBUG Processing 647/715 atomic regions from SNP 193801 to 194401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,353 DEBUG Processing 330/696 atomic regions from SNP 98710 to 99310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,363 DEBUG Processing 296/668 atomic regions from SNP 88548 to 89148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,384 DEBUG Processing 18/651 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,466 DEBUG Processing 648/715 atomic regions from SNP 194101 to 194701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,584 DEBUG Processing 331/696 atomic regions from SNP 99010 to 99610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,612 DEBUG Processing 19/651 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,628 DEBUG Processing 297/668 atomic regions from SNP 88848 to 89448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,705 DEBUG Processing 649/715 atomic regions from SNP 194401 to 195001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,815 DEBUG Processing 332/696 atomic regions from SNP 99310 to 99910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,840 DEBUG Processing 20/651 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,884 DEBUG Processing 298/668 atomic regions from SNP 89148 to 89748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,943 DEBUG Processing 650/715 atomic regions from SNP 194701 to 195301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,049 DEBUG Processing 333/696 atomic regions from SNP 99610 to 100210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,076 DEBUG Processing 21/651 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,118 DEBUG Processing 299/668 atomic regions from SNP 89448 to 90048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,190 DEBUG Processing 651/715 atomic regions from SNP 195001 to 195601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,281 DEBUG Processing 334/696 atomic regions from SNP 99910 to 100510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,305 DEBUG Processing 22/651 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,367 DEBUG Processing 300/668 atomic regions from SNP 89748 to 90348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,424 DEBUG Processing 652/715 atomic regions from SNP 195301 to 195901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,514 DEBUG Processing 335/696 atomic regions from SNP 100210 to 100810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,536 DEBUG Processing 23/651 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,631 DEBUG Processing 301/668 atomic regions from SNP 90048 to 90648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,659 DEBUG Processing 653/715 atomic regions from SNP 195601 to 196201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,742 DEBUG Processing 336/696 atomic regions from SNP 100510 to 101110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,764 DEBUG Processing 24/651 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,897 DEBUG Processing 302/668 atomic regions from SNP 90348 to 90948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,914 DEBUG Processing 654/715 atomic regions from SNP 195901 to 196501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,975 DEBUG Processing 337/696 atomic regions from SNP 100810 to 101410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,992 DEBUG Processing 25/651 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,158 DEBUG Processing 655/715 atomic regions from SNP 196201 to 196801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,161 DEBUG Processing 303/668 atomic regions from SNP 90648 to 91248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,211 DEBUG Processing 338/696 atomic regions from SNP 101110 to 101710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,221 DEBUG Processing 26/651 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,416 DEBUG Processing 304/668 atomic regions from SNP 90948 to 91548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,420 DEBUG Processing 656/715 atomic regions from SNP 196501 to 197101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,449 DEBUG Processing 27/651 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,467 DEBUG Processing 339/696 atomic regions from SNP 101410 to 102010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,646 DEBUG Processing 305/668 atomic regions from SNP 91248 to 91848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,668 DEBUG Processing 657/715 atomic regions from SNP 196801 to 197401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,679 DEBUG Processing 28/651 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,713 DEBUG Processing 340/696 atomic regions from SNP 101710 to 102310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,868 DEBUG Processing 306/668 atomic regions from SNP 91548 to 92148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,902 DEBUG Processing 29/651 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,914 DEBUG Processing 658/715 atomic regions from SNP 197101 to 197701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,948 DEBUG Processing 341/696 atomic regions from SNP 102010 to 102610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,092 DEBUG Processing 307/668 atomic regions from SNP 91848 to 92448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,129 DEBUG Processing 30/651 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,157 DEBUG Processing 659/715 atomic regions from SNP 197401 to 198001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,189 DEBUG Processing 342/696 atomic regions from SNP 102310 to 102910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,316 DEBUG Processing 308/668 atomic regions from SNP 92148 to 92748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,362 DEBUG Processing 31/651 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,410 DEBUG Processing 660/715 atomic regions from SNP 197701 to 198301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,442 DEBUG Processing 343/696 atomic regions from SNP 102610 to 103210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,541 DEBUG Processing 309/668 atomic regions from SNP 92448 to 93048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,584 DEBUG Processing 32/651 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,654 DEBUG Processing 661/715 atomic regions from SNP 198001 to 198601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,681 DEBUG Processing 344/696 atomic regions from SNP 102910 to 103510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,755 DEBUG Processing 310/668 atomic regions from SNP 92748 to 93348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,812 DEBUG Processing 33/651 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,901 DEBUG Processing 662/715 atomic regions from SNP 198301 to 198901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,917 DEBUG Processing 345/696 atomic regions from SNP 103210 to 103810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,977 DEBUG Processing 311/668 atomic regions from SNP 93048 to 93648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,034 DEBUG Processing 34/651 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,149 DEBUG Processing 663/715 atomic regions from SNP 198601 to 199201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,157 DEBUG Processing 346/696 atomic regions from SNP 103510 to 104110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,197 DEBUG Processing 312/668 atomic regions from SNP 93348 to 93948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,252 DEBUG Processing 35/651 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,392 DEBUG Processing 347/696 atomic regions from SNP 103810 to 104410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,396 DEBUG Processing 664/715 atomic regions from SNP 198901 to 199501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,418 DEBUG Processing 313/668 atomic regions from SNP 93648 to 94248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,477 DEBUG Processing 36/651 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,625 DEBUG Processing 348/696 atomic regions from SNP 104110 to 104710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,640 DEBUG Processing 665/715 atomic regions from SNP 199201 to 199801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,647 DEBUG Processing 314/668 atomic regions from SNP 93948 to 94548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,702 DEBUG Processing 37/651 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,864 DEBUG Processing 349/696 atomic regions from SNP 104410 to 105010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,872 DEBUG Processing 315/668 atomic regions from SNP 94248 to 94848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,884 DEBUG Processing 666/715 atomic regions from SNP 199501 to 200101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,930 DEBUG Processing 38/651 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,096 DEBUG Processing 350/696 atomic regions from SNP 104710 to 105310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,106 DEBUG Processing 316/668 atomic regions from SNP 94548 to 95148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,142 DEBUG Processing 667/715 atomic regions from SNP 199801 to 200401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,171 DEBUG Processing 39/651 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,332 DEBUG Processing 351/696 atomic regions from SNP 105010 to 105610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,340 DEBUG Processing 317/668 atomic regions from SNP 94848 to 95448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,392 DEBUG Processing 668/715 atomic regions from SNP 200101 to 200701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,404 DEBUG Processing 40/651 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,568 DEBUG Processing 318/668 atomic regions from SNP 95148 to 95748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,571 DEBUG Processing 352/696 atomic regions from SNP 105310 to 105910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,637 DEBUG Processing 41/651 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,639 DEBUG Processing 669/715 atomic regions from SNP 200401 to 201001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,806 DEBUG Processing 353/696 atomic regions from SNP 105610 to 106210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,818 DEBUG Processing 319/668 atomic regions from SNP 95448 to 96048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,870 DEBUG Processing 42/651 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,882 DEBUG Processing 670/715 atomic regions from SNP 200701 to 201301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,038 DEBUG Processing 354/696 atomic regions from SNP 105910 to 106510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,069 DEBUG Processing 320/668 atomic regions from SNP 95748 to 96348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,103 DEBUG Processing 43/651 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,133 DEBUG Processing 671/715 atomic regions from SNP 201001 to 201601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,271 DEBUG Processing 355/696 atomic regions from SNP 106210 to 106810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,322 DEBUG Processing 321/668 atomic regions from SNP 96048 to 96648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,335 DEBUG Processing 44/651 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,383 DEBUG Processing 672/715 atomic regions from SNP 201301 to 201901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,503 DEBUG Processing 356/696 atomic regions from SNP 106510 to 107110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,568 DEBUG Processing 322/668 atomic regions from SNP 96348 to 96948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,569 DEBUG Processing 45/651 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,629 DEBUG Processing 673/715 atomic regions from SNP 201601 to 202201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,735 DEBUG Processing 357/696 atomic regions from SNP 106810 to 107410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,801 DEBUG Processing 323/668 atomic regions from SNP 96648 to 97248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,804 DEBUG Processing 46/651 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,877 DEBUG Processing 674/715 atomic regions from SNP 201901 to 202501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,970 DEBUG Processing 358/696 atomic regions from SNP 107110 to 107710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,033 DEBUG Processing 47/651 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,034 DEBUG Processing 324/668 atomic regions from SNP 96948 to 97548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,119 DEBUG Processing 675/715 atomic regions from SNP 202201 to 202801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,206 DEBUG Processing 359/696 atomic regions from SNP 107410 to 108010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,248 DEBUG Processing 325/668 atomic regions from SNP 97248 to 97848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,260 DEBUG Processing 48/651 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,358 DEBUG Processing 676/715 atomic regions from SNP 202501 to 203101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,439 DEBUG Processing 360/696 atomic regions from SNP 107710 to 108310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,456 DEBUG Processing 326/668 atomic regions from SNP 97548 to 98148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,485 DEBUG Processing 49/651 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,597 DEBUG Processing 677/715 atomic regions from SNP 202801 to 203401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,665 DEBUG Processing 327/668 atomic regions from SNP 97848 to 98448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,673 DEBUG Processing 361/696 atomic regions from SNP 108010 to 108610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,712 DEBUG Processing 50/651 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,836 DEBUG Processing 678/715 atomic regions from SNP 203101 to 203701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,889 DEBUG Processing 328/668 atomic regions from SNP 98148 to 98748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,907 DEBUG Processing 362/696 atomic regions from SNP 108310 to 108910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,940 DEBUG Processing 51/651 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,075 DEBUG Processing 679/715 atomic regions from SNP 203401 to 204001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,127 DEBUG Processing 329/668 atomic regions from SNP 98448 to 99048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,143 DEBUG Processing 363/696 atomic regions from SNP 108610 to 109210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,168 DEBUG Processing 52/651 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,324 DEBUG Processing 680/715 atomic regions from SNP 203701 to 204301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,382 DEBUG Processing 330/668 atomic regions from SNP 98748 to 99348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,397 DEBUG Processing 364/696 atomic regions from SNP 108910 to 109510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,405 DEBUG Processing 53/651 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,564 DEBUG Processing 681/715 atomic regions from SNP 204001 to 204601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,597 DEBUG Processing 331/668 atomic regions from SNP 99048 to 99648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,630 DEBUG Processing 365/696 atomic regions from SNP 109210 to 109810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,630 DEBUG Processing 54/651 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,804 DEBUG Processing 682/715 atomic regions from SNP 204301 to 204901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,817 DEBUG Processing 332/668 atomic regions from SNP 99348 to 99948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,864 DEBUG Processing 55/651 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,870 DEBUG Processing 366/696 atomic regions from SNP 109510 to 110110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,037 DEBUG Processing 333/668 atomic regions from SNP 99648 to 100248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,061 DEBUG Processing 683/715 atomic regions from SNP 204601 to 205201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,110 DEBUG Processing 56/651 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,112 DEBUG Processing 367/696 atomic regions from SNP 109810 to 110410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,253 DEBUG Processing 334/668 atomic regions from SNP 99948 to 100548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,304 DEBUG Processing 684/715 atomic regions from SNP 204901 to 205501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,351 DEBUG Processing 368/696 atomic regions from SNP 110110 to 110710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,354 DEBUG Processing 57/651 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,465 DEBUG Processing 335/668 atomic regions from SNP 100248 to 100848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,552 DEBUG Processing 685/715 atomic regions from SNP 205201 to 205801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,588 DEBUG Processing 58/651 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,593 DEBUG Processing 369/696 atomic regions from SNP 110410 to 111010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,696 DEBUG Processing 336/668 atomic regions from SNP 100548 to 101148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,826 DEBUG Processing 59/651 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,832 DEBUG Processing 686/715 atomic regions from SNP 205501 to 206101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,839 DEBUG Processing 370/696 atomic regions from SNP 110710 to 111310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,922 DEBUG Processing 337/668 atomic regions from SNP 100848 to 101448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,049 DEBUG Processing 60/651 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,070 DEBUG Processing 371/696 atomic regions from SNP 111010 to 111610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,092 DEBUG Processing 687/715 atomic regions from SNP 205801 to 206401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,140 DEBUG Processing 338/668 atomic regions from SNP 101148 to 101748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,275 DEBUG Processing 61/651 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,306 DEBUG Processing 372/696 atomic regions from SNP 111310 to 111910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,337 DEBUG Processing 688/715 atomic regions from SNP 206101 to 206701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,364 DEBUG Processing 339/668 atomic regions from SNP 101448 to 102048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,493 DEBUG Processing 62/651 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,539 DEBUG Processing 373/696 atomic regions from SNP 111610 to 112210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,574 DEBUG Processing 689/715 atomic regions from SNP 206401 to 207001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,583 DEBUG Processing 340/668 atomic regions from SNP 101748 to 102348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,705 DEBUG Processing 63/651 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,765 DEBUG Processing 374/696 atomic regions from SNP 111910 to 112510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,797 DEBUG Processing 341/668 atomic regions from SNP 102048 to 102648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,805 DEBUG Processing 690/715 atomic regions from SNP 206701 to 207301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,823 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:54:55,917 DEBUG Processing 64/651 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,000 DEBUG Processing 375/696 atomic regions from SNP 112210 to 112810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,012 DEBUG Processing 342/668 atomic regions from SNP 102348 to 102948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,066 DEBUG Processing 691/715 atomic regions from SNP 207001 to 207601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,133 DEBUG Processing 65/651 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,225 DEBUG Processing 343/668 atomic regions from SNP 102648 to 103248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,231 DEBUG Processing 376/696 atomic regions from SNP 112510 to 113110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,320 DEBUG Processing 692/715 atomic regions from SNP 207301 to 207901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,347 DEBUG Processing 66/651 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,439 DEBUG Processing 344/668 atomic regions from SNP 102948 to 103548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,464 DEBUG Processing 377/696 atomic regions from SNP 112810 to 113410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,566 DEBUG Processing 693/715 atomic regions from SNP 207601 to 208201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,572 DEBUG Processing 67/651 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,655 DEBUG Processing 345/668 atomic regions from SNP 103248 to 103848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,719 DEBUG Processing 378/696 atomic regions from SNP 113110 to 113710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,801 DEBUG Processing 68/651 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,834 DEBUG Processing 694/715 atomic regions from SNP 207901 to 208501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,893 DEBUG Processing 346/668 atomic regions from SNP 103548 to 104148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,968 DEBUG Processing 379/696 atomic regions from SNP 113410 to 114010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,026 DEBUG Processing 69/651 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,086 DEBUG Processing 695/715 atomic regions from SNP 208201 to 208801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,127 DEBUG Processing 347/668 atomic regions from SNP 103848 to 104448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,224 DEBUG Processing 380/696 atomic regions from SNP 113710 to 114310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,255 DEBUG Processing 70/651 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,328 DEBUG Processing 696/715 atomic regions from SNP 208501 to 209101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,370 DEBUG Processing 348/668 atomic regions from SNP 104148 to 104748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,476 DEBUG Processing 71/651 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,481 DEBUG Processing 381/696 atomic regions from SNP 114010 to 114610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,565 DEBUG Processing 697/715 atomic regions from SNP 208801 to 209401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,612 DEBUG Processing 349/668 atomic regions from SNP 104448 to 105048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,698 DEBUG Processing 72/651 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,748 DEBUG Processing 382/696 atomic regions from SNP 114310 to 114910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,817 DEBUG Processing 698/715 atomic regions from SNP 209101 to 209701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,841 DEBUG Processing 350/668 atomic regions from SNP 104748 to 105348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,918 DEBUG Processing 73/651 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,013 DEBUG Processing 383/696 atomic regions from SNP 114610 to 115210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,070 DEBUG Processing 351/668 atomic regions from SNP 105048 to 105648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,081 DEBUG Processing 699/715 atomic regions from SNP 209401 to 210001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,136 DEBUG Processing 74/651 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,278 DEBUG Processing 384/696 atomic regions from SNP 114910 to 115510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,316 DEBUG Processing 352/668 atomic regions from SNP 105348 to 105948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,323 DEBUG Processing 700/715 atomic regions from SNP 209701 to 210301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,370 DEBUG Processing 75/651 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,534 DEBUG Processing 385/696 atomic regions from SNP 115210 to 115810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,563 DEBUG Processing 353/668 atomic regions from SNP 105648 to 106248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,584 DEBUG Processing 701/715 atomic regions from SNP 210001 to 210601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,591 DEBUG Processing 76/651 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,784 DEBUG Processing 386/696 atomic regions from SNP 115510 to 116110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,811 DEBUG Processing 354/668 atomic regions from SNP 105948 to 106548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,815 DEBUG Processing 77/651 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,847 DEBUG Processing 702/715 atomic regions from SNP 210301 to 210901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,038 DEBUG Processing 355/668 atomic regions from SNP 106248 to 106848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,039 DEBUG Processing 387/696 atomic regions from SNP 115810 to 116410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,042 DEBUG Processing 78/651 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,104 DEBUG Processing 703/715 atomic regions from SNP 210601 to 211201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,119 DEBUG Segmenting atomic regions: 2025-01-31 09:54:59,203 DEBUG Processing 1/589 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,261 DEBUG Processing 79/651 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,266 DEBUG Processing 356/668 atomic regions from SNP 106548 to 107148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,301 DEBUG Processing 388/696 atomic regions from SNP 116110 to 116710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,344 DEBUG Processing 704/715 atomic regions from SNP 210901 to 211501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,409 DEBUG Processing 2/589 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,487 DEBUG Processing 357/668 atomic regions from SNP 106848 to 107448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,490 DEBUG Processing 80/651 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,552 DEBUG Processing 389/696 atomic regions from SNP 116410 to 117010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,599 DEBUG Processing 705/715 atomic regions from SNP 211201 to 211801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,624 DEBUG Processing 3/589 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,705 DEBUG Processing 358/668 atomic regions from SNP 107148 to 107748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,709 DEBUG Processing 81/651 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,784 DEBUG Processing 390/696 atomic regions from SNP 116710 to 117310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,835 DEBUG Processing 706/715 atomic regions from SNP 211501 to 212101 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,842 DEBUG Processing 4/589 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,922 DEBUG Processing 359/668 atomic regions from SNP 107448 to 108048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,929 DEBUG Processing 82/651 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,013 DEBUG Processing 391/696 atomic regions from SNP 117010 to 117610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,069 DEBUG Processing 5/589 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,077 DEBUG Processing 707/715 atomic regions from SNP 211801 to 212401 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,147 DEBUG Processing 360/668 atomic regions from SNP 107748 to 108348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,147 DEBUG Processing 83/651 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,236 DEBUG Processing 392/696 atomic regions from SNP 117310 to 117910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,315 DEBUG Processing 6/589 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,315 DEBUG Processing 708/715 atomic regions from SNP 212101 to 212701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,367 DEBUG Processing 361/668 atomic regions from SNP 108048 to 108648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,392 DEBUG Processing 84/651 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,461 DEBUG Processing 393/696 atomic regions from SNP 117610 to 118210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,543 DEBUG Processing 7/589 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,561 DEBUG Processing 709/715 atomic regions from SNP 212401 to 213001 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,590 DEBUG Processing 362/668 atomic regions from SNP 108348 to 108948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,631 DEBUG Processing 85/651 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,687 DEBUG Processing 394/696 atomic regions from SNP 117910 to 118510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,767 DEBUG Processing 8/589 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,808 DEBUG Processing 710/715 atomic regions from SNP 212701 to 213301 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,810 DEBUG Processing 363/668 atomic regions from SNP 108648 to 109248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,848 DEBUG Processing 86/651 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,909 DEBUG Processing 395/696 atomic regions from SNP 118210 to 118810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,990 DEBUG Processing 9/589 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,024 DEBUG Processing 364/668 atomic regions from SNP 108948 to 109548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,046 DEBUG Processing 711/715 atomic regions from SNP 213001 to 213601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,067 DEBUG Processing 87/651 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,134 DEBUG Processing 396/696 atomic regions from SNP 118510 to 119110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,212 DEBUG Processing 10/589 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,238 DEBUG Processing 365/668 atomic regions from SNP 109248 to 109848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,279 DEBUG Processing 712/715 atomic regions from SNP 213301 to 213901 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,287 DEBUG Processing 88/651 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,357 DEBUG Processing 397/696 atomic regions from SNP 118810 to 119410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,431 DEBUG Processing 11/589 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,453 DEBUG Processing 366/668 atomic regions from SNP 109548 to 110148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,505 DEBUG Processing 89/651 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,513 DEBUG Processing 713/715 atomic regions from SNP 213601 to 214201 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,595 DEBUG Processing 398/696 atomic regions from SNP 119110 to 119710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,670 DEBUG Processing 367/668 atomic regions from SNP 109848 to 110448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,677 DEBUG Processing 12/589 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,725 DEBUG Processing 90/651 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,745 DEBUG Processing 714/715 atomic regions from SNP 213901 to 214501 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,846 DEBUG Processing 399/696 atomic regions from SNP 119410 to 120010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,884 DEBUG Processing 368/668 atomic regions from SNP 110148 to 110748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,926 DEBUG Processing 13/589 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,957 DEBUG Processing 91/651 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,987 DEBUG Processing 715/715 atomic regions from SNP 214201 to 214801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,070 DEBUG Processing 400/696 atomic regions from SNP 119710 to 120310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,099 DEBUG Processing 369/668 atomic regions from SNP 110448 to 111048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,144 DEBUG Unique SNPs positions in subchromosome 1: 214802 2025-01-31 09:55:02,149 DEBUG Processing 14/589 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,178 DEBUG Processing 92/651 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,295 DEBUG Processing 401/696 atomic regions from SNP 120010 to 120610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,314 DEBUG Processing 370/668 atomic regions from SNP 110748 to 111348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,367 DEBUG Processing 15/589 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,394 DEBUG Processing 93/651 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,523 DEBUG Processing 402/696 atomic regions from SNP 120310 to 120910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,529 DEBUG Processing 371/668 atomic regions from SNP 111048 to 111648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,583 DEBUG Processing 16/589 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,611 DEBUG Processing 94/651 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,741 DEBUG Processing 372/668 atomic regions from SNP 111348 to 111948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,755 DEBUG Processing 403/696 atomic regions from SNP 120610 to 121210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,807 DEBUG Processing 17/589 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,839 DEBUG Processing 95/651 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,974 DEBUG Processing 373/668 atomic regions from SNP 111648 to 112248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,981 DEBUG Processing 404/696 atomic regions from SNP 120910 to 121510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,035 DEBUG Processing 18/589 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,056 DEBUG Processing 96/651 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,207 DEBUG Processing 374/668 atomic regions from SNP 111948 to 112548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,209 DEBUG Processing 405/696 atomic regions from SNP 121210 to 121810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,255 DEBUG Processing 19/589 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,278 DEBUG Processing 97/651 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,413 DEBUG Processing 375/668 atomic regions from SNP 112248 to 112848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,440 DEBUG Processing 406/696 atomic regions from SNP 121510 to 122110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,484 DEBUG Processing 20/589 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,503 DEBUG Processing 98/651 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,622 DEBUG Processing 376/668 atomic regions from SNP 112548 to 113148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,671 DEBUG Processing 407/696 atomic regions from SNP 121810 to 122410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,733 DEBUG Processing 21/589 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,739 DEBUG Processing 99/651 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,831 DEBUG Processing 377/668 atomic regions from SNP 112848 to 113448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,898 DEBUG Processing 408/696 atomic regions from SNP 122110 to 122710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,979 DEBUG Processing 22/589 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,001 DEBUG Processing 100/651 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,040 DEBUG Processing 378/668 atomic regions from SNP 113148 to 113748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,125 DEBUG Processing 409/696 atomic regions from SNP 122410 to 123010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,205 DEBUG Processing 23/589 atomic regions from SNP 6622 to 7222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,247 DEBUG Processing 101/651 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,247 DEBUG Processing 379/668 atomic regions from SNP 113448 to 114048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,349 DEBUG Processing 410/696 atomic regions from SNP 122710 to 123310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,428 DEBUG Processing 24/589 atomic regions from SNP 6922 to 7522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,456 DEBUG Processing 380/668 atomic regions from SNP 113748 to 114348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,488 DEBUG Processing 102/651 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,578 DEBUG Processing 411/696 atomic regions from SNP 123010 to 123610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,653 DEBUG Processing 25/589 atomic regions from SNP 7222 to 7822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,671 DEBUG Processing 381/668 atomic regions from SNP 114048 to 114648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,720 DEBUG Processing 103/651 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,835 DEBUG Processing 412/696 atomic regions from SNP 123310 to 123910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,873 DEBUG Processing 26/589 atomic regions from SNP 7522 to 8122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,889 DEBUG Processing 382/668 atomic regions from SNP 114348 to 114948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,942 DEBUG Processing 104/651 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,079 DEBUG Processing 413/696 atomic regions from SNP 123610 to 124210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,097 DEBUG Processing 27/589 atomic regions from SNP 7822 to 8422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,108 DEBUG Processing 383/668 atomic regions from SNP 114648 to 115248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,166 DEBUG Processing 105/651 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,316 DEBUG Processing 414/696 atomic regions from SNP 123910 to 124510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,325 DEBUG Processing 384/668 atomic regions from SNP 114948 to 115548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,336 DEBUG Processing 28/589 atomic regions from SNP 8122 to 8722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,388 DEBUG Processing 106/651 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,542 DEBUG Processing 385/668 atomic regions from SNP 115248 to 115848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,570 DEBUG Processing 415/696 atomic regions from SNP 124210 to 124810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,589 DEBUG Processing 29/589 atomic regions from SNP 8422 to 9022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,615 DEBUG Processing 107/651 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,757 DEBUG Processing 386/668 atomic regions from SNP 115548 to 116148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,830 DEBUG Processing 416/696 atomic regions from SNP 124510 to 125110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,841 DEBUG Processing 108/651 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,845 DEBUG Processing 30/589 atomic regions from SNP 8722 to 9322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,977 DEBUG Processing 387/668 atomic regions from SNP 115848 to 116448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,067 DEBUG Processing 109/651 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,092 DEBUG Processing 417/696 atomic regions from SNP 124810 to 125410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,102 DEBUG Processing 31/589 atomic regions from SNP 9022 to 9622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,198 DEBUG Processing 388/668 atomic regions from SNP 116148 to 116748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,288 DEBUG Processing 110/651 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,334 DEBUG Processing 418/696 atomic regions from SNP 125110 to 125710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,349 DEBUG Processing 32/589 atomic regions from SNP 9322 to 9922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,425 DEBUG Processing 389/668 atomic regions from SNP 116448 to 117048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,512 DEBUG Processing 111/651 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,591 DEBUG Processing 419/696 atomic regions from SNP 125410 to 126010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,613 DEBUG Processing 33/589 atomic regions from SNP 9622 to 10222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,671 DEBUG Processing 390/668 atomic regions from SNP 116748 to 117348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,748 DEBUG Processing 112/651 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,775 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:55:06,777 DEBUG chr16: Signal quantile: 0.991. signal threshold: 11. Best RMSEA: 0.014 2025-01-31 09:55:06,832 DEBUG Processing 420/696 atomic regions from SNP 125710 to 126310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,881 DEBUG Processing 34/589 atomic regions from SNP 9922 to 10522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,901 DEBUG Processing 391/668 atomic regions from SNP 117048 to 117648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,968 DEBUG Processing 113/651 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,068 DEBUG Processing 421/696 atomic regions from SNP 126010 to 126610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,127 DEBUG Processing 392/668 atomic regions from SNP 117348 to 117948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,138 DEBUG Processing 35/589 atomic regions from SNP 10222 to 10822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,194 DEBUG Processing 114/651 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,300 DEBUG Processing 422/696 atomic regions from SNP 126310 to 126910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,345 DEBUG Processing 393/668 atomic regions from SNP 117648 to 118248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,389 DEBUG Processing 36/589 atomic regions from SNP 10522 to 11122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,419 DEBUG Processing 115/651 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,534 DEBUG Processing 423/696 atomic regions from SNP 126610 to 127210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,556 DEBUG Processing 394/668 atomic regions from SNP 117948 to 118548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,640 DEBUG Processing 37/589 atomic regions from SNP 10822 to 11422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,644 DEBUG Processing 116/651 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,760 DEBUG Processing 424/696 atomic regions from SNP 126910 to 127510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,772 DEBUG Processing 395/668 atomic regions from SNP 118248 to 118848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,869 DEBUG Processing 117/651 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,898 DEBUG Processing 38/589 atomic regions from SNP 11122 to 11722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,980 DEBUG Processing 425/696 atomic regions from SNP 127210 to 127810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,009 DEBUG Processing 396/668 atomic regions from SNP 118548 to 119148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,089 DEBUG Processing 118/651 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,146 DEBUG Processing 39/589 atomic regions from SNP 11422 to 12022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,203 DEBUG Processing 426/696 atomic regions from SNP 127510 to 128110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,250 DEBUG Processing 397/668 atomic regions from SNP 118848 to 119448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,310 DEBUG Processing 119/651 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,374 DEBUG Processing 40/589 atomic regions from SNP 11722 to 12322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,438 DEBUG Processing 427/696 atomic regions from SNP 127810 to 128410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,495 DEBUG Processing 398/668 atomic regions from SNP 119148 to 119748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,500 DEBUG chr16 total SNP count: 166228 2025-01-31 09:55:08,500 DEBUG chr16 length: 98207768 2025-01-31 09:55:08,500 DEBUG ----------------------------------------- 2025-01-31 09:55:08,500 INFO Processing SNPs in chr16 2025-01-31 09:55:08,538 DEBUG Processing 120/651 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,594 DEBUG Processing 41/589 atomic regions from SNP 12022 to 12622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,676 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 166228)] 2025-01-31 09:55:08,689 DEBUG Processing 428/696 atomic regions from SNP 128110 to 128710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,724 DEBUG Processing 399/668 atomic regions from SNP 119448 to 120048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,756 DEBUG Processing 121/651 atomic regions from SNP 36120 to 36720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,794 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:08,812 DEBUG Processing 42/589 atomic regions from SNP 12322 to 12922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,943 DEBUG Processing 429/696 atomic regions from SNP 128410 to 129010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,955 DEBUG Processing 400/668 atomic regions from SNP 119748 to 120348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,983 DEBUG Processing 122/651 atomic regions from SNP 36420 to 37020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,052 DEBUG Processing 43/589 atomic regions from SNP 12622 to 13222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,191 DEBUG Processing 430/696 atomic regions from SNP 128710 to 129310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,195 DEBUG Processing 401/668 atomic regions from SNP 120048 to 120648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,209 DEBUG Processing 123/651 atomic regions from SNP 36720 to 37320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,298 DEBUG Processing 44/589 atomic regions from SNP 12922 to 13522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,415 DEBUG Processing 402/668 atomic regions from SNP 120348 to 120948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,437 DEBUG Processing 431/696 atomic regions from SNP 129010 to 129610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,445 DEBUG Processing 124/651 atomic regions from SNP 37020 to 37620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,525 DEBUG Processing 45/589 atomic regions from SNP 13222 to 13822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,629 DEBUG Processing 403/668 atomic regions from SNP 120648 to 121248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,689 DEBUG Processing 125/651 atomic regions from SNP 37320 to 37920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,703 DEBUG Processing 432/696 atomic regions from SNP 129310 to 129910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,759 DEBUG Processing 46/589 atomic regions from SNP 13522 to 14122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,859 DEBUG Processing 404/668 atomic regions from SNP 120948 to 121548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,912 DEBUG Processing 126/651 atomic regions from SNP 37620 to 38220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,956 DEBUG Processing 433/696 atomic regions from SNP 129610 to 130210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,998 DEBUG Processing 47/589 atomic regions from SNP 13822 to 14422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,069 DEBUG Processing 405/668 atomic regions from SNP 121248 to 121848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,136 DEBUG Processing 127/651 atomic regions from SNP 37920 to 38520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,197 DEBUG Processing 434/696 atomic regions from SNP 129910 to 130510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,245 DEBUG Processing 48/589 atomic regions from SNP 14122 to 14722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,276 DEBUG Processing 406/668 atomic regions from SNP 121548 to 122148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,363 DEBUG Processing 128/651 atomic regions from SNP 38220 to 38820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,441 DEBUG Processing 435/696 atomic regions from SNP 130210 to 130810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,486 DEBUG Processing 407/668 atomic regions from SNP 121848 to 122448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,491 DEBUG Processing 49/589 atomic regions from SNP 14422 to 15022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,583 DEBUG Processing 129/651 atomic regions from SNP 38520 to 39120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,672 DEBUG Processing 436/696 atomic regions from SNP 130510 to 131110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,698 DEBUG Processing 408/668 atomic regions from SNP 122148 to 122748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,723 DEBUG Processing 50/589 atomic regions from SNP 14722 to 15322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,799 DEBUG Processing 130/651 atomic regions from SNP 38820 to 39420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,899 DEBUG Processing 437/696 atomic regions from SNP 130810 to 131410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,901 DEBUG Processing 409/668 atomic regions from SNP 122448 to 123048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,939 DEBUG Processing 51/589 atomic regions from SNP 15022 to 15622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,012 DEBUG Processing 131/651 atomic regions from SNP 39120 to 39720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,113 DEBUG Processing 410/668 atomic regions from SNP 122748 to 123348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,129 DEBUG Processing 438/696 atomic regions from SNP 131110 to 131710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,172 DEBUG Processing 52/589 atomic regions from SNP 15322 to 15922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,227 DEBUG Processing 132/651 atomic regions from SNP 39420 to 40020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,331 DEBUG Processing 411/668 atomic regions from SNP 123048 to 123648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,357 DEBUG Processing 439/696 atomic regions from SNP 131410 to 132010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,425 DEBUG Processing 53/589 atomic regions from SNP 15622 to 16222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,442 DEBUG Processing 133/651 atomic regions from SNP 39720 to 40320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,506 DEBUG Subchromosome time: 213.86928885802627, subchromosome SNPs: 214802 2025-01-31 09:55:11,506 DEBUG Estimated BADs: [0.42, 1.25, 4.98, 0.42, 6.23, 1.25, 0.42, 1.25, 0.21, 1.25, 0.25, 8.72, 1.25, 6.23, 1.25, 3.74, 1.25, 3.74, 1.25, 0.42, 2.49, 0.62, 0.25, 1.25, 3.74, 1.25, 2.49] SNP counts: [16437, 3154, 309, 8840, 3246, 5898, 7802, 5102, 2103, 6301, 4957, 131, 6075, 1143, 22306, 5493, 4000, 9360, 17333, 2544, 2033, 19263, 6574, 21425, 8175, 15613, 9185] SNP IDs counts: [16437, 3154, 309, 8840, 3246, 5898, 7802, 5102, 2103, 6301, 4957, 131, 6075, 1143, 22306, 5493, 4000, 9360, 17333, 2544, 2033, 19263, 6574, 21425, 8175, 15613, 9185] Critical gap: 602096bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.20Mbp, 15.01Mbp, 15.18Mbp, 20.58Mbp, 22.31Mbp, 25.66Mbp, 30.03Mbp, 32.83Mbp, 34.08Mbp, 37.73Mbp, 40.75Mbp, 40.82Mbp, 44.06Mbp, 44.68Mbp, 56.85Mbp, 59.75Mbp, 61.87Mbp, 66.82Mbp, 76.32Mbp, 77.75Mbp, 78.93Mbp, 90.55Mbp, 94.52Mbp, 106.13Mbp, 110.71Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:55:11,506 DEBUG chr9 time: 213.86982264742255 s 2025-01-31 09:55:11,535 DEBUG Processing 412/668 atomic regions from SNP 123348 to 123948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,582 DEBUG Processing 440/696 atomic regions from SNP 131710 to 132310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,632 DEBUG chr9: Fitting background model for 27 segments 2025-01-31 09:55:11,663 DEBUG Processing 134/651 atomic regions from SNP 40020 to 40620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,678 DEBUG Processing 54/589 atomic regions from SNP 15922 to 16522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,749 DEBUG Processing 413/668 atomic regions from SNP 123648 to 124248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,817 DEBUG Processing 441/696 atomic regions from SNP 132010 to 132610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,893 DEBUG Processing 135/651 atomic regions from SNP 40320 to 40920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,939 DEBUG Processing 55/589 atomic regions from SNP 16222 to 16822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,961 DEBUG Processing 414/668 atomic regions from SNP 123948 to 124548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,074 DEBUG Processing 442/696 atomic regions from SNP 132310 to 132910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,126 DEBUG Processing 136/651 atomic regions from SNP 40620 to 41220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,173 DEBUG Processing 415/668 atomic regions from SNP 124248 to 124848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,204 DEBUG Processing 56/589 atomic regions from SNP 16522 to 17122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,320 DEBUG Processing 443/696 atomic regions from SNP 132610 to 133210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,358 DEBUG Processing 137/651 atomic regions from SNP 40920 to 41520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,382 DEBUG Processing 416/668 atomic regions from SNP 124548 to 125148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,463 DEBUG Processing 57/589 atomic regions from SNP 16822 to 17422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,569 DEBUG Processing 444/696 atomic regions from SNP 132910 to 133510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,591 DEBUG Processing 417/668 atomic regions from SNP 124848 to 125448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,595 DEBUG Processing 138/651 atomic regions from SNP 41220 to 41820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,725 DEBUG Processing 58/589 atomic regions from SNP 17122 to 17722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,799 DEBUG Processing 418/668 atomic regions from SNP 125148 to 125748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,813 DEBUG Processing 445/696 atomic regions from SNP 133210 to 133810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,831 DEBUG Processing 139/651 atomic regions from SNP 41520 to 42120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,987 DEBUG Processing 59/589 atomic regions from SNP 17422 to 18022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,011 DEBUG Processing 419/668 atomic regions from SNP 125448 to 126048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,055 DEBUG Processing 446/696 atomic regions from SNP 133510 to 134110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,068 DEBUG Processing 140/651 atomic regions from SNP 41820 to 42420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,224 DEBUG Processing 60/589 atomic regions from SNP 17722 to 18322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,225 DEBUG Processing 420/668 atomic regions from SNP 125748 to 126348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,295 DEBUG Processing 447/696 atomic regions from SNP 133810 to 134410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,304 DEBUG Processing 141/651 atomic regions from SNP 42120 to 42720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,436 DEBUG Processing 421/668 atomic regions from SNP 126048 to 126648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,462 DEBUG Processing 61/589 atomic regions from SNP 18022 to 18622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,527 DEBUG Processing 448/696 atomic regions from SNP 134110 to 134710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,542 DEBUG Processing 142/651 atomic regions from SNP 42420 to 43020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,644 DEBUG Processing 422/668 atomic regions from SNP 126348 to 126948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,692 DEBUG Processing 62/589 atomic regions from SNP 18322 to 18922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,761 DEBUG Processing 449/696 atomic regions from SNP 134410 to 135010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,774 DEBUG Processing 143/651 atomic regions from SNP 42720 to 43320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,857 DEBUG Processing 423/668 atomic regions from SNP 126648 to 127248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,910 DEBUG Processing 63/589 atomic regions from SNP 18622 to 19222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,001 DEBUG Processing 450/696 atomic regions from SNP 134710 to 135310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,010 DEBUG Processing 144/651 atomic regions from SNP 43020 to 43620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,113 DEBUG Processing 424/668 atomic regions from SNP 126948 to 127548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,135 DEBUG Processing 64/589 atomic regions from SNP 18922 to 19522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,241 DEBUG Processing 451/696 atomic regions from SNP 135010 to 135610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,273 DEBUG Processing 145/651 atomic regions from SNP 43320 to 43920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,332 DEBUG Processing 425/668 atomic regions from SNP 127248 to 127848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,360 DEBUG Processing 65/589 atomic regions from SNP 19222 to 19822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,481 DEBUG Processing 452/696 atomic regions from SNP 135310 to 135910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,525 DEBUG Processing 146/651 atomic regions from SNP 43620 to 44220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,549 DEBUG Processing 426/668 atomic regions from SNP 127548 to 128148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,590 DEBUG Processing 66/589 atomic regions from SNP 19522 to 20122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,722 DEBUG Processing 453/696 atomic regions from SNP 135610 to 136210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,765 DEBUG Processing 427/668 atomic regions from SNP 127848 to 128448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,767 DEBUG Processing 147/651 atomic regions from SNP 43920 to 44520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,818 DEBUG Processing 67/589 atomic regions from SNP 19822 to 20422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,961 DEBUG Processing 454/696 atomic regions from SNP 135910 to 136510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,982 DEBUG Processing 428/668 atomic regions from SNP 128148 to 128748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,008 DEBUG Processing 148/651 atomic regions from SNP 44220 to 44820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,048 DEBUG Processing 68/589 atomic regions from SNP 20122 to 20722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,200 DEBUG Processing 429/668 atomic regions from SNP 128448 to 129048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,202 DEBUG Processing 455/696 atomic regions from SNP 136210 to 136810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,242 DEBUG Processing 149/651 atomic regions from SNP 44520 to 45120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,278 DEBUG Processing 69/589 atomic regions from SNP 20422 to 21022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,410 DEBUG Processing 430/668 atomic regions from SNP 128748 to 129348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,431 DEBUG Processing 456/696 atomic regions from SNP 136510 to 137110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,482 DEBUG Processing 150/651 atomic regions from SNP 44820 to 45420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,505 DEBUG Processing 70/589 atomic regions from SNP 20722 to 21322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,617 DEBUG Processing 431/668 atomic regions from SNP 129048 to 129648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,658 DEBUG Processing 457/696 atomic regions from SNP 136810 to 137410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,720 DEBUG Processing 151/651 atomic regions from SNP 45120 to 45720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,732 DEBUG Processing 71/589 atomic regions from SNP 21022 to 21622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,825 DEBUG Processing 432/668 atomic regions from SNP 129348 to 129948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,888 DEBUG Processing 458/696 atomic regions from SNP 137110 to 137710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,960 DEBUG Processing 72/589 atomic regions from SNP 21322 to 21922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,968 DEBUG Processing 152/651 atomic regions from SNP 45420 to 46020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,035 DEBUG Processing 433/668 atomic regions from SNP 129648 to 130248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,113 DEBUG Processing 459/696 atomic regions from SNP 137410 to 138010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,185 DEBUG Processing 73/589 atomic regions from SNP 21622 to 22222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,221 DEBUG Processing 153/651 atomic regions from SNP 45720 to 46320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,245 DEBUG Processing 434/668 atomic regions from SNP 129948 to 130548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,338 DEBUG Processing 460/696 atomic regions from SNP 137710 to 138310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,411 DEBUG Processing 74/589 atomic regions from SNP 21922 to 22522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,451 DEBUG Processing 154/651 atomic regions from SNP 46020 to 46620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,455 DEBUG Processing 435/668 atomic regions from SNP 130248 to 130848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,589 DEBUG Processing 461/696 atomic regions from SNP 138010 to 138610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,639 DEBUG Processing 75/589 atomic regions from SNP 22222 to 22822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,670 DEBUG Processing 436/668 atomic regions from SNP 130548 to 131148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,683 DEBUG Processing 155/651 atomic regions from SNP 46320 to 46920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,835 DEBUG Processing 462/696 atomic regions from SNP 138310 to 138910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,867 DEBUG Processing 76/589 atomic regions from SNP 22522 to 23122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,886 DEBUG Processing 437/668 atomic regions from SNP 130848 to 131448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,914 DEBUG Processing 156/651 atomic regions from SNP 46620 to 47220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,093 DEBUG Processing 463/696 atomic regions from SNP 138610 to 139210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,095 DEBUG Processing 77/589 atomic regions from SNP 22822 to 23422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,103 DEBUG Processing 438/668 atomic regions from SNP 131148 to 131748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,144 DEBUG Processing 157/651 atomic regions from SNP 46920 to 47520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,336 DEBUG Processing 78/589 atomic regions from SNP 23122 to 23722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,342 DEBUG Processing 439/668 atomic regions from SNP 131448 to 132048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,348 DEBUG Processing 464/696 atomic regions from SNP 138910 to 139510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,374 DEBUG Processing 158/651 atomic regions from SNP 47220 to 47820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,568 DEBUG Processing 440/668 atomic regions from SNP 131748 to 132348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,574 DEBUG Processing 79/589 atomic regions from SNP 23422 to 24022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,584 DEBUG Processing 465/696 atomic regions from SNP 139210 to 139810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,605 DEBUG Processing 159/651 atomic regions from SNP 47520 to 48120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,784 DEBUG Processing 441/668 atomic regions from SNP 132048 to 132648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,805 DEBUG Processing 80/589 atomic regions from SNP 23722 to 24322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,822 DEBUG Processing 466/696 atomic regions from SNP 139510 to 140110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,839 DEBUG Processing 160/651 atomic regions from SNP 47820 to 48420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,999 DEBUG Processing 442/668 atomic regions from SNP 132348 to 132948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,036 DEBUG Processing 81/589 atomic regions from SNP 24022 to 24622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,067 DEBUG Processing 467/696 atomic regions from SNP 139810 to 140410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,083 DEBUG Processing 161/651 atomic regions from SNP 48120 to 48720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,236 DEBUG Processing 443/668 atomic regions from SNP 132648 to 133248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,263 DEBUG Processing 82/589 atomic regions from SNP 24322 to 24922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,317 DEBUG Processing 468/696 atomic regions from SNP 140110 to 140710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,317 DEBUG Processing 162/651 atomic regions from SNP 48420 to 49020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,479 DEBUG Processing 83/589 atomic regions from SNP 24622 to 25222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,482 DEBUG Processing 444/668 atomic regions from SNP 132948 to 133548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,552 DEBUG Processing 163/651 atomic regions from SNP 48720 to 49320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,561 DEBUG Processing 469/696 atomic regions from SNP 140410 to 141010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,703 DEBUG Processing 84/589 atomic regions from SNP 24922 to 25522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,716 DEBUG Processing 445/668 atomic regions from SNP 133248 to 133848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,787 DEBUG Processing 164/651 atomic regions from SNP 49020 to 49620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,796 DEBUG Processing 470/696 atomic regions from SNP 140710 to 141310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,917 DEBUG Processing 85/589 atomic regions from SNP 25222 to 25822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,928 DEBUG Processing 446/668 atomic regions from SNP 133548 to 134148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,016 DEBUG Processing 165/651 atomic regions from SNP 49320 to 49920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,036 DEBUG Processing 471/696 atomic regions from SNP 141010 to 141610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,140 DEBUG Processing 86/589 atomic regions from SNP 25522 to 26122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,145 DEBUG Processing 447/668 atomic regions from SNP 133848 to 134448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,243 DEBUG Processing 166/651 atomic regions from SNP 49620 to 50220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,291 DEBUG Processing 472/696 atomic regions from SNP 141310 to 141910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,360 DEBUG Processing 87/589 atomic regions from SNP 25822 to 26422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,364 DEBUG Processing 448/668 atomic regions from SNP 134148 to 134748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,463 DEBUG Processing 167/651 atomic regions from SNP 49920 to 50520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,548 DEBUG Processing 473/696 atomic regions from SNP 141610 to 142210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,576 DEBUG Processing 449/668 atomic regions from SNP 134448 to 135048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,578 DEBUG Processing 88/589 atomic regions from SNP 26122 to 26722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,689 DEBUG Processing 168/651 atomic regions from SNP 50220 to 50820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,786 DEBUG Processing 450/668 atomic regions from SNP 134748 to 135348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,793 DEBUG Processing 474/696 atomic regions from SNP 141910 to 142510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,798 DEBUG Processing 89/589 atomic regions from SNP 26422 to 27022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,907 DEBUG Processing 169/651 atomic regions from SNP 50520 to 51120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,004 DEBUG Processing 451/668 atomic regions from SNP 135048 to 135648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,016 DEBUG Processing 90/589 atomic regions from SNP 26722 to 27322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,029 DEBUG Processing 475/696 atomic regions from SNP 142210 to 142810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,119 DEBUG Processing 170/651 atomic regions from SNP 50820 to 51420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,220 DEBUG Processing 452/668 atomic regions from SNP 135348 to 135948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,241 DEBUG Processing 91/589 atomic regions from SNP 27022 to 27622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,288 DEBUG Processing 476/696 atomic regions from SNP 142510 to 143110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,345 DEBUG Processing 171/651 atomic regions from SNP 51120 to 51720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,437 DEBUG Processing 453/668 atomic regions from SNP 135648 to 136248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,463 DEBUG Processing 92/589 atomic regions from SNP 27322 to 27922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,514 DEBUG Processing 477/696 atomic regions from SNP 142810 to 143410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,569 DEBUG Processing 172/651 atomic regions from SNP 51420 to 52020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,649 DEBUG Processing 454/668 atomic regions from SNP 135948 to 136548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,686 DEBUG Processing 93/589 atomic regions from SNP 27622 to 28222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,746 DEBUG Processing 478/696 atomic regions from SNP 143110 to 143710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,799 DEBUG Processing 173/651 atomic regions from SNP 51720 to 52320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,872 DEBUG Processing 455/668 atomic regions from SNP 136248 to 136848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,910 DEBUG Processing 94/589 atomic regions from SNP 27922 to 28522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,002 DEBUG Processing 479/696 atomic regions from SNP 143410 to 144010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,026 DEBUG Processing 174/651 atomic regions from SNP 52020 to 52620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,127 DEBUG Processing 456/668 atomic regions from SNP 136548 to 137148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,135 DEBUG Processing 95/589 atomic regions from SNP 28222 to 28822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,243 DEBUG Processing 480/696 atomic regions from SNP 143710 to 144310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,258 DEBUG Processing 175/651 atomic regions from SNP 52320 to 52920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,352 DEBUG Processing 96/589 atomic regions from SNP 28522 to 29122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,353 DEBUG Processing 457/668 atomic regions from SNP 136848 to 137448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,470 DEBUG Processing 481/696 atomic regions from SNP 144010 to 144610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,487 DEBUG Processing 176/651 atomic regions from SNP 52620 to 53220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,571 DEBUG Processing 97/589 atomic regions from SNP 28822 to 29422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,576 DEBUG Processing 458/668 atomic regions from SNP 137148 to 137748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,700 DEBUG Processing 482/696 atomic regions from SNP 144310 to 144910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,714 DEBUG Processing 177/651 atomic regions from SNP 52920 to 53520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,798 DEBUG Processing 98/589 atomic regions from SNP 29122 to 29722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,799 DEBUG Processing 459/668 atomic regions from SNP 137448 to 138048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,940 DEBUG Processing 483/696 atomic regions from SNP 144610 to 145210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,946 DEBUG Processing 178/651 atomic regions from SNP 53220 to 53820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,020 DEBUG Processing 460/668 atomic regions from SNP 137748 to 138348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,026 DEBUG Processing 99/589 atomic regions from SNP 29422 to 30022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,180 DEBUG Processing 484/696 atomic regions from SNP 144910 to 145510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,187 DEBUG Processing 179/651 atomic regions from SNP 53520 to 54120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,238 DEBUG Processing 461/668 atomic regions from SNP 138048 to 138648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,263 DEBUG Processing 100/589 atomic regions from SNP 29722 to 30322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,411 DEBUG Processing 485/696 atomic regions from SNP 145210 to 145810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,421 DEBUG Processing 180/651 atomic regions from SNP 53820 to 54420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,453 DEBUG Processing 462/668 atomic regions from SNP 138348 to 138948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,489 DEBUG Processing 101/589 atomic regions from SNP 30022 to 30622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,660 DEBUG Processing 486/696 atomic regions from SNP 145510 to 146110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,672 DEBUG Processing 181/651 atomic regions from SNP 54120 to 54720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,677 DEBUG Processing 463/668 atomic regions from SNP 138648 to 139248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,732 DEBUG Processing 102/589 atomic regions from SNP 30322 to 30922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,896 DEBUG Processing 464/668 atomic regions from SNP 138948 to 139548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,901 DEBUG Processing 487/696 atomic regions from SNP 145810 to 146410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,908 DEBUG Processing 182/651 atomic regions from SNP 54420 to 55020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,964 DEBUG Processing 103/589 atomic regions from SNP 30622 to 31222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,112 DEBUG Processing 465/668 atomic regions from SNP 139248 to 139848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,137 DEBUG Processing 488/696 atomic regions from SNP 146110 to 146710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,140 DEBUG Processing 183/651 atomic regions from SNP 54720 to 55320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,196 DEBUG Processing 104/589 atomic regions from SNP 30922 to 31522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,333 DEBUG Processing 466/668 atomic regions from SNP 139548 to 140148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,376 DEBUG Processing 184/651 atomic regions from SNP 55020 to 55620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,399 DEBUG Processing 489/696 atomic regions from SNP 146410 to 147010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,423 DEBUG Processing 105/589 atomic regions from SNP 31222 to 31822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,555 DEBUG Processing 467/668 atomic regions from SNP 139848 to 140448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,607 DEBUG Processing 185/651 atomic regions from SNP 55320 to 55920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,652 DEBUG Processing 106/589 atomic regions from SNP 31522 to 32122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,659 DEBUG Processing 490/696 atomic regions from SNP 146710 to 147310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,779 DEBUG Processing 468/668 atomic regions from SNP 140148 to 140748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,838 DEBUG Processing 186/651 atomic regions from SNP 55620 to 56220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,883 DEBUG Processing 107/589 atomic regions from SNP 31822 to 32422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,932 DEBUG Processing 491/696 atomic regions from SNP 147010 to 147610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,004 DEBUG Processing 469/668 atomic regions from SNP 140448 to 141048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,066 DEBUG Processing 187/651 atomic regions from SNP 55920 to 56520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,108 DEBUG Processing 108/589 atomic regions from SNP 32122 to 32722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,179 DEBUG Processing 492/696 atomic regions from SNP 147310 to 147910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,225 DEBUG Processing 470/668 atomic regions from SNP 140748 to 141348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,297 DEBUG Processing 188/651 atomic regions from SNP 56220 to 56820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,337 DEBUG Processing 109/589 atomic regions from SNP 32422 to 33022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,437 DEBUG Processing 493/696 atomic regions from SNP 147610 to 148210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,440 DEBUG Processing 471/668 atomic regions from SNP 141048 to 141648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,534 DEBUG Processing 189/651 atomic regions from SNP 56520 to 57120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,570 DEBUG Processing 110/589 atomic regions from SNP 32722 to 33322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,656 DEBUG Processing 472/668 atomic regions from SNP 141348 to 141948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,684 DEBUG Processing 494/696 atomic regions from SNP 147910 to 148510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,771 DEBUG Processing 190/651 atomic regions from SNP 56820 to 57420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,799 DEBUG Processing 111/589 atomic regions from SNP 33022 to 33622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,872 DEBUG Processing 473/668 atomic regions from SNP 141648 to 142248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,917 DEBUG Processing 495/696 atomic regions from SNP 148210 to 148810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,018 DEBUG Processing 112/589 atomic regions from SNP 33322 to 33922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,031 DEBUG Processing 191/651 atomic regions from SNP 57120 to 57720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,092 DEBUG Processing 474/668 atomic regions from SNP 141948 to 142548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,142 DEBUG Processing 496/696 atomic regions from SNP 148510 to 149110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,242 DEBUG Processing 113/589 atomic regions from SNP 33622 to 34222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,264 DEBUG Processing 192/651 atomic regions from SNP 57420 to 58020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,306 DEBUG Processing 475/668 atomic regions from SNP 142248 to 142848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,373 DEBUG Processing 497/696 atomic regions from SNP 148810 to 149410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,468 DEBUG Processing 114/589 atomic regions from SNP 33922 to 34522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,488 DEBUG Processing 193/651 atomic regions from SNP 57720 to 58320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,524 DEBUG Processing 476/668 atomic regions from SNP 142548 to 143148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,613 DEBUG Processing 498/696 atomic regions from SNP 149110 to 149710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,694 DEBUG Processing 115/589 atomic regions from SNP 34222 to 34822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,719 DEBUG Processing 194/651 atomic regions from SNP 58020 to 58620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,742 DEBUG Processing 477/668 atomic regions from SNP 142848 to 143448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,856 DEBUG Processing 499/696 atomic regions from SNP 149410 to 150010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,912 DEBUG Processing 116/589 atomic regions from SNP 34522 to 35122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,943 DEBUG Processing 195/651 atomic regions from SNP 58320 to 58920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,956 DEBUG Processing 478/668 atomic regions from SNP 143148 to 143748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,097 DEBUG Processing 500/696 atomic regions from SNP 149710 to 150310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,135 DEBUG Processing 117/589 atomic regions from SNP 34822 to 35422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,170 DEBUG Processing 196/651 atomic regions from SNP 58620 to 59220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,184 DEBUG Processing 479/668 atomic regions from SNP 143448 to 144048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,331 DEBUG Processing 501/696 atomic regions from SNP 150010 to 150610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,357 DEBUG Processing 118/589 atomic regions from SNP 35122 to 35722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,403 DEBUG Processing 197/651 atomic regions from SNP 58920 to 59520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,404 DEBUG Processing 480/668 atomic regions from SNP 143748 to 144348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,565 DEBUG Processing 502/696 atomic regions from SNP 150310 to 150910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,581 DEBUG Processing 119/589 atomic regions from SNP 35422 to 36022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,626 DEBUG Processing 481/668 atomic regions from SNP 144048 to 144648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,632 DEBUG Processing 198/651 atomic regions from SNP 59220 to 59820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,793 DEBUG Processing 503/696 atomic regions from SNP 150610 to 151210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,802 DEBUG Processing 120/589 atomic regions from SNP 35722 to 36322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,848 DEBUG Processing 482/668 atomic regions from SNP 144348 to 144948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,864 DEBUG Processing 199/651 atomic regions from SNP 59520 to 60120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,022 DEBUG Processing 504/696 atomic regions from SNP 150910 to 151510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,027 DEBUG Processing 121/589 atomic regions from SNP 36022 to 36622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,069 DEBUG Processing 483/668 atomic regions from SNP 144648 to 145248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,093 DEBUG Processing 200/651 atomic regions from SNP 59820 to 60420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,243 DEBUG Processing 122/589 atomic regions from SNP 36322 to 36922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,245 DEBUG Processing 505/696 atomic regions from SNP 151210 to 151810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,291 DEBUG Processing 484/668 atomic regions from SNP 144948 to 145548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,315 DEBUG Processing 201/651 atomic regions from SNP 60120 to 60720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,464 DEBUG Processing 123/589 atomic regions from SNP 36622 to 37222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,472 DEBUG Processing 506/696 atomic regions from SNP 151510 to 152110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,518 DEBUG Processing 485/668 atomic regions from SNP 145248 to 145848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,545 DEBUG Processing 202/651 atomic regions from SNP 60420 to 61020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,683 DEBUG Processing 124/589 atomic regions from SNP 36922 to 37522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,699 DEBUG Processing 507/696 atomic regions from SNP 151810 to 152410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,743 DEBUG Processing 486/668 atomic regions from SNP 145548 to 146148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,773 DEBUG Processing 203/651 atomic regions from SNP 60720 to 61320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,901 DEBUG Processing 125/589 atomic regions from SNP 37222 to 37822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,932 DEBUG Processing 508/696 atomic regions from SNP 152110 to 152710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,972 DEBUG Processing 487/668 atomic regions from SNP 145848 to 146448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,001 DEBUG Processing 204/651 atomic regions from SNP 61020 to 61620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,122 DEBUG Processing 126/589 atomic regions from SNP 37522 to 38122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,165 DEBUG Processing 509/696 atomic regions from SNP 152410 to 153010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,203 DEBUG Processing 488/668 atomic regions from SNP 146148 to 146748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,228 DEBUG Processing 205/651 atomic regions from SNP 61320 to 61920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,341 DEBUG Processing 127/589 atomic regions from SNP 37822 to 38422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,398 DEBUG Processing 510/696 atomic regions from SNP 152710 to 153310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,438 DEBUG Processing 489/668 atomic regions from SNP 146448 to 147048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,458 DEBUG Processing 206/651 atomic regions from SNP 61620 to 62220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,564 DEBUG Processing 128/589 atomic regions from SNP 38122 to 38722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,638 DEBUG Processing 511/696 atomic regions from SNP 153010 to 153610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,673 DEBUG Processing 490/668 atomic regions from SNP 146748 to 147348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,695 DEBUG Processing 207/651 atomic regions from SNP 61920 to 62520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,794 DEBUG Processing 129/589 atomic regions from SNP 38422 to 39022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,860 DEBUG Segmenting atomic regions: 2025-01-31 09:55:28,875 DEBUG Processing 512/696 atomic regions from SNP 153310 to 153910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,901 DEBUG Processing 491/668 atomic regions from SNP 147048 to 147648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,920 DEBUG Processing 208/651 atomic regions from SNP 62220 to 62820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,939 DEBUG Processing 1/553 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,011 DEBUG Processing 130/589 atomic regions from SNP 38722 to 39322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,110 DEBUG Processing 513/696 atomic regions from SNP 153610 to 154210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,136 DEBUG Processing 492/668 atomic regions from SNP 147348 to 147948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,152 DEBUG Processing 209/651 atomic regions from SNP 62520 to 63120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,154 DEBUG Processing 2/553 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,232 DEBUG Processing 131/589 atomic regions from SNP 39022 to 39622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,345 DEBUG Processing 514/696 atomic regions from SNP 153910 to 154510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,371 DEBUG Processing 493/668 atomic regions from SNP 147648 to 148248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,376 DEBUG Processing 3/553 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,383 DEBUG Processing 210/651 atomic regions from SNP 62820 to 63420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,457 DEBUG Processing 132/589 atomic regions from SNP 39322 to 39922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,585 DEBUG Processing 515/696 atomic regions from SNP 154210 to 154810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,608 DEBUG Processing 494/668 atomic regions from SNP 147948 to 148548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,610 DEBUG Processing 4/553 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,623 DEBUG Processing 211/651 atomic regions from SNP 63120 to 63720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,683 DEBUG Processing 133/589 atomic regions from SNP 39622 to 40222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,821 DEBUG Processing 516/696 atomic regions from SNP 154510 to 155110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,832 DEBUG Processing 5/553 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,840 DEBUG Processing 495/668 atomic regions from SNP 148248 to 148848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,863 DEBUG Processing 212/651 atomic regions from SNP 63420 to 64020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,909 DEBUG Processing 134/589 atomic regions from SNP 39922 to 40522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,054 DEBUG Processing 517/696 atomic regions from SNP 154810 to 155410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,059 DEBUG Processing 6/553 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,097 DEBUG Processing 496/668 atomic regions from SNP 148548 to 149148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,099 DEBUG Processing 213/651 atomic regions from SNP 63720 to 64320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,136 DEBUG Processing 135/589 atomic regions from SNP 40222 to 40822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,293 DEBUG Processing 518/696 atomic regions from SNP 155110 to 155710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,299 DEBUG Processing 7/553 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,341 DEBUG Processing 497/668 atomic regions from SNP 148848 to 149448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,344 DEBUG Processing 214/651 atomic regions from SNP 64020 to 64620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,364 DEBUG Processing 136/589 atomic regions from SNP 40522 to 41122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,528 DEBUG Processing 519/696 atomic regions from SNP 155410 to 156010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,545 DEBUG Processing 8/553 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,582 DEBUG Processing 215/651 atomic regions from SNP 64320 to 64920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,589 DEBUG Processing 498/668 atomic regions from SNP 149148 to 149748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,595 DEBUG Processing 137/589 atomic regions from SNP 40822 to 41422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,764 DEBUG Processing 520/696 atomic regions from SNP 155710 to 156310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,788 DEBUG Processing 9/553 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,819 DEBUG Processing 216/651 atomic regions from SNP 64620 to 65220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,826 DEBUG Processing 138/589 atomic regions from SNP 41122 to 41722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,834 DEBUG Processing 499/668 atomic regions from SNP 149448 to 150048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,993 DEBUG Processing 521/696 atomic regions from SNP 156010 to 156610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,030 DEBUG Processing 10/553 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,057 DEBUG Processing 217/651 atomic regions from SNP 64920 to 65520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,058 DEBUG Processing 139/589 atomic regions from SNP 41422 to 42022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,084 DEBUG Processing 500/668 atomic regions from SNP 149748 to 150348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,232 DEBUG Processing 522/696 atomic regions from SNP 156310 to 156910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,267 DEBUG Processing 11/553 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,314 DEBUG Processing 140/589 atomic regions from SNP 41722 to 42322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,318 DEBUG Processing 218/651 atomic regions from SNP 65220 to 65820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,350 DEBUG Processing 501/668 atomic regions from SNP 150048 to 150648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,473 DEBUG Processing 523/696 atomic regions from SNP 156610 to 157210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,506 DEBUG Processing 12/553 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,556 DEBUG Processing 141/589 atomic regions from SNP 42022 to 42622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,565 DEBUG Processing 219/651 atomic regions from SNP 65520 to 66120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,577 DEBUG Processing 502/668 atomic regions from SNP 150348 to 150948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,704 DEBUG Processing 524/696 atomic regions from SNP 156910 to 157510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,716 DEBUG Processing 13/553 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,800 DEBUG Processing 220/651 atomic regions from SNP 65820 to 66420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,806 DEBUG Processing 503/668 atomic regions from SNP 150648 to 151248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,807 DEBUG Processing 142/589 atomic regions from SNP 42322 to 42922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,924 DEBUG Processing 14/553 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,930 DEBUG Processing 525/696 atomic regions from SNP 157210 to 157810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,033 DEBUG Processing 504/668 atomic regions from SNP 150948 to 151548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,039 DEBUG Processing 221/651 atomic regions from SNP 66120 to 66720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,049 DEBUG Processing 143/589 atomic regions from SNP 42622 to 43222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,131 DEBUG Processing 15/553 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,163 DEBUG Processing 526/696 atomic regions from SNP 157510 to 158110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,261 DEBUG Processing 505/668 atomic regions from SNP 151248 to 151848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,276 DEBUG Processing 222/651 atomic regions from SNP 66420 to 67020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,300 DEBUG Processing 144/589 atomic regions from SNP 42922 to 43522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,344 DEBUG Processing 16/553 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,395 DEBUG Processing 527/696 atomic regions from SNP 157810 to 158410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,515 DEBUG Processing 223/651 atomic regions from SNP 66720 to 67320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,518 DEBUG Processing 506/668 atomic regions from SNP 151548 to 152148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,533 DEBUG Processing 145/589 atomic regions from SNP 43222 to 43822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,575 DEBUG Processing 17/553 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,657 DEBUG Processing 528/696 atomic regions from SNP 158110 to 158710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,761 DEBUG Processing 224/651 atomic regions from SNP 67020 to 67620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,778 DEBUG Processing 146/589 atomic regions from SNP 43522 to 44122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,791 DEBUG Processing 507/668 atomic regions from SNP 151848 to 152448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,804 DEBUG Processing 18/553 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,931 DEBUG Processing 529/696 atomic regions from SNP 158410 to 159010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,013 DEBUG Processing 225/651 atomic regions from SNP 67320 to 67920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,024 DEBUG Processing 147/589 atomic regions from SNP 43822 to 44422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,038 DEBUG Processing 19/553 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,049 DEBUG Processing 508/668 atomic regions from SNP 152148 to 152748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,198 DEBUG Processing 530/696 atomic regions from SNP 158710 to 159310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,283 DEBUG Processing 226/651 atomic regions from SNP 67620 to 68220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,286 DEBUG Processing 20/553 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,296 DEBUG Processing 148/589 atomic regions from SNP 44122 to 44722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,326 DEBUG Processing 509/668 atomic regions from SNP 152448 to 153048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,487 DEBUG Processing 531/696 atomic regions from SNP 159010 to 159610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,542 DEBUG Processing 21/553 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,587 DEBUG Processing 149/589 atomic regions from SNP 44422 to 45022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,615 DEBUG Processing 227/651 atomic regions from SNP 67920 to 68520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,630 DEBUG Processing 510/668 atomic regions from SNP 152748 to 153348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,825 DEBUG Processing 532/696 atomic regions from SNP 159310 to 159910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,890 DEBUG Processing 22/553 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,975 DEBUG Processing 150/589 atomic regions from SNP 44722 to 45322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,006 DEBUG Processing 228/651 atomic regions from SNP 68220 to 68820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,037 DEBUG Processing 511/668 atomic regions from SNP 153048 to 153648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,255 DEBUG Processing 23/553 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,263 DEBUG Processing 533/696 atomic regions from SNP 159610 to 160210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,298 DEBUG Processing 151/589 atomic regions from SNP 45022 to 45622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,334 DEBUG Processing 229/651 atomic regions from SNP 68520 to 69120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,335 DEBUG Processing 512/668 atomic regions from SNP 153348 to 153948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,476 DEBUG Processing 24/553 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,541 DEBUG Processing 534/696 atomic regions from SNP 159910 to 160510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,545 DEBUG Processing 152/589 atomic regions from SNP 45322 to 45922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,582 DEBUG Processing 513/668 atomic regions from SNP 153648 to 154248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,594 DEBUG Processing 230/651 atomic regions from SNP 68820 to 69420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,684 DEBUG Processing 25/553 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,776 DEBUG Processing 153/589 atomic regions from SNP 45622 to 46222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,805 DEBUG Processing 535/696 atomic regions from SNP 160210 to 160810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,809 DEBUG Processing 514/668 atomic regions from SNP 153948 to 154548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,834 DEBUG Processing 231/651 atomic regions from SNP 69120 to 69720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,884 DEBUG Processing 26/553 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,012 DEBUG Processing 154/589 atomic regions from SNP 45922 to 46522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,028 DEBUG Processing 515/668 atomic regions from SNP 154248 to 154848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,065 DEBUG Processing 536/696 atomic regions from SNP 160510 to 161110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,070 DEBUG Processing 232/651 atomic regions from SNP 69420 to 70020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,084 DEBUG Processing 27/553 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,245 DEBUG Processing 155/589 atomic regions from SNP 46222 to 46822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,247 DEBUG Processing 516/668 atomic regions from SNP 154548 to 155148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,286 DEBUG Processing 28/553 atomic regions from SNP 8127 to 8727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,312 DEBUG Processing 233/651 atomic regions from SNP 69720 to 70320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,321 DEBUG Processing 537/696 atomic regions from SNP 160810 to 161410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,462 DEBUG Processing 517/668 atomic regions from SNP 154848 to 155448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,473 DEBUG Processing 156/589 atomic regions from SNP 46522 to 47122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,485 DEBUG Processing 29/553 atomic regions from SNP 8427 to 9027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,556 DEBUG Processing 234/651 atomic regions from SNP 70020 to 70620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,588 DEBUG Processing 538/696 atomic regions from SNP 161110 to 161710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,681 DEBUG Processing 518/668 atomic regions from SNP 155148 to 155748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,685 DEBUG Processing 30/553 atomic regions from SNP 8727 to 9327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,701 DEBUG Processing 157/589 atomic regions from SNP 46822 to 47422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,797 DEBUG Processing 235/651 atomic regions from SNP 70320 to 70920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,859 DEBUG Processing 539/696 atomic regions from SNP 161410 to 162010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,900 DEBUG Processing 31/553 atomic regions from SNP 9027 to 9627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,915 DEBUG Processing 519/668 atomic regions from SNP 155448 to 156048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,932 DEBUG Processing 158/589 atomic regions from SNP 47122 to 47722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,027 DEBUG Processing 236/651 atomic regions from SNP 70620 to 71220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,117 DEBUG Processing 540/696 atomic regions from SNP 161710 to 162310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,131 DEBUG Processing 32/553 atomic regions from SNP 9327 to 9927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,141 DEBUG Processing 520/668 atomic regions from SNP 155748 to 156348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,166 DEBUG Processing 159/589 atomic regions from SNP 47422 to 48022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,277 DEBUG Processing 237/651 atomic regions from SNP 70920 to 71520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,374 DEBUG Processing 541/696 atomic regions from SNP 162010 to 162610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,377 DEBUG Processing 33/553 atomic regions from SNP 9627 to 10227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,380 DEBUG Processing 521/668 atomic regions from SNP 156048 to 156648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,399 DEBUG Processing 160/589 atomic regions from SNP 47722 to 48322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,520 DEBUG Processing 238/651 atomic regions from SNP 71220 to 71820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,581 DEBUG Processing 34/553 atomic regions from SNP 9927 to 10527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,602 DEBUG Processing 522/668 atomic regions from SNP 156348 to 156948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,615 DEBUG Processing 542/696 atomic regions from SNP 162310 to 162910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,619 DEBUG Processing 161/589 atomic regions from SNP 48022 to 48622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,748 DEBUG Processing 239/651 atomic regions from SNP 71520 to 72120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,779 DEBUG Processing 35/553 atomic regions from SNP 10227 to 10827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,823 DEBUG Processing 523/668 atomic regions from SNP 156648 to 157248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,843 DEBUG Processing 162/589 atomic regions from SNP 48322 to 48922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,846 DEBUG Processing 543/696 atomic regions from SNP 162610 to 163210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,972 DEBUG Processing 240/651 atomic regions from SNP 71820 to 72420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,978 DEBUG Processing 36/553 atomic regions from SNP 10527 to 11127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,072 DEBUG Processing 524/668 atomic regions from SNP 156948 to 157548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,077 DEBUG Processing 163/589 atomic regions from SNP 48622 to 49222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,088 DEBUG Processing 544/696 atomic regions from SNP 162910 to 163510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,192 DEBUG Processing 37/553 atomic regions from SNP 10827 to 11427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,208 DEBUG Processing 241/651 atomic regions from SNP 72120 to 72720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,309 DEBUG Processing 164/589 atomic regions from SNP 48922 to 49522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,335 DEBUG Processing 525/668 atomic regions from SNP 157248 to 157848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,352 DEBUG Processing 545/696 atomic regions from SNP 163210 to 163810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,401 DEBUG Processing 38/553 atomic regions from SNP 11127 to 11727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,444 DEBUG Processing 242/651 atomic regions from SNP 72420 to 73020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,557 DEBUG Processing 165/589 atomic regions from SNP 49222 to 49822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,574 DEBUG Processing 526/668 atomic regions from SNP 157548 to 158148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,619 DEBUG Processing 39/553 atomic regions from SNP 11427 to 12027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,625 DEBUG Processing 546/696 atomic regions from SNP 163510 to 164110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,684 DEBUG Processing 243/651 atomic regions from SNP 72720 to 73320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,815 DEBUG Processing 166/589 atomic regions from SNP 49522 to 50122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,820 DEBUG Processing 527/668 atomic regions from SNP 157848 to 158448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,834 DEBUG Processing 40/553 atomic regions from SNP 11727 to 12327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,917 DEBUG Processing 547/696 atomic regions from SNP 163810 to 164410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,928 DEBUG Processing 244/651 atomic regions from SNP 73020 to 73620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,041 DEBUG Processing 41/553 atomic regions from SNP 12027 to 12627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,050 DEBUG Processing 528/668 atomic regions from SNP 158148 to 158748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,051 DEBUG Processing 167/589 atomic regions from SNP 49822 to 50422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,164 DEBUG Processing 245/651 atomic regions from SNP 73320 to 73920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,188 DEBUG Processing 548/696 atomic regions from SNP 164110 to 164710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,252 DEBUG Processing 42/553 atomic regions from SNP 12327 to 12927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,285 DEBUG Processing 529/668 atomic regions from SNP 158448 to 159048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,292 DEBUG Processing 168/589 atomic regions from SNP 50122 to 50722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,418 DEBUG Processing 246/651 atomic regions from SNP 73620 to 74220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,466 DEBUG Processing 43/553 atomic regions from SNP 12627 to 13227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,475 DEBUG Processing 549/696 atomic regions from SNP 164410 to 165010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,523 DEBUG Processing 530/668 atomic regions from SNP 158748 to 159348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,543 DEBUG Processing 169/589 atomic regions from SNP 50422 to 51022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,676 DEBUG Processing 247/651 atomic regions from SNP 73920 to 74520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,706 DEBUG Processing 44/553 atomic regions from SNP 12927 to 13527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,765 DEBUG Processing 531/668 atomic regions from SNP 159048 to 159648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,784 DEBUG Processing 550/696 atomic regions from SNP 164710 to 165310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,814 DEBUG Processing 170/589 atomic regions from SNP 50722 to 51322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,961 DEBUG Processing 248/651 atomic regions from SNP 74220 to 74820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,985 DEBUG Processing 45/553 atomic regions from SNP 13227 to 13827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,005 DEBUG Processing 532/668 atomic regions from SNP 159348 to 159948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,103 DEBUG Processing 171/589 atomic regions from SNP 51022 to 51622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,118 DEBUG Processing 551/696 atomic regions from SNP 165010 to 165610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,242 DEBUG Processing 46/553 atomic regions from SNP 13527 to 14127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,255 DEBUG Processing 249/651 atomic regions from SNP 74520 to 75120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,300 DEBUG Processing 533/668 atomic regions from SNP 159648 to 160248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,397 DEBUG Processing 172/589 atomic regions from SNP 51322 to 51922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,437 DEBUG Processing 552/696 atomic regions from SNP 165310 to 165910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,484 DEBUG Processing 47/553 atomic regions from SNP 13827 to 14427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,551 DEBUG Processing 250/651 atomic regions from SNP 74820 to 75420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,593 DEBUG Processing 534/668 atomic regions from SNP 159948 to 160548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,694 DEBUG Processing 173/589 atomic regions from SNP 51622 to 52222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,762 DEBUG Processing 553/696 atomic regions from SNP 165610 to 166210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,811 DEBUG Processing 48/553 atomic regions from SNP 14127 to 14727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,867 DEBUG Processing 251/651 atomic regions from SNP 75120 to 75720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,887 DEBUG Processing 535/668 atomic regions from SNP 160248 to 160848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,935 DEBUG Processing 174/589 atomic regions from SNP 51922 to 52522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,016 DEBUG Processing 554/696 atomic regions from SNP 165910 to 166510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,028 DEBUG Processing 49/553 atomic regions from SNP 14427 to 15027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,118 DEBUG Processing 252/651 atomic regions from SNP 75420 to 76020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,137 DEBUG Processing 536/668 atomic regions from SNP 160548 to 161148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,180 DEBUG Processing 175/589 atomic regions from SNP 52222 to 52822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,231 DEBUG Processing 50/553 atomic regions from SNP 14727 to 15327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,286 DEBUG Processing 555/696 atomic regions from SNP 166210 to 166810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,361 DEBUG Processing 253/651 atomic regions from SNP 75720 to 76320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,368 DEBUG Processing 537/668 atomic regions from SNP 160848 to 161448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,421 DEBUG Processing 176/589 atomic regions from SNP 52522 to 53122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,438 DEBUG Processing 51/553 atomic regions from SNP 15027 to 15627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,579 DEBUG Processing 556/696 atomic regions from SNP 166510 to 167110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,608 DEBUG Processing 538/668 atomic regions from SNP 161148 to 161748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,617 DEBUG Processing 254/651 atomic regions from SNP 76020 to 76620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,649 DEBUG Processing 52/553 atomic regions from SNP 15327 to 15927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,669 DEBUG Processing 177/589 atomic regions from SNP 52822 to 53422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,838 DEBUG Processing 539/668 atomic regions from SNP 161448 to 162048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,858 DEBUG Processing 53/553 atomic regions from SNP 15627 to 16227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,867 DEBUG Processing 557/696 atomic regions from SNP 166810 to 167410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,895 DEBUG Processing 255/651 atomic regions from SNP 76320 to 76920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,920 DEBUG Processing 178/589 atomic regions from SNP 53122 to 53722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,080 DEBUG Processing 54/553 atomic regions from SNP 15927 to 16527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,113 DEBUG Processing 540/668 atomic regions from SNP 161748 to 162348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,185 DEBUG Processing 558/696 atomic regions from SNP 167110 to 167710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,204 DEBUG Processing 179/589 atomic regions from SNP 53422 to 54022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,218 DEBUG Processing 256/651 atomic regions from SNP 76620 to 77220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,316 DEBUG Processing 55/553 atomic regions from SNP 16227 to 16827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,431 DEBUG Processing 541/668 atomic regions from SNP 162048 to 162648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,467 DEBUG Processing 180/589 atomic regions from SNP 53722 to 54322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,476 DEBUG Processing 559/696 atomic regions from SNP 167410 to 168010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,489 DEBUG Processing 257/651 atomic regions from SNP 76920 to 77520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,515 DEBUG Processing 56/553 atomic regions from SNP 16527 to 17127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,696 DEBUG Processing 542/668 atomic regions from SNP 162348 to 162948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,733 DEBUG Processing 57/553 atomic regions from SNP 16827 to 17427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,733 DEBUG Processing 181/589 atomic regions from SNP 54022 to 54622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,755 DEBUG Processing 560/696 atomic regions from SNP 167710 to 168310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,756 DEBUG Processing 258/651 atomic regions from SNP 77220 to 77820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,946 DEBUG Processing 543/668 atomic regions from SNP 162648 to 163248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,994 DEBUG Processing 58/553 atomic regions from SNP 17127 to 17727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,030 DEBUG Processing 182/589 atomic regions from SNP 54322 to 54922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,042 DEBUG Processing 259/651 atomic regions from SNP 77520 to 78120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,046 DEBUG Processing 561/696 atomic regions from SNP 168010 to 168610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,198 DEBUG Processing 544/668 atomic regions from SNP 162948 to 163548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,245 DEBUG Processing 59/553 atomic regions from SNP 17427 to 18027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,344 DEBUG Processing 183/589 atomic regions from SNP 54622 to 55222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,382 DEBUG Processing 562/696 atomic regions from SNP 168310 to 168910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,388 DEBUG Processing 260/651 atomic regions from SNP 77820 to 78420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,495 DEBUG Processing 60/553 atomic regions from SNP 17727 to 18327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,518 DEBUG Processing 545/668 atomic regions from SNP 163248 to 163848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,627 DEBUG Processing 184/589 atomic regions from SNP 54922 to 55522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,671 DEBUG Processing 563/696 atomic regions from SNP 168610 to 169210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,696 DEBUG Processing 261/651 atomic regions from SNP 78120 to 78720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,756 DEBUG Processing 61/553 atomic regions from SNP 18027 to 18627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,835 DEBUG Processing 546/668 atomic regions from SNP 163548 to 164148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,918 DEBUG Processing 185/589 atomic regions from SNP 55222 to 55822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,985 DEBUG Processing 262/651 atomic regions from SNP 78420 to 79020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,985 DEBUG Processing 564/696 atomic regions from SNP 168910 to 169510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,031 DEBUG Processing 62/553 atomic regions from SNP 18327 to 18927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,145 DEBUG Processing 547/668 atomic regions from SNP 163848 to 164448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,229 DEBUG Processing 186/589 atomic regions from SNP 55522 to 56122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,293 DEBUG Processing 263/651 atomic regions from SNP 78720 to 79320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,302 DEBUG Processing 565/696 atomic regions from SNP 169210 to 169810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,312 DEBUG Processing 63/553 atomic regions from SNP 18627 to 19227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,462 DEBUG Processing 548/668 atomic regions from SNP 164148 to 164748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,527 DEBUG Processing 187/589 atomic regions from SNP 55822 to 56422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,564 DEBUG Processing 64/553 atomic regions from SNP 18927 to 19527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,574 DEBUG Processing 264/651 atomic regions from SNP 79020 to 79620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,597 DEBUG Processing 566/696 atomic regions from SNP 169510 to 170110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,747 DEBUG Processing 549/668 atomic regions from SNP 164448 to 165048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,801 DEBUG Processing 188/589 atomic regions from SNP 56122 to 56722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,825 DEBUG Processing 65/553 atomic regions from SNP 19227 to 19827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,865 DEBUG Processing 265/651 atomic regions from SNP 79320 to 79920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,904 DEBUG Processing 567/696 atomic regions from SNP 169810 to 170410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,989 DEBUG Processing 550/668 atomic regions from SNP 164748 to 165348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,070 DEBUG Processing 189/589 atomic regions from SNP 56422 to 57022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,108 DEBUG Processing 66/553 atomic regions from SNP 19527 to 20127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,201 DEBUG Processing 266/651 atomic regions from SNP 79620 to 80220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,250 DEBUG Processing 568/696 atomic regions from SNP 170110 to 170710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,263 DEBUG Processing 551/668 atomic regions from SNP 165048 to 165648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,337 DEBUG Processing 190/589 atomic regions from SNP 56722 to 57322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,379 DEBUG Processing 67/553 atomic regions from SNP 19827 to 20427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,512 DEBUG Processing 267/651 atomic regions from SNP 79920 to 80520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,546 DEBUG Processing 552/668 atomic regions from SNP 165348 to 165948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,558 DEBUG Processing 569/696 atomic regions from SNP 170410 to 171010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,602 DEBUG Processing 191/589 atomic regions from SNP 57022 to 57622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,603 DEBUG Processing 68/553 atomic regions from SNP 20127 to 20727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,793 DEBUG Processing 268/651 atomic regions from SNP 80220 to 80820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,825 DEBUG Processing 553/668 atomic regions from SNP 165648 to 166248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,862 DEBUG Processing 69/553 atomic regions from SNP 20427 to 21027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,875 DEBUG Processing 570/696 atomic regions from SNP 170710 to 171310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,912 DEBUG Processing 192/589 atomic regions from SNP 57322 to 57922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,085 DEBUG Processing 269/651 atomic regions from SNP 80520 to 81120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,121 DEBUG Processing 554/668 atomic regions from SNP 165948 to 166548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,140 DEBUG Processing 70/553 atomic regions from SNP 20727 to 21327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,210 DEBUG Processing 193/589 atomic regions from SNP 57622 to 58222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,216 DEBUG Processing 571/696 atomic regions from SNP 171010 to 171610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,364 DEBUG Processing 270/651 atomic regions from SNP 80820 to 81420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,427 DEBUG Processing 71/553 atomic regions from SNP 21027 to 21627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,452 DEBUG Processing 555/668 atomic regions from SNP 166248 to 166848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,557 DEBUG Processing 194/589 atomic regions from SNP 57922 to 58522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,605 DEBUG Processing 572/696 atomic regions from SNP 171310 to 171910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,639 DEBUG Processing 271/651 atomic regions from SNP 81120 to 81720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,653 DEBUG Processing 72/553 atomic regions from SNP 21327 to 21927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,740 DEBUG Processing 556/668 atomic regions from SNP 166548 to 167148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,893 DEBUG Processing 195/589 atomic regions from SNP 58222 to 58822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,942 DEBUG Processing 73/553 atomic regions from SNP 21627 to 22227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,965 DEBUG Processing 272/651 atomic regions from SNP 81420 to 82020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,968 DEBUG Processing 573/696 atomic regions from SNP 171610 to 172210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,058 DEBUG Processing 557/668 atomic regions from SNP 166848 to 167448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,224 DEBUG Processing 74/553 atomic regions from SNP 21927 to 22527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,225 DEBUG Processing 196/589 atomic regions from SNP 58522 to 59122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,285 DEBUG Processing 273/651 atomic regions from SNP 81720 to 82320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,309 DEBUG Processing 574/696 atomic regions from SNP 171910 to 172510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,344 DEBUG Processing 558/668 atomic regions from SNP 167148 to 167748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,492 DEBUG Processing 75/553 atomic regions from SNP 22227 to 22827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,545 DEBUG Processing 197/589 atomic regions from SNP 58822 to 59422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,608 DEBUG Processing 274/651 atomic regions from SNP 82020 to 82620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,627 DEBUG Processing 575/696 atomic regions from SNP 172210 to 172810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,649 DEBUG Processing 559/668 atomic regions from SNP 167448 to 168048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,757 DEBUG Processing 76/553 atomic regions from SNP 22527 to 23127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,825 DEBUG Processing 198/589 atomic regions from SNP 59122 to 59722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,931 DEBUG Processing 560/668 atomic regions from SNP 167748 to 168348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,933 DEBUG Processing 275/651 atomic regions from SNP 82320 to 82920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,938 DEBUG Processing 576/696 atomic regions from SNP 172510 to 173110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,009 DEBUG Processing 77/553 atomic regions from SNP 22827 to 23427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,111 DEBUG Processing 199/589 atomic regions from SNP 59422 to 60022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,214 DEBUG Processing 561/668 atomic regions from SNP 168048 to 168648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,270 DEBUG Processing 276/651 atomic regions from SNP 82620 to 83220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,271 DEBUG Processing 78/553 atomic regions from SNP 23127 to 23727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,276 DEBUG Processing 577/696 atomic regions from SNP 172810 to 173410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,394 DEBUG Processing 200/589 atomic regions from SNP 59722 to 60322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,508 DEBUG Processing 79/553 atomic regions from SNP 23427 to 24027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,513 DEBUG Processing 562/668 atomic regions from SNP 168348 to 168948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,575 DEBUG Processing 277/651 atomic regions from SNP 82920 to 83520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,618 DEBUG Processing 578/696 atomic regions from SNP 173110 to 173710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,662 DEBUG Processing 201/589 atomic regions from SNP 60022 to 60622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,735 DEBUG Processing 80/553 atomic regions from SNP 23727 to 24327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,772 DEBUG Processing 563/668 atomic regions from SNP 168648 to 169248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,884 DEBUG Processing 278/651 atomic regions from SNP 83220 to 83820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,968 DEBUG Processing 202/589 atomic regions from SNP 60322 to 60922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,982 DEBUG Processing 579/696 atomic regions from SNP 173410 to 174010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,003 DEBUG Processing 81/553 atomic regions from SNP 24027 to 24627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,069 DEBUG Processing 564/668 atomic regions from SNP 168948 to 169548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,155 DEBUG Processing 279/651 atomic regions from SNP 83520 to 84120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,227 DEBUG Processing 203/589 atomic regions from SNP 60622 to 61222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,255 DEBUG Processing 82/553 atomic regions from SNP 24327 to 24927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,271 DEBUG Processing 580/696 atomic regions from SNP 173710 to 174310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,339 DEBUG Processing 565/668 atomic regions from SNP 169248 to 169848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,403 DEBUG Processing 280/651 atomic regions from SNP 83820 to 84420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,524 DEBUG Processing 204/589 atomic regions from SNP 60922 to 61522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,540 DEBUG Processing 83/553 atomic regions from SNP 24627 to 25227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,578 DEBUG Processing 581/696 atomic regions from SNP 174010 to 174610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,677 DEBUG Processing 566/668 atomic regions from SNP 169548 to 170148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,711 DEBUG Processing 281/651 atomic regions from SNP 84120 to 84720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,833 DEBUG Processing 205/589 atomic regions from SNP 61222 to 61822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,840 DEBUG Processing 84/553 atomic regions from SNP 24927 to 25527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,863 DEBUG Processing 582/696 atomic regions from SNP 174310 to 174910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,965 DEBUG Processing 567/668 atomic regions from SNP 169848 to 170448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,984 DEBUG Processing 282/651 atomic regions from SNP 84420 to 85020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,156 DEBUG Processing 85/553 atomic regions from SNP 25227 to 25827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,177 DEBUG Processing 206/589 atomic regions from SNP 61522 to 62122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,207 DEBUG Processing 583/696 atomic regions from SNP 174610 to 175210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,302 DEBUG Processing 283/651 atomic regions from SNP 84720 to 85320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,304 DEBUG Processing 568/668 atomic regions from SNP 170148 to 170748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,477 DEBUG Processing 86/553 atomic regions from SNP 25527 to 26127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,486 DEBUG Processing 207/589 atomic regions from SNP 61822 to 62422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,528 DEBUG Processing 584/696 atomic regions from SNP 174910 to 175510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,587 DEBUG Processing 569/668 atomic regions from SNP 170448 to 171048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,593 DEBUG Processing 284/651 atomic regions from SNP 85020 to 85620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,805 DEBUG Processing 87/553 atomic regions from SNP 25827 to 26427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,809 DEBUG Processing 208/589 atomic regions from SNP 62122 to 62722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,860 DEBUG Processing 585/696 atomic regions from SNP 175210 to 175810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,902 DEBUG Processing 570/668 atomic regions from SNP 170748 to 171348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,904 DEBUG Processing 285/651 atomic regions from SNP 85320 to 85920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,066 DEBUG Processing 209/589 atomic regions from SNP 62422 to 63022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,073 DEBUG Processing 88/553 atomic regions from SNP 26127 to 26727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,184 DEBUG Processing 586/696 atomic regions from SNP 175510 to 176110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,205 DEBUG Processing 571/668 atomic regions from SNP 171048 to 171648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,211 DEBUG Processing 286/651 atomic regions from SNP 85620 to 86220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,329 DEBUG Processing 210/589 atomic regions from SNP 62722 to 63322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,347 DEBUG Processing 89/553 atomic regions from SNP 26427 to 27027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,455 DEBUG Processing 587/696 atomic regions from SNP 175810 to 176410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,461 DEBUG Processing 572/668 atomic regions from SNP 171348 to 171948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,482 DEBUG Processing 287/651 atomic regions from SNP 85920 to 86520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,553 DEBUG Processing 211/589 atomic regions from SNP 63022 to 63622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,586 DEBUG Processing 90/553 atomic regions from SNP 26727 to 27327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,704 DEBUG Processing 588/696 atomic regions from SNP 176110 to 176710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,711 DEBUG Processing 573/668 atomic regions from SNP 171648 to 172248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,726 DEBUG Processing 288/651 atomic regions from SNP 86220 to 86820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,779 DEBUG Processing 212/589 atomic regions from SNP 63322 to 63922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,823 DEBUG Processing 91/553 atomic regions from SNP 27027 to 27627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,944 DEBUG Processing 574/668 atomic regions from SNP 171948 to 172548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,945 DEBUG Processing 589/696 atomic regions from SNP 176410 to 177010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,967 DEBUG Processing 289/651 atomic regions from SNP 86520 to 87120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,013 DEBUG Processing 213/589 atomic regions from SNP 63622 to 64222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,041 DEBUG Processing 92/553 atomic regions from SNP 27327 to 27927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,193 DEBUG Processing 590/696 atomic regions from SNP 176710 to 177310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,199 DEBUG Processing 575/668 atomic regions from SNP 172248 to 172848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,209 DEBUG Processing 290/651 atomic regions from SNP 86820 to 87420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,249 DEBUG Processing 214/589 atomic regions from SNP 63922 to 64522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,262 DEBUG Processing 93/553 atomic regions from SNP 27627 to 28227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,441 DEBUG Processing 576/668 atomic regions from SNP 172548 to 173148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,446 DEBUG Processing 591/696 atomic regions from SNP 177010 to 177610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,455 DEBUG Processing 291/651 atomic regions from SNP 87120 to 87720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,486 DEBUG Processing 215/589 atomic regions from SNP 64222 to 64822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,493 DEBUG Processing 94/553 atomic regions from SNP 27927 to 28527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,670 DEBUG Processing 577/668 atomic regions from SNP 172848 to 173448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,690 DEBUG Processing 592/696 atomic regions from SNP 177310 to 177910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,696 DEBUG Processing 292/651 atomic regions from SNP 87420 to 88020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,709 DEBUG Processing 95/553 atomic regions from SNP 28227 to 28827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,723 DEBUG Processing 216/589 atomic regions from SNP 64522 to 65122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,905 DEBUG Processing 578/668 atomic regions from SNP 173148 to 173748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,927 DEBUG Processing 96/553 atomic regions from SNP 28527 to 29127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,934 DEBUG Processing 593/696 atomic regions from SNP 177610 to 178210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,944 DEBUG Processing 293/651 atomic regions from SNP 87720 to 88320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,964 DEBUG Processing 217/589 atomic regions from SNP 64822 to 65422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,139 DEBUG Processing 579/668 atomic regions from SNP 173448 to 174048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,144 DEBUG Processing 97/553 atomic regions from SNP 28827 to 29427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,191 DEBUG Processing 594/696 atomic regions from SNP 177910 to 178510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,203 DEBUG Processing 294/651 atomic regions from SNP 88020 to 88620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,216 DEBUG Processing 218/589 atomic regions from SNP 65122 to 65722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,361 DEBUG Processing 98/553 atomic regions from SNP 29127 to 29727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,381 DEBUG Processing 580/668 atomic regions from SNP 173748 to 174348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,460 DEBUG Processing 595/696 atomic regions from SNP 178210 to 178810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,473 DEBUG Processing 295/651 atomic regions from SNP 88320 to 88920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,489 DEBUG Processing 219/589 atomic regions from SNP 65422 to 66022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,589 DEBUG Processing 99/553 atomic regions from SNP 29427 to 30027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,624 DEBUG Processing 581/668 atomic regions from SNP 174048 to 174648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,763 DEBUG Processing 296/651 atomic regions from SNP 88620 to 89220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,770 DEBUG Processing 596/696 atomic regions from SNP 178510 to 179110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,776 DEBUG Processing 220/589 atomic regions from SNP 65722 to 66322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,849 DEBUG Processing 100/553 atomic regions from SNP 29727 to 30327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,899 DEBUG Processing 582/668 atomic regions from SNP 174348 to 174948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,069 DEBUG Processing 221/589 atomic regions from SNP 66022 to 66622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,075 DEBUG Processing 597/696 atomic regions from SNP 178810 to 179410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,076 DEBUG Processing 297/651 atomic regions from SNP 88920 to 89520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,095 DEBUG Processing 101/553 atomic regions from SNP 30027 to 30627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,155 DEBUG Processing 583/668 atomic regions from SNP 174648 to 175248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,370 DEBUG Processing 222/589 atomic regions from SNP 66322 to 66922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,373 DEBUG Processing 598/696 atomic regions from SNP 179110 to 179710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,385 DEBUG Processing 102/553 atomic regions from SNP 30327 to 30927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,405 DEBUG Processing 298/651 atomic regions from SNP 89220 to 89820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,433 DEBUG Processing 584/668 atomic regions from SNP 174948 to 175548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,735 DEBUG Processing 223/589 atomic regions from SNP 66622 to 67222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,740 DEBUG Processing 599/696 atomic regions from SNP 179410 to 180010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,756 DEBUG Processing 103/553 atomic regions from SNP 30627 to 31227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,766 DEBUG Processing 585/668 atomic regions from SNP 175248 to 175848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,771 DEBUG Processing 299/651 atomic regions from SNP 89520 to 90120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,055 DEBUG Processing 224/589 atomic regions from SNP 66922 to 67522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,070 DEBUG Processing 104/553 atomic regions from SNP 30927 to 31527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,072 DEBUG Processing 600/696 atomic regions from SNP 179710 to 180310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,082 DEBUG Processing 586/668 atomic regions from SNP 175548 to 176148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,096 DEBUG Processing 300/651 atomic regions from SNP 89820 to 90420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,297 DEBUG Processing 105/553 atomic regions from SNP 31227 to 31827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,314 DEBUG Processing 225/589 atomic regions from SNP 67222 to 67822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,325 DEBUG Processing 587/668 atomic regions from SNP 175848 to 176448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,359 DEBUG Processing 601/696 atomic regions from SNP 180010 to 180610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,371 DEBUG Processing 301/651 atomic regions from SNP 90120 to 90720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,504 DEBUG Processing 106/553 atomic regions from SNP 31527 to 32127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,553 DEBUG Processing 226/589 atomic regions from SNP 67522 to 68122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,553 DEBUG Processing 588/668 atomic regions from SNP 176148 to 176748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,624 DEBUG Processing 302/651 atomic regions from SNP 90420 to 91020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,634 DEBUG Processing 602/696 atomic regions from SNP 180310 to 180910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,722 DEBUG Processing 107/553 atomic regions from SNP 31827 to 32427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,773 DEBUG Processing 589/668 atomic regions from SNP 176448 to 177048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,781 DEBUG Processing 227/589 atomic regions from SNP 67822 to 68422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,872 DEBUG Processing 303/651 atomic regions from SNP 90720 to 91320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,909 DEBUG Processing 603/696 atomic regions from SNP 180610 to 181210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,955 DEBUG Processing 108/553 atomic regions from SNP 32127 to 32727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,998 DEBUG Processing 590/668 atomic regions from SNP 176748 to 177348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,009 DEBUG Processing 228/589 atomic regions from SNP 68122 to 68722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,127 DEBUG Processing 304/651 atomic regions from SNP 91020 to 91620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,167 DEBUG Processing 109/553 atomic regions from SNP 32427 to 33027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,175 DEBUG Processing 604/696 atomic regions from SNP 180910 to 181510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,223 DEBUG Processing 591/668 atomic regions from SNP 177048 to 177648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,238 DEBUG Processing 229/589 atomic regions from SNP 68422 to 69022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,374 DEBUG Processing 110/553 atomic regions from SNP 32727 to 33327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,374 DEBUG Processing 305/651 atomic regions from SNP 91320 to 91920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,440 DEBUG Processing 605/696 atomic regions from SNP 181210 to 181810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,451 DEBUG Processing 592/668 atomic regions from SNP 177348 to 177948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,478 DEBUG Processing 230/589 atomic regions from SNP 68722 to 69322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,597 DEBUG Processing 111/553 atomic regions from SNP 33027 to 33627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,627 DEBUG Processing 306/651 atomic regions from SNP 91620 to 92220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,707 DEBUG Processing 606/696 atomic regions from SNP 181510 to 182110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,710 DEBUG Processing 593/668 atomic regions from SNP 177648 to 178248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,730 DEBUG Processing 231/589 atomic regions from SNP 69022 to 69622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,813 DEBUG Processing 112/553 atomic regions from SNP 33327 to 33927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,875 DEBUG Processing 307/651 atomic regions from SNP 91920 to 92520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,958 DEBUG Processing 594/668 atomic regions from SNP 177948 to 178548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,982 DEBUG Processing 232/589 atomic regions from SNP 69322 to 69922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,999 DEBUG Processing 607/696 atomic regions from SNP 181810 to 182410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,021 DEBUG Processing 113/553 atomic regions from SNP 33627 to 34227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,122 DEBUG Processing 308/651 atomic regions from SNP 92220 to 92820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,192 DEBUG Processing 595/668 atomic regions from SNP 178248 to 178848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,233 DEBUG Processing 233/589 atomic regions from SNP 69622 to 70222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,237 DEBUG Processing 114/553 atomic regions from SNP 33927 to 34527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,255 DEBUG Processing 608/696 atomic regions from SNP 182110 to 182710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,375 DEBUG Processing 309/651 atomic regions from SNP 92520 to 93120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,438 DEBUG Processing 596/668 atomic regions from SNP 178548 to 179148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,460 DEBUG Processing 115/553 atomic regions from SNP 34227 to 34827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,494 DEBUG Processing 234/589 atomic regions from SNP 69922 to 70522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,529 DEBUG Processing 609/696 atomic regions from SNP 182410 to 183010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,681 DEBUG Processing 310/651 atomic regions from SNP 92820 to 93420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,699 DEBUG Processing 116/553 atomic regions from SNP 34527 to 35127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,701 DEBUG Processing 597/668 atomic regions from SNP 178848 to 179448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,760 DEBUG Processing 235/589 atomic regions from SNP 70222 to 70822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,807 DEBUG Processing 610/696 atomic regions from SNP 182710 to 183310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,923 DEBUG Processing 117/553 atomic regions from SNP 34827 to 35427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,936 DEBUG Processing 311/651 atomic regions from SNP 93120 to 93720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,940 DEBUG Processing 598/668 atomic regions from SNP 179148 to 179748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,011 DEBUG Processing 236/589 atomic regions from SNP 70522 to 71122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,051 DEBUG Processing 611/696 atomic regions from SNP 183010 to 183610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,161 DEBUG Processing 118/553 atomic regions from SNP 35127 to 35727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,184 DEBUG Processing 599/668 atomic regions from SNP 179448 to 180048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,189 DEBUG Processing 312/651 atomic regions from SNP 93420 to 94020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,260 DEBUG Processing 237/589 atomic regions from SNP 70822 to 71422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,299 DEBUG Processing 612/696 atomic regions from SNP 183310 to 183910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,405 DEBUG Processing 119/553 atomic regions from SNP 35427 to 36027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,420 DEBUG Processing 600/668 atomic regions from SNP 179748 to 180348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,434 DEBUG Processing 313/651 atomic regions from SNP 93720 to 94320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,503 DEBUG Processing 238/589 atomic regions from SNP 71122 to 71722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,544 DEBUG Processing 613/696 atomic regions from SNP 183610 to 184210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,616 DEBUG Processing 120/553 atomic regions from SNP 35727 to 36327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,657 DEBUG Processing 601/668 atomic regions from SNP 180048 to 180648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,686 DEBUG Processing 314/651 atomic regions from SNP 94020 to 94620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,751 DEBUG Processing 239/589 atomic regions from SNP 71422 to 72022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,795 DEBUG Processing 614/696 atomic regions from SNP 183910 to 184510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,823 DEBUG Processing 121/553 atomic regions from SNP 36027 to 36627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,890 DEBUG Processing 602/668 atomic regions from SNP 180348 to 180948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,940 DEBUG Processing 315/651 atomic regions from SNP 94320 to 94920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,995 DEBUG Processing 240/589 atomic regions from SNP 71722 to 72322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,030 DEBUG Processing 122/553 atomic regions from SNP 36327 to 36927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,056 DEBUG Processing 615/696 atomic regions from SNP 184210 to 184810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,123 DEBUG Processing 603/668 atomic regions from SNP 180648 to 181248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,197 DEBUG Processing 316/651 atomic regions from SNP 94620 to 95220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,243 DEBUG Processing 123/553 atomic regions from SNP 36627 to 37227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,249 DEBUG Processing 241/589 atomic regions from SNP 72022 to 72622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,311 DEBUG Processing 616/696 atomic regions from SNP 184510 to 185110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,348 DEBUG Processing 604/668 atomic regions from SNP 180948 to 181548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,439 DEBUG Processing 317/651 atomic regions from SNP 94920 to 95520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,450 DEBUG Processing 124/553 atomic regions from SNP 36927 to 37527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,488 DEBUG Processing 242/589 atomic regions from SNP 72322 to 72922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,560 DEBUG Processing 617/696 atomic regions from SNP 184810 to 185410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,576 DEBUG Processing 605/668 atomic regions from SNP 181248 to 181848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,650 DEBUG Processing 125/553 atomic regions from SNP 37227 to 37827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,685 DEBUG Processing 318/651 atomic regions from SNP 95220 to 95820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,736 DEBUG Processing 243/589 atomic regions from SNP 72622 to 73222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,805 DEBUG Processing 606/668 atomic regions from SNP 181548 to 182148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,818 DEBUG Processing 618/696 atomic regions from SNP 185110 to 185710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,858 DEBUG Processing 126/553 atomic regions from SNP 37527 to 38127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,928 DEBUG Processing 319/651 atomic regions from SNP 95520 to 96120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,983 DEBUG Processing 244/589 atomic regions from SNP 72922 to 73522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,045 DEBUG Processing 607/668 atomic regions from SNP 181848 to 182448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,073 DEBUG Processing 127/553 atomic regions from SNP 37827 to 38427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,073 DEBUG Processing 619/696 atomic regions from SNP 185410 to 186010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,174 DEBUG Processing 320/651 atomic regions from SNP 95820 to 96420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,233 DEBUG Processing 245/589 atomic regions from SNP 73222 to 73822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,294 DEBUG Processing 608/668 atomic regions from SNP 182148 to 182748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,297 DEBUG Processing 128/553 atomic regions from SNP 38127 to 38727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,340 DEBUG Processing 620/696 atomic regions from SNP 185710 to 186310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,422 DEBUG Processing 321/651 atomic regions from SNP 96120 to 96720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,520 DEBUG Processing 246/589 atomic regions from SNP 73522 to 74122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,563 DEBUG Processing 129/553 atomic regions from SNP 38427 to 39027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,601 DEBUG Processing 609/668 atomic regions from SNP 182448 to 183048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,666 DEBUG Processing 621/696 atomic regions from SNP 186010 to 186610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,716 DEBUG Processing 322/651 atomic regions from SNP 96420 to 97020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,820 DEBUG Processing 247/589 atomic regions from SNP 73822 to 74422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,831 DEBUG Processing 130/553 atomic regions from SNP 38727 to 39327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,909 DEBUG Processing 610/668 atomic regions from SNP 182748 to 183348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,016 DEBUG Processing 622/696 atomic regions from SNP 186310 to 186910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,032 DEBUG Processing 323/651 atomic regions from SNP 96720 to 97320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,108 DEBUG Processing 131/553 atomic regions from SNP 39027 to 39627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,129 DEBUG Processing 248/589 atomic regions from SNP 74122 to 74722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,186 DEBUG Processing 611/668 atomic regions from SNP 183048 to 183648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,285 DEBUG Processing 324/651 atomic regions from SNP 97020 to 97620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,290 DEBUG Processing 623/696 atomic regions from SNP 186610 to 187210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,320 DEBUG Processing 132/553 atomic regions from SNP 39327 to 39927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,373 DEBUG Processing 249/589 atomic regions from SNP 74422 to 75022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,430 DEBUG Processing 612/668 atomic regions from SNP 183348 to 183948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,527 DEBUG Processing 133/553 atomic regions from SNP 39627 to 40227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,540 DEBUG Processing 325/651 atomic regions from SNP 97320 to 97920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,552 DEBUG Processing 624/696 atomic regions from SNP 186910 to 187510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,622 DEBUG Processing 250/589 atomic regions from SNP 74722 to 75322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,662 DEBUG Processing 613/668 atomic regions from SNP 183648 to 184248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,735 DEBUG Processing 134/553 atomic regions from SNP 39927 to 40527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,793 DEBUG Processing 326/651 atomic regions from SNP 97620 to 98220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,809 DEBUG Processing 625/696 atomic regions from SNP 187210 to 187810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,881 DEBUG Processing 251/589 atomic regions from SNP 75022 to 75622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,901 DEBUG Processing 614/668 atomic regions from SNP 183948 to 184548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,947 DEBUG Processing 135/553 atomic regions from SNP 40227 to 40827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,049 DEBUG Processing 327/651 atomic regions from SNP 97920 to 98520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,070 DEBUG Processing 626/696 atomic regions from SNP 187510 to 188110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,136 DEBUG Processing 252/589 atomic regions from SNP 75322 to 75922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,142 DEBUG Processing 615/668 atomic regions from SNP 184248 to 184848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,158 DEBUG Processing 136/553 atomic regions from SNP 40527 to 41127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,304 DEBUG Processing 328/651 atomic regions from SNP 98220 to 98820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,334 DEBUG Processing 627/696 atomic regions from SNP 187810 to 188410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,377 DEBUG Processing 137/553 atomic regions from SNP 40827 to 41427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,385 DEBUG Processing 616/668 atomic regions from SNP 184548 to 185148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,393 DEBUG Processing 253/589 atomic regions from SNP 75622 to 76222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,569 DEBUG Processing 329/651 atomic regions from SNP 98520 to 99120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,640 DEBUG Processing 138/553 atomic regions from SNP 41127 to 41727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,650 DEBUG Processing 628/696 atomic regions from SNP 188110 to 188710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,650 DEBUG Processing 617/668 atomic regions from SNP 184848 to 185448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,666 DEBUG Processing 254/589 atomic regions from SNP 75922 to 76522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,857 DEBUG Processing 330/651 atomic regions from SNP 98820 to 99420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,907 DEBUG Processing 139/553 atomic regions from SNP 41427 to 42027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,953 DEBUG Processing 618/668 atomic regions from SNP 185148 to 185748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,965 DEBUG Processing 629/696 atomic regions from SNP 188410 to 189010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,980 DEBUG Processing 255/589 atomic regions from SNP 76222 to 76822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,210 DEBUG Processing 140/553 atomic regions from SNP 41727 to 42327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,219 DEBUG Processing 331/651 atomic regions from SNP 99120 to 99720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,285 DEBUG Processing 619/668 atomic regions from SNP 185448 to 186048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,316 DEBUG Processing 256/589 atomic regions from SNP 76522 to 77122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,322 DEBUG Processing 630/696 atomic regions from SNP 188710 to 189310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,503 DEBUG Processing 141/553 atomic regions from SNP 42027 to 42627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,598 DEBUG Processing 332/651 atomic regions from SNP 99420 to 100020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,630 DEBUG Processing 620/668 atomic regions from SNP 185748 to 186348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,659 DEBUG Processing 257/589 atomic regions from SNP 76822 to 77422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,677 DEBUG Processing 631/696 atomic regions from SNP 189010 to 189610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,829 DEBUG Processing 142/553 atomic regions from SNP 42327 to 42927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,972 DEBUG Processing 333/651 atomic regions from SNP 99720 to 100320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,022 DEBUG Processing 621/668 atomic regions from SNP 186048 to 186648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,032 DEBUG Processing 258/589 atomic regions from SNP 77122 to 77722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,108 DEBUG Processing 632/696 atomic regions from SNP 189310 to 189910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,205 DEBUG Processing 143/553 atomic regions from SNP 42627 to 43227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,387 DEBUG Processing 334/651 atomic regions from SNP 100020 to 100620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,415 DEBUG Processing 259/589 atomic regions from SNP 77422 to 78022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,460 DEBUG Processing 622/668 atomic regions from SNP 186348 to 186948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,523 DEBUG Processing 633/696 atomic regions from SNP 189610 to 190210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,526 DEBUG Processing 144/553 atomic regions from SNP 42927 to 43527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,746 DEBUG Processing 335/651 atomic regions from SNP 100320 to 100920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,793 DEBUG Processing 260/589 atomic regions from SNP 77722 to 78322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,867 DEBUG Processing 623/668 atomic regions from SNP 186648 to 187248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,892 DEBUG Processing 145/553 atomic regions from SNP 43227 to 43827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,934 DEBUG Processing 634/696 atomic regions from SNP 189910 to 190510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,127 DEBUG Processing 336/651 atomic regions from SNP 100620 to 101220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,183 DEBUG Processing 261/589 atomic regions from SNP 78022 to 78622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,265 DEBUG Processing 146/553 atomic regions from SNP 43527 to 44127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,268 DEBUG Processing 624/668 atomic regions from SNP 186948 to 187548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,348 DEBUG Processing 635/696 atomic regions from SNP 190210 to 190810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,508 DEBUG Processing 337/651 atomic regions from SNP 100920 to 101520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,554 DEBUG Processing 262/589 atomic regions from SNP 78322 to 78922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,628 DEBUG Processing 147/553 atomic regions from SNP 43827 to 44427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,649 DEBUG Processing 625/668 atomic regions from SNP 187248 to 187848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,763 DEBUG Processing 636/696 atomic regions from SNP 190510 to 191110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,897 DEBUG Processing 338/651 atomic regions from SNP 101220 to 101820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,948 DEBUG Processing 263/589 atomic regions from SNP 78622 to 79222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,993 DEBUG Processing 148/553 atomic regions from SNP 44127 to 44727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,022 DEBUG Processing 626/668 atomic regions from SNP 187548 to 188148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,151 DEBUG Processing 637/696 atomic regions from SNP 190810 to 191410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,234 DEBUG Processing 339/651 atomic regions from SNP 101520 to 102120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,253 DEBUG Processing 264/589 atomic regions from SNP 78922 to 79522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,261 DEBUG Processing 149/553 atomic regions from SNP 44427 to 45027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,324 DEBUG Processing 627/668 atomic regions from SNP 187848 to 188448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,504 DEBUG Processing 638/696 atomic regions from SNP 191110 to 191710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,603 DEBUG Processing 150/553 atomic regions from SNP 44727 to 45327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,609 DEBUG Processing 340/651 atomic regions from SNP 101820 to 102420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,611 DEBUG Processing 265/589 atomic regions from SNP 79222 to 79822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,675 DEBUG Processing 628/668 atomic regions from SNP 188148 to 188748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,870 DEBUG Processing 639/696 atomic regions from SNP 191410 to 192010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,975 DEBUG Processing 151/553 atomic regions from SNP 45027 to 45627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,002 DEBUG Processing 266/589 atomic regions from SNP 79522 to 80122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,011 DEBUG Processing 341/651 atomic regions from SNP 102120 to 102720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,054 DEBUG Processing 629/668 atomic regions from SNP 188448 to 189048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,258 DEBUG Processing 640/696 atomic regions from SNP 191710 to 192310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,346 DEBUG Processing 152/553 atomic regions from SNP 45327 to 45927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,395 DEBUG Processing 267/589 atomic regions from SNP 79822 to 80422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,418 DEBUG Processing 342/651 atomic regions from SNP 102420 to 103020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,442 DEBUG Processing 630/668 atomic regions from SNP 188748 to 189348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,673 DEBUG Processing 641/696 atomic regions from SNP 192010 to 192610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,701 DEBUG Processing 153/553 atomic regions from SNP 45627 to 46227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,793 DEBUG Processing 268/589 atomic regions from SNP 80122 to 80722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,835 DEBUG Processing 631/668 atomic regions from SNP 189048 to 189648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,836 DEBUG Processing 343/651 atomic regions from SNP 102720 to 103320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,045 DEBUG Processing 642/696 atomic regions from SNP 192310 to 192910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,047 DEBUG Processing 154/553 atomic regions from SNP 45927 to 46527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,162 DEBUG Processing 269/589 atomic regions from SNP 80422 to 81022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,222 DEBUG Processing 632/668 atomic regions from SNP 189348 to 189948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,225 DEBUG Processing 344/651 atomic regions from SNP 103020 to 103620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,344 DEBUG Processing 155/553 atomic regions from SNP 46227 to 46827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,350 DEBUG Processing 643/696 atomic regions from SNP 192610 to 193210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,435 DEBUG Processing 270/589 atomic regions from SNP 80722 to 81322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,531 DEBUG Processing 633/668 atomic regions from SNP 189648 to 190248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,571 DEBUG Processing 345/651 atomic regions from SNP 103320 to 103920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,631 DEBUG Processing 156/553 atomic regions from SNP 46527 to 47127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,677 DEBUG Processing 644/696 atomic regions from SNP 192910 to 193510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,717 DEBUG Processing 271/589 atomic regions from SNP 81022 to 81622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,877 DEBUG Processing 634/668 atomic regions from SNP 189948 to 190548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,905 DEBUG Processing 346/651 atomic regions from SNP 103620 to 104220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,956 DEBUG Processing 157/553 atomic regions from SNP 46827 to 47427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,057 DEBUG Processing 645/696 atomic regions from SNP 193210 to 193810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,092 DEBUG Processing 272/589 atomic regions from SNP 81322 to 81922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,265 DEBUG Processing 635/668 atomic regions from SNP 190248 to 190848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,288 DEBUG Processing 347/651 atomic regions from SNP 103920 to 104520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,336 DEBUG Processing 158/553 atomic regions from SNP 47127 to 47727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,483 DEBUG Processing 646/696 atomic regions from SNP 193510 to 194110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,511 DEBUG Processing 273/589 atomic regions from SNP 81622 to 82222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,687 DEBUG Processing 636/668 atomic regions from SNP 190548 to 191148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,730 DEBUG Processing 348/651 atomic regions from SNP 104220 to 104820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,749 DEBUG Processing 159/553 atomic regions from SNP 47427 to 48027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,921 DEBUG Processing 647/696 atomic regions from SNP 193810 to 194410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,928 DEBUG Processing 274/589 atomic regions from SNP 81922 to 82522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,098 DEBUG Processing 637/668 atomic regions from SNP 190848 to 191448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,152 DEBUG Processing 349/651 atomic regions from SNP 104520 to 105120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,153 DEBUG Processing 160/553 atomic regions from SNP 47727 to 48327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,317 DEBUG Processing 275/589 atomic regions from SNP 82222 to 82822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,331 DEBUG Processing 648/696 atomic regions from SNP 194110 to 194710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,402 DEBUG Processing 638/668 atomic regions from SNP 191148 to 191748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,443 DEBUG Processing 161/553 atomic regions from SNP 48027 to 48627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,449 DEBUG Processing 350/651 atomic regions from SNP 104820 to 105420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,616 DEBUG Processing 276/589 atomic regions from SNP 82522 to 83122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,649 DEBUG Processing 649/696 atomic regions from SNP 194410 to 195010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,724 DEBUG Processing 639/668 atomic regions from SNP 191448 to 192048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,768 DEBUG Processing 162/553 atomic regions from SNP 48327 to 48927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,773 DEBUG Processing 351/651 atomic regions from SNP 105120 to 105720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,939 DEBUG Processing 277/589 atomic regions from SNP 82822 to 83422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,004 DEBUG Processing 650/696 atomic regions from SNP 194710 to 195310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,096 DEBUG Processing 640/668 atomic regions from SNP 191748 to 192348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,104 DEBUG Processing 163/553 atomic regions from SNP 48627 to 49227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,138 DEBUG Processing 352/651 atomic regions from SNP 105420 to 106020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,298 DEBUG Processing 278/589 atomic regions from SNP 83122 to 83722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,354 DEBUG Processing 651/696 atomic regions from SNP 195010 to 195610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,469 DEBUG Processing 164/553 atomic regions from SNP 48927 to 49527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,484 DEBUG Processing 641/668 atomic regions from SNP 192048 to 192648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,557 DEBUG Processing 353/651 atomic regions from SNP 105720 to 106320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,675 DEBUG Processing 279/589 atomic regions from SNP 83422 to 84022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,735 DEBUG Processing 652/696 atomic regions from SNP 195310 to 195910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,802 DEBUG Processing 165/553 atomic regions from SNP 49227 to 49827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,834 DEBUG Processing 642/668 atomic regions from SNP 192348 to 192948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,955 DEBUG Processing 354/651 atomic regions from SNP 106020 to 106620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,018 DEBUG Processing 280/589 atomic regions from SNP 83722 to 84322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,119 DEBUG Processing 653/696 atomic regions from SNP 195610 to 196210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,140 DEBUG Processing 166/553 atomic regions from SNP 49527 to 50127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,174 DEBUG Processing 643/668 atomic regions from SNP 192648 to 193248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,308 DEBUG Processing 355/651 atomic regions from SNP 106320 to 106920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,321 DEBUG Processing 281/589 atomic regions from SNP 84022 to 84622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,464 DEBUG Processing 654/696 atomic regions from SNP 195910 to 196510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,479 DEBUG Processing 167/553 atomic regions from SNP 49827 to 50427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,511 DEBUG Processing 644/668 atomic regions from SNP 192948 to 193548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,662 DEBUG Processing 282/589 atomic regions from SNP 84322 to 84922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,696 DEBUG Processing 356/651 atomic regions from SNP 106620 to 107220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,833 DEBUG Processing 168/553 atomic regions from SNP 50127 to 50727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,850 DEBUG Processing 655/696 atomic regions from SNP 196210 to 196810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,894 DEBUG Processing 645/668 atomic regions from SNP 193248 to 193848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,037 DEBUG Processing 283/589 atomic regions from SNP 84622 to 85222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,110 DEBUG Processing 357/651 atomic regions from SNP 106920 to 107520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,186 DEBUG Processing 169/553 atomic regions from SNP 50427 to 51027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,258 DEBUG Processing 656/696 atomic regions from SNP 196510 to 197110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,260 DEBUG Processing 646/668 atomic regions from SNP 193548 to 194148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,394 DEBUG Processing 284/589 atomic regions from SNP 84922 to 85522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,479 DEBUG Processing 358/651 atomic regions from SNP 107220 to 107820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,497 DEBUG Processing 170/553 atomic regions from SNP 50727 to 51327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,565 DEBUG Processing 647/668 atomic regions from SNP 193848 to 194448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,603 DEBUG Processing 657/696 atomic regions from SNP 196810 to 197410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,633 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:56:12,734 DEBUG Processing 285/589 atomic regions from SNP 85222 to 85822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,851 DEBUG Processing 359/651 atomic regions from SNP 107520 to 108120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,855 DEBUG Processing 171/553 atomic regions from SNP 51027 to 51627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,890 DEBUG Processing 648/668 atomic regions from SNP 194148 to 194748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,017 DEBUG Processing 658/696 atomic regions from SNP 197110 to 197710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,097 DEBUG Processing 286/589 atomic regions from SNP 85522 to 86122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,227 DEBUG Processing 172/553 atomic regions from SNP 51327 to 51927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,234 DEBUG Processing 649/668 atomic regions from SNP 194448 to 195048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,234 DEBUG Processing 360/651 atomic regions from SNP 107820 to 108420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,396 DEBUG Processing 659/696 atomic regions from SNP 197410 to 198010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,435 DEBUG Processing 287/589 atomic regions from SNP 85822 to 86422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,580 DEBUG Processing 173/553 atomic regions from SNP 51627 to 52227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,585 DEBUG Processing 650/668 atomic regions from SNP 194748 to 195348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,602 DEBUG Processing 361/651 atomic regions from SNP 108120 to 108720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,778 DEBUG Processing 288/589 atomic regions from SNP 86122 to 86722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,786 DEBUG Processing 660/696 atomic regions from SNP 197710 to 198310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,957 DEBUG Processing 174/553 atomic regions from SNP 51927 to 52527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,958 DEBUG Processing 651/668 atomic regions from SNP 195048 to 195648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,994 DEBUG Processing 362/651 atomic regions from SNP 108420 to 109020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,159 DEBUG Processing 289/589 atomic regions from SNP 86422 to 87022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,211 DEBUG Processing 661/696 atomic regions from SNP 198010 to 198610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,332 DEBUG Processing 652/668 atomic regions from SNP 195348 to 195948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,359 DEBUG Processing 175/553 atomic regions from SNP 52227 to 52827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,389 DEBUG Processing 363/651 atomic regions from SNP 108720 to 109320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,522 DEBUG Processing 290/589 atomic regions from SNP 86722 to 87322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,622 DEBUG Processing 662/696 atomic regions from SNP 198310 to 198910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,696 DEBUG Processing 653/668 atomic regions from SNP 195648 to 196248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,759 DEBUG Processing 176/553 atomic regions from SNP 52527 to 53127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,826 DEBUG Processing 364/651 atomic regions from SNP 109020 to 109620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,903 DEBUG Processing 291/589 atomic regions from SNP 87022 to 87622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,027 DEBUG Processing 663/696 atomic regions from SNP 198610 to 199210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,067 DEBUG Processing 654/668 atomic regions from SNP 195948 to 196548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,144 DEBUG Processing 177/553 atomic regions from SNP 52827 to 53427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,209 DEBUG Processing 365/651 atomic regions from SNP 109320 to 109920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,264 DEBUG Processing 292/589 atomic regions from SNP 87322 to 87922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,377 DEBUG Processing 664/696 atomic regions from SNP 198910 to 199510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,383 DEBUG Processing 655/668 atomic regions from SNP 196248 to 196848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,495 DEBUG Processing 178/553 atomic regions from SNP 53127 to 53727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,534 DEBUG Processing 366/651 atomic regions from SNP 109620 to 110220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,571 DEBUG Processing 293/589 atomic regions from SNP 87622 to 88222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,673 DEBUG Processing 656/668 atomic regions from SNP 196548 to 197148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,700 DEBUG Processing 665/696 atomic regions from SNP 199210 to 199810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,727 DEBUG Processing 179/553 atomic regions from SNP 53427 to 54027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,799 DEBUG Processing 367/651 atomic regions from SNP 109920 to 110520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,835 DEBUG Processing 294/589 atomic regions from SNP 87922 to 88522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,961 DEBUG Processing 657/668 atomic regions from SNP 196848 to 197448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,015 DEBUG Processing 180/553 atomic regions from SNP 53727 to 54327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,033 DEBUG Processing 666/696 atomic regions from SNP 199510 to 200110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,093 DEBUG Processing 368/651 atomic regions from SNP 110220 to 110820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,115 DEBUG Processing 295/589 atomic regions from SNP 88222 to 88822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,242 DEBUG Processing 658/668 atomic regions from SNP 197148 to 197748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,302 DEBUG Processing 181/553 atomic regions from SNP 54027 to 54627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,383 DEBUG Processing 667/696 atomic regions from SNP 199810 to 200410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,401 DEBUG Processing 369/651 atomic regions from SNP 110520 to 111120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,418 DEBUG Processing 296/589 atomic regions from SNP 88522 to 89122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,561 DEBUG Processing 659/668 atomic regions from SNP 197448 to 198048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,580 DEBUG Processing 182/553 atomic regions from SNP 54327 to 54927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,734 DEBUG Processing 370/651 atomic regions from SNP 110820 to 111420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,735 DEBUG Processing 668/696 atomic regions from SNP 200110 to 200710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,751 DEBUG Processing 297/589 atomic regions from SNP 88822 to 89422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,872 DEBUG Processing 183/553 atomic regions from SNP 54627 to 55227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,873 DEBUG Processing 660/668 atomic regions from SNP 197748 to 198348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,079 DEBUG Processing 298/589 atomic regions from SNP 89122 to 89722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,093 DEBUG Processing 669/696 atomic regions from SNP 200410 to 201010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,108 DEBUG Processing 371/651 atomic regions from SNP 111120 to 111720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,186 DEBUG Processing 184/553 atomic regions from SNP 54927 to 55527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,190 DEBUG Processing 661/668 atomic regions from SNP 198048 to 198648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,419 DEBUG Processing 299/589 atomic regions from SNP 89422 to 90022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,473 DEBUG Processing 372/651 atomic regions from SNP 111420 to 112020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,486 DEBUG Processing 670/696 atomic regions from SNP 200710 to 201310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,510 DEBUG Processing 185/553 atomic regions from SNP 55227 to 55827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,534 DEBUG Processing 662/668 atomic regions from SNP 198348 to 198948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,774 DEBUG Processing 300/589 atomic regions from SNP 89722 to 90322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,848 DEBUG Processing 373/651 atomic regions from SNP 111720 to 112320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,851 DEBUG Processing 186/553 atomic regions from SNP 55527 to 56127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,876 DEBUG Processing 671/696 atomic regions from SNP 201010 to 201610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,890 DEBUG Processing 663/668 atomic regions from SNP 198648 to 199248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,111 DEBUG Processing 301/589 atomic regions from SNP 90022 to 90622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,174 DEBUG Processing 187/553 atomic regions from SNP 55827 to 56427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,212 DEBUG Processing 374/651 atomic regions from SNP 112020 to 112620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,240 DEBUG Processing 664/668 atomic regions from SNP 198948 to 199548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,275 DEBUG Processing 672/696 atomic regions from SNP 201310 to 201910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,500 DEBUG Processing 302/589 atomic regions from SNP 90322 to 90922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,524 DEBUG Processing 188/553 atomic regions from SNP 56127 to 56727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,577 DEBUG Processing 375/651 atomic regions from SNP 112320 to 112920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,585 DEBUG Processing 665/668 atomic regions from SNP 199248 to 199848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,645 DEBUG Processing 673/696 atomic regions from SNP 201610 to 202210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,747 DEBUG Processing 303/589 atomic regions from SNP 90622 to 91222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,766 DEBUG Processing 189/553 atomic regions from SNP 56427 to 57027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,879 DEBUG Processing 376/651 atomic regions from SNP 112620 to 113220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,882 DEBUG Processing 666/668 atomic regions from SNP 199548 to 200148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,953 DEBUG Processing 674/696 atomic regions from SNP 201910 to 202510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,024 DEBUG Processing 304/589 atomic regions from SNP 90922 to 91522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,035 DEBUG Processing 190/553 atomic regions from SNP 56727 to 57327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,189 DEBUG Processing 377/651 atomic regions from SNP 112920 to 113520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,197 DEBUG Processing 667/668 atomic regions from SNP 199848 to 200448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,272 DEBUG Processing 675/696 atomic regions from SNP 202210 to 202810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,339 DEBUG Processing 191/553 atomic regions from SNP 57027 to 57627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,351 DEBUG Processing 305/589 atomic regions from SNP 91222 to 91822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,532 DEBUG Processing 378/651 atomic regions from SNP 113220 to 113820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,544 DEBUG Processing 668/668 atomic regions from SNP 200148 to 200748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,647 DEBUG Processing 192/553 atomic regions from SNP 57327 to 57927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,657 DEBUG Processing 676/696 atomic regions from SNP 202510 to 203110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,692 DEBUG Processing 306/589 atomic regions from SNP 91522 to 92122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,784 DEBUG Unique SNPs positions in subchromosome 1: 200749 2025-01-31 09:56:19,868 DEBUG Processing 379/651 atomic regions from SNP 113520 to 114120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,949 DEBUG Processing 193/553 atomic regions from SNP 57627 to 58227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,014 DEBUG Processing 677/696 atomic regions from SNP 202810 to 203410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,020 DEBUG Processing 307/589 atomic regions from SNP 91822 to 92422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,203 DEBUG Processing 380/651 atomic regions from SNP 113820 to 114420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,263 DEBUG Processing 194/553 atomic regions from SNP 57927 to 58527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,342 DEBUG Processing 308/589 atomic regions from SNP 92122 to 92722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,355 DEBUG Processing 678/696 atomic regions from SNP 203110 to 203710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,527 DEBUG Processing 381/651 atomic regions from SNP 114120 to 114720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,574 DEBUG Processing 195/553 atomic regions from SNP 58227 to 58827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,651 DEBUG Processing 309/589 atomic regions from SNP 92422 to 93022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,677 DEBUG Processing 679/696 atomic regions from SNP 203410 to 204010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,855 DEBUG Processing 382/651 atomic regions from SNP 114420 to 115020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,889 DEBUG Processing 196/553 atomic regions from SNP 58527 to 59127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,982 DEBUG Processing 310/589 atomic regions from SNP 92722 to 93322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,033 DEBUG Processing 680/696 atomic regions from SNP 203710 to 204310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,195 DEBUG Processing 383/651 atomic regions from SNP 114720 to 115320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,224 DEBUG Processing 197/553 atomic regions from SNP 58827 to 59427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,301 DEBUG Processing 311/589 atomic regions from SNP 93022 to 93622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,384 DEBUG Processing 681/696 atomic regions from SNP 204010 to 204610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,540 DEBUG Processing 384/651 atomic regions from SNP 115020 to 115620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,547 DEBUG Processing 198/553 atomic regions from SNP 59127 to 59727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,636 DEBUG Processing 312/589 atomic regions from SNP 93322 to 93922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,739 DEBUG Processing 682/696 atomic regions from SNP 204310 to 204910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,862 DEBUG Processing 199/553 atomic regions from SNP 59427 to 60027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,865 DEBUG Processing 385/651 atomic regions from SNP 115320 to 115920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,951 DEBUG Processing 313/589 atomic regions from SNP 93622 to 94222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,089 DEBUG Processing 683/696 atomic regions from SNP 204610 to 205210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,169 DEBUG Processing 200/553 atomic regions from SNP 59727 to 60327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,213 DEBUG Processing 386/651 atomic regions from SNP 115620 to 116220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,299 DEBUG Processing 314/589 atomic regions from SNP 93922 to 94522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,476 DEBUG Processing 684/696 atomic regions from SNP 204910 to 205510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,501 DEBUG Processing 201/553 atomic regions from SNP 60027 to 60627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,555 DEBUG Processing 387/651 atomic regions from SNP 115920 to 116520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,656 DEBUG Processing 315/589 atomic regions from SNP 94222 to 94822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,830 DEBUG Processing 202/553 atomic regions from SNP 60327 to 60927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,830 DEBUG Processing 685/696 atomic regions from SNP 205210 to 205810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,892 DEBUG Processing 388/651 atomic regions from SNP 116220 to 116820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,015 DEBUG Processing 316/589 atomic regions from SNP 94522 to 95122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,164 DEBUG Processing 203/553 atomic regions from SNP 60627 to 61227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,213 DEBUG Processing 686/696 atomic regions from SNP 205510 to 206110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,239 DEBUG Processing 389/651 atomic regions from SNP 116520 to 117120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,392 DEBUG Processing 317/589 atomic regions from SNP 94822 to 95422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,493 DEBUG Processing 204/553 atomic regions from SNP 60927 to 61527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,602 DEBUG Processing 687/696 atomic regions from SNP 205810 to 206410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,605 DEBUG Processing 390/651 atomic regions from SNP 116820 to 117420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,743 DEBUG Processing 318/589 atomic regions from SNP 95122 to 95722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,843 DEBUG Processing 205/553 atomic regions from SNP 61227 to 61827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,976 DEBUG Processing 391/651 atomic regions from SNP 117120 to 117720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,017 DEBUG Processing 688/696 atomic regions from SNP 206110 to 206710 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,087 DEBUG Processing 319/589 atomic regions from SNP 95422 to 96022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,173 DEBUG Processing 206/553 atomic regions from SNP 61527 to 62127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,324 DEBUG Processing 392/651 atomic regions from SNP 117420 to 118020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,395 DEBUG Processing 689/696 atomic regions from SNP 206410 to 207010 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,417 DEBUG Processing 320/589 atomic regions from SNP 95722 to 96322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,518 DEBUG Processing 207/553 atomic regions from SNP 61827 to 62427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,674 DEBUG Processing 393/651 atomic regions from SNP 117720 to 118320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,757 DEBUG Processing 321/589 atomic regions from SNP 96022 to 96622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,785 DEBUG Processing 690/696 atomic regions from SNP 206710 to 207310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,869 DEBUG Processing 208/553 atomic regions from SNP 62127 to 62727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,011 DEBUG Processing 394/651 atomic regions from SNP 118020 to 118620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,089 DEBUG Processing 322/589 atomic regions from SNP 96322 to 96922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,180 DEBUG Processing 691/696 atomic regions from SNP 207010 to 207610 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,216 DEBUG Processing 209/553 atomic regions from SNP 62427 to 63027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,332 DEBUG Processing 395/651 atomic regions from SNP 118320 to 118920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,389 DEBUG Processing 323/589 atomic regions from SNP 96622 to 97222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,527 DEBUG Processing 210/553 atomic regions from SNP 62727 to 63327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,550 DEBUG Processing 692/696 atomic regions from SNP 207310 to 207910 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,699 DEBUG Processing 396/651 atomic regions from SNP 118620 to 119220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,705 DEBUG Processing 324/589 atomic regions from SNP 96922 to 97522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,787 DEBUG Processing 211/553 atomic regions from SNP 63027 to 63627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,872 DEBUG Processing 693/696 atomic regions from SNP 207610 to 208210 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,037 DEBUG Processing 325/589 atomic regions from SNP 97222 to 97822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,068 DEBUG Processing 397/651 atomic regions from SNP 118920 to 119520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,107 DEBUG Processing 212/553 atomic regions from SNP 63327 to 63927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,176 DEBUG Processing 694/696 atomic regions from SNP 207910 to 208510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,368 DEBUG Processing 326/589 atomic regions from SNP 97522 to 98122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,442 DEBUG Processing 398/651 atomic regions from SNP 119220 to 119820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,460 DEBUG Processing 213/553 atomic regions from SNP 63627 to 64227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,523 DEBUG Processing 695/696 atomic regions from SNP 208210 to 208810 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,708 DEBUG Subchromosome time: 194.40654000267386, subchromosome SNPs: 200749 2025-01-31 09:56:26,708 DEBUG Estimated BADs: [0.60, 9.52, 1.19, 11.90, 0.20, 11.90, 2.38, 0.20, 1.19, 3.57, 1.19, 2.38, 1.19, 4.76, 1.19, 2.38, 0.60, 3.57, 1.19, 3.57, 1.19, 11.90, 0.30, 2.38, 8.33, 1.19, 0.40, 2.38, 1.19, 3.57, 1.19, 0.40, 2.38] SNP counts: [29916, 241, 759, 549, 1651, 907, 2697, 4509, 17272, 1468, 8329, 11646, 8629, 2173, 4753, 5153, 2781, 2310, 12686, 1436, 7065, 100, 4479, 1356, 291, 3454, 11980, 19682, 17850, 2123, 4495, 7103, 906] SNP IDs counts: [29916, 241, 759, 549, 1651, 907, 2697, 4509, 17272, 1468, 8329, 11646, 8629, 2173, 4753, 5153, 2781, 2310, 12686, 1436, 7065, 100, 4479, 1356, 291, 3454, 11980, 19682, 17850, 2123, 4495, 7103, 906] Critical gap: 601378bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 21.28Mbp, 21.71Mbp, 22.05Mbp, 23.26Mbp, 23.77Mbp, 25.25Mbp, 28.01Mbp, 37.82Mbp, 38.59Mbp, 43.16Mbp, 49.34Mbp, 54.44Mbp, 55.59Mbp, 58.11Mbp, 60.87Mbp, 63.10Mbp, 64.34Mbp, 73.25Mbp, 74.00Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 81.63Mbp, 81.79Mbp, 83.75Mbp, 90.90Mbp, 101.69Mbp, 111.68Mbp, 112.81Mbp, 115.26Mbp, 119.36Mbp, 120.42Mbp] 2025-01-31 09:56:26,708 DEBUG chr13 time: 194.40706345066428 s 2025-01-31 09:56:26,710 DEBUG Processing 327/589 atomic regions from SNP 97822 to 98422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,818 DEBUG Processing 214/553 atomic regions from SNP 63927 to 64527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,854 DEBUG Processing 399/651 atomic regions from SNP 119520 to 120120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,894 DEBUG Processing 696/696 atomic regions from SNP 208510 to 209110 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,924 DEBUG chr13: Fitting background model for 33 segments 2025-01-31 09:56:27,062 DEBUG Processing 328/589 atomic regions from SNP 98122 to 98722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,161 DEBUG Unique SNPs positions in subchromosome 1: 209111 2025-01-31 09:56:27,170 DEBUG Processing 215/553 atomic regions from SNP 64227 to 64827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,244 DEBUG Processing 400/651 atomic regions from SNP 119820 to 120420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,358 DEBUG Processing 329/589 atomic regions from SNP 98422 to 99022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,436 DEBUG Processing 216/553 atomic regions from SNP 64527 to 65127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,586 DEBUG Processing 401/651 atomic regions from SNP 120120 to 120720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,634 DEBUG Processing 330/589 atomic regions from SNP 98722 to 99322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,696 DEBUG Processing 217/553 atomic regions from SNP 64827 to 65427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,917 DEBUG Processing 402/651 atomic regions from SNP 120420 to 121020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,958 DEBUG Processing 331/589 atomic regions from SNP 99022 to 99622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,982 DEBUG Processing 218/553 atomic regions from SNP 65127 to 65727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,244 DEBUG Processing 403/651 atomic regions from SNP 120720 to 121320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,287 DEBUG Processing 219/553 atomic regions from SNP 65427 to 66027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,306 DEBUG Processing 332/589 atomic regions from SNP 99322 to 99922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,489 DEBUG Processing 404/651 atomic regions from SNP 121020 to 121620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,490 DEBUG Processing 220/553 atomic regions from SNP 65727 to 66327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,544 DEBUG Processing 333/589 atomic regions from SNP 99622 to 100222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,737 DEBUG Processing 221/553 atomic regions from SNP 66027 to 66627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,780 DEBUG Processing 405/651 atomic regions from SNP 121320 to 121920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,807 DEBUG Processing 334/589 atomic regions from SNP 99922 to 100522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,937 DEBUG Processing 222/553 atomic regions from SNP 66327 to 66927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,015 DEBUG Processing 406/651 atomic regions from SNP 121620 to 122220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,052 DEBUG Processing 335/589 atomic regions from SNP 100222 to 100822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,128 DEBUG Processing 223/553 atomic regions from SNP 66627 to 67227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,255 DEBUG Processing 407/651 atomic regions from SNP 121920 to 122520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,315 DEBUG Processing 336/589 atomic regions from SNP 100522 to 101122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,348 DEBUG Processing 224/553 atomic regions from SNP 66927 to 67527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,482 DEBUG Processing 408/651 atomic regions from SNP 122220 to 122820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,537 DEBUG Processing 337/589 atomic regions from SNP 100822 to 101422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,541 DEBUG Processing 225/553 atomic regions from SNP 67227 to 67827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,701 DEBUG Processing 409/651 atomic regions from SNP 122520 to 123120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,734 DEBUG Processing 226/553 atomic regions from SNP 67527 to 68127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,757 DEBUG Processing 338/589 atomic regions from SNP 101122 to 101722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,921 DEBUG Processing 410/651 atomic regions from SNP 122820 to 123420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,928 DEBUG Processing 227/553 atomic regions from SNP 67827 to 68427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,977 DEBUG Processing 339/589 atomic regions from SNP 101422 to 102022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,128 DEBUG Processing 228/553 atomic regions from SNP 68127 to 68727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,158 DEBUG Processing 411/651 atomic regions from SNP 123120 to 123720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,207 DEBUG Processing 340/589 atomic regions from SNP 101722 to 102322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,329 DEBUG Processing 229/553 atomic regions from SNP 68427 to 69027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,386 DEBUG Processing 412/651 atomic regions from SNP 123420 to 124020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,454 DEBUG Processing 341/589 atomic regions from SNP 102022 to 102622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,530 DEBUG Processing 230/553 atomic regions from SNP 68727 to 69327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,613 DEBUG Processing 413/651 atomic regions from SNP 123720 to 124320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,673 DEBUG Processing 342/589 atomic regions from SNP 102322 to 102922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,727 DEBUG Processing 231/553 atomic regions from SNP 69027 to 69627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,853 DEBUG Processing 414/651 atomic regions from SNP 124020 to 124620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,906 DEBUG Processing 343/589 atomic regions from SNP 102622 to 103222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,948 DEBUG Processing 232/553 atomic regions from SNP 69327 to 69927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,084 DEBUG Processing 415/651 atomic regions from SNP 124320 to 124920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,162 DEBUG Processing 344/589 atomic regions from SNP 102922 to 103522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,184 DEBUG Processing 233/553 atomic regions from SNP 69627 to 70227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,314 DEBUG Processing 416/651 atomic regions from SNP 124620 to 125220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,429 DEBUG Processing 345/589 atomic regions from SNP 103222 to 103822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,431 DEBUG Processing 234/553 atomic regions from SNP 69927 to 70527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,568 DEBUG Processing 417/651 atomic regions from SNP 124920 to 125520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,664 DEBUG Processing 235/553 atomic regions from SNP 70227 to 70827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,691 DEBUG Processing 346/589 atomic regions from SNP 103522 to 104122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,858 DEBUG Processing 418/651 atomic regions from SNP 125220 to 125820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,886 DEBUG Processing 236/553 atomic regions from SNP 70527 to 71127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,924 DEBUG Processing 347/589 atomic regions from SNP 103822 to 104422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,092 DEBUG Processing 419/651 atomic regions from SNP 125520 to 126120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,094 DEBUG Processing 237/553 atomic regions from SNP 70827 to 71427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,144 DEBUG Processing 348/589 atomic regions from SNP 104122 to 104722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,293 DEBUG Processing 238/553 atomic regions from SNP 71127 to 71727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,345 DEBUG Processing 420/651 atomic regions from SNP 125820 to 126420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,361 DEBUG Processing 349/589 atomic regions from SNP 104422 to 105022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,489 DEBUG Processing 239/553 atomic regions from SNP 71427 to 72027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,580 DEBUG Processing 421/651 atomic regions from SNP 126120 to 126720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,587 DEBUG Processing 350/589 atomic regions from SNP 104722 to 105322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,681 DEBUG Processing 240/553 atomic regions from SNP 71727 to 72327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,809 DEBUG Processing 351/589 atomic regions from SNP 105022 to 105622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,824 DEBUG Processing 422/651 atomic regions from SNP 126420 to 127020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,874 DEBUG Processing 241/553 atomic regions from SNP 72027 to 72627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,035 DEBUG Processing 352/589 atomic regions from SNP 105322 to 105922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,070 DEBUG Processing 242/553 atomic regions from SNP 72327 to 72927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,077 DEBUG Processing 423/651 atomic regions from SNP 126720 to 127320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,260 DEBUG Processing 353/589 atomic regions from SNP 105622 to 106222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,271 DEBUG Processing 243/553 atomic regions from SNP 72627 to 73227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,327 DEBUG Processing 424/651 atomic regions from SNP 127020 to 127620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,500 DEBUG Processing 244/553 atomic regions from SNP 72927 to 73527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,511 DEBUG Processing 354/589 atomic regions from SNP 105922 to 106522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,604 DEBUG Processing 425/651 atomic regions from SNP 127320 to 127920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,772 DEBUG Processing 245/553 atomic regions from SNP 73227 to 73827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,796 DEBUG Processing 355/589 atomic regions from SNP 106222 to 106822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,894 DEBUG Processing 426/651 atomic regions from SNP 127620 to 128220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,045 DEBUG Processing 246/553 atomic regions from SNP 73527 to 74127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,100 DEBUG Processing 356/589 atomic regions from SNP 106522 to 107122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,177 DEBUG Processing 427/651 atomic regions from SNP 127920 to 128520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,373 DEBUG Processing 247/553 atomic regions from SNP 73827 to 74427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,449 DEBUG Processing 357/589 atomic regions from SNP 106822 to 107422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,513 DEBUG Processing 428/651 atomic regions from SNP 128220 to 128820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,700 DEBUG Processing 248/553 atomic regions from SNP 74127 to 74727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,793 DEBUG Processing 358/589 atomic regions from SNP 107122 to 107722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,854 DEBUG Processing 429/651 atomic regions from SNP 128520 to 129120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,032 DEBUG Processing 249/553 atomic regions from SNP 74427 to 75027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,111 DEBUG Processing 359/589 atomic regions from SNP 107422 to 108022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,175 DEBUG Processing 430/651 atomic regions from SNP 128820 to 129420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,299 DEBUG Processing 250/553 atomic regions from SNP 74727 to 75327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,372 DEBUG Processing 360/589 atomic regions from SNP 107722 to 108322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,410 DEBUG Processing 431/651 atomic regions from SNP 129120 to 129720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,541 DEBUG Processing 251/553 atomic regions from SNP 75027 to 75627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,642 DEBUG Processing 361/589 atomic regions from SNP 108022 to 108622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,666 DEBUG Processing 432/651 atomic regions from SNP 129420 to 130020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,703 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:56:35,705 DEBUG chr17: Signal quantile: 0.987. signal threshold: 11. Best RMSEA: 0.012 2025-01-31 09:56:35,734 DEBUG Processing 252/553 atomic regions from SNP 75327 to 75927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,869 DEBUG Processing 362/589 atomic regions from SNP 108322 to 108922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,903 DEBUG Processing 433/651 atomic regions from SNP 129720 to 130320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,930 DEBUG Processing 253/553 atomic regions from SNP 75627 to 76227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,116 DEBUG Processing 363/589 atomic regions from SNP 108622 to 109222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,150 DEBUG Processing 434/651 atomic regions from SNP 130020 to 130620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,164 DEBUG Processing 254/553 atomic regions from SNP 75927 to 76527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,385 DEBUG Processing 364/589 atomic regions from SNP 108922 to 109522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,398 DEBUG Processing 255/553 atomic regions from SNP 76227 to 76827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,413 DEBUG Processing 435/651 atomic regions from SNP 130320 to 130920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,697 DEBUG Processing 256/553 atomic regions from SNP 76527 to 77127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,703 DEBUG Processing 365/589 atomic regions from SNP 109222 to 109822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,736 DEBUG Processing 436/651 atomic regions from SNP 130620 to 131220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,932 DEBUG Processing 257/553 atomic regions from SNP 76827 to 77427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,973 DEBUG Processing 366/589 atomic regions from SNP 109522 to 110122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,000 DEBUG Processing 437/651 atomic regions from SNP 130920 to 131520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,204 DEBUG Processing 258/553 atomic regions from SNP 77127 to 77727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,252 DEBUG Processing 367/589 atomic regions from SNP 109822 to 110422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,291 DEBUG Processing 438/651 atomic regions from SNP 131220 to 131820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,416 DEBUG Processing 259/553 atomic regions from SNP 77427 to 78027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,513 DEBUG Processing 368/589 atomic regions from SNP 110122 to 110722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,561 DEBUG Processing 439/651 atomic regions from SNP 131520 to 132120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,624 DEBUG Processing 260/553 atomic regions from SNP 77727 to 78327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,807 DEBUG Processing 369/589 atomic regions from SNP 110422 to 111022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,864 DEBUG Processing 261/553 atomic regions from SNP 78027 to 78627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,869 DEBUG Processing 440/651 atomic regions from SNP 131820 to 132420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,114 DEBUG Processing 370/589 atomic regions from SNP 110722 to 111322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,139 DEBUG Processing 262/553 atomic regions from SNP 78327 to 78927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,172 DEBUG chr17 total SNP count: 157867 2025-01-31 09:56:38,172 DEBUG chr17 length: 94987271 2025-01-31 09:56:38,172 DEBUG ----------------------------------------- 2025-01-31 09:56:38,172 INFO Processing SNPs in chr17 2025-01-31 09:56:38,212 DEBUG Processing 441/651 atomic regions from SNP 132120 to 132720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,338 DEBUG Processing 263/553 atomic regions from SNP 78627 to 79227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,345 DEBUG Processing 371/589 atomic regions from SNP 111022 to 111622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,359 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 157867)] 2025-01-31 09:56:38,467 DEBUG Processing 442/651 atomic regions from SNP 132420 to 133020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,482 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:38,530 DEBUG Processing 264/553 atomic regions from SNP 78927 to 79527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,554 DEBUG Processing 372/589 atomic regions from SNP 111322 to 111922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,703 DEBUG Processing 443/651 atomic regions from SNP 132720 to 133320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,721 DEBUG Processing 265/553 atomic regions from SNP 79227 to 79827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,764 DEBUG Processing 373/589 atomic regions from SNP 111622 to 112222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,939 DEBUG Processing 266/553 atomic regions from SNP 79527 to 80127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,968 DEBUG Processing 444/651 atomic regions from SNP 133020 to 133620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,996 DEBUG Processing 374/589 atomic regions from SNP 111922 to 112522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,145 DEBUG Processing 267/553 atomic regions from SNP 79827 to 80427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,263 DEBUG Processing 375/589 atomic regions from SNP 112222 to 112822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,263 DEBUG Processing 445/651 atomic regions from SNP 133320 to 133920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,334 DEBUG Processing 268/553 atomic regions from SNP 80127 to 80727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,481 DEBUG Processing 376/589 atomic regions from SNP 112522 to 113122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,504 DEBUG Processing 446/651 atomic regions from SNP 133620 to 134220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,522 DEBUG Processing 269/553 atomic regions from SNP 80427 to 81027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,695 DEBUG Processing 377/589 atomic regions from SNP 112822 to 113422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,712 DEBUG Processing 270/553 atomic regions from SNP 80727 to 81327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,732 DEBUG Processing 447/651 atomic regions from SNP 133920 to 134520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,905 DEBUG Processing 271/553 atomic regions from SNP 81027 to 81627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,908 DEBUG Processing 378/589 atomic regions from SNP 113122 to 113722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,975 DEBUG Processing 448/651 atomic regions from SNP 134220 to 134820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,126 DEBUG Processing 272/553 atomic regions from SNP 81327 to 81927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,171 DEBUG Processing 379/589 atomic regions from SNP 113422 to 114022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,264 DEBUG Processing 449/651 atomic regions from SNP 134520 to 135120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,336 DEBUG Processing 273/553 atomic regions from SNP 81627 to 82227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,400 DEBUG Processing 380/589 atomic regions from SNP 113722 to 114322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,496 DEBUG Processing 450/651 atomic regions from SNP 134820 to 135420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,532 DEBUG Processing 274/553 atomic regions from SNP 81927 to 82527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,652 DEBUG Processing 381/589 atomic regions from SNP 114022 to 114622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,731 DEBUG Processing 275/553 atomic regions from SNP 82227 to 82827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,757 DEBUG Processing 451/651 atomic regions from SNP 135120 to 135720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,858 DEBUG Processing 382/589 atomic regions from SNP 114322 to 114922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,927 DEBUG Processing 276/553 atomic regions from SNP 82527 to 83127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,004 DEBUG Processing 452/651 atomic regions from SNP 135420 to 136020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,064 DEBUG Processing 383/589 atomic regions from SNP 114622 to 115222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,143 DEBUG Processing 277/553 atomic regions from SNP 82827 to 83427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,233 DEBUG Processing 453/651 atomic regions from SNP 135720 to 136320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,268 DEBUG Processing 384/589 atomic regions from SNP 114922 to 115522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,340 DEBUG Processing 278/553 atomic regions from SNP 83127 to 83727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,449 DEBUG Processing 454/651 atomic regions from SNP 136020 to 136620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,477 DEBUG Processing 385/589 atomic regions from SNP 115222 to 115822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,568 DEBUG Processing 279/553 atomic regions from SNP 83427 to 84027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,682 DEBUG Processing 455/651 atomic regions from SNP 136320 to 136920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,696 DEBUG Processing 386/589 atomic regions from SNP 115522 to 116122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,765 DEBUG Processing 280/553 atomic regions from SNP 83727 to 84327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,928 DEBUG Processing 456/651 atomic regions from SNP 136620 to 137220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,946 DEBUG Processing 387/589 atomic regions from SNP 115822 to 116422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,989 DEBUG Processing 281/553 atomic regions from SNP 84027 to 84627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,145 DEBUG Processing 457/651 atomic regions from SNP 136920 to 137520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,156 DEBUG Processing 388/589 atomic regions from SNP 116122 to 116722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,188 DEBUG Processing 282/553 atomic regions from SNP 84327 to 84927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,360 DEBUG Processing 458/651 atomic regions from SNP 137220 to 137820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,365 DEBUG Processing 389/589 atomic regions from SNP 116422 to 117022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,381 DEBUG Processing 283/553 atomic regions from SNP 84627 to 85227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,577 DEBUG Processing 284/553 atomic regions from SNP 84927 to 85527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,578 DEBUG Processing 390/589 atomic regions from SNP 116722 to 117322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,581 DEBUG Processing 459/651 atomic regions from SNP 137520 to 138120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,771 DEBUG Processing 285/553 atomic regions from SNP 85227 to 85827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,791 DEBUG Processing 391/589 atomic regions from SNP 117022 to 117622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,803 DEBUG Processing 460/651 atomic regions from SNP 137820 to 138420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,962 DEBUG Processing 286/553 atomic regions from SNP 85527 to 86127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,998 DEBUG Processing 392/589 atomic regions from SNP 117322 to 117922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,038 DEBUG Processing 461/651 atomic regions from SNP 138120 to 138720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,151 DEBUG Processing 287/553 atomic regions from SNP 85827 to 86427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,213 DEBUG Processing 393/589 atomic regions from SNP 117622 to 118222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,313 DEBUG Processing 462/651 atomic regions from SNP 138420 to 139020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,393 DEBUG Processing 288/553 atomic regions from SNP 86127 to 86727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,440 DEBUG Processing 394/589 atomic regions from SNP 117922 to 118522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,613 DEBUG Processing 463/651 atomic regions from SNP 138720 to 139320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,654 DEBUG Processing 289/553 atomic regions from SNP 86427 to 87027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,717 DEBUG Processing 395/589 atomic regions from SNP 118222 to 118822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,936 DEBUG Processing 290/553 atomic regions from SNP 86727 to 87327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,952 DEBUG Processing 464/651 atomic regions from SNP 139020 to 139620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,999 DEBUG Processing 396/589 atomic regions from SNP 118522 to 119122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,196 DEBUG Processing 291/553 atomic regions from SNP 87027 to 87627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,244 DEBUG Processing 397/589 atomic regions from SNP 118822 to 119422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,246 DEBUG Processing 465/651 atomic regions from SNP 139320 to 139920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,396 DEBUG Processing 292/553 atomic regions from SNP 87327 to 87927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,471 DEBUG Processing 398/589 atomic regions from SNP 119122 to 119722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,482 DEBUG Processing 466/651 atomic regions from SNP 139620 to 140220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,588 DEBUG Processing 293/553 atomic regions from SNP 87627 to 88227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,703 DEBUG Processing 399/589 atomic regions from SNP 119422 to 120022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,719 DEBUG Processing 467/651 atomic regions from SNP 139920 to 140520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,803 DEBUG Processing 294/553 atomic regions from SNP 87927 to 88527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,942 DEBUG Processing 400/589 atomic regions from SNP 119722 to 120322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,973 DEBUG Processing 468/651 atomic regions from SNP 140220 to 140820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,049 DEBUG Processing 295/553 atomic regions from SNP 88227 to 88827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,210 DEBUG Processing 401/589 atomic regions from SNP 120022 to 120622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,246 DEBUG Processing 469/651 atomic regions from SNP 140520 to 141120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,315 DEBUG Processing 296/553 atomic regions from SNP 88527 to 89127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,448 DEBUG Processing 402/589 atomic regions from SNP 120322 to 120922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,472 DEBUG Processing 470/651 atomic regions from SNP 140820 to 141420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,509 DEBUG Processing 297/553 atomic regions from SNP 88827 to 89427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,702 DEBUG Processing 403/589 atomic regions from SNP 120622 to 121222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,706 DEBUG Processing 298/553 atomic regions from SNP 89127 to 89727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,709 DEBUG Processing 471/651 atomic regions from SNP 141120 to 141720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,952 DEBUG Processing 299/553 atomic regions from SNP 89427 to 90027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,963 DEBUG Processing 404/589 atomic regions from SNP 120922 to 121522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,971 DEBUG Processing 472/651 atomic regions from SNP 141420 to 142020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,185 DEBUG Processing 300/553 atomic regions from SNP 89727 to 90327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,218 DEBUG Processing 405/589 atomic regions from SNP 121222 to 121822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,228 DEBUG Processing 473/651 atomic regions from SNP 141720 to 142320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,390 DEBUG Processing 301/553 atomic regions from SNP 90027 to 90627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,442 DEBUG Processing 406/589 atomic regions from SNP 121522 to 122122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,444 DEBUG Processing 474/651 atomic regions from SNP 142020 to 142620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,586 DEBUG Processing 302/553 atomic regions from SNP 90327 to 90927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,660 DEBUG Processing 475/651 atomic regions from SNP 142320 to 142920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,678 DEBUG Processing 407/589 atomic regions from SNP 121822 to 122422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,780 DEBUG Processing 303/553 atomic regions from SNP 90627 to 91227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,877 DEBUG Processing 476/651 atomic regions from SNP 142620 to 143220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,891 DEBUG Processing 408/589 atomic regions from SNP 122122 to 122722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,978 DEBUG Processing 304/553 atomic regions from SNP 90927 to 91527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,134 DEBUG Processing 477/651 atomic regions from SNP 142920 to 143520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,147 DEBUG Processing 409/589 atomic regions from SNP 122422 to 123022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,267 DEBUG Processing 305/553 atomic regions from SNP 91227 to 91827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,423 DEBUG Processing 478/651 atomic regions from SNP 143220 to 143820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,425 DEBUG Processing 410/589 atomic regions from SNP 122722 to 123322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,559 DEBUG Processing 306/553 atomic regions from SNP 91527 to 92127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,747 DEBUG Processing 411/589 atomic regions from SNP 123022 to 123622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,756 DEBUG Processing 479/651 atomic regions from SNP 143520 to 144120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,865 DEBUG Processing 307/553 atomic regions from SNP 91827 to 92427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,061 DEBUG Processing 412/589 atomic regions from SNP 123322 to 123922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,075 DEBUG Processing 480/651 atomic regions from SNP 143820 to 144420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,159 DEBUG Processing 308/553 atomic regions from SNP 92127 to 92727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,283 DEBUG Processing 413/589 atomic regions from SNP 123622 to 124222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,305 DEBUG Processing 481/651 atomic regions from SNP 144120 to 144720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,364 DEBUG Processing 309/553 atomic regions from SNP 92427 to 93027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,509 DEBUG Processing 414/589 atomic regions from SNP 123922 to 124522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,536 DEBUG Processing 482/651 atomic regions from SNP 144420 to 145020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,582 DEBUG Processing 310/553 atomic regions from SNP 92727 to 93327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,753 DEBUG Processing 415/589 atomic regions from SNP 124222 to 124822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,782 DEBUG Processing 483/651 atomic regions from SNP 144720 to 145320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,864 DEBUG Processing 311/553 atomic regions from SNP 93027 to 93627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,017 DEBUG Processing 416/589 atomic regions from SNP 124522 to 125122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,049 DEBUG Processing 484/651 atomic regions from SNP 145020 to 145620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,150 DEBUG Processing 312/553 atomic regions from SNP 93327 to 93927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,262 DEBUG Processing 417/589 atomic regions from SNP 124822 to 125422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,326 DEBUG Processing 485/651 atomic regions from SNP 145320 to 145920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,417 DEBUG Processing 313/553 atomic regions from SNP 93627 to 94227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,437 DEBUG Subchromosome time: 228.66261775419116, subchromosome SNPs: 209111 2025-01-31 09:56:49,438 DEBUG Estimated BADs: [14.73, 2.95, 0.74, 0.15, 0.74, 0.16, 0.74, 0.18, 1.47, 0.21, 1.47, 0.37, 0.74, 13.26, 1.47, 0.37, 2.95, 0.74, 14.73, 5.89, 1.47, 2.95, 0.49, 2.95, 0.37, 2.95, 4.42, 0.74, 2.95, 1.47, 0.29, 0.74, 4.42, 2.95] SNP counts: [148, 6363, 4149, 2939, 2420, 5383, 2096, 3295, 8411, 7193, 9308, 17794, 7414, 200, 11824, 3418, 10352, 10326, 306, 3611, 6405, 11454, 3066, 12231, 6923, 6279, 4801, 1327, 15168, 3644, 4158, 4053, 4947, 7705] SNP IDs counts: [148, 6363, 4149, 2939, 2420, 5383, 2096, 3295, 8411, 7193, 9308, 17794, 7414, 200, 11824, 3418, 10352, 10326, 306, 3611, 6405, 11454, 3066, 12231, 6923, 6279, 4801, 1327, 15168, 3644, 4158, 4053, 4947, 7705] Critical gap: 597100bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.68Mbp, 9.15Mbp, 11.05Mbp, 12.46Mbp, 16.01Mbp, 17.30Mbp, 19.35Mbp, 24.10Mbp, 28.56Mbp, 33.84Mbp, 44.45Mbp, 48.77Mbp, 48.88Mbp, 55.55Mbp, 57.53Mbp, 63.24Mbp, 68.97Mbp, 69.13Mbp, 71.07Mbp, 74.83Mbp, 81.05Mbp, 82.75Mbp, 89.44Mbp, 93.51Mbp, 96.91Mbp, 99.49Mbp, 100.28Mbp, 108.53Mbp, 110.54Mbp, 112.90Mbp, 115.15Mbp, 117.81Mbp, 122.08Mbp] 2025-01-31 09:56:49,438 DEBUG chr11 time: 228.66324073821306 s 2025-01-31 09:56:49,486 DEBUG Processing 418/589 atomic regions from SNP 125122 to 125722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,544 DEBUG Processing 486/651 atomic regions from SNP 145620 to 146220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,608 DEBUG chr11: Fitting background model for 34 segments 2025-01-31 09:56:49,669 DEBUG Processing 314/553 atomic regions from SNP 93927 to 94527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,757 DEBUG Processing 419/589 atomic regions from SNP 125422 to 126022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,785 DEBUG Processing 487/651 atomic regions from SNP 145920 to 146520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,911 DEBUG Processing 315/553 atomic regions from SNP 94227 to 94827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,070 DEBUG Processing 488/651 atomic regions from SNP 146220 to 146820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,072 DEBUG Processing 420/589 atomic regions from SNP 125722 to 126322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,116 DEBUG Processing 316/553 atomic regions from SNP 94527 to 95127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,304 DEBUG Processing 489/651 atomic regions from SNP 146520 to 147120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,320 DEBUG Processing 317/553 atomic regions from SNP 94827 to 95427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,330 DEBUG Processing 421/589 atomic regions from SNP 126022 to 126622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,514 DEBUG Processing 318/553 atomic regions from SNP 95127 to 95727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,525 DEBUG Processing 490/651 atomic regions from SNP 146820 to 147420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,584 DEBUG Processing 422/589 atomic regions from SNP 126322 to 126922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,706 DEBUG Processing 319/553 atomic regions from SNP 95427 to 96027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,743 DEBUG Processing 491/651 atomic regions from SNP 147120 to 147720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,829 DEBUG Processing 423/589 atomic regions from SNP 126622 to 127222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,897 DEBUG Processing 320/553 atomic regions from SNP 95727 to 96327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,957 DEBUG Processing 492/651 atomic regions from SNP 147420 to 148020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,079 DEBUG Processing 424/589 atomic regions from SNP 126922 to 127522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,092 DEBUG Processing 321/553 atomic regions from SNP 96027 to 96627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,173 DEBUG Processing 493/651 atomic regions from SNP 147720 to 148320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,283 DEBUG Processing 322/553 atomic regions from SNP 96327 to 96927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,321 DEBUG Processing 425/589 atomic regions from SNP 127222 to 127822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,390 DEBUG Processing 494/651 atomic regions from SNP 148020 to 148620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,476 DEBUG Processing 323/553 atomic regions from SNP 96627 to 97227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,562 DEBUG Processing 426/589 atomic regions from SNP 127522 to 128122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,608 DEBUG Processing 495/651 atomic regions from SNP 148320 to 148920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,667 DEBUG Processing 324/553 atomic regions from SNP 96927 to 97527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,786 DEBUG Processing 427/589 atomic regions from SNP 127822 to 128422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,829 DEBUG Processing 496/651 atomic regions from SNP 148620 to 149220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,878 DEBUG Processing 325/553 atomic regions from SNP 97227 to 97827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,015 DEBUG Processing 428/589 atomic regions from SNP 128122 to 128722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,049 DEBUG Processing 497/651 atomic regions from SNP 148920 to 149520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,087 DEBUG Processing 326/553 atomic regions from SNP 97527 to 98127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,253 DEBUG Processing 429/589 atomic regions from SNP 128422 to 129022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,264 DEBUG Processing 498/651 atomic regions from SNP 149220 to 149820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,274 DEBUG Processing 327/553 atomic regions from SNP 97827 to 98427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,465 DEBUG Processing 328/553 atomic regions from SNP 98127 to 98727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,475 DEBUG Processing 430/589 atomic regions from SNP 128722 to 129322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,488 DEBUG Processing 499/651 atomic regions from SNP 149520 to 150120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,685 DEBUG Processing 329/553 atomic regions from SNP 98427 to 99027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,757 DEBUG Processing 500/651 atomic regions from SNP 149820 to 150420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,768 DEBUG Processing 431/589 atomic regions from SNP 129022 to 129622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,912 DEBUG Processing 330/553 atomic regions from SNP 98727 to 99327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,033 DEBUG Processing 501/651 atomic regions from SNP 150120 to 150720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,059 DEBUG Processing 432/589 atomic regions from SNP 129322 to 129922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,105 DEBUG Processing 331/553 atomic regions from SNP 99027 to 99627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,255 DEBUG Processing 502/651 atomic regions from SNP 150420 to 151020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,288 DEBUG Processing 433/589 atomic regions from SNP 129622 to 130222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,300 DEBUG Processing 332/553 atomic regions from SNP 99327 to 99927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,473 DEBUG Processing 503/651 atomic regions from SNP 150720 to 151320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,493 DEBUG Processing 333/553 atomic regions from SNP 99627 to 100227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,534 DEBUG Processing 434/589 atomic regions from SNP 129922 to 130522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,684 DEBUG Processing 334/553 atomic regions from SNP 99927 to 100527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,692 DEBUG Processing 504/651 atomic regions from SNP 151020 to 151620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,823 DEBUG Processing 435/589 atomic regions from SNP 130222 to 130822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,881 DEBUG Processing 335/553 atomic regions from SNP 100227 to 100827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,912 DEBUG Processing 505/651 atomic regions from SNP 151320 to 151920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,067 DEBUG Processing 436/589 atomic regions from SNP 130522 to 131122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,074 DEBUG Processing 336/553 atomic regions from SNP 100527 to 101127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,129 DEBUG Processing 506/651 atomic regions from SNP 151620 to 152220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,268 DEBUG Processing 337/553 atomic regions from SNP 100827 to 101427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,296 DEBUG Processing 437/589 atomic regions from SNP 130822 to 131422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,353 DEBUG Processing 507/651 atomic regions from SNP 151920 to 152520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,465 DEBUG Processing 338/553 atomic regions from SNP 101127 to 101727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,564 DEBUG Processing 438/589 atomic regions from SNP 131122 to 131722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,583 DEBUG Processing 508/651 atomic regions from SNP 152220 to 152820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,663 DEBUG Processing 339/553 atomic regions from SNP 101427 to 102027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,815 DEBUG Processing 509/651 atomic regions from SNP 152520 to 153120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,830 DEBUG Processing 439/589 atomic regions from SNP 131422 to 132022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,862 DEBUG Processing 340/553 atomic regions from SNP 101727 to 102327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,043 DEBUG Processing 510/651 atomic regions from SNP 152820 to 153420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,061 DEBUG Processing 341/553 atomic regions from SNP 102027 to 102627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,086 DEBUG Processing 440/589 atomic regions from SNP 131722 to 132322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,261 DEBUG Processing 342/553 atomic regions from SNP 102327 to 102927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,271 DEBUG Processing 511/651 atomic regions from SNP 153120 to 153720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,330 DEBUG Processing 441/589 atomic regions from SNP 132022 to 132622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,460 DEBUG Processing 343/553 atomic regions from SNP 102627 to 103227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,495 DEBUG Processing 512/651 atomic regions from SNP 153420 to 154020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,573 DEBUG Processing 442/589 atomic regions from SNP 132322 to 132922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,661 DEBUG Processing 344/553 atomic regions from SNP 102927 to 103527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,716 DEBUG Processing 513/651 atomic regions from SNP 153720 to 154320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,822 DEBUG Processing 443/589 atomic regions from SNP 132622 to 133222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,859 DEBUG Processing 345/553 atomic regions from SNP 103227 to 103827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,935 DEBUG Processing 514/651 atomic regions from SNP 154020 to 154620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,053 DEBUG Processing 346/553 atomic regions from SNP 103527 to 104127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,069 DEBUG Processing 444/589 atomic regions from SNP 132922 to 133522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,161 DEBUG Processing 515/651 atomic regions from SNP 154320 to 154920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,251 DEBUG Processing 347/553 atomic regions from SNP 103827 to 104427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,325 DEBUG Processing 445/589 atomic regions from SNP 133222 to 133822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,383 DEBUG Processing 516/651 atomic regions from SNP 154620 to 155220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,444 DEBUG Processing 348/553 atomic regions from SNP 104127 to 104727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,586 DEBUG Processing 446/589 atomic regions from SNP 133522 to 134122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,608 DEBUG Processing 517/651 atomic regions from SNP 154920 to 155520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,635 DEBUG Processing 349/553 atomic regions from SNP 104427 to 105027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,827 DEBUG Processing 350/553 atomic regions from SNP 104727 to 105327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,828 DEBUG Processing 447/589 atomic regions from SNP 133822 to 134422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,831 DEBUG Processing 518/651 atomic regions from SNP 155220 to 155820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,020 DEBUG Processing 351/553 atomic regions from SNP 105027 to 105627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,049 DEBUG Processing 448/589 atomic regions from SNP 134122 to 134722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,056 DEBUG Processing 519/651 atomic regions from SNP 155520 to 156120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,217 DEBUG Processing 352/553 atomic regions from SNP 105327 to 105927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,282 DEBUG Processing 520/651 atomic regions from SNP 155820 to 156420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,295 DEBUG Processing 449/589 atomic regions from SNP 134422 to 135022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,412 DEBUG Processing 353/553 atomic regions from SNP 105627 to 106227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,514 DEBUG Processing 521/651 atomic regions from SNP 156120 to 156720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,551 DEBUG Processing 450/589 atomic regions from SNP 134722 to 135322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,605 DEBUG Processing 354/553 atomic regions from SNP 105927 to 106527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,719 DEBUG Segmenting atomic regions: 2025-01-31 09:56:57,740 DEBUG Processing 522/651 atomic regions from SNP 156420 to 157020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,796 DEBUG Processing 451/589 atomic regions from SNP 135022 to 135622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,797 DEBUG Processing 1/525 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,798 DEBUG Processing 355/553 atomic regions from SNP 106227 to 106827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,965 DEBUG Processing 523/651 atomic regions from SNP 156720 to 157320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,993 DEBUG Processing 356/553 atomic regions from SNP 106527 to 107127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,008 DEBUG Processing 2/525 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,025 DEBUG Processing 452/589 atomic regions from SNP 135322 to 135922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,184 DEBUG Processing 357/553 atomic regions from SNP 106827 to 107427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,188 DEBUG Processing 524/651 atomic regions from SNP 157020 to 157620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,213 DEBUG Processing 3/525 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,262 DEBUG Processing 453/589 atomic regions from SNP 135622 to 136222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,383 DEBUG Processing 358/553 atomic regions from SNP 107127 to 107727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,412 DEBUG Processing 525/651 atomic regions from SNP 157320 to 157920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,413 DEBUG Processing 4/525 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,520 DEBUG Processing 454/589 atomic regions from SNP 135922 to 136522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,583 DEBUG Processing 359/553 atomic regions from SNP 107427 to 108027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,623 DEBUG Processing 5/525 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,662 DEBUG Processing 526/651 atomic regions from SNP 157620 to 158220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,760 DEBUG Processing 455/589 atomic regions from SNP 136222 to 136822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,775 DEBUG Processing 360/553 atomic regions from SNP 107727 to 108327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,824 DEBUG Processing 6/525 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,907 DEBUG Processing 527/651 atomic regions from SNP 157920 to 158520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,970 DEBUG Processing 361/553 atomic regions from SNP 108027 to 108627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,013 DEBUG Processing 456/589 atomic regions from SNP 136522 to 137122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,027 DEBUG Processing 7/525 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,126 DEBUG Processing 528/651 atomic regions from SNP 158220 to 158820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,163 DEBUG Processing 362/553 atomic regions from SNP 108327 to 108927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,223 DEBUG Processing 8/525 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,263 DEBUG Processing 457/589 atomic regions from SNP 136822 to 137422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,341 DEBUG Processing 529/651 atomic regions from SNP 158520 to 159120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,355 DEBUG Processing 363/553 atomic regions from SNP 108627 to 109227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,420 DEBUG Processing 9/525 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,510 DEBUG Processing 458/589 atomic regions from SNP 137122 to 137722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,545 DEBUG Processing 364/553 atomic regions from SNP 108927 to 109527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,584 DEBUG Processing 530/651 atomic regions from SNP 158820 to 159420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,613 DEBUG Processing 10/525 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,738 DEBUG Processing 365/553 atomic regions from SNP 109227 to 109827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,757 DEBUG Processing 459/589 atomic regions from SNP 137422 to 138022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,811 DEBUG Processing 11/525 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,830 DEBUG Processing 531/651 atomic regions from SNP 159120 to 159720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,927 DEBUG Processing 366/553 atomic regions from SNP 109527 to 110127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,999 DEBUG Processing 460/589 atomic regions from SNP 137722 to 138322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,009 DEBUG Processing 12/525 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,051 DEBUG Processing 532/651 atomic regions from SNP 159420 to 160020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,115 DEBUG Processing 367/553 atomic regions from SNP 109827 to 110427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,221 DEBUG Processing 461/589 atomic regions from SNP 138022 to 138622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,222 DEBUG Processing 13/525 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,274 DEBUG Processing 533/651 atomic regions from SNP 159720 to 160320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,306 DEBUG Processing 368/553 atomic regions from SNP 110127 to 110727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,419 DEBUG Processing 14/525 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,439 DEBUG Processing 462/589 atomic regions from SNP 138322 to 138922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,498 DEBUG Processing 369/553 atomic regions from SNP 110427 to 111027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,498 DEBUG Processing 534/651 atomic regions from SNP 160020 to 160620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,617 DEBUG Processing 15/525 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,662 DEBUG Processing 463/589 atomic regions from SNP 138622 to 139222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,687 DEBUG Processing 370/553 atomic regions from SNP 110727 to 111327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,740 DEBUG Processing 535/651 atomic regions from SNP 160320 to 160920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,822 DEBUG Processing 16/525 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,875 DEBUG Processing 371/553 atomic regions from SNP 111027 to 111627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,899 DEBUG Processing 464/589 atomic regions from SNP 138922 to 139522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,984 DEBUG Processing 536/651 atomic regions from SNP 160620 to 161220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,011 DEBUG Processing 17/525 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,061 DEBUG Processing 372/553 atomic regions from SNP 111327 to 111927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,132 DEBUG Processing 465/589 atomic regions from SNP 139222 to 139822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,209 DEBUG Processing 537/651 atomic regions from SNP 160920 to 161520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,222 DEBUG Processing 18/525 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,251 DEBUG Processing 373/553 atomic regions from SNP 111627 to 112227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,368 DEBUG Processing 466/589 atomic regions from SNP 139522 to 140122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,428 DEBUG Processing 19/525 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,434 DEBUG Processing 538/651 atomic regions from SNP 161220 to 161820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,442 DEBUG Processing 374/553 atomic regions from SNP 111927 to 112527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,614 DEBUG Processing 467/589 atomic regions from SNP 139822 to 140422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,630 DEBUG Processing 20/525 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,634 DEBUG Processing 375/553 atomic regions from SNP 112227 to 112827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,682 DEBUG Processing 539/651 atomic regions from SNP 161520 to 162120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,827 DEBUG Processing 376/553 atomic regions from SNP 112527 to 113127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,833 DEBUG Processing 468/589 atomic regions from SNP 140122 to 140722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,848 DEBUG Processing 21/525 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,915 DEBUG Processing 540/651 atomic regions from SNP 161820 to 162420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,018 DEBUG Processing 377/553 atomic regions from SNP 112827 to 113427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,050 DEBUG Processing 469/589 atomic regions from SNP 140422 to 141022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,071 DEBUG Processing 22/525 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,156 DEBUG Processing 541/651 atomic regions from SNP 162120 to 162720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,213 DEBUG Processing 378/553 atomic regions from SNP 113127 to 113727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,270 DEBUG Processing 470/589 atomic regions from SNP 140722 to 141322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,271 DEBUG Processing 23/525 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,394 DEBUG Processing 542/651 atomic regions from SNP 162420 to 163020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,419 DEBUG Processing 379/553 atomic regions from SNP 113427 to 114027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,471 DEBUG Processing 24/525 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,500 DEBUG Processing 471/589 atomic regions from SNP 141022 to 141622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,615 DEBUG Processing 380/553 atomic regions from SNP 113727 to 114327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,621 DEBUG Processing 543/651 atomic regions from SNP 162720 to 163320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,673 DEBUG Processing 25/525 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,736 DEBUG Processing 472/589 atomic regions from SNP 141322 to 141922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,810 DEBUG Processing 381/553 atomic regions from SNP 114027 to 114627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,845 DEBUG Processing 544/651 atomic regions from SNP 163020 to 163620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,875 DEBUG Processing 26/525 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,966 DEBUG Processing 473/589 atomic regions from SNP 141622 to 142222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,003 DEBUG Processing 382/553 atomic regions from SNP 114327 to 114927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,070 DEBUG Processing 545/651 atomic regions from SNP 163320 to 163920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,077 DEBUG Processing 27/525 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,198 DEBUG Processing 383/553 atomic regions from SNP 114627 to 115227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,205 DEBUG Processing 474/589 atomic regions from SNP 141922 to 142522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,280 DEBUG Processing 28/525 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,297 DEBUG Processing 546/651 atomic regions from SNP 163620 to 164220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,391 DEBUG Processing 384/553 atomic regions from SNP 114927 to 115527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,439 DEBUG Processing 475/589 atomic regions from SNP 142222 to 142822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,484 DEBUG Processing 29/525 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,523 DEBUG Processing 547/651 atomic regions from SNP 163920 to 164520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,583 DEBUG Processing 385/553 atomic regions from SNP 115227 to 115827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,657 DEBUG Processing 476/589 atomic regions from SNP 142522 to 143122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,692 DEBUG Processing 30/525 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,749 DEBUG Processing 548/651 atomic regions from SNP 164220 to 164820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,776 DEBUG Processing 386/553 atomic regions from SNP 115527 to 116127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,878 DEBUG Processing 477/589 atomic regions from SNP 142822 to 143422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,898 DEBUG Processing 31/525 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,970 DEBUG Processing 387/553 atomic regions from SNP 115827 to 116427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,996 DEBUG Processing 549/651 atomic regions from SNP 164520 to 165120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,101 DEBUG Processing 478/589 atomic regions from SNP 143122 to 143722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,104 DEBUG Processing 32/525 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,166 DEBUG Processing 388/553 atomic regions from SNP 116127 to 116727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,226 DEBUG Processing 550/651 atomic regions from SNP 164820 to 165420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,306 DEBUG Processing 33/525 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,329 DEBUG Processing 479/589 atomic regions from SNP 143422 to 144022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,359 DEBUG Processing 389/553 atomic regions from SNP 116427 to 117027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,472 DEBUG Processing 551/651 atomic regions from SNP 165120 to 165720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,514 DEBUG Processing 34/525 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,553 DEBUG Processing 390/553 atomic regions from SNP 116727 to 117327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,578 DEBUG Processing 480/589 atomic regions from SNP 143722 to 144322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,706 DEBUG Processing 552/651 atomic regions from SNP 165420 to 166020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,722 DEBUG Processing 35/525 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,747 DEBUG Processing 391/553 atomic regions from SNP 117027 to 117627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,812 DEBUG Processing 481/589 atomic regions from SNP 144022 to 144622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,924 DEBUG Processing 36/525 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,933 DEBUG Processing 553/651 atomic regions from SNP 165720 to 166320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,938 DEBUG Processing 392/553 atomic regions from SNP 117327 to 117927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,031 DEBUG Processing 482/589 atomic regions from SNP 144322 to 144922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,124 DEBUG Processing 37/525 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,129 DEBUG Processing 393/553 atomic regions from SNP 117627 to 118227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,151 DEBUG Processing 554/651 atomic regions from SNP 166020 to 166620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,247 DEBUG Processing 483/589 atomic regions from SNP 144622 to 145222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,319 DEBUG Processing 394/553 atomic regions from SNP 117927 to 118527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,325 DEBUG Processing 38/525 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,401 DEBUG Processing 555/651 atomic regions from SNP 166320 to 166920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,469 DEBUG Processing 484/589 atomic regions from SNP 144922 to 145522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,510 DEBUG Processing 395/553 atomic regions from SNP 118227 to 118827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,532 DEBUG Processing 39/525 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,626 DEBUG Processing 556/651 atomic regions from SNP 166620 to 167220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,697 DEBUG Processing 485/589 atomic regions from SNP 145222 to 145822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,702 DEBUG Processing 396/553 atomic regions from SNP 118527 to 119127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,744 DEBUG Processing 40/525 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,848 DEBUG Processing 557/651 atomic regions from SNP 166920 to 167520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,890 DEBUG Processing 397/553 atomic regions from SNP 118827 to 119427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,927 DEBUG Processing 486/589 atomic regions from SNP 145522 to 146122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,955 DEBUG Processing 41/525 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,076 DEBUG Processing 558/651 atomic regions from SNP 167220 to 167820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,078 DEBUG Processing 398/553 atomic regions from SNP 119127 to 119727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,156 DEBUG Processing 487/589 atomic regions from SNP 145822 to 146422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,166 DEBUG Processing 42/525 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,264 DEBUG Processing 399/553 atomic regions from SNP 119427 to 120027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,313 DEBUG Processing 559/651 atomic regions from SNP 167520 to 168120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,381 DEBUG Processing 43/525 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,395 DEBUG Processing 488/589 atomic regions from SNP 146122 to 146722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,454 DEBUG Processing 400/553 atomic regions from SNP 119727 to 120327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,540 DEBUG Processing 560/651 atomic regions from SNP 167820 to 168420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,593 DEBUG Processing 44/525 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,626 DEBUG Processing 489/589 atomic regions from SNP 146422 to 147022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,647 DEBUG Processing 401/553 atomic regions from SNP 120027 to 120627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,769 DEBUG Processing 561/651 atomic regions from SNP 168120 to 168720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,804 DEBUG Processing 45/525 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,840 DEBUG Processing 402/553 atomic regions from SNP 120327 to 120927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,853 DEBUG Processing 490/589 atomic regions from SNP 146722 to 147322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,004 DEBUG Processing 562/651 atomic regions from SNP 168420 to 169020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,011 DEBUG Processing 46/525 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,037 DEBUG Processing 403/553 atomic regions from SNP 120627 to 121227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,082 DEBUG Processing 491/589 atomic regions from SNP 147022 to 147622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,223 DEBUG Processing 47/525 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,241 DEBUG Processing 563/651 atomic regions from SNP 168720 to 169320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,241 DEBUG Processing 404/553 atomic regions from SNP 120927 to 121527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,312 DEBUG Processing 492/589 atomic regions from SNP 147322 to 147922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,424 DEBUG Processing 48/525 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,437 DEBUG Processing 405/553 atomic regions from SNP 121227 to 121827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,495 DEBUG Processing 564/651 atomic regions from SNP 169020 to 169620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,538 DEBUG Processing 493/589 atomic regions from SNP 147622 to 148222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,622 DEBUG Processing 49/525 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,630 DEBUG Processing 406/553 atomic regions from SNP 121527 to 122127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,746 DEBUG Processing 565/651 atomic regions from SNP 169320 to 169920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,762 DEBUG Processing 494/589 atomic regions from SNP 147922 to 148522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,822 DEBUG Processing 50/525 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,824 DEBUG Processing 407/553 atomic regions from SNP 121827 to 122427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,969 DEBUG Processing 566/651 atomic regions from SNP 169620 to 170220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,993 DEBUG Processing 495/589 atomic regions from SNP 148222 to 148822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,026 DEBUG Processing 408/553 atomic regions from SNP 122127 to 122727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,028 DEBUG Processing 51/525 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,200 DEBUG Processing 567/651 atomic regions from SNP 169920 to 170520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,225 DEBUG Processing 496/589 atomic regions from SNP 148522 to 149122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,227 DEBUG Processing 409/553 atomic regions from SNP 122427 to 123027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,237 DEBUG Processing 52/525 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,426 DEBUG Processing 410/553 atomic regions from SNP 122727 to 123327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,450 DEBUG Processing 568/651 atomic regions from SNP 170220 to 170820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,450 DEBUG Processing 53/525 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,454 DEBUG Processing 497/589 atomic regions from SNP 148822 to 149422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,456 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:57:08,623 DEBUG Processing 411/553 atomic regions from SNP 123027 to 123627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,663 DEBUG Processing 54/525 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,689 DEBUG Processing 498/589 atomic regions from SNP 149122 to 149722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,700 DEBUG Processing 569/651 atomic regions from SNP 170520 to 171120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,818 DEBUG Processing 412/553 atomic regions from SNP 123327 to 123927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,865 DEBUG Processing 55/525 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,929 DEBUG Processing 499/589 atomic regions from SNP 149422 to 150022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,946 DEBUG Processing 570/651 atomic regions from SNP 170820 to 171420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,012 DEBUG Processing 413/553 atomic regions from SNP 123627 to 124227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,073 DEBUG Processing 56/525 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,180 DEBUG Processing 500/589 atomic regions from SNP 149722 to 150322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,184 DEBUG Processing 571/651 atomic regions from SNP 171120 to 171720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,208 DEBUG Processing 414/553 atomic regions from SNP 123927 to 124527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,272 DEBUG Processing 57/525 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,409 DEBUG Processing 415/553 atomic regions from SNP 124227 to 124827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,420 DEBUG Processing 501/589 atomic regions from SNP 150022 to 150622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,421 DEBUG Processing 572/651 atomic regions from SNP 171420 to 172020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,473 DEBUG Processing 58/525 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,607 DEBUG Processing 416/553 atomic regions from SNP 124527 to 125127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,655 DEBUG Processing 573/651 atomic regions from SNP 171720 to 172320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,682 DEBUG Processing 502/589 atomic regions from SNP 150322 to 150922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,685 DEBUG Processing 59/525 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,804 DEBUG Processing 417/553 atomic regions from SNP 124827 to 125427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,886 DEBUG Processing 574/651 atomic regions from SNP 172020 to 172620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,899 DEBUG Processing 60/525 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,938 DEBUG Processing 503/589 atomic regions from SNP 150622 to 151222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,000 DEBUG Processing 418/553 atomic regions from SNP 125127 to 125727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,111 DEBUG Processing 61/525 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,116 DEBUG Processing 575/651 atomic regions from SNP 172320 to 172920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,173 DEBUG Processing 504/589 atomic regions from SNP 150922 to 151522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,197 DEBUG Processing 419/553 atomic regions from SNP 125427 to 126027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,316 DEBUG Processing 62/525 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,354 DEBUG Processing 576/651 atomic regions from SNP 172620 to 173220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,406 DEBUG Processing 420/553 atomic regions from SNP 125727 to 126327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,416 DEBUG Processing 505/589 atomic regions from SNP 151222 to 151822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,522 DEBUG Processing 63/525 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,583 DEBUG Processing 577/651 atomic regions from SNP 172920 to 173520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,602 DEBUG Processing 421/553 atomic regions from SNP 126027 to 126627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,644 DEBUG Processing 506/589 atomic regions from SNP 151522 to 152122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,724 DEBUG Processing 64/525 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,802 DEBUG Processing 422/553 atomic regions from SNP 126327 to 126927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,816 DEBUG Processing 578/651 atomic regions from SNP 173220 to 173820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,871 DEBUG Processing 507/589 atomic regions from SNP 151822 to 152422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,934 DEBUG Processing 65/525 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,003 DEBUG Processing 423/553 atomic regions from SNP 126627 to 127227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,047 DEBUG Processing 579/651 atomic regions from SNP 173520 to 174120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,095 DEBUG Processing 508/589 atomic regions from SNP 152122 to 152722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,137 DEBUG Processing 66/525 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,205 DEBUG Processing 424/553 atomic regions from SNP 126927 to 127527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,275 DEBUG Processing 580/651 atomic regions from SNP 173820 to 174420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,321 DEBUG Processing 509/589 atomic regions from SNP 152422 to 153022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,340 DEBUG Processing 67/525 atomic regions from SNP 19866 to 20466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,401 DEBUG Processing 425/553 atomic regions from SNP 127227 to 127827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,503 DEBUG Processing 581/651 atomic regions from SNP 174120 to 174720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,544 DEBUG Processing 68/525 atomic regions from SNP 20166 to 20766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,546 DEBUG Processing 510/589 atomic regions from SNP 152722 to 153322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,592 DEBUG Processing 426/553 atomic regions from SNP 127527 to 128127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,731 DEBUG Processing 582/651 atomic regions from SNP 174420 to 175020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,751 DEBUG Processing 69/525 atomic regions from SNP 20466 to 21066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,773 DEBUG Processing 511/589 atomic regions from SNP 153022 to 153622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,784 DEBUG Processing 427/553 atomic regions from SNP 127827 to 128427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,954 DEBUG Processing 70/525 atomic regions from SNP 20766 to 21366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,961 DEBUG Processing 583/651 atomic regions from SNP 174720 to 175320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,975 DEBUG Processing 428/553 atomic regions from SNP 128127 to 128727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,995 DEBUG Processing 512/589 atomic regions from SNP 153322 to 153922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,167 DEBUG Processing 71/525 atomic regions from SNP 21066 to 21666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,192 DEBUG Processing 429/553 atomic regions from SNP 128427 to 129027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,195 DEBUG Processing 584/651 atomic regions from SNP 175020 to 175620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,230 DEBUG Processing 513/589 atomic regions from SNP 153622 to 154222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,379 DEBUG Processing 72/525 atomic regions from SNP 21366 to 21966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,410 DEBUG Processing 430/553 atomic regions from SNP 128727 to 129327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,427 DEBUG Processing 585/651 atomic regions from SNP 175320 to 175920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,458 DEBUG Processing 514/589 atomic regions from SNP 153922 to 154522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,578 DEBUG Processing 73/525 atomic regions from SNP 21666 to 22266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,602 DEBUG Processing 431/553 atomic regions from SNP 129027 to 129627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,664 DEBUG Processing 586/651 atomic regions from SNP 175620 to 176220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,681 DEBUG Processing 515/589 atomic regions from SNP 154222 to 154822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,778 DEBUG Processing 74/525 atomic regions from SNP 21966 to 22566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,791 DEBUG Processing 432/553 atomic regions from SNP 129327 to 129927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,886 DEBUG Processing 587/651 atomic regions from SNP 175920 to 176520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,898 DEBUG Processing 516/589 atomic regions from SNP 154522 to 155122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,979 DEBUG Processing 75/525 atomic regions from SNP 22266 to 22866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,986 DEBUG Processing 433/553 atomic regions from SNP 129627 to 130227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,116 DEBUG Processing 517/589 atomic regions from SNP 154822 to 155422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,127 DEBUG Processing 588/651 atomic regions from SNP 176220 to 176820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,179 DEBUG Processing 434/553 atomic regions from SNP 129927 to 130527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,185 DEBUG Processing 76/525 atomic regions from SNP 22566 to 23166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,339 DEBUG Processing 518/589 atomic regions from SNP 155122 to 155722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,350 DEBUG Processing 589/651 atomic regions from SNP 176520 to 177120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,370 DEBUG Processing 435/553 atomic regions from SNP 130227 to 130827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,389 DEBUG Processing 77/525 atomic regions from SNP 22866 to 23466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,568 DEBUG Processing 436/553 atomic regions from SNP 130527 to 131127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,576 DEBUG Processing 519/589 atomic regions from SNP 155422 to 156022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,591 DEBUG Processing 590/651 atomic regions from SNP 176820 to 177420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,606 DEBUG Processing 78/525 atomic regions from SNP 23166 to 23766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,758 DEBUG Processing 437/553 atomic regions from SNP 130827 to 131427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,808 DEBUG Processing 520/589 atomic regions from SNP 155722 to 156322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,815 DEBUG Processing 79/525 atomic regions from SNP 23466 to 24066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,825 DEBUG Processing 591/651 atomic regions from SNP 177120 to 177720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,948 DEBUG Processing 438/553 atomic regions from SNP 131127 to 131727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,026 DEBUG Processing 80/525 atomic regions from SNP 23766 to 24366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,040 DEBUG Processing 521/589 atomic regions from SNP 156022 to 156622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,062 DEBUG Processing 592/651 atomic regions from SNP 177420 to 178020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,140 DEBUG Processing 439/553 atomic regions from SNP 131427 to 132027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,235 DEBUG Processing 81/525 atomic regions from SNP 24066 to 24666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,271 DEBUG Processing 522/589 atomic regions from SNP 156322 to 156922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,296 DEBUG Processing 593/651 atomic regions from SNP 177720 to 178320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,331 DEBUG Processing 440/553 atomic regions from SNP 131727 to 132327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,452 DEBUG Processing 82/525 atomic regions from SNP 24366 to 24966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,500 DEBUG Processing 523/589 atomic regions from SNP 156622 to 157222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,524 DEBUG Processing 594/651 atomic regions from SNP 178020 to 178620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,526 DEBUG Processing 441/553 atomic regions from SNP 132027 to 132627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,652 DEBUG Processing 83/525 atomic regions from SNP 24666 to 25266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,720 DEBUG Processing 442/553 atomic regions from SNP 132327 to 132927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,726 DEBUG Processing 524/589 atomic regions from SNP 156922 to 157522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,753 DEBUG Processing 595/651 atomic regions from SNP 178320 to 178920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,849 DEBUG Processing 84/525 atomic regions from SNP 24966 to 25566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,913 DEBUG Processing 443/553 atomic regions from SNP 132627 to 133227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,958 DEBUG Processing 525/589 atomic regions from SNP 157222 to 157822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,987 DEBUG Processing 596/651 atomic regions from SNP 178620 to 179220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,053 DEBUG Processing 85/525 atomic regions from SNP 25266 to 25866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,104 DEBUG Processing 444/553 atomic regions from SNP 132927 to 133527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,197 DEBUG Processing 526/589 atomic regions from SNP 157522 to 158122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,218 DEBUG Processing 597/651 atomic regions from SNP 178920 to 179520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,257 DEBUG Processing 86/525 atomic regions from SNP 25566 to 26166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,291 DEBUG Processing 445/553 atomic regions from SNP 133227 to 133827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,426 DEBUG Processing 527/589 atomic regions from SNP 157822 to 158422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,464 DEBUG Processing 87/525 atomic regions from SNP 25866 to 26466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,475 DEBUG Processing 598/651 atomic regions from SNP 179220 to 179820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,482 DEBUG Processing 446/553 atomic regions from SNP 133527 to 134127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,647 DEBUG Processing 528/589 atomic regions from SNP 158122 to 158722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,669 DEBUG Processing 88/525 atomic regions from SNP 26166 to 26766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,676 DEBUG Processing 447/553 atomic regions from SNP 133827 to 134427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,737 DEBUG Processing 599/651 atomic regions from SNP 179520 to 180120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,873 DEBUG Processing 529/589 atomic regions from SNP 158422 to 159022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,873 DEBUG Processing 448/553 atomic regions from SNP 134127 to 134727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,874 DEBUG Processing 89/525 atomic regions from SNP 26466 to 27066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,002 DEBUG Processing 600/651 atomic regions from SNP 179820 to 180420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,070 DEBUG Processing 449/553 atomic regions from SNP 134427 to 135027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,080 DEBUG Processing 90/525 atomic regions from SNP 26766 to 27366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,105 DEBUG Processing 530/589 atomic regions from SNP 158722 to 159322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,262 DEBUG Processing 601/651 atomic regions from SNP 180120 to 180720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,263 DEBUG Processing 450/553 atomic regions from SNP 134727 to 135327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,282 DEBUG Processing 91/525 atomic regions from SNP 27066 to 27666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,325 DEBUG Processing 531/589 atomic regions from SNP 159022 to 159622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,452 DEBUG Processing 451/553 atomic regions from SNP 135027 to 135627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,478 DEBUG Processing 92/525 atomic regions from SNP 27366 to 27966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,512 DEBUG Processing 602/651 atomic regions from SNP 180420 to 181020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,544 DEBUG Processing 532/589 atomic regions from SNP 159322 to 159922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,642 DEBUG Processing 452/553 atomic regions from SNP 135327 to 135927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,659 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:57:16,661 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:57:16,674 DEBUG Processing 93/525 atomic regions from SNP 27666 to 28266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,738 DEBUG Processing 603/651 atomic regions from SNP 180720 to 181320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,764 DEBUG Processing 533/589 atomic regions from SNP 159622 to 160222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,831 DEBUG Processing 453/553 atomic regions from SNP 135627 to 136227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,869 DEBUG Processing 94/525 atomic regions from SNP 27966 to 28566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,989 DEBUG Processing 534/589 atomic regions from SNP 159922 to 160522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,992 DEBUG Processing 604/651 atomic regions from SNP 181020 to 181620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,022 DEBUG Processing 454/553 atomic regions from SNP 135927 to 136527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,067 DEBUG Processing 95/525 atomic regions from SNP 28266 to 28866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,216 DEBUG Processing 535/589 atomic regions from SNP 160222 to 160822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,220 DEBUG Processing 455/553 atomic regions from SNP 136227 to 136827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,251 DEBUG Processing 605/651 atomic regions from SNP 181320 to 181920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,265 DEBUG Processing 96/525 atomic regions from SNP 28566 to 29166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,411 DEBUG Processing 456/553 atomic regions from SNP 136527 to 137127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,441 DEBUG Processing 536/589 atomic regions from SNP 160522 to 161122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,474 DEBUG Processing 97/525 atomic regions from SNP 28866 to 29466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,508 DEBUG Processing 606/651 atomic regions from SNP 181620 to 182220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,606 DEBUG Processing 457/553 atomic regions from SNP 136827 to 137427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,674 DEBUG Processing 537/589 atomic regions from SNP 160822 to 161422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,686 DEBUG Processing 98/525 atomic regions from SNP 29166 to 29766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,769 DEBUG Processing 607/651 atomic regions from SNP 181920 to 182520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,797 DEBUG Processing 458/553 atomic regions from SNP 137127 to 137727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,890 DEBUG Processing 99/525 atomic regions from SNP 29466 to 30066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,901 DEBUG Processing 538/589 atomic regions from SNP 161122 to 161722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,982 DEBUG Processing 459/553 atomic regions from SNP 137427 to 138027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,003 DEBUG Processing 608/651 atomic regions from SNP 182220 to 182820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,087 DEBUG Processing 100/525 atomic regions from SNP 29766 to 30366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,123 DEBUG Processing 539/589 atomic regions from SNP 161422 to 162022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,166 DEBUG Processing 460/553 atomic regions from SNP 137727 to 138327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,234 DEBUG Processing 609/651 atomic regions from SNP 182520 to 183120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,280 DEBUG Processing 101/525 atomic regions from SNP 30066 to 30666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,344 DEBUG chrY total SNP count: 128 2025-01-31 09:57:18,344 DEBUG chrY length: 91744698 2025-01-31 09:57:18,344 DEBUG ----------------------------------------- 2025-01-31 09:57:18,344 INFO Processing SNPs in chrY 2025-01-31 09:57:18,345 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 11), (11, 19), (19, 30), (30, 66), (66, 72), (72, 80), (80, 82), (82, 85), (85, 86), (86, 128)] 2025-01-31 09:57:18,346 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [11, 8, 11, 36, 6, 8, 2, 3, 1, 42] SNP IDs counts: [11, 8, 11, 36, 6, 8, 2, 3, 1, 42] Critical gap: 16113bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.86Mbp], 0.87Mbp[3.06Mbp], 3.93Mbp[0.02Mbp], 3.97Mbp[0.03Mbp], 4.02Mbp[0.13Mbp], 4.15Mbp[6.55Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[17.31Mbp], 40.03Mbp[3.89Mbp], 43.92Mbp[46.79Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:57:18,346 DEBUG chrY time: 0.0015203766524791718 s 2025-01-31 09:57:18,352 DEBUG Processing 461/553 atomic regions from SNP 138027 to 138627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,353 DEBUG Processing 540/589 atomic regions from SNP 161722 to 162322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,464 DEBUG Processing 610/651 atomic regions from SNP 182820 to 183420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,477 DEBUG Processing 102/525 atomic regions from SNP 30366 to 30966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,550 DEBUG Processing 462/553 atomic regions from SNP 138327 to 138927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,586 DEBUG Processing 541/589 atomic regions from SNP 162022 to 162622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,680 DEBUG Processing 103/525 atomic regions from SNP 30666 to 31266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,713 DEBUG Processing 611/651 atomic regions from SNP 183120 to 183720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,735 DEBUG Processing 463/553 atomic regions from SNP 138627 to 139227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,805 DEBUG Processing 542/589 atomic regions from SNP 162322 to 162922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,880 DEBUG Processing 104/525 atomic regions from SNP 30966 to 31566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,922 DEBUG Processing 464/553 atomic regions from SNP 138927 to 139527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,971 DEBUG Processing 612/651 atomic regions from SNP 183420 to 184020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,025 DEBUG Processing 543/589 atomic regions from SNP 162622 to 163222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,078 DEBUG Processing 105/525 atomic regions from SNP 31266 to 31866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,117 DEBUG Processing 465/553 atomic regions from SNP 139227 to 139827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,230 DEBUG Processing 613/651 atomic regions from SNP 183720 to 184320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,249 DEBUG Processing 544/589 atomic regions from SNP 162922 to 163522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,278 DEBUG Processing 106/525 atomic regions from SNP 31566 to 32166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,306 DEBUG Processing 466/553 atomic regions from SNP 139527 to 140127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,483 DEBUG Processing 545/589 atomic regions from SNP 163222 to 163822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,489 DEBUG Processing 614/651 atomic regions from SNP 184020 to 184620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,491 DEBUG Processing 107/525 atomic regions from SNP 31866 to 32466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,502 DEBUG Processing 467/553 atomic regions from SNP 139827 to 140427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,691 DEBUG Processing 468/553 atomic regions from SNP 140127 to 140727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,713 DEBUG Processing 546/589 atomic regions from SNP 163522 to 164122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,726 DEBUG Processing 108/525 atomic regions from SNP 32166 to 32766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,751 DEBUG Processing 615/651 atomic regions from SNP 184320 to 184920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,876 DEBUG Processing 469/553 atomic regions from SNP 140427 to 141027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,939 DEBUG Processing 547/589 atomic regions from SNP 163822 to 164422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,954 DEBUG Processing 109/525 atomic regions from SNP 32466 to 33066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,991 DEBUG Processing 616/651 atomic regions from SNP 184620 to 185220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,060 DEBUG Processing 470/553 atomic regions from SNP 140727 to 141327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,164 DEBUG Processing 548/589 atomic regions from SNP 164122 to 164722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,172 DEBUG Processing 110/525 atomic regions from SNP 32766 to 33366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,220 DEBUG Processing 617/651 atomic regions from SNP 184920 to 185520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,246 DEBUG Processing 471/553 atomic regions from SNP 141027 to 141627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,383 DEBUG Processing 549/589 atomic regions from SNP 164422 to 165022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,390 DEBUG Processing 111/525 atomic regions from SNP 33066 to 33666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,434 DEBUG Processing 472/553 atomic regions from SNP 141327 to 141927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,448 DEBUG Processing 618/651 atomic regions from SNP 185220 to 185820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,604 DEBUG Processing 550/589 atomic regions from SNP 164722 to 165322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,619 DEBUG Processing 473/553 atomic regions from SNP 141627 to 142227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,622 DEBUG Processing 112/525 atomic regions from SNP 33366 to 33966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,673 DEBUG Processing 619/651 atomic regions from SNP 185520 to 186120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,771 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:57:20,801 DEBUG Processing 474/553 atomic regions from SNP 141927 to 142527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,819 DEBUG Processing 551/589 atomic regions from SNP 165022 to 165622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,848 DEBUG Processing 113/525 atomic regions from SNP 33666 to 34266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,904 DEBUG Processing 620/651 atomic regions from SNP 185820 to 186420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,987 DEBUG Processing 475/553 atomic regions from SNP 142227 to 142827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,038 DEBUG Processing 552/589 atomic regions from SNP 165322 to 165922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,085 DEBUG Processing 114/525 atomic regions from SNP 33966 to 34566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,132 DEBUG Processing 621/651 atomic regions from SNP 186120 to 186720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,173 DEBUG Processing 476/553 atomic regions from SNP 142527 to 143127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,255 DEBUG Processing 553/589 atomic regions from SNP 165622 to 166222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,318 DEBUG Processing 115/525 atomic regions from SNP 34266 to 34866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,357 DEBUG Processing 622/651 atomic regions from SNP 186420 to 187020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,359 DEBUG Processing 477/553 atomic regions from SNP 142827 to 143427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,478 DEBUG Processing 554/589 atomic regions from SNP 165922 to 166522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,549 DEBUG Processing 478/553 atomic regions from SNP 143127 to 143727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,551 DEBUG Processing 116/525 atomic regions from SNP 34566 to 35166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,589 DEBUG Processing 623/651 atomic regions from SNP 186720 to 187320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,710 DEBUG Processing 555/589 atomic regions from SNP 166222 to 166822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,738 DEBUG Processing 479/553 atomic regions from SNP 143427 to 144027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,780 DEBUG Processing 117/525 atomic regions from SNP 34866 to 35466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,810 DEBUG Processing 624/651 atomic regions from SNP 187020 to 187620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,929 DEBUG Processing 480/553 atomic regions from SNP 143727 to 144327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,931 DEBUG Processing 556/589 atomic regions from SNP 166522 to 167122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,010 DEBUG Processing 118/525 atomic regions from SNP 35166 to 35766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,029 DEBUG Processing 625/651 atomic regions from SNP 187320 to 187920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,119 DEBUG Processing 481/553 atomic regions from SNP 144027 to 144627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,152 DEBUG Processing 557/589 atomic regions from SNP 166822 to 167422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,226 DEBUG Processing 119/525 atomic regions from SNP 35466 to 36066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,251 DEBUG Processing 626/651 atomic regions from SNP 187620 to 188220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,310 DEBUG Processing 482/553 atomic regions from SNP 144327 to 144927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,393 DEBUG Processing 558/589 atomic regions from SNP 167122 to 167722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,443 DEBUG Processing 120/525 atomic regions from SNP 35766 to 36366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,481 DEBUG Processing 627/651 atomic regions from SNP 187920 to 188520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,511 DEBUG Processing 483/553 atomic regions from SNP 144627 to 145227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,647 DEBUG Processing 559/589 atomic regions from SNP 167422 to 168022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,677 DEBUG Processing 121/525 atomic regions from SNP 36066 to 36666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,707 DEBUG Processing 484/553 atomic regions from SNP 144927 to 145527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,714 DEBUG Processing 628/651 atomic regions from SNP 188220 to 188820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,903 DEBUG Processing 485/553 atomic regions from SNP 145227 to 145827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,909 DEBUG Processing 560/589 atomic regions from SNP 167722 to 168322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,915 DEBUG Processing 122/525 atomic regions from SNP 36366 to 36966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,942 DEBUG Processing 629/651 atomic regions from SNP 188520 to 189120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,096 DEBUG Processing 486/553 atomic regions from SNP 145527 to 146127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,151 DEBUG Processing 123/525 atomic regions from SNP 36666 to 37266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,171 DEBUG Processing 561/589 atomic regions from SNP 168022 to 168622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,171 DEBUG Processing 630/651 atomic regions from SNP 188820 to 189420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,289 DEBUG Processing 487/553 atomic regions from SNP 145827 to 146427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,386 DEBUG Processing 124/525 atomic regions from SNP 36966 to 37566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,408 DEBUG Processing 631/651 atomic regions from SNP 189120 to 189720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,431 DEBUG Processing 562/589 atomic regions from SNP 168322 to 168922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,482 DEBUG Processing 488/553 atomic regions from SNP 146127 to 146727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,617 DEBUG Processing 125/525 atomic regions from SNP 37266 to 37866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,642 DEBUG Processing 632/651 atomic regions from SNP 189420 to 190020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,686 DEBUG Processing 563/589 atomic regions from SNP 168622 to 169222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,697 DEBUG Processing 489/553 atomic regions from SNP 146427 to 147027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,833 DEBUG Processing 126/525 atomic regions from SNP 37566 to 38166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,874 DEBUG Processing 633/651 atomic regions from SNP 189720 to 190320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,909 DEBUG Processing 490/553 atomic regions from SNP 146727 to 147327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,944 DEBUG Processing 564/589 atomic regions from SNP 168922 to 169522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,051 DEBUG Processing 127/525 atomic regions from SNP 37866 to 38466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,104 DEBUG Processing 634/651 atomic regions from SNP 190020 to 190620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,127 DEBUG Processing 491/553 atomic regions from SNP 147027 to 147627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,198 DEBUG Processing 565/589 atomic regions from SNP 169222 to 169822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,278 DEBUG Processing 128/525 atomic regions from SNP 38166 to 38766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,321 DEBUG Processing 492/553 atomic regions from SNP 147327 to 147927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,330 DEBUG Processing 635/651 atomic regions from SNP 190320 to 190920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,439 DEBUG Processing 566/589 atomic regions from SNP 169522 to 170122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,512 DEBUG Processing 129/525 atomic regions from SNP 38466 to 39066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,518 DEBUG Processing 493/553 atomic regions from SNP 147627 to 148227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,562 DEBUG Processing 636/651 atomic regions from SNP 190620 to 191220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,673 DEBUG Processing 567/589 atomic regions from SNP 169822 to 170422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,707 DEBUG Processing 494/553 atomic regions from SNP 147927 to 148527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,741 DEBUG Processing 130/525 atomic regions from SNP 38766 to 39366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,794 DEBUG Processing 637/651 atomic regions from SNP 190920 to 191520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,890 DEBUG Processing 568/589 atomic regions from SNP 170122 to 170722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,891 DEBUG Processing 495/553 atomic regions from SNP 148227 to 148827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,963 DEBUG Processing 131/525 atomic regions from SNP 39066 to 39666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,012 DEBUG Processing 638/651 atomic regions from SNP 191220 to 191820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,074 DEBUG Processing 496/553 atomic regions from SNP 148527 to 149127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,123 DEBUG Processing 569/589 atomic regions from SNP 170422 to 171022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,165 DEBUG Processing 132/525 atomic regions from SNP 39366 to 39966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,231 DEBUG Processing 639/651 atomic regions from SNP 191520 to 192120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,259 DEBUG Processing 497/553 atomic regions from SNP 148827 to 149427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,371 DEBUG Processing 570/589 atomic regions from SNP 170722 to 171322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,396 DEBUG Processing 133/525 atomic regions from SNP 39666 to 40266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,443 DEBUG Processing 498/553 atomic regions from SNP 149127 to 149727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,448 DEBUG Processing 640/651 atomic regions from SNP 191820 to 192420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,610 DEBUG Processing 571/589 atomic regions from SNP 171022 to 171622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,620 DEBUG Processing 134/525 atomic regions from SNP 39966 to 40566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,626 DEBUG Processing 499/553 atomic regions from SNP 149427 to 150027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,662 DEBUG Processing 641/651 atomic regions from SNP 192120 to 192720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,811 DEBUG Processing 500/553 atomic regions from SNP 149727 to 150327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,824 DEBUG Processing 572/589 atomic regions from SNP 171322 to 171922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,837 DEBUG Processing 135/525 atomic regions from SNP 40266 to 40866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,873 DEBUG Processing 642/651 atomic regions from SNP 192420 to 193020 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,996 DEBUG Processing 501/553 atomic regions from SNP 150027 to 150627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,037 DEBUG Processing 573/589 atomic regions from SNP 171622 to 172222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,037 DEBUG Processing 136/525 atomic regions from SNP 40566 to 41166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,121 DEBUG Processing 643/651 atomic regions from SNP 192720 to 193320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,180 DEBUG Processing 502/553 atomic regions from SNP 150327 to 150927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,255 DEBUG Processing 137/525 atomic regions from SNP 40866 to 41466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,257 DEBUG Processing 574/589 atomic regions from SNP 171922 to 172522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,355 DEBUG Processing 644/651 atomic regions from SNP 193020 to 193620 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,386 DEBUG Processing 503/553 atomic regions from SNP 150627 to 151227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,476 DEBUG Processing 138/525 atomic regions from SNP 41166 to 41766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,493 DEBUG Processing 575/589 atomic regions from SNP 172222 to 172822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,577 DEBUG Processing 645/651 atomic regions from SNP 193320 to 193920 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,603 DEBUG Processing 504/553 atomic regions from SNP 150927 to 151527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,674 DEBUG Processing 139/525 atomic regions from SNP 41466 to 42066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,703 DEBUG Processing 576/589 atomic regions from SNP 172522 to 173122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,794 DEBUG Processing 646/651 atomic regions from SNP 193620 to 194220 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,821 DEBUG Processing 505/553 atomic regions from SNP 151227 to 151827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,887 DEBUG Processing 140/525 atomic regions from SNP 41766 to 42366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,920 DEBUG Processing 577/589 atomic regions from SNP 172822 to 173422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,010 DEBUG Processing 647/651 atomic regions from SNP 193920 to 194520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,030 DEBUG Processing 506/553 atomic regions from SNP 151527 to 152127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,105 DEBUG Processing 141/525 atomic regions from SNP 42066 to 42666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,130 DEBUG Processing 578/589 atomic regions from SNP 173122 to 173722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,217 DEBUG Processing 507/553 atomic regions from SNP 151827 to 152427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,231 DEBUG Processing 648/651 atomic regions from SNP 194220 to 194820 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,326 DEBUG Processing 142/525 atomic regions from SNP 42366 to 42966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,338 DEBUG Processing 579/589 atomic regions from SNP 173422 to 174022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,412 DEBUG Processing 508/553 atomic regions from SNP 152127 to 152727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,451 DEBUG Processing 649/651 atomic regions from SNP 194520 to 195120 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,535 DEBUG Processing 143/525 atomic regions from SNP 42666 to 43266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,571 DEBUG Processing 580/589 atomic regions from SNP 173722 to 174322 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,634 DEBUG Processing 509/553 atomic regions from SNP 152427 to 153027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,674 DEBUG Processing 650/651 atomic regions from SNP 194820 to 195420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,752 DEBUG Processing 144/525 atomic regions from SNP 42966 to 43566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,819 DEBUG Processing 581/589 atomic regions from SNP 174022 to 174622 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,849 DEBUG Processing 510/553 atomic regions from SNP 152727 to 153327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,899 DEBUG Processing 651/651 atomic regions from SNP 195120 to 195720 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,984 DEBUG Processing 145/525 atomic regions from SNP 43266 to 43866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,029 DEBUG Unique SNPs positions in subchromosome 1: 195721 2025-01-31 09:57:28,056 DEBUG Processing 511/553 atomic regions from SNP 153027 to 153627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,060 DEBUG Processing 582/589 atomic regions from SNP 174322 to 174922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,199 DEBUG Processing 146/525 atomic regions from SNP 43566 to 44166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,255 DEBUG Processing 512/553 atomic regions from SNP 153327 to 153927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,292 DEBUG Processing 583/589 atomic regions from SNP 174622 to 175222 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,410 DEBUG Processing 147/525 atomic regions from SNP 43866 to 44466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,478 DEBUG Processing 513/553 atomic regions from SNP 153627 to 154227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,515 DEBUG Processing 584/589 atomic regions from SNP 174922 to 175522 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,612 DEBUG Processing 148/525 atomic regions from SNP 44166 to 44766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,702 DEBUG Processing 514/553 atomic regions from SNP 153927 to 154527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,723 DEBUG Processing 585/589 atomic regions from SNP 175222 to 175822 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,810 DEBUG Processing 149/525 atomic regions from SNP 44466 to 45066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,923 DEBUG Processing 515/553 atomic regions from SNP 154227 to 154827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,932 DEBUG Processing 586/589 atomic regions from SNP 175522 to 176122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,004 DEBUG Processing 150/525 atomic regions from SNP 44766 to 45366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,148 DEBUG Processing 516/553 atomic regions from SNP 154527 to 155127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,164 DEBUG Processing 587/589 atomic regions from SNP 175822 to 176422 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,200 DEBUG Processing 151/525 atomic regions from SNP 45066 to 45666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,363 DEBUG Processing 517/553 atomic regions from SNP 154827 to 155427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,397 DEBUG Processing 152/525 atomic regions from SNP 45366 to 45966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,412 DEBUG Processing 588/589 atomic regions from SNP 176122 to 176722 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,576 DEBUG Processing 518/553 atomic regions from SNP 155127 to 155727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,599 DEBUG Processing 153/525 atomic regions from SNP 45666 to 46266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,633 DEBUG Processing 589/589 atomic regions from SNP 176422 to 177022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,771 DEBUG Unique SNPs positions in subchromosome 1: 177023 2025-01-31 09:57:29,794 DEBUG Processing 154/525 atomic regions from SNP 45966 to 46566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:29,796 DEBUG Processing 519/553 atomic regions from SNP 155427 to 156027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,989 DEBUG Processing 155/525 atomic regions from SNP 46266 to 46866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,012 DEBUG Processing 520/553 atomic regions from SNP 155727 to 156327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,048 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:57:30,049 DEBUG chr18: Signal quantile: 0.992. signal threshold: 10. Best RMSEA: 0.012 2025-01-31 09:57:30,183 DEBUG Processing 156/525 atomic regions from SNP 46566 to 47166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,222 DEBUG Processing 521/553 atomic regions from SNP 156027 to 156627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,377 DEBUG Processing 157/525 atomic regions from SNP 46866 to 47466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,439 DEBUG Processing 522/553 atomic regions from SNP 156327 to 156927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,608 DEBUG Processing 158/525 atomic regions from SNP 47166 to 47766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,631 DEBUG Processing 523/553 atomic regions from SNP 156627 to 157227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,818 DEBUG Processing 159/525 atomic regions from SNP 47466 to 48066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:30,829 DEBUG Processing 524/553 atomic regions from SNP 156927 to 157527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,020 DEBUG Processing 525/553 atomic regions from SNP 157227 to 157827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,026 DEBUG Processing 160/525 atomic regions from SNP 47766 to 48366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,210 DEBUG Processing 526/553 atomic regions from SNP 157527 to 158127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,232 DEBUG Processing 161/525 atomic regions from SNP 48066 to 48666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,423 DEBUG Processing 527/553 atomic regions from SNP 157827 to 158427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,428 DEBUG Processing 162/525 atomic regions from SNP 48366 to 48966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,570 DEBUG chr18 total SNP count: 153358 2025-01-31 09:57:31,570 DEBUG chr18 length: 90702639 2025-01-31 09:57:31,570 DEBUG ----------------------------------------- 2025-01-31 09:57:31,570 INFO Processing SNPs in chr18 2025-01-31 09:57:31,640 DEBUG Processing 163/525 atomic regions from SNP 48666 to 49266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,647 DEBUG Processing 528/553 atomic regions from SNP 158127 to 158727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,729 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 153358)] 2025-01-31 09:57:31,837 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:31,840 DEBUG Processing 164/525 atomic regions from SNP 48966 to 49566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:31,857 DEBUG Processing 529/553 atomic regions from SNP 158427 to 159027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,035 DEBUG Processing 165/525 atomic regions from SNP 49266 to 49866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,058 DEBUG Processing 530/553 atomic regions from SNP 158727 to 159327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,230 DEBUG Processing 166/525 atomic regions from SNP 49566 to 50166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,273 DEBUG Processing 531/553 atomic regions from SNP 159027 to 159627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,419 DEBUG Processing 167/525 atomic regions from SNP 49866 to 50466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,486 DEBUG Processing 532/553 atomic regions from SNP 159327 to 159927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,607 DEBUG Processing 168/525 atomic regions from SNP 50166 to 50766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,699 DEBUG Processing 533/553 atomic regions from SNP 159627 to 160227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,798 DEBUG Processing 169/525 atomic regions from SNP 50466 to 51066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:32,891 DEBUG Processing 534/553 atomic regions from SNP 159927 to 160527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,993 DEBUG Processing 170/525 atomic regions from SNP 50766 to 51366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,079 DEBUG Processing 535/553 atomic regions from SNP 160227 to 160827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,209 DEBUG Processing 171/525 atomic regions from SNP 51066 to 51666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,265 DEBUG Processing 536/553 atomic regions from SNP 160527 to 161127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,423 DEBUG Processing 172/525 atomic regions from SNP 51366 to 51966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,452 DEBUG Processing 537/553 atomic regions from SNP 160827 to 161427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,639 DEBUG Processing 538/553 atomic regions from SNP 161127 to 161727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,651 DEBUG Processing 173/525 atomic regions from SNP 51666 to 52266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:33,825 DEBUG Processing 539/553 atomic regions from SNP 161427 to 162027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,863 DEBUG Processing 174/525 atomic regions from SNP 51966 to 52566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,011 DEBUG Processing 540/553 atomic regions from SNP 161727 to 162327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,054 DEBUG Processing 175/525 atomic regions from SNP 52266 to 52866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,197 DEBUG Processing 541/553 atomic regions from SNP 162027 to 162627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,274 DEBUG Processing 176/525 atomic regions from SNP 52566 to 53166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,394 DEBUG Subchromosome time: 197.18008434772491, subchromosome SNPs: 195721 2025-01-31 09:57:34,394 DEBUG Estimated BADs: [2.41, 0.40, 1.20, 0.60, 1.20, 6.02, 1.20, 0.24, 1.20, 0.40, 1.20, 3.61, 1.20, 0.30, 0.60, 2.41, 3.61, 1.20, 0.24, 0.60, 2.41, 12.05, 1.20, 4.82, 1.20] SNP counts: [4010, 2699, 4796, 9355, 8820, 547, 20972, 5819, 3486, 11092, 4706, 1483, 12718, 5090, 10015, 25518, 8026, 8051, 7815, 2766, 11141, 291, 9849, 5060, 11596] SNP IDs counts: [4010, 2699, 4796, 9355, 8820, 547, 20972, 5819, 3486, 11092, 4706, 1483, 12718, 5090, 10015, 25518, 8026, 8051, 7815, 2766, 11141, 291, 9849, 5060, 11596] Critical gap: 607515bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.28Mbp, 6.92Mbp, 9.64Mbp, 15.19Mbp, 24.56Mbp, 24.86Mbp, 36.50Mbp, 39.99Mbp, 42.14Mbp, 48.88Mbp, 51.67Mbp, 52.50Mbp, 59.91Mbp, 63.12Mbp, 69.12Mbp, 83.04Mbp, 87.26Mbp, 92.30Mbp, 97.13Mbp, 98.73Mbp, 104.93Mbp, 105.08Mbp, 110.38Mbp, 113.03Mbp, 120.13Mbp] 2025-01-31 09:57:34,394 DEBUG chr12 time: 197.18057669326663 s 2025-01-31 09:57:34,403 DEBUG Processing 542/553 atomic regions from SNP 162327 to 162927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,481 DEBUG Processing 177/525 atomic regions from SNP 52866 to 53466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,524 DEBUG chr12: Fitting background model for 25 segments 2025-01-31 09:57:34,620 DEBUG Processing 543/553 atomic regions from SNP 162627 to 163227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,702 DEBUG Processing 178/525 atomic regions from SNP 53166 to 53766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,802 DEBUG Processing 544/553 atomic regions from SNP 162927 to 163527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,933 DEBUG Processing 179/525 atomic regions from SNP 53466 to 54066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:34,987 DEBUG Processing 545/553 atomic regions from SNP 163227 to 163827 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,163 DEBUG Processing 180/525 atomic regions from SNP 53766 to 54366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,181 DEBUG Processing 546/553 atomic regions from SNP 163527 to 164127 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,374 DEBUG Processing 181/525 atomic regions from SNP 54066 to 54666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,385 DEBUG Processing 547/553 atomic regions from SNP 163827 to 164427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,584 DEBUG Processing 182/525 atomic regions from SNP 54366 to 54966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,589 DEBUG Processing 548/553 atomic regions from SNP 164127 to 164727 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,780 DEBUG Processing 549/553 atomic regions from SNP 164427 to 165027 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,804 DEBUG Processing 183/525 atomic regions from SNP 54666 to 55266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:35,981 DEBUG Processing 550/553 atomic regions from SNP 164727 to 165327 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,033 DEBUG Processing 184/525 atomic regions from SNP 54966 to 55566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,187 DEBUG Processing 551/553 atomic regions from SNP 165027 to 165627 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,242 DEBUG Processing 185/525 atomic regions from SNP 55266 to 55866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,378 DEBUG Processing 552/553 atomic regions from SNP 165327 to 165927 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,434 DEBUG Processing 186/525 atomic regions from SNP 55566 to 56166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,578 DEBUG Processing 553/553 atomic regions from SNP 165627 to 166227 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,622 DEBUG Processing 187/525 atomic regions from SNP 55866 to 56466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,725 DEBUG Unique SNPs positions in subchromosome 1: 166228 2025-01-31 09:57:36,814 DEBUG Processing 188/525 atomic regions from SNP 56166 to 56766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,001 DEBUG Processing 189/525 atomic regions from SNP 56466 to 57066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,196 DEBUG Processing 190/525 atomic regions from SNP 56766 to 57366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,382 DEBUG Processing 191/525 atomic regions from SNP 57066 to 57666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,569 DEBUG Processing 192/525 atomic regions from SNP 57366 to 57966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,753 DEBUG Processing 193/525 atomic regions from SNP 57666 to 58266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,940 DEBUG Processing 194/525 atomic regions from SNP 57966 to 58566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,122 DEBUG Processing 195/525 atomic regions from SNP 58266 to 58866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,310 DEBUG Processing 196/525 atomic regions from SNP 58566 to 59166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,509 DEBUG Processing 197/525 atomic regions from SNP 58866 to 59466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,700 DEBUG Processing 198/525 atomic regions from SNP 59166 to 59766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,892 DEBUG Processing 199/525 atomic regions from SNP 59466 to 60066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,082 DEBUG Processing 200/525 atomic regions from SNP 59766 to 60366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,269 DEBUG Processing 201/525 atomic regions from SNP 60066 to 60666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,456 DEBUG Processing 202/525 atomic regions from SNP 60366 to 60966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,647 DEBUG Processing 203/525 atomic regions from SNP 60666 to 61266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,839 DEBUG Processing 204/525 atomic regions from SNP 60966 to 61566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,027 DEBUG Processing 205/525 atomic regions from SNP 61266 to 61866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,216 DEBUG Processing 206/525 atomic regions from SNP 61566 to 62166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,406 DEBUG Processing 207/525 atomic regions from SNP 61866 to 62466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,593 DEBUG Processing 208/525 atomic regions from SNP 62166 to 62766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,774 DEBUG Processing 209/525 atomic regions from SNP 62466 to 63066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,959 DEBUG Processing 210/525 atomic regions from SNP 62766 to 63366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,150 DEBUG Processing 211/525 atomic regions from SNP 63066 to 63666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,341 DEBUG Processing 212/525 atomic regions from SNP 63366 to 63966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,538 DEBUG Processing 213/525 atomic regions from SNP 63666 to 64266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,738 DEBUG Processing 214/525 atomic regions from SNP 63966 to 64566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,930 DEBUG Processing 215/525 atomic regions from SNP 64266 to 64866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,118 DEBUG Processing 216/525 atomic regions from SNP 64566 to 65166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,303 DEBUG Processing 217/525 atomic regions from SNP 64866 to 65466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,498 DEBUG Processing 218/525 atomic regions from SNP 65166 to 65766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,686 DEBUG Processing 219/525 atomic regions from SNP 65466 to 66066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,876 DEBUG Processing 220/525 atomic regions from SNP 65766 to 66366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,066 DEBUG Processing 221/525 atomic regions from SNP 66066 to 66666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,253 DEBUG Processing 222/525 atomic regions from SNP 66366 to 66966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,442 DEBUG Processing 223/525 atomic regions from SNP 66666 to 67266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,627 DEBUG Processing 224/525 atomic regions from SNP 66966 to 67566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,810 DEBUG Processing 225/525 atomic regions from SNP 67266 to 67866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,997 DEBUG Processing 226/525 atomic regions from SNP 67566 to 68166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,189 DEBUG Processing 227/525 atomic regions from SNP 67866 to 68466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,273 DEBUG Subchromosome time: 155.4783306978643, subchromosome SNPs: 166228 2025-01-31 09:57:44,273 DEBUG Estimated BADs: [4.06, 0.45, 2.71, 0.68, 2.71, 1.35, 5.42, 0.34, 2.71, 0.45, 2.71, 0.45, 1.35, 0.45, 1.35, 0.27, 1.35, 0.23, 0.68, 1.35, 5.42, 2.71] SNP counts: [3407, 5109, 1794, 1510, 8402, 4308, 3610, 1048, 6361, 10475, 18392, 7405, 3306, 7527, 2096, 7942, 6723, 7176, 39650, 4317, 8921, 6749] SNP IDs counts: [3407, 5109, 1794, 1510, 8402, 4308, 3610, 1048, 6361, 10475, 18392, 7405, 3306, 7527, 2096, 7942, 6723, 7176, 39650, 4317, 8921, 6749] Critical gap: 535046bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.28Mbp, 8.11Mbp, 9.10Mbp, 9.94Mbp, 14.53Mbp, 17.11Mbp, 19.03Mbp, 19.75Mbp, 23.24Mbp, 29.22Mbp, 39.12Mbp, 43.38Mbp, 45.20Mbp, 49.76Mbp, 50.89Mbp, 55.82Mbp, 59.76Mbp, 64.35Mbp, 87.34Mbp, 89.76Mbp, 94.49Mbp, 98.21Mbp] 2025-01-31 09:57:44,273 DEBUG chr16 time: 155.47883984073997 s 2025-01-31 09:57:44,364 DEBUG chr16: Fitting background model for 22 segments 2025-01-31 09:57:44,386 DEBUG Processing 228/525 atomic regions from SNP 68166 to 68766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,578 DEBUG Processing 229/525 atomic regions from SNP 68466 to 69066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,776 DEBUG Processing 230/525 atomic regions from SNP 68766 to 69366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,972 DEBUG Processing 231/525 atomic regions from SNP 69066 to 69666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,170 DEBUG Processing 232/525 atomic regions from SNP 69366 to 69966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,363 DEBUG Processing 233/525 atomic regions from SNP 69666 to 70266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,559 DEBUG Processing 234/525 atomic regions from SNP 69966 to 70566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,750 DEBUG Processing 235/525 atomic regions from SNP 70266 to 70866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,902 DEBUG Subchromosome time: 188.56374802440405, subchromosome SNPs: 177023 2025-01-31 09:57:45,903 DEBUG Estimated BADs: [1.65, 4.95, 13.20, 4.95, 8.25, 1.65, 0.27, 1.65, 0.27, 1.65, 0.27, 1.65, 0.33, 1.65, 3.30, 0.82, 0.18, 0.55, 3.30, 0.82, 8.25, 0.41, 1.65, 9.90, 4.95, 1.65, 4.95, 0.41, 1.65, 4.95, 0.82] SNP counts: [3332, 5307, 1868, 5207, 2713, 16674, 4019, 744, 1951, 1213, 5676, 920, 3558, 7927, 1139, 10164, 8089, 13628, 3822, 12369, 119, 10002, 5133, 1749, 10368, 11757, 1659, 5299, 10639, 9150, 828] SNP IDs counts: [3332, 5307, 1868, 5207, 2713, 16674, 4019, 744, 1951, 1213, 5676, 920, 3558, 7927, 1139, 10164, 8089, 13628, 3822, 12369, 119, 10002, 5133, 1749, 10368, 11757, 1659, 5299, 10639, 9150, 828] Critical gap: 550648bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 8.09Mbp, 9.14Mbp, 12.08Mbp, 13.52Mbp, 23.16Mbp, 25.61Mbp, 26.00Mbp, 27.15Mbp, 27.82Mbp, 31.20Mbp, 31.70Mbp, 33.87Mbp, 38.28Mbp, 39.04Mbp, 44.86Mbp, 49.93Mbp, 57.82Mbp, 59.85Mbp, 67.12Mbp, 67.18Mbp, 73.04Mbp, 75.88Mbp, 76.80Mbp, 82.38Mbp, 88.73Mbp, 89.63Mbp, 92.65Mbp, 98.50Mbp, 103.36Mbp, 104.04Mbp] 2025-01-31 09:57:45,903 DEBUG chr15 time: 188.56435665115714 s 2025-01-31 09:57:45,959 DEBUG Processing 236/525 atomic regions from SNP 70566 to 71166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,013 DEBUG chr15: Fitting background model for 31 segments 2025-01-31 09:57:46,189 DEBUG Processing 237/525 atomic regions from SNP 70866 to 71466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,411 DEBUG Processing 238/525 atomic regions from SNP 71166 to 71766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,628 DEBUG Processing 239/525 atomic regions from SNP 71466 to 72066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,864 DEBUG Processing 240/525 atomic regions from SNP 71766 to 72366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,091 DEBUG Processing 241/525 atomic regions from SNP 72066 to 72666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,303 DEBUG Processing 242/525 atomic regions from SNP 72366 to 72966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,528 DEBUG Processing 243/525 atomic regions from SNP 72666 to 73266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,762 DEBUG Processing 244/525 atomic regions from SNP 72966 to 73566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,998 DEBUG Processing 245/525 atomic regions from SNP 73266 to 73866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,202 DEBUG Processing 246/525 atomic regions from SNP 73566 to 74166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,403 DEBUG Processing 247/525 atomic regions from SNP 73866 to 74466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,610 DEBUG Processing 248/525 atomic regions from SNP 74166 to 74766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,841 DEBUG Processing 249/525 atomic regions from SNP 74466 to 75066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,066 DEBUG Processing 250/525 atomic regions from SNP 74766 to 75366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,294 DEBUG Processing 251/525 atomic regions from SNP 75066 to 75666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,528 DEBUG Processing 252/525 atomic regions from SNP 75366 to 75966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,737 DEBUG Processing 253/525 atomic regions from SNP 75666 to 76266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,949 DEBUG Processing 254/525 atomic regions from SNP 75966 to 76566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,976 DEBUG Segmenting atomic regions: 2025-01-31 09:57:50,048 DEBUG Processing 1/510 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,157 DEBUG Processing 255/525 atomic regions from SNP 76266 to 76866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,231 DEBUG Processing 2/510 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,351 DEBUG Processing 256/525 atomic regions from SNP 76566 to 77166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,418 DEBUG Processing 3/510 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,542 DEBUG Processing 257/525 atomic regions from SNP 76866 to 77466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,606 DEBUG Processing 4/510 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,739 DEBUG Processing 258/525 atomic regions from SNP 77166 to 77766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,792 DEBUG Processing 5/510 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,931 DEBUG Processing 259/525 atomic regions from SNP 77466 to 78066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,983 DEBUG Processing 6/510 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,126 DEBUG Processing 260/525 atomic regions from SNP 77766 to 78366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,169 DEBUG Processing 7/510 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,322 DEBUG Processing 261/525 atomic regions from SNP 78066 to 78666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,351 DEBUG Processing 8/510 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,520 DEBUG Processing 262/525 atomic regions from SNP 78366 to 78966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,535 DEBUG Processing 9/510 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,722 DEBUG Processing 263/525 atomic regions from SNP 78666 to 79266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,727 DEBUG Processing 10/510 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,918 DEBUG Processing 11/510 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,922 DEBUG Processing 264/525 atomic regions from SNP 78966 to 79566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,117 DEBUG Processing 12/510 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,122 DEBUG Processing 265/525 atomic regions from SNP 79266 to 79866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,306 DEBUG Processing 13/510 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,321 DEBUG Processing 266/525 atomic regions from SNP 79566 to 80166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,494 DEBUG Processing 14/510 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,514 DEBUG Processing 267/525 atomic regions from SNP 79866 to 80466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,681 DEBUG Processing 15/510 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,709 DEBUG Processing 268/525 atomic regions from SNP 80166 to 80766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,865 DEBUG Processing 16/510 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,901 DEBUG Processing 269/525 atomic regions from SNP 80466 to 81066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,053 DEBUG Processing 17/510 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,092 DEBUG Processing 270/525 atomic regions from SNP 80766 to 81366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,242 DEBUG Processing 18/510 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,283 DEBUG Processing 271/525 atomic regions from SNP 81066 to 81666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,439 DEBUG Processing 19/510 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,479 DEBUG Processing 272/525 atomic regions from SNP 81366 to 81966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,626 DEBUG Processing 20/510 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,676 DEBUG Processing 273/525 atomic regions from SNP 81666 to 82266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,820 DEBUG Processing 21/510 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,879 DEBUG Processing 274/525 atomic regions from SNP 81966 to 82566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,004 DEBUG Processing 22/510 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,077 DEBUG Processing 275/525 atomic regions from SNP 82266 to 82866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,188 DEBUG Processing 23/510 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,273 DEBUG Processing 276/525 atomic regions from SNP 82566 to 83166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,373 DEBUG Processing 24/510 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,471 DEBUG Processing 277/525 atomic regions from SNP 82866 to 83466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,561 DEBUG Processing 25/510 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,675 DEBUG Processing 278/525 atomic regions from SNP 83166 to 83766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,752 DEBUG Processing 26/510 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,874 DEBUG Processing 279/525 atomic regions from SNP 83466 to 84066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,938 DEBUG Processing 27/510 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,075 DEBUG Processing 280/525 atomic regions from SNP 83766 to 84366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,129 DEBUG Processing 28/510 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,271 DEBUG Processing 281/525 atomic regions from SNP 84066 to 84666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,313 DEBUG Processing 29/510 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,470 DEBUG Processing 282/525 atomic regions from SNP 84366 to 84966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,507 DEBUG Processing 30/510 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,665 DEBUG Processing 283/525 atomic regions from SNP 84666 to 85266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,696 DEBUG Processing 31/510 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,857 DEBUG Processing 284/525 atomic regions from SNP 84966 to 85566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,878 DEBUG Processing 32/510 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,061 DEBUG Processing 285/525 atomic regions from SNP 85266 to 85866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,063 DEBUG Processing 33/510 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,243 DEBUG Processing 34/510 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,258 DEBUG Processing 286/525 atomic regions from SNP 85566 to 86166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,427 DEBUG Processing 35/510 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,456 DEBUG Processing 287/525 atomic regions from SNP 85866 to 86466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,614 DEBUG Processing 36/510 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,658 DEBUG Processing 288/525 atomic regions from SNP 86166 to 86766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,806 DEBUG Processing 37/510 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,864 DEBUG Processing 289/525 atomic regions from SNP 86466 to 87066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,995 DEBUG Processing 38/510 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,063 DEBUG Processing 290/525 atomic regions from SNP 86766 to 87366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,184 DEBUG Processing 39/510 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,265 DEBUG Processing 291/525 atomic regions from SNP 87066 to 87666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,374 DEBUG Processing 40/510 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,468 DEBUG Processing 292/525 atomic regions from SNP 87366 to 87966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,574 DEBUG Processing 41/510 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,676 DEBUG Processing 293/525 atomic regions from SNP 87666 to 88266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,769 DEBUG Processing 42/510 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,880 DEBUG Processing 294/525 atomic regions from SNP 87966 to 88566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,960 DEBUG Processing 43/510 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,085 DEBUG Processing 295/525 atomic regions from SNP 88266 to 88866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,172 DEBUG Processing 44/510 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,290 DEBUG Processing 296/525 atomic regions from SNP 88566 to 89166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,367 DEBUG Processing 45/510 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,497 DEBUG Processing 297/525 atomic regions from SNP 88866 to 89466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,556 DEBUG Processing 46/510 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,743 DEBUG Processing 298/525 atomic regions from SNP 89166 to 89766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,755 DEBUG Processing 47/510 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,948 DEBUG Processing 48/510 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,980 DEBUG Processing 299/525 atomic regions from SNP 89466 to 90066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,147 DEBUG Processing 49/510 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,217 DEBUG Processing 300/525 atomic regions from SNP 89766 to 90366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,349 DEBUG Processing 50/510 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,455 DEBUG Processing 301/525 atomic regions from SNP 90066 to 90666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,558 DEBUG Processing 51/510 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,683 DEBUG Processing 302/525 atomic regions from SNP 90366 to 90966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,757 DEBUG Processing 52/510 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,909 DEBUG Processing 303/525 atomic regions from SNP 90666 to 91266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,955 DEBUG Processing 53/510 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,140 DEBUG Processing 304/525 atomic regions from SNP 90966 to 91566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,151 DEBUG Processing 54/510 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,346 DEBUG Processing 55/510 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,365 DEBUG Processing 305/525 atomic regions from SNP 91266 to 91866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,542 DEBUG Processing 56/510 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,579 DEBUG Processing 306/525 atomic regions from SNP 91566 to 92166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,747 DEBUG Processing 57/510 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,789 DEBUG Processing 307/525 atomic regions from SNP 91866 to 92466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,939 DEBUG Processing 58/510 atomic regions from SNP 17157 to 17757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,991 DEBUG Processing 308/525 atomic regions from SNP 92166 to 92766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,141 DEBUG Processing 59/510 atomic regions from SNP 17457 to 18057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,202 DEBUG Processing 309/525 atomic regions from SNP 92466 to 93066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,304 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:58:01,332 DEBUG Processing 60/510 atomic regions from SNP 17757 to 18357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,403 DEBUG Processing 310/525 atomic regions from SNP 92766 to 93366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,523 DEBUG Processing 61/510 atomic regions from SNP 18057 to 18657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,606 DEBUG Processing 311/525 atomic regions from SNP 93066 to 93666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,710 DEBUG Processing 62/510 atomic regions from SNP 18357 to 18957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,808 DEBUG Processing 312/525 atomic regions from SNP 93366 to 93966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,907 DEBUG Processing 63/510 atomic regions from SNP 18657 to 19257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,011 DEBUG Processing 313/525 atomic regions from SNP 93666 to 94266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,105 DEBUG Processing 64/510 atomic regions from SNP 18957 to 19557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,211 DEBUG Processing 314/525 atomic regions from SNP 93966 to 94566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,301 DEBUG Processing 65/510 atomic regions from SNP 19257 to 19857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,414 DEBUG Processing 315/525 atomic regions from SNP 94266 to 94866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,492 DEBUG Processing 66/510 atomic regions from SNP 19557 to 20157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,625 DEBUG Processing 316/525 atomic regions from SNP 94566 to 95166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,689 DEBUG Processing 67/510 atomic regions from SNP 19857 to 20457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,827 DEBUG Processing 317/525 atomic regions from SNP 94866 to 95466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,869 DEBUG Processing 68/510 atomic regions from SNP 20157 to 20757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,026 DEBUG Processing 318/525 atomic regions from SNP 95166 to 95766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,053 DEBUG Processing 69/510 atomic regions from SNP 20457 to 21057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,229 DEBUG Processing 319/525 atomic regions from SNP 95466 to 96066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,243 DEBUG Processing 70/510 atomic regions from SNP 20757 to 21357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,430 DEBUG Processing 71/510 atomic regions from SNP 21057 to 21657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,432 DEBUG Processing 320/525 atomic regions from SNP 95766 to 96366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,613 DEBUG Processing 72/510 atomic regions from SNP 21357 to 21957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,628 DEBUG Processing 321/525 atomic regions from SNP 96066 to 96666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,801 DEBUG Processing 73/510 atomic regions from SNP 21657 to 22257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,824 DEBUG Processing 322/525 atomic regions from SNP 96366 to 96966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,980 DEBUG Processing 74/510 atomic regions from SNP 21957 to 22557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,016 DEBUG Processing 323/525 atomic regions from SNP 96666 to 97266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,160 DEBUG Processing 75/510 atomic regions from SNP 22257 to 22857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,212 DEBUG Processing 324/525 atomic regions from SNP 96966 to 97566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,348 DEBUG Processing 76/510 atomic regions from SNP 22557 to 23157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,417 DEBUG Processing 325/525 atomic regions from SNP 97266 to 97866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,533 DEBUG Processing 77/510 atomic regions from SNP 22857 to 23457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,616 DEBUG Processing 326/525 atomic regions from SNP 97566 to 98166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,721 DEBUG Processing 78/510 atomic regions from SNP 23157 to 23757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,822 DEBUG Processing 327/525 atomic regions from SNP 97866 to 98466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,910 DEBUG Processing 79/510 atomic regions from SNP 23457 to 24057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,024 DEBUG Processing 328/525 atomic regions from SNP 98166 to 98766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,106 DEBUG Processing 80/510 atomic regions from SNP 23757 to 24357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,239 DEBUG Processing 329/525 atomic regions from SNP 98466 to 99066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,304 DEBUG Processing 81/510 atomic regions from SNP 24057 to 24657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,489 DEBUG Processing 330/525 atomic regions from SNP 98766 to 99366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,555 DEBUG Processing 82/510 atomic regions from SNP 24357 to 24957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,743 DEBUG Processing 331/525 atomic regions from SNP 99066 to 99666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,768 DEBUG Processing 83/510 atomic regions from SNP 24657 to 25257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,090 DEBUG Processing 84/510 atomic regions from SNP 24957 to 25557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,092 DEBUG Processing 332/525 atomic regions from SNP 99366 to 99966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,406 DEBUG Processing 85/510 atomic regions from SNP 25257 to 25857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,419 DEBUG Processing 333/525 atomic regions from SNP 99666 to 100266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,611 DEBUG Processing 86/510 atomic regions from SNP 25557 to 26157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,647 DEBUG Processing 334/525 atomic regions from SNP 99966 to 100566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,819 DEBUG Processing 87/510 atomic regions from SNP 25857 to 26457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,896 DEBUG Processing 335/525 atomic regions from SNP 100266 to 100866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,056 DEBUG Processing 88/510 atomic regions from SNP 26157 to 26757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,131 DEBUG Processing 336/525 atomic regions from SNP 100566 to 101166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,241 DEBUG Processing 89/510 atomic regions from SNP 26457 to 27057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,341 DEBUG Processing 337/525 atomic regions from SNP 100866 to 101466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,419 DEBUG Processing 90/510 atomic regions from SNP 26757 to 27357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,542 DEBUG Processing 338/525 atomic regions from SNP 101166 to 101766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,597 DEBUG Processing 91/510 atomic regions from SNP 27057 to 27657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,738 DEBUG Processing 339/525 atomic regions from SNP 101466 to 102066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,776 DEBUG Processing 92/510 atomic regions from SNP 27357 to 27957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,935 DEBUG Processing 340/525 atomic regions from SNP 101766 to 102366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,960 DEBUG Processing 93/510 atomic regions from SNP 27657 to 28257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,142 DEBUG Processing 341/525 atomic regions from SNP 102066 to 102666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,145 DEBUG Processing 94/510 atomic regions from SNP 27957 to 28557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,329 DEBUG Processing 95/510 atomic regions from SNP 28257 to 28857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,347 DEBUG Processing 342/525 atomic regions from SNP 102366 to 102966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,511 DEBUG Processing 96/510 atomic regions from SNP 28557 to 29157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,546 DEBUG Processing 343/525 atomic regions from SNP 102666 to 103266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,696 DEBUG Processing 97/510 atomic regions from SNP 28857 to 29457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,741 DEBUG Processing 344/525 atomic regions from SNP 102966 to 103566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,877 DEBUG Processing 98/510 atomic regions from SNP 29157 to 29757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,946 DEBUG Processing 345/525 atomic regions from SNP 103266 to 103866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,058 DEBUG Processing 99/510 atomic regions from SNP 29457 to 30057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,156 DEBUG Processing 346/525 atomic regions from SNP 103566 to 104166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,250 DEBUG Processing 100/510 atomic regions from SNP 29757 to 30357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,389 DEBUG Processing 347/525 atomic regions from SNP 103866 to 104466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,479 DEBUG Processing 101/510 atomic regions from SNP 30057 to 30657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,701 DEBUG Processing 348/525 atomic regions from SNP 104166 to 104766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,799 DEBUG Processing 102/510 atomic regions from SNP 30357 to 30957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,984 DEBUG Processing 349/525 atomic regions from SNP 104466 to 105066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,055 DEBUG Processing 103/510 atomic regions from SNP 30657 to 31257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,218 DEBUG Processing 350/525 atomic regions from SNP 104766 to 105366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,262 DEBUG Processing 104/510 atomic regions from SNP 30957 to 31557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,437 DEBUG Processing 351/525 atomic regions from SNP 105066 to 105666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,481 DEBUG Processing 105/510 atomic regions from SNP 31257 to 31857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,715 DEBUG Processing 352/525 atomic regions from SNP 105366 to 105966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,726 DEBUG Processing 106/510 atomic regions from SNP 31557 to 32157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,033 DEBUG Processing 107/510 atomic regions from SNP 31857 to 32457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,045 DEBUG Processing 353/525 atomic regions from SNP 105666 to 106266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,174 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:58:11,183 DEBUG chr19: Signal quantile: 0.983. signal threshold: 10. Best RMSEA: 0.012 2025-01-31 09:58:11,275 DEBUG Processing 108/510 atomic regions from SNP 32157 to 32757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,325 DEBUG Processing 354/525 atomic regions from SNP 105966 to 106566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,545 DEBUG Processing 109/510 atomic regions from SNP 32457 to 33057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,633 DEBUG Processing 355/525 atomic regions from SNP 106266 to 106866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,852 DEBUG Processing 110/510 atomic regions from SNP 32757 to 33357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,985 DEBUG Processing 356/525 atomic regions from SNP 106566 to 107166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,135 DEBUG Processing 111/510 atomic regions from SNP 33057 to 33657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,337 DEBUG Processing 357/525 atomic regions from SNP 106866 to 107466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,432 DEBUG Processing 112/510 atomic regions from SNP 33357 to 33957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,565 DEBUG Processing 358/525 atomic regions from SNP 107166 to 107766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,636 DEBUG Processing 113/510 atomic regions from SNP 33657 to 34257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,812 DEBUG Processing 359/525 atomic regions from SNP 107466 to 108066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,878 DEBUG Processing 114/510 atomic regions from SNP 33957 to 34557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,017 DEBUG Processing 360/525 atomic regions from SNP 107766 to 108366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,067 DEBUG chr19 total SNP count: 101611 2025-01-31 09:58:13,068 DEBUG chr19 length: 61431566 2025-01-31 09:58:13,068 DEBUG ----------------------------------------- 2025-01-31 09:58:13,068 INFO Processing SNPs in chr19 2025-01-31 09:58:13,080 DEBUG Processing 115/510 atomic regions from SNP 34257 to 34857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,179 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 101611)] 2025-01-31 09:58:13,219 DEBUG Processing 361/525 atomic regions from SNP 108066 to 108666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,253 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:13,266 DEBUG Processing 116/510 atomic regions from SNP 34557 to 35157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,421 DEBUG Processing 362/525 atomic regions from SNP 108366 to 108966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,456 DEBUG Processing 117/510 atomic regions from SNP 34857 to 35457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,630 DEBUG Processing 363/525 atomic regions from SNP 108666 to 109266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,647 DEBUG Processing 118/510 atomic regions from SNP 35157 to 35757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,840 DEBUG Processing 364/525 atomic regions from SNP 108966 to 109566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,846 DEBUG Processing 119/510 atomic regions from SNP 35457 to 36057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,048 DEBUG Processing 365/525 atomic regions from SNP 109266 to 109866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,055 DEBUG Processing 120/510 atomic regions from SNP 35757 to 36357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,249 DEBUG Processing 366/525 atomic regions from SNP 109566 to 110166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,280 DEBUG Processing 121/510 atomic regions from SNP 36057 to 36657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,452 DEBUG Processing 367/525 atomic regions from SNP 109866 to 110466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,486 DEBUG Processing 122/510 atomic regions from SNP 36357 to 36957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,661 DEBUG Processing 368/525 atomic regions from SNP 110166 to 110766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,691 DEBUG Processing 123/510 atomic regions from SNP 36657 to 37257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,869 DEBUG Processing 369/525 atomic regions from SNP 110466 to 111066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,894 DEBUG Processing 124/510 atomic regions from SNP 36957 to 37557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,068 DEBUG Processing 370/525 atomic regions from SNP 110766 to 111366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,078 DEBUG Processing 125/510 atomic regions from SNP 37257 to 37857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,259 DEBUG Processing 126/510 atomic regions from SNP 37557 to 38157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,270 DEBUG Processing 371/525 atomic regions from SNP 111066 to 111666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,440 DEBUG Processing 127/510 atomic regions from SNP 37857 to 38457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,467 DEBUG Processing 372/525 atomic regions from SNP 111366 to 111966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,619 DEBUG Processing 128/510 atomic regions from SNP 38157 to 38757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,661 DEBUG Processing 373/525 atomic regions from SNP 111666 to 112266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,799 DEBUG Processing 129/510 atomic regions from SNP 38457 to 39057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,860 DEBUG Processing 374/525 atomic regions from SNP 111966 to 112566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,981 DEBUG Processing 130/510 atomic regions from SNP 38757 to 39357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,061 DEBUG Processing 375/525 atomic regions from SNP 112266 to 112866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,165 DEBUG Processing 131/510 atomic regions from SNP 39057 to 39657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,267 DEBUG Processing 376/525 atomic regions from SNP 112566 to 113166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,344 DEBUG Processing 132/510 atomic regions from SNP 39357 to 39957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,474 DEBUG Processing 377/525 atomic regions from SNP 112866 to 113466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,527 DEBUG Processing 133/510 atomic regions from SNP 39657 to 40257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,679 DEBUG Processing 378/525 atomic regions from SNP 113166 to 113766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,712 DEBUG Processing 134/510 atomic regions from SNP 39957 to 40557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,892 DEBUG Processing 379/525 atomic regions from SNP 113466 to 114066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,899 DEBUG Processing 135/510 atomic regions from SNP 40257 to 40857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,088 DEBUG Processing 136/510 atomic regions from SNP 40557 to 41157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,107 DEBUG Processing 380/525 atomic regions from SNP 113766 to 114366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,272 DEBUG Processing 137/510 atomic regions from SNP 40857 to 41457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,318 DEBUG Processing 381/525 atomic regions from SNP 114066 to 114666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,454 DEBUG Processing 138/510 atomic regions from SNP 41157 to 41757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,520 DEBUG Processing 382/525 atomic regions from SNP 114366 to 114966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,632 DEBUG Processing 139/510 atomic regions from SNP 41457 to 42057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,719 DEBUG Processing 383/525 atomic regions from SNP 114666 to 115266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,814 DEBUG Processing 140/510 atomic regions from SNP 41757 to 42357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,926 DEBUG Processing 384/525 atomic regions from SNP 114966 to 115566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,998 DEBUG Processing 141/510 atomic regions from SNP 42057 to 42657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,134 DEBUG Processing 385/525 atomic regions from SNP 115266 to 115866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,184 DEBUG Processing 142/510 atomic regions from SNP 42357 to 42957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,370 DEBUG Processing 386/525 atomic regions from SNP 115566 to 116166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,373 DEBUG Processing 143/510 atomic regions from SNP 42657 to 43257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,561 DEBUG Processing 144/510 atomic regions from SNP 42957 to 43557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,597 DEBUG Processing 387/525 atomic regions from SNP 115866 to 116466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,745 DEBUG Processing 145/510 atomic regions from SNP 43257 to 43857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,811 DEBUG Processing 388/525 atomic regions from SNP 116166 to 116766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,929 DEBUG Processing 146/510 atomic regions from SNP 43557 to 44157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,021 DEBUG Processing 389/525 atomic regions from SNP 116466 to 117066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,119 DEBUG Processing 147/510 atomic regions from SNP 43857 to 44457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,246 DEBUG Processing 390/525 atomic regions from SNP 116766 to 117366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,308 DEBUG Processing 148/510 atomic regions from SNP 44157 to 44757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,448 DEBUG Processing 391/525 atomic regions from SNP 117066 to 117666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,492 DEBUG Processing 149/510 atomic regions from SNP 44457 to 45057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,658 DEBUG Processing 392/525 atomic regions from SNP 117366 to 117966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,673 DEBUG Processing 150/510 atomic regions from SNP 44757 to 45357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,863 DEBUG Processing 151/510 atomic regions from SNP 45057 to 45657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,879 DEBUG Processing 393/525 atomic regions from SNP 117666 to 118266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,058 DEBUG Processing 152/510 atomic regions from SNP 45357 to 45957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,097 DEBUG Processing 394/525 atomic regions from SNP 117966 to 118566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,250 DEBUG Processing 153/510 atomic regions from SNP 45657 to 46257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,311 DEBUG Processing 395/525 atomic regions from SNP 118266 to 118866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,446 DEBUG Processing 154/510 atomic regions from SNP 45957 to 46557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,509 DEBUG Processing 396/525 atomic regions from SNP 118566 to 119166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,635 DEBUG Processing 155/510 atomic regions from SNP 46257 to 46857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,712 DEBUG Processing 397/525 atomic regions from SNP 118866 to 119466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,820 DEBUG Processing 156/510 atomic regions from SNP 46557 to 47157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,917 DEBUG Processing 398/525 atomic regions from SNP 119166 to 119766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,009 DEBUG Processing 157/510 atomic regions from SNP 46857 to 47457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,124 DEBUG Processing 399/525 atomic regions from SNP 119466 to 120066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,201 DEBUG Processing 158/510 atomic regions from SNP 47157 to 47757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,327 DEBUG Processing 400/525 atomic regions from SNP 119766 to 120366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,388 DEBUG Processing 159/510 atomic regions from SNP 47457 to 48057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,525 DEBUG Processing 401/525 atomic regions from SNP 120066 to 120666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,572 DEBUG Processing 160/510 atomic regions from SNP 47757 to 48357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,717 DEBUG Processing 402/525 atomic regions from SNP 120366 to 120966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,760 DEBUG Processing 161/510 atomic regions from SNP 48057 to 48657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,914 DEBUG Processing 403/525 atomic regions from SNP 120666 to 121266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,948 DEBUG Processing 162/510 atomic regions from SNP 48357 to 48957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,117 DEBUG Processing 404/525 atomic regions from SNP 120966 to 121566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,137 DEBUG Processing 163/510 atomic regions from SNP 48657 to 49257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,315 DEBUG Processing 405/525 atomic regions from SNP 121266 to 121866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,326 DEBUG Processing 164/510 atomic regions from SNP 48957 to 49557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,518 DEBUG Processing 165/510 atomic regions from SNP 49257 to 49857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,529 DEBUG Processing 406/525 atomic regions from SNP 121566 to 122166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,726 DEBUG Processing 166/510 atomic regions from SNP 49557 to 50157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,732 DEBUG Processing 407/525 atomic regions from SNP 121866 to 122466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,908 DEBUG Processing 167/510 atomic regions from SNP 49857 to 50457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,928 DEBUG Processing 408/525 atomic regions from SNP 122166 to 122766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,090 DEBUG Processing 168/510 atomic regions from SNP 50157 to 50757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,124 DEBUG Processing 409/525 atomic regions from SNP 122466 to 123066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,280 DEBUG Processing 169/510 atomic regions from SNP 50457 to 51057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,320 DEBUG Processing 410/525 atomic regions from SNP 122766 to 123366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,464 DEBUG Processing 170/510 atomic regions from SNP 50757 to 51357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,517 DEBUG Processing 411/525 atomic regions from SNP 123066 to 123666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,648 DEBUG Processing 171/510 atomic regions from SNP 51057 to 51657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,719 DEBUG Processing 412/525 atomic regions from SNP 123366 to 123966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,830 DEBUG Processing 172/510 atomic regions from SNP 51357 to 51957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,919 DEBUG Processing 413/525 atomic regions from SNP 123666 to 124266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,011 DEBUG Processing 173/510 atomic regions from SNP 51657 to 52257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,119 DEBUG Processing 414/525 atomic regions from SNP 123966 to 124566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,194 DEBUG Processing 174/510 atomic regions from SNP 51957 to 52557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,318 DEBUG Processing 415/525 atomic regions from SNP 124266 to 124866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,378 DEBUG Processing 175/510 atomic regions from SNP 52257 to 52857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,518 DEBUG Processing 416/525 atomic regions from SNP 124566 to 125166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,559 DEBUG Processing 176/510 atomic regions from SNP 52557 to 53157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,714 DEBUG Processing 417/525 atomic regions from SNP 124866 to 125466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,740 DEBUG Processing 177/510 atomic regions from SNP 52857 to 53457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,908 DEBUG Processing 418/525 atomic regions from SNP 125166 to 125766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,921 DEBUG Processing 178/510 atomic regions from SNP 53157 to 53757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,101 DEBUG Processing 419/525 atomic regions from SNP 125466 to 126066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,107 DEBUG Processing 179/510 atomic regions from SNP 53457 to 54057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,300 DEBUG Processing 420/525 atomic regions from SNP 125766 to 126366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,312 DEBUG Processing 180/510 atomic regions from SNP 53757 to 54357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,495 DEBUG Processing 421/525 atomic regions from SNP 126066 to 126666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,529 DEBUG Processing 181/510 atomic regions from SNP 54057 to 54657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,531 DEBUG Segmenting atomic regions: 2025-01-31 09:58:25,580 DEBUG Processing 1/337 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,687 DEBUG Processing 422/525 atomic regions from SNP 126366 to 126966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,746 DEBUG Processing 182/510 atomic regions from SNP 54357 to 54957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,779 DEBUG Processing 2/337 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,889 DEBUG Processing 423/525 atomic regions from SNP 126666 to 127266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,957 DEBUG Processing 3/337 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:25,966 DEBUG Processing 183/510 atomic regions from SNP 54657 to 55257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,087 DEBUG Processing 424/525 atomic regions from SNP 126966 to 127566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,151 DEBUG Processing 4/337 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,178 DEBUG Processing 184/510 atomic regions from SNP 54957 to 55557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,291 DEBUG Processing 425/525 atomic regions from SNP 127266 to 127866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,344 DEBUG Processing 5/337 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,377 DEBUG Processing 185/510 atomic regions from SNP 55257 to 55857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,499 DEBUG Processing 426/525 atomic regions from SNP 127566 to 128166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,551 DEBUG Processing 6/337 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,562 DEBUG Processing 186/510 atomic regions from SNP 55557 to 56157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,712 DEBUG Processing 427/525 atomic regions from SNP 127866 to 128466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,765 DEBUG Processing 187/510 atomic regions from SNP 55857 to 56457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,771 DEBUG Processing 7/337 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,905 DEBUG Processing 428/525 atomic regions from SNP 128166 to 128766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,971 DEBUG Processing 8/337 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:26,981 DEBUG Processing 188/510 atomic regions from SNP 56157 to 56757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,099 DEBUG Processing 429/525 atomic regions from SNP 128466 to 129066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,146 DEBUG Processing 9/337 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,190 DEBUG Processing 189/510 atomic regions from SNP 56457 to 57057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,293 DEBUG Processing 430/525 atomic regions from SNP 128766 to 129366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,332 DEBUG Processing 10/337 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,403 DEBUG Processing 190/510 atomic regions from SNP 56757 to 57357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,487 DEBUG Processing 431/525 atomic regions from SNP 129066 to 129666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,521 DEBUG Processing 11/337 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,611 DEBUG Processing 191/510 atomic regions from SNP 57057 to 57657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,680 DEBUG Processing 432/525 atomic regions from SNP 129366 to 129966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,713 DEBUG Processing 12/337 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:27,823 DEBUG Processing 192/510 atomic regions from SNP 57357 to 57957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,877 DEBUG Processing 433/525 atomic regions from SNP 129666 to 130266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,914 DEBUG Processing 13/337 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,038 DEBUG Processing 193/510 atomic regions from SNP 57657 to 58257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,084 DEBUG Processing 434/525 atomic regions from SNP 129966 to 130566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,109 DEBUG Processing 14/337 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,251 DEBUG Processing 194/510 atomic regions from SNP 57957 to 58557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,292 DEBUG Processing 435/525 atomic regions from SNP 130266 to 130866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,319 DEBUG Processing 15/337 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,468 DEBUG Processing 195/510 atomic regions from SNP 58257 to 58857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,532 DEBUG Processing 436/525 atomic regions from SNP 130566 to 131166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,564 DEBUG Processing 16/337 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,710 DEBUG Processing 196/510 atomic regions from SNP 58557 to 59157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,791 DEBUG Processing 437/525 atomic regions from SNP 130866 to 131466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,832 DEBUG Processing 17/337 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:28,914 DEBUG Processing 197/510 atomic regions from SNP 58857 to 59457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,994 DEBUG Processing 438/525 atomic regions from SNP 131166 to 131766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,045 DEBUG Processing 18/337 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,102 DEBUG Processing 198/510 atomic regions from SNP 59157 to 59757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,193 DEBUG Processing 439/525 atomic regions from SNP 131466 to 132066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,249 DEBUG Processing 19/337 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,286 DEBUG Processing 199/510 atomic regions from SNP 59457 to 60057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,411 DEBUG Processing 440/525 atomic regions from SNP 131766 to 132366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,449 DEBUG Processing 20/337 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,465 DEBUG Processing 200/510 atomic regions from SNP 59757 to 60357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,675 DEBUG Processing 441/525 atomic regions from SNP 132066 to 132666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,694 DEBUG Processing 21/337 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,713 DEBUG Processing 201/510 atomic regions from SNP 60057 to 60657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,930 DEBUG Processing 442/525 atomic regions from SNP 132366 to 132966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,934 DEBUG Processing 22/337 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:29,993 DEBUG Processing 202/510 atomic regions from SNP 60357 to 60957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,205 DEBUG Processing 23/337 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,221 DEBUG Processing 443/525 atomic regions from SNP 132666 to 133266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,276 DEBUG Processing 203/510 atomic regions from SNP 60657 to 61257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,501 DEBUG Processing 444/525 atomic regions from SNP 132966 to 133566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,502 DEBUG Processing 24/337 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,564 DEBUG Processing 204/510 atomic regions from SNP 60957 to 61557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,791 DEBUG Processing 445/525 atomic regions from SNP 133266 to 133866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,795 DEBUG Processing 25/337 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:30,833 DEBUG Processing 205/510 atomic regions from SNP 61257 to 61857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,071 DEBUG Processing 446/525 atomic regions from SNP 133566 to 134166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,087 DEBUG Processing 26/337 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,117 DEBUG Processing 206/510 atomic regions from SNP 61557 to 62157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,357 DEBUG Processing 447/525 atomic regions from SNP 133866 to 134466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,364 DEBUG Processing 27/337 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,396 DEBUG Processing 207/510 atomic regions from SNP 61857 to 62457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,622 DEBUG Processing 28/337 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,628 DEBUG Processing 448/525 atomic regions from SNP 134166 to 134766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,664 DEBUG Processing 208/510 atomic regions from SNP 62157 to 62757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,874 DEBUG Processing 29/337 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:31,915 DEBUG Processing 449/525 atomic regions from SNP 134466 to 135066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,935 DEBUG Processing 209/510 atomic regions from SNP 62457 to 63057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,141 DEBUG Processing 30/337 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,188 DEBUG Processing 450/525 atomic regions from SNP 134766 to 135366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,199 DEBUG Processing 210/510 atomic regions from SNP 62757 to 63357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,410 DEBUG Processing 31/337 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,478 DEBUG Processing 451/525 atomic regions from SNP 135066 to 135666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,479 DEBUG Processing 211/510 atomic regions from SNP 63057 to 63657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,671 DEBUG Processing 32/337 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:32,765 DEBUG Processing 212/510 atomic regions from SNP 63357 to 63957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,780 DEBUG Processing 452/525 atomic regions from SNP 135366 to 135966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,970 DEBUG Processing 33/337 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,049 DEBUG Processing 213/510 atomic regions from SNP 63657 to 64257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,076 DEBUG Processing 453/525 atomic regions from SNP 135666 to 136266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,256 DEBUG Processing 34/337 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,318 DEBUG Processing 214/510 atomic regions from SNP 63957 to 64557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,331 DEBUG Processing 454/525 atomic regions from SNP 135966 to 136566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,516 DEBUG Processing 35/337 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,549 DEBUG Processing 215/510 atomic regions from SNP 64257 to 64857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,600 DEBUG Processing 455/525 atomic regions from SNP 136266 to 136866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,781 DEBUG Processing 36/337 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:33,806 DEBUG Processing 216/510 atomic regions from SNP 64557 to 65157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,885 DEBUG Processing 456/525 atomic regions from SNP 136566 to 137166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,048 DEBUG Processing 37/337 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,083 DEBUG Processing 217/510 atomic regions from SNP 64857 to 65457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,185 DEBUG Processing 457/525 atomic regions from SNP 136866 to 137466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,332 DEBUG Processing 38/337 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,368 DEBUG Processing 218/510 atomic regions from SNP 65157 to 65757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,483 DEBUG Processing 458/525 atomic regions from SNP 137166 to 137766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,627 DEBUG Processing 39/337 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:34,651 DEBUG Processing 219/510 atomic regions from SNP 65457 to 66057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,760 DEBUG Processing 459/525 atomic regions from SNP 137466 to 138066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,918 DEBUG Processing 220/510 atomic regions from SNP 65757 to 66357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,929 DEBUG Processing 40/337 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,021 DEBUG Processing 460/525 atomic regions from SNP 137766 to 138366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,156 DEBUG Processing 221/510 atomic regions from SNP 66057 to 66657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,190 DEBUG Processing 41/337 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,299 DEBUG Processing 461/525 atomic regions from SNP 138066 to 138666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,391 DEBUG Processing 222/510 atomic regions from SNP 66357 to 66957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,400 DEBUG Processing 42/337 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,560 DEBUG Processing 462/525 atomic regions from SNP 138366 to 138966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,657 DEBUG Processing 43/337 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,662 DEBUG Processing 223/510 atomic regions from SNP 66657 to 67257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,832 DEBUG Processing 463/525 atomic regions from SNP 138666 to 139266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,917 DEBUG Processing 44/337 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:35,918 DEBUG Processing 224/510 atomic regions from SNP 66957 to 67557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,129 DEBUG Processing 464/525 atomic regions from SNP 138966 to 139566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,177 DEBUG Processing 45/337 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,180 DEBUG Processing 225/510 atomic regions from SNP 67257 to 67857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,422 DEBUG Processing 465/525 atomic regions from SNP 139266 to 139866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,429 DEBUG Processing 46/337 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,452 DEBUG Processing 226/510 atomic regions from SNP 67557 to 68157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,707 DEBUG Processing 47/337 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:36,734 DEBUG Processing 227/510 atomic regions from SNP 67857 to 68457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,735 DEBUG Processing 466/525 atomic regions from SNP 139566 to 140166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,950 DEBUG Processing 48/337 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,016 DEBUG Processing 228/510 atomic regions from SNP 68157 to 68757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,016 DEBUG Processing 467/525 atomic regions from SNP 139866 to 140466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,136 DEBUG Processing 49/337 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,261 DEBUG Processing 229/510 atomic regions from SNP 68457 to 69057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,285 DEBUG Processing 468/525 atomic regions from SNP 140166 to 140766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,355 DEBUG Processing 50/337 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,444 DEBUG Processing 230/510 atomic regions from SNP 68757 to 69357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,523 DEBUG Processing 469/525 atomic regions from SNP 140466 to 141066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,591 DEBUG Processing 51/337 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,672 DEBUG Processing 231/510 atomic regions from SNP 69057 to 69657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,786 DEBUG Processing 470/525 atomic regions from SNP 140766 to 141366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,791 DEBUG Processing 52/337 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:37,879 DEBUG Processing 232/510 atomic regions from SNP 69357 to 69957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,022 DEBUG Processing 53/337 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,043 DEBUG Processing 471/525 atomic regions from SNP 141066 to 141666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,131 DEBUG Processing 233/510 atomic regions from SNP 69657 to 70257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,244 DEBUG Processing 54/337 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,318 DEBUG Processing 472/525 atomic regions from SNP 141366 to 141966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,397 DEBUG Processing 234/510 atomic regions from SNP 69957 to 70557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,488 DEBUG Processing 55/337 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,594 DEBUG Processing 473/525 atomic regions from SNP 141666 to 142266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,656 DEBUG Processing 235/510 atomic regions from SNP 70257 to 70857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,717 DEBUG Processing 56/337 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:38,801 DEBUG Processing 474/525 atomic regions from SNP 141966 to 142566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,843 DEBUG Processing 236/510 atomic regions from SNP 70557 to 71157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,903 DEBUG Processing 57/337 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,072 DEBUG Processing 475/525 atomic regions from SNP 142266 to 142866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,094 DEBUG Processing 237/510 atomic regions from SNP 70857 to 71457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,142 DEBUG Processing 58/337 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,327 DEBUG Processing 476/525 atomic regions from SNP 142566 to 143166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,339 DEBUG Processing 238/510 atomic regions from SNP 71157 to 71757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,395 DEBUG Processing 59/337 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,589 DEBUG Processing 239/510 atomic regions from SNP 71457 to 72057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,616 DEBUG Processing 477/525 atomic regions from SNP 142866 to 143466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,648 DEBUG Processing 60/337 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,835 DEBUG Processing 240/510 atomic regions from SNP 71757 to 72357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,888 DEBUG Processing 61/337 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:39,905 DEBUG Processing 478/525 atomic regions from SNP 143166 to 143766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,088 DEBUG Processing 241/510 atomic regions from SNP 72057 to 72657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,129 DEBUG Processing 62/337 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,197 DEBUG Processing 479/525 atomic regions from SNP 143466 to 144066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,321 DEBUG Processing 242/510 atomic regions from SNP 72357 to 72957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,345 DEBUG Processing 63/337 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,410 DEBUG Processing 480/525 atomic regions from SNP 143766 to 144366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,501 DEBUG Processing 243/510 atomic regions from SNP 72657 to 73257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,516 DEBUG Processing 64/337 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,614 DEBUG Processing 481/525 atomic regions from SNP 144066 to 144666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,727 DEBUG Processing 244/510 atomic regions from SNP 72957 to 73557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,732 DEBUG Processing 65/337 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,868 DEBUG Processing 482/525 atomic regions from SNP 144366 to 144966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,968 DEBUG Processing 66/337 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:40,971 DEBUG Processing 245/510 atomic regions from SNP 73257 to 73857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,134 DEBUG Processing 483/525 atomic regions from SNP 144666 to 145266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,210 DEBUG Processing 67/337 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,232 DEBUG Processing 246/510 atomic regions from SNP 73557 to 74157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,394 DEBUG Processing 484/525 atomic regions from SNP 144966 to 145566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,394 DEBUG Processing 68/337 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,421 DEBUG Processing 247/510 atomic regions from SNP 73857 to 74457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,616 DEBUG Processing 69/337 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,650 DEBUG Processing 485/525 atomic regions from SNP 145266 to 145866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,657 DEBUG Processing 248/510 atomic regions from SNP 74157 to 74757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,832 DEBUG Processing 70/337 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:41,902 DEBUG Processing 249/510 atomic regions from SNP 74457 to 75057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,906 DEBUG Processing 486/525 atomic regions from SNP 145566 to 146166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,053 DEBUG Processing 71/337 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,157 DEBUG Processing 250/510 atomic regions from SNP 74757 to 75357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,173 DEBUG Processing 487/525 atomic regions from SNP 145866 to 146466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,292 DEBUG Processing 72/337 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,414 DEBUG Processing 251/510 atomic regions from SNP 75057 to 75657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,440 DEBUG Processing 488/525 atomic regions from SNP 146166 to 146766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,546 DEBUG Processing 73/337 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,695 DEBUG Processing 252/510 atomic regions from SNP 75357 to 75957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,712 DEBUG Processing 489/525 atomic regions from SNP 146466 to 147066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,797 DEBUG Processing 74/337 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:42,983 DEBUG Processing 490/525 atomic regions from SNP 146766 to 147366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,002 DEBUG Processing 253/510 atomic regions from SNP 75657 to 76257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,056 DEBUG Processing 75/337 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,295 DEBUG Processing 491/525 atomic regions from SNP 147066 to 147666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,320 DEBUG Processing 254/510 atomic regions from SNP 75957 to 76557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,329 DEBUG Processing 76/337 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,563 DEBUG Processing 492/525 atomic regions from SNP 147366 to 147966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,568 DEBUG Processing 77/337 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,586 DEBUG Processing 255/510 atomic regions from SNP 76257 to 76857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,812 DEBUG Processing 78/337 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:43,833 DEBUG Processing 493/525 atomic regions from SNP 147666 to 148266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,875 DEBUG Processing 256/510 atomic regions from SNP 76557 to 77157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,097 DEBUG Processing 79/337 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,131 DEBUG Processing 494/525 atomic regions from SNP 147966 to 148566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,212 DEBUG Processing 257/510 atomic regions from SNP 76857 to 77457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,389 DEBUG Processing 80/337 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,449 DEBUG Processing 495/525 atomic regions from SNP 148266 to 148866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,515 DEBUG Processing 258/510 atomic regions from SNP 77157 to 77757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,654 DEBUG Processing 81/337 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:44,737 DEBUG Processing 496/525 atomic regions from SNP 148566 to 149166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,794 DEBUG Processing 259/510 atomic regions from SNP 77457 to 78057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,910 DEBUG Processing 82/337 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,008 DEBUG Processing 497/525 atomic regions from SNP 148866 to 149466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,063 DEBUG Processing 260/510 atomic regions from SNP 77757 to 78357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,165 DEBUG Processing 83/337 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,295 DEBUG Processing 498/525 atomic regions from SNP 149166 to 149766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,341 DEBUG Processing 261/510 atomic regions from SNP 78057 to 78657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,434 DEBUG Processing 84/337 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,566 DEBUG Processing 499/525 atomic regions from SNP 149466 to 150066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,576 DEBUG Processing 262/510 atomic regions from SNP 78357 to 78957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,600 DEBUG Processing 85/337 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,804 DEBUG Processing 86/337 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:45,822 DEBUG Processing 500/525 atomic regions from SNP 149766 to 150366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,828 DEBUG Processing 263/510 atomic regions from SNP 78657 to 79257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,019 DEBUG Processing 87/337 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,084 DEBUG Processing 264/510 atomic regions from SNP 78957 to 79557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,084 DEBUG Processing 501/525 atomic regions from SNP 150066 to 150666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,223 DEBUG Processing 88/337 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,346 DEBUG Processing 265/510 atomic regions from SNP 79257 to 79857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,354 DEBUG Processing 502/525 atomic regions from SNP 150366 to 150966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,414 DEBUG Processing 89/337 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,526 DEBUG Processing 266/510 atomic regions from SNP 79557 to 80157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,546 DEBUG Processing 503/525 atomic regions from SNP 150666 to 151266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,628 DEBUG Processing 90/337 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,735 DEBUG Processing 267/510 atomic regions from SNP 79857 to 80457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,763 DEBUG Processing 504/525 atomic regions from SNP 150966 to 151566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,801 DEBUG Processing 91/337 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:46,918 DEBUG Processing 268/510 atomic regions from SNP 80157 to 80757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,964 DEBUG Processing 505/525 atomic regions from SNP 151266 to 151866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,968 DEBUG Processing 92/337 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,115 DEBUG Processing 269/510 atomic regions from SNP 80457 to 81057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,140 DEBUG Processing 93/337 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,165 DEBUG Processing 506/525 atomic regions from SNP 151566 to 152166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,314 DEBUG Processing 270/510 atomic regions from SNP 80757 to 81357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,347 DEBUG Processing 94/337 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,400 DEBUG Processing 507/525 atomic regions from SNP 151866 to 152466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,508 DEBUG Processing 271/510 atomic regions from SNP 81057 to 81657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,548 DEBUG Processing 95/337 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,641 DEBUG Processing 508/525 atomic regions from SNP 152166 to 152766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,745 DEBUG Processing 272/510 atomic regions from SNP 81357 to 81957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,769 DEBUG Processing 96/337 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:47,887 DEBUG Processing 509/525 atomic regions from SNP 152466 to 153066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,004 DEBUG Processing 97/337 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,008 DEBUG Processing 273/510 atomic regions from SNP 81657 to 82257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,083 DEBUG Processing 510/525 atomic regions from SNP 152766 to 153366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,192 DEBUG Processing 98/337 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,215 DEBUG Processing 274/510 atomic regions from SNP 81957 to 82557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,285 DEBUG Processing 511/525 atomic regions from SNP 153066 to 153666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,350 DEBUG Processing 99/337 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,393 DEBUG Processing 275/510 atomic regions from SNP 82257 to 82857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,478 DEBUG Processing 512/525 atomic regions from SNP 153366 to 153966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,507 DEBUG Processing 100/337 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,568 DEBUG Processing 276/510 atomic regions from SNP 82557 to 83157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,666 DEBUG Processing 513/525 atomic regions from SNP 153666 to 154266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,668 DEBUG Processing 101/337 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,745 DEBUG Processing 277/510 atomic regions from SNP 82857 to 83457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,827 DEBUG Processing 102/337 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:48,852 DEBUG Processing 514/525 atomic regions from SNP 153966 to 154566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,920 DEBUG Processing 278/510 atomic regions from SNP 83157 to 83757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,981 DEBUG Processing 103/337 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,034 DEBUG Processing 515/525 atomic regions from SNP 154266 to 154866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,095 DEBUG Processing 279/510 atomic regions from SNP 83457 to 84057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,136 DEBUG Processing 104/337 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,216 DEBUG Processing 516/525 atomic regions from SNP 154566 to 155166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,275 DEBUG Processing 280/510 atomic regions from SNP 83757 to 84357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,292 DEBUG Processing 105/337 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,403 DEBUG Processing 517/525 atomic regions from SNP 154866 to 155466 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,450 DEBUG Processing 106/337 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,454 DEBUG Processing 281/510 atomic regions from SNP 84057 to 84657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,590 DEBUG Processing 518/525 atomic regions from SNP 155166 to 155766 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,612 DEBUG Processing 107/337 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,633 DEBUG Processing 282/510 atomic regions from SNP 84357 to 84957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,776 DEBUG Processing 108/337 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,777 DEBUG Processing 519/525 atomic regions from SNP 155466 to 156066 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,811 DEBUG Processing 283/510 atomic regions from SNP 84657 to 85257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,935 DEBUG Processing 109/337 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,962 DEBUG Processing 520/525 atomic regions from SNP 155766 to 156366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,986 DEBUG Processing 284/510 atomic regions from SNP 84957 to 85557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,093 DEBUG Processing 110/337 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,146 DEBUG Processing 521/525 atomic regions from SNP 156066 to 156666 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,161 DEBUG Processing 285/510 atomic regions from SNP 85257 to 85857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,249 DEBUG Processing 111/337 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,334 DEBUG Processing 522/525 atomic regions from SNP 156366 to 156966 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,335 DEBUG Processing 286/510 atomic regions from SNP 85557 to 86157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,406 DEBUG Processing 112/337 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,509 DEBUG Processing 287/510 atomic regions from SNP 85857 to 86457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,519 DEBUG Processing 523/525 atomic regions from SNP 156666 to 157266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,561 DEBUG Processing 113/337 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,685 DEBUG Processing 288/510 atomic regions from SNP 86157 to 86757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,707 DEBUG Processing 524/525 atomic regions from SNP 156966 to 157566 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,745 DEBUG Processing 114/337 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,859 DEBUG Processing 289/510 atomic regions from SNP 86457 to 87057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,902 DEBUG Processing 525/525 atomic regions from SNP 157266 to 157866 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,914 DEBUG Processing 115/337 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,018 DEBUG Unique SNPs positions in subchromosome 1: 157867 2025-01-31 09:58:51,031 DEBUG Processing 290/510 atomic regions from SNP 86757 to 87357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,076 DEBUG Processing 116/337 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,202 DEBUG Processing 291/510 atomic regions from SNP 87057 to 87657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,228 DEBUG Processing 117/337 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,376 DEBUG Processing 292/510 atomic regions from SNP 87357 to 87957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,382 DEBUG Processing 118/337 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,541 DEBUG Processing 119/337 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,551 DEBUG Processing 293/510 atomic regions from SNP 87657 to 88257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,699 DEBUG Processing 120/337 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,727 DEBUG Processing 294/510 atomic regions from SNP 87957 to 88557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:51,855 DEBUG Processing 121/337 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,903 DEBUG Processing 295/510 atomic regions from SNP 88257 to 88857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,026 DEBUG Processing 122/337 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,076 DEBUG Processing 296/510 atomic regions from SNP 88557 to 89157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,192 DEBUG Processing 123/337 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,246 DEBUG Processing 297/510 atomic regions from SNP 88857 to 89457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,382 DEBUG Processing 124/337 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,463 DEBUG Processing 298/510 atomic regions from SNP 89157 to 89757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,584 DEBUG Processing 125/337 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,708 DEBUG Processing 299/510 atomic regions from SNP 89457 to 90057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,766 DEBUG Processing 126/337 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,893 DEBUG Processing 300/510 atomic regions from SNP 89757 to 90357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:52,930 DEBUG Processing 127/337 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,069 DEBUG Processing 301/510 atomic regions from SNP 90057 to 90657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,085 DEBUG Processing 128/337 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,254 DEBUG Processing 302/510 atomic regions from SNP 90357 to 90957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,260 DEBUG Processing 129/337 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,434 DEBUG Processing 130/337 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,452 DEBUG Processing 303/510 atomic regions from SNP 90657 to 91257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,588 DEBUG Processing 131/337 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,625 DEBUG Processing 304/510 atomic regions from SNP 90957 to 91557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:53,775 DEBUG Processing 132/337 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,822 DEBUG Processing 305/510 atomic regions from SNP 91257 to 91857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,004 DEBUG Processing 133/337 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,053 DEBUG Processing 306/510 atomic regions from SNP 91557 to 92157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,196 DEBUG Processing 134/337 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,257 DEBUG Processing 307/510 atomic regions from SNP 91857 to 92457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,397 DEBUG Processing 135/337 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,482 DEBUG Processing 308/510 atomic regions from SNP 92157 to 92757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,589 DEBUG Processing 136/337 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,738 DEBUG Processing 309/510 atomic regions from SNP 92457 to 93057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,775 DEBUG Processing 137/337 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,916 DEBUG Processing 310/510 atomic regions from SNP 92757 to 93357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:54,934 DEBUG Processing 138/337 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,087 DEBUG Processing 139/337 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,097 DEBUG Processing 311/510 atomic regions from SNP 93057 to 93657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,241 DEBUG Processing 140/337 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,292 DEBUG Processing 312/510 atomic regions from SNP 93357 to 93957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,394 DEBUG Processing 141/337 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,476 DEBUG Processing 313/510 atomic regions from SNP 93657 to 94257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,548 DEBUG Processing 142/337 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,650 DEBUG Processing 314/510 atomic regions from SNP 93957 to 94557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,700 DEBUG Processing 143/337 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,824 DEBUG Processing 315/510 atomic regions from SNP 94257 to 94857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,854 DEBUG Processing 144/337 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,998 DEBUG Processing 316/510 atomic regions from SNP 94557 to 95157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,007 DEBUG Processing 145/337 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,161 DEBUG Processing 146/337 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,171 DEBUG Processing 317/510 atomic regions from SNP 94857 to 95457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,316 DEBUG Processing 147/337 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,344 DEBUG Processing 318/510 atomic regions from SNP 95157 to 95757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,469 DEBUG Processing 148/337 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,519 DEBUG Processing 319/510 atomic regions from SNP 95457 to 96057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,632 DEBUG Processing 149/337 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,695 DEBUG Processing 320/510 atomic regions from SNP 95757 to 96357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,798 DEBUG Processing 150/337 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,870 DEBUG Processing 321/510 atomic regions from SNP 96057 to 96657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,958 DEBUG Processing 151/337 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,043 DEBUG Processing 322/510 atomic regions from SNP 96357 to 96957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,114 DEBUG Processing 152/337 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,216 DEBUG Processing 323/510 atomic regions from SNP 96657 to 97257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,270 DEBUG Processing 153/337 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,387 DEBUG Processing 324/510 atomic regions from SNP 96957 to 97557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,421 DEBUG Processing 154/337 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,559 DEBUG Processing 325/510 atomic regions from SNP 97257 to 97857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,574 DEBUG Processing 155/337 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,730 DEBUG Processing 156/337 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,732 DEBUG Processing 326/510 atomic regions from SNP 97557 to 98157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,882 DEBUG Processing 157/337 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,906 DEBUG Processing 327/510 atomic regions from SNP 97857 to 98457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,036 DEBUG Processing 158/337 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,079 DEBUG Processing 328/510 atomic regions from SNP 98157 to 98757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,188 DEBUG Processing 159/337 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,250 DEBUG Processing 329/510 atomic regions from SNP 98457 to 99057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,341 DEBUG Processing 160/337 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,426 DEBUG Processing 330/510 atomic regions from SNP 98757 to 99357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,496 DEBUG Processing 161/337 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,601 DEBUG Processing 331/510 atomic regions from SNP 99057 to 99657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,654 DEBUG Processing 162/337 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,774 DEBUG Processing 332/510 atomic regions from SNP 99357 to 99957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,808 DEBUG Processing 163/337 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,947 DEBUG Processing 333/510 atomic regions from SNP 99657 to 100257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,961 DEBUG Processing 164/337 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,116 DEBUG Processing 165/337 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,153 DEBUG Processing 334/510 atomic regions from SNP 99957 to 100557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,270 DEBUG Processing 166/337 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,352 DEBUG Processing 335/510 atomic regions from SNP 100257 to 100857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,421 DEBUG Processing 167/337 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,555 DEBUG Processing 336/510 atomic regions from SNP 100557 to 101157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,602 DEBUG Processing 168/337 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,745 DEBUG Processing 337/510 atomic regions from SNP 100857 to 101457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,773 DEBUG Processing 169/337 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,934 DEBUG Processing 170/337 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,935 DEBUG Processing 338/510 atomic regions from SNP 101157 to 101757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,027 DEBUG Subchromosome time: 141.5448824055493, subchromosome SNPs: 157867 2025-01-31 09:59:00,027 DEBUG Estimated BADs: [1.47, 0.49, 5.89, 2.95, 14.73, 4.42, 0.37, 1.47, 4.42, 0.74, 7.37, 0.49, 1.47, 0.25, 2.95, 0.25] SNP counts: [20850, 11266, 11042, 8027, 276, 5437, 11665, 2190, 5732, 12553, 2679, 8642, 33590, 2401, 12021, 9496] SNP IDs counts: [20850, 11266, 11042, 8027, 276, 5437, 11665, 2190, 5732, 12553, 2679, 8642, 33590, 2401, 12021, 9496] Critical gap: 530965bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.94Mbp, 23.53Mbp, 29.40Mbp, 33.82Mbp, 33.97Mbp, 37.09Mbp, 44.37Mbp, 45.55Mbp, 48.60Mbp, 55.94Mbp, 57.35Mbp, 62.49Mbp, 81.19Mbp, 82.64Mbp, 89.09Mbp, 94.99Mbp] 2025-01-31 09:59:00,027 DEBUG chr17 time: 141.54532201960683 s 2025-01-31 09:59:00,089 DEBUG Processing 171/337 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,117 DEBUG chr17: Fitting background model for 16 segments 2025-01-31 09:59:00,126 DEBUG Processing 339/510 atomic regions from SNP 101457 to 102057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,244 DEBUG Processing 172/337 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,329 DEBUG Processing 340/510 atomic regions from SNP 101757 to 102357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,394 DEBUG Processing 173/337 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,535 DEBUG Processing 341/510 atomic regions from SNP 102057 to 102657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,547 DEBUG Processing 174/337 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,706 DEBUG Processing 175/337 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,737 DEBUG Processing 342/510 atomic regions from SNP 102357 to 102957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,862 DEBUG Processing 176/337 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,917 DEBUG Processing 343/510 atomic regions from SNP 102657 to 103257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,018 DEBUG Processing 177/337 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,097 DEBUG Processing 344/510 atomic regions from SNP 102957 to 103557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,179 DEBUG Processing 178/337 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,300 DEBUG Processing 345/510 atomic regions from SNP 103257 to 103857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,339 DEBUG Processing 179/337 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,514 DEBUG Processing 346/510 atomic regions from SNP 103557 to 104157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,557 DEBUG Processing 180/337 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,762 DEBUG Processing 347/510 atomic regions from SNP 103857 to 104457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,782 DEBUG Processing 181/337 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,029 DEBUG Processing 348/510 atomic regions from SNP 104157 to 104757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,029 DEBUG Processing 182/337 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,295 DEBUG Processing 183/337 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,311 DEBUG Processing 349/510 atomic regions from SNP 104457 to 105057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,468 DEBUG Processing 184/337 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,495 DEBUG Processing 350/510 atomic regions from SNP 104757 to 105357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,624 DEBUG Processing 185/337 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,670 DEBUG Processing 351/510 atomic regions from SNP 105057 to 105657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,780 DEBUG Processing 186/337 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,843 DEBUG Processing 352/510 atomic regions from SNP 105357 to 105957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,933 DEBUG Processing 187/337 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,024 DEBUG Processing 353/510 atomic regions from SNP 105657 to 106257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,090 DEBUG Processing 188/337 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,219 DEBUG Processing 354/510 atomic regions from SNP 105957 to 106557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,261 DEBUG Processing 189/337 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,388 DEBUG Processing 355/510 atomic regions from SNP 106257 to 106857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,417 DEBUG Processing 190/337 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,565 DEBUG Processing 356/510 atomic regions from SNP 106557 to 107157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,568 DEBUG Processing 191/337 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,777 DEBUG Processing 192/337 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,798 DEBUG Processing 357/510 atomic regions from SNP 106857 to 107457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,020 DEBUG Processing 193/337 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,073 DEBUG Processing 358/510 atomic regions from SNP 107157 to 107757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,270 DEBUG Processing 194/337 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,372 DEBUG Processing 359/510 atomic regions from SNP 107457 to 108057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,509 DEBUG Processing 195/337 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,603 DEBUG Processing 360/510 atomic regions from SNP 107757 to 108357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,732 DEBUG Processing 196/337 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,826 DEBUG Processing 361/510 atomic regions from SNP 108057 to 108657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,903 DEBUG Processing 197/337 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,062 DEBUG Processing 362/510 atomic regions from SNP 108357 to 108957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,106 DEBUG Processing 198/337 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,279 DEBUG Processing 363/510 atomic regions from SNP 108657 to 109257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,340 DEBUG Processing 199/337 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,498 DEBUG Processing 364/510 atomic regions from SNP 108957 to 109557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,583 DEBUG Processing 200/337 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,706 DEBUG Processing 365/510 atomic regions from SNP 109257 to 109857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,811 DEBUG Processing 201/337 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,897 DEBUG Processing 366/510 atomic regions from SNP 109557 to 110157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,015 DEBUG Processing 202/337 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,130 DEBUG Processing 367/510 atomic regions from SNP 109857 to 110457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,206 DEBUG Processing 203/337 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,372 DEBUG Processing 368/510 atomic regions from SNP 110157 to 110757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,426 DEBUG Processing 204/337 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,551 DEBUG Processing 369/510 atomic regions from SNP 110457 to 111057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,593 DEBUG Processing 205/337 atomic regions from SNP 61404 to 62005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,728 DEBUG Processing 370/510 atomic regions from SNP 110757 to 111357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,757 DEBUG Processing 206/337 atomic regions from SNP 61705 to 62306 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,928 DEBUG Processing 371/510 atomic regions from SNP 111057 to 111657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,948 DEBUG Processing 207/337 atomic regions from SNP 62006 to 62607 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,103 DEBUG Processing 372/510 atomic regions from SNP 111357 to 111957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,114 DEBUG Processing 208/337 atomic regions from SNP 62307 to 62908 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,269 DEBUG Processing 209/337 atomic regions from SNP 62608 to 63209 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,277 DEBUG Processing 373/510 atomic regions from SNP 111657 to 112257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,426 DEBUG Processing 210/337 atomic regions from SNP 62909 to 63510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,452 DEBUG Processing 374/510 atomic regions from SNP 111957 to 112557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,584 DEBUG Processing 211/337 atomic regions from SNP 63210 to 63810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,626 DEBUG Processing 375/510 atomic regions from SNP 112257 to 112857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,752 DEBUG Processing 212/337 atomic regions from SNP 63510 to 64110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,827 DEBUG Processing 376/510 atomic regions from SNP 112557 to 113157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,914 DEBUG Processing 213/337 atomic regions from SNP 63810 to 64410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,028 DEBUG Processing 377/510 atomic regions from SNP 112857 to 113457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,074 DEBUG Processing 214/337 atomic regions from SNP 64110 to 64710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,223 DEBUG Processing 378/510 atomic regions from SNP 113157 to 113757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,242 DEBUG Processing 215/337 atomic regions from SNP 64410 to 65010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,410 DEBUG Processing 216/337 atomic regions from SNP 64710 to 65310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,419 DEBUG Processing 379/510 atomic regions from SNP 113457 to 114057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,574 DEBUG Processing 217/337 atomic regions from SNP 65010 to 65610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,592 DEBUG Processing 380/510 atomic regions from SNP 113757 to 114357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,732 DEBUG Processing 218/337 atomic regions from SNP 65310 to 65910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,765 DEBUG Processing 381/510 atomic regions from SNP 114057 to 114657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,895 DEBUG Processing 219/337 atomic regions from SNP 65610 to 66210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,937 DEBUG Processing 382/510 atomic regions from SNP 114357 to 114957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,054 DEBUG Processing 220/337 atomic regions from SNP 65910 to 66510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,109 DEBUG Processing 383/510 atomic regions from SNP 114657 to 115257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,209 DEBUG Processing 221/337 atomic regions from SNP 66210 to 66810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,283 DEBUG Processing 384/510 atomic regions from SNP 114957 to 115557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,389 DEBUG Processing 222/337 atomic regions from SNP 66510 to 67110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,454 DEBUG Processing 385/510 atomic regions from SNP 115257 to 115857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,571 DEBUG Processing 223/337 atomic regions from SNP 66810 to 67410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,628 DEBUG Processing 386/510 atomic regions from SNP 115557 to 116157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,756 DEBUG Processing 224/337 atomic regions from SNP 67110 to 67710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,802 DEBUG Processing 387/510 atomic regions from SNP 115857 to 116457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,929 DEBUG Processing 225/337 atomic regions from SNP 67410 to 68010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,976 DEBUG Processing 388/510 atomic regions from SNP 116157 to 116757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,095 DEBUG Processing 226/337 atomic regions from SNP 67710 to 68310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,155 DEBUG Processing 389/510 atomic regions from SNP 116457 to 117057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,260 DEBUG Processing 227/337 atomic regions from SNP 68010 to 68610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,327 DEBUG Processing 390/510 atomic regions from SNP 116757 to 117357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,419 DEBUG Processing 228/337 atomic regions from SNP 68310 to 68910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,501 DEBUG Processing 391/510 atomic regions from SNP 117057 to 117657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,577 DEBUG Processing 229/337 atomic regions from SNP 68610 to 69210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,674 DEBUG Processing 392/510 atomic regions from SNP 117357 to 117957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,732 DEBUG Processing 230/337 atomic regions from SNP 68910 to 69510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,848 DEBUG Processing 393/510 atomic regions from SNP 117657 to 118257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,887 DEBUG Processing 231/337 atomic regions from SNP 69210 to 69810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,023 DEBUG Processing 394/510 atomic regions from SNP 117957 to 118557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,074 DEBUG Processing 232/337 atomic regions from SNP 69510 to 70110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,211 DEBUG Processing 395/510 atomic regions from SNP 118257 to 118857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,257 DEBUG Processing 233/337 atomic regions from SNP 69810 to 70410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,414 DEBUG Processing 396/510 atomic regions from SNP 118557 to 119157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,435 DEBUG Processing 234/337 atomic regions from SNP 70110 to 70710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,588 DEBUG Processing 397/510 atomic regions from SNP 118857 to 119457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,598 DEBUG Processing 235/337 atomic regions from SNP 70410 to 71010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,761 DEBUG Processing 236/337 atomic regions from SNP 70710 to 71310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,763 DEBUG Processing 398/510 atomic regions from SNP 119157 to 119757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,942 DEBUG Processing 399/510 atomic regions from SNP 119457 to 120057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,959 DEBUG Processing 237/337 atomic regions from SNP 71010 to 71610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,116 DEBUG Processing 400/510 atomic regions from SNP 119757 to 120357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,151 DEBUG Processing 238/337 atomic regions from SNP 71310 to 71910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,300 DEBUG Processing 401/510 atomic regions from SNP 120057 to 120657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,341 DEBUG Processing 239/337 atomic regions from SNP 71610 to 72210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,493 DEBUG Processing 402/510 atomic regions from SNP 120357 to 120957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,519 DEBUG Processing 240/337 atomic regions from SNP 71910 to 72510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,704 DEBUG Processing 403/510 atomic regions from SNP 120657 to 121257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,743 DEBUG Processing 241/337 atomic regions from SNP 72210 to 72810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,006 DEBUG Processing 404/510 atomic regions from SNP 120957 to 121557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,073 DEBUG Processing 242/337 atomic regions from SNP 72510 to 73110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,297 DEBUG Processing 405/510 atomic regions from SNP 121257 to 121857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,376 DEBUG Processing 243/337 atomic regions from SNP 72810 to 73410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,566 DEBUG Processing 406/510 atomic regions from SNP 121557 to 122157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,656 DEBUG Processing 244/337 atomic regions from SNP 73110 to 73710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,842 DEBUG Processing 407/510 atomic regions from SNP 121857 to 122457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,959 DEBUG Processing 245/337 atomic regions from SNP 73410 to 74010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,117 DEBUG Processing 408/510 atomic regions from SNP 122157 to 122757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,265 DEBUG Processing 246/337 atomic regions from SNP 73710 to 74310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,332 DEBUG Processing 409/510 atomic regions from SNP 122457 to 123057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,452 DEBUG Processing 247/337 atomic regions from SNP 74010 to 74610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,527 DEBUG Processing 410/510 atomic regions from SNP 122757 to 123357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,656 DEBUG Processing 248/337 atomic regions from SNP 74310 to 74910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,708 DEBUG Processing 411/510 atomic regions from SNP 123057 to 123657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,835 DEBUG Processing 249/337 atomic regions from SNP 74610 to 75210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,888 DEBUG Processing 412/510 atomic regions from SNP 123357 to 123957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,051 DEBUG Processing 250/337 atomic regions from SNP 74910 to 75510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,069 DEBUG Processing 413/510 atomic regions from SNP 123657 to 124257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,239 DEBUG Processing 251/337 atomic regions from SNP 75210 to 75810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,249 DEBUG Processing 414/510 atomic regions from SNP 123957 to 124557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,415 DEBUG Processing 252/337 atomic regions from SNP 75510 to 76110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,421 DEBUG Processing 415/510 atomic regions from SNP 124257 to 124857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,591 DEBUG Processing 253/337 atomic regions from SNP 75810 to 76410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,593 DEBUG Processing 416/510 atomic regions from SNP 124557 to 125157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,771 DEBUG Processing 417/510 atomic regions from SNP 124857 to 125457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,780 DEBUG Processing 254/337 atomic regions from SNP 76110 to 76710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,965 DEBUG Processing 418/510 atomic regions from SNP 125157 to 125757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,971 DEBUG Processing 255/337 atomic regions from SNP 76410 to 77010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,211 DEBUG Processing 419/510 atomic regions from SNP 125457 to 126057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,216 DEBUG Processing 256/337 atomic regions from SNP 76710 to 77310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,456 DEBUG Processing 257/337 atomic regions from SNP 77010 to 77610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,476 DEBUG Processing 420/510 atomic regions from SNP 125757 to 126357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,723 DEBUG Processing 258/337 atomic regions from SNP 77310 to 77910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,757 DEBUG Processing 421/510 atomic regions from SNP 126057 to 126657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,003 DEBUG Processing 259/337 atomic regions from SNP 77610 to 78210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,056 DEBUG Processing 422/510 atomic regions from SNP 126357 to 126957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,279 DEBUG Processing 260/337 atomic regions from SNP 77910 to 78510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,339 DEBUG Processing 423/510 atomic regions from SNP 126657 to 127257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,541 DEBUG Processing 261/337 atomic regions from SNP 78210 to 78810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,629 DEBUG Processing 424/510 atomic regions from SNP 126957 to 127557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,731 DEBUG Processing 262/337 atomic regions from SNP 78510 to 79110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,841 DEBUG Processing 425/510 atomic regions from SNP 127257 to 127857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,910 DEBUG Processing 263/337 atomic regions from SNP 78810 to 79410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,026 DEBUG Processing 426/510 atomic regions from SNP 127557 to 128157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,082 DEBUG Processing 264/337 atomic regions from SNP 79110 to 79710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,247 DEBUG Processing 427/510 atomic regions from SNP 127857 to 128457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,324 DEBUG Processing 265/337 atomic regions from SNP 79410 to 80010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,436 DEBUG Processing 428/510 atomic regions from SNP 128157 to 128757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,568 DEBUG Processing 266/337 atomic regions from SNP 79710 to 80310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,662 DEBUG Processing 429/510 atomic regions from SNP 128457 to 129057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,777 DEBUG Processing 267/337 atomic regions from SNP 80010 to 80610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,937 DEBUG Processing 430/510 atomic regions from SNP 128757 to 129357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,009 DEBUG Processing 268/337 atomic regions from SNP 80310 to 80910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,176 DEBUG Processing 431/510 atomic regions from SNP 129057 to 129657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,206 DEBUG Processing 269/337 atomic regions from SNP 80610 to 81210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,423 DEBUG Processing 432/510 atomic regions from SNP 129357 to 129957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,452 DEBUG Processing 270/337 atomic regions from SNP 80910 to 81510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,658 DEBUG Processing 433/510 atomic regions from SNP 129657 to 130257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,697 DEBUG Processing 271/337 atomic regions from SNP 81210 to 81810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,902 DEBUG Processing 434/510 atomic regions from SNP 129957 to 130557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,907 DEBUG Processing 272/337 atomic regions from SNP 81510 to 82110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,085 DEBUG Processing 273/337 atomic regions from SNP 81810 to 82410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,110 DEBUG Processing 435/510 atomic regions from SNP 130257 to 130857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,318 DEBUG Processing 274/337 atomic regions from SNP 82110 to 82710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,360 DEBUG Processing 436/510 atomic regions from SNP 130557 to 131157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,552 DEBUG Processing 275/337 atomic regions from SNP 82410 to 83010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,603 DEBUG Processing 437/510 atomic regions from SNP 130857 to 131457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,751 DEBUG Processing 276/337 atomic regions from SNP 82710 to 83310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,855 DEBUG Processing 438/510 atomic regions from SNP 131157 to 131757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,939 DEBUG Processing 277/337 atomic regions from SNP 83010 to 83610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,071 DEBUG Processing 439/510 atomic regions from SNP 131457 to 132057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,116 DEBUG Processing 278/337 atomic regions from SNP 83310 to 83910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,265 DEBUG Processing 440/510 atomic regions from SNP 131757 to 132357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,295 DEBUG Processing 279/337 atomic regions from SNP 83610 to 84210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,469 DEBUG Processing 441/510 atomic regions from SNP 132057 to 132657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,475 DEBUG Processing 280/337 atomic regions from SNP 83910 to 84510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,654 DEBUG Processing 281/337 atomic regions from SNP 84210 to 84810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,656 DEBUG Processing 442/510 atomic regions from SNP 132357 to 132957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,824 DEBUG Processing 282/337 atomic regions from SNP 84510 to 85110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,840 DEBUG Processing 443/510 atomic regions from SNP 132657 to 133257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,998 DEBUG Processing 283/337 atomic regions from SNP 84810 to 85410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,025 DEBUG Processing 444/510 atomic regions from SNP 132957 to 133557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,203 DEBUG Processing 284/337 atomic regions from SNP 85110 to 85710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,230 DEBUG Processing 445/510 atomic regions from SNP 133257 to 133857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,447 DEBUG Processing 285/337 atomic regions from SNP 85410 to 86010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,484 DEBUG Processing 446/510 atomic regions from SNP 133557 to 134157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,616 DEBUG Processing 286/337 atomic regions from SNP 85710 to 86310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,675 DEBUG Processing 447/510 atomic regions from SNP 133857 to 134457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,787 DEBUG Processing 287/337 atomic regions from SNP 86010 to 86610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,856 DEBUG Processing 448/510 atomic regions from SNP 134157 to 134757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,957 DEBUG Processing 288/337 atomic regions from SNP 86310 to 86910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,040 DEBUG Processing 449/510 atomic regions from SNP 134457 to 135057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,131 DEBUG Processing 289/337 atomic regions from SNP 86610 to 87210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,226 DEBUG Processing 450/510 atomic regions from SNP 134757 to 135357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,327 DEBUG Processing 290/337 atomic regions from SNP 86910 to 87510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,413 DEBUG Processing 451/510 atomic regions from SNP 135057 to 135657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,515 DEBUG Processing 291/337 atomic regions from SNP 87210 to 87810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,613 DEBUG Processing 452/510 atomic regions from SNP 135357 to 135957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,677 DEBUG Processing 292/337 atomic regions from SNP 87510 to 88110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,829 DEBUG Processing 453/510 atomic regions from SNP 135657 to 136257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,862 DEBUG Processing 293/337 atomic regions from SNP 87810 to 88410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,021 DEBUG Processing 454/510 atomic regions from SNP 135957 to 136557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,062 DEBUG Processing 294/337 atomic regions from SNP 88110 to 88710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,219 DEBUG Processing 455/510 atomic regions from SNP 136257 to 136857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,259 DEBUG Processing 295/337 atomic regions from SNP 88410 to 89010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,467 DEBUG Processing 456/510 atomic regions from SNP 136557 to 137157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,498 DEBUG Processing 296/337 atomic regions from SNP 88710 to 89310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,674 DEBUG Processing 457/510 atomic regions from SNP 136857 to 137457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,716 DEBUG Processing 297/337 atomic regions from SNP 89010 to 89610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,918 DEBUG Processing 458/510 atomic regions from SNP 137157 to 137757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,944 DEBUG Processing 298/337 atomic regions from SNP 89310 to 89910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,167 DEBUG Processing 459/510 atomic regions from SNP 137457 to 138057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,184 DEBUG Processing 299/337 atomic regions from SNP 89610 to 90210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,420 DEBUG Processing 460/510 atomic regions from SNP 137757 to 138357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,434 DEBUG Processing 300/337 atomic regions from SNP 89910 to 90510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,618 DEBUG Processing 461/510 atomic regions from SNP 138057 to 138657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,630 DEBUG Processing 301/337 atomic regions from SNP 90210 to 90810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,833 DEBUG Processing 462/510 atomic regions from SNP 138357 to 138957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,840 DEBUG Processing 302/337 atomic regions from SNP 90510 to 91110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,057 DEBUG Processing 463/510 atomic regions from SNP 138657 to 139257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,063 DEBUG Processing 303/337 atomic regions from SNP 90810 to 91410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,306 DEBUG Processing 304/337 atomic regions from SNP 91110 to 91710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,308 DEBUG Processing 464/510 atomic regions from SNP 138957 to 139557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,543 DEBUG Processing 305/337 atomic regions from SNP 91410 to 92010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,553 DEBUG Processing 465/510 atomic regions from SNP 139257 to 139857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,803 DEBUG Processing 306/337 atomic regions from SNP 91710 to 92310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,812 DEBUG Processing 466/510 atomic regions from SNP 139557 to 140157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,038 DEBUG Processing 307/337 atomic regions from SNP 92010 to 92610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,064 DEBUG Processing 467/510 atomic regions from SNP 139857 to 140457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,233 DEBUG Processing 308/337 atomic regions from SNP 92310 to 92910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,291 DEBUG Processing 468/510 atomic regions from SNP 140157 to 140757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,506 DEBUG Processing 309/337 atomic regions from SNP 92610 to 93210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,540 DEBUG Processing 469/510 atomic regions from SNP 140457 to 141057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,749 DEBUG Processing 310/337 atomic regions from SNP 92910 to 93510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,770 DEBUG Processing 470/510 atomic regions from SNP 140757 to 141357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,965 DEBUG Processing 311/337 atomic regions from SNP 93210 to 93810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,981 DEBUG Processing 471/510 atomic regions from SNP 141057 to 141657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,149 DEBUG Processing 312/337 atomic regions from SNP 93510 to 94110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,169 DEBUG Processing 472/510 atomic regions from SNP 141357 to 141957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,367 DEBUG Processing 313/337 atomic regions from SNP 93810 to 94410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,382 DEBUG Processing 473/510 atomic regions from SNP 141657 to 142257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,561 DEBUG Processing 314/337 atomic regions from SNP 94110 to 94710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,582 DEBUG Processing 474/510 atomic regions from SNP 141957 to 142557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,787 DEBUG Processing 315/337 atomic regions from SNP 94410 to 95010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,823 DEBUG Processing 475/510 atomic regions from SNP 142257 to 142857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,969 DEBUG Processing 316/337 atomic regions from SNP 94710 to 95310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,014 DEBUG Processing 476/510 atomic regions from SNP 142557 to 143157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,204 DEBUG Processing 317/337 atomic regions from SNP 95010 to 95610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,242 DEBUG Processing 477/510 atomic regions from SNP 142857 to 143457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,420 DEBUG Processing 318/337 atomic regions from SNP 95310 to 95910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,450 DEBUG Processing 478/510 atomic regions from SNP 143157 to 143757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,600 DEBUG Processing 319/337 atomic regions from SNP 95610 to 96210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,644 DEBUG Processing 479/510 atomic regions from SNP 143457 to 144057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,775 DEBUG Processing 320/337 atomic regions from SNP 95910 to 96510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,838 DEBUG Processing 480/510 atomic regions from SNP 143757 to 144357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,948 DEBUG Processing 321/337 atomic regions from SNP 96210 to 96810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,042 DEBUG Processing 481/510 atomic regions from SNP 144057 to 144657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,122 DEBUG Processing 322/337 atomic regions from SNP 96510 to 97110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,244 DEBUG Processing 482/510 atomic regions from SNP 144357 to 144957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,307 DEBUG Processing 323/337 atomic regions from SNP 96810 to 97410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,427 DEBUG Processing 483/510 atomic regions from SNP 144657 to 145257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,485 DEBUG Processing 324/337 atomic regions from SNP 97110 to 97710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,613 DEBUG Processing 484/510 atomic regions from SNP 144957 to 145557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,662 DEBUG Processing 325/337 atomic regions from SNP 97410 to 98010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,799 DEBUG Processing 485/510 atomic regions from SNP 145257 to 145857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,846 DEBUG Processing 326/337 atomic regions from SNP 97710 to 98310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,982 DEBUG Processing 486/510 atomic regions from SNP 145557 to 146157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,032 DEBUG Processing 327/337 atomic regions from SNP 98010 to 98610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,165 DEBUG Processing 487/510 atomic regions from SNP 145857 to 146457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,205 DEBUG Processing 328/337 atomic regions from SNP 98310 to 98910 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,349 DEBUG Processing 488/510 atomic regions from SNP 146157 to 146757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,381 DEBUG Processing 329/337 atomic regions from SNP 98610 to 99210 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,534 DEBUG Processing 489/510 atomic regions from SNP 146457 to 147057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,559 DEBUG Processing 330/337 atomic regions from SNP 98910 to 99510 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,719 DEBUG Processing 490/510 atomic regions from SNP 146757 to 147357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,738 DEBUG Processing 331/337 atomic regions from SNP 99210 to 99810 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,909 DEBUG Processing 491/510 atomic regions from SNP 147057 to 147657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,916 DEBUG Processing 332/337 atomic regions from SNP 99510 to 100110 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,094 DEBUG Processing 333/337 atomic regions from SNP 99810 to 100410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,099 DEBUG Processing 492/510 atomic regions from SNP 147357 to 147957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,275 DEBUG Processing 334/337 atomic regions from SNP 100110 to 100710 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,291 DEBUG Processing 493/510 atomic regions from SNP 147657 to 148257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,455 DEBUG Processing 335/337 atomic regions from SNP 100410 to 101010 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,484 DEBUG Processing 494/510 atomic regions from SNP 147957 to 148557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,651 DEBUG Processing 336/337 atomic regions from SNP 100710 to 101310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,672 DEBUG Processing 495/510 atomic regions from SNP 148257 to 148857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,834 DEBUG Processing 337/337 atomic regions from SNP 101010 to 101610 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,865 DEBUG Processing 496/510 atomic regions from SNP 148557 to 149157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,971 DEBUG Unique SNPs positions in subchromosome 1: 101611 2025-01-31 09:59:33,056 DEBUG Processing 497/510 atomic regions from SNP 148857 to 149457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,245 DEBUG Processing 498/510 atomic regions from SNP 149157 to 149757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,435 DEBUG Processing 499/510 atomic regions from SNP 149457 to 150057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,629 DEBUG Processing 500/510 atomic regions from SNP 149757 to 150357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,864 DEBUG Processing 501/510 atomic regions from SNP 150057 to 150657 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,101 DEBUG Processing 502/510 atomic regions from SNP 150357 to 150957 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,289 DEBUG Processing 503/510 atomic regions from SNP 150657 to 151257 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,495 DEBUG Processing 504/510 atomic regions from SNP 150957 to 151557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,719 DEBUG Processing 505/510 atomic regions from SNP 151257 to 151857 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,940 DEBUG Subchromosome time: 81.68682450428605, subchromosome SNPs: 101611 2025-01-31 09:59:34,940 DEBUG Estimated BADs: [3.94, 6.57, 0.66, 2.63, 0.26, 1.31, 0.44, 1.31, 0.66, 1.31, 0.33, 1.31, 0.26, 1.31, 2.63, 0.16, 0.66, 2.63, 1.31] SNP counts: [4260, 3730, 816, 4454, 971, 754, 5877, 3362, 8969, 4234, 3602, 10848, 4196, 10443, 12716, 4750, 2883, 937, 13809] SNP IDs counts: [4260, 3730, 816, 4454, 971, 754, 5877, 3362, 8969, 4234, 3602, 10848, 4196, 10443, 12716, 4750, 2883, 937, 13809] Critical gap: 419258bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 5.46Mbp, 7.57Mbp, 8.16Mbp, 10.99Mbp, 11.58Mbp, 12.02Mbp, 15.57Mbp, 17.42Mbp, 22.69Mbp, 25.02Mbp, 27.08Mbp, 33.10Mbp, 35.76Mbp, 41.80Mbp, 48.72Mbp, 51.59Mbp, 53.25Mbp, 53.76Mbp, 61.43Mbp] 2025-01-31 09:59:34,940 DEBUG chr19 time: 81.68726234510541 s 2025-01-31 09:59:34,962 DEBUG Processing 506/510 atomic regions from SNP 151557 to 152157 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,999 DEBUG chr19: Fitting background model for 19 segments 2025-01-31 09:59:35,204 DEBUG Processing 507/510 atomic regions from SNP 151857 to 152457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,425 DEBUG Processing 508/510 atomic regions from SNP 152157 to 152757 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,644 DEBUG Processing 509/510 atomic regions from SNP 152457 to 153057 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,891 DEBUG Processing 510/510 atomic regions from SNP 152757 to 153357 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,039 DEBUG Unique SNPs positions in subchromosome 1: 153358 2025-01-31 09:59:37,345 DEBUG Subchromosome time: 125.50825653225183, subchromosome SNPs: 153358 2025-01-31 09:59:37,346 DEBUG Estimated BADs: [1.16, 0.23, 1.16, 0.29, 2.31, 4.62, 1.16, 4.62, 1.16, 0.58, 1.16, 4.62, 2.31, 1.16, 5.78, 1.16, 2.31, 0.58] SNP counts: [22648, 3272, 16823, 6146, 4973, 4606, 1706, 881, 18292, 13665, 6893, 2245, 3830, 6410, 860, 13000, 18131, 8977] SNP IDs counts: [22648, 3272, 16823, 6146, 4973, 4606, 1706, 881, 18292, 13665, 6893, 2245, 3830, 6410, 860, 13000, 18131, 8977] Critical gap: 513562bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.11Mbp, 18.21Mbp, 27.95Mbp, 31.61Mbp, 34.40Mbp, 36.81Mbp, 37.84Mbp, 38.29Mbp, 48.64Mbp, 56.55Mbp, 60.46Mbp, 61.63Mbp, 63.73Mbp, 67.20Mbp, 67.65Mbp, 74.99Mbp, 84.97Mbp, 90.70Mbp] 2025-01-31 09:59:37,346 DEBUG chr18 time: 125.50879759714007 s 2025-01-31 09:59:37,434 DEBUG chr18: Fitting background model for 18 segments 2025-01-31 10:00:01,880 DEBUG Results of fit_background_model emitted. 2025-01-31 10:00:02,006 INFO Signal to noise fit: SPOT=0.38±0.17 2025-01-31 10:00:02,013 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 10:00:02,062 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:02,063 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:00:08,377 DEBUG chr2: Fitting background model for 1 segments 2025-01-31 10:00:08,746 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:00:08,819 INFO Signal to noise fit: SPOT=0.38±0.17 2025-01-31 10:00:08,824 INFO Final SPOT score: 0.38±0.17. Refitted 1 segments. 2025-01-31 10:00:08,869 INFO Estimating per-bp parameters of background model 2025-01-31 10:00:08,876 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:08,876 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:00:16,476 DEBUG chr5:3002500-5759751: Successfully fit background model for 2,427,841 bp. Use segment r for 0 bp 2025-01-31 10:00:17,111 DEBUG chr4:3050000-6899751: Successfully fit background model for 3,211,282 bp. Use segment r for 0 bp 2025-01-31 10:00:17,369 DEBUG chr4:6899751-8638251: Successfully fit background model for 1,496,976 bp. Use segment r for 9,021 bp 2025-01-31 10:00:17,669 DEBUG chr2:3051000-7406751: Successfully fit background model for 4,116,733 bp. Use segment r for 0 bp 2025-01-31 10:00:17,716 DEBUG chrX:3055000-7553751: Successfully fit background model for 2,006,500 bp. Use segment r for 1,212 bp 2025-01-31 10:00:17,841 DEBUG chr2:7406751-9084501: Successfully fit background model for 1,469,822 bp. Use segment r for 0 bp 2025-01-31 10:00:17,870 DEBUG chr3:3000000-8861251: Successfully fit background model for 5,071,035 bp. Use segment r for 510 bp 2025-01-31 10:00:17,921 DEBUG chrX:7553751-9639251: Successfully fit background model for 1,664,274 bp. Use segment r for 0 bp 2025-01-31 10:00:18,007 DEBUG chr3:8861251-10126751: Successfully fit background model for 1,162,278 bp. Use segment r for 0 bp 2025-01-31 10:00:18,346 DEBUG chr4:8638251-15562751: Successfully fit background model for 6,258,958 bp. Use segment r for 0 bp 2025-01-31 10:00:18,623 DEBUG chrX:9639251-15236251: Successfully fit background model for 5,124,354 bp. Use segment r for 0 bp 2025-01-31 10:00:18,646 DEBUG chr3:10126751-14866751: Successfully fit background model for 4,102,290 bp. Use segment r for 0 bp 2025-01-31 10:00:18,665 DEBUG chr3:14866751-14926251: Successfully fit background model for 55,760 bp. Use segment r for 0 bp 2025-01-31 10:00:18,886 DEBUG chr1:3000500-9541251: Successfully fit background model for 5,683,586 bp. Use segment r for 13,974 bp 2025-01-31 10:00:18,943 DEBUG chr1:9541251-9929001: Successfully fit background model for 373,658 bp. Use segment r for 0 bp 2025-01-31 10:00:19,023 DEBUG chr2:9084501-15477251: Successfully fit background model for 5,831,983 bp. Use segment r for 11,833 bp 2025-01-31 10:00:19,105 DEBUG chr3:14926251-19147251: Successfully fit background model for 3,442,775 bp. Use segment r for 0 bp 2025-01-31 10:00:19,192 DEBUG chr3:19147251-19888251: Successfully fit background model for 687,540 bp. Use segment r for 0 bp 2025-01-31 10:00:19,278 DEBUG chr2:15477251-18025251: Successfully fit background model for 2,272,092 bp. Use segment r for 0 bp 2025-01-31 10:00:19,294 DEBUG chr2:18025251-18096251: Successfully fit background model for 70,072 bp. Use segment r for 0 bp 2025-01-31 10:00:20,290 DEBUG chr3:19888251-28158751: Successfully fit background model for 7,303,314 bp. Use segment r for 0 bp 2025-01-31 10:00:20,330 DEBUG chr1:9929001-16617751: Successfully fit background model for 6,029,013 bp. Use segment r for 2,047 bp 2025-01-31 10:00:20,673 DEBUG chr5:5759751-20834251: Successfully fit background model for 12,011,365 bp. Use segment r for 1,387 bp 2025-01-31 10:00:20,685 DEBUG chr2:18096251-24916251: Successfully fit background model for 6,068,224 bp. Use segment r for 2,904 bp 2025-01-31 10:00:20,960 DEBUG chr5:20834251-23403251: Successfully fit background model for 2,347,914 bp. Use segment r for 0 bp 2025-01-31 10:00:21,191 DEBUG chr5:23403251-25538251: Successfully fit background model for 2,034,022 bp. Use segment r for 0 bp 2025-01-31 10:00:21,297 DEBUG chrX:15236251-26915001: Successfully fit background model for 8,160,980 bp. Use segment r for 24,813 bp 2025-01-31 10:00:21,526 DEBUG chr3:28158751-35917751: Successfully fit background model for 7,113,803 bp. Use segment r for 1,669 bp 2025-01-31 10:00:21,685 DEBUG chr5:25538251-30226751: Successfully fit background model for 4,192,549 bp. Use segment r for 0 bp 2025-01-31 10:00:22,443 DEBUG chr2:24916251-36253251: Successfully fit background model for 11,016,160 bp. Use segment r for 0 bp 2025-01-31 10:00:22,571 DEBUG chr2:36253251-36975251: Successfully fit background model for 594,275 bp. Use segment r for 8 bp 2025-01-31 10:00:22,656 DEBUG chrX:31132500-38920751: Successfully fit background model for 2,838,895 bp. Use segment r for 5,693 bp 2025-01-31 10:00:22,674 DEBUG chr4:15562751-32592751: Successfully fit background model for 15,095,633 bp. Use segment r for 3,345 bp 2025-01-31 10:00:22,818 DEBUG chr2:36975251-39373751: Successfully fit background model for 2,242,276 bp. Use segment r for 0 bp 2025-01-31 10:00:22,917 DEBUG chr4:32592751-34773251: Successfully fit background model for 2,049,919 bp. Use segment r for 0 bp 2025-01-31 10:00:22,937 DEBUG chr5:30226751-38867751: Successfully fit background model for 8,203,554 bp. Use segment r for 0 bp 2025-01-31 10:00:23,187 DEBUG chr5:38867751-41231001: Successfully fit background model for 2,150,863 bp. Use segment r for 0 bp 2025-01-31 10:00:23,617 DEBUG chr4:34773251-40134751: Successfully fit background model for 4,772,022 bp. Use segment r for 0 bp 2025-01-31 10:00:23,719 DEBUG chr1:16617751-30870751: Successfully fit background model for 12,727,529 bp. Use segment r for 762 bp 2025-01-31 10:00:23,764 DEBUG chr1:30870751-30968251: Successfully fit background model for 86,288 bp. Use segment r for 0 bp 2025-01-31 10:00:23,796 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,355 bp. Use segment r for 0 bp 2025-01-31 10:00:23,826 DEBUG chr5:41231001-45996251: Successfully fit background model for 4,264,812 bp. Use segment r for 0 bp 2025-01-31 10:00:23,831 DEBUG chr2:39373751-44528251: Successfully fit background model for 4,699,215 bp. Use segment r for 12,645 bp 2025-01-31 10:00:23,941 DEBUG chr2:44528251-45503751: Successfully fit background model for 935,112 bp. Use segment r for 0 bp 2025-01-31 10:00:24,001 DEBUG chr1:30968251-33458751: Successfully fit background model for 2,179,497 bp. Use segment r for 0 bp 2025-01-31 10:00:24,152 DEBUG chrX:38920751-48255251: Successfully fit background model for 8,077,957 bp. Use segment r for 0 bp 2025-01-31 10:00:24,220 DEBUG chr2:45503751-47921251: Successfully fit background model for 2,184,443 bp. Use segment r for 0 bp 2025-01-31 10:00:24,312 DEBUG chr4:42706000-47049751: Successfully fit background model for 4,100,344 bp. Use segment r for 0 bp 2025-01-31 10:00:24,336 DEBUG chr5:45996251-51116251: Successfully fit background model for 4,689,800 bp. Use segment r for 0 bp 2025-01-31 10:00:24,386 DEBUG chrX:48255251-50547251: Successfully fit background model for 1,947,288 bp. Use segment r for 0 bp 2025-01-31 10:00:24,401 DEBUG chrX:50547251-50636251: Successfully fit background model for 81,397 bp. Use segment r for 0 bp 2025-01-31 10:00:24,576 DEBUG chr4:47049751-49693251: Successfully fit background model for 2,461,234 bp. Use segment r for 0 bp 2025-01-31 10:00:24,664 DEBUG chr5:51116251-54358251: Successfully fit background model for 3,113,220 bp. Use segment r for 0 bp 2025-01-31 10:00:24,697 DEBUG chr1:33458751-39367251: Successfully fit background model for 5,636,003 bp. Use segment r for 0 bp 2025-01-31 10:00:24,786 DEBUG chr4:49693251-51797751: Successfully fit background model for 1,860,829 bp. Use segment r for 0 bp 2025-01-31 10:00:24,946 DEBUG chr2:47921251-53266751: Successfully fit background model for 5,060,158 bp. Use segment r for 0 bp 2025-01-31 10:00:25,120 DEBUG chr4:51797751-54592251: Successfully fit background model for 2,539,795 bp. Use segment r for 0 bp 2025-01-31 10:00:25,170 DEBUG chr1:39367251-44098251: Successfully fit background model for 4,528,764 bp. Use segment r for 0 bp 2025-01-31 10:00:25,191 DEBUG chr1:44098251-44174251: Successfully fit background model for 74,297 bp. Use segment r for 0 bp 2025-01-31 10:00:25,289 DEBUG chr3:35917751-51152251: Successfully fit background model for 13,629,063 bp. Use segment r for 36,328 bp 2025-01-31 10:00:25,328 DEBUG chr2:53266751-57081251: Successfully fit background model for 3,266,080 bp. Use segment r for 0 bp 2025-01-31 10:00:25,366 DEBUG chr3:51152251-51579751: Successfully fit background model for 414,951 bp. Use segment r for 0 bp 2025-01-31 10:00:25,795 DEBUG chr2:57081251-60938751: Successfully fit background model for 3,589,772 bp. Use segment r for 0 bp 2025-01-31 10:00:25,811 DEBUG chr4:54592251-58886251: Successfully fit background model for 4,053,355 bp. Use segment r for 3,465 bp 2025-01-31 10:00:25,893 DEBUG chr4:58886251-59568251: Successfully fit background model for 655,689 bp. Use segment r for 0 bp 2025-01-31 10:00:26,302 DEBUG chr1:44174251-52025251: Successfully fit background model for 6,820,607 bp. Use segment r for 0 bp 2025-01-31 10:00:26,391 DEBUG chr1:52025251-52722251: Successfully fit background model for 650,353 bp. Use segment r for 0 bp 2025-01-31 10:00:26,646 DEBUG chr4:59568251-63967751: Successfully fit background model for 2,508,215 bp. Use segment r for 12,309 bp 2025-01-31 10:00:26,652 DEBUG chr2:60938751-67830751: Successfully fit background model for 6,399,372 bp. Use segment r for 0 bp 2025-01-31 10:00:26,847 DEBUG chr2:67830751-69709751: Successfully fit background model for 1,766,176 bp. Use segment r for 0 bp 2025-01-31 10:00:27,056 DEBUG chr1:52722251-58391751: Successfully fit background model for 5,223,102 bp. Use segment r for 0 bp 2025-01-31 10:00:27,202 DEBUG chr2:69709751-73374751: Successfully fit background model for 3,558,755 bp. Use segment r for 0 bp 2025-01-31 10:00:27,218 DEBUG chr1:58391751-59921251: Successfully fit background model for 1,441,216 bp. Use segment r for 0 bp 2025-01-31 10:00:27,226 DEBUG chr5:54358251-63364751: Successfully fit background model for 7,974,715 bp. Use segment r for 23 bp 2025-01-31 10:00:27,543 DEBUG chr1:59921251-62694751: Successfully fit background model for 2,591,814 bp. Use segment r for 0 bp 2025-01-31 10:00:27,797 DEBUG chr1:62694751-65228751: Successfully fit background model for 2,384,398 bp. Use segment r for 0 bp 2025-01-31 10:00:27,812 DEBUG chr5:63364751-68681751: Successfully fit background model for 4,996,661 bp. Use segment r for 0 bp 2025-01-31 10:00:28,102 DEBUG chr5:68681751-71558751: Successfully fit background model for 2,529,778 bp. Use segment r for 0 bp 2025-01-31 10:00:28,308 DEBUG chr3:51579751-71201751: Successfully fit background model for 17,763,063 bp. Use segment r for 0 bp 2025-01-31 10:00:28,386 DEBUG chr2:73374751-80869251: Successfully fit background model for 7,114,156 bp. Use segment r for 0 bp 2025-01-31 10:00:28,727 DEBUG chr1:65228751-72207751: Successfully fit background model for 6,432,808 bp. Use segment r for 0 bp 2025-01-31 10:00:28,731 DEBUG chr5:71558751-77840751: Successfully fit background model for 5,945,677 bp. Use segment r for 0 bp 2025-01-31 10:00:28,754 DEBUG chr1:72207751-72308751: Successfully fit background model for 97,871 bp. Use segment r for 0 bp 2025-01-31 10:00:28,779 DEBUG chr2:80869251-84649751: Successfully fit background model for 3,211,727 bp. Use segment r for 0 bp 2025-01-31 10:00:28,907 DEBUG chr2:84649751-85273251: Successfully fit background model for 594,038 bp. Use segment r for 0 bp 2025-01-31 10:00:29,020 DEBUG chr1:72308751-74233751: Successfully fit background model for 1,823,365 bp. Use segment r for 0 bp 2025-01-31 10:00:29,151 DEBUG chr1:74233751-75560251: Successfully fit background model for 1,229,037 bp. Use segment r for 0 bp 2025-01-31 10:00:29,306 DEBUG chr5:77840751-83370751: Successfully fit background model for 4,945,381 bp. Use segment r for 0 bp 2025-01-31 10:00:29,643 DEBUG chr2:85273251-89459251: Successfully fit background model for 3,660,090 bp. Use segment r for 109 bp 2025-01-31 10:00:29,788 DEBUG chr2:89459251-90845251: Successfully fit background model for 1,048,320 bp. Use segment r for 0 bp 2025-01-31 10:00:29,791 DEBUG chr1:75560251-81027751: Successfully fit background model for 5,047,138 bp. Use segment r for 0 bp 2025-01-31 10:00:29,828 DEBUG chr3:71201751-79509251: Successfully fit background model for 7,401,452 bp. Use segment r for 7,379 bp 2025-01-31 10:00:30,156 DEBUG chr1:81027751-84837251: Successfully fit background model for 3,499,003 bp. Use segment r for 0 bp 2025-01-31 10:00:30,180 DEBUG chr2:90845251-94722751: Successfully fit background model for 3,763,063 bp. Use segment r for 0 bp 2025-01-31 10:00:30,287 DEBUG chr3:79509251-84021251: Successfully fit background model for 4,156,011 bp. Use segment r for 0 bp 2025-01-31 10:00:30,313 DEBUG chr1:84837251-86255751: Successfully fit background model for 883,180 bp. Use segment r for 0 bp 2025-01-31 10:00:30,351 DEBUG chr1:86255751-86569751: Successfully fit background model for 303,322 bp. Use segment r for 0 bp 2025-01-31 10:00:30,746 DEBUG chr3:84021251-87881751: Successfully fit background model for 3,680,939 bp. Use segment r for 0 bp 2025-01-31 10:00:30,812 DEBUG chrX:50636251-72904251: Successfully fit background model for 18,173,717 bp. Use segment r for 11,615 bp 2025-01-31 10:00:31,010 DEBUG chr3:87881751-90471751: Successfully fit background model for 2,455,878 bp. Use segment r for 0 bp 2025-01-31 10:00:31,092 DEBUG chr5:83370751-91957251: Successfully fit background model for 7,672,020 bp. Use segment r for 11,164 bp 2025-01-31 10:00:31,144 DEBUG chr1:86569751-92894751: Successfully fit background model for 6,059,744 bp. Use segment r for 0 bp 2025-01-31 10:00:31,164 DEBUG chrX:72904251-75672751: Successfully fit background model for 2,155,673 bp. Use segment r for 0 bp 2025-01-31 10:00:31,251 DEBUG chr1:92894751-93860251: Successfully fit background model for 926,156 bp. Use segment r for 0 bp 2025-01-31 10:00:31,350 DEBUG chrX:75672751-77417751: Successfully fit background model for 1,409,096 bp. Use segment r for 0 bp 2025-01-31 10:00:31,531 DEBUG chr2:94722751-101083251: Successfully fit background model for 5,294,231 bp. Use segment r for 12,205 bp 2025-01-31 10:00:31,672 DEBUG chr3:90471751-94369501: Successfully fit background model for 2,977,266 bp. Use segment r for 10,799 bp 2025-01-31 10:00:31,704 DEBUG chr1:93860251-98594751: Successfully fit background model for 4,059,790 bp. Use segment r for 0 bp 2025-01-31 10:00:31,772 DEBUG chr4:63967751-81344751: Successfully fit background model for 15,387,093 bp. Use segment r for 3,958 bp 2025-01-31 10:00:31,921 DEBUG chr3:94369501-96718251: Successfully fit background model for 2,148,124 bp. Use segment r for 0 bp 2025-01-31 10:00:31,965 DEBUG chr5:91957251-97680751: Successfully fit background model for 3,302,145 bp. Use segment r for 7,907 bp 2025-01-31 10:00:32,274 DEBUG chr2:101083251-107995751: Successfully fit background model for 6,537,470 bp. Use segment r for 0 bp 2025-01-31 10:00:32,299 DEBUG chr4:81344751-86573251: Successfully fit background model for 4,852,456 bp. Use segment r for 0 bp 2025-01-31 10:00:32,327 DEBUG chr3:96718251-100414251: Successfully fit background model for 3,264,902 bp. Use segment r for 0 bp 2025-01-31 10:00:32,543 DEBUG chr1:98594751-104233251: Successfully fit background model for 4,943,995 bp. Use segment r for 0 bp 2025-01-31 10:00:32,616 DEBUG chr4:86573251-89589751: Successfully fit background model for 2,694,434 bp. Use segment r for 0 bp 2025-01-31 10:00:32,651 DEBUG chr5:97680751-103653251: Successfully fit background model for 5,625,055 bp. Use segment r for 0 bp 2025-01-31 10:00:32,686 DEBUG chr5:103653251-103839751: Successfully fit background model for 184,695 bp. Use segment r for 0 bp 2025-01-31 10:00:32,968 DEBUG chr4:89589751-92718251: Successfully fit background model for 2,740,228 bp. Use segment r for 0 bp 2025-01-31 10:00:33,088 DEBUG chr1:104233251-107856251: Successfully fit background model for 3,295,810 bp. Use segment r for 817 bp 2025-01-31 10:00:33,206 DEBUG chr5:103839751-109170751: Successfully fit background model for 4,821,195 bp. Use segment r for 0 bp 2025-01-31 10:00:33,325 DEBUG chr5:109170751-110093251: Successfully fit background model for 757,707 bp. Use segment r for 0 bp 2025-01-31 10:00:33,410 DEBUG chr5:110093251-110606751: Successfully fit background model for 497,111 bp. Use segment r for 0 bp 2025-01-31 10:00:33,596 DEBUG chr4:92718251-97745251: Successfully fit background model for 4,553,828 bp. Use segment r for 0 bp 2025-01-31 10:00:33,779 DEBUG chr5:110606751-113783751: Successfully fit background model for 3,096,883 bp. Use segment r for 0 bp 2025-01-31 10:00:33,890 DEBUG chr3:100414251-109512751: Successfully fit background model for 8,613,377 bp. Use segment r for 0 bp 2025-01-31 10:00:33,963 DEBUG chr5:113783751-115524251: Successfully fit background model for 1,691,955 bp. Use segment r for 0 bp 2025-01-31 10:00:34,513 DEBUG chr3:109512751-115212501: Successfully fit background model for 4,837,448 bp. Use segment r for 0 bp 2025-01-31 10:00:34,603 DEBUG chr5:115524251-120090751: Successfully fit background model for 4,471,126 bp. Use segment r for 0 bp 2025-01-31 10:00:34,665 DEBUG chr1:107856251-118309251: Successfully fit background model for 9,100,889 bp. Use segment r for 0 bp 2025-01-31 10:00:34,745 DEBUG chr3:115212501-117382751: Successfully fit background model for 2,014,196 bp. Use segment r for 0 bp 2025-01-31 10:00:34,834 DEBUG chr4:97745251-106731251: Successfully fit background model for 8,446,801 bp. Use segment r for 0 bp 2025-01-31 10:00:34,848 DEBUG chr1:118309251-120093251: Successfully fit background model for 1,734,809 bp. Use segment r for 0 bp 2025-01-31 10:00:35,080 DEBUG chr1:120093251-122421751: Successfully fit background model for 2,183,238 bp. Use segment r for 0 bp 2025-01-31 10:00:35,127 DEBUG chr3:117382751-121161251: Successfully fit background model for 3,503,676 bp. Use segment r for 0 bp 2025-01-31 10:00:35,147 DEBUG chr2:107995751-118636251: Successfully fit background model for 9,732,592 bp. Use segment r for 1,264 bp 2025-01-31 10:00:35,175 DEBUG chr5:120090751-125406251: Successfully fit background model for 5,090,563 bp. Use segment r for 0 bp 2025-01-31 10:00:35,197 DEBUG chr4:106731251-110304251: Successfully fit background model for 3,392,749 bp. Use segment r for 0 bp 2025-01-31 10:00:35,239 DEBUG chrX:77417751-91308751: Successfully fit background model for 12,018,880 bp. Use segment r for 424 bp 2025-01-31 10:00:35,261 DEBUG chr2:118636251-119474751: Successfully fit background model for 820,789 bp. Use segment r for 0 bp 2025-01-31 10:00:35,263 DEBUG chr1:122421751-124357251: Successfully fit background model for 1,774,613 bp. Use segment r for 0 bp 2025-01-31 10:00:35,378 DEBUG chrX:91308751-92043501: Successfully fit background model for 415,520 bp. Use segment r for 1,063 bp 2025-01-31 10:00:35,443 DEBUG chr3:121161251-123862751: Successfully fit background model for 2,601,078 bp. Use segment r for 0 bp 2025-01-31 10:00:35,544 DEBUG chrX:92043501-93621751: Successfully fit background model for 1,354,386 bp. Use segment r for 0 bp 2025-01-31 10:00:35,635 DEBUG chr5:125406251-129714751: Successfully fit background model for 4,121,296 bp. Use segment r for 0 bp 2025-01-31 10:00:35,641 DEBUG chr3:123862751-125428751: Successfully fit background model for 1,412,942 bp. Use segment r for 0 bp 2025-01-31 10:00:35,681 DEBUG chrX:93621751-94825251: Successfully fit background model for 1,061,953 bp. Use segment r for 0 bp 2025-01-31 10:00:35,685 DEBUG chr5:129714751-130051251: Successfully fit background model for 277,239 bp. Use segment r for 0 bp 2025-01-31 10:00:35,696 DEBUG chr2:119474751-123017751: Successfully fit background model for 3,337,950 bp. Use segment r for 0 bp 2025-01-31 10:00:35,780 DEBUG chr4:110304251-113987751: Successfully fit background model for 3,226,190 bp. Use segment r for 4,072 bp 2025-01-31 10:00:35,829 DEBUG chr2:123017751-124092251: Successfully fit background model for 975,576 bp. Use segment r for 0 bp 2025-01-31 10:00:35,891 DEBUG chr4:113987751-114986251: Successfully fit background model for 917,770 bp. Use segment r for 0 bp 2025-01-31 10:00:35,924 DEBUG chr4:114986251-115116251: Successfully fit background model for 127,412 bp. Use segment r for 0 bp 2025-01-31 10:00:36,020 DEBUG chr4:115116251-115820251: Successfully fit background model for 531,040 bp. Use segment r for 0 bp 2025-01-31 10:00:36,062 DEBUG chr1:124357251-130691751: Successfully fit background model for 5,889,182 bp. Use segment r for 0 bp 2025-01-31 10:00:36,126 DEBUG chr2:124092251-127068251: Successfully fit background model for 2,802,777 bp. Use segment r for 0 bp 2025-01-31 10:00:36,249 DEBUG chr5:130051251-134173251: Successfully fit background model for 3,955,870 bp. Use segment r for 0 bp 2025-01-31 10:00:36,435 DEBUG chr4:115820251-119232251: Successfully fit background model for 3,258,638 bp. Use segment r for 0 bp 2025-01-31 10:00:36,460 DEBUG chrX:94825251-101208251: Successfully fit background model for 5,531,529 bp. Use segment r for 0 bp 2025-01-31 10:00:36,650 DEBUG chr1:130691751-136296251: Successfully fit background model for 5,453,270 bp. Use segment r for 0 bp 2025-01-31 10:00:36,701 DEBUG chrX:101208251-103629251: Successfully fit background model for 2,144,339 bp. Use segment r for 0 bp 2025-01-31 10:00:36,835 DEBUG chr3:125428751-133606751: Successfully fit background model for 7,601,076 bp. Use segment r for 0 bp 2025-01-31 10:00:36,837 DEBUG chr2:127068251-132572751: Successfully fit background model for 5,284,313 bp. Use segment r for 0 bp 2025-01-31 10:00:36,963 DEBUG chr1:136296251-139599001: Successfully fit background model for 3,088,286 bp. Use segment r for 0 bp 2025-01-31 10:00:37,024 DEBUG chr3:133606751-135276751: Successfully fit background model for 1,470,550 bp. Use segment r for 0 bp 2025-01-31 10:00:37,121 DEBUG chr3:135276751-136047751: Successfully fit background model for 730,430 bp. Use segment r for 0 bp 2025-01-31 10:00:37,213 DEBUG chr2:132572751-136192751: Successfully fit background model for 3,395,892 bp. Use segment r for 0 bp 2025-01-31 10:00:37,389 DEBUG chr1:139599001-143699751: Successfully fit background model for 3,490,971 bp. Use segment r for 0 bp 2025-01-31 10:00:37,444 DEBUG chr3:136047751-139179751: Successfully fit background model for 2,948,316 bp. Use segment r for 0 bp 2025-01-31 10:00:37,474 DEBUG chr1:143699751-144430751: Successfully fit background model for 636,249 bp. Use segment r for 0 bp 2025-01-31 10:00:37,786 DEBUG chr5:134173251-143966751: Successfully fit background model for 9,255,207 bp. Use segment r for 0 bp 2025-01-31 10:00:37,823 DEBUG chrX:103629251-113343001: Successfully fit background model for 8,237,419 bp. Use segment r for 0 bp 2025-01-31 10:00:37,902 DEBUG chr3:139179751-141972251: Successfully fit background model for 2,538,595 bp. Use segment r for 3,574 bp 2025-01-31 10:00:38,011 DEBUG chr1:144430751-149689751: Successfully fit background model for 4,606,864 bp. Use segment r for 0 bp 2025-01-31 10:00:38,040 DEBUG chr2:136192751-143869751: Successfully fit background model for 7,102,315 bp. Use segment r for 0 bp 2025-01-31 10:00:38,148 DEBUG chr1:149689751-151050751: Successfully fit background model for 1,273,313 bp. Use segment r for 0 bp 2025-01-31 10:00:38,173 DEBUG chr2:143869751-145068751: Successfully fit background model for 1,143,940 bp. Use segment r for 0 bp 2025-01-31 10:00:38,236 DEBUG chr4:119232251-131718751: Successfully fit background model for 11,151,557 bp. Use segment r for 0 bp 2025-01-31 10:00:38,426 DEBUG chr3:141972251-146964751: Successfully fit background model for 4,736,180 bp. Use segment r for 0 bp 2025-01-31 10:00:38,721 DEBUG chr4:131718751-136307751: Successfully fit background model for 4,467,878 bp. Use segment r for 0 bp 2025-01-31 10:00:38,727 DEBUG chr5:143966751-151834684: Successfully fit background model for 7,179,283 bp. Use segment r for 0 bp 2025-01-31 10:00:38,916 DEBUG chr3:146964751-151508751: Successfully fit background model for 4,306,351 bp. Use segment r for 0 bp 2025-01-31 10:00:39,028 DEBUG chr2:145068751-150745751: Successfully fit background model for 5,205,532 bp. Use segment r for 1,096 bp 2025-01-31 10:00:39,171 DEBUG chr4:136307751-140678751: Successfully fit background model for 4,284,874 bp. Use segment r for 0 bp 2025-01-31 10:00:39,271 DEBUG chr3:151508751-155016501: Successfully fit background model for 3,315,180 bp. Use segment r for 0 bp 2025-01-31 10:00:39,281 DEBUG chr4:140678751-141656751: Successfully fit background model for 952,499 bp. Use segment r for 0 bp 2025-01-31 10:00:39,578 DEBUG chr3:155016501-157049251: Successfully fit background model for 1,857,707 bp. Use segment r for 13,314 bp 2025-01-31 10:00:39,700 DEBUG chr3:157049251-158087251: Successfully fit background model for 968,739 bp. Use segment r for 0 bp 2025-01-31 10:00:40,016 DEBUG chr3:158087251-160039680: Successfully fit background model for 1,572,351 bp. Use segment r for 453 bp 2025-01-31 10:00:40,169 DEBUG chrX:113343001-124247501: Successfully fit background model for 8,525,128 bp. Use segment r for 12,614 bp 2025-01-31 10:00:40,450 DEBUG chr4:141656751-147847751: Successfully fit background model for 3,958,005 bp. Use segment r for 2,240 bp 2025-01-31 10:00:40,575 DEBUG chr2:150745751-159202751: Successfully fit background model for 7,872,762 bp. Use segment r for 0 bp 2025-01-31 10:00:40,847 DEBUG chr1:151050751-168264251: Successfully fit background model for 16,201,020 bp. Use segment r for 0 bp 2025-01-31 10:00:40,887 DEBUG chr4:147847751-152209251: Successfully fit background model for 4,277,255 bp. Use segment r for 0 bp 2025-01-31 10:00:40,988 DEBUG chr2:159202751-163258251: Successfully fit background model for 3,858,276 bp. Use segment r for 0 bp 2025-01-31 10:00:41,084 DEBUG chr4:152209251-153941751: Successfully fit background model for 1,695,509 bp. Use segment r for 0 bp 2025-01-31 10:00:41,114 DEBUG chr1:168264251-170834751: Successfully fit background model for 2,414,461 bp. Use segment r for 0 bp 2025-01-31 10:00:41,257 DEBUG chr1:170834751-172240251: Successfully fit background model for 1,305,019 bp. Use segment r for 0 bp 2025-01-31 10:00:41,341 DEBUG chr4:153941751-156508116: Successfully fit background model for 2,268,846 bp. Use segment r for 0 bp 2025-01-31 10:00:41,458 DEBUG chrX:126011000-134047251: Successfully fit background model for 6,914,355 bp. Use segment r for 11,033 bp 2025-01-31 10:00:41,461 DEBUG chr2:163258251-168022751: Successfully fit background model for 4,591,781 bp. Use segment r for 0 bp 2025-01-31 10:00:41,953 DEBUG chr1:172240251-178301751: Successfully fit background model for 5,471,814 bp. Use segment r for 0 bp 2025-01-31 10:00:41,988 DEBUG chr1:178301751-178451251: Successfully fit background model for 143,771 bp. Use segment r for 0 bp 2025-01-31 10:00:42,088 DEBUG chr1:178451251-179498251: Successfully fit background model for 1,024,121 bp. Use segment r for 0 bp 2025-01-31 10:00:42,261 DEBUG chr1:179498251-181341251: Successfully fit background model for 1,762,513 bp. Use segment r for 0 bp 2025-01-31 10:00:42,676 DEBUG chr1:181341251-185328001: Successfully fit background model for 3,711,923 bp. Use segment r for 0 bp 2025-01-31 10:00:42,753 DEBUG chr2:168022751-175179001: Successfully fit background model for 6,812,830 bp. Use segment r for 94 bp 2025-01-31 10:00:43,080 DEBUG chr2:176700000-179845751: Successfully fit background model for 1,954,462 bp. Use segment r for 0 bp 2025-01-31 10:00:43,312 DEBUG chr2:179845751-182113224: Successfully fit background model for 2,078,427 bp. Use segment r for 0 bp 2025-01-31 10:00:43,354 DEBUG chr1:185328001-190910251: Successfully fit background model for 5,379,539 bp. Use segment r for 0 bp 2025-01-31 10:00:43,483 DEBUG chr1:190910251-192129251: Successfully fit background model for 1,125,298 bp. Use segment r for 0 bp 2025-01-31 10:00:43,852 DEBUG chr1:192129251-195471971: Successfully fit background model for 3,043,344 bp. Use segment r for 0 bp 2025-01-31 10:00:51,548 DEBUG chrX:134047251-169971501: Successfully fit background model for 29,757,646 bp. Use segment r for 19,018 bp 2025-01-31 10:00:51,765 DEBUG chrX:169971501-171031299: Successfully fit background model for 5,730 bp. Use segment r for 0 bp 2025-01-31 10:02:20,479 DEBUG chr6:3050000-10031251: Successfully fit background model for 6,194,084 bp. Use segment r for 2,604 bp 2025-01-31 10:02:21,323 DEBUG chr6:10031251-17633751: Successfully fit background model for 6,657,464 bp. Use segment r for 0 bp 2025-01-31 10:02:21,494 DEBUG chr6:17633751-19127251: Successfully fit background model for 1,360,113 bp. Use segment r for 0 bp 2025-01-31 10:02:21,534 DEBUG chr7:3004000-3570751: Successfully fit background model for 421,232 bp. Use segment r for 0 bp 2025-01-31 10:02:21,791 DEBUG chr7:3570751-5109501: Successfully fit background model for 1,233,090 bp. Use segment r for 2,988 bp 2025-01-31 10:02:21,861 DEBUG chr7:5109501-5740751: Successfully fit background model for 460,298 bp. Use segment r for 0 bp 2025-01-31 10:02:22,021 DEBUG chr7:5740751-7300251: Successfully fit background model for 1,314,608 bp. Use segment r for 0 bp 2025-01-31 10:02:22,295 DEBUG chr10:3101500-3952251: Successfully fit background model for 765,136 bp. Use segment r for 0 bp 2025-01-31 10:02:22,493 DEBUG chr10:3952251-5846751: Successfully fit background model for 1,754,537 bp. Use segment r for 0 bp 2025-01-31 10:02:22,498 DEBUG chr6:19127251-28397751: Successfully fit background model for 8,264,475 bp. Use segment r for 0 bp 2025-01-31 10:02:22,844 DEBUG chr7:7300251-12341251: Successfully fit background model for 1,712,347 bp. Use segment r for 21,376 bp 2025-01-31 10:02:22,946 DEBUG chr7:12341251-12920251: Successfully fit background model for 456,409 bp. Use segment r for 530 bp 2025-01-31 10:02:22,965 DEBUG chr7:12920251-13064251: Successfully fit background model for 137,393 bp. Use segment r for 0 bp 2025-01-31 10:02:23,371 DEBUG chr7:13064251-15908251: Successfully fit background model for 1,751,276 bp. Use segment r for 7,074 bp 2025-01-31 10:02:23,382 DEBUG chr6:28397751-35910251: Successfully fit background model for 7,125,108 bp. Use segment r for 0 bp 2025-01-31 10:02:23,420 DEBUG chr10:5846751-12913251: Successfully fit background model for 6,339,092 bp. Use segment r for 0 bp 2025-01-31 10:02:23,496 DEBUG chr7:15908251-17090751: Successfully fit background model for 1,147,176 bp. Use segment r for 0 bp 2025-01-31 10:02:23,629 DEBUG chr10:12913251-14847751: Successfully fit background model for 1,831,549 bp. Use segment r for 0 bp 2025-01-31 10:02:23,655 DEBUG chr6:35910251-38233251: Successfully fit background model for 2,180,887 bp. Use segment r for 0 bp 2025-01-31 10:02:23,778 DEBUG chr6:38233251-39405751: Successfully fit background model for 1,144,744 bp. Use segment r for 0 bp 2025-01-31 10:02:23,837 DEBUG chr10:14847751-16903751: Successfully fit background model for 1,792,651 bp. Use segment r for 0 bp 2025-01-31 10:02:23,839 DEBUG chr7:17090751-19001751: Successfully fit background model for 1,359,779 bp. Use segment r for 16,714 bp 2025-01-31 10:02:23,925 DEBUG chr7:19001751-19801251: Successfully fit background model for 782,932 bp. Use segment r for 0 bp 2025-01-31 10:02:23,959 DEBUG chr7:19801251-20097501: Successfully fit background model for 241,920 bp. Use segment r for 0 bp 2025-01-31 10:02:24,179 DEBUG chr7:22791500-24248751: Successfully fit background model for 794,995 bp. Use segment r for 1,314 bp 2025-01-31 10:02:24,242 DEBUG chr6:39405751-43998751: Successfully fit background model for 4,106,370 bp. Use segment r for 0 bp 2025-01-31 10:02:24,382 DEBUG chr7:24248751-25918001: Successfully fit background model for 1,570,058 bp. Use segment r for 0 bp 2025-01-31 10:02:24,483 DEBUG chr6:43998751-46371751: Successfully fit background model for 2,150,327 bp. Use segment r for 0 bp 2025-01-31 10:02:24,511 DEBUG chr7:25918001-27165751: Successfully fit background model for 979,293 bp. Use segment r for 0 bp 2025-01-31 10:02:25,001 DEBUG chr7:27165751-31040251: Successfully fit background model for 3,644,810 bp. Use segment r for 0 bp 2025-01-31 10:02:25,424 DEBUG chr7:31040251-33845251: Successfully fit background model for 1,167,145 bp. Use segment r for 41,890 bp 2025-01-31 10:02:25,633 DEBUG chr7:33845251-35838251: Successfully fit background model for 1,891,466 bp. Use segment r for 0 bp 2025-01-31 10:02:25,797 DEBUG chr7:35838251-37471751: Successfully fit background model for 1,591,613 bp. Use segment r for 0 bp 2025-01-31 10:02:25,883 DEBUG chr7:37471751-38278251: Successfully fit background model for 795,384 bp. Use segment r for 0 bp 2025-01-31 10:02:26,961 DEBUG chr7:38278251-43925001: Successfully fit background model for 4,106,825 bp. Use segment r for 5,425 bp 2025-01-31 10:02:27,062 DEBUG chr7:43925001-44814751: Successfully fit background model for 837,772 bp. Use segment r for 0 bp 2025-01-31 10:02:27,155 DEBUG chr7:44814751-45708251: Successfully fit background model for 876,987 bp. Use segment r for 0 bp 2025-01-31 10:02:27,354 DEBUG chr7:45708251-47156251: Successfully fit background model for 1,418,662 bp. Use segment r for 0 bp 2025-01-31 10:02:27,474 DEBUG chr7:47156251-48330501: Successfully fit background model for 939,095 bp. Use segment r for 0 bp 2025-01-31 10:02:27,637 DEBUG chr7:48330501-49955751: Successfully fit background model for 1,522,431 bp. Use segment r for 0 bp 2025-01-31 10:02:27,839 DEBUG chr6:46371751-57690251: Successfully fit background model for 10,488,216 bp. Use segment r for 6,246 bp 2025-01-31 10:02:27,875 DEBUG chr10:16903751-31854751: Successfully fit background model for 13,665,704 bp. Use segment r for 7,443 bp 2025-01-31 10:02:28,308 DEBUG chr7:49955751-55492751: Successfully fit background model for 4,861,850 bp. Use segment r for 0 bp 2025-01-31 10:02:28,433 DEBUG chr7:55492751-56632251: Successfully fit background model for 996,730 bp. Use segment r for 0 bp 2025-01-31 10:02:28,790 DEBUG chr10:31854751-40101751: Successfully fit background model for 7,479,332 bp. Use segment r for 0 bp 2025-01-31 10:02:29,133 DEBUG chr10:40101751-43548751: Successfully fit background model for 3,309,532 bp. Use segment r for 0 bp 2025-01-31 10:02:29,384 DEBUG chr6:57690251-66954751: Successfully fit background model for 8,206,277 bp. Use segment r for 0 bp 2025-01-31 10:02:29,477 DEBUG chr10:43548751-46907751: Successfully fit background model for 3,121,970 bp. Use segment r for 0 bp 2025-01-31 10:02:29,515 DEBUG chr6:66954751-68088501: Successfully fit background model for 1,007,924 bp. Use segment r for 0 bp 2025-01-31 10:02:29,785 DEBUG chr6:68088501-70709501: Successfully fit background model for 2,028,441 bp. Use segment r for 0 bp 2025-01-31 10:02:29,863 DEBUG chr7:56632251-63886751: Successfully fit background model for 6,016,403 bp. Use segment r for 2,725 bp 2025-01-31 10:02:29,932 DEBUG chr10:46907751-49784751: Successfully fit background model for 2,519,816 bp. Use segment r for 3,448 bp 2025-01-31 10:02:30,145 DEBUG chr6:70709501-74315251: Successfully fit background model for 3,395,709 bp. Use segment r for 0 bp 2025-01-31 10:02:30,529 DEBUG chr7:63886751-69009251: Successfully fit background model for 4,860,933 bp. Use segment r for 0 bp 2025-01-31 10:02:31,041 DEBUG chr6:74315251-79579001: Successfully fit background model for 4,732,308 bp. Use segment r for 2,717 bp 2025-01-31 10:02:31,070 DEBUG chr7:69009251-73516251: Successfully fit background model for 4,212,131 bp. Use segment r for 0 bp 2025-01-31 10:02:31,334 DEBUG chr7:73516251-76208751: Successfully fit background model for 2,472,614 bp. Use segment r for 0 bp 2025-01-31 10:02:31,377 DEBUG chr6:79579001-82996251: Successfully fit background model for 3,112,763 bp. Use segment r for 0 bp 2025-01-31 10:02:31,442 DEBUG chr6:82996251-83439751: Successfully fit background model for 435,531 bp. Use segment r for 0 bp 2025-01-31 10:02:31,506 DEBUG chr7:76208751-77968751: Successfully fit background model for 1,611,135 bp. Use segment r for 0 bp 2025-01-31 10:02:31,650 DEBUG chr7:77968751-79240501: Successfully fit background model for 1,230,749 bp. Use segment r for 0 bp 2025-01-31 10:02:31,686 DEBUG chr6:83439751-85233751: Successfully fit background model for 1,716,943 bp. Use segment r for 0 bp 2025-01-31 10:02:31,809 DEBUG chr7:79240501-80853251: Successfully fit background model for 1,573,370 bp. Use segment r for 0 bp 2025-01-31 10:02:31,905 DEBUG chr10:49784751-58312251: Successfully fit background model for 7,251,894 bp. Use segment r for 12,122 bp 2025-01-31 10:02:32,266 DEBUG chr7:80853251-84834251: Successfully fit background model for 3,757,445 bp. Use segment r for 0 bp 2025-01-31 10:02:32,397 DEBUG chr6:85233751-91440251: Successfully fit background model for 5,811,273 bp. Use segment r for 0 bp 2025-01-31 10:02:32,536 DEBUG chr10:58312251-64205251: Successfully fit background model for 5,643,117 bp. Use segment r for 0 bp 2025-01-31 10:02:32,614 DEBUG chr7:84834251-88502251: Successfully fit background model for 3,254,612 bp. Use segment r for 0 bp 2025-01-31 10:02:32,817 DEBUG chr7:88502251-90543751: Successfully fit background model for 1,856,095 bp. Use segment r for 0 bp 2025-01-31 10:02:32,829 DEBUG chr10:64205251-65804751: Successfully fit background model for 1,377,511 bp. Use segment r for 87,257 bp 2025-01-31 10:02:32,975 DEBUG chr7:90543751-92139251: Successfully fit background model for 1,495,575 bp. Use segment r for 0 bp 2025-01-31 10:02:33,094 DEBUG chr7:92139251-93182251: Successfully fit background model for 948,271 bp. Use segment r for 0 bp 2025-01-31 10:02:33,344 DEBUG chr7:93182251-95808001: Successfully fit background model for 2,350,512 bp. Use segment r for 0 bp 2025-01-31 10:02:33,557 DEBUG chr7:95808001-98047751: Successfully fit background model for 2,118,369 bp. Use segment r for 0 bp 2025-01-31 10:02:33,716 DEBUG chr10:65804751-71600751: Successfully fit background model for 5,440,793 bp. Use segment r for 1,971 bp 2025-01-31 10:02:34,076 DEBUG chr7:98047751-103089251: Successfully fit background model for 4,865,424 bp. Use segment r for 0 bp 2025-01-31 10:02:34,097 DEBUG chr10:71600751-75481751: Successfully fit background model for 3,531,622 bp. Use segment r for 0 bp 2025-01-31 10:02:34,170 DEBUG chr6:91440251-101748751: Successfully fit background model for 9,843,007 bp. Use segment r for 56 bp 2025-01-31 10:02:34,490 DEBUG chr10:75481751-79643251: Successfully fit background model for 3,865,946 bp. Use segment r for 0 bp 2025-01-31 10:02:34,716 DEBUG chr10:79643251-81651251: Successfully fit background model for 1,973,276 bp. Use segment r for 0 bp 2025-01-31 10:02:35,010 DEBUG chr7:103089251-109082251: Successfully fit background model for 4,756,531 bp. Use segment r for 1,250 bp 2025-01-31 10:02:35,194 DEBUG chr7:109082251-110919751: Successfully fit background model for 1,780,035 bp. Use segment r for 0 bp 2025-01-31 10:02:35,254 DEBUG chr6:101748751-112819751: Successfully fit background model for 10,014,032 bp. Use segment r for 0 bp 2025-01-31 10:02:35,366 DEBUG chr6:112819751-113684751: Successfully fit background model for 847,563 bp. Use segment r for 0 bp 2025-01-31 10:02:36,068 DEBUG chr10:81651251-91081501: Successfully fit background model for 8,459,134 bp. Use segment r for 0 bp 2025-01-31 10:02:36,103 DEBUG chr10:91081501-91209251: Successfully fit background model for 124,324 bp. Use segment r for 0 bp 2025-01-31 10:02:36,341 DEBUG chr10:91209251-93031751: Successfully fit background model for 1,737,880 bp. Use segment r for 0 bp 2025-01-31 10:02:36,423 DEBUG chr10:93031751-93796751: Successfully fit background model for 732,613 bp. Use segment r for 0 bp 2025-01-31 10:02:37,177 DEBUG chr10:93796751-100663751: Successfully fit background model for 6,413,930 bp. Use segment r for 0 bp 2025-01-31 10:02:37,421 DEBUG chr7:110919751-126247751: Successfully fit background model for 14,632,026 bp. Use segment r for 0 bp 2025-01-31 10:02:37,641 DEBUG chr7:126247751-128236751: Successfully fit background model for 1,913,834 bp. Use segment r for 0 bp 2025-01-31 10:02:37,839 DEBUG chr10:100663751-107016751: Successfully fit background model for 5,717,556 bp. Use segment r for 0 bp 2025-01-31 10:02:37,948 DEBUG chr6:113684751-124660251: Successfully fit background model for 9,811,629 bp. Use segment r for 32 bp 2025-01-31 10:02:38,034 DEBUG chr6:124660251-125255751: Successfully fit background model for 570,801 bp. Use segment r for 0 bp 2025-01-31 10:02:38,493 DEBUG chr6:125255751-128834751: Successfully fit background model for 3,436,819 bp. Use segment r for 0 bp 2025-01-31 10:02:38,751 DEBUG chr6:128834751-131517751: Successfully fit background model for 2,257,884 bp. Use segment r for 0 bp 2025-01-31 10:02:38,768 DEBUG chr10:107016751-113395751: Successfully fit background model for 5,935,685 bp. Use segment r for 672 bp 2025-01-31 10:02:39,031 DEBUG chr6:131517751-133460501: Successfully fit background model for 1,544,797 bp. Use segment r for 327 bp 2025-01-31 10:02:39,183 DEBUG chr6:133460501-134790251: Successfully fit background model for 1,190,913 bp. Use segment r for 0 bp 2025-01-31 10:02:39,205 DEBUG chr6:134790251-134947751: Successfully fit background model for 154,235 bp. Use segment r for 0 bp 2025-01-31 10:02:39,611 DEBUG chr6:134947751-138833251: Successfully fit background model for 3,708,559 bp. Use segment r for 0 bp 2025-01-31 10:02:39,907 DEBUG chr8:3072500-4781251: Successfully fit background model for 1,498,111 bp. Use segment r for 0 bp 2025-01-31 10:02:40,044 DEBUG chr7:128236751-140821251: Successfully fit background model for 12,018,157 bp. Use segment r for 0 bp 2025-01-31 10:02:40,139 DEBUG chr7:140821251-141489251: Successfully fit background model for 653,305 bp. Use segment r for 0 bp 2025-01-31 10:02:40,163 DEBUG chr10:113395751-123757751: Successfully fit background model for 9,733,052 bp. Use segment r for 0 bp 2025-01-31 10:02:40,473 DEBUG chr10:123757751-126894251: Successfully fit background model for 2,911,882 bp. Use segment r for 0 bp 2025-01-31 10:02:40,593 DEBUG chr6:138833251-146576751: Successfully fit background model for 7,229,191 bp. Use segment r for 0 bp 2025-01-31 10:02:40,618 DEBUG chr7:141489251-145441459: Successfully fit background model for 3,679,740 bp. Use segment r for 0 bp 2025-01-31 10:02:40,659 DEBUG chr10:126894251-128764251: Successfully fit background model for 1,815,973 bp. Use segment r for 0 bp 2025-01-31 10:02:40,798 DEBUG chr8:4781251-9718251: Successfully fit background model for 4,477,077 bp. Use segment r for 63 bp 2025-01-31 10:02:40,854 DEBUG chr10:128764251-130694993: Successfully fit background model for 1,539,219 bp. Use segment r for 0 bp 2025-01-31 10:02:40,900 DEBUG chr6:146576751-149736546: Successfully fit background model for 2,811,752 bp. Use segment r for 0 bp 2025-01-31 10:02:41,416 DEBUG chr8:9718251-15360751: Successfully fit background model for 5,454,757 bp. Use segment r for 0 bp 2025-01-31 10:02:41,825 DEBUG chr8:15360751-17742251: Successfully fit background model for 2,150,653 bp. Use segment r for 7,500 bp 2025-01-31 10:02:43,370 DEBUG chr8:17742251-25591751: Successfully fit background model for 5,768,676 bp. Use segment r for 30,142 bp 2025-01-31 10:02:43,588 DEBUG chr8:25591751-27732001: Successfully fit background model for 2,007,903 bp. Use segment r for 0 bp 2025-01-31 10:02:43,924 DEBUG chr14:3038000-5126501: Successfully fit background model for 56,404 bp. Use segment r for 14,756 bp 2025-01-31 10:02:44,391 DEBUG chr8:27732001-33594751: Successfully fit background model for 5,308,156 bp. Use segment r for 0 bp 2025-01-31 10:02:44,692 DEBUG chr8:33594751-36629751: Successfully fit background model for 2,888,300 bp. Use segment r for 0 bp 2025-01-31 10:02:45,654 DEBUG chr14:5841000-13941751: Successfully fit background model for 5,981,064 bp. Use segment r for 14,387 bp 2025-01-31 10:02:45,960 DEBUG chr8:36629751-43664501: Successfully fit background model for 6,242,489 bp. Use segment r for 16,007 bp 2025-01-31 10:02:46,224 DEBUG chr14:13941751-19700251: Successfully fit background model for 4,952,653 bp. Use segment r for 0 bp 2025-01-31 10:02:46,463 DEBUG chr8:43664501-48852751: Successfully fit background model for 4,880,799 bp. Use segment r for 0 bp 2025-01-31 10:02:46,473 DEBUG chr14:19700251-21856751: Successfully fit background model for 2,086,824 bp. Use segment r for 0 bp 2025-01-31 10:02:46,938 DEBUG chr8:48852751-53867251: Successfully fit background model for 4,583,209 bp. Use segment r for 0 bp 2025-01-31 10:02:47,456 DEBUG chr8:53867251-57958751: Successfully fit background model for 3,374,545 bp. Use segment r for 0 bp 2025-01-31 10:02:47,461 DEBUG chr14:21856751-29859751: Successfully fit background model for 7,227,249 bp. Use segment r for 0 bp 2025-01-31 10:02:47,680 DEBUG chr14:29859751-31954751: Successfully fit background model for 2,039,313 bp. Use segment r for 0 bp 2025-01-31 10:02:47,738 DEBUG chr8:57958751-60858251: Successfully fit background model for 2,510,360 bp. Use segment r for 0 bp 2025-01-31 10:02:48,007 DEBUG chr14:31954751-35180251: Successfully fit background model for 3,105,449 bp. Use segment r for 0 bp 2025-01-31 10:02:48,007 DEBUG chr8:60858251-62844251: Successfully fit background model for 1,856,646 bp. Use segment r for 0 bp 2025-01-31 10:02:48,143 DEBUG chr8:62844251-64171501: Successfully fit background model for 1,178,351 bp. Use segment r for 0 bp 2025-01-31 10:02:48,408 DEBUG chr14:35180251-37258001: Successfully fit background model for 1,877,568 bp. Use segment r for 3,176 bp 2025-01-31 10:02:48,603 DEBUG chr8:64171501-67890251: Successfully fit background model for 3,293,601 bp. Use segment r for 0 bp 2025-01-31 10:02:48,745 DEBUG chr14:37258001-40544251: Successfully fit background model for 2,955,518 bp. Use segment r for 0 bp 2025-01-31 10:02:48,813 DEBUG chr14:40544251-41123251: Successfully fit background model for 510,442 bp. Use segment r for 0 bp 2025-01-31 10:02:48,889 DEBUG chr8:67890251-69789251: Successfully fit background model for 1,646,783 bp. Use segment r for 2,025 bp 2025-01-31 10:02:49,056 DEBUG chr8:69789251-71492251: Successfully fit background model for 1,556,424 bp. Use segment r for 0 bp 2025-01-31 10:02:49,188 DEBUG chr8:71492251-72539251: Successfully fit background model for 927,574 bp. Use segment r for 0 bp 2025-01-31 10:02:49,502 DEBUG chr14:41123251-45305251: Successfully fit background model for 1,313,398 bp. Use segment r for 15,136 bp 2025-01-31 10:02:50,270 DEBUG chr14:45305251-51982751: Successfully fit background model for 6,081,798 bp. Use segment r for 0 bp 2025-01-31 10:02:50,332 DEBUG chr14:51982751-52432751: Successfully fit background model for 429,635 bp. Use segment r for 0 bp 2025-01-31 10:02:50,634 DEBUG chr14:52432751-54360251: Successfully fit background model for 1,130,398 bp. Use segment r for 93 bp 2025-01-31 10:02:50,764 DEBUG chr14:54360251-55634751: Successfully fit background model for 1,220,626 bp. Use segment r for 0 bp 2025-01-31 10:02:51,507 DEBUG chr8:72539251-83404751: Successfully fit background model for 9,861,667 bp. Use segment r for 3,033 bp 2025-01-31 10:02:51,646 DEBUG chr8:83404751-84567751: Successfully fit background model for 1,123,043 bp. Use segment r for 0 bp 2025-01-31 10:02:51,712 DEBUG chr8:84567751-85100751: Successfully fit background model for 524,207 bp. Use segment r for 0 bp 2025-01-31 10:02:53,239 DEBUG chr14:55634751-71229251: Successfully fit background model for 14,411,617 bp. Use segment r for 0 bp 2025-01-31 10:02:53,290 DEBUG chr8:85100751-94155751: Successfully fit background model for 8,649,324 bp. Use segment r for 0 bp 2025-01-31 10:02:53,425 DEBUG chr14:71229251-72791251: Successfully fit background model for 1,444,159 bp. Use segment r for 0 bp 2025-01-31 10:02:53,520 DEBUG chr8:94155751-96320751: Successfully fit background model for 2,059,433 bp. Use segment r for 0 bp 2025-01-31 10:02:53,888 DEBUG chr9:3002500-13202251: Successfully fit background model for 8,929,669 bp. Use segment r for 376 bp 2025-01-31 10:02:54,082 DEBUG chr9:13202251-15014751: Successfully fit background model for 1,631,707 bp. Use segment r for 0 bp 2025-01-31 10:02:54,104 DEBUG chr9:15014751-15180751: Successfully fit background model for 158,083 bp. Use segment r for 0 bp 2025-01-31 10:02:54,221 DEBUG chr14:72791251-79891251: Successfully fit background model for 6,678,518 bp. Use segment r for 0 bp 2025-01-31 10:02:54,229 DEBUG chr8:96320751-102865001: Successfully fit background model for 5,985,903 bp. Use segment r for 0 bp 2025-01-31 10:02:54,406 DEBUG chr8:102865001-104533751: Successfully fit background model for 1,581,311 bp. Use segment r for 0 bp 2025-01-31 10:02:54,644 DEBUG chr9:15180751-20580751: Successfully fit background model for 4,781,268 bp. Use segment r for 0 bp 2025-01-31 10:02:54,689 DEBUG chr8:104533751-107376751: Successfully fit background model for 2,663,081 bp. Use segment r for 0 bp 2025-01-31 10:02:54,815 DEBUG chr9:20580751-22306751: Successfully fit background model for 1,657,554 bp. Use segment r for 0 bp 2025-01-31 10:02:55,034 DEBUG chr8:107376751-110708251: Successfully fit background model for 3,237,506 bp. Use segment r for 0 bp 2025-01-31 10:02:55,121 DEBUG chr9:22306751-25661001: Successfully fit background model for 3,083,792 bp. Use segment r for 0 bp 2025-01-31 10:02:55,123 DEBUG chr14:79891251-86149751: Successfully fit background model for 5,593,764 bp. Use segment r for 4,029 bp 2025-01-31 10:02:55,238 DEBUG chr8:110708251-112632251: Successfully fit background model for 1,860,177 bp. Use segment r for 0 bp 2025-01-31 10:02:55,278 DEBUG chr14:86149751-87639751: Successfully fit background model for 1,394,235 bp. Use segment r for 0 bp 2025-01-31 10:02:55,684 DEBUG chr9:25661001-30033251: Successfully fit background model for 4,158,765 bp. Use segment r for 0 bp 2025-01-31 10:02:55,943 DEBUG chr9:30033251-32832251: Successfully fit background model for 2,679,525 bp. Use segment r for 0 bp 2025-01-31 10:02:56,120 DEBUG chr9:32832251-34079751: Successfully fit background model for 1,133,899 bp. Use segment r for 0 bp 2025-01-31 10:02:56,168 DEBUG chr8:112632251-116868251: Successfully fit background model for 3,847,341 bp. Use segment r for 237,743 bp 2025-01-31 10:02:56,422 DEBUG chr8:116868251-119342751: Successfully fit background model for 2,402,070 bp. Use segment r for 0 bp 2025-01-31 10:02:56,578 DEBUG chr9:34079751-37730751: Successfully fit background model for 3,343,665 bp. Use segment r for 0 bp 2025-01-31 10:02:56,939 DEBUG chr8:119342751-124117501: Successfully fit background model for 4,569,460 bp. Use segment r for 0 bp 2025-01-31 10:02:57,085 DEBUG chr14:87639751-97917751: Successfully fit background model for 9,314,727 bp. Use segment r for 333 bp 2025-01-31 10:02:57,152 DEBUG chr9:37730751-40749251: Successfully fit background model for 2,718,548 bp. Use segment r for 5,315 bp 2025-01-31 10:02:57,168 DEBUG chr9:40749251-40822251: Successfully fit background model for 69,134 bp. Use segment r for 0 bp 2025-01-31 10:02:57,213 DEBUG chr8:124117501-126903251: Successfully fit background model for 2,696,404 bp. Use segment r for 0 bp 2025-01-31 10:02:57,454 DEBUG chr8:126903251-129401213: Successfully fit background model for 2,207,103 bp. Use segment r for 0 bp 2025-01-31 10:02:57,586 DEBUG chr9:40822251-44064251: Successfully fit background model for 3,184,389 bp. Use segment r for 0 bp 2025-01-31 10:02:57,685 DEBUG chr9:44064251-44681251: Successfully fit background model for 590,050 bp. Use segment r for 0 bp 2025-01-31 10:02:58,153 DEBUG chr14:97917751-107151251: Successfully fit background model for 8,499,718 bp. Use segment r for 0 bp 2025-01-31 10:02:59,386 DEBUG chr14:107151251-113918751: Successfully fit background model for 6,099,462 bp. Use segment r for 763 bp 2025-01-31 10:02:59,883 DEBUG chr9:44681251-56847251: Successfully fit background model for 11,624,234 bp. Use segment r for 0 bp 2025-01-31 10:03:00,156 DEBUG chr14:113918751-121257251: Successfully fit background model for 6,788,658 bp. Use segment r for 0 bp 2025-01-31 10:03:00,167 DEBUG chr9:56847251-59753251: Successfully fit background model for 2,822,334 bp. Use segment r for 0 bp 2025-01-31 10:03:00,242 DEBUG chr14:121257251-121946251: Successfully fit background model for 676,590 bp. Use segment r for 0 bp 2025-01-31 10:03:00,379 DEBUG chr9:59753251-61871251: Successfully fit background model for 2,070,827 bp. Use segment r for 0 bp 2025-01-31 10:03:00,675 DEBUG chr14:121946251-124902244: Successfully fit background model for 2,466,461 bp. Use segment r for 14,799 bp 2025-01-31 10:03:00,882 DEBUG chr9:61871251-66820251: Successfully fit background model for 4,812,395 bp. Use segment r for 0 bp 2025-01-31 10:03:02,705 DEBUG chr9:66820251-76319251: Successfully fit background model for 9,037,448 bp. Use segment r for 0 bp 2025-01-31 10:03:02,864 DEBUG chr9:76319251-77749251: Successfully fit background model for 1,344,738 bp. Use segment r for 0 bp 2025-01-31 10:03:02,980 DEBUG chr9:77749251-78928251: Successfully fit background model for 1,054,073 bp. Use segment r for 0 bp 2025-01-31 10:03:05,293 DEBUG chr9:78928251-90552751: Successfully fit background model for 10,160,768 bp. Use segment r for 3,348 bp 2025-01-31 10:03:05,671 DEBUG chr9:90552751-94523751: Successfully fit background model for 3,547,581 bp. Use segment r for 0 bp 2025-01-31 10:03:06,998 DEBUG chr9:94523751-106132751: Successfully fit background model for 11,089,314 bp. Use segment r for 0 bp 2025-01-31 10:03:07,642 DEBUG chr9:106132751-110714251: Successfully fit background model for 4,226,773 bp. Use segment r for 268 bp 2025-01-31 10:03:08,757 DEBUG chr9:110714251-119320251: Successfully fit background model for 8,130,893 bp. Use segment r for 0 bp 2025-01-31 10:03:09,255 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:04:01,134 DEBUG chr11:3101000-3204251: Successfully fit background model for 76,214 bp. Use segment r for 0 bp 2025-01-31 10:04:01,462 DEBUG chr11:3204251-6678751: Successfully fit background model for 3,340,033 bp. Use segment r for 0 bp 2025-01-31 10:04:01,676 DEBUG chr11:6678751-9150251: Successfully fit background model for 2,232,045 bp. Use segment r for 0 bp 2025-01-31 10:04:01,846 DEBUG chr11:9150251-11050251: Successfully fit background model for 1,683,031 bp. Use segment r for 0 bp 2025-01-31 10:04:01,982 DEBUG chr11:11050251-12459751: Successfully fit background model for 1,294,144 bp. Use segment r for 0 bp 2025-01-31 10:04:02,319 DEBUG chr11:12459751-16007501: Successfully fit background model for 3,125,079 bp. Use segment r for 0 bp 2025-01-31 10:04:02,440 DEBUG chr11:16007501-17295251: Successfully fit background model for 1,157,100 bp. Use segment r for 0 bp 2025-01-31 10:04:02,619 DEBUG chr11:17295251-19351751: Successfully fit background model for 1,888,293 bp. Use segment r for 0 bp 2025-01-31 10:04:03,049 DEBUG chr11:19351751-24098251: Successfully fit background model for 4,468,194 bp. Use segment r for 0 bp 2025-01-31 10:04:03,430 DEBUG chr11:24098251-28555251: Successfully fit background model for 4,010,649 bp. Use segment r for 0 bp 2025-01-31 10:04:03,887 DEBUG chr11:28555251-33840251: Successfully fit background model for 4,939,694 bp. Use segment r for 0 bp 2025-01-31 10:04:04,958 DEBUG chr11:33840251-44448251: Successfully fit background model for 9,855,791 bp. Use segment r for 0 bp 2025-01-31 10:04:05,511 DEBUG chr11:44448251-48771251: Successfully fit background model for 3,985,568 bp. Use segment r for 1,569 bp 2025-01-31 10:04:05,533 DEBUG chr11:48771251-48880251: Successfully fit background model for 105,936 bp. Use segment r for 0 bp 2025-01-31 10:04:06,235 DEBUG chr11:48880251-55550751: Successfully fit background model for 6,266,004 bp. Use segment r for 0 bp 2025-01-31 10:04:06,420 DEBUG chr11:55550751-57532251: Successfully fit background model for 1,851,725 bp. Use segment r for 0 bp 2025-01-31 10:04:06,987 DEBUG chr11:57532251-63243251: Successfully fit background model for 5,434,100 bp. Use segment r for 0 bp 2025-01-31 10:04:07,496 DEBUG chr11:63243251-68965251: Successfully fit background model for 5,516,831 bp. Use segment r for 0 bp 2025-01-31 10:04:07,523 DEBUG chr11:68965251-69127251: Successfully fit background model for 159,568 bp. Use segment r for 0 bp 2025-01-31 10:04:07,711 DEBUG chr11:69127251-71074751: Successfully fit background model for 1,890,546 bp. Use segment r for 0 bp 2025-01-31 10:04:08,073 DEBUG chr11:71074751-74825501: Successfully fit background model for 3,434,046 bp. Use segment r for 0 bp 2025-01-31 10:04:08,659 DEBUG chr11:74825501-81045751: Successfully fit background model for 6,037,178 bp. Use segment r for 0 bp 2025-01-31 10:04:08,818 DEBUG chr11:81045751-82745251: Successfully fit background model for 1,648,271 bp. Use segment r for 0 bp 2025-01-31 10:04:09,505 DEBUG chr11:82745251-89442751: Successfully fit background model for 6,429,804 bp. Use segment r for 0 bp 2025-01-31 10:04:09,854 DEBUG chr11:89442751-93506251: Successfully fit background model for 3,792,129 bp. Use segment r for 0 bp 2025-01-31 10:04:10,189 DEBUG chr11:93506251-96914751: Successfully fit background model for 3,308,760 bp. Use segment r for 0 bp 2025-01-31 10:04:10,420 DEBUG chr11:96914751-99490251: Successfully fit background model for 2,519,303 bp. Use segment r for 0 bp 2025-01-31 10:04:10,502 DEBUG chr11:99490251-100279751: Successfully fit background model for 725,683 bp. Use segment r for 0 bp 2025-01-31 10:04:10,892 DEBUG chr12:3000500-5276751: Successfully fit background model for 2,084,185 bp. Use segment r for 0 bp 2025-01-31 10:04:11,116 DEBUG chr12:5276751-6920751: Successfully fit background model for 1,475,852 bp. Use segment r for 2,050 bp 2025-01-31 10:04:11,389 DEBUG chr12:6920751-9637501: Successfully fit background model for 2,524,874 bp. Use segment r for 0 bp 2025-01-31 10:04:11,527 DEBUG chr11:100279751-108528251: Successfully fit background model for 7,974,496 bp. Use segment r for 0 bp 2025-01-31 10:04:11,723 DEBUG chr11:108528251-110538251: Successfully fit background model for 1,931,329 bp. Use segment r for 0 bp 2025-01-31 10:04:12,003 DEBUG chr11:110538251-112903251: Successfully fit background model for 2,272,114 bp. Use segment r for 0 bp 2025-01-31 10:04:12,218 DEBUG chr11:112903251-115153251: Successfully fit background model for 2,160,573 bp. Use segment r for 0 bp 2025-01-31 10:04:12,351 DEBUG chr12:9637501-15190251: Successfully fit background model for 5,002,699 bp. Use segment r for 14,992 bp 2025-01-31 10:04:12,478 DEBUG chr11:115153251-117813751: Successfully fit background model for 2,580,193 bp. Use segment r for 0 bp 2025-01-31 10:04:12,910 DEBUG chr11:117813751-122082543: Successfully fit background model for 4,033,512 bp. Use segment r for 0 bp 2025-01-31 10:04:14,434 DEBUG chr12:15190251-24562251: Successfully fit background model for 4,809,847 bp. Use segment r for 6,221 bp 2025-01-31 10:04:14,449 DEBUG chr15:3050500-5085751: Successfully fit background model for 1,732,031 bp. Use segment r for 0 bp 2025-01-31 10:04:14,480 DEBUG chr12:24562251-24855251: Successfully fit background model for 279,099 bp. Use segment r for 0 bp 2025-01-31 10:04:14,497 DEBUG chr13:3000500-21155751: Successfully fit background model for 15,919,590 bp. Use segment r for 2,659 bp 2025-01-31 10:04:14,549 DEBUG chr13:21155751-21282251: Successfully fit background model for 122,388 bp. Use segment r for 0 bp 2025-01-31 10:04:14,617 DEBUG chr13:21282251-21709751: Successfully fit background model for 393,931 bp. Use segment r for 0 bp 2025-01-31 10:04:14,659 DEBUG chr13:21709751-22052751: Successfully fit background model for 287,479 bp. Use segment r for 0 bp 2025-01-31 10:04:14,755 DEBUG chr15:5085751-8088751: Successfully fit background model for 2,741,963 bp. Use segment r for 0 bp 2025-01-31 10:04:14,779 DEBUG chr13:22052751-23264501: Successfully fit background model for 909,067 bp. Use segment r for 0 bp 2025-01-31 10:04:14,836 DEBUG chr13:23264501-23765751: Successfully fit background model for 462,359 bp. Use segment r for 0 bp 2025-01-31 10:04:14,866 DEBUG chr15:8088751-9142251: Successfully fit background model for 953,102 bp. Use segment r for 0 bp 2025-01-31 10:04:14,984 DEBUG chr13:23765751-25246251: Successfully fit background model for 1,393,778 bp. Use segment r for 0 bp 2025-01-31 10:04:15,155 DEBUG chr15:9142251-12080251: Successfully fit background model for 2,687,134 bp. Use segment r for 0 bp 2025-01-31 10:04:15,307 DEBUG chr15:12080251-13523251: Successfully fit background model for 1,393,583 bp. Use segment r for 0 bp 2025-01-31 10:04:15,421 DEBUG chr13:25246251-28011751: Successfully fit background model for 2,478,884 bp. Use segment r for 231 bp 2025-01-31 10:04:16,963 DEBUG chr13:28011751-37820251: Successfully fit background model for 8,954,730 bp. Use segment r for 0 bp 2025-01-31 10:04:17,033 DEBUG chr15:13523251-23161751: Successfully fit background model for 8,602,405 bp. Use segment r for 0 bp 2025-01-31 10:04:17,068 DEBUG chr13:37820251-38593251: Successfully fit background model for 757,932 bp. Use segment r for 0 bp 2025-01-31 10:04:17,152 DEBUG chr12:24855251-36496751: Successfully fit background model for 10,937,213 bp. Use segment r for 7,630 bp 2025-01-31 10:04:17,415 DEBUG chr15:23161751-25608251: Successfully fit background model for 2,172,826 bp. Use segment r for 10,350 bp 2025-01-31 10:04:17,476 DEBUG chr15:25608251-26001751: Successfully fit background model for 387,537 bp. Use segment r for 0 bp 2025-01-31 10:04:17,506 DEBUG chr12:36496751-39985501: Successfully fit background model for 3,208,711 bp. Use segment r for 0 bp 2025-01-31 10:04:17,589 DEBUG chr15:26001751-27147751: Successfully fit background model for 1,056,028 bp. Use segment r for 0 bp 2025-01-31 10:04:17,600 DEBUG chr13:38593251-43160751: Successfully fit background model for 4,332,206 bp. Use segment r for 0 bp 2025-01-31 10:04:17,662 DEBUG chr15:27147751-27818751: Successfully fit background model for 632,414 bp. Use segment r for 0 bp 2025-01-31 10:04:17,797 DEBUG chr12:39985501-42143751: Successfully fit background model for 1,879,949 bp. Use segment r for 133,218 bp 2025-01-31 10:04:18,014 DEBUG chr15:27818751-31204251: Successfully fit background model for 3,067,083 bp. Use segment r for 0 bp 2025-01-31 10:04:18,071 DEBUG chr15:31204251-31696251: Successfully fit background model for 477,109 bp. Use segment r for 0 bp 2025-01-31 10:04:18,265 DEBUG chr13:43160751-49343251: Successfully fit background model for 6,012,155 bp. Use segment r for 0 bp 2025-01-31 10:04:18,315 DEBUG chr15:31696251-33870751: Successfully fit background model for 1,913,161 bp. Use segment r for 0 bp 2025-01-31 10:04:18,729 DEBUG chr13:49343251-54439751: Successfully fit background model for 4,491,207 bp. Use segment r for 0 bp 2025-01-31 10:04:18,738 DEBUG chr15:33870751-38283751: Successfully fit background model for 4,103,402 bp. Use segment r for 0 bp 2025-01-31 10:04:18,752 DEBUG chr12:42143751-48885001: Successfully fit background model for 6,008,534 bp. Use segment r for 4,690 bp 2025-01-31 10:04:18,821 DEBUG chr15:38283751-39040751: Successfully fit background model for 586,555 bp. Use segment r for 0 bp 2025-01-31 10:04:18,850 DEBUG chr13:54439751-55593001: Successfully fit background model for 1,111,730 bp. Use segment r for 0 bp 2025-01-31 10:04:19,014 DEBUG chr12:48885001-51673251: Successfully fit background model for 2,469,435 bp. Use segment r for 0 bp 2025-01-31 10:04:19,085 DEBUG chr13:55593001-58111251: Successfully fit background model for 2,461,617 bp. Use segment r for 0 bp 2025-01-31 10:04:19,103 DEBUG chr12:51673251-52500751: Successfully fit background model for 762,903 bp. Use segment r for 0 bp 2025-01-31 10:04:19,356 DEBUG chr13:58111251-60867251: Successfully fit background model for 2,645,642 bp. Use segment r for 0 bp 2025-01-31 10:04:19,406 DEBUG chr15:39040751-44864501: Successfully fit background model for 5,337,777 bp. Use segment r for 0 bp 2025-01-31 10:04:19,671 DEBUG chr13:60867251-63099251: Successfully fit background model for 1,661,890 bp. Use segment r for 44,153 bp 2025-01-31 10:04:19,797 DEBUG chr13:63099251-64341251: Successfully fit background model for 1,192,950 bp. Use segment r for 0 bp 2025-01-31 10:04:19,871 DEBUG chr15:44864501-49930501: Successfully fit background model for 4,544,884 bp. Use segment r for 0 bp 2025-01-31 10:04:20,368 DEBUG chr12:52500751-59914751: Successfully fit background model for 6,678,592 bp. Use segment r for 76 bp 2025-01-31 10:04:20,588 DEBUG chr16:3101000-5280751: Successfully fit background model for 1,758,293 bp. Use segment r for 0 bp 2025-01-31 10:04:20,721 DEBUG chr12:59914751-63122751: Successfully fit background model for 2,828,652 bp. Use segment r for 0 bp 2025-01-31 10:04:20,894 DEBUG chr16:5280751-8112251: Successfully fit background model for 2,711,295 bp. Use segment r for 0 bp 2025-01-31 10:04:20,972 DEBUG chr15:49930501-57816751: Successfully fit background model for 7,198,805 bp. Use segment r for 0 bp 2025-01-31 10:04:21,002 DEBUG chr16:8112251-9103251: Successfully fit background model for 920,475 bp. Use segment r for 0 bp 2025-01-31 10:04:21,106 DEBUG chr16:9103251-9943751: Successfully fit background model for 799,320 bp. Use segment r for 0 bp 2025-01-31 10:04:21,178 DEBUG chr15:57816751-59848251: Successfully fit background model for 1,970,175 bp. Use segment r for 0 bp 2025-01-31 10:04:21,326 DEBUG chr12:63122751-69119751: Successfully fit background model for 5,375,108 bp. Use segment r for 0 bp 2025-01-31 10:04:21,584 DEBUG chr16:9943751-14525751: Successfully fit background model for 4,333,893 bp. Use segment r for 0 bp 2025-01-31 10:04:21,669 DEBUG chr13:64341251-73251251: Successfully fit background model for 6,802,733 bp. Use segment r for 21,035 bp 2025-01-31 10:04:21,763 DEBUG chr13:73251251-74004751: Successfully fit background model for 741,012 bp. Use segment r for 0 bp 2025-01-31 10:04:21,848 DEBUG chr16:14525751-17107751: Successfully fit background model for 2,257,321 bp. Use segment r for 0 bp 2025-01-31 10:04:21,860 DEBUG chr15:59848251-67118251: Successfully fit background model for 6,605,722 bp. Use segment r for 0 bp 2025-01-31 10:04:21,883 DEBUG chr15:67118251-67182751: Successfully fit background model for 61,337 bp. Use segment r for 0 bp 2025-01-31 10:04:22,050 DEBUG chr16:17107751-19028251: Successfully fit background model for 1,848,271 bp. Use segment r for 0 bp 2025-01-31 10:04:22,144 DEBUG chr16:19028251-19754751: Successfully fit background model for 565,068 bp. Use segment r for 0 bp 2025-01-31 10:04:22,220 DEBUG chr13:74004751-78162251: Successfully fit background model for 3,696,679 bp. Use segment r for 0 bp 2025-01-31 10:04:22,237 DEBUG chr13:78162251-78214251: Successfully fit background model for 51,897 bp. Use segment r for 0 bp 2025-01-31 10:04:22,548 DEBUG chr16:19754751-23242751: Successfully fit background model for 3,268,401 bp. Use segment r for 0 bp 2025-01-31 10:04:22,556 DEBUG chr13:78214251-80881751: Successfully fit background model for 2,395,277 bp. Use segment r for 0 bp 2025-01-31 10:04:22,642 DEBUG chr13:80881751-81625501: Successfully fit background model for 701,884 bp. Use segment r for 0 bp 2025-01-31 10:04:22,670 DEBUG chr13:81625501-81785251: Successfully fit background model for 149,907 bp. Use segment r for 0 bp 2025-01-31 10:04:22,880 DEBUG chr13:81785251-83748251: Successfully fit background model for 1,803,402 bp. Use segment r for 0 bp 2025-01-31 10:04:22,908 DEBUG chr15:67182751-73044251: Successfully fit background model for 5,402,685 bp. Use segment r for 47 bp 2025-01-31 10:04:23,019 DEBUG chr12:69119751-83036251: Successfully fit background model for 13,163,001 bp. Use segment r for 0 bp 2025-01-31 10:04:23,192 DEBUG chr15:73044251-75880751: Successfully fit background model for 2,659,372 bp. Use segment r for 0 bp 2025-01-31 10:04:23,292 DEBUG chr15:75880751-76795751: Successfully fit background model for 889,754 bp. Use segment r for 0 bp 2025-01-31 10:04:23,414 DEBUG chr12:83036251-87263751: Successfully fit background model for 4,121,167 bp. Use segment r for 0 bp 2025-01-31 10:04:23,553 DEBUG chr16:23242751-29215251: Successfully fit background model for 5,610,318 bp. Use segment r for 251 bp 2025-01-31 10:04:23,612 DEBUG chr13:83748251-90902751: Successfully fit background model for 6,392,006 bp. Use segment r for 0 bp 2025-01-31 10:04:23,865 DEBUG chr15:76795751-82380751: Successfully fit background model for 5,327,456 bp. Use segment r for 0 bp 2025-01-31 10:04:24,134 DEBUG chr12:87263751-92301751: Successfully fit background model for 4,283,909 bp. Use segment r for 789 bp 2025-01-31 10:04:24,502 DEBUG chr15:82380751-88732751: Successfully fit background model for 6,110,052 bp. Use segment r for 0 bp 2025-01-31 10:04:24,599 DEBUG chr15:88732751-89625751: Successfully fit background model for 853,395 bp. Use segment r for 0 bp 2025-01-31 10:04:24,870 DEBUG chr16:29215251-39123751: Successfully fit background model for 9,462,819 bp. Use segment r for 0 bp 2025-01-31 10:04:24,881 DEBUG chr15:89625751-92649751: Successfully fit background model for 2,835,566 bp. Use segment r for 0 bp 2025-01-31 10:04:24,949 DEBUG chr13:90902751-101687251: Successfully fit background model for 10,139,460 bp. Use segment r for 0 bp 2025-01-31 10:04:25,077 DEBUG chr12:92301751-97125251: Successfully fit background model for 4,324,945 bp. Use segment r for 3,707 bp 2025-01-31 10:04:25,233 DEBUG chr12:97125251-98731751: Successfully fit background model for 1,473,618 bp. Use segment r for 0 bp 2025-01-31 10:04:25,291 DEBUG chr16:39123751-43375751: Successfully fit background model for 3,969,699 bp. Use segment r for 0 bp 2025-01-31 10:04:25,479 DEBUG chr16:43375751-45199751: Successfully fit background model for 1,708,197 bp. Use segment r for 0 bp 2025-01-31 10:04:25,952 DEBUG chr16:45199751-49763251: Successfully fit background model for 4,068,618 bp. Use segment r for 0 bp 2025-01-31 10:04:26,007 DEBUG chr13:101687251-111683751: Successfully fit background model for 9,285,427 bp. Use segment r for 0 bp 2025-01-31 10:04:26,070 DEBUG chr16:49763251-50893251: Successfully fit background model for 1,090,816 bp. Use segment r for 0 bp 2025-01-31 10:04:26,120 DEBUG chr12:98731751-104933251: Successfully fit background model for 5,809,983 bp. Use segment r for 7,746 bp 2025-01-31 10:04:26,128 DEBUG chr13:111683751-112806751: Successfully fit background model for 1,085,744 bp. Use segment r for 0 bp 2025-01-31 10:04:26,147 DEBUG chr12:104933251-105083251: Successfully fit background model for 147,089 bp. Use segment r for 0 bp 2025-01-31 10:04:26,359 DEBUG chr13:112806751-115260751: Successfully fit background model for 2,323,696 bp. Use segment r for 0 bp 2025-01-31 10:04:26,553 DEBUG chr16:50893251-55819251: Successfully fit background model for 4,389,793 bp. Use segment r for 0 bp 2025-01-31 10:04:26,684 DEBUG chr12:105083251-110375751: Successfully fit background model for 5,113,132 bp. Use segment r for 0 bp 2025-01-31 10:04:26,766 DEBUG chr13:115260751-119362751: Successfully fit background model for 3,746,032 bp. Use segment r for 0 bp 2025-01-31 10:04:26,801 DEBUG chr17:3000000-15938251: Successfully fit background model for 10,894,179 bp. Use segment r for 13,422 bp 2025-01-31 10:04:26,828 DEBUG chr15:92649751-98501751: Successfully fit background model for 5,544,496 bp. Use segment r for 0 bp 2025-01-31 10:04:26,882 DEBUG chr13:119362751-120421639: Successfully fit background model for 466,107 bp. Use segment r for 0 bp 2025-01-31 10:04:26,931 DEBUG chr16:55819251-59762251: Successfully fit background model for 3,513,093 bp. Use segment r for 0 bp 2025-01-31 10:04:26,932 DEBUG chr12:110375751-113030251: Successfully fit background model for 2,582,150 bp. Use segment r for 0 bp 2025-01-31 10:04:27,566 DEBUG chr16:59762251-64351251: Successfully fit background model for 4,092,544 bp. Use segment r for 435 bp 2025-01-31 10:04:27,578 DEBUG chr17:15938251-23531751: Successfully fit background model for 6,255,445 bp. Use segment r for 0 bp 2025-01-31 10:04:27,636 DEBUG chr12:113030251-120129022: Successfully fit background model for 6,162,272 bp. Use segment r for 0 bp 2025-01-31 10:04:28,147 DEBUG chr17:23531751-29395751: Successfully fit background model for 5,675,666 bp. Use segment r for 0 bp 2025-01-31 10:04:28,497 DEBUG chr15:98501751-103363251: Successfully fit background model for 4,707,964 bp. Use segment r for 0 bp 2025-01-31 10:04:28,563 DEBUG chr17:29395751-33816751: Successfully fit background model for 4,142,993 bp. Use segment r for 0 bp 2025-01-31 10:04:28,582 DEBUG chr15:103363251-104043685: Successfully fit background model for 433,599 bp. Use segment r for 0 bp 2025-01-31 10:04:28,591 DEBUG chr17:33816751-33968751: Successfully fit background model for 139,011 bp. Use segment r for 0 bp 2025-01-31 10:04:28,964 DEBUG chr17:33968751-37085751: Successfully fit background model for 2,797,014 bp. Use segment r for 0 bp 2025-01-31 10:04:29,934 DEBUG chr17:37085751-44372751: Successfully fit background model for 6,380,057 bp. Use segment r for 0 bp 2025-01-31 10:04:30,061 DEBUG chr17:44372751-45551251: Successfully fit background model for 1,131,839 bp. Use segment r for 0 bp 2025-01-31 10:04:30,343 DEBUG chr17:45551251-48600251: Successfully fit background model for 2,950,438 bp. Use segment r for 0 bp 2025-01-31 10:04:31,280 DEBUG chr17:48600251-55944251: Successfully fit background model for 6,706,059 bp. Use segment r for 0 bp 2025-01-31 10:04:31,425 DEBUG chr17:55944251-57351751: Successfully fit background model for 1,378,765 bp. Use segment r for 0 bp 2025-01-31 10:04:31,892 DEBUG chr17:57351751-62489251: Successfully fit background model for 4,611,030 bp. Use segment r for 0 bp 2025-01-31 10:04:33,768 DEBUG chr16:64351251-87341751: Successfully fit background model for 20,884,034 bp. Use segment r for 6,399 bp 2025-01-31 10:04:34,042 DEBUG chr16:87341751-89763251: Successfully fit background model for 2,257,808 bp. Use segment r for 0 bp 2025-01-31 10:04:34,575 DEBUG chr16:89763251-94486251: Successfully fit background model for 4,578,833 bp. Use segment r for 0 bp 2025-01-31 10:04:34,783 DEBUG chr17:62489251-81190251: Successfully fit background model for 17,582,784 bp. Use segment r for 0 bp 2025-01-31 10:04:34,919 DEBUG chr16:94486251-98207768: Successfully fit background model for 3,464,481 bp. Use segment r for 0 bp 2025-01-31 10:04:34,938 DEBUG chr17:81190251-82638751: Successfully fit background model for 1,314,224 bp. Use segment r for 0 bp 2025-01-31 10:04:35,623 DEBUG chr17:82638751-89092251: Successfully fit background model for 6,193,294 bp. Use segment r for 0 bp 2025-01-31 10:04:36,251 DEBUG chr17:89092251-94987271: Successfully fit background model for 5,237,676 bp. Use segment r for 0 bp 2025-01-31 10:05:28,737 DEBUG chr18:3001000-16107001: Successfully fit background model for 11,890,251 bp. Use segment r for 3,176 bp 2025-01-31 10:05:28,953 DEBUG chr18:16107001-18207751: Successfully fit background model for 1,892,492 bp. Use segment r for 0 bp 2025-01-31 10:05:30,284 DEBUG chr18:18207751-27954751: Successfully fit background model for 8,976,297 bp. Use segment r for 0 bp 2025-01-31 10:05:30,793 DEBUG chr18:27954751-31608251: Successfully fit background model for 3,358,815 bp. Use segment r for 678 bp 2025-01-31 10:05:31,068 DEBUG chr18:31608251-34396751: Successfully fit background model for 2,585,909 bp. Use segment r for 0 bp 2025-01-31 10:05:31,290 DEBUG chr18:34396751-36811751: Successfully fit background model for 2,359,127 bp. Use segment r for 0 bp 2025-01-31 10:05:31,393 DEBUG chr18:36811751-37837751: Successfully fit background model for 895,218 bp. Use segment r for 0 bp 2025-01-31 10:05:31,452 DEBUG chr18:37837751-38294251: Successfully fit background model for 449,811 bp. Use segment r for 0 bp 2025-01-31 10:05:31,893 DEBUG chr19:3080000-5456251: Successfully fit background model for 2,243,774 bp. Use segment r for 0 bp 2025-01-31 10:05:32,099 DEBUG chr19:5456251-7569751: Successfully fit background model for 1,942,469 bp. Use segment r for 0 bp 2025-01-31 10:05:32,163 DEBUG chr19:7569751-8158751: Successfully fit background model for 445,764 bp. Use segment r for 0 bp 2025-01-31 10:05:32,492 DEBUG chr19:8158751-10986751: Successfully fit background model for 2,371,742 bp. Use segment r for 0 bp 2025-01-31 10:05:32,559 DEBUG chr19:10986751-11577251: Successfully fit background model for 523,704 bp. Use segment r for 0 bp 2025-01-31 10:05:32,609 DEBUG chr19:11577251-12018251: Successfully fit background model for 411,159 bp. Use segment r for 0 bp 2025-01-31 10:05:33,010 DEBUG chr18:38294251-48637251: Successfully fit background model for 9,607,046 bp. Use segment r for 0 bp 2025-01-31 10:05:33,162 DEBUG chr19:12018251-15570251: Successfully fit background model for 3,204,583 bp. Use segment r for 16,652 bp 2025-01-31 10:05:33,335 DEBUG chr19:15570251-17418251: Successfully fit background model for 1,768,218 bp. Use segment r for 0 bp 2025-01-31 10:05:34,003 DEBUG chr19:17418251-22689251: Successfully fit background model for 4,908,067 bp. Use segment r for 0 bp 2025-01-31 10:05:34,224 DEBUG chr19:22689251-25023751: Successfully fit background model for 2,250,747 bp. Use segment r for 0 bp 2025-01-31 10:05:34,411 DEBUG chr19:25023751-27079501: Successfully fit background model for 1,941,009 bp. Use segment r for 0 bp 2025-01-31 10:05:34,466 DEBUG chr18:48637251-56552251: Successfully fit background model for 7,281,826 bp. Use segment r for 11,289 bp 2025-01-31 10:05:34,829 DEBUG chr18:56552251-60461751: Successfully fit background model for 3,640,984 bp. Use segment r for 0 bp 2025-01-31 10:05:34,946 DEBUG chr18:60461751-61633251: Successfully fit background model for 1,147,562 bp. Use segment r for 0 bp 2025-01-31 10:05:35,018 DEBUG chr19:27079501-33103751: Successfully fit background model for 5,767,942 bp. Use segment r for 0 bp 2025-01-31 10:05:35,195 DEBUG chr18:61633251-63728251: Successfully fit background model for 1,990,240 bp. Use segment r for 0 bp 2025-01-31 10:05:35,391 DEBUG chr19:33103751-35760251: Successfully fit background model for 2,339,736 bp. Use segment r for 507 bp 2025-01-31 10:05:35,527 DEBUG chr18:63728251-67203001: Successfully fit background model for 3,332,305 bp. Use segment r for 0 bp 2025-01-31 10:05:35,583 DEBUG chr18:67203001-67654251: Successfully fit background model for 443,138 bp. Use segment r for 0 bp 2025-01-31 10:05:36,046 DEBUG chr19:35760251-41799751: Successfully fit background model for 5,562,122 bp. Use segment r for 0 bp 2025-01-31 10:05:36,335 DEBUG chr18:67654251-74988251: Successfully fit background model for 6,849,042 bp. Use segment r for 0 bp 2025-01-31 10:05:36,859 DEBUG chr19:41799751-48724251: Successfully fit background model for 6,695,029 bp. Use segment r for 0 bp 2025-01-31 10:05:37,135 DEBUG chr19:48724251-51585251: Successfully fit background model for 2,639,876 bp. Use segment r for 0 bp 2025-01-31 10:05:37,308 DEBUG chr19:51585251-53247751: Successfully fit background model for 1,544,027 bp. Use segment r for 0 bp 2025-01-31 10:05:37,363 DEBUG chr19:53247751-53759251: Successfully fit background model for 497,265 bp. Use segment r for 0 bp 2025-01-31 10:05:37,643 DEBUG chr18:74988251-84969751: Successfully fit background model for 9,401,997 bp. Use segment r for 0 bp 2025-01-31 10:05:38,144 DEBUG chr19:53759251-61431566: Successfully fit background model for 7,272,345 bp. Use segment r for 0 bp 2025-01-31 10:05:38,182 DEBUG chr18:84969751-90702639: Successfully fit background model for 4,862,496 bp. Use segment r for 0 bp 2025-01-31 10:06:47,007 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:06:47,008 INFO Calculating per-bp p-values 2025-01-31 10:06:47,010 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:06:47,056 DEBUG chr1: Calculating p-values 2025-01-31 10:06:47,059 DEBUG chr3: Calculating p-values 2025-01-31 10:06:47,060 DEBUG chr5: Calculating p-values 2025-01-31 10:06:47,061 DEBUG chr2: Calculating p-values 2025-01-31 10:06:47,061 DEBUG chr4: Calculating p-values 2025-01-31 10:06:47,061 DEBUG chrX: Calculating p-values 2025-01-31 10:07:15,644 DEBUG Saving p-values for chrX 2025-01-31 10:07:19,194 DEBUG Saving p-values for chr3 2025-01-31 10:07:21,471 DEBUG Saving p-values for chr5 2025-01-31 10:07:21,604 DEBUG Saving p-values for chr4 2025-01-31 10:07:28,234 DEBUG Saving p-values for chr2 2025-01-31 10:07:30,525 DEBUG Saving p-values for chr1 2025-01-31 10:07:43,657 DEBUG chr6: Calculating p-values 2025-01-31 10:07:50,648 DEBUG chr7: Calculating p-values 2025-01-31 10:07:50,911 DEBUG chr10: Calculating p-values 2025-01-31 10:07:54,362 DEBUG chr8: Calculating p-values 2025-01-31 10:08:03,559 DEBUG chr14: Calculating p-values 2025-01-31 10:08:07,447 DEBUG chr9: Calculating p-values 2025-01-31 10:08:12,114 DEBUG Saving p-values for chr6 2025-01-31 10:08:20,649 DEBUG Saving p-values for chr10 2025-01-31 10:08:22,562 DEBUG Saving p-values for chr8 2025-01-31 10:08:23,616 DEBUG Saving p-values for chr7 2025-01-31 10:08:27,996 DEBUG Saving p-values for chr14 2025-01-31 10:08:32,309 DEBUG Saving p-values for chr9 2025-01-31 10:08:42,940 DEBUG chr11: Calculating p-values 2025-01-31 10:08:43,081 DEBUG chr13: Calculating p-values 2025-01-31 10:08:47,592 DEBUG chr12: Calculating p-values 2025-01-31 10:08:48,103 DEBUG chr15: Calculating p-values 2025-01-31 10:08:54,523 DEBUG chr16: Calculating p-values 2025-01-31 10:08:56,977 DEBUG chr17: Calculating p-values 2025-01-31 10:09:08,396 DEBUG Saving p-values for chr12 2025-01-31 10:09:09,042 DEBUG Saving p-values for chr13 2025-01-31 10:09:14,411 DEBUG Saving p-values for chr11 2025-01-31 10:09:15,506 DEBUG Saving p-values for chr15 2025-01-31 10:09:15,688 DEBUG Saving p-values for chr16 2025-01-31 10:09:18,000 DEBUG Saving p-values for chr17 2025-01-31 10:09:28,733 DEBUG chrY: Calculating p-values 2025-01-31 10:09:30,433 DEBUG chr18: Calculating p-values 2025-01-31 10:09:32,850 DEBUG chr19: Calculating p-values 2025-01-31 10:09:44,198 DEBUG Saving p-values for chr18 2025-01-31 10:09:45,186 DEBUG Saving p-values for chr19 2025-01-31 10:10:05,660 DEBUG Results of calc_pvals emitted. 2025-01-31 10:10:05,660 INFO Converting threshold values to bigwig 2025-01-31 10:10:05,661 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:10:22,573 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:10:53,498 INFO Converting background quantile values to bigwig 2025-01-31 10:10:53,498 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:11:28,154 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:11:58,199 INFO Calculating per-bp FDRs 2025-01-31 10:11:58,201 DEBUG AG81953: Extracting raw P-values 2025-01-31 10:12:43,052 DEBUG AG81953: Computing FDR 2025-01-31 10:13:10,733 DEBUG AG81953: Saving FDRs to parquet 2025-01-31 10:14:40,082 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:14:40,086 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:14:40,086 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:43,670 DEBUG chr5: Calling hotspots 2025-01-31 10:14:43,692 DEBUG chr4: Calling hotspots 2025-01-31 10:14:43,945 DEBUG chr3: Calling hotspots 2025-01-31 10:14:44,111 DEBUG chrX: Calling hotspots 2025-01-31 10:14:44,540 DEBUG chr2: Calling hotspots 2025-01-31 10:14:44,845 DEBUG chr1: Calling hotspots 2025-01-31 10:14:49,913 DEBUG chr5: 5140 hotspots called 2025-01-31 10:14:50,730 DEBUG chr4: 5184 hotspots called 2025-01-31 10:14:51,346 DEBUG chr3: 4046 hotspots called 2025-01-31 10:14:53,093 DEBUG chrX: 2482 hotspots called 2025-01-31 10:14:53,159 DEBUG chr6: Calling hotspots 2025-01-31 10:14:53,998 DEBUG chr7: Calling hotspots 2025-01-31 10:14:54,204 DEBUG chr10: Calling hotspots 2025-01-31 10:14:54,482 DEBUG chr2: 6323 hotspots called 2025-01-31 10:14:55,488 DEBUG chr1: 5599 hotspots called 2025-01-31 10:14:55,802 DEBUG chr8: Calling hotspots 2025-01-31 10:14:57,290 DEBUG chr14: Calling hotspots 2025-01-31 10:14:57,934 DEBUG chr9: Calling hotspots 2025-01-31 10:15:01,241 DEBUG chr6: 4172 hotspots called 2025-01-31 10:15:01,537 DEBUG chr10: 3857 hotspots called 2025-01-31 10:15:02,150 DEBUG chr8: 3786 hotspots called 2025-01-31 10:15:02,251 DEBUG chr7: 4931 hotspots called 2025-01-31 10:15:02,668 DEBUG chr14: 2683 hotspots called 2025-01-31 10:15:03,546 DEBUG chr11: Calling hotspots 2025-01-31 10:15:03,776 DEBUG chr9: 4431 hotspots called 2025-01-31 10:15:04,527 DEBUG chr13: Calling hotspots 2025-01-31 10:15:04,575 DEBUG chr15: Calling hotspots 2025-01-31 10:15:04,605 DEBUG chr12: Calling hotspots 2025-01-31 10:15:04,827 DEBUG chr16: Calling hotspots 2025-01-31 10:15:05,564 DEBUG chr17: Calling hotspots 2025-01-31 10:15:08,383 DEBUG chr11: 5793 hotspots called 2025-01-31 10:15:09,248 DEBUG chr16: 2823 hotspots called 2025-01-31 10:15:09,610 DEBUG chr15: 3223 hotspots called 2025-01-31 10:15:09,675 DEBUG chr17: 3425 hotspots called 2025-01-31 10:15:09,822 DEBUG chr12: 3050 hotspots called 2025-01-31 10:15:09,881 DEBUG chr13: 3756 hotspots called 2025-01-31 10:15:10,268 DEBUG chr18: Calling hotspots 2025-01-31 10:15:10,286 DEBUG chr19: Calling hotspots 2025-01-31 10:15:13,649 DEBUG chr19: 2571 hotspots called 2025-01-31 10:15:14,730 DEBUG chr18: 2282 hotspots called 2025-01-31 10:15:15,190 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:15,232 INFO There are 79557 hotspots called at FDR=0.05 2025-01-31 10:15:18,913 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:15:18,913 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:27,217 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:15:27,649 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:15:28,201 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:15:28,595 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:15:29,501 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:15:30,419 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:15:42,340 DEBUG chr4: 6237 peaks called 2025-01-31 10:15:43,180 DEBUG chr5: 6228 peaks called 2025-01-31 10:15:44,861 DEBUG chr3: 4922 peaks called 2025-01-31 10:15:46,774 DEBUG chrX: 2900 peaks called 2025-01-31 10:15:48,404 DEBUG chr2: 7734 peaks called 2025-01-31 10:15:49,443 DEBUG chr1: 6591 peaks called 2025-01-31 10:15:51,437 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:15:52,965 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:15:53,457 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:15:54,913 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:15:55,252 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:15:56,025 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:16:03,943 DEBUG chr6: 5020 peaks called 2025-01-31 10:16:04,438 DEBUG chr10: 4745 peaks called 2025-01-31 10:16:04,979 DEBUG chr14: 3178 peaks called 2025-01-31 10:16:05,271 DEBUG chr7: 6215 peaks called 2025-01-31 10:16:05,351 DEBUG chr8: 4704 peaks called 2025-01-31 10:16:06,094 DEBUG chr9: 5457 peaks called 2025-01-31 10:16:10,261 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:16:10,356 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:16:10,972 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:16:11,094 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:16:11,306 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:16:11,490 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:16:18,266 DEBUG chr16: 3373 peaks called 2025-01-31 10:16:20,006 DEBUG chr15: 3916 peaks called 2025-01-31 10:16:20,235 DEBUG chr17: 4335 peaks called 2025-01-31 10:16:20,950 DEBUG chr11: 7424 peaks called 2025-01-31 10:16:21,697 DEBUG chr12: 3693 peaks called 2025-01-31 10:16:21,837 DEBUG chr13: 4585 peaks called 2025-01-31 10:16:22,612 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:16:23,283 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:16:26,789 DEBUG chr19: 3315 peaks called 2025-01-31 10:16:28,861 DEBUG chr18: 2694 peaks called 2025-01-31 10:16:29,521 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:16:29,552 INFO There are 97266 peaks called at FDR=0.05 2025-01-31 10:16:31,247 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:16:31,247 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:16:35,095 DEBUG chr5: Calling hotspots 2025-01-31 10:16:35,151 DEBUG chr3: Calling hotspots 2025-01-31 10:16:35,262 DEBUG chr4: Calling hotspots 2025-01-31 10:16:35,375 DEBUG chrX: Calling hotspots 2025-01-31 10:16:35,485 DEBUG chr2: Calling hotspots 2025-01-31 10:16:35,850 DEBUG chr1: Calling hotspots 2025-01-31 10:16:44,305 DEBUG chr5: 4166 hotspots called 2025-01-31 10:16:44,863 DEBUG chr3: 3199 hotspots called 2025-01-31 10:16:45,475 DEBUG chr4: 4184 hotspots called 2025-01-31 10:16:46,030 DEBUG chrX: 1910 hotspots called 2025-01-31 10:16:46,795 DEBUG chr2: 5126 hotspots called 2025-01-31 10:16:47,903 DEBUG chr6: Calling hotspots 2025-01-31 10:16:47,988 DEBUG chr1: 4340 hotspots called 2025-01-31 10:16:48,301 DEBUG chr7: Calling hotspots 2025-01-31 10:16:48,471 DEBUG chr10: Calling hotspots 2025-01-31 10:16:48,925 DEBUG chr8: Calling hotspots 2025-01-31 10:16:49,776 DEBUG chr14: Calling hotspots 2025-01-31 10:16:50,856 DEBUG chr9: Calling hotspots 2025-01-31 10:16:54,865 DEBUG chr10: 3082 hotspots called 2025-01-31 10:16:55,016 DEBUG chr8: 3094 hotspots called 2025-01-31 10:16:55,316 DEBUG chr14: 2078 hotspots called 2025-01-31 10:16:55,607 DEBUG chr6: 3304 hotspots called 2025-01-31 10:16:55,831 DEBUG chr7: 4088 hotspots called 2025-01-31 10:16:56,679 DEBUG chr9: 3648 hotspots called 2025-01-31 10:16:57,435 DEBUG chr11: Calling hotspots 2025-01-31 10:16:57,635 DEBUG chr15: Calling hotspots 2025-01-31 10:16:57,690 DEBUG chr13: Calling hotspots 2025-01-31 10:16:57,887 DEBUG chr16: Calling hotspots 2025-01-31 10:16:58,029 DEBUG chr12: Calling hotspots 2025-01-31 10:16:58,660 DEBUG chr17: Calling hotspots 2025-01-31 10:17:02,210 DEBUG chr16: 2206 hotspots called 2025-01-31 10:17:02,564 DEBUG chr15: 2589 hotspots called 2025-01-31 10:17:02,857 DEBUG chr11: 4917 hotspots called 2025-01-31 10:17:02,864 DEBUG chr17: 2840 hotspots called 2025-01-31 10:17:02,949 DEBUG chr13: 2987 hotspots called 2025-01-31 10:17:03,106 DEBUG chr12: 2438 hotspots called 2025-01-31 10:17:03,479 DEBUG chr19: Calling hotspots 2025-01-31 10:17:03,580 DEBUG chr18: Calling hotspots 2025-01-31 10:17:04,956 DEBUG chr19: 2123 hotspots called 2025-01-31 10:17:05,528 DEBUG chr18: 1734 hotspots called 2025-01-31 10:17:06,076 DEBUG Results of call_hotspots emitted. 2025-01-31 10:17:06,122 INFO There are 64053 hotspots called at FDR=0.01 2025-01-31 10:17:09,127 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:17:09,128 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:17:17,946 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:17:18,297 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:17:18,325 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:17:18,650 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:17:19,491 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:17:20,135 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:17:26,385 DEBUG chr5: 5124 peaks called 2025-01-31 10:17:27,709 DEBUG chr4: 5091 peaks called 2025-01-31 10:17:28,094 DEBUG chr3: 3998 peaks called 2025-01-31 10:17:28,739 DEBUG chrX: 2303 peaks called 2025-01-31 10:17:29,515 DEBUG chr2: 6333 peaks called 2025-01-31 10:17:30,278 DEBUG chr1: 5240 peaks called 2025-01-31 10:17:33,791 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:17:35,039 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:17:35,088 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:17:35,446 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:17:35,509 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:17:36,562 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:17:41,941 DEBUG chr6: 4025 peaks called 2025-01-31 10:17:42,236 DEBUG chr10: 3859 peaks called 2025-01-31 10:17:42,916 DEBUG chr14: 2513 peaks called 2025-01-31 10:17:42,965 DEBUG chr8: 3938 peaks called 2025-01-31 10:17:43,541 DEBUG chr9: 4492 peaks called 2025-01-31 10:17:43,630 DEBUG chr7: 5214 peaks called 2025-01-31 10:17:48,480 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:17:48,520 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:17:48,546 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:17:48,577 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:17:48,601 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:17:49,001 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:17:56,007 DEBUG chr16: 2649 peaks called 2025-01-31 10:17:56,165 DEBUG chr17: 3624 peaks called 2025-01-31 10:17:56,775 DEBUG chr15: 3208 peaks called 2025-01-31 10:17:57,750 DEBUG chr13: 3689 peaks called 2025-01-31 10:17:58,315 DEBUG chr12: 3005 peaks called 2025-01-31 10:17:58,822 DEBUG chr11: 6321 peaks called 2025-01-31 10:17:59,413 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:17:59,837 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:18:02,333 DEBUG chr19: 2762 peaks called 2025-01-31 10:18:03,783 DEBUG chr18: 2133 peaks called 2025-01-31 10:18:04,406 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:18:04,442 INFO There are 79521 peaks called at FDR=0.01 2025-01-31 10:18:05,817 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:18:05,818 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:18:09,328 DEBUG chr5: Calling hotspots 2025-01-31 10:18:09,458 DEBUG chr4: Calling hotspots 2025-01-31 10:18:09,607 DEBUG chr3: Calling hotspots 2025-01-31 10:18:09,758 DEBUG chrX: Calling hotspots 2025-01-31 10:18:10,043 DEBUG chr2: Calling hotspots 2025-01-31 10:18:10,445 DEBUG chr1: Calling hotspots 2025-01-31 10:18:17,333 DEBUG chr4: 3549 hotspots called 2025-01-31 10:18:17,385 DEBUG chr5: 3537 hotspots called 2025-01-31 10:18:17,441 DEBUG chr3: 2675 hotspots called 2025-01-31 10:18:17,961 DEBUG chrX: 1607 hotspots called 2025-01-31 10:18:18,760 DEBUG chr2: 4265 hotspots called 2025-01-31 10:18:18,829 DEBUG chr1: 3582 hotspots called 2025-01-31 10:18:20,102 DEBUG chr10: Calling hotspots 2025-01-31 10:18:20,217 DEBUG chr7: Calling hotspots 2025-01-31 10:18:20,440 DEBUG chr6: Calling hotspots 2025-01-31 10:18:20,937 DEBUG chr8: Calling hotspots 2025-01-31 10:18:21,409 DEBUG chr14: Calling hotspots 2025-01-31 10:18:21,551 DEBUG chr9: Calling hotspots 2025-01-31 10:18:27,226 DEBUG chr10: 2594 hotspots called 2025-01-31 10:18:28,170 DEBUG chr7: 3518 hotspots called 2025-01-31 10:18:28,193 DEBUG chr8: 2656 hotspots called 2025-01-31 10:18:28,310 DEBUG chr14: 1726 hotspots called 2025-01-31 10:18:28,566 DEBUG chr6: 2755 hotspots called 2025-01-31 10:18:28,633 DEBUG chr9: 3050 hotspots called 2025-01-31 10:18:29,705 DEBUG chr11: Calling hotspots 2025-01-31 10:18:30,378 DEBUG chr15: Calling hotspots 2025-01-31 10:18:30,457 DEBUG chr16: Calling hotspots 2025-01-31 10:18:30,650 DEBUG chr17: Calling hotspots 2025-01-31 10:18:30,761 DEBUG chr13: Calling hotspots 2025-01-31 10:18:30,901 DEBUG chr12: Calling hotspots 2025-01-31 10:18:34,659 DEBUG chr16: 1767 hotspots called 2025-01-31 10:18:34,923 DEBUG chr17: 2423 hotspots called 2025-01-31 10:18:35,062 DEBUG chr11: 4252 hotspots called 2025-01-31 10:18:35,067 DEBUG chr15: 2169 hotspots called 2025-01-31 10:18:35,830 DEBUG chr12: 2029 hotspots called 2025-01-31 10:18:35,893 DEBUG chr19: Calling hotspots 2025-01-31 10:18:35,990 DEBUG chr13: 2486 hotspots called 2025-01-31 10:18:36,019 DEBUG chr18: Calling hotspots 2025-01-31 10:18:37,553 DEBUG chr19: 1852 hotspots called 2025-01-31 10:18:38,222 DEBUG chr18: 1449 hotspots called 2025-01-31 10:18:38,782 DEBUG Results of call_hotspots emitted. 2025-01-31 10:18:38,816 INFO There are 53941 hotspots called at FDR=0.001 2025-01-31 10:18:41,488 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:18:41,489 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:18:50,101 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:18:50,392 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:18:50,805 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:18:51,571 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:18:52,008 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:18:52,549 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:18:59,483 DEBUG chr5: 4325 peaks called 2025-01-31 10:19:01,008 DEBUG chr3: 3339 peaks called 2025-01-31 10:19:01,080 DEBUG chr4: 4295 peaks called 2025-01-31 10:19:02,388 DEBUG chrX: 1908 peaks called 2025-01-31 10:19:03,509 DEBUG chr2: 5264 peaks called 2025-01-31 10:19:05,311 DEBUG chr1: 4349 peaks called 2025-01-31 10:19:06,761 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:19:07,875 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:19:08,179 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:19:09,249 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:19:10,176 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:19:11,443 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:19:15,435 DEBUG chr10: 3216 peaks called 2025-01-31 10:19:16,091 DEBUG chr6: 3347 peaks called 2025-01-31 10:19:16,741 DEBUG chr7: 4452 peaks called 2025-01-31 10:19:17,085 DEBUG chr8: 3341 peaks called 2025-01-31 10:19:18,245 DEBUG chr14: 2080 peaks called 2025-01-31 10:19:19,785 DEBUG chr9: 3768 peaks called 2025-01-31 10:19:21,638 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:19:22,026 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:19:22,513 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:19:22,866 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:19:22,890 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:19:24,696 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:19:28,893 DEBUG chr16: 2154 peaks called 2025-01-31 10:19:29,007 DEBUG chr15: 2677 peaks called 2025-01-31 10:19:29,247 DEBUG chr13: 3073 peaks called 2025-01-31 10:19:29,382 DEBUG chr11: 5392 peaks called 2025-01-31 10:19:30,384 DEBUG chr12: 2473 peaks called 2025-01-31 10:19:30,668 DEBUG chr17: 3058 peaks called 2025-01-31 10:19:31,507 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:19:32,008 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:19:35,350 DEBUG chr19: 2368 peaks called 2025-01-31 10:19:37,157 DEBUG chr18: 1766 peaks called 2025-01-31 10:19:37,696 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:19:37,733 INFO There are 66645 peaks called at FDR=0.001 2025-01-31 10:19:38,853 INFO Saving density 2025-01-31 10:19:38,854 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:19:55,189 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:19:59,683 DEBUG Converting density to bigwig 2025-01-31 10:20:49,213 INFO Program finished