2025-01-31 09:31:53,923 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,926 INFO Extracting cutcounts from bam file 2025-01-31 09:34:23,130 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:23,344 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:23,346 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:23,348 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:23,347 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:23,349 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:23,349 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:25,036 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:25,121 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:25,310 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:25,322 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:25,744 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:25,897 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:26,436 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:26,645 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:26,805 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:26,827 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:26,869 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:27,364 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:27,870 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:27,885 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:27,968 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:29,414 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:29,415 INFO Total cutcounts = 23731834 2025-01-31 09:34:29,421 INFO Smoothing signal using MODWT 2025-01-31 09:34:29,423 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:29,599 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:29,602 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:29,607 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:29,608 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:29,611 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:29,617 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:00,651 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:02,796 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:06,068 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:18,168 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:40,904 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:01,109 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:02,268 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:17,755 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:19,467 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:22,286 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:28,861 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:04,664 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:54,697 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:00,006 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:01,245 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:43:27,638 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:43:27,639 INFO Estimating parameters of background model 2025-01-31 09:43:27,639 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:43:32,704 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:43:32,878 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:43:33,132 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:43:33,902 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:43:33,974 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:43:34,407 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:43:54,466 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:43:54,468 DEBUG chr3: Signal quantile: 0.992. signal threshold: 13. Best RMSEA: 0.012 2025-01-31 09:43:54,846 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:43:54,849 DEBUG chr5: Signal quantile: 0.988. signal threshold: 12. Best RMSEA: 0.011 2025-01-31 09:43:54,887 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:43:54,889 DEBUG chrX: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.011 2025-01-31 09:43:56,015 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:43:56,017 DEBUG chr4: Signal quantile: 0.989. signal threshold: 13. Best RMSEA: 0.010 2025-01-31 09:43:58,461 DEBUG chr3 total SNP count: 270035 2025-01-31 09:43:58,462 DEBUG chr3 length: 160039680 2025-01-31 09:43:58,462 DEBUG ----------------------------------------- 2025-01-31 09:43:58,462 INFO Processing SNPs in chr3 2025-01-31 09:43:58,761 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 270035)] 2025-01-31 09:43:58,891 DEBUG chr5 total SNP count: 256878 2025-01-31 09:43:58,891 DEBUG chr5 length: 151834684 2025-01-31 09:43:58,891 DEBUG ----------------------------------------- 2025-01-31 09:43:58,891 INFO Processing SNPs in chr5 2025-01-31 09:43:58,961 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:59,171 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256878)] 2025-01-31 09:43:59,361 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:59,553 DEBUG chrX total SNP count: 247653 2025-01-31 09:43:59,553 DEBUG chrX length: 171031299 2025-01-31 09:43:59,553 DEBUG ----------------------------------------- 2025-01-31 09:43:59,554 INFO Processing SNPs in chrX 2025-01-31 09:43:59,740 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:43:59,764 DEBUG chr2: Signal quantile: 0.989. signal threshold: 13. Best RMSEA: 0.012 2025-01-31 09:43:59,969 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32949), (32949, 32953), (32953, 33009), (33009, 176461), (176461, 176464), (176464, 247653)] 2025-01-31 09:44:00,014 DEBUG chr4 total SNP count: 259739 2025-01-31 09:44:00,015 DEBUG chr4 length: 156508116 2025-01-31 09:44:00,015 DEBUG ----------------------------------------- 2025-01-31 09:44:00,015 INFO Processing SNPs in chr4 2025-01-31 09:44:00,093 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:00,457 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 65485), (65485, 259739)] 2025-01-31 09:44:00,611 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:00,722 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:44:00,724 DEBUG chr1: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.011 2025-01-31 09:44:03,158 DEBUG chr2 total SNP count: 314174 2025-01-31 09:44:03,158 DEBUG chr2 length: 182113224 2025-01-31 09:44:03,158 DEBUG ----------------------------------------- 2025-01-31 09:44:03,158 INFO Processing SNPs in chr2 2025-01-31 09:44:03,679 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 306323), (306323, 314174)] 2025-01-31 09:44:03,901 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:04,225 DEBUG Segmenting atomic regions: 2025-01-31 09:44:04,238 DEBUG chr1 total SNP count: 339494 2025-01-31 09:44:04,238 DEBUG chr1 length: 195471971 2025-01-31 09:44:04,239 DEBUG ----------------------------------------- 2025-01-31 09:44:04,239 INFO Processing SNPs in chr1 2025-01-31 09:44:04,336 DEBUG Processing 1/108 atomic regions from SNP 0 to 603 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,586 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 339494)] 2025-01-31 09:44:04,827 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:05,085 DEBUG Processing 2/108 atomic regions from SNP 303 to 906 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,308 DEBUG Processing 3/108 atomic regions from SNP 606 to 1209 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,543 DEBUG Processing 4/108 atomic regions from SNP 909 to 1512 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,777 DEBUG Processing 5/108 atomic regions from SNP 1212 to 1815 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,011 DEBUG Processing 6/108 atomic regions from SNP 1515 to 2118 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,246 DEBUG Processing 7/108 atomic regions from SNP 1818 to 2421 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,475 DEBUG Processing 8/108 atomic regions from SNP 2121 to 2724 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,703 DEBUG Processing 9/108 atomic regions from SNP 2424 to 3027 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,939 DEBUG Processing 10/108 atomic regions from SNP 2727 to 3330 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,167 DEBUG Processing 11/108 atomic regions from SNP 3030 to 3633 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,411 DEBUG Processing 12/108 atomic regions from SNP 3333 to 3936 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,665 DEBUG Processing 13/108 atomic regions from SNP 3636 to 4239 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,929 DEBUG Processing 14/108 atomic regions from SNP 3939 to 4542 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,206 DEBUG Processing 15/108 atomic regions from SNP 4242 to 4845 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,482 DEBUG Processing 16/108 atomic regions from SNP 4545 to 5148 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,748 DEBUG Processing 17/108 atomic regions from SNP 4848 to 5451 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,757 DEBUG Segmenting atomic regions: 2025-01-31 09:44:08,878 DEBUG Processing 1/217 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,016 DEBUG Processing 18/108 atomic regions from SNP 5151 to 5754 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,261 DEBUG Processing 19/108 atomic regions from SNP 5454 to 6057 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,491 DEBUG Processing 20/108 atomic regions from SNP 5757 to 6360 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,701 DEBUG Processing 2/217 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,716 DEBUG Processing 21/108 atomic regions from SNP 6060 to 6663 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,932 DEBUG Processing 3/217 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,949 DEBUG Processing 22/108 atomic regions from SNP 6363 to 6966 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,167 DEBUG Processing 4/217 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,196 DEBUG Processing 23/108 atomic regions from SNP 6666 to 7269 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,430 DEBUG Processing 24/108 atomic regions from SNP 6969 to 7572 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,431 DEBUG Processing 5/217 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,668 DEBUG Processing 25/108 atomic regions from SNP 7272 to 7875 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,672 DEBUG Processing 6/217 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,903 DEBUG Processing 26/108 atomic regions from SNP 7575 to 8178 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,911 DEBUG Processing 7/217 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,134 DEBUG Processing 27/108 atomic regions from SNP 7878 to 8481 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,142 DEBUG Processing 8/217 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,361 DEBUG Processing 28/108 atomic regions from SNP 8181 to 8784 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,380 DEBUG Processing 9/217 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,584 DEBUG Processing 29/108 atomic regions from SNP 8484 to 9087 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,618 DEBUG Processing 10/217 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,812 DEBUG Processing 30/108 atomic regions from SNP 8787 to 9390 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,857 DEBUG Processing 11/217 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,050 DEBUG Processing 31/108 atomic regions from SNP 9090 to 9693 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,092 DEBUG Processing 12/217 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,273 DEBUG Processing 32/108 atomic regions from SNP 9393 to 9996 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,327 DEBUG Processing 13/217 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,494 DEBUG Processing 33/108 atomic regions from SNP 9696 to 10298 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,559 DEBUG Processing 14/217 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,716 DEBUG Processing 34/108 atomic regions from SNP 9998 to 10600 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,792 DEBUG Processing 15/217 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,955 DEBUG Processing 35/108 atomic regions from SNP 10300 to 10902 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,025 DEBUG Processing 16/217 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,203 DEBUG Processing 36/108 atomic regions from SNP 10602 to 11204 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,260 DEBUG Processing 17/217 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,452 DEBUG Processing 37/108 atomic regions from SNP 10904 to 11506 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,508 DEBUG Processing 18/217 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,711 DEBUG Processing 38/108 atomic regions from SNP 11206 to 11808 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,762 DEBUG Processing 19/217 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,970 DEBUG Processing 39/108 atomic regions from SNP 11508 to 12110 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,005 DEBUG Processing 20/217 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,231 DEBUG Processing 40/108 atomic regions from SNP 11810 to 12412 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,247 DEBUG Processing 21/217 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,484 DEBUG Processing 22/217 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,490 DEBUG Processing 41/108 atomic regions from SNP 12112 to 12714 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,717 DEBUG Processing 23/217 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,749 DEBUG Processing 42/108 atomic regions from SNP 12414 to 13016 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,945 DEBUG Processing 24/217 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,004 DEBUG Processing 43/108 atomic regions from SNP 12716 to 13318 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,173 DEBUG Processing 25/217 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,259 DEBUG Processing 44/108 atomic regions from SNP 13018 to 13620 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,405 DEBUG Processing 26/217 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,512 DEBUG Processing 45/108 atomic regions from SNP 13320 to 13922 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,638 DEBUG Processing 27/217 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,767 DEBUG Processing 46/108 atomic regions from SNP 13622 to 14224 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,875 DEBUG Processing 28/217 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,012 DEBUG Processing 47/108 atomic regions from SNP 13924 to 14526 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,109 DEBUG Processing 29/217 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,239 DEBUG Processing 48/108 atomic regions from SNP 14226 to 14828 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,339 DEBUG Processing 30/217 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,463 DEBUG Processing 49/108 atomic regions from SNP 14528 to 15130 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,592 DEBUG Processing 31/217 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,690 DEBUG Processing 50/108 atomic regions from SNP 14830 to 15432 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,839 DEBUG Processing 32/217 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,917 DEBUG Processing 51/108 atomic regions from SNP 15132 to 15734 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:17,074 DEBUG Processing 33/217 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,146 DEBUG Processing 52/108 atomic regions from SNP 15434 to 16036 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:17,307 DEBUG Processing 34/217 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,374 DEBUG Processing 53/108 atomic regions from SNP 15736 to 16338 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:17,540 DEBUG Processing 35/217 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,600 DEBUG Processing 54/108 atomic regions from SNP 16038 to 16640 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:17,780 DEBUG Processing 36/217 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,832 DEBUG Processing 55/108 atomic regions from SNP 16340 to 16942 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:18,026 DEBUG Processing 37/217 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,058 DEBUG Processing 56/108 atomic regions from SNP 16642 to 17244 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:18,269 DEBUG Processing 38/217 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,286 DEBUG Processing 57/108 atomic regions from SNP 16944 to 17546 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:18,504 DEBUG Processing 39/217 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,510 DEBUG Processing 58/108 atomic regions from SNP 17246 to 17848 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:18,734 DEBUG Processing 59/108 atomic regions from SNP 17548 to 18150 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:18,737 DEBUG Processing 40/217 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,957 DEBUG Processing 60/108 atomic regions from SNP 17850 to 18452 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:18,968 DEBUG Processing 41/217 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,177 DEBUG Processing 61/108 atomic regions from SNP 18152 to 18754 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:19,198 DEBUG Processing 42/217 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,398 DEBUG Processing 62/108 atomic regions from SNP 18454 to 19056 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:19,430 DEBUG Processing 43/217 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,625 DEBUG Processing 63/108 atomic regions from SNP 18756 to 19358 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:19,672 DEBUG Processing 44/217 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,854 DEBUG Processing 64/108 atomic regions from SNP 19058 to 19660 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:19,924 DEBUG Processing 45/217 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,080 DEBUG Processing 65/108 atomic regions from SNP 19360 to 19962 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:20,180 DEBUG Processing 46/217 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,304 DEBUG Processing 66/108 atomic regions from SNP 19662 to 20264 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:20,412 DEBUG Processing 47/217 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,525 DEBUG Processing 67/108 atomic regions from SNP 19964 to 20566 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:20,642 DEBUG Processing 48/217 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,750 DEBUG Processing 68/108 atomic regions from SNP 20266 to 20868 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:20,885 DEBUG Processing 49/217 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,981 DEBUG Processing 69/108 atomic regions from SNP 20568 to 21170 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:21,110 DEBUG Processing 50/217 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,208 DEBUG Processing 70/108 atomic regions from SNP 20870 to 21472 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:21,339 DEBUG Processing 51/217 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,430 DEBUG Processing 71/108 atomic regions from SNP 21172 to 21774 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:21,568 DEBUG Processing 52/217 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,649 DEBUG Processing 72/108 atomic regions from SNP 21474 to 22076 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:21,809 DEBUG Processing 53/217 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,904 DEBUG Processing 73/108 atomic regions from SNP 21776 to 22378 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:22,040 DEBUG Processing 54/217 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,153 DEBUG Processing 74/108 atomic regions from SNP 22078 to 22680 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:22,269 DEBUG Processing 55/217 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,372 DEBUG Processing 75/108 atomic regions from SNP 22380 to 22982 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:22,499 DEBUG Processing 56/217 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,605 DEBUG Processing 76/108 atomic regions from SNP 22682 to 23284 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:22,738 DEBUG Processing 57/217 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,838 DEBUG Processing 77/108 atomic regions from SNP 22984 to 23586 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:22,971 DEBUG Processing 58/217 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,061 DEBUG Processing 78/108 atomic regions from SNP 23286 to 23888 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:23,208 DEBUG Processing 59/217 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,284 DEBUG Processing 79/108 atomic regions from SNP 23588 to 24190 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:23,454 DEBUG Processing 60/217 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,512 DEBUG Processing 80/108 atomic regions from SNP 23890 to 24492 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:23,718 DEBUG Processing 61/217 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,745 DEBUG Processing 81/108 atomic regions from SNP 24192 to 24794 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:23,957 DEBUG Processing 62/217 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,979 DEBUG Processing 82/108 atomic regions from SNP 24494 to 25096 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:24,192 DEBUG Processing 63/217 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,210 DEBUG Processing 83/108 atomic regions from SNP 24796 to 25398 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:24,421 DEBUG Processing 64/217 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,433 DEBUG Processing 84/108 atomic regions from SNP 25098 to 25700 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:24,647 DEBUG Processing 65/217 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,666 DEBUG Processing 85/108 atomic regions from SNP 25400 to 26002 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:24,877 DEBUG Processing 66/217 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,903 DEBUG Processing 86/108 atomic regions from SNP 25702 to 26304 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:25,110 DEBUG Processing 67/217 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,152 DEBUG Processing 87/108 atomic regions from SNP 26004 to 26606 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:25,345 DEBUG Processing 68/217 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,399 DEBUG Processing 88/108 atomic regions from SNP 26306 to 26908 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:25,578 DEBUG Processing 69/217 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,640 DEBUG Processing 89/108 atomic regions from SNP 26608 to 27210 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:25,812 DEBUG Processing 70/217 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,868 DEBUG Processing 90/108 atomic regions from SNP 26910 to 27512 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:26,043 DEBUG Processing 71/217 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,092 DEBUG Processing 91/108 atomic regions from SNP 27212 to 27814 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:26,273 DEBUG Processing 72/217 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,312 DEBUG Processing 92/108 atomic regions from SNP 27514 to 28116 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:26,504 DEBUG Processing 73/217 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,534 DEBUG Processing 93/108 atomic regions from SNP 27816 to 28418 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:26,741 DEBUG Processing 74/217 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,761 DEBUG Processing 94/108 atomic regions from SNP 28118 to 28720 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:26,987 DEBUG Processing 75/217 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,999 DEBUG Processing 95/108 atomic regions from SNP 28420 to 29022 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:27,228 DEBUG Processing 96/108 atomic regions from SNP 28722 to 29324 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:27,229 DEBUG Processing 76/217 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,449 DEBUG Processing 97/108 atomic regions from SNP 29024 to 29626 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:27,469 DEBUG Processing 77/217 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,668 DEBUG Processing 98/108 atomic regions from SNP 29326 to 29928 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:27,708 DEBUG Processing 78/217 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,894 DEBUG Processing 99/108 atomic regions from SNP 29628 to 30230 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:27,943 DEBUG Processing 79/217 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,128 DEBUG Processing 100/108 atomic regions from SNP 29930 to 30532 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:28,191 DEBUG Processing 80/217 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,356 DEBUG Processing 101/108 atomic regions from SNP 30232 to 30834 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:28,438 DEBUG Processing 81/217 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,578 DEBUG Processing 102/108 atomic regions from SNP 30534 to 31136 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:28,679 DEBUG Processing 82/217 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,798 DEBUG Processing 103/108 atomic regions from SNP 30836 to 31438 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:28,926 DEBUG Processing 83/217 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,021 DEBUG Processing 104/108 atomic regions from SNP 31138 to 31740 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:29,164 DEBUG Processing 84/217 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,245 DEBUG Processing 105/108 atomic regions from SNP 31440 to 32042 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:29,399 DEBUG Processing 85/217 atomic regions from SNP 25284 to 25884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,467 DEBUG Processing 106/108 atomic regions from SNP 31742 to 32344 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:29,633 DEBUG Processing 86/217 atomic regions from SNP 25584 to 26184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,692 DEBUG Processing 107/108 atomic regions from SNP 32044 to 32646 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:29,874 DEBUG Processing 87/217 atomic regions from SNP 25884 to 26484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,924 DEBUG Processing 108/108 atomic regions from SNP 32346 to 32948 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:30,045 DEBUG Unique SNPs positions in subchromosome 1: 32949 2025-01-31 09:44:30,117 DEBUG Processing 88/217 atomic regions from SNP 26184 to 26784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,125 DEBUG Subchromosome time: 30.03229275206104, subchromosome SNPs: 32949 2025-01-31 09:44:30,162 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:30,356 DEBUG Processing 89/217 atomic regions from SNP 26484 to 27084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,593 DEBUG Processing 90/217 atomic regions from SNP 26784 to 27384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,826 DEBUG Processing 91/217 atomic regions from SNP 27084 to 27684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,056 DEBUG Processing 92/217 atomic regions from SNP 27384 to 27984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,129 DEBUG Segmenting atomic regions: 2025-01-31 09:44:31,242 DEBUG Processing 1/855 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,287 DEBUG Processing 93/217 atomic regions from SNP 27684 to 28284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,519 DEBUG Processing 94/217 atomic regions from SNP 27984 to 28584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,749 DEBUG Processing 95/217 atomic regions from SNP 28284 to 28884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,981 DEBUG Processing 96/217 atomic regions from SNP 28584 to 29184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,994 DEBUG Processing 2/855 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,212 DEBUG Processing 97/217 atomic regions from SNP 28884 to 29484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,222 DEBUG Processing 3/855 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,228 DEBUG Segmenting atomic regions: 2025-01-31 09:44:32,347 DEBUG Processing 1/899 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,440 DEBUG Processing 98/217 atomic regions from SNP 29184 to 29784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,450 DEBUG Processing 4/855 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,676 DEBUG Processing 99/217 atomic regions from SNP 29484 to 30084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,684 DEBUG Processing 5/855 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,915 DEBUG Processing 100/217 atomic regions from SNP 29784 to 30384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,918 DEBUG Processing 6/855 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,120 DEBUG Processing 2/899 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,145 DEBUG Processing 7/855 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,150 DEBUG Processing 101/217 atomic regions from SNP 30084 to 30684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,365 DEBUG Processing 3/899 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,381 DEBUG Processing 8/855 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,392 DEBUG Processing 102/217 atomic regions from SNP 30384 to 30984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,617 DEBUG Processing 4/899 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,623 DEBUG Processing 9/855 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,636 DEBUG Processing 103/217 atomic regions from SNP 30684 to 31284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,863 DEBUG Processing 10/855 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,866 DEBUG Processing 5/899 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,876 DEBUG Processing 104/217 atomic regions from SNP 30984 to 31584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,103 DEBUG Processing 11/855 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,114 DEBUG Processing 6/899 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,129 DEBUG Processing 105/217 atomic regions from SNP 31284 to 31884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,342 DEBUG Processing 12/855 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,363 DEBUG Processing 7/899 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,366 DEBUG Processing 106/217 atomic regions from SNP 31584 to 32184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,584 DEBUG Processing 13/855 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,605 DEBUG Processing 107/217 atomic regions from SNP 31884 to 32484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,612 DEBUG Processing 8/899 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,823 DEBUG Processing 14/855 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,839 DEBUG Processing 108/217 atomic regions from SNP 32184 to 32784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,856 DEBUG Processing 9/899 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,058 DEBUG Processing 15/855 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,071 DEBUG Processing 109/217 atomic regions from SNP 32484 to 33084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,099 DEBUG Processing 10/899 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,295 DEBUG Processing 16/855 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,305 DEBUG Processing 110/217 atomic regions from SNP 32784 to 33384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,341 DEBUG Processing 11/899 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,535 DEBUG Processing 17/855 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,540 DEBUG Processing 111/217 atomic regions from SNP 33084 to 33684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,582 DEBUG Processing 12/899 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,777 DEBUG Processing 112/217 atomic regions from SNP 33384 to 33984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,778 DEBUG Processing 18/855 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,825 DEBUG Processing 13/899 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,017 DEBUG Processing 113/217 atomic regions from SNP 33684 to 34284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,020 DEBUG Processing 19/855 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,072 DEBUG Processing 14/899 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,250 DEBUG Processing 114/217 atomic regions from SNP 33984 to 34584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,257 DEBUG Processing 20/855 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,311 DEBUG Processing 15/899 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,481 DEBUG Processing 115/217 atomic regions from SNP 34284 to 34884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,497 DEBUG Processing 21/855 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,549 DEBUG Processing 16/899 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,712 DEBUG Processing 116/217 atomic regions from SNP 34584 to 35184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,737 DEBUG Processing 22/855 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,790 DEBUG Processing 17/899 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,949 DEBUG Processing 117/217 atomic regions from SNP 34884 to 35484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,978 DEBUG Processing 23/855 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,032 DEBUG Processing 18/899 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,185 DEBUG Processing 118/217 atomic regions from SNP 35184 to 35784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,215 DEBUG Processing 24/855 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,276 DEBUG Processing 19/899 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,424 DEBUG Processing 119/217 atomic regions from SNP 35484 to 36084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,452 DEBUG Processing 25/855 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,522 DEBUG Processing 20/899 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,665 DEBUG Processing 120/217 atomic regions from SNP 35784 to 36384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,688 DEBUG Processing 26/855 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,764 DEBUG Processing 21/899 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,907 DEBUG Processing 121/217 atomic regions from SNP 36084 to 36684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,923 DEBUG Processing 27/855 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,004 DEBUG Processing 22/899 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,152 DEBUG Processing 122/217 atomic regions from SNP 36384 to 36984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,164 DEBUG Processing 28/855 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,246 DEBUG Processing 23/899 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,396 DEBUG Processing 123/217 atomic regions from SNP 36684 to 37284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,405 DEBUG Processing 29/855 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,492 DEBUG Processing 24/899 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,645 DEBUG Processing 124/217 atomic regions from SNP 36984 to 37584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,647 DEBUG Processing 30/855 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,738 DEBUG Processing 25/899 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,887 DEBUG Processing 31/855 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,895 DEBUG Processing 125/217 atomic regions from SNP 37284 to 37884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,983 DEBUG Processing 26/899 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,124 DEBUG Processing 32/855 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,138 DEBUG Processing 126/217 atomic regions from SNP 37584 to 38184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,229 DEBUG Processing 27/899 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,360 DEBUG Processing 33/855 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,381 DEBUG Processing 127/217 atomic regions from SNP 37884 to 38484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,474 DEBUG Processing 28/899 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,595 DEBUG Processing 34/855 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,623 DEBUG Processing 128/217 atomic regions from SNP 38184 to 38784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,724 DEBUG Processing 29/899 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,833 DEBUG Processing 35/855 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,868 DEBUG Processing 129/217 atomic regions from SNP 38484 to 39084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,970 DEBUG Processing 30/899 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,073 DEBUG Processing 36/855 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,123 DEBUG Processing 130/217 atomic regions from SNP 38784 to 39384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,213 DEBUG Processing 31/899 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,302 DEBUG Processing 37/855 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,370 DEBUG Processing 131/217 atomic regions from SNP 39084 to 39684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,458 DEBUG Processing 32/899 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,532 DEBUG Processing 38/855 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,617 DEBUG Processing 132/217 atomic regions from SNP 39384 to 39984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,714 DEBUG Processing 33/899 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,765 DEBUG Processing 39/855 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,862 DEBUG Processing 133/217 atomic regions from SNP 39684 to 40284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,968 DEBUG Processing 34/899 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,000 DEBUG Processing 40/855 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,104 DEBUG Processing 134/217 atomic regions from SNP 39984 to 40584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,208 DEBUG Processing 35/899 atomic regions from SNP 10234 to 10834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,230 DEBUG Processing 41/855 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,344 DEBUG Processing 135/217 atomic regions from SNP 40284 to 40884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,446 DEBUG Processing 36/899 atomic regions from SNP 10534 to 11134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,463 DEBUG Processing 42/855 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,576 DEBUG Processing 136/217 atomic regions from SNP 40584 to 41184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,686 DEBUG Processing 37/899 atomic regions from SNP 10834 to 11434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,698 DEBUG Processing 43/855 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,805 DEBUG Segmenting atomic regions: 2025-01-31 09:44:41,813 DEBUG Processing 137/217 atomic regions from SNP 40884 to 41484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,927 DEBUG Processing 38/899 atomic regions from SNP 11134 to 11734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,936 DEBUG Processing 44/855 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,950 DEBUG Processing 1/1020 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,054 DEBUG Processing 138/217 atomic regions from SNP 41184 to 41784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,167 DEBUG Processing 39/899 atomic regions from SNP 11434 to 12034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,176 DEBUG Processing 45/855 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,297 DEBUG Processing 139/217 atomic regions from SNP 41484 to 42084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,412 DEBUG Processing 46/855 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,414 DEBUG Processing 40/899 atomic regions from SNP 11734 to 12334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,540 DEBUG Processing 140/217 atomic regions from SNP 41784 to 42384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,653 DEBUG Processing 47/855 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,675 DEBUG Processing 41/899 atomic regions from SNP 12034 to 12634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,751 DEBUG Processing 2/1020 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,787 DEBUG Processing 141/217 atomic regions from SNP 42084 to 42684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,906 DEBUG Processing 48/855 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,942 DEBUG Processing 42/899 atomic regions from SNP 12334 to 12934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,030 DEBUG Processing 142/217 atomic regions from SNP 42384 to 42984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,041 DEBUG Processing 3/1020 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,149 DEBUG Processing 49/855 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,185 DEBUG Processing 43/899 atomic regions from SNP 12634 to 13234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,271 DEBUG Processing 143/217 atomic regions from SNP 42684 to 43284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,309 DEBUG Processing 4/1020 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,392 DEBUG Processing 50/855 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,427 DEBUG Processing 44/899 atomic regions from SNP 12934 to 13534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,509 DEBUG Processing 144/217 atomic regions from SNP 42984 to 43584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,573 DEBUG Processing 5/1020 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,632 DEBUG Processing 51/855 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,670 DEBUG Processing 45/899 atomic regions from SNP 13234 to 13834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,751 DEBUG Processing 145/217 atomic regions from SNP 43284 to 43884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,837 DEBUG Processing 6/1020 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,868 DEBUG Processing 52/855 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,912 DEBUG Processing 46/899 atomic regions from SNP 13534 to 14134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,995 DEBUG Processing 146/217 atomic regions from SNP 43584 to 44184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,100 DEBUG Processing 7/1020 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,107 DEBUG Processing 53/855 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,153 DEBUG Processing 47/899 atomic regions from SNP 13834 to 14434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,241 DEBUG Processing 147/217 atomic regions from SNP 43884 to 44484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,347 DEBUG Processing 54/855 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,370 DEBUG Processing 8/1020 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,397 DEBUG Processing 48/899 atomic regions from SNP 14134 to 14734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,488 DEBUG Processing 148/217 atomic regions from SNP 44184 to 44784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,583 DEBUG Processing 55/855 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,635 DEBUG Processing 9/1020 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,644 DEBUG Processing 49/899 atomic regions from SNP 14434 to 15034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,731 DEBUG Processing 149/217 atomic regions from SNP 44484 to 45084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,814 DEBUG Processing 56/855 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,887 DEBUG Processing 50/899 atomic regions from SNP 14734 to 15334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,912 DEBUG Processing 10/1020 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,976 DEBUG Processing 150/217 atomic regions from SNP 44784 to 45384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,048 DEBUG Processing 57/855 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,126 DEBUG Processing 51/899 atomic regions from SNP 15034 to 15634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,186 DEBUG Processing 11/1020 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,225 DEBUG Processing 151/217 atomic regions from SNP 45084 to 45684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,286 DEBUG Processing 58/855 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,360 DEBUG Processing 52/899 atomic regions from SNP 15334 to 15934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,474 DEBUG Processing 152/217 atomic regions from SNP 45384 to 45984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,474 DEBUG Processing 12/1020 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,529 DEBUG Processing 59/855 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,599 DEBUG Processing 53/899 atomic regions from SNP 15634 to 16234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,724 DEBUG Processing 153/217 atomic regions from SNP 45684 to 46284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,757 DEBUG Processing 13/1020 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,770 DEBUG Processing 60/855 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,843 DEBUG Processing 54/899 atomic regions from SNP 15934 to 16534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,971 DEBUG Processing 154/217 atomic regions from SNP 45984 to 46584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,007 DEBUG Processing 61/855 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,029 DEBUG Processing 14/1020 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,088 DEBUG Processing 55/899 atomic regions from SNP 16234 to 16834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,217 DEBUG Processing 155/217 atomic regions from SNP 46284 to 46884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,242 DEBUG Processing 62/855 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,300 DEBUG Processing 15/1020 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,331 DEBUG Processing 56/899 atomic regions from SNP 16534 to 17134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,462 DEBUG Processing 156/217 atomic regions from SNP 46584 to 47184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,475 DEBUG Processing 63/855 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,567 DEBUG Processing 16/1020 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,569 DEBUG Processing 57/899 atomic regions from SNP 16834 to 17434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,703 DEBUG Processing 157/217 atomic regions from SNP 46884 to 47484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,714 DEBUG Processing 64/855 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,804 DEBUG Processing 58/899 atomic regions from SNP 17134 to 17734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,829 DEBUG Processing 17/1020 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,832 DEBUG Segmenting atomic regions: 2025-01-31 09:44:46,948 DEBUG Processing 158/217 atomic regions from SNP 47184 to 47784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,955 DEBUG Processing 65/855 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,984 DEBUG Processing 1/1130 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,040 DEBUG Processing 59/899 atomic regions from SNP 17434 to 18034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,092 DEBUG Processing 18/1020 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,196 DEBUG Processing 159/217 atomic regions from SNP 47484 to 48084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,202 DEBUG Processing 66/855 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,280 DEBUG Processing 60/899 atomic regions from SNP 17734 to 18334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,365 DEBUG Processing 19/1020 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,447 DEBUG Processing 67/855 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,449 DEBUG Processing 160/217 atomic regions from SNP 47784 to 48384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,522 DEBUG Processing 61/899 atomic regions from SNP 18034 to 18634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,654 DEBUG Processing 20/1020 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,694 DEBUG Processing 68/855 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,707 DEBUG Processing 161/217 atomic regions from SNP 48084 to 48684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,765 DEBUG Processing 62/899 atomic regions from SNP 18334 to 18934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,886 DEBUG Processing 2/1130 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,936 DEBUG Processing 69/855 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,950 DEBUG Processing 21/1020 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,962 DEBUG Processing 162/217 atomic regions from SNP 48384 to 48984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,011 DEBUG Processing 63/899 atomic regions from SNP 18634 to 19234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,073 DEBUG Segmenting atomic regions: 2025-01-31 09:44:48,166 DEBUG Processing 3/1130 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,182 DEBUG Processing 1/477 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,184 DEBUG Processing 70/855 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,216 DEBUG Processing 163/217 atomic regions from SNP 48684 to 49284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,237 DEBUG Processing 22/1020 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,259 DEBUG Processing 64/899 atomic regions from SNP 18934 to 19534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,431 DEBUG Processing 71/855 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,433 DEBUG Processing 2/477 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,449 DEBUG Processing 4/1130 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,466 DEBUG Processing 164/217 atomic regions from SNP 48984 to 49584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,512 DEBUG Processing 65/899 atomic regions from SNP 19234 to 19834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,518 DEBUG Processing 23/1020 atomic regions from SNP 6622 to 7222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,668 DEBUG Processing 72/855 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,669 DEBUG Processing 3/477 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,708 DEBUG Processing 165/217 atomic regions from SNP 49284 to 49884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,732 DEBUG Processing 5/1130 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,774 DEBUG Processing 66/899 atomic regions from SNP 19534 to 20134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,796 DEBUG Processing 24/1020 atomic regions from SNP 6922 to 7522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,901 DEBUG Processing 4/477 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,905 DEBUG Processing 73/855 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,950 DEBUG Processing 166/217 atomic regions from SNP 49584 to 50184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,023 DEBUG Processing 6/1130 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,053 DEBUG Processing 67/899 atomic regions from SNP 19834 to 20434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,072 DEBUG Processing 25/1020 atomic regions from SNP 7222 to 7822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,129 DEBUG Processing 5/477 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,138 DEBUG Processing 74/855 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,202 DEBUG Processing 167/217 atomic regions from SNP 49884 to 50484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,306 DEBUG Processing 68/899 atomic regions from SNP 20134 to 20734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,307 DEBUG Processing 7/1130 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,342 DEBUG Processing 26/1020 atomic regions from SNP 7522 to 8122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,365 DEBUG Processing 6/477 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,378 DEBUG Processing 75/855 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,465 DEBUG Processing 168/217 atomic regions from SNP 50184 to 50784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,559 DEBUG Processing 69/899 atomic regions from SNP 20434 to 21034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,598 DEBUG Processing 8/1130 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,608 DEBUG Processing 27/1020 atomic regions from SNP 7822 to 8422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,610 DEBUG Processing 7/477 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,621 DEBUG Processing 76/855 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,728 DEBUG Processing 169/217 atomic regions from SNP 50484 to 51084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,809 DEBUG Processing 70/899 atomic regions from SNP 20734 to 21334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,865 DEBUG Processing 8/477 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,868 DEBUG Processing 77/855 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,875 DEBUG Processing 28/1020 atomic regions from SNP 8122 to 8722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,883 DEBUG Processing 9/1130 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,000 DEBUG Processing 170/217 atomic regions from SNP 50784 to 51384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,058 DEBUG Processing 71/899 atomic regions from SNP 21034 to 21634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,120 DEBUG Processing 78/855 atomic regions from SNP 23177 to 23777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,134 DEBUG Processing 9/477 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,153 DEBUG Processing 29/1020 atomic regions from SNP 8422 to 9022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,174 DEBUG Processing 10/1130 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,255 DEBUG Processing 171/217 atomic regions from SNP 51084 to 51684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,306 DEBUG Processing 72/899 atomic regions from SNP 21334 to 21934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,360 DEBUG Processing 79/855 atomic regions from SNP 23477 to 24077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,403 DEBUG Processing 10/477 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,418 DEBUG Processing 30/1020 atomic regions from SNP 8722 to 9322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,446 DEBUG Processing 11/1130 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,495 DEBUG Processing 172/217 atomic regions from SNP 51384 to 51984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,556 DEBUG Processing 73/899 atomic regions from SNP 21634 to 22234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,605 DEBUG Processing 80/855 atomic regions from SNP 23777 to 24377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,665 DEBUG Processing 11/477 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,684 DEBUG Processing 31/1020 atomic regions from SNP 9022 to 9622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,719 DEBUG Processing 12/1130 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,734 DEBUG Processing 173/217 atomic regions from SNP 51684 to 52284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,807 DEBUG Processing 74/899 atomic regions from SNP 21934 to 22534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,853 DEBUG Processing 81/855 atomic regions from SNP 24077 to 24677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,932 DEBUG Processing 12/477 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,955 DEBUG Processing 32/1020 atomic regions from SNP 9322 to 9922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,976 DEBUG Processing 174/217 atomic regions from SNP 51984 to 52584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,991 DEBUG Processing 13/1130 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,058 DEBUG Processing 75/899 atomic regions from SNP 22234 to 22834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,101 DEBUG Processing 82/855 atomic regions from SNP 24377 to 24977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,181 DEBUG Processing 13/477 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,221 DEBUG Processing 175/217 atomic regions from SNP 52284 to 52884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,225 DEBUG Processing 33/1020 atomic regions from SNP 9622 to 10222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,264 DEBUG Processing 14/1130 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,300 DEBUG Processing 76/899 atomic regions from SNP 22534 to 23134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,343 DEBUG Processing 83/855 atomic regions from SNP 24677 to 25277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,441 DEBUG Processing 14/477 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,463 DEBUG Processing 176/217 atomic regions from SNP 52584 to 53184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,496 DEBUG Processing 34/1020 atomic regions from SNP 9922 to 10522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,541 DEBUG Processing 15/1130 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,544 DEBUG Processing 77/899 atomic regions from SNP 22834 to 23434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,583 DEBUG Processing 84/855 atomic regions from SNP 24977 to 25577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,691 DEBUG Processing 15/477 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,701 DEBUG Processing 177/217 atomic regions from SNP 52884 to 53484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:51,769 DEBUG Processing 35/1020 atomic regions from SNP 10222 to 10822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,797 DEBUG Processing 78/899 atomic regions from SNP 23134 to 23734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,828 DEBUG Processing 85/855 atomic regions from SNP 25277 to 25877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,829 DEBUG Processing 16/1130 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,934 DEBUG Processing 16/477 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,947 DEBUG Processing 178/217 atomic regions from SNP 53184 to 53784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,053 DEBUG Processing 36/1020 atomic regions from SNP 10522 to 11122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,057 DEBUG Processing 79/899 atomic regions from SNP 23434 to 24034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,078 DEBUG Processing 86/855 atomic regions from SNP 25577 to 26177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,120 DEBUG Processing 17/1130 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,188 DEBUG Processing 17/477 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,200 DEBUG Processing 179/217 atomic regions from SNP 53484 to 54084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,307 DEBUG Processing 80/899 atomic regions from SNP 23734 to 24334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,322 DEBUG Processing 87/855 atomic regions from SNP 25877 to 26477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,325 DEBUG Processing 37/1020 atomic regions from SNP 10822 to 11422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,397 DEBUG Processing 18/1130 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,439 DEBUG Processing 18/477 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,449 DEBUG Processing 180/217 atomic regions from SNP 53784 to 54384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,558 DEBUG Processing 81/899 atomic regions from SNP 24034 to 24634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,564 DEBUG Processing 88/855 atomic regions from SNP 26177 to 26777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,597 DEBUG Processing 38/1020 atomic regions from SNP 11122 to 11722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,673 DEBUG Processing 19/1130 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,676 DEBUG Processing 19/477 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,699 DEBUG Processing 181/217 atomic regions from SNP 54084 to 54684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,805 DEBUG Processing 89/855 atomic regions from SNP 26477 to 27077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,808 DEBUG Processing 82/899 atomic regions from SNP 24334 to 24934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,864 DEBUG Processing 39/1020 atomic regions from SNP 11422 to 12022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,913 DEBUG Processing 20/477 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,947 DEBUG Processing 182/217 atomic regions from SNP 54384 to 54984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:52,950 DEBUG Processing 20/1130 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,050 DEBUG Processing 90/855 atomic regions from SNP 26777 to 27377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,058 DEBUG Processing 83/899 atomic regions from SNP 24634 to 25234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,133 DEBUG Processing 40/1020 atomic regions from SNP 11722 to 12322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,149 DEBUG Processing 21/477 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,191 DEBUG Processing 183/217 atomic regions from SNP 54684 to 55284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,224 DEBUG Processing 21/1130 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,294 DEBUG Processing 91/855 atomic regions from SNP 27077 to 27677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,309 DEBUG Processing 84/899 atomic regions from SNP 24934 to 25534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,388 DEBUG Processing 22/477 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,407 DEBUG Processing 41/1020 atomic regions from SNP 12022 to 12622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,433 DEBUG Processing 184/217 atomic regions from SNP 54984 to 55584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,500 DEBUG Processing 22/1130 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,552 DEBUG Processing 92/855 atomic regions from SNP 27377 to 27977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,565 DEBUG Processing 85/899 atomic regions from SNP 25234 to 25834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,632 DEBUG Processing 23/477 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,676 DEBUG Processing 185/217 atomic regions from SNP 55284 to 55884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,683 DEBUG Processing 42/1020 atomic regions from SNP 12322 to 12922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,775 DEBUG Processing 23/1130 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,815 DEBUG Processing 93/855 atomic regions from SNP 27677 to 28277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,825 DEBUG Processing 86/899 atomic regions from SNP 25534 to 26134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,876 DEBUG Processing 24/477 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,924 DEBUG Processing 186/217 atomic regions from SNP 55584 to 56184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:53,958 DEBUG Processing 43/1020 atomic regions from SNP 12622 to 13222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,043 DEBUG Processing 24/1130 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,053 DEBUG Processing 94/855 atomic regions from SNP 27977 to 28577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,072 DEBUG Processing 87/899 atomic regions from SNP 25834 to 26434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,121 DEBUG Processing 25/477 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,182 DEBUG Processing 187/217 atomic regions from SNP 55884 to 56484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,234 DEBUG Processing 44/1020 atomic regions from SNP 12922 to 13522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,286 DEBUG Processing 95/855 atomic regions from SNP 28277 to 28877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,313 DEBUG Processing 25/1130 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,315 DEBUG Processing 88/899 atomic regions from SNP 26134 to 26734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,366 DEBUG Processing 26/477 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,444 DEBUG Processing 188/217 atomic regions from SNP 56184 to 56784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,512 DEBUG Processing 45/1020 atomic regions from SNP 13222 to 13822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,520 DEBUG Processing 96/855 atomic regions from SNP 28577 to 29177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,584 DEBUG Processing 26/1130 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,584 DEBUG Processing 89/899 atomic regions from SNP 26434 to 27034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,601 DEBUG Processing 27/477 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,705 DEBUG Processing 189/217 atomic regions from SNP 56484 to 57084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:54,768 DEBUG Processing 97/855 atomic regions from SNP 28877 to 29477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,784 DEBUG Processing 46/1020 atomic regions from SNP 13522 to 14122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,832 DEBUG Processing 90/899 atomic regions from SNP 26734 to 27334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,833 DEBUG Processing 28/477 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,859 DEBUG Processing 27/1130 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,967 DEBUG Processing 190/217 atomic regions from SNP 56784 to 57384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,013 DEBUG Processing 98/855 atomic regions from SNP 29177 to 29777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,055 DEBUG Processing 47/1020 atomic regions from SNP 13822 to 14422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,066 DEBUG Processing 29/477 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,089 DEBUG Processing 91/899 atomic regions from SNP 27034 to 27634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,139 DEBUG Processing 28/1130 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,230 DEBUG Processing 191/217 atomic regions from SNP 57084 to 57684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,256 DEBUG Processing 99/855 atomic regions from SNP 29477 to 30077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,304 DEBUG Processing 30/477 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,325 DEBUG Processing 48/1020 atomic regions from SNP 14122 to 14722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,366 DEBUG Processing 92/899 atomic regions from SNP 27334 to 27934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,419 DEBUG Processing 29/1130 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,491 DEBUG Processing 192/217 atomic regions from SNP 57384 to 57984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,496 DEBUG Processing 100/855 atomic regions from SNP 29777 to 30377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,543 DEBUG Processing 31/477 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,593 DEBUG Processing 49/1020 atomic regions from SNP 14422 to 15022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,614 DEBUG Processing 93/899 atomic regions from SNP 27634 to 28234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,701 DEBUG Processing 30/1130 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,738 DEBUG Processing 101/855 atomic regions from SNP 30077 to 30677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,746 DEBUG Processing 193/217 atomic regions from SNP 57684 to 58284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:55,780 DEBUG Processing 32/477 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,866 DEBUG Processing 50/1020 atomic regions from SNP 14722 to 15322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,867 DEBUG Processing 94/899 atomic regions from SNP 27934 to 28534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,980 DEBUG Processing 102/855 atomic regions from SNP 30377 to 30977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,986 DEBUG Processing 31/1130 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,004 DEBUG Processing 194/217 atomic regions from SNP 57984 to 58584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,019 DEBUG Processing 33/477 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,115 DEBUG Processing 95/899 atomic regions from SNP 28234 to 28834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,138 DEBUG Processing 51/1020 atomic regions from SNP 15022 to 15622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,221 DEBUG Processing 103/855 atomic regions from SNP 30677 to 31277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,256 DEBUG Processing 34/477 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,258 DEBUG Processing 195/217 atomic regions from SNP 58284 to 58884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,272 DEBUG Processing 32/1130 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,361 DEBUG Processing 96/899 atomic regions from SNP 28534 to 29134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,414 DEBUG Processing 52/1020 atomic regions from SNP 15322 to 15922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,464 DEBUG Processing 104/855 atomic regions from SNP 30977 to 31577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,500 DEBUG Processing 35/477 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,515 DEBUG Processing 196/217 atomic regions from SNP 58584 to 59184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,561 DEBUG Processing 33/1130 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,610 DEBUG Processing 97/899 atomic regions from SNP 28834 to 29434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,680 DEBUG Processing 53/1020 atomic regions from SNP 15622 to 16222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,699 DEBUG Processing 105/855 atomic regions from SNP 31277 to 31877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,744 DEBUG Processing 36/477 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,773 DEBUG Processing 197/217 atomic regions from SNP 58884 to 59484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:56,855 DEBUG Processing 34/1130 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,870 DEBUG Processing 98/899 atomic regions from SNP 29134 to 29734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,934 DEBUG Processing 106/855 atomic regions from SNP 31577 to 32177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,949 DEBUG Processing 54/1020 atomic regions from SNP 15922 to 16522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,006 DEBUG Processing 37/477 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,030 DEBUG Processing 198/217 atomic regions from SNP 59184 to 59784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,130 DEBUG Processing 99/899 atomic regions from SNP 29434 to 30034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,150 DEBUG Processing 35/1130 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,177 DEBUG Processing 107/855 atomic regions from SNP 31877 to 32477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,217 DEBUG Processing 55/1020 atomic regions from SNP 16222 to 16822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,242 DEBUG Processing 38/477 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,282 DEBUG Processing 199/217 atomic regions from SNP 59484 to 60084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,387 DEBUG Processing 100/899 atomic regions from SNP 29734 to 30334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,428 DEBUG Processing 108/855 atomic regions from SNP 32177 to 32777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,436 DEBUG Processing 36/1130 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,469 DEBUG Processing 39/477 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,483 DEBUG Processing 56/1020 atomic regions from SNP 16522 to 17122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,531 DEBUG Processing 200/217 atomic regions from SNP 59784 to 60384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,644 DEBUG Processing 101/899 atomic regions from SNP 30034 to 30634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,692 DEBUG Processing 109/855 atomic regions from SNP 32477 to 33077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,705 DEBUG Processing 40/477 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,718 DEBUG Processing 37/1130 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,750 DEBUG Processing 57/1020 atomic regions from SNP 16822 to 17422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,776 DEBUG Processing 201/217 atomic regions from SNP 60084 to 60684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:57,894 DEBUG Processing 102/899 atomic regions from SNP 30334 to 30934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,949 DEBUG Processing 41/477 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,953 DEBUG Processing 110/855 atomic regions from SNP 32777 to 33377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,018 DEBUG Processing 58/1020 atomic regions from SNP 17122 to 17722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,021 DEBUG Processing 202/217 atomic regions from SNP 60384 to 60984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,022 DEBUG Processing 38/1130 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,136 DEBUG Processing 103/899 atomic regions from SNP 30634 to 31234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,191 DEBUG Processing 42/477 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,198 DEBUG Processing 111/855 atomic regions from SNP 33077 to 33677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,271 DEBUG Processing 203/217 atomic regions from SNP 60684 to 61284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,293 DEBUG Processing 59/1020 atomic regions from SNP 17422 to 18022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,320 DEBUG Processing 39/1130 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,379 DEBUG Processing 104/899 atomic regions from SNP 30934 to 31534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,430 DEBUG Processing 43/477 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,448 DEBUG Processing 112/855 atomic regions from SNP 33377 to 33977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,524 DEBUG Processing 204/217 atomic regions from SNP 60984 to 61584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,577 DEBUG Processing 60/1020 atomic regions from SNP 17722 to 18322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,603 DEBUG Processing 40/1130 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,630 DEBUG Processing 105/899 atomic regions from SNP 31234 to 31834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,662 DEBUG Processing 44/477 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,719 DEBUG Processing 113/855 atomic regions from SNP 33677 to 34277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,773 DEBUG Processing 205/217 atomic regions from SNP 61284 to 61884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:58,858 DEBUG Processing 61/1020 atomic regions from SNP 18022 to 18622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,878 DEBUG Processing 106/899 atomic regions from SNP 31534 to 32134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,882 DEBUG Processing 41/1130 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,894 DEBUG Processing 45/477 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,992 DEBUG Processing 114/855 atomic regions from SNP 33977 to 34577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,025 DEBUG Processing 206/217 atomic regions from SNP 61584 to 62184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,139 DEBUG Processing 46/477 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,141 DEBUG Processing 107/899 atomic regions from SNP 31834 to 32434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,149 DEBUG Processing 62/1020 atomic regions from SNP 18322 to 18922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,173 DEBUG Processing 42/1130 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,260 DEBUG Processing 115/855 atomic regions from SNP 34277 to 34877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,264 DEBUG Processing 207/217 atomic regions from SNP 61884 to 62484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,381 DEBUG Processing 47/477 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,392 DEBUG Processing 108/899 atomic regions from SNP 32134 to 32734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,433 DEBUG Processing 63/1020 atomic regions from SNP 18622 to 19222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,452 DEBUG Processing 43/1130 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,499 DEBUG Processing 208/217 atomic regions from SNP 62184 to 62784 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,523 DEBUG Processing 116/855 atomic regions from SNP 34577 to 35177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,627 DEBUG Processing 48/477 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,646 DEBUG Processing 109/899 atomic regions from SNP 32434 to 33034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,715 DEBUG Processing 64/1020 atomic regions from SNP 18922 to 19522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,727 DEBUG Processing 44/1130 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,744 DEBUG Processing 209/217 atomic regions from SNP 62484 to 63084 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,783 DEBUG Processing 117/855 atomic regions from SNP 34877 to 35477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,873 DEBUG Processing 49/477 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,904 DEBUG Processing 110/899 atomic regions from SNP 32734 to 33334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,994 DEBUG Processing 210/217 atomic regions from SNP 62784 to 63384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:59,999 DEBUG Processing 65/1020 atomic regions from SNP 19222 to 19822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,007 DEBUG Processing 45/1130 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,024 DEBUG Processing 118/855 atomic regions from SNP 35177 to 35777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,110 DEBUG Processing 50/477 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,152 DEBUG Processing 111/899 atomic regions from SNP 33034 to 33634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,245 DEBUG Processing 211/217 atomic regions from SNP 63084 to 63684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:00,271 DEBUG Processing 119/855 atomic regions from SNP 35477 to 36077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,277 DEBUG Processing 66/1020 atomic regions from SNP 19522 to 20122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,295 DEBUG Processing 46/1130 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,351 DEBUG Processing 51/477 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,403 DEBUG Processing 112/899 atomic regions from SNP 33334 to 33934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,501 DEBUG Processing 212/217 atomic regions from SNP 63384 to 63984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:00,534 DEBUG Processing 120/855 atomic regions from SNP 35777 to 36377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,554 DEBUG Processing 67/1020 atomic regions from SNP 19822 to 20422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,572 DEBUG Processing 47/1130 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,585 DEBUG Processing 52/477 atomic regions from SNP 15351 to 15951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,640 DEBUG Processing 113/899 atomic regions from SNP 33634 to 34234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,778 DEBUG Processing 213/217 atomic regions from SNP 63684 to 64284 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:00,779 DEBUG Processing 121/855 atomic regions from SNP 36077 to 36677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,822 DEBUG Processing 53/477 atomic regions from SNP 15651 to 16251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,826 DEBUG Processing 68/1020 atomic regions from SNP 20122 to 20722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,857 DEBUG Processing 48/1130 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,885 DEBUG Processing 114/899 atomic regions from SNP 33934 to 34534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,033 DEBUG Processing 122/855 atomic regions from SNP 36377 to 36977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,068 DEBUG Processing 214/217 atomic regions from SNP 63984 to 64584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,075 DEBUG Processing 54/477 atomic regions from SNP 15951 to 16551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,110 DEBUG Processing 69/1020 atomic regions from SNP 20422 to 21022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,135 DEBUG Processing 115/899 atomic regions from SNP 34234 to 34834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,149 DEBUG Processing 49/1130 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,273 DEBUG Processing 123/855 atomic regions from SNP 36677 to 37277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,316 DEBUG Processing 55/477 atomic regions from SNP 16251 to 16851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,337 DEBUG Processing 215/217 atomic regions from SNP 64284 to 64884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,380 DEBUG Processing 116/899 atomic regions from SNP 34534 to 35134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,385 DEBUG Processing 70/1020 atomic regions from SNP 20722 to 21322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,426 DEBUG Processing 50/1130 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,506 DEBUG Processing 124/855 atomic regions from SNP 36977 to 37577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,553 DEBUG Processing 56/477 atomic regions from SNP 16551 to 17151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,601 DEBUG Processing 216/217 atomic regions from SNP 64584 to 65184 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,627 DEBUG Processing 117/899 atomic regions from SNP 34834 to 35434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,660 DEBUG Processing 71/1020 atomic regions from SNP 21022 to 21622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,702 DEBUG Processing 51/1130 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,737 DEBUG Processing 125/855 atomic regions from SNP 37277 to 37877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,783 DEBUG Processing 57/477 atomic regions from SNP 16851 to 17451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,863 DEBUG Processing 217/217 atomic regions from SNP 64884 to 65484 for chr4 (subchromosome 1 of 2). 2025-01-31 09:45:01,873 DEBUG Processing 118/899 atomic regions from SNP 35134 to 35734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,936 DEBUG Processing 72/1020 atomic regions from SNP 21322 to 21922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,974 DEBUG Processing 126/855 atomic regions from SNP 37577 to 38177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,980 DEBUG Processing 52/1130 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,013 DEBUG Processing 58/477 atomic regions from SNP 17151 to 17751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,019 DEBUG Unique SNPs positions in subchromosome 1: 65485 2025-01-31 09:45:02,119 DEBUG Processing 119/899 atomic regions from SNP 35434 to 36034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,221 DEBUG Processing 127/855 atomic regions from SNP 37877 to 38477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,223 DEBUG Processing 73/1020 atomic regions from SNP 21622 to 22222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,230 DEBUG Subchromosome time: 61.61865701607894, subchromosome SNPs: 65485 2025-01-31 09:45:02,252 DEBUG Processing 59/477 atomic regions from SNP 17451 to 18051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,263 DEBUG Processing 53/1130 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,282 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:02,358 DEBUG Processing 120/899 atomic regions from SNP 35734 to 36334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,466 DEBUG Processing 128/855 atomic regions from SNP 38177 to 38777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,492 DEBUG Processing 60/477 atomic regions from SNP 17751 to 18351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,507 DEBUG Processing 74/1020 atomic regions from SNP 21922 to 22522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,548 DEBUG Processing 54/1130 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,601 DEBUG Processing 121/899 atomic regions from SNP 36034 to 36634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,706 DEBUG Processing 129/855 atomic regions from SNP 38477 to 39077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,734 DEBUG Processing 61/477 atomic regions from SNP 18051 to 18651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,793 DEBUG Processing 75/1020 atomic regions from SNP 22222 to 22822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,830 DEBUG Processing 55/1130 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,843 DEBUG Processing 122/899 atomic regions from SNP 36334 to 36934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,938 DEBUG Processing 130/855 atomic regions from SNP 38777 to 39377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,968 DEBUG Processing 62/477 atomic regions from SNP 18351 to 18951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,078 DEBUG Processing 76/1020 atomic regions from SNP 22522 to 23122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,093 DEBUG Processing 123/899 atomic regions from SNP 36634 to 37234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,113 DEBUG Processing 56/1130 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,178 DEBUG Processing 131/855 atomic regions from SNP 39077 to 39677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,204 DEBUG Processing 63/477 atomic regions from SNP 18651 to 19251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,337 DEBUG Processing 124/899 atomic regions from SNP 36934 to 37534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,351 DEBUG Processing 77/1020 atomic regions from SNP 22822 to 23422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,386 DEBUG Processing 57/1130 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,410 DEBUG Processing 132/855 atomic regions from SNP 39377 to 39977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,434 DEBUG Processing 64/477 atomic regions from SNP 18951 to 19551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,580 DEBUG Processing 125/899 atomic regions from SNP 37234 to 37834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,619 DEBUG Processing 78/1020 atomic regions from SNP 23122 to 23722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,642 DEBUG Processing 133/855 atomic regions from SNP 39677 to 40277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,664 DEBUG Processing 65/477 atomic regions from SNP 19251 to 19851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,667 DEBUG Processing 58/1130 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,827 DEBUG Processing 126/899 atomic regions from SNP 37534 to 38134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,887 DEBUG Processing 134/855 atomic regions from SNP 39977 to 40577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,889 DEBUG Processing 79/1020 atomic regions from SNP 23422 to 24022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,894 DEBUG Processing 66/477 atomic regions from SNP 19551 to 20151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,954 DEBUG Processing 59/1130 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,071 DEBUG Processing 127/899 atomic regions from SNP 37834 to 38434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,118 DEBUG Processing 67/477 atomic regions from SNP 19851 to 20451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,132 DEBUG Processing 135/855 atomic regions from SNP 40277 to 40877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,155 DEBUG Processing 80/1020 atomic regions from SNP 23722 to 24322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,235 DEBUG Processing 60/1130 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,322 DEBUG Processing 128/899 atomic regions from SNP 38134 to 38734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,352 DEBUG Processing 68/477 atomic regions from SNP 20151 to 20751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,364 DEBUG Processing 136/855 atomic regions from SNP 40577 to 41177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,424 DEBUG Processing 81/1020 atomic regions from SNP 24022 to 24622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,505 DEBUG Processing 61/1130 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,575 DEBUG Processing 129/899 atomic regions from SNP 38434 to 39034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,588 DEBUG Processing 69/477 atomic regions from SNP 20451 to 21051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,603 DEBUG Processing 137/855 atomic regions from SNP 40877 to 41477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,698 DEBUG Processing 82/1020 atomic regions from SNP 24322 to 24922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,783 DEBUG Processing 62/1130 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,826 DEBUG Processing 130/899 atomic regions from SNP 38734 to 39334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,839 DEBUG Processing 70/477 atomic regions from SNP 20751 to 21351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,840 DEBUG Processing 138/855 atomic regions from SNP 41177 to 41777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,970 DEBUG Processing 83/1020 atomic regions from SNP 24622 to 25222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,068 DEBUG Processing 63/1130 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,078 DEBUG Processing 131/899 atomic regions from SNP 39034 to 39634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,082 DEBUG Processing 139/855 atomic regions from SNP 41477 to 42077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,093 DEBUG Processing 71/477 atomic regions from SNP 21051 to 21651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,243 DEBUG Processing 84/1020 atomic regions from SNP 24922 to 25522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,327 DEBUG Processing 140/855 atomic regions from SNP 41777 to 42377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,331 DEBUG Processing 132/899 atomic regions from SNP 39334 to 39934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,354 DEBUG Processing 64/1130 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,368 DEBUG Processing 72/477 atomic regions from SNP 21351 to 21951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,523 DEBUG Processing 85/1020 atomic regions from SNP 25222 to 25822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,575 DEBUG Processing 141/855 atomic regions from SNP 42077 to 42677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,583 DEBUG Processing 133/899 atomic regions from SNP 39634 to 40234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,628 DEBUG Processing 73/477 atomic regions from SNP 21651 to 22251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,634 DEBUG Processing 65/1130 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,810 DEBUG Processing 86/1020 atomic regions from SNP 25522 to 26122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,821 DEBUG Processing 142/855 atomic regions from SNP 42377 to 42977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,838 DEBUG Processing 134/899 atomic regions from SNP 39934 to 40534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,871 DEBUG Processing 74/477 atomic regions from SNP 21951 to 22551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,913 DEBUG Processing 66/1130 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,070 DEBUG Processing 143/855 atomic regions from SNP 42677 to 43277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,087 DEBUG Processing 135/899 atomic regions from SNP 40234 to 40834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,090 DEBUG Processing 87/1020 atomic regions from SNP 25822 to 26422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,110 DEBUG Processing 75/477 atomic regions from SNP 22251 to 22851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,190 DEBUG Processing 67/1130 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,307 DEBUG Processing 144/855 atomic regions from SNP 42977 to 43577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,332 DEBUG Processing 136/899 atomic regions from SNP 40534 to 41134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,347 DEBUG Processing 76/477 atomic regions from SNP 22551 to 23151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,379 DEBUG Processing 88/1020 atomic regions from SNP 26122 to 26722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,465 DEBUG Processing 68/1130 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,542 DEBUG Processing 145/855 atomic regions from SNP 43277 to 43877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,573 DEBUG Processing 137/899 atomic regions from SNP 40834 to 41434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,579 DEBUG Processing 77/477 atomic regions from SNP 22851 to 23451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,684 DEBUG Processing 89/1020 atomic regions from SNP 26422 to 27022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,743 DEBUG Processing 69/1130 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,776 DEBUG Processing 146/855 atomic regions from SNP 43577 to 44177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,805 DEBUG Processing 78/477 atomic regions from SNP 23151 to 23751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,812 DEBUG Processing 138/899 atomic regions from SNP 41134 to 41734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,961 DEBUG Processing 90/1020 atomic regions from SNP 26722 to 27322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,027 DEBUG Processing 70/1130 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,031 DEBUG Processing 147/855 atomic regions from SNP 43877 to 44477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,036 DEBUG Processing 79/477 atomic regions from SNP 23451 to 24051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,055 DEBUG Processing 139/899 atomic regions from SNP 41434 to 42034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,232 DEBUG Processing 91/1020 atomic regions from SNP 27022 to 27622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,281 DEBUG Processing 80/477 atomic regions from SNP 23751 to 24351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,304 DEBUG Processing 148/855 atomic regions from SNP 44177 to 44777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,306 DEBUG Processing 140/899 atomic regions from SNP 41734 to 42334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,314 DEBUG Processing 71/1130 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,518 DEBUG Processing 92/1020 atomic regions from SNP 27322 to 27922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,531 DEBUG Processing 81/477 atomic regions from SNP 24051 to 24651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,566 DEBUG Processing 141/899 atomic regions from SNP 42034 to 42634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,586 DEBUG Processing 149/855 atomic regions from SNP 44477 to 45077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,602 DEBUG Processing 72/1130 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,769 DEBUG Processing 82/477 atomic regions from SNP 24351 to 24951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,812 DEBUG Processing 93/1020 atomic regions from SNP 27622 to 28222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,823 DEBUG Processing 142/899 atomic regions from SNP 42334 to 42934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,859 DEBUG Processing 150/855 atomic regions from SNP 44777 to 45377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,885 DEBUG Processing 73/1130 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,995 DEBUG Processing 83/477 atomic regions from SNP 24651 to 25251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,087 DEBUG Processing 143/899 atomic regions from SNP 42634 to 43234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,113 DEBUG Processing 94/1020 atomic regions from SNP 27922 to 28522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,138 DEBUG Processing 151/855 atomic regions from SNP 45077 to 45677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,168 DEBUG Processing 74/1130 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,232 DEBUG Processing 84/477 atomic regions from SNP 24951 to 25551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,351 DEBUG Processing 144/899 atomic regions from SNP 42934 to 43534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,401 DEBUG Processing 95/1020 atomic regions from SNP 28222 to 28822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,416 DEBUG Processing 152/855 atomic regions from SNP 45377 to 45977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,449 DEBUG Processing 75/1130 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,478 DEBUG Processing 85/477 atomic regions from SNP 25251 to 25851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,592 DEBUG Processing 145/899 atomic regions from SNP 43234 to 43834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,667 DEBUG Processing 96/1020 atomic regions from SNP 28522 to 29122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,689 DEBUG Processing 153/855 atomic regions from SNP 45677 to 46277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,714 DEBUG Processing 86/477 atomic regions from SNP 25551 to 26151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,727 DEBUG Processing 76/1130 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,831 DEBUG Processing 146/899 atomic regions from SNP 43534 to 44134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,927 DEBUG Processing 97/1020 atomic regions from SNP 28822 to 29422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,937 DEBUG Processing 154/855 atomic regions from SNP 45977 to 46577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,958 DEBUG Processing 87/477 atomic regions from SNP 25851 to 26451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,011 DEBUG Processing 77/1130 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,067 DEBUG Processing 147/899 atomic regions from SNP 43834 to 44434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,180 DEBUG Processing 155/855 atomic regions from SNP 46277 to 46877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,184 DEBUG Processing 98/1020 atomic regions from SNP 29122 to 29722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,202 DEBUG Processing 88/477 atomic regions from SNP 26151 to 26751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,292 DEBUG Processing 78/1130 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,310 DEBUG Processing 148/899 atomic regions from SNP 44134 to 44734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,413 DEBUG Processing 156/855 atomic regions from SNP 46577 to 47177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,437 DEBUG Processing 89/477 atomic regions from SNP 26451 to 27051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,439 DEBUG Processing 99/1020 atomic regions from SNP 29422 to 30022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,561 DEBUG Processing 149/899 atomic regions from SNP 44434 to 45034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,580 DEBUG Processing 79/1130 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,650 DEBUG Processing 157/855 atomic regions from SNP 46877 to 47477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,667 DEBUG Processing 90/477 atomic regions from SNP 26751 to 27351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,698 DEBUG Processing 100/1020 atomic regions from SNP 29722 to 30322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,812 DEBUG Processing 150/899 atomic regions from SNP 44734 to 45334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,867 DEBUG Processing 80/1130 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,904 DEBUG Processing 91/477 atomic regions from SNP 27051 to 27651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,913 DEBUG Processing 158/855 atomic regions from SNP 47177 to 47777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,969 DEBUG Processing 101/1020 atomic regions from SNP 30022 to 30622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,059 DEBUG Processing 151/899 atomic regions from SNP 45034 to 45634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,148 DEBUG Processing 92/477 atomic regions from SNP 27351 to 27951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,154 DEBUG Processing 81/1130 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,179 DEBUG Processing 159/855 atomic regions from SNP 47477 to 48077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,246 DEBUG Processing 102/1020 atomic regions from SNP 30322 to 30922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,300 DEBUG Processing 152/899 atomic regions from SNP 45334 to 45934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,405 DEBUG Processing 93/477 atomic regions from SNP 27651 to 28251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,437 DEBUG Processing 160/855 atomic regions from SNP 47777 to 48377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,448 DEBUG Processing 82/1130 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,530 DEBUG Processing 103/1020 atomic regions from SNP 30622 to 31222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,549 DEBUG Processing 153/899 atomic regions from SNP 45634 to 46234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,658 DEBUG Processing 94/477 atomic regions from SNP 27951 to 28551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,675 DEBUG Processing 161/855 atomic regions from SNP 48077 to 48677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,729 DEBUG Processing 83/1130 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,808 DEBUG Processing 104/1020 atomic regions from SNP 30922 to 31522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,818 DEBUG Processing 154/899 atomic regions from SNP 45934 to 46534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,883 DEBUG Processing 95/477 atomic regions from SNP 28251 to 28851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,915 DEBUG Processing 162/855 atomic regions from SNP 48377 to 48977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,008 DEBUG Processing 84/1130 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,074 DEBUG Processing 155/899 atomic regions from SNP 46234 to 46834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,085 DEBUG Processing 105/1020 atomic regions from SNP 31222 to 31822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,113 DEBUG Processing 96/477 atomic regions from SNP 28551 to 29151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,175 DEBUG Processing 163/855 atomic regions from SNP 48677 to 49277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,280 DEBUG Processing 85/1130 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,331 DEBUG Processing 156/899 atomic regions from SNP 46534 to 47134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,352 DEBUG Processing 97/477 atomic regions from SNP 28851 to 29451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,393 DEBUG Processing 106/1020 atomic regions from SNP 31522 to 32122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,436 DEBUG Processing 164/855 atomic regions from SNP 48977 to 49577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,556 DEBUG Processing 86/1130 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,598 DEBUG Processing 98/477 atomic regions from SNP 29151 to 29751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,606 DEBUG Processing 157/899 atomic regions from SNP 46834 to 47434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,668 DEBUG Processing 107/1020 atomic regions from SNP 31822 to 32422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,687 DEBUG Processing 165/855 atomic regions from SNP 49277 to 49877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,832 DEBUG Processing 87/1130 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,858 DEBUG Processing 99/477 atomic regions from SNP 29451 to 30051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,867 DEBUG Processing 158/899 atomic regions from SNP 47134 to 47734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,942 DEBUG Processing 108/1020 atomic regions from SNP 32122 to 32722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,951 DEBUG Processing 166/855 atomic regions from SNP 49577 to 50177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,108 DEBUG Processing 100/477 atomic regions from SNP 29751 to 30351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,109 DEBUG Processing 88/1130 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,118 DEBUG Processing 159/899 atomic regions from SNP 47434 to 48034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,214 DEBUG Processing 109/1020 atomic regions from SNP 32422 to 33022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,217 DEBUG Processing 167/855 atomic regions from SNP 49877 to 50477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,363 DEBUG Processing 101/477 atomic regions from SNP 30051 to 30651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,365 DEBUG Processing 160/899 atomic regions from SNP 47734 to 48334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,392 DEBUG Processing 89/1130 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,486 DEBUG Processing 168/855 atomic regions from SNP 50177 to 50777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,487 DEBUG Processing 110/1020 atomic regions from SNP 32722 to 33322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,607 DEBUG Processing 102/477 atomic regions from SNP 30351 to 30951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,610 DEBUG Processing 161/899 atomic regions from SNP 48034 to 48634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,671 DEBUG Processing 90/1130 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,733 DEBUG Processing 169/855 atomic regions from SNP 50477 to 51077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,759 DEBUG Processing 111/1020 atomic regions from SNP 33022 to 33622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,845 DEBUG Processing 103/477 atomic regions from SNP 30651 to 31251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,856 DEBUG Processing 162/899 atomic regions from SNP 48334 to 48934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,946 DEBUG Processing 91/1130 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,966 DEBUG Processing 170/855 atomic regions from SNP 50777 to 51377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,036 DEBUG Processing 112/1020 atomic regions from SNP 33322 to 33922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,082 DEBUG Processing 104/477 atomic regions from SNP 30951 to 31551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,106 DEBUG Processing 163/899 atomic regions from SNP 48634 to 49234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,208 DEBUG Processing 171/855 atomic regions from SNP 51077 to 51677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,221 DEBUG Processing 92/1130 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,314 DEBUG Processing 105/477 atomic regions from SNP 31251 to 31851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,314 DEBUG Processing 113/1020 atomic regions from SNP 33622 to 34222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,355 DEBUG Processing 164/899 atomic regions from SNP 48934 to 49534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,469 DEBUG Processing 172/855 atomic regions from SNP 51377 to 51977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,500 DEBUG Processing 93/1130 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,555 DEBUG Processing 106/477 atomic regions from SNP 31551 to 32151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,596 DEBUG Processing 114/1020 atomic regions from SNP 33922 to 34522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,615 DEBUG Processing 165/899 atomic regions from SNP 49234 to 49834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,730 DEBUG Processing 173/855 atomic regions from SNP 51677 to 52277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,776 DEBUG Processing 94/1130 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,784 DEBUG Processing 107/477 atomic regions from SNP 31851 to 32451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,873 DEBUG Processing 115/1020 atomic regions from SNP 34222 to 34822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,883 DEBUG Processing 166/899 atomic regions from SNP 49534 to 50134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,012 DEBUG Processing 174/855 atomic regions from SNP 51977 to 52577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,027 DEBUG Processing 108/477 atomic regions from SNP 32151 to 32751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,062 DEBUG Processing 95/1130 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,142 DEBUG Processing 116/1020 atomic regions from SNP 34522 to 35122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,148 DEBUG Processing 167/899 atomic regions from SNP 49834 to 50434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,258 DEBUG Processing 175/855 atomic regions from SNP 52277 to 52877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,262 DEBUG Processing 109/477 atomic regions from SNP 32451 to 33051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,345 DEBUG Processing 96/1130 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,386 DEBUG Processing 168/899 atomic regions from SNP 50134 to 50734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,410 DEBUG Processing 117/1020 atomic regions from SNP 34822 to 35422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,510 DEBUG Processing 110/477 atomic regions from SNP 32751 to 33351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,528 DEBUG Processing 176/855 atomic regions from SNP 52577 to 53177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,629 DEBUG Processing 169/899 atomic regions from SNP 50434 to 51034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,632 DEBUG Processing 97/1130 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,681 DEBUG Processing 118/1020 atomic regions from SNP 35122 to 35722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,753 DEBUG Processing 111/477 atomic regions from SNP 33051 to 33651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,794 DEBUG Processing 177/855 atomic regions from SNP 52877 to 53477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,878 DEBUG Processing 170/899 atomic regions from SNP 50734 to 51334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,915 DEBUG Processing 98/1130 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,953 DEBUG Processing 119/1020 atomic regions from SNP 35422 to 36022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,987 DEBUG Processing 112/477 atomic regions from SNP 33351 to 33951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,047 DEBUG Processing 178/855 atomic regions from SNP 53177 to 53777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,125 DEBUG Processing 171/899 atomic regions from SNP 51034 to 51634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,193 DEBUG Processing 99/1130 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,209 DEBUG Processing 113/477 atomic regions from SNP 33651 to 34251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,224 DEBUG Processing 120/1020 atomic regions from SNP 35722 to 36322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,299 DEBUG Processing 179/855 atomic regions from SNP 53477 to 54077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,374 DEBUG Processing 172/899 atomic regions from SNP 51334 to 51934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,440 DEBUG Processing 114/477 atomic regions from SNP 33951 to 34551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,467 DEBUG Processing 100/1130 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,500 DEBUG Processing 121/1020 atomic regions from SNP 36022 to 36622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,554 DEBUG Processing 180/855 atomic regions from SNP 53777 to 54377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,636 DEBUG Processing 173/899 atomic regions from SNP 51634 to 52234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,678 DEBUG Processing 115/477 atomic regions from SNP 34251 to 34851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,740 DEBUG Processing 101/1130 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,766 DEBUG Processing 122/1020 atomic regions from SNP 36322 to 36922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,786 DEBUG Processing 181/855 atomic regions from SNP 54077 to 54677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,884 DEBUG Processing 174/899 atomic regions from SNP 51934 to 52534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,916 DEBUG Processing 116/477 atomic regions from SNP 34551 to 35151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,014 DEBUG Processing 102/1130 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,023 DEBUG Processing 182/855 atomic regions from SNP 54377 to 54977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,034 DEBUG Processing 123/1020 atomic regions from SNP 36622 to 37222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,123 DEBUG Processing 175/899 atomic regions from SNP 52234 to 52834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,146 DEBUG Processing 117/477 atomic regions from SNP 34851 to 35451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,267 DEBUG Processing 183/855 atomic regions from SNP 54677 to 55277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,294 DEBUG Processing 103/1130 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,305 DEBUG Processing 124/1020 atomic regions from SNP 36922 to 37522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,368 DEBUG Processing 176/899 atomic regions from SNP 52534 to 53134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,377 DEBUG Processing 118/477 atomic regions from SNP 35151 to 35751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,503 DEBUG Processing 184/855 atomic regions from SNP 54977 to 55577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,568 DEBUG Processing 104/1130 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,574 DEBUG Processing 125/1020 atomic regions from SNP 37222 to 37822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,608 DEBUG Processing 119/477 atomic regions from SNP 35451 to 36051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,610 DEBUG Processing 177/899 atomic regions from SNP 52834 to 53434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,752 DEBUG Processing 185/855 atomic regions from SNP 55277 to 55877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,842 DEBUG Processing 105/1130 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,843 DEBUG Processing 120/477 atomic regions from SNP 35751 to 36351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,847 DEBUG Processing 126/1020 atomic regions from SNP 37522 to 38122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,850 DEBUG Processing 178/899 atomic regions from SNP 53134 to 53734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,027 DEBUG Processing 186/855 atomic regions from SNP 55577 to 56177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,075 DEBUG Processing 121/477 atomic regions from SNP 36051 to 36651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,094 DEBUG Processing 179/899 atomic regions from SNP 53434 to 54034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,117 DEBUG Processing 106/1130 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,128 DEBUG Processing 127/1020 atomic regions from SNP 37822 to 38422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,297 DEBUG Processing 187/855 atomic regions from SNP 55877 to 56477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,306 DEBUG Processing 122/477 atomic regions from SNP 36351 to 36951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,339 DEBUG Processing 180/899 atomic regions from SNP 53734 to 54334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,397 DEBUG Processing 107/1130 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,435 DEBUG Processing 128/1020 atomic regions from SNP 38122 to 38722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,534 DEBUG Processing 123/477 atomic regions from SNP 36651 to 37251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,556 DEBUG Processing 188/855 atomic regions from SNP 56177 to 56777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,583 DEBUG Processing 181/899 atomic regions from SNP 54034 to 54634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,680 DEBUG Processing 108/1130 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,746 DEBUG Processing 129/1020 atomic regions from SNP 38422 to 39022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,760 DEBUG Processing 124/477 atomic regions from SNP 36951 to 37551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,787 DEBUG Processing 189/855 atomic regions from SNP 56477 to 57077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,823 DEBUG Processing 182/899 atomic regions from SNP 54334 to 54934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,958 DEBUG Processing 109/1130 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,988 DEBUG Processing 125/477 atomic regions from SNP 37251 to 37851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,020 DEBUG Processing 190/855 atomic regions from SNP 56777 to 57377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,058 DEBUG Processing 130/1020 atomic regions from SNP 38722 to 39322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,061 DEBUG Processing 183/899 atomic regions from SNP 54634 to 55234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,218 DEBUG Processing 126/477 atomic regions from SNP 37551 to 38151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,237 DEBUG Processing 110/1130 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,257 DEBUG Processing 191/855 atomic regions from SNP 57077 to 57677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,302 DEBUG Processing 184/899 atomic regions from SNP 54934 to 55534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,372 DEBUG Processing 131/1020 atomic regions from SNP 39022 to 39622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,450 DEBUG Processing 127/477 atomic regions from SNP 37851 to 38451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,492 DEBUG Processing 192/855 atomic regions from SNP 57377 to 57977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,512 DEBUG Processing 111/1130 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,547 DEBUG Processing 185/899 atomic regions from SNP 55234 to 55834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,682 DEBUG Processing 132/1020 atomic regions from SNP 39322 to 39922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,684 DEBUG Processing 128/477 atomic regions from SNP 38151 to 38751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,727 DEBUG Processing 193/855 atomic regions from SNP 57677 to 58277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,783 DEBUG Processing 112/1130 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,803 DEBUG Processing 186/899 atomic regions from SNP 55534 to 56134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,925 DEBUG Processing 129/477 atomic regions from SNP 38451 to 39051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,964 DEBUG Processing 194/855 atomic regions from SNP 57977 to 58577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,969 DEBUG Processing 133/1020 atomic regions from SNP 39622 to 40222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,038 DEBUG Processing 187/899 atomic regions from SNP 55834 to 56434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,047 DEBUG Processing 113/1130 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,164 DEBUG Processing 130/477 atomic regions from SNP 38751 to 39351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,204 DEBUG Processing 195/855 atomic regions from SNP 58277 to 58877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,259 DEBUG Processing 134/1020 atomic regions from SNP 39922 to 40522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,270 DEBUG Processing 188/899 atomic regions from SNP 56134 to 56734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,311 DEBUG Processing 114/1130 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,403 DEBUG Processing 131/477 atomic regions from SNP 39051 to 39651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,451 DEBUG Processing 196/855 atomic regions from SNP 58577 to 59177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,506 DEBUG Processing 189/899 atomic regions from SNP 56434 to 57034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,560 DEBUG Processing 135/1020 atomic regions from SNP 40222 to 40822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,577 DEBUG Processing 115/1130 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,639 DEBUG Processing 132/477 atomic regions from SNP 39351 to 39951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,700 DEBUG Processing 197/855 atomic regions from SNP 58877 to 59477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,751 DEBUG Processing 190/899 atomic regions from SNP 56734 to 57334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,851 DEBUG Processing 116/1130 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,859 DEBUG Processing 136/1020 atomic regions from SNP 40522 to 41122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,872 DEBUG Processing 133/477 atomic regions from SNP 39651 to 40251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,964 DEBUG Processing 198/855 atomic regions from SNP 59177 to 59777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,999 DEBUG Processing 191/899 atomic regions from SNP 57034 to 57634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,106 DEBUG Processing 134/477 atomic regions from SNP 39951 to 40551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,130 DEBUG Processing 117/1130 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,161 DEBUG Processing 137/1020 atomic regions from SNP 40822 to 41422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,210 DEBUG Processing 199/855 atomic regions from SNP 59477 to 60077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,244 DEBUG Processing 192/899 atomic regions from SNP 57334 to 57934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,342 DEBUG Processing 135/477 atomic regions from SNP 40251 to 40851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,412 DEBUG Processing 118/1130 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,452 DEBUG Processing 200/855 atomic regions from SNP 59777 to 60377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,474 DEBUG Processing 138/1020 atomic regions from SNP 41122 to 41722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,490 DEBUG Processing 193/899 atomic regions from SNP 57634 to 58234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,588 DEBUG Processing 136/477 atomic regions from SNP 40551 to 41151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,695 DEBUG Processing 201/855 atomic regions from SNP 60077 to 60677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,701 DEBUG Processing 119/1130 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,730 DEBUG Processing 194/899 atomic regions from SNP 57934 to 58534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,769 DEBUG Processing 139/1020 atomic regions from SNP 41422 to 42022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,819 DEBUG Processing 137/477 atomic regions from SNP 40851 to 41451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,937 DEBUG Processing 202/855 atomic regions from SNP 60377 to 60977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,977 DEBUG Processing 195/899 atomic regions from SNP 58234 to 58834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,982 DEBUG Processing 120/1130 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,045 DEBUG Processing 138/477 atomic regions from SNP 41151 to 41751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,065 DEBUG Processing 140/1020 atomic regions from SNP 41722 to 42322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,179 DEBUG Processing 203/855 atomic regions from SNP 60677 to 61277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,224 DEBUG Processing 196/899 atomic regions from SNP 58534 to 59134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,261 DEBUG Processing 121/1130 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,273 DEBUG Processing 139/477 atomic regions from SNP 41451 to 42051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,365 DEBUG Processing 141/1020 atomic regions from SNP 42022 to 42622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,417 DEBUG Processing 204/855 atomic regions from SNP 60977 to 61577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,477 DEBUG Processing 197/899 atomic regions from SNP 58834 to 59434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,508 DEBUG Processing 140/477 atomic regions from SNP 41751 to 42351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,542 DEBUG Processing 122/1130 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,651 DEBUG Processing 205/855 atomic regions from SNP 61277 to 61877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,657 DEBUG Processing 142/1020 atomic regions from SNP 42322 to 42922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,725 DEBUG Processing 198/899 atomic regions from SNP 59134 to 59734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,748 DEBUG Processing 141/477 atomic regions from SNP 42051 to 42651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,818 DEBUG Processing 123/1130 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,885 DEBUG Processing 206/855 atomic regions from SNP 61577 to 62177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,959 DEBUG Processing 143/1020 atomic regions from SNP 42622 to 43222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,972 DEBUG Processing 199/899 atomic regions from SNP 59434 to 60034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,983 DEBUG Processing 142/477 atomic regions from SNP 42351 to 42951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,091 DEBUG Processing 124/1130 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,121 DEBUG Processing 207/855 atomic regions from SNP 61877 to 62477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,214 DEBUG Processing 143/477 atomic regions from SNP 42651 to 43251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,214 DEBUG Processing 200/899 atomic regions from SNP 59734 to 60334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,260 DEBUG Processing 144/1020 atomic regions from SNP 42922 to 43522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,361 DEBUG Processing 208/855 atomic regions from SNP 62177 to 62777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,366 DEBUG Processing 125/1130 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,449 DEBUG Processing 144/477 atomic regions from SNP 42951 to 43551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,458 DEBUG Processing 201/899 atomic regions from SNP 60034 to 60634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,564 DEBUG Processing 145/1020 atomic regions from SNP 43222 to 43822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,601 DEBUG Processing 209/855 atomic regions from SNP 62477 to 63077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,642 DEBUG Processing 126/1130 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,693 DEBUG Processing 145/477 atomic regions from SNP 43251 to 43851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,711 DEBUG Processing 202/899 atomic regions from SNP 60334 to 60934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,836 DEBUG Processing 210/855 atomic regions from SNP 62777 to 63377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,854 DEBUG Processing 146/1020 atomic regions from SNP 43522 to 44122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,913 DEBUG Processing 127/1130 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,934 DEBUG Processing 146/477 atomic regions from SNP 43551 to 44151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,963 DEBUG Processing 203/899 atomic regions from SNP 60634 to 61234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,066 DEBUG Processing 211/855 atomic regions from SNP 63077 to 63677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,149 DEBUG Processing 147/1020 atomic regions from SNP 43822 to 44422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,171 DEBUG Processing 147/477 atomic regions from SNP 43851 to 44451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,187 DEBUG Processing 128/1130 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,218 DEBUG Processing 204/899 atomic regions from SNP 60934 to 61534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,303 DEBUG Processing 212/855 atomic regions from SNP 63377 to 63977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,396 DEBUG Processing 148/477 atomic regions from SNP 44151 to 44751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,446 DEBUG Processing 148/1020 atomic regions from SNP 44122 to 44722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,469 DEBUG Processing 129/1130 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,473 DEBUG Processing 205/899 atomic regions from SNP 61234 to 61834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,551 DEBUG Processing 213/855 atomic regions from SNP 63677 to 64277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,621 DEBUG Processing 149/477 atomic regions from SNP 44451 to 45051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,724 DEBUG Processing 206/899 atomic regions from SNP 61534 to 62134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,743 DEBUG Processing 149/1020 atomic regions from SNP 44422 to 45022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,751 DEBUG Processing 130/1130 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,796 DEBUG Processing 214/855 atomic regions from SNP 63977 to 64577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,843 DEBUG Processing 150/477 atomic regions from SNP 44751 to 45351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,966 DEBUG Processing 207/899 atomic regions from SNP 61834 to 62434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,034 DEBUG Processing 131/1130 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,043 DEBUG Processing 215/855 atomic regions from SNP 64277 to 64877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,046 DEBUG Processing 150/1020 atomic regions from SNP 44722 to 45322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,077 DEBUG Processing 151/477 atomic regions from SNP 45051 to 45651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,203 DEBUG Processing 208/899 atomic regions from SNP 62134 to 62734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,286 DEBUG Processing 216/855 atomic regions from SNP 64577 to 65177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,316 DEBUG Processing 152/477 atomic regions from SNP 45351 to 45951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,322 DEBUG Processing 132/1130 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,355 DEBUG Processing 151/1020 atomic regions from SNP 45022 to 45622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,441 DEBUG Processing 209/899 atomic regions from SNP 62434 to 63034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,533 DEBUG Processing 217/855 atomic regions from SNP 64877 to 65477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,552 DEBUG Processing 153/477 atomic regions from SNP 45651 to 46251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,606 DEBUG Processing 133/1130 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,652 DEBUG Processing 152/1020 atomic regions from SNP 45322 to 45922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,679 DEBUG Processing 210/899 atomic regions from SNP 62734 to 63334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,772 DEBUG Processing 218/855 atomic regions from SNP 65177 to 65777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,785 DEBUG Processing 154/477 atomic regions from SNP 45951 to 46551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,877 DEBUG Processing 134/1130 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,924 DEBUG Processing 211/899 atomic regions from SNP 63034 to 63634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,938 DEBUG Processing 153/1020 atomic regions from SNP 45622 to 46222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,014 DEBUG Processing 219/855 atomic regions from SNP 65477 to 66077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,019 DEBUG Processing 155/477 atomic regions from SNP 46251 to 46851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,147 DEBUG Processing 135/1130 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,166 DEBUG Processing 212/899 atomic regions from SNP 63334 to 63934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,225 DEBUG Processing 154/1020 atomic regions from SNP 45922 to 46522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,255 DEBUG Processing 156/477 atomic regions from SNP 46551 to 47151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,259 DEBUG Processing 220/855 atomic regions from SNP 65777 to 66377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,405 DEBUG Processing 213/899 atomic regions from SNP 63634 to 64234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,416 DEBUG Processing 136/1130 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,497 DEBUG Processing 157/477 atomic regions from SNP 46851 to 47451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,507 DEBUG Processing 221/855 atomic regions from SNP 66077 to 66677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,519 DEBUG Processing 155/1020 atomic regions from SNP 46222 to 46822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,636 DEBUG Processing 214/899 atomic regions from SNP 63934 to 64534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,685 DEBUG Processing 137/1130 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,739 DEBUG Processing 158/477 atomic regions from SNP 47151 to 47751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,760 DEBUG Processing 222/855 atomic regions from SNP 66377 to 66977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,798 DEBUG Processing 156/1020 atomic regions from SNP 46522 to 47122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,880 DEBUG Processing 215/899 atomic regions from SNP 64234 to 64834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,957 DEBUG Processing 138/1130 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,984 DEBUG Processing 159/477 atomic regions from SNP 47451 to 48051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,015 DEBUG Processing 223/855 atomic regions from SNP 66677 to 67277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,101 DEBUG Processing 157/1020 atomic regions from SNP 46822 to 47422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,117 DEBUG Processing 216/899 atomic regions from SNP 64534 to 65134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,219 DEBUG Processing 160/477 atomic regions from SNP 47751 to 48351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,224 DEBUG Processing 139/1130 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,257 DEBUG Processing 224/855 atomic regions from SNP 66977 to 67577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,359 DEBUG Processing 217/899 atomic regions from SNP 64834 to 65434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,404 DEBUG Processing 158/1020 atomic regions from SNP 47122 to 47722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,445 DEBUG Processing 161/477 atomic regions from SNP 48051 to 48651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,496 DEBUG Processing 140/1130 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,507 DEBUG Processing 225/855 atomic regions from SNP 67277 to 67877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,609 DEBUG Processing 218/899 atomic regions from SNP 65134 to 65734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,669 DEBUG Processing 162/477 atomic regions from SNP 48351 to 48951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,703 DEBUG Processing 159/1020 atomic regions from SNP 47422 to 48022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,744 DEBUG Processing 226/855 atomic regions from SNP 67577 to 68177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,771 DEBUG Processing 141/1130 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,857 DEBUG Processing 219/899 atomic regions from SNP 65434 to 66034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,898 DEBUG Processing 163/477 atomic regions from SNP 48651 to 49251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,977 DEBUG Processing 227/855 atomic regions from SNP 67877 to 68477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,999 DEBUG Processing 160/1020 atomic regions from SNP 47722 to 48322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,045 DEBUG Processing 142/1130 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,100 DEBUG Processing 220/899 atomic regions from SNP 65734 to 66334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,131 DEBUG Processing 164/477 atomic regions from SNP 48951 to 49551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,211 DEBUG Processing 228/855 atomic regions from SNP 68177 to 68777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,299 DEBUG Processing 161/1020 atomic regions from SNP 48022 to 48622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,319 DEBUG Processing 143/1130 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,341 DEBUG Processing 221/899 atomic regions from SNP 66034 to 66634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,361 DEBUG Processing 165/477 atomic regions from SNP 49251 to 49851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,368 DEBUG Segmenting atomic regions: 2025-01-31 09:45:27,452 DEBUG Processing 229/855 atomic regions from SNP 68477 to 69077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,489 DEBUG Processing 1/646 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,583 DEBUG Processing 222/899 atomic regions from SNP 66334 to 66934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,593 DEBUG Processing 166/477 atomic regions from SNP 49551 to 50151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,594 DEBUG Processing 144/1130 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,607 DEBUG Processing 162/1020 atomic regions from SNP 48322 to 48922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,699 DEBUG Processing 230/855 atomic regions from SNP 68777 to 69377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,767 DEBUG Processing 2/646 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,825 DEBUG Processing 167/477 atomic regions from SNP 49851 to 50451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,826 DEBUG Processing 223/899 atomic regions from SNP 66634 to 67234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,869 DEBUG Processing 145/1130 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,899 DEBUG Processing 163/1020 atomic regions from SNP 48622 to 49222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,932 DEBUG Processing 231/855 atomic regions from SNP 69077 to 69677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,038 DEBUG Processing 3/646 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,060 DEBUG Processing 168/477 atomic regions from SNP 50151 to 50751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,072 DEBUG Processing 224/899 atomic regions from SNP 66934 to 67534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,146 DEBUG Processing 146/1130 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,164 DEBUG Processing 232/855 atomic regions from SNP 69377 to 69977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,193 DEBUG Processing 164/1020 atomic regions from SNP 48922 to 49522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,295 DEBUG Processing 4/646 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,301 DEBUG Processing 169/477 atomic regions from SNP 50451 to 51051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,323 DEBUG Processing 225/899 atomic regions from SNP 67234 to 67834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,398 DEBUG Processing 233/855 atomic regions from SNP 69677 to 70277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,422 DEBUG Processing 147/1130 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,490 DEBUG Processing 165/1020 atomic regions from SNP 49222 to 49822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,537 DEBUG Processing 170/477 atomic regions from SNP 50751 to 51351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,572 DEBUG Processing 226/899 atomic regions from SNP 67534 to 68134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,578 DEBUG Processing 5/646 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,638 DEBUG Processing 234/855 atomic regions from SNP 69977 to 70577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,695 DEBUG Processing 148/1130 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,768 DEBUG Processing 171/477 atomic regions from SNP 51051 to 51651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,788 DEBUG Processing 166/1020 atomic regions from SNP 49522 to 50122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,819 DEBUG Processing 227/899 atomic regions from SNP 67834 to 68434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,868 DEBUG Processing 6/646 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,881 DEBUG Processing 235/855 atomic regions from SNP 70277 to 70877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,973 DEBUG Processing 149/1130 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,001 DEBUG Processing 172/477 atomic regions from SNP 51351 to 51951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,063 DEBUG Processing 228/899 atomic regions from SNP 68134 to 68734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,086 DEBUG Processing 167/1020 atomic regions from SNP 49822 to 50422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,117 DEBUG Processing 236/855 atomic regions from SNP 70577 to 71177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,131 DEBUG Processing 7/646 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,236 DEBUG Processing 173/477 atomic regions from SNP 51651 to 52251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,247 DEBUG Processing 150/1130 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,312 DEBUG Processing 229/899 atomic regions from SNP 68434 to 69034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,351 DEBUG Processing 237/855 atomic regions from SNP 70877 to 71477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,381 DEBUG Processing 168/1020 atomic regions from SNP 50122 to 50722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,395 DEBUG Processing 8/646 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,469 DEBUG Processing 174/477 atomic regions from SNP 51951 to 52551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,528 DEBUG Processing 151/1130 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,564 DEBUG Processing 230/899 atomic regions from SNP 68734 to 69334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,593 DEBUG Processing 238/855 atomic regions from SNP 71177 to 71777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,662 DEBUG Processing 9/646 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,673 DEBUG Processing 169/1020 atomic regions from SNP 50422 to 51022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,694 DEBUG Processing 175/477 atomic regions from SNP 52251 to 52851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,814 DEBUG Processing 152/1130 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,817 DEBUG Processing 231/899 atomic regions from SNP 69034 to 69634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,841 DEBUG Processing 239/855 atomic regions from SNP 71477 to 72077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,915 DEBUG Processing 176/477 atomic regions from SNP 52551 to 53151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,919 DEBUG Processing 10/646 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,970 DEBUG Processing 170/1020 atomic regions from SNP 50722 to 51322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,072 DEBUG Processing 232/899 atomic regions from SNP 69334 to 69934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,087 DEBUG Processing 240/855 atomic regions from SNP 71777 to 72377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,103 DEBUG Processing 153/1130 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,147 DEBUG Processing 177/477 atomic regions from SNP 52851 to 53451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,160 DEBUG Processing 11/646 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,282 DEBUG Processing 171/1020 atomic regions from SNP 51022 to 51622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,332 DEBUG Processing 233/899 atomic regions from SNP 69634 to 70234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,341 DEBUG Processing 241/855 atomic regions from SNP 72077 to 72677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,386 DEBUG Processing 178/477 atomic regions from SNP 53151 to 53751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,392 DEBUG Processing 154/1130 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,415 DEBUG Processing 12/646 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,594 DEBUG Processing 234/899 atomic regions from SNP 69934 to 70534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,598 DEBUG Processing 242/855 atomic regions from SNP 72377 to 72977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,598 DEBUG Processing 172/1020 atomic regions from SNP 51322 to 51922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,635 DEBUG Processing 179/477 atomic regions from SNP 53451 to 54051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,664 DEBUG Processing 13/646 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,687 DEBUG Processing 155/1130 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,850 DEBUG Processing 243/855 atomic regions from SNP 72677 to 73277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,851 DEBUG Processing 235/899 atomic regions from SNP 70234 to 70834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,876 DEBUG Processing 180/477 atomic regions from SNP 53751 to 54351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,904 DEBUG Processing 173/1020 atomic regions from SNP 51622 to 52222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,925 DEBUG Processing 14/646 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,960 DEBUG Processing 156/1130 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,098 DEBUG Processing 244/855 atomic regions from SNP 72977 to 73577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,102 DEBUG Processing 236/899 atomic regions from SNP 70534 to 71134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,117 DEBUG Processing 181/477 atomic regions from SNP 54051 to 54651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,202 DEBUG Processing 15/646 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,217 DEBUG Processing 174/1020 atomic regions from SNP 51922 to 52522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,229 DEBUG Processing 157/1130 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,341 DEBUG Processing 245/855 atomic regions from SNP 73277 to 73877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,354 DEBUG Processing 237/899 atomic regions from SNP 70834 to 71434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,357 DEBUG Processing 182/477 atomic regions from SNP 54351 to 54951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,473 DEBUG Processing 16/646 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,506 DEBUG Processing 158/1130 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,529 DEBUG Processing 175/1020 atomic regions from SNP 52222 to 52822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,584 DEBUG Processing 246/855 atomic regions from SNP 73577 to 74177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,603 DEBUG Processing 183/477 atomic regions from SNP 54651 to 55251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,606 DEBUG Processing 238/899 atomic regions from SNP 71134 to 71734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,754 DEBUG Processing 17/646 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,787 DEBUG Processing 159/1130 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,828 DEBUG Processing 247/855 atomic regions from SNP 73877 to 74477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,842 DEBUG Processing 184/477 atomic regions from SNP 54951 to 55551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,843 DEBUG Processing 176/1020 atomic regions from SNP 52522 to 53122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,862 DEBUG Processing 239/899 atomic regions from SNP 71434 to 72034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,024 DEBUG Processing 18/646 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,060 DEBUG Processing 160/1130 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,070 DEBUG Processing 248/855 atomic regions from SNP 74177 to 74777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,075 DEBUG Processing 185/477 atomic regions from SNP 55251 to 55851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,105 DEBUG Processing 240/899 atomic regions from SNP 71734 to 72334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,155 DEBUG Processing 177/1020 atomic regions from SNP 52822 to 53422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,295 DEBUG Processing 19/646 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,310 DEBUG Processing 186/477 atomic regions from SNP 55551 to 56151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,315 DEBUG Processing 249/855 atomic regions from SNP 74477 to 75077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,338 DEBUG Processing 161/1130 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,353 DEBUG Processing 241/899 atomic regions from SNP 72034 to 72634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,466 DEBUG Processing 178/1020 atomic regions from SNP 53122 to 53722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,547 DEBUG Processing 187/477 atomic regions from SNP 55851 to 56451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,562 DEBUG Processing 250/855 atomic regions from SNP 74777 to 75377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,576 DEBUG Processing 20/646 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,613 DEBUG Processing 242/899 atomic regions from SNP 72334 to 72934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,625 DEBUG Processing 162/1130 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,763 DEBUG Processing 179/1020 atomic regions from SNP 53422 to 54022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,779 DEBUG Processing 188/477 atomic regions from SNP 56151 to 56751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,808 DEBUG Processing 251/855 atomic regions from SNP 75077 to 75677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,864 DEBUG Processing 21/646 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,869 DEBUG Processing 243/899 atomic regions from SNP 72634 to 73234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,913 DEBUG Processing 163/1130 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,010 DEBUG Processing 189/477 atomic regions from SNP 56451 to 57051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,046 DEBUG Processing 252/855 atomic regions from SNP 75377 to 75977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,059 DEBUG Processing 180/1020 atomic regions from SNP 53722 to 54322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,124 DEBUG Processing 244/899 atomic regions from SNP 72934 to 73534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,142 DEBUG Processing 22/646 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,199 DEBUG Processing 164/1130 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,233 DEBUG Processing 190/477 atomic regions from SNP 56751 to 57351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,282 DEBUG Processing 253/855 atomic regions from SNP 75677 to 76277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,348 DEBUG Processing 181/1020 atomic regions from SNP 54022 to 54622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,379 DEBUG Processing 245/899 atomic regions from SNP 73234 to 73834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,429 DEBUG Processing 23/646 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,468 DEBUG Processing 191/477 atomic regions from SNP 57051 to 57651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,482 DEBUG Processing 165/1130 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,517 DEBUG Processing 254/855 atomic regions from SNP 75977 to 76577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,630 DEBUG Processing 246/899 atomic regions from SNP 73534 to 74134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,636 DEBUG Processing 182/1020 atomic regions from SNP 54322 to 54922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,712 DEBUG Processing 192/477 atomic regions from SNP 57351 to 57951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,719 DEBUG Processing 24/646 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,752 DEBUG Processing 255/855 atomic regions from SNP 76277 to 76877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,760 DEBUG Processing 166/1130 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,878 DEBUG Processing 247/899 atomic regions from SNP 73834 to 74434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,929 DEBUG Processing 183/1020 atomic regions from SNP 54622 to 55222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,967 DEBUG Processing 193/477 atomic regions from SNP 57651 to 58251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,997 DEBUG Processing 256/855 atomic regions from SNP 76577 to 77177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,008 DEBUG Processing 25/646 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,043 DEBUG Processing 167/1130 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,132 DEBUG Processing 248/899 atomic regions from SNP 74134 to 74734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,228 DEBUG Processing 194/477 atomic regions from SNP 57951 to 58551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,234 DEBUG Processing 184/1020 atomic regions from SNP 54922 to 55522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,246 DEBUG Processing 257/855 atomic regions from SNP 76877 to 77477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,290 DEBUG Processing 26/646 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,318 DEBUG Processing 168/1130 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,377 DEBUG Processing 249/899 atomic regions from SNP 74434 to 75034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,489 DEBUG Processing 258/855 atomic regions from SNP 77177 to 77777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,491 DEBUG Processing 195/477 atomic regions from SNP 58251 to 58851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,532 DEBUG Processing 185/1020 atomic regions from SNP 55222 to 55822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,564 DEBUG Processing 27/646 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,590 DEBUG Processing 169/1130 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,621 DEBUG Processing 250/899 atomic regions from SNP 74734 to 75334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,736 DEBUG Processing 259/855 atomic regions from SNP 77477 to 78077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,738 DEBUG Processing 196/477 atomic regions from SNP 58551 to 59151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,813 DEBUG Processing 186/1020 atomic regions from SNP 55522 to 56122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,816 DEBUG Processing 28/646 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,861 DEBUG Processing 170/1130 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,867 DEBUG Processing 251/899 atomic regions from SNP 75034 to 75634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,975 DEBUG Processing 197/477 atomic regions from SNP 58851 to 59451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,978 DEBUG Processing 260/855 atomic regions from SNP 77777 to 78377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,066 DEBUG Processing 29/646 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,091 DEBUG Processing 187/1020 atomic regions from SNP 55822 to 56422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,110 DEBUG Processing 252/899 atomic regions from SNP 75334 to 75934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,136 DEBUG Processing 171/1130 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,212 DEBUG Processing 198/477 atomic regions from SNP 59151 to 59751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,218 DEBUG Processing 261/855 atomic regions from SNP 78077 to 78677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,318 DEBUG Processing 30/646 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,354 DEBUG Processing 253/899 atomic regions from SNP 75634 to 76234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,378 DEBUG Processing 188/1020 atomic regions from SNP 56122 to 56722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,414 DEBUG Processing 172/1130 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,446 DEBUG Processing 199/477 atomic regions from SNP 59451 to 60051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,457 DEBUG Processing 262/855 atomic regions from SNP 78377 to 78977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,565 DEBUG Processing 31/646 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,601 DEBUG Processing 254/899 atomic regions from SNP 75934 to 76534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,661 DEBUG Processing 189/1020 atomic regions from SNP 56422 to 57022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,679 DEBUG Processing 200/477 atomic regions from SNP 59751 to 60351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,693 DEBUG Processing 263/855 atomic regions from SNP 78677 to 79277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,697 DEBUG Processing 173/1130 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,814 DEBUG Processing 32/646 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,852 DEBUG Processing 255/899 atomic regions from SNP 76234 to 76834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,915 DEBUG Processing 201/477 atomic regions from SNP 60051 to 60651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,932 DEBUG Processing 264/855 atomic regions from SNP 78977 to 79577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,958 DEBUG Processing 190/1020 atomic regions from SNP 56722 to 57322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,001 DEBUG Processing 174/1130 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,080 DEBUG Processing 33/646 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,111 DEBUG Processing 256/899 atomic regions from SNP 76534 to 77134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,163 DEBUG Processing 202/477 atomic regions from SNP 60351 to 60951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,179 DEBUG Processing 265/855 atomic regions from SNP 79277 to 79877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,258 DEBUG Processing 191/1020 atomic regions from SNP 57022 to 57622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,285 DEBUG Processing 175/1130 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,348 DEBUG Processing 34/646 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,359 DEBUG Processing 257/899 atomic regions from SNP 76834 to 77434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,430 DEBUG Processing 203/477 atomic regions from SNP 60651 to 61251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,431 DEBUG Processing 266/855 atomic regions from SNP 79577 to 80177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,536 DEBUG Processing 192/1020 atomic regions from SNP 57322 to 57922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,563 DEBUG Processing 176/1130 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,592 DEBUG Processing 35/646 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,606 DEBUG Processing 258/899 atomic regions from SNP 77134 to 77734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,683 DEBUG Processing 267/855 atomic regions from SNP 79877 to 80477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,698 DEBUG Processing 204/477 atomic regions from SNP 60951 to 61551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,833 DEBUG Processing 193/1020 atomic regions from SNP 57622 to 58222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,833 DEBUG Processing 36/646 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,851 DEBUG Processing 259/899 atomic regions from SNP 77434 to 78034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,853 DEBUG Processing 177/1130 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,926 DEBUG Processing 268/855 atomic regions from SNP 80177 to 80777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,970 DEBUG Processing 205/477 atomic regions from SNP 61251 to 61851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,078 DEBUG Processing 37/646 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,100 DEBUG Processing 260/899 atomic regions from SNP 77734 to 78334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,133 DEBUG Processing 194/1020 atomic regions from SNP 57922 to 58522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,147 DEBUG Processing 178/1130 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,169 DEBUG Processing 269/855 atomic regions from SNP 80477 to 81077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,245 DEBUG Processing 206/477 atomic regions from SNP 61551 to 62151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,326 DEBUG Processing 38/646 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,349 DEBUG Processing 261/899 atomic regions from SNP 78034 to 78634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,411 DEBUG Processing 270/855 atomic regions from SNP 80777 to 81377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,429 DEBUG Processing 195/1020 atomic regions from SNP 58222 to 58822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,452 DEBUG Processing 179/1130 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,516 DEBUG Processing 207/477 atomic regions from SNP 61851 to 62451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,577 DEBUG Processing 39/646 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,606 DEBUG Processing 262/899 atomic regions from SNP 78334 to 78934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,654 DEBUG Processing 271/855 atomic regions from SNP 81077 to 81677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,714 DEBUG Processing 196/1020 atomic regions from SNP 58522 to 59122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,746 DEBUG Processing 180/1130 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,784 DEBUG Processing 208/477 atomic regions from SNP 62151 to 62751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,830 DEBUG Processing 40/646 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,862 DEBUG Processing 263/899 atomic regions from SNP 78634 to 79234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,897 DEBUG Processing 272/855 atomic regions from SNP 81377 to 81977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,986 DEBUG Processing 197/1020 atomic regions from SNP 58822 to 59422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,040 DEBUG Processing 209/477 atomic regions from SNP 62451 to 63051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,055 DEBUG Processing 181/1130 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,079 DEBUG Processing 41/646 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,117 DEBUG Processing 264/899 atomic regions from SNP 78934 to 79534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,146 DEBUG Processing 273/855 atomic regions from SNP 81677 to 82277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,270 DEBUG Processing 198/1020 atomic regions from SNP 59122 to 59722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,312 DEBUG Processing 210/477 atomic regions from SNP 62751 to 63351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,320 DEBUG Processing 42/646 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,345 DEBUG Processing 182/1130 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,367 DEBUG Processing 265/899 atomic regions from SNP 79234 to 79834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,388 DEBUG Processing 274/855 atomic regions from SNP 81977 to 82577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,548 DEBUG Processing 199/1020 atomic regions from SNP 59422 to 60022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,561 DEBUG Processing 43/646 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,568 DEBUG Processing 211/477 atomic regions from SNP 63051 to 63651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,625 DEBUG Processing 183/1130 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,627 DEBUG Processing 266/899 atomic regions from SNP 79534 to 80134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,630 DEBUG Processing 275/855 atomic regions from SNP 82277 to 82877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,806 DEBUG Processing 44/646 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,809 DEBUG Processing 212/477 atomic regions from SNP 63351 to 63951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,822 DEBUG Processing 200/1020 atomic regions from SNP 59722 to 60322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,871 DEBUG Processing 276/855 atomic regions from SNP 82577 to 83177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,895 DEBUG Processing 267/899 atomic regions from SNP 79834 to 80434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,905 DEBUG Processing 184/1130 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,058 DEBUG Processing 45/646 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,066 DEBUG Processing 213/477 atomic regions from SNP 63651 to 64251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,101 DEBUG Processing 201/1020 atomic regions from SNP 60022 to 60622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,118 DEBUG Processing 277/855 atomic regions from SNP 82877 to 83477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,181 DEBUG Processing 185/1130 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,182 DEBUG Processing 268/899 atomic regions from SNP 80134 to 80734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,309 DEBUG Processing 46/646 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,316 DEBUG Processing 214/477 atomic regions from SNP 63951 to 64551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,371 DEBUG Processing 278/855 atomic regions from SNP 83177 to 83777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,386 DEBUG Processing 202/1020 atomic regions from SNP 60322 to 60922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,461 DEBUG Processing 186/1130 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,467 DEBUG Processing 269/899 atomic regions from SNP 80434 to 81034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,562 DEBUG Processing 215/477 atomic regions from SNP 64251 to 64851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,563 DEBUG Processing 47/646 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,625 DEBUG Processing 279/855 atomic regions from SNP 83477 to 84077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,668 DEBUG Processing 203/1020 atomic regions from SNP 60622 to 61222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,742 DEBUG Processing 187/1130 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,750 DEBUG Processing 270/899 atomic regions from SNP 80734 to 81334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,807 DEBUG Processing 48/646 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,812 DEBUG Processing 216/477 atomic regions from SNP 64551 to 65151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,893 DEBUG Processing 280/855 atomic regions from SNP 83777 to 84377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,950 DEBUG Processing 204/1020 atomic regions from SNP 60922 to 61522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,030 DEBUG Processing 271/899 atomic regions from SNP 81034 to 81634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,045 DEBUG Processing 49/646 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,046 DEBUG Processing 188/1130 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,066 DEBUG Processing 217/477 atomic regions from SNP 64851 to 65451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,155 DEBUG Processing 281/855 atomic regions from SNP 84077 to 84677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,229 DEBUG Processing 205/1020 atomic regions from SNP 61222 to 61822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,286 DEBUG Processing 50/646 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,286 DEBUG Processing 272/899 atomic regions from SNP 81334 to 81934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,298 DEBUG Processing 218/477 atomic regions from SNP 65151 to 65751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,359 DEBUG Processing 189/1130 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,409 DEBUG Processing 282/855 atomic regions from SNP 84377 to 84977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,521 DEBUG Processing 206/1020 atomic regions from SNP 61522 to 62122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,531 DEBUG Processing 219/477 atomic regions from SNP 65451 to 66051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,538 DEBUG Processing 51/646 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,541 DEBUG Processing 273/899 atomic regions from SNP 81634 to 82234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,652 DEBUG Processing 283/855 atomic regions from SNP 84677 to 85277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,673 DEBUG Processing 190/1130 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,773 DEBUG Processing 220/477 atomic regions from SNP 65751 to 66351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,793 DEBUG Processing 52/646 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,803 DEBUG Processing 207/1020 atomic regions from SNP 61822 to 62422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,805 DEBUG Processing 274/899 atomic regions from SNP 81934 to 82534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,894 DEBUG Processing 284/855 atomic regions from SNP 84977 to 85577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,995 DEBUG Processing 191/1130 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,025 DEBUG Processing 221/477 atomic regions from SNP 66051 to 66651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,046 DEBUG Processing 53/646 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,066 DEBUG Processing 275/899 atomic regions from SNP 82234 to 82834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,103 DEBUG Processing 208/1020 atomic regions from SNP 62122 to 62722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,132 DEBUG Processing 285/855 atomic regions from SNP 85277 to 85877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,270 DEBUG Processing 222/477 atomic regions from SNP 66351 to 66951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,292 DEBUG Processing 54/646 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,315 DEBUG Processing 192/1130 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,328 DEBUG Processing 276/899 atomic regions from SNP 82534 to 83134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,377 DEBUG Processing 286/855 atomic regions from SNP 85577 to 86177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,388 DEBUG Processing 209/1020 atomic regions from SNP 62422 to 63022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,511 DEBUG Processing 223/477 atomic regions from SNP 66651 to 67251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,536 DEBUG Processing 55/646 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,596 DEBUG Processing 277/899 atomic regions from SNP 82834 to 83434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,628 DEBUG Processing 287/855 atomic regions from SNP 85877 to 86477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,643 DEBUG Processing 193/1130 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,669 DEBUG Processing 210/1020 atomic regions from SNP 62722 to 63322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,737 DEBUG Processing 224/477 atomic regions from SNP 66951 to 67551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,773 DEBUG Processing 56/646 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,855 DEBUG Processing 278/899 atomic regions from SNP 83134 to 83734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,882 DEBUG Processing 288/855 atomic regions from SNP 86177 to 86777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,948 DEBUG Processing 211/1020 atomic regions from SNP 63022 to 63622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,958 DEBUG Processing 194/1130 atomic regions from SNP 58093 to 58693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,969 DEBUG Processing 225/477 atomic regions from SNP 67251 to 67851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,014 DEBUG Processing 57/646 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,107 DEBUG Processing 279/899 atomic regions from SNP 83434 to 84034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,127 DEBUG Processing 289/855 atomic regions from SNP 86477 to 87077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,239 DEBUG Processing 226/477 atomic regions from SNP 67551 to 68151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,247 DEBUG Processing 212/1020 atomic regions from SNP 63322 to 63922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,248 DEBUG Processing 195/1130 atomic regions from SNP 58393 to 58993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,267 DEBUG Processing 58/646 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,355 DEBUG Processing 280/899 atomic regions from SNP 83734 to 84334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,367 DEBUG Processing 290/855 atomic regions from SNP 86777 to 87377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,489 DEBUG Processing 227/477 atomic regions from SNP 67851 to 68451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,520 DEBUG Processing 59/646 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,548 DEBUG Processing 196/1130 atomic regions from SNP 58693 to 59293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,556 DEBUG Processing 213/1020 atomic regions from SNP 63622 to 64222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,603 DEBUG Processing 281/899 atomic regions from SNP 84034 to 84634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,611 DEBUG Processing 291/855 atomic regions from SNP 87077 to 87677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,728 DEBUG Processing 228/477 atomic regions from SNP 68151 to 68751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,766 DEBUG Processing 60/646 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,849 DEBUG Processing 214/1020 atomic regions from SNP 63922 to 64522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,850 DEBUG Processing 197/1130 atomic regions from SNP 58993 to 59593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,853 DEBUG Processing 282/899 atomic regions from SNP 84334 to 84934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,856 DEBUG Processing 292/855 atomic regions from SNP 87377 to 87977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,967 DEBUG Processing 229/477 atomic regions from SNP 68451 to 69051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,011 DEBUG Processing 61/646 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,098 DEBUG Processing 293/855 atomic regions from SNP 87677 to 88277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,103 DEBUG Processing 283/899 atomic regions from SNP 84634 to 85234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,132 DEBUG Processing 198/1130 atomic regions from SNP 59293 to 59893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,145 DEBUG Processing 215/1020 atomic regions from SNP 64222 to 64822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,206 DEBUG Processing 230/477 atomic regions from SNP 68751 to 69351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,260 DEBUG Processing 62/646 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,339 DEBUG Processing 294/855 atomic regions from SNP 87977 to 88577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,352 DEBUG Processing 284/899 atomic regions from SNP 84934 to 85534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,421 DEBUG Processing 199/1130 atomic regions from SNP 59593 to 60193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,434 DEBUG Processing 216/1020 atomic regions from SNP 64522 to 65122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,442 DEBUG Processing 231/477 atomic regions from SNP 69051 to 69651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,512 DEBUG Processing 63/646 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,581 DEBUG Processing 295/855 atomic regions from SNP 88277 to 88877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,601 DEBUG Processing 285/899 atomic regions from SNP 85234 to 85834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,676 DEBUG Processing 232/477 atomic regions from SNP 69351 to 69951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,704 DEBUG Processing 217/1020 atomic regions from SNP 64822 to 65422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,727 DEBUG Processing 200/1130 atomic regions from SNP 59893 to 60493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,768 DEBUG Processing 64/646 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,833 DEBUG Processing 296/855 atomic regions from SNP 88577 to 89177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,862 DEBUG Processing 286/899 atomic regions from SNP 85534 to 86134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,912 DEBUG Processing 233/477 atomic regions from SNP 69651 to 70251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,977 DEBUG Processing 218/1020 atomic regions from SNP 65122 to 65722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,016 DEBUG Processing 65/646 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,027 DEBUG Processing 201/1130 atomic regions from SNP 60193 to 60793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,085 DEBUG Processing 297/855 atomic regions from SNP 88877 to 89477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,114 DEBUG Processing 287/899 atomic regions from SNP 85834 to 86434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,150 DEBUG Processing 234/477 atomic regions from SNP 69951 to 70551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,249 DEBUG Processing 219/1020 atomic regions from SNP 65422 to 66022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,264 DEBUG Processing 66/646 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,307 DEBUG Processing 202/1130 atomic regions from SNP 60493 to 61093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,338 DEBUG Processing 298/855 atomic regions from SNP 89177 to 89777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,365 DEBUG Processing 288/899 atomic regions from SNP 86134 to 86734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,391 DEBUG Processing 235/477 atomic regions from SNP 70251 to 70851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,514 DEBUG Processing 67/646 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,524 DEBUG Processing 220/1020 atomic regions from SNP 65722 to 66322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,582 DEBUG Processing 203/1130 atomic regions from SNP 60793 to 61393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,585 DEBUG Processing 299/855 atomic regions from SNP 89477 to 90077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,625 DEBUG Processing 289/899 atomic regions from SNP 86434 to 87034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,631 DEBUG Processing 236/477 atomic regions from SNP 70551 to 71151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,765 DEBUG Processing 68/646 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,804 DEBUG Processing 221/1020 atomic regions from SNP 66022 to 66622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,831 DEBUG Processing 300/855 atomic regions from SNP 89777 to 90377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,858 DEBUG Processing 204/1130 atomic regions from SNP 61093 to 61693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,868 DEBUG Processing 237/477 atomic regions from SNP 70851 to 71451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,899 DEBUG Processing 290/899 atomic regions from SNP 86734 to 87334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,016 DEBUG Processing 69/646 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,080 DEBUG Processing 301/855 atomic regions from SNP 90077 to 90677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,086 DEBUG Processing 222/1020 atomic regions from SNP 66322 to 66922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,104 DEBUG Processing 238/477 atomic regions from SNP 71151 to 71751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,142 DEBUG Processing 205/1130 atomic regions from SNP 61393 to 61993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,153 DEBUG Processing 291/899 atomic regions from SNP 87034 to 87634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,262 DEBUG Processing 70/646 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,324 DEBUG Processing 302/855 atomic regions from SNP 90377 to 90977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,341 DEBUG Processing 239/477 atomic regions from SNP 71451 to 72051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,367 DEBUG Processing 223/1020 atomic regions from SNP 66622 to 67222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,404 DEBUG Processing 292/899 atomic regions from SNP 87334 to 87934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,445 DEBUG Processing 206/1130 atomic regions from SNP 61693 to 62293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,505 DEBUG Processing 71/646 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,567 DEBUG Processing 303/855 atomic regions from SNP 90677 to 91277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,577 DEBUG Processing 240/477 atomic regions from SNP 71751 to 72351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,649 DEBUG Processing 224/1020 atomic regions from SNP 66922 to 67522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,659 DEBUG Processing 293/899 atomic regions from SNP 87634 to 88234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,737 DEBUG Processing 207/1130 atomic regions from SNP 61993 to 62593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,753 DEBUG Processing 72/646 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,810 DEBUG Processing 241/477 atomic regions from SNP 72051 to 72651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,812 DEBUG Processing 304/855 atomic regions from SNP 90977 to 91577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,912 DEBUG Processing 294/899 atomic regions from SNP 87934 to 88534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,924 DEBUG Processing 225/1020 atomic regions from SNP 67222 to 67822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,008 DEBUG Processing 73/646 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,018 DEBUG Processing 208/1130 atomic regions from SNP 62293 to 62893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,048 DEBUG Processing 242/477 atomic regions from SNP 72351 to 72951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,060 DEBUG Processing 305/855 atomic regions from SNP 91277 to 91877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,166 DEBUG Processing 295/899 atomic regions from SNP 88234 to 88834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,198 DEBUG Processing 226/1020 atomic regions from SNP 67522 to 68122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,258 DEBUG Processing 74/646 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,292 DEBUG Processing 243/477 atomic regions from SNP 72651 to 73251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,302 DEBUG Processing 306/855 atomic regions from SNP 91577 to 92177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,312 DEBUG Processing 209/1130 atomic regions from SNP 62593 to 63193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,413 DEBUG Processing 296/899 atomic regions from SNP 88534 to 89134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,469 DEBUG Processing 227/1020 atomic regions from SNP 67822 to 68422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,504 DEBUG Processing 75/646 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,522 DEBUG Processing 244/477 atomic regions from SNP 72951 to 73551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,545 DEBUG Processing 307/855 atomic regions from SNP 91877 to 92477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,614 DEBUG Processing 210/1130 atomic regions from SNP 62893 to 63493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,662 DEBUG Processing 297/899 atomic regions from SNP 88834 to 89434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,743 DEBUG Processing 228/1020 atomic regions from SNP 68122 to 68722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,749 DEBUG Processing 76/646 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,751 DEBUG Processing 245/477 atomic regions from SNP 73251 to 73851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,787 DEBUG Processing 308/855 atomic regions from SNP 92177 to 92777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,899 DEBUG Processing 211/1130 atomic regions from SNP 63193 to 63793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,919 DEBUG Processing 298/899 atomic regions from SNP 89134 to 89734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,994 DEBUG Processing 246/477 atomic regions from SNP 73551 to 74151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,003 DEBUG Processing 77/646 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,026 DEBUG Processing 229/1020 atomic regions from SNP 68422 to 69022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,036 DEBUG Processing 309/855 atomic regions from SNP 92477 to 93077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,164 DEBUG Processing 299/899 atomic regions from SNP 89434 to 90034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,170 DEBUG Processing 212/1130 atomic regions from SNP 63493 to 64093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,231 DEBUG Processing 247/477 atomic regions from SNP 73851 to 74451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,247 DEBUG Processing 78/646 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,278 DEBUG Processing 310/855 atomic regions from SNP 92777 to 93377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,299 DEBUG Processing 230/1020 atomic regions from SNP 68722 to 69322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,408 DEBUG Processing 300/899 atomic regions from SNP 89734 to 90334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,444 DEBUG Processing 213/1130 atomic regions from SNP 63793 to 64393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,467 DEBUG Processing 248/477 atomic regions from SNP 74151 to 74751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,493 DEBUG Processing 79/646 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,523 DEBUG Processing 311/855 atomic regions from SNP 93077 to 93677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,575 DEBUG Processing 231/1020 atomic regions from SNP 69022 to 69622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,656 DEBUG Processing 301/899 atomic regions from SNP 90034 to 90634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,694 DEBUG Processing 249/477 atomic regions from SNP 74451 to 75051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,715 DEBUG Processing 214/1130 atomic regions from SNP 64093 to 64693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,737 DEBUG Processing 80/646 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,762 DEBUG Processing 312/855 atomic regions from SNP 93377 to 93977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,848 DEBUG Processing 232/1020 atomic regions from SNP 69322 to 69922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,907 DEBUG Processing 302/899 atomic regions from SNP 90334 to 90934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,929 DEBUG Processing 250/477 atomic regions from SNP 74751 to 75351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,984 DEBUG Processing 81/646 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,991 DEBUG Processing 215/1130 atomic regions from SNP 64393 to 64993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,003 DEBUG Processing 313/855 atomic regions from SNP 93677 to 94277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,133 DEBUG Processing 233/1020 atomic regions from SNP 69622 to 70222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,166 DEBUG Processing 303/899 atomic regions from SNP 90634 to 91234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,174 DEBUG Processing 251/477 atomic regions from SNP 75051 to 75651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,234 DEBUG Processing 82/646 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,242 DEBUG Processing 314/855 atomic regions from SNP 93977 to 94577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,264 DEBUG Processing 216/1130 atomic regions from SNP 64693 to 65293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,407 DEBUG Processing 234/1020 atomic regions from SNP 69922 to 70522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,421 DEBUG Processing 252/477 atomic regions from SNP 75351 to 75951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,426 DEBUG Processing 304/899 atomic regions from SNP 90934 to 91534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,484 DEBUG Processing 83/646 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,489 DEBUG Processing 315/855 atomic regions from SNP 94277 to 94877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,539 DEBUG Processing 217/1130 atomic regions from SNP 64993 to 65593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,658 DEBUG Processing 253/477 atomic regions from SNP 75651 to 76251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,678 DEBUG Processing 305/899 atomic regions from SNP 91234 to 91834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,680 DEBUG Processing 235/1020 atomic regions from SNP 70222 to 70822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,739 DEBUG Processing 316/855 atomic regions from SNP 94577 to 95177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,740 DEBUG Processing 84/646 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,813 DEBUG Processing 218/1130 atomic regions from SNP 65293 to 65893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,889 DEBUG Processing 254/477 atomic regions from SNP 75951 to 76551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,928 DEBUG Processing 306/899 atomic regions from SNP 91534 to 92134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,950 DEBUG Processing 236/1020 atomic regions from SNP 70522 to 71122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,987 DEBUG Processing 85/646 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,993 DEBUG Processing 317/855 atomic regions from SNP 94877 to 95477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,088 DEBUG Processing 219/1130 atomic regions from SNP 65593 to 66193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,116 DEBUG Processing 255/477 atomic regions from SNP 76251 to 76851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,171 DEBUG Processing 307/899 atomic regions from SNP 91834 to 92434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,222 DEBUG Processing 237/1020 atomic regions from SNP 70822 to 71422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,230 DEBUG Processing 86/646 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,240 DEBUG Processing 318/855 atomic regions from SNP 95177 to 95777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,348 DEBUG Processing 256/477 atomic regions from SNP 76551 to 77151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,362 DEBUG Processing 220/1130 atomic regions from SNP 65893 to 66493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,415 DEBUG Processing 308/899 atomic regions from SNP 92134 to 92734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,474 DEBUG Processing 87/646 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,485 DEBUG Processing 319/855 atomic regions from SNP 95477 to 96077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,499 DEBUG Processing 238/1020 atomic regions from SNP 71122 to 71722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,579 DEBUG Processing 257/477 atomic regions from SNP 76851 to 77451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,634 DEBUG Processing 221/1130 atomic regions from SNP 66193 to 66793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,664 DEBUG Processing 309/899 atomic regions from SNP 92434 to 93034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,729 DEBUG Processing 320/855 atomic regions from SNP 95777 to 96377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,730 DEBUG Processing 88/646 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,777 DEBUG Processing 239/1020 atomic regions from SNP 71422 to 72022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,811 DEBUG Processing 258/477 atomic regions from SNP 77151 to 77751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,906 DEBUG Processing 222/1130 atomic regions from SNP 66493 to 67093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,918 DEBUG Processing 310/899 atomic regions from SNP 92734 to 93334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,976 DEBUG Processing 321/855 atomic regions from SNP 96077 to 96677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,988 DEBUG Processing 89/646 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,044 DEBUG Processing 259/477 atomic regions from SNP 77451 to 78051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,056 DEBUG Processing 240/1020 atomic regions from SNP 71722 to 72322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,178 DEBUG Processing 223/1130 atomic regions from SNP 66793 to 67393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,190 DEBUG Processing 311/899 atomic regions from SNP 93034 to 93634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,228 DEBUG Processing 322/855 atomic regions from SNP 96377 to 96977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,271 DEBUG Processing 90/646 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,277 DEBUG Processing 260/477 atomic regions from SNP 77751 to 78351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,340 DEBUG Processing 241/1020 atomic regions from SNP 72022 to 72622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,440 DEBUG Processing 312/899 atomic regions from SNP 93334 to 93934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,451 DEBUG Processing 224/1130 atomic regions from SNP 67093 to 67693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,474 DEBUG Processing 323/855 atomic regions from SNP 96677 to 97277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,512 DEBUG Processing 261/477 atomic regions from SNP 78051 to 78651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,544 DEBUG Processing 91/646 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,622 DEBUG Processing 242/1020 atomic regions from SNP 72322 to 72922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,689 DEBUG Processing 313/899 atomic regions from SNP 93634 to 94234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,724 DEBUG Processing 324/855 atomic regions from SNP 96977 to 97577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,726 DEBUG Processing 225/1130 atomic regions from SNP 67393 to 67993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,749 DEBUG Processing 262/477 atomic regions from SNP 78351 to 78951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,802 DEBUG Processing 92/646 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,914 DEBUG Processing 243/1020 atomic regions from SNP 72622 to 73222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,941 DEBUG Processing 314/899 atomic regions from SNP 93934 to 94534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,977 DEBUG Processing 325/855 atomic regions from SNP 97277 to 97877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,992 DEBUG Processing 263/477 atomic regions from SNP 78651 to 79251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,008 DEBUG Processing 226/1130 atomic regions from SNP 67693 to 68293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,057 DEBUG Processing 93/646 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,191 DEBUG Processing 315/899 atomic regions from SNP 94234 to 94834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,193 DEBUG Processing 244/1020 atomic regions from SNP 72922 to 73522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,226 DEBUG Processing 326/855 atomic regions from SNP 97577 to 98177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,233 DEBUG Processing 264/477 atomic regions from SNP 78951 to 79551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,290 DEBUG Processing 227/1130 atomic regions from SNP 67993 to 68593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,303 DEBUG Processing 94/646 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,436 DEBUG Processing 316/899 atomic regions from SNP 94534 to 95134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,465 DEBUG Processing 245/1020 atomic regions from SNP 73222 to 73822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,466 DEBUG Processing 265/477 atomic regions from SNP 79251 to 79851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,468 DEBUG Processing 327/855 atomic regions from SNP 97877 to 98477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,546 DEBUG Processing 95/646 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,561 DEBUG Processing 228/1130 atomic regions from SNP 68293 to 68893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,683 DEBUG Processing 317/899 atomic regions from SNP 94834 to 95434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,699 DEBUG Processing 266/477 atomic regions from SNP 79551 to 80151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,713 DEBUG Processing 328/855 atomic regions from SNP 98177 to 98777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,737 DEBUG Processing 246/1020 atomic regions from SNP 73522 to 74122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,791 DEBUG Processing 96/646 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,825 DEBUG Processing 229/1130 atomic regions from SNP 68593 to 69193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,938 DEBUG Processing 318/899 atomic regions from SNP 95134 to 95734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,939 DEBUG Processing 267/477 atomic regions from SNP 79851 to 80451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,962 DEBUG Processing 329/855 atomic regions from SNP 98477 to 99077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,017 DEBUG Processing 247/1020 atomic regions from SNP 73822 to 74422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,070 DEBUG Processing 97/646 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,098 DEBUG Processing 230/1130 atomic regions from SNP 68893 to 69493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,186 DEBUG Processing 268/477 atomic regions from SNP 80151 to 80751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,198 DEBUG Processing 319/899 atomic regions from SNP 95434 to 96034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,217 DEBUG Processing 330/855 atomic regions from SNP 98777 to 99377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,296 DEBUG Processing 248/1020 atomic regions from SNP 74122 to 74722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,350 DEBUG Processing 98/646 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,364 DEBUG Processing 231/1130 atomic regions from SNP 69193 to 69793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,423 DEBUG Processing 269/477 atomic regions from SNP 80451 to 81051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,451 DEBUG Processing 320/899 atomic regions from SNP 95734 to 96334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,459 DEBUG Processing 331/855 atomic regions from SNP 99077 to 99677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,562 DEBUG Processing 249/1020 atomic regions from SNP 74422 to 75022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,628 DEBUG Processing 99/646 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,650 DEBUG Processing 232/1130 atomic regions from SNP 69493 to 70093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,662 DEBUG Processing 270/477 atomic regions from SNP 80751 to 81351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,703 DEBUG Processing 321/899 atomic regions from SNP 96034 to 96634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,704 DEBUG Processing 332/855 atomic regions from SNP 99377 to 99977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,839 DEBUG Processing 250/1020 atomic regions from SNP 74722 to 75322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,900 DEBUG Processing 100/646 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,911 DEBUG Processing 271/477 atomic regions from SNP 81051 to 81651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,931 DEBUG Processing 233/1130 atomic regions from SNP 69793 to 70393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,954 DEBUG Processing 333/855 atomic regions from SNP 99677 to 100277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,958 DEBUG Processing 322/899 atomic regions from SNP 96334 to 96934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,117 DEBUG Processing 251/1020 atomic regions from SNP 75022 to 75622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,149 DEBUG Processing 272/477 atomic regions from SNP 81351 to 81951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,181 DEBUG Processing 101/646 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,208 DEBUG Processing 334/855 atomic regions from SNP 99977 to 100577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,209 DEBUG Processing 234/1130 atomic regions from SNP 70093 to 70693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,219 DEBUG Processing 323/899 atomic regions from SNP 96634 to 97234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,380 DEBUG Processing 252/1020 atomic regions from SNP 75322 to 75922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,380 DEBUG Processing 273/477 atomic regions from SNP 81651 to 82251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,461 DEBUG Processing 335/855 atomic regions from SNP 100277 to 100877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,464 DEBUG Processing 102/646 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,476 DEBUG Processing 324/899 atomic regions from SNP 96934 to 97534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,490 DEBUG Processing 235/1130 atomic regions from SNP 70393 to 70993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,604 DEBUG Processing 274/477 atomic regions from SNP 81951 to 82551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,642 DEBUG Processing 253/1020 atomic regions from SNP 75622 to 76222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,706 DEBUG Processing 336/855 atomic regions from SNP 100577 to 101177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,731 DEBUG Processing 325/899 atomic regions from SNP 97234 to 97834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,736 DEBUG Processing 103/646 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,770 DEBUG Processing 236/1130 atomic regions from SNP 70693 to 71293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,825 DEBUG Processing 275/477 atomic regions from SNP 82251 to 82851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,906 DEBUG Processing 254/1020 atomic regions from SNP 75922 to 76522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,946 DEBUG Processing 337/855 atomic regions from SNP 100877 to 101477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,983 DEBUG Processing 326/899 atomic regions from SNP 97534 to 98134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,990 DEBUG Processing 104/646 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,049 DEBUG Processing 237/1130 atomic regions from SNP 70993 to 71593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,054 DEBUG Processing 276/477 atomic regions from SNP 82551 to 83151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,171 DEBUG Processing 255/1020 atomic regions from SNP 76222 to 76822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,182 DEBUG Processing 338/855 atomic regions from SNP 101177 to 101777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,233 DEBUG Processing 327/899 atomic regions from SNP 97834 to 98434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,245 DEBUG Processing 105/646 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,290 DEBUG Processing 277/477 atomic regions from SNP 82851 to 83451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,347 DEBUG Processing 238/1130 atomic regions from SNP 71293 to 71893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,417 DEBUG Processing 339/855 atomic regions from SNP 101477 to 102077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,443 DEBUG Processing 256/1020 atomic regions from SNP 76522 to 77122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,478 DEBUG Processing 328/899 atomic regions from SNP 98134 to 98734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,492 DEBUG Processing 106/646 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,521 DEBUG Processing 278/477 atomic regions from SNP 83151 to 83751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,643 DEBUG Processing 239/1130 atomic regions from SNP 71593 to 72193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,662 DEBUG Processing 340/855 atomic regions from SNP 101777 to 102377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,722 DEBUG Processing 329/899 atomic regions from SNP 98434 to 99034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,726 DEBUG Processing 257/1020 atomic regions from SNP 76822 to 77422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,747 DEBUG Processing 107/646 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,748 DEBUG Processing 279/477 atomic regions from SNP 83451 to 84051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,906 DEBUG Processing 341/855 atomic regions from SNP 102077 to 102677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,916 DEBUG Processing 240/1130 atomic regions from SNP 71893 to 72493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,968 DEBUG Processing 330/899 atomic regions from SNP 98734 to 99334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,977 DEBUG Processing 280/477 atomic regions from SNP 83751 to 84351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,008 DEBUG Processing 258/1020 atomic regions from SNP 77122 to 77722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,021 DEBUG Processing 108/646 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,148 DEBUG Processing 342/855 atomic regions from SNP 102377 to 102977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,195 DEBUG Processing 241/1130 atomic regions from SNP 72193 to 72793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,220 DEBUG Processing 281/477 atomic regions from SNP 84051 to 84651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,224 DEBUG Processing 331/899 atomic regions from SNP 99034 to 99634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,285 DEBUG Processing 109/646 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,288 DEBUG Processing 259/1020 atomic regions from SNP 77422 to 78022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,384 DEBUG Processing 343/855 atomic regions from SNP 102677 to 103277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,468 DEBUG Processing 282/477 atomic regions from SNP 84351 to 84951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,480 DEBUG Processing 242/1130 atomic regions from SNP 72493 to 73093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,485 DEBUG Processing 332/899 atomic regions from SNP 99334 to 99934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,531 DEBUG Processing 110/646 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,565 DEBUG Processing 260/1020 atomic regions from SNP 77722 to 78322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,611 DEBUG Processing 344/855 atomic regions from SNP 102977 to 103577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,712 DEBUG Processing 283/477 atomic regions from SNP 84651 to 85251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,743 DEBUG Processing 333/899 atomic regions from SNP 99634 to 100234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,762 DEBUG Processing 243/1130 atomic regions from SNP 72793 to 73393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,779 DEBUG Processing 111/646 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,840 DEBUG Processing 261/1020 atomic regions from SNP 78022 to 78622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,842 DEBUG Processing 345/855 atomic regions from SNP 103277 to 103877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,949 DEBUG Processing 284/477 atomic regions from SNP 84951 to 85551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,999 DEBUG Processing 334/899 atomic regions from SNP 99934 to 100534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,036 DEBUG Processing 112/646 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,045 DEBUG Processing 244/1130 atomic regions from SNP 73093 to 73693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,082 DEBUG Processing 346/855 atomic regions from SNP 103577 to 104177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,114 DEBUG Processing 262/1020 atomic regions from SNP 78322 to 78922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,174 DEBUG Processing 285/477 atomic regions from SNP 85251 to 85851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,247 DEBUG Processing 335/899 atomic regions from SNP 100234 to 100834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,290 DEBUG Processing 113/646 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,329 DEBUG Processing 245/1130 atomic regions from SNP 73393 to 73993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,331 DEBUG Processing 347/855 atomic regions from SNP 103877 to 104477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,390 DEBUG Processing 263/1020 atomic regions from SNP 78622 to 79222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,398 DEBUG Processing 286/477 atomic regions from SNP 85551 to 86151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,487 DEBUG Processing 336/899 atomic regions from SNP 100534 to 101134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,547 DEBUG Processing 114/646 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,590 DEBUG Processing 348/855 atomic regions from SNP 104177 to 104777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,618 DEBUG Processing 246/1130 atomic regions from SNP 73693 to 74293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,638 DEBUG Processing 287/477 atomic regions from SNP 85851 to 86451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,671 DEBUG Processing 264/1020 atomic regions from SNP 78922 to 79522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,733 DEBUG Processing 337/899 atomic regions from SNP 100834 to 101434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,795 DEBUG Processing 115/646 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,842 DEBUG Processing 349/855 atomic regions from SNP 104477 to 105077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,885 DEBUG Processing 288/477 atomic regions from SNP 86151 to 86751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,911 DEBUG Processing 247/1130 atomic regions from SNP 73993 to 74593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,954 DEBUG Processing 265/1020 atomic regions from SNP 79222 to 79822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,973 DEBUG Processing 338/899 atomic regions from SNP 101134 to 101734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,033 DEBUG Processing 116/646 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,083 DEBUG Processing 350/855 atomic regions from SNP 104777 to 105377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,130 DEBUG Processing 289/477 atomic regions from SNP 86451 to 87051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,199 DEBUG Processing 248/1130 atomic regions from SNP 74293 to 74893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,219 DEBUG Processing 339/899 atomic regions from SNP 101434 to 102034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,230 DEBUG Processing 266/1020 atomic regions from SNP 79522 to 80122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,266 DEBUG Processing 117/646 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,323 DEBUG Processing 351/855 atomic regions from SNP 105077 to 105677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,365 DEBUG Processing 290/477 atomic regions from SNP 86751 to 87351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,475 DEBUG Processing 340/899 atomic regions from SNP 101734 to 102334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,480 DEBUG Processing 249/1130 atomic regions from SNP 74593 to 75193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,507 DEBUG Processing 267/1020 atomic regions from SNP 79822 to 80422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,508 DEBUG Processing 118/646 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,576 DEBUG Processing 352/855 atomic regions from SNP 105377 to 105977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,593 DEBUG Processing 291/477 atomic regions from SNP 87051 to 87651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,726 DEBUG Processing 341/899 atomic regions from SNP 102034 to 102634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,758 DEBUG Processing 119/646 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,759 DEBUG Processing 250/1130 atomic regions from SNP 74893 to 75493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,782 DEBUG Processing 268/1020 atomic regions from SNP 80122 to 80722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,824 DEBUG Processing 292/477 atomic regions from SNP 87351 to 87951 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,841 DEBUG Processing 353/855 atomic regions from SNP 105677 to 106277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,978 DEBUG Processing 342/899 atomic regions from SNP 102334 to 102934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,006 DEBUG Processing 120/646 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,037 DEBUG Processing 251/1130 atomic regions from SNP 75193 to 75793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,058 DEBUG Processing 269/1020 atomic regions from SNP 80422 to 81022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,065 DEBUG Processing 293/477 atomic regions from SNP 87651 to 88251 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,108 DEBUG Processing 354/855 atomic regions from SNP 105977 to 106577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,219 DEBUG Processing 343/899 atomic regions from SNP 102634 to 103234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,246 DEBUG Processing 121/646 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,312 DEBUG Processing 294/477 atomic regions from SNP 87951 to 88551 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,318 DEBUG Processing 252/1130 atomic regions from SNP 75493 to 76093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,339 DEBUG Processing 270/1020 atomic regions from SNP 80722 to 81322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,368 DEBUG Processing 355/855 atomic regions from SNP 106277 to 106877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,455 DEBUG Processing 344/899 atomic regions from SNP 102934 to 103534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,482 DEBUG Processing 122/646 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,555 DEBUG Processing 295/477 atomic regions from SNP 88251 to 88851 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,604 DEBUG Processing 253/1130 atomic regions from SNP 75793 to 76393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,621 DEBUG Processing 356/855 atomic regions from SNP 106577 to 107177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,626 DEBUG Processing 271/1020 atomic regions from SNP 81022 to 81622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,701 DEBUG Processing 345/899 atomic regions from SNP 103234 to 103834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,721 DEBUG Processing 123/646 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,789 DEBUG Processing 296/477 atomic regions from SNP 88551 to 89151 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,874 DEBUG Processing 357/855 atomic regions from SNP 106877 to 107477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,889 DEBUG Processing 254/1130 atomic regions from SNP 76093 to 76693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,913 DEBUG Processing 272/1020 atomic regions from SNP 81322 to 81922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,954 DEBUG Processing 346/899 atomic regions from SNP 103534 to 104134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,970 DEBUG Processing 124/646 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,022 DEBUG Processing 297/477 atomic regions from SNP 88851 to 89451 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,122 DEBUG Processing 358/855 atomic regions from SNP 107177 to 107777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,170 DEBUG Processing 255/1130 atomic regions from SNP 76393 to 76993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,193 DEBUG Processing 273/1020 atomic regions from SNP 81622 to 82222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,211 DEBUG Processing 347/899 atomic regions from SNP 103834 to 104434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,216 DEBUG Processing 125/646 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,247 DEBUG Processing 298/477 atomic regions from SNP 89151 to 89751 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,359 DEBUG Processing 359/855 atomic regions from SNP 107477 to 108077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,450 DEBUG Processing 256/1130 atomic regions from SNP 76693 to 77293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,462 DEBUG Processing 348/899 atomic regions from SNP 104134 to 104734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,463 DEBUG Processing 126/646 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,469 DEBUG Processing 274/1020 atomic regions from SNP 81922 to 82522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,481 DEBUG Processing 299/477 atomic regions from SNP 89451 to 90051 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,595 DEBUG Processing 360/855 atomic regions from SNP 107777 to 108377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,709 DEBUG Processing 127/646 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,713 DEBUG Processing 349/899 atomic regions from SNP 104434 to 105034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,716 DEBUG Processing 300/477 atomic regions from SNP 89751 to 90351 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,731 DEBUG Processing 257/1130 atomic regions from SNP 76993 to 77593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,740 DEBUG Processing 275/1020 atomic regions from SNP 82222 to 82822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,834 DEBUG Processing 361/855 atomic regions from SNP 108077 to 108677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,954 DEBUG Processing 128/646 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,955 DEBUG Processing 301/477 atomic regions from SNP 90051 to 90651 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,967 DEBUG Processing 350/899 atomic regions from SNP 104734 to 105334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,010 DEBUG Processing 258/1130 atomic regions from SNP 77293 to 77893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,019 DEBUG Processing 276/1020 atomic regions from SNP 82522 to 83122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,081 DEBUG Processing 362/855 atomic regions from SNP 108377 to 108977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,193 DEBUG Processing 129/646 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,193 DEBUG Processing 302/477 atomic regions from SNP 90351 to 90951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,218 DEBUG Processing 351/899 atomic regions from SNP 105034 to 105634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,290 DEBUG Processing 259/1130 atomic regions from SNP 77593 to 78193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,293 DEBUG Processing 277/1020 atomic regions from SNP 82822 to 83422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,326 DEBUG Processing 363/855 atomic regions from SNP 108677 to 109277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,440 DEBUG Processing 303/477 atomic regions from SNP 90651 to 91251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,442 DEBUG Processing 130/646 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,481 DEBUG Processing 352/899 atomic regions from SNP 105334 to 105934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,570 DEBUG Processing 364/855 atomic regions from SNP 108977 to 109577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,575 DEBUG Processing 260/1130 atomic regions from SNP 77893 to 78493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,578 DEBUG Processing 278/1020 atomic regions from SNP 83122 to 83722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,681 DEBUG Processing 304/477 atomic regions from SNP 90951 to 91551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,684 DEBUG Processing 131/646 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,765 DEBUG Processing 353/899 atomic regions from SNP 105634 to 106234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,817 DEBUG Processing 365/855 atomic regions from SNP 109277 to 109877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,856 DEBUG Processing 261/1130 atomic regions from SNP 78193 to 78793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,857 DEBUG Processing 279/1020 atomic regions from SNP 83422 to 84022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,926 DEBUG Processing 132/646 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,937 DEBUG Processing 305/477 atomic regions from SNP 91251 to 91851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,038 DEBUG Processing 354/899 atomic regions from SNP 105934 to 106534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,067 DEBUG Processing 366/855 atomic regions from SNP 109577 to 110177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,139 DEBUG Processing 280/1020 atomic regions from SNP 83722 to 84322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,144 DEBUG Processing 262/1130 atomic regions from SNP 78493 to 79093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,167 DEBUG Processing 133/646 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,183 DEBUG Processing 306/477 atomic regions from SNP 91551 to 92151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,300 DEBUG Processing 355/899 atomic regions from SNP 106234 to 106834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,335 DEBUG Processing 367/855 atomic regions from SNP 109877 to 110477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,409 DEBUG Processing 307/477 atomic regions from SNP 91851 to 92451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,416 DEBUG Processing 134/646 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,423 DEBUG Processing 281/1020 atomic regions from SNP 84022 to 84622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,423 DEBUG Processing 263/1130 atomic regions from SNP 78793 to 79393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,560 DEBUG Processing 356/899 atomic regions from SNP 106534 to 107134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,611 DEBUG Processing 368/855 atomic regions from SNP 110177 to 110777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,654 DEBUG Processing 308/477 atomic regions from SNP 92151 to 92751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,674 DEBUG Processing 135/646 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,704 DEBUG Processing 264/1130 atomic regions from SNP 79093 to 79693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,705 DEBUG Processing 282/1020 atomic regions from SNP 84322 to 84922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,801 DEBUG Processing 357/899 atomic regions from SNP 106834 to 107434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,857 DEBUG Processing 369/855 atomic regions from SNP 110477 to 111077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,899 DEBUG Processing 309/477 atomic regions from SNP 92451 to 93051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,935 DEBUG Processing 136/646 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,982 DEBUG Processing 265/1130 atomic regions from SNP 79393 to 79993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,986 DEBUG Processing 283/1020 atomic regions from SNP 84622 to 85222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,042 DEBUG Processing 358/899 atomic regions from SNP 107134 to 107734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,099 DEBUG Processing 370/855 atomic regions from SNP 110777 to 111377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,142 DEBUG Processing 310/477 atomic regions from SNP 92751 to 93351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,194 DEBUG Processing 137/646 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,262 DEBUG Processing 266/1130 atomic regions from SNP 79693 to 80293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,267 DEBUG Processing 284/1020 atomic regions from SNP 84922 to 85522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,283 DEBUG Processing 359/899 atomic regions from SNP 107434 to 108034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,337 DEBUG Processing 371/855 atomic regions from SNP 111077 to 111677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,383 DEBUG Processing 311/477 atomic regions from SNP 93051 to 93651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,447 DEBUG Processing 138/646 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,532 DEBUG Processing 360/899 atomic regions from SNP 107734 to 108334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,540 DEBUG Processing 267/1130 atomic regions from SNP 79993 to 80593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,551 DEBUG Processing 285/1020 atomic regions from SNP 85222 to 85822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,588 DEBUG Processing 372/855 atomic regions from SNP 111377 to 111977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,623 DEBUG Processing 312/477 atomic regions from SNP 93351 to 93951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,692 DEBUG Processing 139/646 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,778 DEBUG Processing 361/899 atomic regions from SNP 108034 to 108634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,811 DEBUG Processing 268/1130 atomic regions from SNP 80293 to 80893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,825 DEBUG Processing 286/1020 atomic regions from SNP 85522 to 86122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,834 DEBUG Processing 373/855 atomic regions from SNP 111677 to 112277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,865 DEBUG Processing 313/477 atomic regions from SNP 93651 to 94251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,940 DEBUG Processing 140/646 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,033 DEBUG Processing 362/899 atomic regions from SNP 108334 to 108934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,082 DEBUG Processing 374/855 atomic regions from SNP 111977 to 112577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,084 DEBUG Processing 269/1130 atomic regions from SNP 80593 to 81193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,104 DEBUG Processing 287/1020 atomic regions from SNP 85822 to 86422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,110 DEBUG Processing 314/477 atomic regions from SNP 93951 to 94551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,192 DEBUG Processing 141/646 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,285 DEBUG Processing 363/899 atomic regions from SNP 108634 to 109234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,327 DEBUG Processing 375/855 atomic regions from SNP 112277 to 112877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,360 DEBUG Processing 270/1130 atomic regions from SNP 80893 to 81493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,364 DEBUG Processing 315/477 atomic regions from SNP 94251 to 94851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,382 DEBUG Processing 288/1020 atomic regions from SNP 86122 to 86722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,449 DEBUG Processing 142/646 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,530 DEBUG Processing 364/899 atomic regions from SNP 108934 to 109534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,570 DEBUG Processing 376/855 atomic regions from SNP 112577 to 113177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,628 DEBUG Processing 316/477 atomic regions from SNP 94551 to 95151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,640 DEBUG Processing 271/1130 atomic regions from SNP 81193 to 81793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,659 DEBUG Processing 289/1020 atomic regions from SNP 86422 to 87022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,709 DEBUG Processing 143/646 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,771 DEBUG Processing 365/899 atomic regions from SNP 109234 to 109834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,809 DEBUG Processing 377/855 atomic regions from SNP 112877 to 113477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,890 DEBUG Processing 317/477 atomic regions from SNP 94851 to 95451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,918 DEBUG Processing 272/1130 atomic regions from SNP 81493 to 82093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,936 DEBUG Processing 290/1020 atomic regions from SNP 86722 to 87322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,967 DEBUG Processing 144/646 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,016 DEBUG Processing 366/899 atomic regions from SNP 109534 to 110134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,052 DEBUG Processing 378/855 atomic regions from SNP 113177 to 113777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,159 DEBUG Processing 318/477 atomic regions from SNP 95151 to 95751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,196 DEBUG Processing 273/1130 atomic regions from SNP 81793 to 82393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,214 DEBUG Processing 291/1020 atomic regions from SNP 87022 to 87622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,221 DEBUG Processing 145/646 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,261 DEBUG Processing 367/899 atomic regions from SNP 109834 to 110434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,297 DEBUG Processing 379/855 atomic regions from SNP 113477 to 114077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,415 DEBUG Processing 319/477 atomic regions from SNP 95451 to 96051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,471 DEBUG Processing 274/1130 atomic regions from SNP 82093 to 82693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,475 DEBUG Processing 146/646 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,496 DEBUG Processing 292/1020 atomic regions from SNP 87322 to 87922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,505 DEBUG Processing 368/899 atomic regions from SNP 110134 to 110734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,543 DEBUG Processing 380/855 atomic regions from SNP 113777 to 114377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,670 DEBUG Processing 320/477 atomic regions from SNP 95751 to 96351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,730 DEBUG Processing 147/646 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,743 DEBUG Processing 275/1130 atomic regions from SNP 82393 to 82993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,749 DEBUG Processing 369/899 atomic regions from SNP 110434 to 111034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,781 DEBUG Processing 293/1020 atomic regions from SNP 87622 to 88222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,786 DEBUG Processing 381/855 atomic regions from SNP 114077 to 114677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,928 DEBUG Processing 321/477 atomic regions from SNP 96051 to 96651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,977 DEBUG Processing 148/646 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,997 DEBUG Processing 370/899 atomic regions from SNP 110734 to 111334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,016 DEBUG Processing 276/1130 atomic regions from SNP 82693 to 83293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,039 DEBUG Processing 382/855 atomic regions from SNP 114377 to 114977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,061 DEBUG Processing 294/1020 atomic regions from SNP 87922 to 88522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,179 DEBUG Processing 322/477 atomic regions from SNP 96351 to 96951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,216 DEBUG Processing 149/646 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,260 DEBUG Processing 371/899 atomic regions from SNP 111034 to 111634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,287 DEBUG Processing 383/855 atomic regions from SNP 114677 to 115277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,289 DEBUG Processing 277/1130 atomic regions from SNP 82993 to 83593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,336 DEBUG Processing 295/1020 atomic regions from SNP 88222 to 88822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,421 DEBUG Processing 323/477 atomic regions from SNP 96651 to 97251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,458 DEBUG Processing 150/646 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,517 DEBUG Processing 372/899 atomic regions from SNP 111334 to 111934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,527 DEBUG Processing 384/855 atomic regions from SNP 114977 to 115577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,560 DEBUG Processing 278/1130 atomic regions from SNP 83293 to 83893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,610 DEBUG Processing 296/1020 atomic regions from SNP 88522 to 89122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,667 DEBUG Processing 324/477 atomic regions from SNP 96951 to 97551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,704 DEBUG Processing 151/646 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,769 DEBUG Processing 385/855 atomic regions from SNP 115277 to 115877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,793 DEBUG Processing 373/899 atomic regions from SNP 111634 to 112234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,829 DEBUG Processing 279/1130 atomic regions from SNP 83593 to 84193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,880 DEBUG Processing 297/1020 atomic regions from SNP 88822 to 89422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,906 DEBUG Processing 325/477 atomic regions from SNP 97251 to 97851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,954 DEBUG Processing 152/646 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,019 DEBUG Processing 386/855 atomic regions from SNP 115577 to 116177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,057 DEBUG Processing 374/899 atomic regions from SNP 111934 to 112534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,107 DEBUG Processing 280/1130 atomic regions from SNP 83893 to 84493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,144 DEBUG Processing 326/477 atomic regions from SNP 97551 to 98151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,153 DEBUG Processing 298/1020 atomic regions from SNP 89122 to 89722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,205 DEBUG Processing 153/646 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,269 DEBUG Processing 387/855 atomic regions from SNP 115877 to 116477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,313 DEBUG Processing 375/899 atomic regions from SNP 112234 to 112834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,387 DEBUG Processing 281/1130 atomic regions from SNP 84193 to 84793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,414 DEBUG Processing 327/477 atomic regions from SNP 97851 to 98451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,426 DEBUG Processing 299/1020 atomic regions from SNP 89422 to 90022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,456 DEBUG Processing 154/646 atomic regions from SNP 46053 to 46653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,511 DEBUG Processing 388/855 atomic regions from SNP 116177 to 116777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,568 DEBUG Processing 376/899 atomic regions from SNP 112534 to 113134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,658 DEBUG Processing 328/477 atomic regions from SNP 98151 to 98751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,673 DEBUG Processing 282/1130 atomic regions from SNP 84493 to 85093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,705 DEBUG Processing 300/1020 atomic regions from SNP 89722 to 90322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,708 DEBUG Processing 155/646 atomic regions from SNP 46353 to 46953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,749 DEBUG Processing 389/855 atomic regions from SNP 116477 to 117077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,816 DEBUG Processing 377/899 atomic regions from SNP 112834 to 113434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,905 DEBUG Processing 329/477 atomic regions from SNP 98451 to 99051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,962 DEBUG Processing 156/646 atomic regions from SNP 46653 to 47253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,984 DEBUG Processing 283/1130 atomic regions from SNP 84793 to 85393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,986 DEBUG Processing 390/855 atomic regions from SNP 116777 to 117377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,987 DEBUG Processing 301/1020 atomic regions from SNP 90022 to 90622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,061 DEBUG Processing 378/899 atomic regions from SNP 113134 to 113734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,150 DEBUG Processing 330/477 atomic regions from SNP 98751 to 99351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,220 DEBUG Processing 157/646 atomic regions from SNP 46953 to 47553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,233 DEBUG Processing 391/855 atomic regions from SNP 117077 to 117677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,272 DEBUG Processing 302/1020 atomic regions from SNP 90322 to 90922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,282 DEBUG Processing 284/1130 atomic regions from SNP 85093 to 85693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,311 DEBUG Processing 379/899 atomic regions from SNP 113434 to 114034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,387 DEBUG Processing 331/477 atomic regions from SNP 99051 to 99651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,472 DEBUG Processing 158/646 atomic regions from SNP 47253 to 47853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,479 DEBUG Processing 392/855 atomic regions from SNP 117377 to 117977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,555 DEBUG Processing 303/1020 atomic regions from SNP 90622 to 91222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,568 DEBUG Processing 380/899 atomic regions from SNP 113734 to 114334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,577 DEBUG Processing 285/1130 atomic regions from SNP 85393 to 85993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,621 DEBUG Processing 332/477 atomic regions from SNP 99351 to 99951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,718 DEBUG Processing 159/646 atomic regions from SNP 47553 to 48153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,720 DEBUG Processing 393/855 atomic regions from SNP 117677 to 118277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,825 DEBUG Processing 381/899 atomic regions from SNP 114034 to 114634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,836 DEBUG Processing 304/1020 atomic regions from SNP 90922 to 91522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,863 DEBUG Processing 333/477 atomic regions from SNP 99651 to 100251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,876 DEBUG Processing 286/1130 atomic regions from SNP 85693 to 86293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,956 DEBUG Processing 394/855 atomic regions from SNP 117977 to 118577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,959 DEBUG Processing 160/646 atomic regions from SNP 47853 to 48453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,080 DEBUG Processing 382/899 atomic regions from SNP 114334 to 114934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,105 DEBUG Processing 334/477 atomic regions from SNP 99951 to 100551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,116 DEBUG Processing 305/1020 atomic regions from SNP 91222 to 91822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,165 DEBUG Processing 287/1130 atomic regions from SNP 85993 to 86593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,198 DEBUG Processing 395/855 atomic regions from SNP 118277 to 118877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,203 DEBUG Processing 161/646 atomic regions from SNP 48153 to 48753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,332 DEBUG Processing 383/899 atomic regions from SNP 114634 to 115234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,346 DEBUG Processing 335/477 atomic regions from SNP 100251 to 100851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,393 DEBUG Processing 306/1020 atomic regions from SNP 91522 to 92122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,443 DEBUG Processing 288/1130 atomic regions from SNP 86293 to 86893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,447 DEBUG Processing 396/855 atomic regions from SNP 118577 to 119177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,449 DEBUG Processing 162/646 atomic regions from SNP 48453 to 49053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,586 DEBUG Processing 336/477 atomic regions from SNP 100551 to 101151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,590 DEBUG Processing 384/899 atomic regions from SNP 114934 to 115534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,672 DEBUG Processing 307/1020 atomic regions from SNP 91822 to 92422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,686 DEBUG Processing 397/855 atomic regions from SNP 118877 to 119477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,693 DEBUG Processing 163/646 atomic regions from SNP 48753 to 49353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,719 DEBUG Processing 289/1130 atomic regions from SNP 86593 to 87193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,830 DEBUG Processing 337/477 atomic regions from SNP 100851 to 101451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,845 DEBUG Processing 385/899 atomic regions from SNP 115234 to 115834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,937 DEBUG Processing 164/646 atomic regions from SNP 49053 to 49653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,945 DEBUG Processing 308/1020 atomic regions from SNP 92122 to 92722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,949 DEBUG Processing 398/855 atomic regions from SNP 119177 to 119777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,998 DEBUG Processing 290/1130 atomic regions from SNP 86893 to 87493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,071 DEBUG Processing 338/477 atomic regions from SNP 101151 to 101751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,098 DEBUG Processing 386/899 atomic regions from SNP 115534 to 116134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,184 DEBUG Processing 165/646 atomic regions from SNP 49353 to 49953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,206 DEBUG Processing 399/855 atomic regions from SNP 119477 to 120077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,218 DEBUG Processing 309/1020 atomic regions from SNP 92422 to 93022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,279 DEBUG Processing 291/1130 atomic regions from SNP 87193 to 87793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,309 DEBUG Processing 339/477 atomic regions from SNP 101451 to 102051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,350 DEBUG Processing 387/899 atomic regions from SNP 115834 to 116434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,435 DEBUG Processing 166/646 atomic regions from SNP 49653 to 50253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,458 DEBUG Processing 400/855 atomic regions from SNP 119777 to 120377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,489 DEBUG Processing 310/1020 atomic regions from SNP 92722 to 93322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,554 DEBUG Processing 340/477 atomic regions from SNP 101751 to 102351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,564 DEBUG Processing 292/1130 atomic regions from SNP 87493 to 88093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,602 DEBUG Processing 388/899 atomic regions from SNP 116134 to 116734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,683 DEBUG Processing 167/646 atomic regions from SNP 49953 to 50553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,693 DEBUG Processing 401/855 atomic regions from SNP 120077 to 120677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,760 DEBUG Processing 311/1020 atomic regions from SNP 93022 to 93622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,802 DEBUG Processing 341/477 atomic regions from SNP 102051 to 102651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,855 DEBUG Processing 293/1130 atomic regions from SNP 87793 to 88393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,863 DEBUG Processing 389/899 atomic regions from SNP 116434 to 117034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,926 DEBUG Processing 402/855 atomic regions from SNP 120377 to 120977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,932 DEBUG Processing 168/646 atomic regions from SNP 50253 to 50853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,032 DEBUG Processing 312/1020 atomic regions from SNP 93322 to 93922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,050 DEBUG Processing 342/477 atomic regions from SNP 102351 to 102951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,127 DEBUG Processing 390/899 atomic regions from SNP 116734 to 117334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,152 DEBUG Processing 294/1130 atomic regions from SNP 88093 to 88693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,196 DEBUG Processing 169/646 atomic regions from SNP 50553 to 51153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,196 DEBUG Processing 403/855 atomic regions from SNP 120677 to 121277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,291 DEBUG Processing 343/477 atomic regions from SNP 102651 to 103251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,309 DEBUG Processing 313/1020 atomic regions from SNP 93622 to 94222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,386 DEBUG Processing 391/899 atomic regions from SNP 117034 to 117634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,437 DEBUG Processing 295/1130 atomic regions from SNP 88393 to 88993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,444 DEBUG Processing 170/646 atomic regions from SNP 50853 to 51453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,448 DEBUG Processing 404/855 atomic regions from SNP 120977 to 121577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,542 DEBUG Processing 344/477 atomic regions from SNP 102951 to 103551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,582 DEBUG Processing 314/1020 atomic regions from SNP 93922 to 94522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,642 DEBUG Processing 392/899 atomic regions from SNP 117334 to 117934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,692 DEBUG Processing 405/855 atomic regions from SNP 121277 to 121877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,693 DEBUG Processing 171/646 atomic regions from SNP 51153 to 51753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,717 DEBUG Processing 296/1130 atomic regions from SNP 88693 to 89293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,802 DEBUG Processing 345/477 atomic regions from SNP 103251 to 103851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,853 DEBUG Processing 315/1020 atomic regions from SNP 94222 to 94822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,894 DEBUG Processing 393/899 atomic regions from SNP 117634 to 118234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,935 DEBUG Processing 406/855 atomic regions from SNP 121577 to 122177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,941 DEBUG Processing 172/646 atomic regions from SNP 51453 to 52053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,994 DEBUG Processing 297/1130 atomic regions from SNP 88993 to 89593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,067 DEBUG Processing 346/477 atomic regions from SNP 103551 to 104151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,128 DEBUG Processing 316/1020 atomic regions from SNP 94522 to 95122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,143 DEBUG Processing 394/899 atomic regions from SNP 117934 to 118534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,180 DEBUG Processing 407/855 atomic regions from SNP 121877 to 122477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,191 DEBUG Processing 173/646 atomic regions from SNP 51753 to 52353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,273 DEBUG Processing 298/1130 atomic regions from SNP 89293 to 89893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,345 DEBUG Processing 347/477 atomic regions from SNP 103851 to 104451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,398 DEBUG Processing 395/899 atomic regions from SNP 118234 to 118834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,417 DEBUG Processing 317/1020 atomic regions from SNP 94822 to 95422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,429 DEBUG Processing 408/855 atomic regions from SNP 122177 to 122777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,454 DEBUG Processing 174/646 atomic regions from SNP 52053 to 52653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,563 DEBUG Processing 299/1130 atomic regions from SNP 89593 to 90193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,606 DEBUG Processing 348/477 atomic regions from SNP 104151 to 104751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,649 DEBUG Processing 396/899 atomic regions from SNP 118534 to 119134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,670 DEBUG Processing 409/855 atomic regions from SNP 122477 to 123077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,692 DEBUG Processing 318/1020 atomic regions from SNP 95122 to 95722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,704 DEBUG Processing 175/646 atomic regions from SNP 52353 to 52953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,847 DEBUG Processing 349/477 atomic regions from SNP 104451 to 105051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,865 DEBUG Processing 300/1130 atomic regions from SNP 89893 to 90493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,902 DEBUG Processing 397/899 atomic regions from SNP 118834 to 119434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,916 DEBUG Processing 410/855 atomic regions from SNP 122777 to 123377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,955 DEBUG Processing 176/646 atomic regions from SNP 52653 to 53253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,968 DEBUG Processing 319/1020 atomic regions from SNP 95422 to 96022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,088 DEBUG Processing 350/477 atomic regions from SNP 104751 to 105351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,160 DEBUG Processing 398/899 atomic regions from SNP 119134 to 119734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,165 DEBUG Processing 411/855 atomic regions from SNP 123077 to 123677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,178 DEBUG Processing 301/1130 atomic regions from SNP 90193 to 90793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,203 DEBUG Processing 177/646 atomic regions from SNP 52953 to 53553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,264 DEBUG Processing 320/1020 atomic regions from SNP 95722 to 96322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,322 DEBUG Processing 351/477 atomic regions from SNP 105051 to 105651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,419 DEBUG Processing 399/899 atomic regions from SNP 119434 to 120034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,421 DEBUG Processing 412/855 atomic regions from SNP 123377 to 123977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,455 DEBUG Processing 178/646 atomic regions from SNP 53253 to 53853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,462 DEBUG Processing 302/1130 atomic regions from SNP 90493 to 91093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,541 DEBUG Processing 321/1020 atomic regions from SNP 96022 to 96622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,553 DEBUG Processing 352/477 atomic regions from SNP 105351 to 105951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,671 DEBUG Processing 413/855 atomic regions from SNP 123677 to 124277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,678 DEBUG Processing 400/899 atomic regions from SNP 119734 to 120334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,707 DEBUG Processing 179/646 atomic regions from SNP 53553 to 54153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,744 DEBUG Processing 303/1130 atomic regions from SNP 90793 to 91393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,791 DEBUG Processing 353/477 atomic regions from SNP 105651 to 106251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,812 DEBUG Processing 322/1020 atomic regions from SNP 96322 to 96922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,916 DEBUG Processing 414/855 atomic regions from SNP 123977 to 124577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,933 DEBUG Processing 401/899 atomic regions from SNP 120034 to 120634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,963 DEBUG Processing 180/646 atomic regions from SNP 53853 to 54453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,027 DEBUG Processing 304/1130 atomic regions from SNP 91093 to 91693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,042 DEBUG Processing 354/477 atomic regions from SNP 105951 to 106551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,086 DEBUG Processing 323/1020 atomic regions from SNP 96622 to 97222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,157 DEBUG Processing 415/855 atomic regions from SNP 124277 to 124877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,182 DEBUG Processing 402/899 atomic regions from SNP 120334 to 120934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,218 DEBUG Processing 181/646 atomic regions from SNP 54153 to 54753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,295 DEBUG Processing 355/477 atomic regions from SNP 106251 to 106851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,308 DEBUG Processing 305/1130 atomic regions from SNP 91393 to 91993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,364 DEBUG Processing 324/1020 atomic regions from SNP 96922 to 97522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,404 DEBUG Processing 416/855 atomic regions from SNP 124577 to 125177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,437 DEBUG Processing 403/899 atomic regions from SNP 120634 to 121234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,476 DEBUG Processing 182/646 atomic regions from SNP 54453 to 55053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,549 DEBUG Processing 356/477 atomic regions from SNP 106551 to 107151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,593 DEBUG Processing 306/1130 atomic regions from SNP 91693 to 92293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,640 DEBUG Processing 325/1020 atomic regions from SNP 97222 to 97822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,648 DEBUG Processing 417/855 atomic regions from SNP 124877 to 125477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,687 DEBUG Processing 404/899 atomic regions from SNP 120934 to 121534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,729 DEBUG Processing 183/646 atomic regions from SNP 54753 to 55353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,809 DEBUG Processing 357/477 atomic regions from SNP 106851 to 107451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,876 DEBUG Processing 307/1130 atomic regions from SNP 91993 to 92593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,900 DEBUG Processing 418/855 atomic regions from SNP 125177 to 125777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,916 DEBUG Processing 326/1020 atomic regions from SNP 97522 to 98122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,943 DEBUG Processing 405/899 atomic regions from SNP 121234 to 121834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,983 DEBUG Processing 184/646 atomic regions from SNP 55053 to 55653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,070 DEBUG Processing 358/477 atomic regions from SNP 107151 to 107751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,146 DEBUG Processing 419/855 atomic regions from SNP 125477 to 126077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,150 DEBUG Processing 308/1130 atomic regions from SNP 92293 to 92893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,183 DEBUG Processing 327/1020 atomic regions from SNP 97822 to 98422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,201 DEBUG Processing 406/899 atomic regions from SNP 121534 to 122134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,232 DEBUG Processing 185/646 atomic regions from SNP 55353 to 55953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,320 DEBUG Processing 359/477 atomic regions from SNP 107451 to 108051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,389 DEBUG Processing 420/855 atomic regions from SNP 125777 to 126377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,425 DEBUG Processing 309/1130 atomic regions from SNP 92593 to 93193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,457 DEBUG Processing 407/899 atomic regions from SNP 121834 to 122434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,459 DEBUG Processing 328/1020 atomic regions from SNP 98122 to 98722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,487 DEBUG Processing 186/646 atomic regions from SNP 55653 to 56253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,568 DEBUG Processing 360/477 atomic regions from SNP 107751 to 108351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,652 DEBUG Processing 421/855 atomic regions from SNP 126077 to 126677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,703 DEBUG Processing 310/1130 atomic regions from SNP 92893 to 93493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,710 DEBUG Processing 408/899 atomic regions from SNP 122134 to 122734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,735 DEBUG Processing 329/1020 atomic regions from SNP 98422 to 99022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,741 DEBUG Processing 187/646 atomic regions from SNP 55953 to 56553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,820 DEBUG Processing 361/477 atomic regions from SNP 108051 to 108651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,914 DEBUG Processing 422/855 atomic regions from SNP 126377 to 126977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,961 DEBUG Processing 409/899 atomic regions from SNP 122434 to 123034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,981 DEBUG Processing 311/1130 atomic regions from SNP 93193 to 93793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,994 DEBUG Processing 188/646 atomic regions from SNP 56253 to 56853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,015 DEBUG Processing 330/1020 atomic regions from SNP 98722 to 99322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,077 DEBUG Processing 362/477 atomic regions from SNP 108351 to 108951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,173 DEBUG Processing 423/855 atomic regions from SNP 126677 to 127277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,214 DEBUG Processing 410/899 atomic regions from SNP 122734 to 123334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,247 DEBUG Processing 189/646 atomic regions from SNP 56553 to 57153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,262 DEBUG Processing 312/1130 atomic regions from SNP 93493 to 94093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,297 DEBUG Processing 331/1020 atomic regions from SNP 99022 to 99622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,343 DEBUG Processing 363/477 atomic regions from SNP 108651 to 109251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,417 DEBUG Processing 424/855 atomic regions from SNP 126977 to 127577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,463 DEBUG Processing 411/899 atomic regions from SNP 123034 to 123634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,504 DEBUG Processing 190/646 atomic regions from SNP 56853 to 57453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,538 DEBUG Processing 313/1130 atomic regions from SNP 93793 to 94393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,576 DEBUG Processing 332/1020 atomic regions from SNP 99322 to 99922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,600 DEBUG Processing 364/477 atomic regions from SNP 108951 to 109551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,656 DEBUG Processing 425/855 atomic regions from SNP 127277 to 127877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,714 DEBUG Processing 412/899 atomic regions from SNP 123334 to 123934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,754 DEBUG Processing 191/646 atomic regions from SNP 57153 to 57753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,817 DEBUG Processing 314/1130 atomic regions from SNP 94093 to 94693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,840 DEBUG Processing 365/477 atomic regions from SNP 109251 to 109851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,855 DEBUG Processing 333/1020 atomic regions from SNP 99622 to 100222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,895 DEBUG Processing 426/855 atomic regions from SNP 127577 to 128177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,960 DEBUG Processing 413/899 atomic regions from SNP 123634 to 124234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,008 DEBUG Processing 192/646 atomic regions from SNP 57453 to 58053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,087 DEBUG Processing 366/477 atomic regions from SNP 109551 to 110151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,095 DEBUG Processing 315/1130 atomic regions from SNP 94393 to 94993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,130 DEBUG Processing 334/1020 atomic regions from SNP 99922 to 100522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,138 DEBUG Processing 427/855 atomic regions from SNP 127877 to 128477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,199 DEBUG Processing 414/899 atomic regions from SNP 123934 to 124534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,257 DEBUG Processing 193/646 atomic regions from SNP 57753 to 58353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,338 DEBUG Processing 367/477 atomic regions from SNP 109851 to 110451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,375 DEBUG Processing 316/1130 atomic regions from SNP 94693 to 95293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,383 DEBUG Processing 428/855 atomic regions from SNP 128177 to 128777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,405 DEBUG Processing 335/1020 atomic regions from SNP 100222 to 100822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,441 DEBUG Processing 415/899 atomic regions from SNP 124234 to 124834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,509 DEBUG Processing 194/646 atomic regions from SNP 58053 to 58653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,581 DEBUG Processing 368/477 atomic regions from SNP 110151 to 110751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,631 DEBUG Processing 429/855 atomic regions from SNP 128477 to 129077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,657 DEBUG Processing 317/1130 atomic regions from SNP 94993 to 95593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,678 DEBUG Processing 336/1020 atomic regions from SNP 100522 to 101122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,686 DEBUG Processing 416/899 atomic regions from SNP 124534 to 125134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,761 DEBUG Processing 195/646 atomic regions from SNP 58353 to 58953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,817 DEBUG Processing 369/477 atomic regions from SNP 110451 to 111051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,877 DEBUG Processing 430/855 atomic regions from SNP 128777 to 129377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,935 DEBUG Processing 417/899 atomic regions from SNP 124834 to 125434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,935 DEBUG Processing 318/1130 atomic regions from SNP 95293 to 95893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,951 DEBUG Processing 337/1020 atomic regions from SNP 100822 to 101422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,009 DEBUG Processing 196/646 atomic regions from SNP 58653 to 59253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,091 DEBUG Processing 370/477 atomic regions from SNP 110751 to 111351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,121 DEBUG Processing 431/855 atomic regions from SNP 129077 to 129677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,187 DEBUG Processing 418/899 atomic regions from SNP 125134 to 125734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,212 DEBUG Processing 319/1130 atomic regions from SNP 95593 to 96193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,236 DEBUG Processing 338/1020 atomic regions from SNP 101122 to 101722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,254 DEBUG Processing 197/646 atomic regions from SNP 58953 to 59553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,364 DEBUG Processing 432/855 atomic regions from SNP 129377 to 129977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,367 DEBUG Processing 371/477 atomic regions from SNP 111051 to 111651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,437 DEBUG Processing 419/899 atomic regions from SNP 125434 to 126034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,496 DEBUG Processing 198/646 atomic regions from SNP 59253 to 59853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,507 DEBUG Processing 320/1130 atomic regions from SNP 95893 to 96493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,508 DEBUG Processing 339/1020 atomic regions from SNP 101422 to 102022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,609 DEBUG Processing 433/855 atomic regions from SNP 129677 to 130277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,615 DEBUG Processing 372/477 atomic regions from SNP 111351 to 111951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,682 DEBUG Processing 420/899 atomic regions from SNP 125734 to 126334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,744 DEBUG Processing 199/646 atomic regions from SNP 59553 to 60153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,778 DEBUG Processing 340/1020 atomic regions from SNP 101722 to 102322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,803 DEBUG Processing 321/1130 atomic regions from SNP 96193 to 96793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,860 DEBUG Processing 434/855 atomic regions from SNP 129977 to 130577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,861 DEBUG Processing 373/477 atomic regions from SNP 111651 to 112251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,929 DEBUG Processing 421/899 atomic regions from SNP 126034 to 126634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,995 DEBUG Processing 200/646 atomic regions from SNP 59853 to 60453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,053 DEBUG Processing 341/1020 atomic regions from SNP 102022 to 102622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,094 DEBUG Processing 322/1130 atomic regions from SNP 96493 to 97093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,103 DEBUG Processing 374/477 atomic regions from SNP 111951 to 112551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,109 DEBUG Processing 435/855 atomic regions from SNP 130277 to 130877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,181 DEBUG Processing 422/899 atomic regions from SNP 126334 to 126934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,252 DEBUG Processing 201/646 atomic regions from SNP 60153 to 60753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,330 DEBUG Processing 342/1020 atomic regions from SNP 102322 to 102922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,336 DEBUG Processing 375/477 atomic regions from SNP 112251 to 112851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,352 DEBUG Processing 436/855 atomic regions from SNP 130577 to 131177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,384 DEBUG Processing 323/1130 atomic regions from SNP 96793 to 97393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,434 DEBUG Processing 423/899 atomic regions from SNP 126634 to 127234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,508 DEBUG Processing 202/646 atomic regions from SNP 60453 to 61053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,569 DEBUG Processing 376/477 atomic regions from SNP 112551 to 113151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,592 DEBUG Processing 437/855 atomic regions from SNP 130877 to 131477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,611 DEBUG Processing 343/1020 atomic regions from SNP 102622 to 103222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,676 DEBUG Processing 324/1130 atomic regions from SNP 97093 to 97693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,683 DEBUG Processing 424/899 atomic regions from SNP 126934 to 127534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,760 DEBUG Processing 203/646 atomic regions from SNP 60753 to 61353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,807 DEBUG Processing 377/477 atomic regions from SNP 112851 to 113451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,837 DEBUG Processing 438/855 atomic regions from SNP 131177 to 131777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,890 DEBUG Processing 344/1020 atomic regions from SNP 102922 to 103522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,925 DEBUG Processing 425/899 atomic regions from SNP 127234 to 127834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,973 DEBUG Processing 325/1130 atomic regions from SNP 97393 to 97993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,998 DEBUG Processing 204/646 atomic regions from SNP 61053 to 61653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,055 DEBUG Processing 378/477 atomic regions from SNP 113151 to 113751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,089 DEBUG Processing 439/855 atomic regions from SNP 131477 to 132077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,170 DEBUG Processing 426/899 atomic regions from SNP 127534 to 128134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,174 DEBUG Processing 345/1020 atomic regions from SNP 103222 to 103822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,237 DEBUG Processing 205/646 atomic regions from SNP 61353 to 61953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,278 DEBUG Processing 326/1130 atomic regions from SNP 97693 to 98293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,326 DEBUG Processing 379/477 atomic regions from SNP 113451 to 114051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,340 DEBUG Processing 440/855 atomic regions from SNP 131777 to 132377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,414 DEBUG Processing 427/899 atomic regions from SNP 127834 to 128434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,455 DEBUG Processing 346/1020 atomic regions from SNP 103522 to 104122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,476 DEBUG Processing 206/646 atomic regions from SNP 61653 to 62253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,588 DEBUG Processing 327/1130 atomic regions from SNP 97993 to 98593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,590 DEBUG Processing 380/477 atomic regions from SNP 113751 to 114351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,591 DEBUG Processing 441/855 atomic regions from SNP 132077 to 132677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,661 DEBUG Processing 428/899 atomic regions from SNP 128134 to 128734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,724 DEBUG Processing 207/646 atomic regions from SNP 61953 to 62553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,731 DEBUG Processing 347/1020 atomic regions from SNP 103822 to 104422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,829 DEBUG Processing 381/477 atomic regions from SNP 114051 to 114651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,837 DEBUG Processing 442/855 atomic regions from SNP 132377 to 132977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,891 DEBUG Processing 328/1130 atomic regions from SNP 98293 to 98893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,914 DEBUG Processing 429/899 atomic regions from SNP 128434 to 129034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,977 DEBUG Processing 208/646 atomic regions from SNP 62253 to 62853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,006 DEBUG Processing 348/1020 atomic regions from SNP 104122 to 104722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,061 DEBUG Processing 382/477 atomic regions from SNP 114351 to 114951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,078 DEBUG Processing 443/855 atomic regions from SNP 132677 to 133277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,169 DEBUG Processing 430/899 atomic regions from SNP 128734 to 129334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,191 DEBUG Processing 329/1130 atomic regions from SNP 98593 to 99193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,235 DEBUG Processing 209/646 atomic regions from SNP 62553 to 63153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,291 DEBUG Processing 349/1020 atomic regions from SNP 104422 to 105022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,294 DEBUG Processing 383/477 atomic regions from SNP 114651 to 115251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,319 DEBUG Processing 444/855 atomic regions from SNP 132977 to 133577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,445 DEBUG Processing 431/899 atomic regions from SNP 129034 to 129634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,486 DEBUG Processing 210/646 atomic regions from SNP 62853 to 63453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,500 DEBUG Processing 330/1130 atomic regions from SNP 98893 to 99493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,546 DEBUG Processing 384/477 atomic regions from SNP 114951 to 115551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,564 DEBUG Processing 445/855 atomic regions from SNP 133277 to 133877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,567 DEBUG Processing 350/1020 atomic regions from SNP 104722 to 105322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,710 DEBUG Processing 432/899 atomic regions from SNP 129334 to 129934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,730 DEBUG Processing 211/646 atomic regions from SNP 63153 to 63753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,806 DEBUG Processing 331/1130 atomic regions from SNP 99193 to 99793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,815 DEBUG Processing 446/855 atomic regions from SNP 133577 to 134177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,819 DEBUG Processing 385/477 atomic regions from SNP 115251 to 115851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,840 DEBUG Processing 351/1020 atomic regions from SNP 105022 to 105622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,971 DEBUG Processing 212/646 atomic regions from SNP 63453 to 64053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,972 DEBUG Processing 433/899 atomic regions from SNP 129634 to 130234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,070 DEBUG Processing 447/855 atomic regions from SNP 133877 to 134477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,090 DEBUG Processing 386/477 atomic regions from SNP 115551 to 116151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,101 DEBUG Processing 332/1130 atomic regions from SNP 99493 to 100093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,115 DEBUG Processing 352/1020 atomic regions from SNP 105322 to 105922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,209 DEBUG Processing 434/899 atomic regions from SNP 129934 to 130534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,217 DEBUG Processing 213/646 atomic regions from SNP 63753 to 64353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,323 DEBUG Processing 448/855 atomic regions from SNP 134177 to 134777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,337 DEBUG Processing 387/477 atomic regions from SNP 115851 to 116451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,393 DEBUG Processing 353/1020 atomic regions from SNP 105622 to 106222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,399 DEBUG Processing 333/1130 atomic regions from SNP 99793 to 100393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,452 DEBUG Processing 435/899 atomic regions from SNP 130234 to 130834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,472 DEBUG Processing 214/646 atomic regions from SNP 64053 to 64653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,572 DEBUG Processing 449/855 atomic regions from SNP 134477 to 135077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,575 DEBUG Processing 388/477 atomic regions from SNP 116151 to 116751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,667 DEBUG Processing 354/1020 atomic regions from SNP 105922 to 106522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,679 DEBUG Processing 334/1130 atomic regions from SNP 100093 to 100693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,698 DEBUG Processing 436/899 atomic regions from SNP 130534 to 131134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,730 DEBUG Processing 215/646 atomic regions from SNP 64353 to 64953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,815 DEBUG Processing 389/477 atomic regions from SNP 116451 to 117051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,821 DEBUG Processing 450/855 atomic regions from SNP 134777 to 135377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,951 DEBUG Processing 355/1020 atomic regions from SNP 106222 to 106822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,953 DEBUG Processing 437/899 atomic regions from SNP 130834 to 131434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,960 DEBUG Processing 335/1130 atomic regions from SNP 100393 to 100993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,993 DEBUG Processing 216/646 atomic regions from SNP 64653 to 65253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,060 DEBUG Processing 390/477 atomic regions from SNP 116751 to 117351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,075 DEBUG Processing 451/855 atomic regions from SNP 135077 to 135677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,199 DEBUG Processing 438/899 atomic regions from SNP 131134 to 131734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,224 DEBUG Processing 356/1020 atomic regions from SNP 106522 to 107122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,235 DEBUG Processing 336/1130 atomic regions from SNP 100693 to 101293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,249 DEBUG Processing 217/646 atomic regions from SNP 64953 to 65553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,303 DEBUG Processing 391/477 atomic regions from SNP 117051 to 117651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,326 DEBUG Processing 452/855 atomic regions from SNP 135377 to 135977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,441 DEBUG Processing 439/899 atomic regions from SNP 131434 to 132034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,505 DEBUG Processing 218/646 atomic regions from SNP 65253 to 65853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,506 DEBUG Processing 357/1020 atomic regions from SNP 106822 to 107422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,515 DEBUG Processing 337/1130 atomic regions from SNP 100993 to 101593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,549 DEBUG Processing 392/477 atomic regions from SNP 117351 to 117951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,584 DEBUG Processing 453/855 atomic regions from SNP 135677 to 136277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,691 DEBUG Processing 440/899 atomic regions from SNP 131734 to 132334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,757 DEBUG Processing 219/646 atomic regions from SNP 65553 to 66153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,784 DEBUG Processing 358/1020 atomic regions from SNP 107122 to 107722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,789 DEBUG Processing 393/477 atomic regions from SNP 117651 to 118251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,792 DEBUG Processing 338/1130 atomic regions from SNP 101293 to 101893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,833 DEBUG Processing 454/855 atomic regions from SNP 135977 to 136577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,932 DEBUG Processing 441/899 atomic regions from SNP 132034 to 132634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,008 DEBUG Processing 220/646 atomic regions from SNP 65853 to 66453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,031 DEBUG Processing 394/477 atomic regions from SNP 117951 to 118551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,063 DEBUG Processing 359/1020 atomic regions from SNP 107422 to 108022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,075 DEBUG Processing 339/1130 atomic regions from SNP 101593 to 102193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,084 DEBUG Processing 455/855 atomic regions from SNP 136277 to 136877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,172 DEBUG Processing 442/899 atomic regions from SNP 132334 to 132934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,259 DEBUG Processing 221/646 atomic regions from SNP 66153 to 66753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,274 DEBUG Processing 395/477 atomic regions from SNP 118251 to 118851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,337 DEBUG Processing 456/855 atomic regions from SNP 136577 to 137177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,339 DEBUG Processing 360/1020 atomic regions from SNP 107722 to 108322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,359 DEBUG Processing 340/1130 atomic regions from SNP 101893 to 102493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,414 DEBUG Processing 443/899 atomic regions from SNP 132634 to 133234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,512 DEBUG Processing 222/646 atomic regions from SNP 66453 to 67053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,516 DEBUG Processing 396/477 atomic regions from SNP 118551 to 119151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,593 DEBUG Processing 457/855 atomic regions from SNP 136877 to 137477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,617 DEBUG Processing 361/1020 atomic regions from SNP 108022 to 108622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,642 DEBUG Processing 341/1130 atomic regions from SNP 102193 to 102793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,662 DEBUG Processing 444/899 atomic regions from SNP 132934 to 133534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,753 DEBUG Processing 397/477 atomic regions from SNP 118851 to 119451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,758 DEBUG Processing 223/646 atomic regions from SNP 66753 to 67353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,848 DEBUG Processing 458/855 atomic regions from SNP 137177 to 137777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,891 DEBUG Processing 362/1020 atomic regions from SNP 108322 to 108922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,910 DEBUG Processing 445/899 atomic regions from SNP 133234 to 133834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,919 DEBUG Processing 342/1130 atomic regions from SNP 102493 to 103093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,983 DEBUG Processing 398/477 atomic regions from SNP 119151 to 119751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,007 DEBUG Processing 224/646 atomic regions from SNP 67053 to 67653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,105 DEBUG Processing 459/855 atomic regions from SNP 137477 to 138077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,164 DEBUG Processing 363/1020 atomic regions from SNP 108622 to 109222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,164 DEBUG Processing 446/899 atomic regions from SNP 133534 to 134134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,198 DEBUG Processing 343/1130 atomic regions from SNP 102793 to 103393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,213 DEBUG Processing 399/477 atomic regions from SNP 119451 to 120051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,256 DEBUG Processing 225/646 atomic regions from SNP 67353 to 67953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,357 DEBUG Processing 460/855 atomic regions from SNP 137777 to 138377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,419 DEBUG Processing 447/899 atomic regions from SNP 133834 to 134434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,436 DEBUG Processing 364/1020 atomic regions from SNP 108922 to 109522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,448 DEBUG Processing 400/477 atomic regions from SNP 119751 to 120351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,477 DEBUG Processing 344/1130 atomic regions from SNP 103093 to 103693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,502 DEBUG Processing 226/646 atomic regions from SNP 67653 to 68253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,614 DEBUG Processing 461/855 atomic regions from SNP 138077 to 138677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,676 DEBUG Processing 448/899 atomic regions from SNP 134134 to 134734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,689 DEBUG Processing 401/477 atomic regions from SNP 120051 to 120651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,705 DEBUG Processing 365/1020 atomic regions from SNP 109222 to 109822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,742 DEBUG Processing 227/646 atomic regions from SNP 67953 to 68553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,753 DEBUG Processing 345/1130 atomic regions from SNP 103393 to 103993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,859 DEBUG Processing 462/855 atomic regions from SNP 138377 to 138977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,936 DEBUG Processing 402/477 atomic regions from SNP 120351 to 120951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,936 DEBUG Processing 449/899 atomic regions from SNP 134434 to 135034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,973 DEBUG Processing 366/1020 atomic regions from SNP 109522 to 110122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,983 DEBUG Processing 228/646 atomic regions from SNP 68253 to 68853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,038 DEBUG Processing 346/1130 atomic regions from SNP 103693 to 104293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,099 DEBUG Processing 463/855 atomic regions from SNP 138677 to 139277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,180 DEBUG Processing 403/477 atomic regions from SNP 120651 to 121251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,190 DEBUG Processing 450/899 atomic regions from SNP 134734 to 135334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,227 DEBUG Processing 229/646 atomic regions from SNP 68553 to 69153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,244 DEBUG Processing 367/1020 atomic regions from SNP 109822 to 110422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,339 DEBUG Processing 464/855 atomic regions from SNP 138977 to 139577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,344 DEBUG Processing 347/1130 atomic regions from SNP 103993 to 104593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,421 DEBUG Processing 404/477 atomic regions from SNP 120951 to 121551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,440 DEBUG Processing 451/899 atomic regions from SNP 135034 to 135634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,472 DEBUG Processing 230/646 atomic regions from SNP 68853 to 69453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,513 DEBUG Processing 368/1020 atomic regions from SNP 110122 to 110722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,581 DEBUG Processing 465/855 atomic regions from SNP 139277 to 139877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,647 DEBUG Processing 348/1130 atomic regions from SNP 104293 to 104893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,663 DEBUG Processing 405/477 atomic regions from SNP 121251 to 121851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,692 DEBUG Processing 452/899 atomic regions from SNP 135334 to 135934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,721 DEBUG Processing 231/646 atomic regions from SNP 69153 to 69753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,787 DEBUG Processing 369/1020 atomic regions from SNP 110422 to 111022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,820 DEBUG Processing 466/855 atomic regions from SNP 139577 to 140177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,905 DEBUG Processing 406/477 atomic regions from SNP 121551 to 122151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,948 DEBUG Processing 453/899 atomic regions from SNP 135634 to 136234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,955 DEBUG Processing 349/1130 atomic regions from SNP 104593 to 105193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,971 DEBUG Processing 232/646 atomic regions from SNP 69453 to 70053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,056 DEBUG Processing 467/855 atomic regions from SNP 139877 to 140477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,065 DEBUG Processing 370/1020 atomic regions from SNP 110722 to 111322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,141 DEBUG Processing 407/477 atomic regions from SNP 121851 to 122451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:26,206 DEBUG Processing 454/899 atomic regions from SNP 135934 to 136534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,219 DEBUG Processing 233/646 atomic regions from SNP 69753 to 70353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,263 DEBUG Processing 350/1130 atomic regions from SNP 104893 to 105493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,298 DEBUG Processing 468/855 atomic regions from SNP 140177 to 140777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,344 DEBUG Processing 371/1020 atomic regions from SNP 111022 to 111622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,380 DEBUG Processing 408/477 atomic regions from SNP 122151 to 122751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:26,460 DEBUG Processing 455/899 atomic regions from SNP 136234 to 136834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,463 DEBUG Processing 234/646 atomic regions from SNP 70053 to 70653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,546 DEBUG Processing 469/855 atomic regions from SNP 140477 to 141077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,546 DEBUG Processing 351/1130 atomic regions from SNP 105193 to 105793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,613 DEBUG Processing 409/477 atomic regions from SNP 122451 to 123051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:26,626 DEBUG Processing 372/1020 atomic regions from SNP 111322 to 111922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,703 DEBUG Processing 235/646 atomic regions from SNP 70353 to 70953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,711 DEBUG Processing 456/899 atomic regions from SNP 136534 to 137134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,794 DEBUG Processing 470/855 atomic regions from SNP 140777 to 141377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,826 DEBUG Processing 352/1130 atomic regions from SNP 105493 to 106093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,850 DEBUG Processing 410/477 atomic regions from SNP 122751 to 123351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:26,903 DEBUG Processing 373/1020 atomic regions from SNP 111622 to 112222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,947 DEBUG Processing 236/646 atomic regions from SNP 70653 to 71253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,972 DEBUG Processing 457/899 atomic regions from SNP 136834 to 137434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,040 DEBUG Processing 471/855 atomic regions from SNP 141077 to 141677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,105 DEBUG Processing 353/1130 atomic regions from SNP 105793 to 106393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,113 DEBUG Processing 411/477 atomic regions from SNP 123051 to 123651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:27,184 DEBUG Processing 374/1020 atomic regions from SNP 111922 to 112522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,199 DEBUG Processing 237/646 atomic regions from SNP 70953 to 71553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,247 DEBUG Processing 458/899 atomic regions from SNP 137134 to 137734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,283 DEBUG Processing 472/855 atomic regions from SNP 141377 to 141977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,369 DEBUG Processing 412/477 atomic regions from SNP 123351 to 123951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:27,381 DEBUG Processing 354/1130 atomic regions from SNP 106093 to 106693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,445 DEBUG Processing 238/646 atomic regions from SNP 71253 to 71853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,456 DEBUG Processing 375/1020 atomic regions from SNP 112222 to 112822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,519 DEBUG Processing 473/855 atomic regions from SNP 141677 to 142277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,522 DEBUG Processing 459/899 atomic regions from SNP 137434 to 138034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,606 DEBUG Processing 413/477 atomic regions from SNP 123651 to 124251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:27,683 DEBUG Processing 355/1130 atomic regions from SNP 106393 to 106993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,690 DEBUG Processing 239/646 atomic regions from SNP 71553 to 72153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,726 DEBUG Processing 376/1020 atomic regions from SNP 112522 to 113122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,764 DEBUG Processing 474/855 atomic regions from SNP 141977 to 142577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,797 DEBUG Processing 460/899 atomic regions from SNP 137734 to 138334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,837 DEBUG Processing 414/477 atomic regions from SNP 123951 to 124551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:27,933 DEBUG Processing 240/646 atomic regions from SNP 71853 to 72453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,978 DEBUG Processing 356/1130 atomic regions from SNP 106693 to 107293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,993 DEBUG Processing 377/1020 atomic regions from SNP 112822 to 113422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,013 DEBUG Processing 475/855 atomic regions from SNP 142277 to 142877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,066 DEBUG Processing 461/899 atomic regions from SNP 138034 to 138634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,072 DEBUG Processing 415/477 atomic regions from SNP 124251 to 124851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:28,180 DEBUG Processing 241/646 atomic regions from SNP 72153 to 72753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,262 DEBUG Processing 378/1020 atomic regions from SNP 113122 to 113722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,264 DEBUG Processing 357/1130 atomic regions from SNP 106993 to 107593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,268 DEBUG Processing 476/855 atomic regions from SNP 142577 to 143177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,319 DEBUG Processing 416/477 atomic regions from SNP 124551 to 125151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:28,336 DEBUG Processing 462/899 atomic regions from SNP 138334 to 138934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,427 DEBUG Processing 242/646 atomic regions from SNP 72453 to 73053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,521 DEBUG Processing 477/855 atomic regions from SNP 142877 to 143477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,538 DEBUG Processing 379/1020 atomic regions from SNP 113422 to 114022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,577 DEBUG Processing 417/477 atomic regions from SNP 124851 to 125451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:28,581 DEBUG Processing 358/1130 atomic regions from SNP 107293 to 107893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,607 DEBUG Processing 463/899 atomic regions from SNP 138634 to 139234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,693 DEBUG Processing 243/646 atomic regions from SNP 72753 to 73353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,772 DEBUG Processing 478/855 atomic regions from SNP 143177 to 143777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,821 DEBUG Processing 380/1020 atomic regions from SNP 113722 to 114322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,830 DEBUG Processing 418/477 atomic regions from SNP 125151 to 125751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:28,868 DEBUG Processing 464/899 atomic regions from SNP 138934 to 139534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,902 DEBUG Processing 359/1130 atomic regions from SNP 107593 to 108193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,963 DEBUG Processing 244/646 atomic regions from SNP 73053 to 73653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,018 DEBUG Processing 479/855 atomic regions from SNP 143477 to 144077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,077 DEBUG Processing 419/477 atomic regions from SNP 125451 to 126051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:29,103 DEBUG Processing 381/1020 atomic regions from SNP 114022 to 114622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,128 DEBUG Processing 465/899 atomic regions from SNP 139234 to 139834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,190 DEBUG Processing 360/1130 atomic regions from SNP 107893 to 108493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,233 DEBUG Processing 245/646 atomic regions from SNP 73353 to 73953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,265 DEBUG Processing 480/855 atomic regions from SNP 143777 to 144377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,326 DEBUG Processing 420/477 atomic regions from SNP 125751 to 126351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:29,381 DEBUG Processing 466/899 atomic regions from SNP 139534 to 140134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,384 DEBUG Processing 382/1020 atomic regions from SNP 114322 to 114922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,472 DEBUG Processing 361/1130 atomic regions from SNP 108193 to 108793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,497 DEBUG Processing 246/646 atomic regions from SNP 73653 to 74253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,506 DEBUG Processing 481/855 atomic regions from SNP 144077 to 144677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,576 DEBUG Processing 421/477 atomic regions from SNP 126051 to 126651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:29,655 DEBUG Processing 467/899 atomic regions from SNP 139834 to 140434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,669 DEBUG Processing 383/1020 atomic regions from SNP 114622 to 115222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,737 DEBUG Processing 482/855 atomic regions from SNP 144377 to 144977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,737 DEBUG Processing 247/646 atomic regions from SNP 73953 to 74553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,762 DEBUG Processing 362/1130 atomic regions from SNP 108493 to 109093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,819 DEBUG Processing 422/477 atomic regions from SNP 126351 to 126951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:29,939 DEBUG Processing 468/899 atomic regions from SNP 140134 to 140734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,958 DEBUG Processing 384/1020 atomic regions from SNP 114922 to 115522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,976 DEBUG Processing 483/855 atomic regions from SNP 144677 to 145277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,982 DEBUG Processing 248/646 atomic regions from SNP 74253 to 74853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,032 DEBUG Processing 363/1130 atomic regions from SNP 108793 to 109393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,051 DEBUG Processing 423/477 atomic regions from SNP 126651 to 127251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:30,220 DEBUG Processing 469/899 atomic regions from SNP 140434 to 141034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,225 DEBUG Processing 484/855 atomic regions from SNP 144977 to 145577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,237 DEBUG Processing 249/646 atomic regions from SNP 74553 to 75153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,245 DEBUG Processing 385/1020 atomic regions from SNP 115222 to 115822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,286 DEBUG Processing 424/477 atomic regions from SNP 126951 to 127551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:30,310 DEBUG Processing 364/1130 atomic regions from SNP 109093 to 109693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,481 DEBUG Processing 485/855 atomic regions from SNP 145277 to 145877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,505 DEBUG Processing 250/646 atomic regions from SNP 74853 to 75453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,509 DEBUG Processing 470/899 atomic regions from SNP 140734 to 141334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,535 DEBUG Processing 425/477 atomic regions from SNP 127251 to 127851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:30,538 DEBUG Processing 386/1020 atomic regions from SNP 115522 to 116122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,595 DEBUG Processing 365/1130 atomic regions from SNP 109393 to 109993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,748 DEBUG Processing 486/855 atomic regions from SNP 145577 to 146177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,761 DEBUG Processing 251/646 atomic regions from SNP 75153 to 75753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,791 DEBUG Processing 426/477 atomic regions from SNP 127551 to 128151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:30,795 DEBUG Processing 471/899 atomic regions from SNP 141034 to 141634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,829 DEBUG Processing 387/1020 atomic regions from SNP 115822 to 116422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,880 DEBUG Processing 366/1130 atomic regions from SNP 109693 to 110293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,005 DEBUG Processing 487/855 atomic regions from SNP 145877 to 146477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,010 DEBUG Processing 252/646 atomic regions from SNP 75453 to 76053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,043 DEBUG Processing 427/477 atomic regions from SNP 127851 to 128451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:31,062 DEBUG Processing 472/899 atomic regions from SNP 141334 to 141934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,123 DEBUG Processing 388/1020 atomic regions from SNP 116122 to 116722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,168 DEBUG Processing 367/1130 atomic regions from SNP 109993 to 110593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,254 DEBUG Processing 488/855 atomic regions from SNP 146177 to 146777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,257 DEBUG Processing 253/646 atomic regions from SNP 75753 to 76353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,297 DEBUG Processing 428/477 atomic regions from SNP 128151 to 128751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:31,359 DEBUG Processing 473/899 atomic regions from SNP 141634 to 142234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,415 DEBUG Processing 389/1020 atomic regions from SNP 116422 to 117022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,455 DEBUG Processing 368/1130 atomic regions from SNP 110293 to 110893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,488 DEBUG Processing 489/855 atomic regions from SNP 146477 to 147077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,494 DEBUG Processing 254/646 atomic regions from SNP 76053 to 76653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,528 DEBUG Processing 429/477 atomic regions from SNP 128451 to 129051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:31,635 DEBUG Processing 474/899 atomic regions from SNP 141934 to 142534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,702 DEBUG Processing 390/1020 atomic regions from SNP 116722 to 117322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,729 DEBUG Processing 490/855 atomic regions from SNP 146777 to 147377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,737 DEBUG Processing 369/1130 atomic regions from SNP 110593 to 111193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,743 DEBUG Processing 255/646 atomic regions from SNP 76353 to 76953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,763 DEBUG Processing 430/477 atomic regions from SNP 128751 to 129351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:31,911 DEBUG Processing 475/899 atomic regions from SNP 142234 to 142834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,977 DEBUG Processing 491/855 atomic regions from SNP 147077 to 147677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,983 DEBUG Processing 391/1020 atomic regions from SNP 117022 to 117622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,996 DEBUG Processing 256/646 atomic regions from SNP 76653 to 77253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,004 DEBUG Processing 431/477 atomic regions from SNP 129051 to 129651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:32,022 DEBUG Processing 370/1130 atomic regions from SNP 110893 to 111493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,169 DEBUG Processing 476/899 atomic regions from SNP 142534 to 143134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,231 DEBUG Processing 492/855 atomic regions from SNP 147377 to 147977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,250 DEBUG Processing 432/477 atomic regions from SNP 129351 to 129951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:32,256 DEBUG Processing 257/646 atomic regions from SNP 76953 to 77553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,270 DEBUG Processing 392/1020 atomic regions from SNP 117322 to 117922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,329 DEBUG Processing 371/1130 atomic regions from SNP 111193 to 111793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,422 DEBUG Processing 477/899 atomic regions from SNP 142834 to 143434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,479 DEBUG Processing 493/855 atomic regions from SNP 147677 to 148277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,492 DEBUG Processing 433/477 atomic regions from SNP 129651 to 130251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:32,513 DEBUG Processing 258/646 atomic regions from SNP 77253 to 77853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,557 DEBUG Processing 393/1020 atomic regions from SNP 117622 to 118222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,623 DEBUG Processing 372/1130 atomic regions from SNP 111493 to 112093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,673 DEBUG Processing 478/899 atomic regions from SNP 143134 to 143734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,724 DEBUG Processing 494/855 atomic regions from SNP 147977 to 148577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,726 DEBUG Processing 434/477 atomic regions from SNP 129951 to 130551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:32,760 DEBUG Processing 259/646 atomic regions from SNP 77553 to 78153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,840 DEBUG Processing 394/1020 atomic regions from SNP 117922 to 118522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,908 DEBUG Processing 373/1130 atomic regions from SNP 111793 to 112393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,950 DEBUG Processing 479/899 atomic regions from SNP 143434 to 144034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,968 DEBUG Processing 435/477 atomic regions from SNP 130251 to 130851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:32,970 DEBUG Processing 495/855 atomic regions from SNP 148277 to 148877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,004 DEBUG Processing 260/646 atomic regions from SNP 77853 to 78453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,139 DEBUG Processing 395/1020 atomic regions from SNP 118222 to 118822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,187 DEBUG Processing 374/1130 atomic regions from SNP 112093 to 112693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,213 DEBUG Processing 436/477 atomic regions from SNP 130551 to 131151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:33,219 DEBUG Processing 496/855 atomic regions from SNP 148577 to 149177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,230 DEBUG Processing 480/899 atomic regions from SNP 143734 to 144334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,249 DEBUG Processing 261/646 atomic regions from SNP 78153 to 78753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,441 DEBUG Processing 396/1020 atomic regions from SNP 118522 to 119122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,460 DEBUG Processing 437/477 atomic regions from SNP 130851 to 131451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:33,471 DEBUG Processing 497/855 atomic regions from SNP 148877 to 149477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,471 DEBUG Processing 375/1130 atomic regions from SNP 112393 to 112993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,496 DEBUG Processing 262/646 atomic regions from SNP 78453 to 79053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,524 DEBUG Processing 481/899 atomic regions from SNP 144034 to 144634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,704 DEBUG Processing 438/477 atomic regions from SNP 131151 to 131751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:33,721 DEBUG Processing 397/1020 atomic regions from SNP 118822 to 119422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,724 DEBUG Processing 498/855 atomic regions from SNP 149177 to 149777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,744 DEBUG Processing 263/646 atomic regions from SNP 78753 to 79353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,754 DEBUG Processing 376/1130 atomic regions from SNP 112693 to 113293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,816 DEBUG Processing 482/899 atomic regions from SNP 144334 to 144934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,946 DEBUG Processing 439/477 atomic regions from SNP 131451 to 132051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:33,975 DEBUG Processing 499/855 atomic regions from SNP 149477 to 150077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,998 DEBUG Processing 264/646 atomic regions from SNP 79053 to 79653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,004 DEBUG Processing 398/1020 atomic regions from SNP 119122 to 119722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,036 DEBUG Processing 377/1130 atomic regions from SNP 112993 to 113593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,103 DEBUG Processing 483/899 atomic regions from SNP 144634 to 145234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,188 DEBUG Processing 440/477 atomic regions from SNP 131751 to 132351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:34,224 DEBUG Processing 500/855 atomic regions from SNP 149777 to 150377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,253 DEBUG Processing 265/646 atomic regions from SNP 79353 to 79953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,282 DEBUG Processing 399/1020 atomic regions from SNP 119422 to 120022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,314 DEBUG Processing 378/1130 atomic regions from SNP 113293 to 113893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,388 DEBUG Processing 484/899 atomic regions from SNP 144934 to 145534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,430 DEBUG Processing 441/477 atomic regions from SNP 132051 to 132651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:34,475 DEBUG Processing 501/855 atomic regions from SNP 150077 to 150677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,512 DEBUG Processing 266/646 atomic regions from SNP 79653 to 80253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,564 DEBUG Processing 400/1020 atomic regions from SNP 119722 to 120322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,588 DEBUG Processing 379/1130 atomic regions from SNP 113593 to 114193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,672 DEBUG Processing 442/477 atomic regions from SNP 132351 to 132951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:34,673 DEBUG Processing 485/899 atomic regions from SNP 145234 to 145834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,723 DEBUG Processing 502/855 atomic regions from SNP 150377 to 150977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,766 DEBUG Processing 267/646 atomic regions from SNP 79953 to 80553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,846 DEBUG Processing 401/1020 atomic regions from SNP 120022 to 120622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,861 DEBUG Processing 380/1130 atomic regions from SNP 113893 to 114493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,914 DEBUG Processing 443/477 atomic regions from SNP 132651 to 133251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:34,964 DEBUG Processing 486/899 atomic regions from SNP 145534 to 146134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,971 DEBUG Processing 503/855 atomic regions from SNP 150677 to 151277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,014 DEBUG Processing 268/646 atomic regions from SNP 80253 to 80853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,133 DEBUG Processing 402/1020 atomic regions from SNP 120322 to 120922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,138 DEBUG Processing 381/1130 atomic regions from SNP 114193 to 114793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,156 DEBUG Processing 444/477 atomic regions from SNP 132951 to 133551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:35,219 DEBUG Processing 504/855 atomic regions from SNP 150977 to 151577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,246 DEBUG Processing 487/899 atomic regions from SNP 145834 to 146434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,261 DEBUG Processing 269/646 atomic regions from SNP 80553 to 81153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,398 DEBUG Processing 445/477 atomic regions from SNP 133251 to 133851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:35,419 DEBUG Processing 382/1130 atomic regions from SNP 114493 to 115093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,424 DEBUG Processing 403/1020 atomic regions from SNP 120622 to 121222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,468 DEBUG Processing 505/855 atomic regions from SNP 151277 to 151877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,510 DEBUG Processing 270/646 atomic regions from SNP 80853 to 81453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,531 DEBUG Processing 488/899 atomic regions from SNP 146134 to 146734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,641 DEBUG Processing 446/477 atomic regions from SNP 133551 to 134151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:35,702 DEBUG Processing 383/1130 atomic regions from SNP 114793 to 115393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,710 DEBUG Processing 404/1020 atomic regions from SNP 120922 to 121522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,722 DEBUG Processing 506/855 atomic regions from SNP 151577 to 152177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,763 DEBUG Processing 271/646 atomic regions from SNP 81153 to 81753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,819 DEBUG Processing 489/899 atomic regions from SNP 146434 to 147034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,880 DEBUG Processing 447/477 atomic regions from SNP 133851 to 134451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:35,982 DEBUG Processing 384/1130 atomic regions from SNP 115093 to 115693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,992 DEBUG Processing 507/855 atomic regions from SNP 151877 to 152477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,012 DEBUG Processing 405/1020 atomic regions from SNP 121222 to 121822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,019 DEBUG Processing 272/646 atomic regions from SNP 81453 to 82053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,103 DEBUG Processing 490/899 atomic regions from SNP 146734 to 147334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,121 DEBUG Processing 448/477 atomic regions from SNP 134151 to 134751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:36,243 DEBUG Processing 508/855 atomic regions from SNP 152177 to 152777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,258 DEBUG Processing 385/1130 atomic regions from SNP 115393 to 115993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,274 DEBUG Processing 273/646 atomic regions from SNP 81753 to 82353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,319 DEBUG Processing 406/1020 atomic regions from SNP 121522 to 122122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,363 DEBUG Processing 449/477 atomic regions from SNP 134451 to 135051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:36,389 DEBUG Processing 491/899 atomic regions from SNP 147034 to 147634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,503 DEBUG Processing 509/855 atomic regions from SNP 152477 to 153077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,525 DEBUG Processing 274/646 atomic regions from SNP 82053 to 82653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,537 DEBUG Processing 386/1130 atomic regions from SNP 115693 to 116293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,607 DEBUG Processing 450/477 atomic regions from SNP 134751 to 135351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:36,610 DEBUG Processing 407/1020 atomic regions from SNP 121822 to 122422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,678 DEBUG Processing 492/899 atomic regions from SNP 147334 to 147934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,743 DEBUG Processing 510/855 atomic regions from SNP 152777 to 153377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,763 DEBUG Processing 275/646 atomic regions from SNP 82353 to 82953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,811 DEBUG Processing 387/1130 atomic regions from SNP 115993 to 116593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,845 DEBUG Processing 451/477 atomic regions from SNP 135051 to 135651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:36,894 DEBUG Processing 408/1020 atomic regions from SNP 122122 to 122722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,969 DEBUG Processing 493/899 atomic regions from SNP 147634 to 148234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,987 DEBUG Processing 511/855 atomic regions from SNP 153077 to 153677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,005 DEBUG Processing 276/646 atomic regions from SNP 82653 to 83253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,079 DEBUG Processing 452/477 atomic regions from SNP 135351 to 135951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:37,083 DEBUG Processing 388/1130 atomic regions from SNP 116293 to 116893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,177 DEBUG Processing 409/1020 atomic regions from SNP 122422 to 123022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,234 DEBUG Processing 512/855 atomic regions from SNP 153377 to 153977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,254 DEBUG Processing 494/899 atomic regions from SNP 147934 to 148534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,258 DEBUG Processing 277/646 atomic regions from SNP 82953 to 83553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,315 DEBUG Processing 453/477 atomic regions from SNP 135651 to 136251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:37,361 DEBUG Processing 389/1130 atomic regions from SNP 116593 to 117193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,457 DEBUG Processing 410/1020 atomic regions from SNP 122722 to 123322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,485 DEBUG Processing 513/855 atomic regions from SNP 153677 to 154277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,518 DEBUG Processing 278/646 atomic regions from SNP 83253 to 83853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,541 DEBUG Processing 495/899 atomic regions from SNP 148234 to 148834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,558 DEBUG Processing 454/477 atomic regions from SNP 135951 to 136551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:37,641 DEBUG Processing 390/1130 atomic regions from SNP 116893 to 117493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,727 DEBUG Processing 514/855 atomic regions from SNP 153977 to 154577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,738 DEBUG Processing 411/1020 atomic regions from SNP 123022 to 123622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,774 DEBUG Processing 279/646 atomic regions from SNP 83553 to 84153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,798 DEBUG Processing 455/477 atomic regions from SNP 136251 to 136851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:37,823 DEBUG Processing 496/899 atomic regions from SNP 148534 to 149134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,924 DEBUG Processing 391/1130 atomic regions from SNP 117193 to 117793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,966 DEBUG Processing 515/855 atomic regions from SNP 154277 to 154877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,013 DEBUG Processing 412/1020 atomic regions from SNP 123322 to 123922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,025 DEBUG Processing 280/646 atomic regions from SNP 83853 to 84453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,032 DEBUG Processing 456/477 atomic regions from SNP 136551 to 137151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:38,109 DEBUG Processing 497/899 atomic regions from SNP 148834 to 149434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,212 DEBUG Processing 516/855 atomic regions from SNP 154577 to 155177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,212 DEBUG Processing 392/1130 atomic regions from SNP 117493 to 118093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,264 DEBUG Processing 457/477 atomic regions from SNP 136851 to 137451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:38,271 DEBUG Processing 281/646 atomic regions from SNP 84153 to 84753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,286 DEBUG Processing 413/1020 atomic regions from SNP 123622 to 124222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,392 DEBUG Processing 498/899 atomic regions from SNP 149134 to 149734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,466 DEBUG Processing 517/855 atomic regions from SNP 154877 to 155477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,500 DEBUG Processing 393/1130 atomic regions from SNP 117793 to 118393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,500 DEBUG Processing 458/477 atomic regions from SNP 137151 to 137751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:38,519 DEBUG Processing 282/646 atomic regions from SNP 84453 to 85053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,557 DEBUG Processing 414/1020 atomic regions from SNP 123922 to 124522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,645 DEBUG Processing 499/899 atomic regions from SNP 149434 to 150034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,722 DEBUG Processing 518/855 atomic regions from SNP 155177 to 155777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,747 DEBUG Processing 459/477 atomic regions from SNP 137451 to 138051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:38,773 DEBUG Processing 283/646 atomic regions from SNP 84753 to 85353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,788 DEBUG Processing 394/1130 atomic regions from SNP 118093 to 118693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,848 DEBUG Processing 415/1020 atomic regions from SNP 124222 to 124822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,887 DEBUG Processing 500/899 atomic regions from SNP 149734 to 150334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,974 DEBUG Processing 519/855 atomic regions from SNP 155477 to 156077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,997 DEBUG Processing 460/477 atomic regions from SNP 137751 to 138351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:39,030 DEBUG Processing 284/646 atomic regions from SNP 85053 to 85653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,074 DEBUG Processing 395/1130 atomic regions from SNP 118393 to 118993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,126 DEBUG Processing 501/899 atomic regions from SNP 150034 to 150634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,138 DEBUG Processing 416/1020 atomic regions from SNP 124522 to 125122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,219 DEBUG Processing 520/855 atomic regions from SNP 155777 to 156377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,246 DEBUG Processing 461/477 atomic regions from SNP 138051 to 138651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:39,290 DEBUG Processing 285/646 atomic regions from SNP 85353 to 85953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,363 DEBUG Processing 396/1130 atomic regions from SNP 118693 to 119293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,373 DEBUG Processing 502/899 atomic regions from SNP 150334 to 150934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,410 DEBUG Processing 417/1020 atomic regions from SNP 124822 to 125422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,453 DEBUG Processing 521/855 atomic regions from SNP 156077 to 156677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,483 DEBUG Processing 462/477 atomic regions from SNP 138351 to 138951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:39,543 DEBUG Processing 286/646 atomic regions from SNP 85653 to 86253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,632 DEBUG Processing 503/899 atomic regions from SNP 150634 to 151234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,655 DEBUG Processing 397/1130 atomic regions from SNP 118993 to 119593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,707 DEBUG Processing 418/1020 atomic regions from SNP 125122 to 125722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,712 DEBUG Processing 522/855 atomic regions from SNP 156377 to 156977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,718 DEBUG Processing 463/477 atomic regions from SNP 138651 to 139251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:39,804 DEBUG Processing 287/646 atomic regions from SNP 85953 to 86553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,902 DEBUG Processing 504/899 atomic regions from SNP 150934 to 151534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,951 DEBUG Processing 398/1130 atomic regions from SNP 119293 to 119893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,964 DEBUG Processing 464/477 atomic regions from SNP 138951 to 139551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:39,990 DEBUG Processing 523/855 atomic regions from SNP 156677 to 157277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,022 DEBUG Processing 419/1020 atomic regions from SNP 125422 to 126022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,053 DEBUG Processing 288/646 atomic regions from SNP 86253 to 86853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,159 DEBUG Processing 505/899 atomic regions from SNP 151234 to 151834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,214 DEBUG Processing 465/477 atomic regions from SNP 139251 to 139851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:40,241 DEBUG Processing 399/1130 atomic regions from SNP 119593 to 120193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,243 DEBUG Processing 524/855 atomic regions from SNP 156977 to 157577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,299 DEBUG Processing 420/1020 atomic regions from SNP 125722 to 126322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,299 DEBUG Processing 289/646 atomic regions from SNP 86553 to 87153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,407 DEBUG Processing 506/899 atomic regions from SNP 151534 to 152134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,463 DEBUG Processing 466/477 atomic regions from SNP 139551 to 140151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:40,502 DEBUG Processing 525/855 atomic regions from SNP 157277 to 157877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,532 DEBUG Processing 400/1130 atomic regions from SNP 119893 to 120493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,561 DEBUG Processing 290/646 atomic regions from SNP 86853 to 87453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,599 DEBUG Processing 421/1020 atomic regions from SNP 126022 to 126622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,651 DEBUG Processing 507/899 atomic regions from SNP 151834 to 152434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,704 DEBUG Processing 467/477 atomic regions from SNP 139851 to 140451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:40,754 DEBUG Processing 526/855 atomic regions from SNP 157577 to 158177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,813 DEBUG Processing 291/646 atomic regions from SNP 87153 to 87753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,813 DEBUG Processing 401/1130 atomic regions from SNP 120193 to 120793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,878 DEBUG Processing 422/1020 atomic regions from SNP 126322 to 126922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,898 DEBUG Processing 508/899 atomic regions from SNP 152134 to 152734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,946 DEBUG Processing 468/477 atomic regions from SNP 140151 to 140751 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:41,008 DEBUG Processing 527/855 atomic regions from SNP 157877 to 158477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,065 DEBUG Processing 292/646 atomic regions from SNP 87453 to 88053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,093 DEBUG Processing 402/1130 atomic regions from SNP 120493 to 121093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,144 DEBUG Processing 509/899 atomic regions from SNP 152434 to 153034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,152 DEBUG Processing 423/1020 atomic regions from SNP 126622 to 127222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,185 DEBUG Processing 469/477 atomic regions from SNP 140451 to 141051 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:41,253 DEBUG Processing 528/855 atomic regions from SNP 158177 to 158777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,316 DEBUG Processing 293/646 atomic regions from SNP 87753 to 88353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,379 DEBUG Processing 403/1130 atomic regions from SNP 120793 to 121393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,395 DEBUG Processing 510/899 atomic regions from SNP 152734 to 153334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,428 DEBUG Processing 470/477 atomic regions from SNP 140751 to 141351 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:41,429 DEBUG Processing 424/1020 atomic regions from SNP 126922 to 127522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,496 DEBUG Processing 529/855 atomic regions from SNP 158477 to 159077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,571 DEBUG Processing 294/646 atomic regions from SNP 88053 to 88653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,649 DEBUG Processing 511/899 atomic regions from SNP 153034 to 153634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,672 DEBUG Processing 471/477 atomic regions from SNP 141051 to 141651 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:41,689 DEBUG Processing 404/1130 atomic regions from SNP 121093 to 121693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,704 DEBUG Processing 425/1020 atomic regions from SNP 127222 to 127822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,743 DEBUG Processing 530/855 atomic regions from SNP 158777 to 159377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,819 DEBUG Processing 295/646 atomic regions from SNP 88353 to 88953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,900 DEBUG Processing 512/899 atomic regions from SNP 153334 to 153934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,917 DEBUG Processing 472/477 atomic regions from SNP 141351 to 141951 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:41,978 DEBUG Processing 426/1020 atomic regions from SNP 127522 to 128122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,979 DEBUG Processing 405/1130 atomic regions from SNP 121393 to 121993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,993 DEBUG Processing 531/855 atomic regions from SNP 159077 to 159677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,070 DEBUG Processing 296/646 atomic regions from SNP 88653 to 89253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,149 DEBUG Processing 513/899 atomic regions from SNP 153634 to 154234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,158 DEBUG Processing 473/477 atomic regions from SNP 141651 to 142251 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:42,243 DEBUG Processing 532/855 atomic regions from SNP 159377 to 159977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,250 DEBUG Processing 427/1020 atomic regions from SNP 127822 to 128422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,265 DEBUG Processing 406/1130 atomic regions from SNP 121693 to 122293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,315 DEBUG Processing 297/646 atomic regions from SNP 88953 to 89553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,395 DEBUG Processing 474/477 atomic regions from SNP 141951 to 142551 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:42,398 DEBUG Processing 514/899 atomic regions from SNP 153934 to 154534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,493 DEBUG Processing 533/855 atomic regions from SNP 159677 to 160277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,528 DEBUG Processing 428/1020 atomic regions from SNP 128122 to 128722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,552 DEBUG Processing 407/1130 atomic regions from SNP 121993 to 122593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,568 DEBUG Processing 298/646 atomic regions from SNP 89253 to 89853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,634 DEBUG Processing 475/477 atomic regions from SNP 142251 to 142851 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:42,650 DEBUG Processing 515/899 atomic regions from SNP 154234 to 154834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,750 DEBUG Processing 534/855 atomic regions from SNP 159977 to 160577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,811 DEBUG Processing 429/1020 atomic regions from SNP 128422 to 129022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,820 DEBUG Processing 299/646 atomic regions from SNP 89553 to 90153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,842 DEBUG Processing 408/1130 atomic regions from SNP 122293 to 122893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,881 DEBUG Processing 476/477 atomic regions from SNP 142551 to 143151 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:42,910 DEBUG Processing 516/899 atomic regions from SNP 154534 to 155134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,998 DEBUG Processing 535/855 atomic regions from SNP 160277 to 160877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,068 DEBUG Processing 300/646 atomic regions from SNP 89853 to 90453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,087 DEBUG Processing 430/1020 atomic regions from SNP 128722 to 129322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,115 DEBUG Processing 409/1130 atomic regions from SNP 122593 to 123193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,118 DEBUG Processing 477/477 atomic regions from SNP 142851 to 143451 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:43,188 DEBUG Processing 517/899 atomic regions from SNP 154834 to 155434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,243 DEBUG Processing 536/855 atomic regions from SNP 160577 to 161177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,244 DEBUG Unique SNPs positions in subchromosome 4: 143452 2025-01-31 09:46:43,320 DEBUG Processing 301/646 atomic regions from SNP 90153 to 90753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,365 DEBUG Processing 431/1020 atomic regions from SNP 129022 to 129622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,391 DEBUG Processing 410/1130 atomic regions from SNP 122893 to 123493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,472 DEBUG Processing 518/899 atomic regions from SNP 155134 to 155734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,492 DEBUG Processing 537/855 atomic regions from SNP 160877 to 161477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,579 DEBUG Processing 302/646 atomic regions from SNP 90453 to 91053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,658 DEBUG Processing 432/1020 atomic regions from SNP 129322 to 129922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,661 DEBUG Processing 411/1130 atomic regions from SNP 123193 to 123793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,739 DEBUG Processing 538/855 atomic regions from SNP 161177 to 161777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,762 DEBUG Processing 519/899 atomic regions from SNP 155434 to 156034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,841 DEBUG Processing 303/646 atomic regions from SNP 90753 to 91353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,931 DEBUG Processing 412/1130 atomic regions from SNP 123493 to 124093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,950 DEBUG Processing 433/1020 atomic regions from SNP 129622 to 130222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,987 DEBUG Processing 539/855 atomic regions from SNP 161477 to 162077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,045 DEBUG Processing 520/899 atomic regions from SNP 155734 to 156334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,049 DEBUG Subchromosome time: 133.88670632010326, subchromosome SNPs: 143452 2025-01-31 09:46:44,068 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:44,104 DEBUG Processing 304/646 atomic regions from SNP 91053 to 91653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,206 DEBUG Processing 413/1130 atomic regions from SNP 123793 to 124393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,221 DEBUG Processing 434/1020 atomic regions from SNP 129922 to 130522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,231 DEBUG Processing 540/855 atomic regions from SNP 161777 to 162377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,328 DEBUG Processing 521/899 atomic regions from SNP 156034 to 156634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,362 DEBUG Processing 305/646 atomic regions from SNP 91353 to 91953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,490 DEBUG Processing 414/1130 atomic regions from SNP 124093 to 124693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,495 DEBUG Processing 435/1020 atomic regions from SNP 130222 to 130822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,499 DEBUG Processing 541/855 atomic regions from SNP 162077 to 162677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,611 DEBUG Processing 522/899 atomic regions from SNP 156334 to 156934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,614 DEBUG Processing 306/646 atomic regions from SNP 91653 to 92253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,752 DEBUG Processing 542/855 atomic regions from SNP 162377 to 162977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,771 DEBUG Processing 436/1020 atomic regions from SNP 130522 to 131122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,783 DEBUG Processing 415/1130 atomic regions from SNP 124393 to 124993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,865 DEBUG Processing 307/646 atomic regions from SNP 91953 to 92553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,892 DEBUG Processing 523/899 atomic regions from SNP 156634 to 157234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,006 DEBUG Processing 543/855 atomic regions from SNP 162677 to 163277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,052 DEBUG Processing 437/1020 atomic regions from SNP 130822 to 131422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,088 DEBUG Processing 416/1130 atomic regions from SNP 124693 to 125293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,116 DEBUG Processing 308/646 atomic regions from SNP 92253 to 92853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,174 DEBUG Processing 524/899 atomic regions from SNP 156934 to 157534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,265 DEBUG Processing 544/855 atomic regions from SNP 162977 to 163577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,355 DEBUG Processing 438/1020 atomic regions from SNP 131122 to 131722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,378 DEBUG Processing 309/646 atomic regions from SNP 92553 to 93153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,403 DEBUG Processing 417/1130 atomic regions from SNP 124993 to 125593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,463 DEBUG Processing 525/899 atomic regions from SNP 157234 to 157834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,522 DEBUG Processing 545/855 atomic regions from SNP 163277 to 163877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,641 DEBUG Processing 310/646 atomic regions from SNP 92853 to 93453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,660 DEBUG Processing 439/1020 atomic regions from SNP 131422 to 132022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,718 DEBUG Processing 418/1130 atomic regions from SNP 125293 to 125893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,748 DEBUG Processing 526/899 atomic regions from SNP 157534 to 158134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,761 DEBUG Processing 546/855 atomic regions from SNP 163577 to 164177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,904 DEBUG Processing 311/646 atomic regions from SNP 93153 to 93753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,948 DEBUG Processing 440/1020 atomic regions from SNP 131722 to 132322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,000 DEBUG Processing 547/855 atomic regions from SNP 163877 to 164477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,031 DEBUG Processing 419/1130 atomic regions from SNP 125593 to 126193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,032 DEBUG Processing 527/899 atomic regions from SNP 157834 to 158434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,161 DEBUG Processing 312/646 atomic regions from SNP 93453 to 94053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,234 DEBUG Processing 441/1020 atomic regions from SNP 132022 to 132622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,244 DEBUG Processing 548/855 atomic regions from SNP 164177 to 164777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,313 DEBUG Processing 528/899 atomic regions from SNP 158134 to 158734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,338 DEBUG Processing 420/1130 atomic regions from SNP 125893 to 126493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,420 DEBUG Processing 313/646 atomic regions from SNP 93753 to 94353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,488 DEBUG Processing 549/855 atomic regions from SNP 164477 to 165077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,520 DEBUG Processing 442/1020 atomic regions from SNP 132322 to 132922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,598 DEBUG Processing 529/899 atomic regions from SNP 158434 to 159034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,638 DEBUG Processing 421/1130 atomic regions from SNP 126193 to 126793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,675 DEBUG Processing 314/646 atomic regions from SNP 94053 to 94653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,734 DEBUG Processing 550/855 atomic regions from SNP 164777 to 165377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,803 DEBUG Processing 443/1020 atomic regions from SNP 132622 to 133222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,878 DEBUG Processing 530/899 atomic regions from SNP 158734 to 159334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,920 DEBUG Processing 315/646 atomic regions from SNP 94353 to 94953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,942 DEBUG Processing 422/1130 atomic regions from SNP 126493 to 127093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,980 DEBUG Processing 551/855 atomic regions from SNP 165077 to 165677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,088 DEBUG Processing 444/1020 atomic regions from SNP 132922 to 133522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,154 DEBUG Processing 531/899 atomic regions from SNP 159034 to 159634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,172 DEBUG Processing 316/646 atomic regions from SNP 94653 to 95253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,221 DEBUG Processing 552/855 atomic regions from SNP 165377 to 165977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,249 DEBUG Processing 423/1130 atomic regions from SNP 126793 to 127393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,366 DEBUG Processing 445/1020 atomic regions from SNP 133222 to 133822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,426 DEBUG Processing 532/899 atomic regions from SNP 159334 to 159934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,429 DEBUG Processing 317/646 atomic regions from SNP 94953 to 95553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,461 DEBUG Processing 553/855 atomic regions from SNP 165677 to 166277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,553 DEBUG Processing 424/1130 atomic regions from SNP 127093 to 127693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,648 DEBUG Processing 446/1020 atomic regions from SNP 133522 to 134122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,695 DEBUG Processing 318/646 atomic regions from SNP 95253 to 95853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,702 DEBUG Processing 533/899 atomic regions from SNP 159634 to 160234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,706 DEBUG Processing 554/855 atomic regions from SNP 165977 to 166577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,821 DEBUG Processing 425/1130 atomic regions from SNP 127393 to 127993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,933 DEBUG Processing 447/1020 atomic regions from SNP 133822 to 134422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,962 DEBUG Processing 555/855 atomic regions from SNP 166277 to 166877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,968 DEBUG Processing 319/646 atomic regions from SNP 95553 to 96153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,985 DEBUG Processing 534/899 atomic regions from SNP 159934 to 160534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,102 DEBUG Processing 426/1130 atomic regions from SNP 127693 to 128293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,224 DEBUG Processing 448/1020 atomic regions from SNP 134122 to 134722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,225 DEBUG Processing 556/855 atomic regions from SNP 166577 to 167177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,242 DEBUG Processing 320/646 atomic regions from SNP 95853 to 96453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,250 DEBUG Processing 535/899 atomic regions from SNP 160234 to 160834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,373 DEBUG Processing 427/1130 atomic regions from SNP 127993 to 128593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,475 DEBUG Processing 557/855 atomic regions from SNP 166877 to 167477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,507 DEBUG Processing 321/646 atomic regions from SNP 96153 to 96753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,508 DEBUG Processing 449/1020 atomic regions from SNP 134422 to 135022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,539 DEBUG Processing 536/899 atomic regions from SNP 160534 to 161134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,649 DEBUG Processing 428/1130 atomic regions from SNP 128293 to 128893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,717 DEBUG Processing 558/855 atomic regions from SNP 167177 to 167777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,762 DEBUG Processing 322/646 atomic regions from SNP 96453 to 97053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,792 DEBUG Processing 450/1020 atomic regions from SNP 134722 to 135322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,821 DEBUG Processing 537/899 atomic regions from SNP 160834 to 161434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,923 DEBUG Processing 429/1130 atomic regions from SNP 128593 to 129193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,956 DEBUG Processing 559/855 atomic regions from SNP 167477 to 168077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,014 DEBUG Processing 323/646 atomic regions from SNP 96753 to 97353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,074 DEBUG Processing 451/1020 atomic regions from SNP 135022 to 135622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,101 DEBUG Processing 538/899 atomic regions from SNP 161134 to 161734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,197 DEBUG Processing 560/855 atomic regions from SNP 167777 to 168377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,199 DEBUG Processing 430/1130 atomic regions from SNP 128893 to 129493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,260 DEBUG Processing 324/646 atomic regions from SNP 97053 to 97653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,352 DEBUG Processing 452/1020 atomic regions from SNP 135322 to 135922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,370 DEBUG Processing 539/899 atomic regions from SNP 161434 to 162034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,443 DEBUG Processing 561/855 atomic regions from SNP 168077 to 168677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,481 DEBUG Processing 431/1130 atomic regions from SNP 129193 to 129793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,506 DEBUG Processing 325/646 atomic regions from SNP 97353 to 97953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,628 DEBUG Processing 540/899 atomic regions from SNP 161734 to 162334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,629 DEBUG Processing 453/1020 atomic regions from SNP 135622 to 136222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,690 DEBUG Processing 562/855 atomic regions from SNP 168377 to 168977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,752 DEBUG Processing 326/646 atomic regions from SNP 97653 to 98253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,765 DEBUG Processing 432/1130 atomic regions from SNP 129493 to 130093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,879 DEBUG Processing 541/899 atomic regions from SNP 162034 to 162634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,908 DEBUG Processing 454/1020 atomic regions from SNP 135922 to 136522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,958 DEBUG Processing 563/855 atomic regions from SNP 168677 to 169277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,997 DEBUG Processing 327/646 atomic regions from SNP 97953 to 98553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,044 DEBUG Processing 433/1130 atomic regions from SNP 129793 to 130393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,123 DEBUG Processing 542/899 atomic regions from SNP 162334 to 162934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,186 DEBUG Processing 455/1020 atomic regions from SNP 136222 to 136822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,230 DEBUG Processing 564/855 atomic regions from SNP 168977 to 169577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,255 DEBUG Processing 328/646 atomic regions from SNP 98253 to 98853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,319 DEBUG Processing 434/1130 atomic regions from SNP 130093 to 130693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,374 DEBUG Processing 543/899 atomic regions from SNP 162634 to 163234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,463 DEBUG Processing 456/1020 atomic regions from SNP 136522 to 137122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,499 DEBUG Processing 565/855 atomic regions from SNP 169277 to 169877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,525 DEBUG Processing 329/646 atomic regions from SNP 98553 to 99153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,596 DEBUG Processing 435/1130 atomic regions from SNP 130393 to 130993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,628 DEBUG Processing 544/899 atomic regions from SNP 162934 to 163534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,751 DEBUG Processing 457/1020 atomic regions from SNP 136822 to 137422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,761 DEBUG Processing 566/855 atomic regions from SNP 169577 to 170177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,799 DEBUG Processing 330/646 atomic regions from SNP 98853 to 99453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,869 DEBUG Processing 436/1130 atomic regions from SNP 130693 to 131293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,879 DEBUG Processing 545/899 atomic regions from SNP 163234 to 163834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,997 DEBUG Processing 567/855 atomic regions from SNP 169877 to 170477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,024 DEBUG Processing 458/1020 atomic regions from SNP 137122 to 137722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,059 DEBUG Processing 331/646 atomic regions from SNP 99153 to 99753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,126 DEBUG Processing 546/899 atomic regions from SNP 163534 to 164134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,144 DEBUG Processing 437/1130 atomic regions from SNP 130993 to 131593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,229 DEBUG Processing 568/855 atomic regions from SNP 170177 to 170777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,296 DEBUG Processing 459/1020 atomic regions from SNP 137422 to 138022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,307 DEBUG Processing 332/646 atomic regions from SNP 99453 to 100053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,373 DEBUG Processing 547/899 atomic regions from SNP 163834 to 164434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,415 DEBUG Processing 438/1130 atomic regions from SNP 131293 to 131893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,466 DEBUG Processing 569/855 atomic regions from SNP 170477 to 171077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,553 DEBUG Processing 333/646 atomic regions from SNP 99753 to 100353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,563 DEBUG Processing 460/1020 atomic regions from SNP 137722 to 138322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,617 DEBUG Processing 548/899 atomic regions from SNP 164134 to 164734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,690 DEBUG Processing 439/1130 atomic regions from SNP 131593 to 132193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,705 DEBUG Processing 570/855 atomic regions from SNP 170777 to 171377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,795 DEBUG Processing 334/646 atomic regions from SNP 100053 to 100653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,834 DEBUG Processing 461/1020 atomic regions from SNP 138022 to 138622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,859 DEBUG Processing 549/899 atomic regions from SNP 164434 to 165034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,947 DEBUG Processing 571/855 atomic regions from SNP 171077 to 171677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,964 DEBUG Processing 440/1130 atomic regions from SNP 131893 to 132493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,042 DEBUG Processing 335/646 atomic regions from SNP 100353 to 100953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,109 DEBUG Processing 550/899 atomic regions from SNP 164734 to 165334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,115 DEBUG Processing 462/1020 atomic regions from SNP 138322 to 138922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,197 DEBUG Processing 572/855 atomic regions from SNP 171377 to 171977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,245 DEBUG Processing 441/1130 atomic regions from SNP 132193 to 132793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,300 DEBUG Processing 336/646 atomic regions from SNP 100653 to 101253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,371 DEBUG Processing 551/899 atomic regions from SNP 165034 to 165634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,392 DEBUG Processing 463/1020 atomic regions from SNP 138622 to 139222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,458 DEBUG Processing 573/855 atomic regions from SNP 171677 to 172277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,529 DEBUG Processing 442/1130 atomic regions from SNP 132493 to 133093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,545 DEBUG Processing 337/646 atomic regions from SNP 100953 to 101553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,658 DEBUG Processing 552/899 atomic regions from SNP 165334 to 165934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,670 DEBUG Processing 464/1020 atomic regions from SNP 138922 to 139522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,732 DEBUG Processing 574/855 atomic regions from SNP 171977 to 172577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,792 DEBUG Processing 338/646 atomic regions from SNP 101253 to 101853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,810 DEBUG Processing 443/1130 atomic regions from SNP 132793 to 133393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,863 DEBUG Segmenting atomic regions: 2025-01-31 09:46:52,931 DEBUG Processing 553/899 atomic regions from SNP 165634 to 166234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,951 DEBUG Processing 465/1020 atomic regions from SNP 139222 to 139822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,976 DEBUG Processing 1/236 atomic regions from SNP 0 to 601 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,996 DEBUG Processing 575/855 atomic regions from SNP 172277 to 172877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,057 DEBUG Processing 339/646 atomic regions from SNP 101553 to 102153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,094 DEBUG Processing 444/1130 atomic regions from SNP 133093 to 133693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,192 DEBUG Processing 554/899 atomic regions from SNP 165934 to 166534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,208 DEBUG Processing 2/236 atomic regions from SNP 301 to 902 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,226 DEBUG Processing 466/1020 atomic regions from SNP 139522 to 140122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,239 DEBUG Processing 576/855 atomic regions from SNP 172577 to 173177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,321 DEBUG Processing 340/646 atomic regions from SNP 101853 to 102453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,375 DEBUG Processing 445/1130 atomic regions from SNP 133393 to 133993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,441 DEBUG Processing 3/236 atomic regions from SNP 602 to 1203 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,470 DEBUG Processing 555/899 atomic regions from SNP 166234 to 166834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,480 DEBUG Processing 577/855 atomic regions from SNP 172877 to 173477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,496 DEBUG Processing 467/1020 atomic regions from SNP 139822 to 140422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,577 DEBUG Processing 341/646 atomic regions from SNP 102153 to 102753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,652 DEBUG Processing 446/1130 atomic regions from SNP 133693 to 134293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,681 DEBUG Processing 4/236 atomic regions from SNP 903 to 1504 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,721 DEBUG Processing 578/855 atomic regions from SNP 173177 to 173777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,739 DEBUG Processing 556/899 atomic regions from SNP 166534 to 167134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,764 DEBUG Processing 468/1020 atomic regions from SNP 140122 to 140722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,834 DEBUG Processing 342/646 atomic regions from SNP 102453 to 103053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,917 DEBUG Processing 5/236 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,928 DEBUG Processing 447/1130 atomic regions from SNP 133993 to 134593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,964 DEBUG Processing 579/855 atomic regions from SNP 173477 to 174077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,013 DEBUG Processing 557/899 atomic regions from SNP 166834 to 167434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,032 DEBUG Processing 469/1020 atomic regions from SNP 140422 to 141022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,079 DEBUG Processing 343/646 atomic regions from SNP 102753 to 103353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,152 DEBUG Processing 6/236 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,206 DEBUG Processing 448/1130 atomic regions from SNP 134293 to 134893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,212 DEBUG Processing 580/855 atomic regions from SNP 173777 to 174377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,304 DEBUG Processing 558/899 atomic regions from SNP 167134 to 167734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,308 DEBUG Processing 470/1020 atomic regions from SNP 140722 to 141322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,326 DEBUG Processing 344/646 atomic regions from SNP 103053 to 103653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,384 DEBUG Processing 7/236 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,470 DEBUG Processing 581/855 atomic regions from SNP 174077 to 174677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,486 DEBUG Processing 449/1130 atomic regions from SNP 134593 to 135193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,574 DEBUG Processing 345/646 atomic regions from SNP 103353 to 103953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,588 DEBUG Processing 471/1020 atomic regions from SNP 141022 to 141622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,594 DEBUG Processing 559/899 atomic regions from SNP 167434 to 168034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,613 DEBUG Processing 8/236 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,715 DEBUG Processing 582/855 atomic regions from SNP 174377 to 174977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,762 DEBUG Processing 450/1130 atomic regions from SNP 134893 to 135493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,825 DEBUG Processing 346/646 atomic regions from SNP 103653 to 104253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,854 DEBUG Processing 9/236 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,861 DEBUG Processing 472/1020 atomic regions from SNP 141322 to 141922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,868 DEBUG Processing 560/899 atomic regions from SNP 167734 to 168334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,961 DEBUG Processing 583/855 atomic regions from SNP 174677 to 175277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,035 DEBUG Processing 451/1130 atomic regions from SNP 135193 to 135793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,074 DEBUG Processing 347/646 atomic regions from SNP 103953 to 104553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,091 DEBUG Processing 10/236 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,134 DEBUG Processing 561/899 atomic regions from SNP 168034 to 168634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,134 DEBUG Processing 473/1020 atomic regions from SNP 141622 to 142222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,213 DEBUG Processing 584/855 atomic regions from SNP 174977 to 175577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,306 DEBUG Processing 452/1130 atomic regions from SNP 135493 to 136093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,321 DEBUG Processing 348/646 atomic regions from SNP 104253 to 104853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,323 DEBUG Processing 11/236 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,406 DEBUG Processing 474/1020 atomic regions from SNP 141922 to 142522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,406 DEBUG Processing 562/899 atomic regions from SNP 168334 to 168934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,468 DEBUG Processing 585/855 atomic regions from SNP 175277 to 175877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,551 DEBUG Processing 12/236 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,565 DEBUG Processing 349/646 atomic regions from SNP 104553 to 105153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,577 DEBUG Processing 453/1130 atomic regions from SNP 135793 to 136393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,676 DEBUG Processing 475/1020 atomic regions from SNP 142222 to 142822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,692 DEBUG Processing 563/899 atomic regions from SNP 168634 to 169234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,724 DEBUG Processing 586/855 atomic regions from SNP 175577 to 176177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,781 DEBUG Processing 13/236 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,808 DEBUG Processing 350/646 atomic regions from SNP 104853 to 105453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,848 DEBUG Processing 454/1130 atomic regions from SNP 136093 to 136693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,945 DEBUG Processing 476/1020 atomic regions from SNP 142522 to 143122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,954 DEBUG Processing 564/899 atomic regions from SNP 168934 to 169534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,974 DEBUG Processing 587/855 atomic regions from SNP 175877 to 176477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,020 DEBUG Processing 14/236 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,056 DEBUG Processing 351/646 atomic regions from SNP 105153 to 105753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,120 DEBUG Processing 455/1130 atomic regions from SNP 136393 to 136993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,207 DEBUG Processing 565/899 atomic regions from SNP 169234 to 169834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,215 DEBUG Processing 477/1020 atomic regions from SNP 142822 to 143422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,243 DEBUG Processing 588/855 atomic regions from SNP 176177 to 176777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,256 DEBUG Processing 15/236 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,310 DEBUG Processing 352/646 atomic regions from SNP 105453 to 106053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,395 DEBUG Processing 456/1130 atomic regions from SNP 136693 to 137293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,466 DEBUG Processing 566/899 atomic regions from SNP 169534 to 170134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,487 DEBUG Processing 478/1020 atomic regions from SNP 143122 to 143722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,500 DEBUG Processing 16/236 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,517 DEBUG Processing 589/855 atomic regions from SNP 176477 to 177077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,566 DEBUG Processing 353/646 atomic regions from SNP 105753 to 106353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,679 DEBUG Processing 457/1130 atomic regions from SNP 136993 to 137593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,733 DEBUG Processing 567/899 atomic regions from SNP 169834 to 170434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,750 DEBUG Processing 17/236 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,765 DEBUG Processing 479/1020 atomic regions from SNP 143422 to 144022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,775 DEBUG Processing 590/855 atomic regions from SNP 176777 to 177377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,826 DEBUG Processing 354/646 atomic regions from SNP 106053 to 106653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,954 DEBUG Processing 458/1130 atomic regions from SNP 137293 to 137893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,993 DEBUG Processing 18/236 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,020 DEBUG Processing 568/899 atomic regions from SNP 170134 to 170734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,036 DEBUG Processing 480/1020 atomic regions from SNP 143722 to 144322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,042 DEBUG Processing 591/855 atomic regions from SNP 177077 to 177677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,080 DEBUG Processing 355/646 atomic regions from SNP 106353 to 106953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,235 DEBUG Processing 459/1130 atomic regions from SNP 137593 to 138193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,245 DEBUG Processing 19/236 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,309 DEBUG Processing 592/855 atomic regions from SNP 177377 to 177977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,317 DEBUG Processing 481/1020 atomic regions from SNP 144022 to 144622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,319 DEBUG Processing 569/899 atomic regions from SNP 170434 to 171034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,342 DEBUG Processing 356/646 atomic regions from SNP 106653 to 107253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,483 DEBUG Processing 20/236 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,511 DEBUG Processing 460/1130 atomic regions from SNP 137893 to 138493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,588 DEBUG Processing 593/855 atomic regions from SNP 177677 to 178277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,592 DEBUG Processing 482/1020 atomic regions from SNP 144322 to 144922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,594 DEBUG Processing 357/646 atomic regions from SNP 106953 to 107553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,601 DEBUG Processing 570/899 atomic regions from SNP 170734 to 171334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,718 DEBUG Processing 21/236 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,789 DEBUG Processing 461/1130 atomic regions from SNP 138193 to 138793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,836 DEBUG Processing 594/855 atomic regions from SNP 177977 to 178577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,841 DEBUG Processing 358/646 atomic regions from SNP 107253 to 107853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,864 DEBUG Processing 483/1020 atomic regions from SNP 144622 to 145222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,873 DEBUG Processing 571/899 atomic regions from SNP 171034 to 171634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,953 DEBUG Processing 22/236 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,070 DEBUG Processing 462/1130 atomic regions from SNP 138493 to 139093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,082 DEBUG Processing 595/855 atomic regions from SNP 178277 to 178877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,085 DEBUG Processing 359/646 atomic regions from SNP 107553 to 108153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,147 DEBUG Processing 572/899 atomic regions from SNP 171334 to 171934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,158 DEBUG Processing 484/1020 atomic regions from SNP 144922 to 145522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,187 DEBUG Processing 23/236 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,327 DEBUG Processing 596/855 atomic regions from SNP 178577 to 179177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,343 DEBUG Processing 360/646 atomic regions from SNP 107853 to 108453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,351 DEBUG Processing 463/1130 atomic regions from SNP 138793 to 139393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,418 DEBUG Processing 24/236 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,427 DEBUG Processing 573/899 atomic regions from SNP 171634 to 172234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,466 DEBUG Processing 485/1020 atomic regions from SNP 145222 to 145822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,573 DEBUG Processing 597/855 atomic regions from SNP 178877 to 179477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,605 DEBUG Processing 361/646 atomic regions from SNP 108153 to 108753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,635 DEBUG Processing 464/1130 atomic regions from SNP 139093 to 139693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,651 DEBUG Processing 25/236 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,691 DEBUG Processing 574/899 atomic regions from SNP 171934 to 172534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,772 DEBUG Processing 486/1020 atomic regions from SNP 145522 to 146122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,820 DEBUG Processing 598/855 atomic regions from SNP 179177 to 179777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,878 DEBUG Processing 362/646 atomic regions from SNP 108453 to 109053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,894 DEBUG Processing 26/236 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,928 DEBUG Processing 465/1130 atomic regions from SNP 139393 to 139993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,951 DEBUG Processing 575/899 atomic regions from SNP 172234 to 172834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,064 DEBUG Processing 487/1020 atomic regions from SNP 145822 to 146422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,070 DEBUG Processing 599/855 atomic regions from SNP 179477 to 180077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,142 DEBUG Processing 27/236 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,155 DEBUG Processing 363/646 atomic regions from SNP 108753 to 109353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,219 DEBUG Processing 466/1130 atomic regions from SNP 139693 to 140293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,232 DEBUG Processing 576/899 atomic regions from SNP 172534 to 173134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,334 DEBUG Processing 488/1020 atomic regions from SNP 146122 to 146722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,338 DEBUG Processing 600/855 atomic regions from SNP 179777 to 180377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,390 DEBUG Processing 28/236 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,433 DEBUG Processing 364/646 atomic regions from SNP 109053 to 109653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,510 DEBUG Processing 577/899 atomic regions from SNP 172834 to 173434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,527 DEBUG Processing 467/1130 atomic regions from SNP 139993 to 140593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,613 DEBUG Processing 489/1020 atomic regions from SNP 146422 to 147022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,616 DEBUG Processing 601/855 atomic regions from SNP 180077 to 180677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,648 DEBUG Processing 29/236 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,705 DEBUG Processing 365/646 atomic regions from SNP 109353 to 109953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,803 DEBUG Processing 578/899 atomic regions from SNP 173134 to 173734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,825 DEBUG Processing 468/1130 atomic regions from SNP 140293 to 140893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,880 DEBUG Processing 490/1020 atomic regions from SNP 146722 to 147322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,894 DEBUG Processing 30/236 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,896 DEBUG Processing 602/855 atomic regions from SNP 180377 to 180977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,978 DEBUG Processing 366/646 atomic regions from SNP 109653 to 110253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,084 DEBUG Processing 579/899 atomic regions from SNP 173434 to 174034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,098 DEBUG Processing 469/1130 atomic regions from SNP 140593 to 141193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,138 DEBUG Processing 31/236 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,149 DEBUG Processing 491/1020 atomic regions from SNP 147022 to 147622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,172 DEBUG Processing 603/855 atomic regions from SNP 180677 to 181277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,253 DEBUG Processing 367/646 atomic regions from SNP 109953 to 110553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,363 DEBUG Processing 580/899 atomic regions from SNP 173734 to 174334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,373 DEBUG Processing 470/1130 atomic regions from SNP 140893 to 141493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,377 DEBUG Processing 32/236 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,424 DEBUG Processing 492/1020 atomic regions from SNP 147322 to 147922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,444 DEBUG Processing 604/855 atomic regions from SNP 180977 to 181577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,541 DEBUG Processing 368/646 atomic regions from SNP 110253 to 110853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,621 DEBUG Processing 33/236 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,656 DEBUG Processing 581/899 atomic regions from SNP 174034 to 174634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,662 DEBUG Processing 471/1130 atomic regions from SNP 141193 to 141793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,702 DEBUG Processing 493/1020 atomic regions from SNP 147622 to 148222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,712 DEBUG Processing 605/855 atomic regions from SNP 181277 to 181877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,835 DEBUG Processing 369/646 atomic regions from SNP 110553 to 111153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,863 DEBUG Processing 34/236 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,924 DEBUG Processing 582/899 atomic regions from SNP 174334 to 174934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,955 DEBUG Processing 472/1130 atomic regions from SNP 141493 to 142093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,971 DEBUG Processing 606/855 atomic regions from SNP 181577 to 182177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,979 DEBUG Processing 494/1020 atomic regions from SNP 147922 to 148522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,103 DEBUG Processing 370/646 atomic regions from SNP 110853 to 111453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,108 DEBUG Processing 35/236 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,207 DEBUG Processing 583/899 atomic regions from SNP 174634 to 175234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,245 DEBUG Processing 473/1130 atomic regions from SNP 141793 to 142393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,247 DEBUG Processing 607/855 atomic regions from SNP 181877 to 182477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,256 DEBUG Processing 495/1020 atomic regions from SNP 148222 to 148822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,340 DEBUG Processing 36/236 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,348 DEBUG Processing 371/646 atomic regions from SNP 111153 to 111753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,494 DEBUG Processing 584/899 atomic regions from SNP 174934 to 175534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,517 DEBUG Processing 608/855 atomic regions from SNP 182177 to 182777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,527 DEBUG Processing 496/1020 atomic regions from SNP 148522 to 149122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,530 DEBUG Processing 474/1130 atomic regions from SNP 142093 to 142693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,578 DEBUG Processing 37/236 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,588 DEBUG Processing 372/646 atomic regions from SNP 111453 to 112053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,768 DEBUG Processing 609/855 atomic regions from SNP 182477 to 183077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,783 DEBUG Processing 585/899 atomic regions from SNP 175234 to 175834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,804 DEBUG Processing 497/1020 atomic regions from SNP 148822 to 149422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,819 DEBUG Processing 475/1130 atomic regions from SNP 142393 to 142993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,825 DEBUG Processing 38/236 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,839 DEBUG Processing 373/646 atomic regions from SNP 111753 to 112353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,016 DEBUG Processing 610/855 atomic regions from SNP 182777 to 183377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,070 DEBUG Processing 586/899 atomic regions from SNP 175534 to 176134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,073 DEBUG Processing 39/236 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,081 DEBUG Processing 498/1020 atomic regions from SNP 149122 to 149722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,099 DEBUG Processing 374/646 atomic regions from SNP 112053 to 112653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,108 DEBUG Processing 476/1130 atomic regions from SNP 142693 to 143293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,262 DEBUG Processing 611/855 atomic regions from SNP 183077 to 183677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,313 DEBUG Processing 40/236 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,332 DEBUG Processing 587/899 atomic regions from SNP 175834 to 176434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,363 DEBUG Processing 499/1020 atomic regions from SNP 149422 to 150022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,369 DEBUG Processing 375/646 atomic regions from SNP 112353 to 112953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,395 DEBUG Processing 477/1130 atomic regions from SNP 142993 to 143593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,515 DEBUG Processing 612/855 atomic regions from SNP 183377 to 183977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,560 DEBUG Processing 41/236 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,590 DEBUG Processing 588/899 atomic regions from SNP 176134 to 176734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,631 DEBUG Processing 376/646 atomic regions from SNP 112653 to 113253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,644 DEBUG Processing 500/1020 atomic regions from SNP 149722 to 150322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,674 DEBUG Processing 478/1130 atomic regions from SNP 143293 to 143893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,782 DEBUG Processing 613/855 atomic regions from SNP 183677 to 184277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,806 DEBUG Processing 42/236 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,845 DEBUG Processing 589/899 atomic regions from SNP 176434 to 177034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,894 DEBUG Processing 377/646 atomic regions from SNP 112953 to 113553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,923 DEBUG Processing 501/1020 atomic regions from SNP 150022 to 150622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,971 DEBUG Processing 479/1130 atomic regions from SNP 143593 to 144193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,054 DEBUG Processing 43/236 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,062 DEBUG Processing 614/855 atomic regions from SNP 183977 to 184577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,102 DEBUG Processing 590/899 atomic regions from SNP 176734 to 177334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,169 DEBUG Processing 378/646 atomic regions from SNP 113253 to 113853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,206 DEBUG Processing 502/1020 atomic regions from SNP 150322 to 150922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,275 DEBUG Processing 480/1130 atomic regions from SNP 143893 to 144493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,306 DEBUG Processing 44/236 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,336 DEBUG Processing 615/855 atomic regions from SNP 184277 to 184877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,365 DEBUG Processing 591/899 atomic regions from SNP 177034 to 177634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,440 DEBUG Processing 379/646 atomic regions from SNP 113553 to 114153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,485 DEBUG Processing 503/1020 atomic regions from SNP 150622 to 151222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,550 DEBUG Processing 45/236 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,582 DEBUG Processing 481/1130 atomic regions from SNP 144193 to 144793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,590 DEBUG Processing 616/855 atomic regions from SNP 184577 to 185177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,627 DEBUG Processing 592/899 atomic regions from SNP 177334 to 177934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,709 DEBUG Processing 380/646 atomic regions from SNP 113853 to 114453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,768 DEBUG Processing 504/1020 atomic regions from SNP 150922 to 151522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,793 DEBUG Processing 46/236 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,840 DEBUG Processing 617/855 atomic regions from SNP 184877 to 185477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,874 DEBUG Processing 482/1130 atomic regions from SNP 144493 to 145093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,893 DEBUG Processing 593/899 atomic regions from SNP 177634 to 178234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,955 DEBUG Processing 381/646 atomic regions from SNP 114153 to 114753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,034 DEBUG Processing 47/236 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,061 DEBUG Processing 505/1020 atomic regions from SNP 151222 to 151822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,089 DEBUG Processing 618/855 atomic regions from SNP 185177 to 185777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,176 DEBUG Processing 483/1130 atomic regions from SNP 144793 to 145393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,189 DEBUG Processing 594/899 atomic regions from SNP 177934 to 178534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,196 DEBUG Processing 382/646 atomic regions from SNP 114453 to 115053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,289 DEBUG Processing 48/236 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,334 DEBUG Processing 619/855 atomic regions from SNP 185477 to 186077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,348 DEBUG Processing 506/1020 atomic regions from SNP 151522 to 152122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,431 DEBUG Processing 383/646 atomic regions from SNP 114753 to 115353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,463 DEBUG Processing 595/899 atomic regions from SNP 178234 to 178834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,484 DEBUG Processing 484/1130 atomic regions from SNP 145093 to 145693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,552 DEBUG Processing 49/236 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,581 DEBUG Processing 620/855 atomic regions from SNP 185777 to 186377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,634 DEBUG Processing 507/1020 atomic regions from SNP 151822 to 152422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,680 DEBUG Processing 384/646 atomic regions from SNP 115053 to 115653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,745 DEBUG Processing 596/899 atomic regions from SNP 178534 to 179134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,799 DEBUG Processing 50/236 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,809 DEBUG Processing 485/1130 atomic regions from SNP 145393 to 145993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,835 DEBUG Processing 621/855 atomic regions from SNP 186077 to 186677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,919 DEBUG Processing 508/1020 atomic regions from SNP 152122 to 152722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,931 DEBUG Processing 385/646 atomic regions from SNP 115353 to 115953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,025 DEBUG Processing 597/899 atomic regions from SNP 178834 to 179434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,047 DEBUG Processing 51/236 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,088 DEBUG Processing 622/855 atomic regions from SNP 186377 to 186977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,135 DEBUG Processing 486/1130 atomic regions from SNP 145693 to 146293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,185 DEBUG Processing 386/646 atomic regions from SNP 115653 to 116253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,201 DEBUG Processing 509/1020 atomic regions from SNP 152422 to 153022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,283 DEBUG Processing 52/236 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,311 DEBUG Processing 598/899 atomic regions from SNP 179134 to 179734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,359 DEBUG Processing 623/855 atomic regions from SNP 186677 to 187277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,437 DEBUG Processing 387/646 atomic regions from SNP 115953 to 116553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,450 DEBUG Processing 487/1130 atomic regions from SNP 145993 to 146593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,484 DEBUG Processing 510/1020 atomic regions from SNP 152722 to 153322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,523 DEBUG Processing 53/236 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,596 DEBUG Processing 599/899 atomic regions from SNP 179434 to 180034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,632 DEBUG Processing 624/855 atomic regions from SNP 186977 to 187577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,683 DEBUG Processing 388/646 atomic regions from SNP 116253 to 116853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,751 DEBUG Processing 488/1130 atomic regions from SNP 146293 to 146893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,760 DEBUG Processing 54/236 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,771 DEBUG Processing 511/1020 atomic regions from SNP 153022 to 153622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,878 DEBUG Processing 600/899 atomic regions from SNP 179734 to 180334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,906 DEBUG Processing 625/855 atomic regions from SNP 187277 to 187877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,918 DEBUG Processing 389/646 atomic regions from SNP 116553 to 117153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,998 DEBUG Processing 55/236 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,046 DEBUG Processing 489/1130 atomic regions from SNP 146593 to 147193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,046 DEBUG Processing 512/1020 atomic regions from SNP 153322 to 153922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,159 DEBUG Processing 390/646 atomic regions from SNP 116853 to 117453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,162 DEBUG Processing 601/899 atomic regions from SNP 180034 to 180634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,183 DEBUG Processing 626/855 atomic regions from SNP 187577 to 188177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,243 DEBUG Processing 56/236 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,312 DEBUG Processing 513/1020 atomic regions from SNP 153622 to 154222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,361 DEBUG Processing 490/1130 atomic regions from SNP 146893 to 147493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,399 DEBUG Processing 391/646 atomic regions from SNP 117153 to 117753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,445 DEBUG Processing 602/899 atomic regions from SNP 180334 to 180934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,457 DEBUG Processing 627/855 atomic regions from SNP 187877 to 188477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,478 DEBUG Processing 57/236 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,579 DEBUG Processing 514/1020 atomic regions from SNP 153922 to 154522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,643 DEBUG Processing 392/646 atomic regions from SNP 117453 to 118053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,669 DEBUG Processing 491/1130 atomic regions from SNP 147193 to 147793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,710 DEBUG Processing 58/236 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,725 DEBUG Processing 603/899 atomic regions from SNP 180634 to 181234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,728 DEBUG Processing 628/855 atomic regions from SNP 188177 to 188777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,853 DEBUG Processing 515/1020 atomic regions from SNP 154222 to 154822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,889 DEBUG Processing 393/646 atomic regions from SNP 117753 to 118353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,948 DEBUG Processing 59/236 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,961 DEBUG Processing 492/1130 atomic regions from SNP 147493 to 148093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,007 DEBUG Processing 604/899 atomic regions from SNP 180934 to 181534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,011 DEBUG Processing 629/855 atomic regions from SNP 188477 to 189077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,139 DEBUG Processing 394/646 atomic regions from SNP 118053 to 118653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,146 DEBUG Processing 516/1020 atomic regions from SNP 154522 to 155122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,189 DEBUG Processing 60/236 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,269 DEBUG Processing 493/1130 atomic regions from SNP 147793 to 148393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,278 DEBUG Processing 605/899 atomic regions from SNP 181234 to 181834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,288 DEBUG Processing 630/855 atomic regions from SNP 188777 to 189377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,393 DEBUG Processing 395/646 atomic regions from SNP 118353 to 118953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,436 DEBUG Processing 517/1020 atomic regions from SNP 154822 to 155422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,458 DEBUG Processing 61/236 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,534 DEBUG Processing 606/899 atomic regions from SNP 181534 to 182134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,570 DEBUG Processing 631/855 atomic regions from SNP 189077 to 189677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,593 DEBUG Processing 494/1130 atomic regions from SNP 148093 to 148693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,652 DEBUG Processing 396/646 atomic regions from SNP 118653 to 119253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,708 DEBUG Processing 62/236 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,750 DEBUG Processing 518/1020 atomic regions from SNP 155122 to 155722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,792 DEBUG Processing 607/899 atomic regions from SNP 181834 to 182434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,855 DEBUG Processing 632/855 atomic regions from SNP 189377 to 189977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,892 DEBUG Processing 397/646 atomic regions from SNP 118953 to 119553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,898 DEBUG Processing 495/1130 atomic regions from SNP 148393 to 148993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,947 DEBUG Processing 63/236 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,049 DEBUG Processing 608/899 atomic regions from SNP 182134 to 182734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,051 DEBUG Processing 519/1020 atomic regions from SNP 155422 to 156022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,134 DEBUG Processing 398/646 atomic regions from SNP 119253 to 119853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,140 DEBUG Processing 633/855 atomic regions from SNP 189677 to 190277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,182 DEBUG Processing 64/236 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,190 DEBUG Processing 496/1130 atomic regions from SNP 148693 to 149293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,302 DEBUG Processing 609/899 atomic regions from SNP 182434 to 183034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,349 DEBUG Processing 520/1020 atomic regions from SNP 155722 to 156322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,376 DEBUG Processing 399/646 atomic regions from SNP 119553 to 120153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,420 DEBUG Processing 65/236 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,425 DEBUG Processing 634/855 atomic regions from SNP 189977 to 190577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,503 DEBUG Processing 497/1130 atomic regions from SNP 148993 to 149593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,558 DEBUG Processing 610/899 atomic regions from SNP 182734 to 183334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,619 DEBUG Processing 400/646 atomic regions from SNP 119853 to 120453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,632 DEBUG Processing 521/1020 atomic regions from SNP 156022 to 156622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,657 DEBUG Processing 66/236 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,708 DEBUG Processing 635/855 atomic regions from SNP 190277 to 190877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,810 DEBUG Processing 498/1130 atomic regions from SNP 149293 to 149893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,810 DEBUG Processing 611/899 atomic regions from SNP 183034 to 183634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,862 DEBUG Processing 401/646 atomic regions from SNP 120153 to 120753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,891 DEBUG Processing 67/236 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,910 DEBUG Processing 522/1020 atomic regions from SNP 156322 to 156922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,963 DEBUG Processing 636/855 atomic regions from SNP 190577 to 191177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,066 DEBUG Processing 612/899 atomic regions from SNP 183334 to 183934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,109 DEBUG Processing 402/646 atomic regions from SNP 120453 to 121053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,115 DEBUG Processing 499/1130 atomic regions from SNP 149593 to 150193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,127 DEBUG Processing 68/236 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,210 DEBUG Processing 523/1020 atomic regions from SNP 156622 to 157222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,229 DEBUG Processing 637/855 atomic regions from SNP 190877 to 191477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,330 DEBUG Processing 613/899 atomic regions from SNP 183634 to 184234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,356 DEBUG Processing 403/646 atomic regions from SNP 120753 to 121353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,373 DEBUG Processing 69/236 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,407 DEBUG Processing 500/1130 atomic regions from SNP 149893 to 150493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,497 DEBUG Processing 524/1020 atomic regions from SNP 156922 to 157522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,499 DEBUG Processing 638/855 atomic regions from SNP 191177 to 191777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,588 DEBUG Processing 614/899 atomic regions from SNP 183934 to 184534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,598 DEBUG Processing 404/646 atomic regions from SNP 121053 to 121653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,616 DEBUG Processing 70/236 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,690 DEBUG Processing 501/1130 atomic regions from SNP 150193 to 150793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,747 DEBUG Processing 639/855 atomic regions from SNP 191477 to 192077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,804 DEBUG Processing 525/1020 atomic regions from SNP 157222 to 157822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,850 DEBUG Processing 405/646 atomic regions from SNP 121353 to 121953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,852 DEBUG Processing 615/899 atomic regions from SNP 184234 to 184834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,864 DEBUG Processing 71/236 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,977 DEBUG Processing 502/1130 atomic regions from SNP 150493 to 151093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,996 DEBUG Processing 640/855 atomic regions from SNP 191777 to 192377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,092 DEBUG Processing 526/1020 atomic regions from SNP 157522 to 158122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,102 DEBUG Processing 406/646 atomic regions from SNP 121653 to 122253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,109 DEBUG Processing 72/236 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,112 DEBUG Processing 616/899 atomic regions from SNP 184534 to 185134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,241 DEBUG Processing 641/855 atomic regions from SNP 192077 to 192677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,257 DEBUG Processing 503/1130 atomic regions from SNP 150793 to 151393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,350 DEBUG Processing 407/646 atomic regions from SNP 121953 to 122553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,353 DEBUG Processing 73/236 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,376 DEBUG Processing 617/899 atomic regions from SNP 184834 to 185434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,391 DEBUG Processing 527/1020 atomic regions from SNP 157822 to 158422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,483 DEBUG Processing 642/855 atomic regions from SNP 192377 to 192977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,538 DEBUG Processing 504/1130 atomic regions from SNP 151093 to 151693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,601 DEBUG Processing 74/236 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,609 DEBUG Processing 408/646 atomic regions from SNP 122253 to 122853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,641 DEBUG Processing 618/899 atomic regions from SNP 185134 to 185734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,691 DEBUG Processing 528/1020 atomic regions from SNP 158122 to 158722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,725 DEBUG Processing 643/855 atomic regions from SNP 192677 to 193277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,817 DEBUG Processing 505/1130 atomic regions from SNP 151393 to 151993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,853 DEBUG Processing 75/236 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,891 DEBUG Processing 409/646 atomic regions from SNP 122553 to 123153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,913 DEBUG Processing 619/899 atomic regions from SNP 185434 to 186034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,973 DEBUG Processing 529/1020 atomic regions from SNP 158422 to 159022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,996 DEBUG Processing 644/855 atomic regions from SNP 192977 to 193577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,089 DEBUG Processing 76/236 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,105 DEBUG Processing 506/1130 atomic regions from SNP 151693 to 152293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,135 DEBUG Processing 410/646 atomic regions from SNP 122853 to 123453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,172 DEBUG Processing 620/899 atomic regions from SNP 185734 to 186334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,246 DEBUG Processing 530/1020 atomic regions from SNP 158722 to 159322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,277 DEBUG Processing 645/855 atomic regions from SNP 193277 to 193877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,327 DEBUG Processing 77/236 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,383 DEBUG Processing 411/646 atomic regions from SNP 123153 to 123753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,386 DEBUG Processing 507/1130 atomic regions from SNP 151993 to 152593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,427 DEBUG Processing 621/899 atomic regions from SNP 186034 to 186634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,520 DEBUG Processing 531/1020 atomic regions from SNP 159022 to 159622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,552 DEBUG Processing 646/855 atomic regions from SNP 193577 to 194177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,556 DEBUG Processing 78/236 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,638 DEBUG Processing 412/646 atomic regions from SNP 123453 to 124053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,666 DEBUG Processing 508/1130 atomic regions from SNP 152293 to 152893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,679 DEBUG Processing 622/899 atomic regions from SNP 186334 to 186934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,799 DEBUG Processing 532/1020 atomic regions from SNP 159322 to 159922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,799 DEBUG Processing 79/236 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,801 DEBUG Processing 647/855 atomic regions from SNP 193877 to 194477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,910 DEBUG Processing 413/646 atomic regions from SNP 123753 to 124353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,932 DEBUG Processing 623/899 atomic regions from SNP 186634 to 187234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,973 DEBUG Processing 509/1130 atomic regions from SNP 152593 to 153193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,046 DEBUG Processing 80/236 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,054 DEBUG Processing 648/855 atomic regions from SNP 194177 to 194777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,080 DEBUG Processing 533/1020 atomic regions from SNP 159622 to 160222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,178 DEBUG Processing 414/646 atomic regions from SNP 124053 to 124653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,181 DEBUG Processing 624/899 atomic regions from SNP 186934 to 187534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,291 DEBUG Processing 510/1130 atomic regions from SNP 152893 to 153493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,309 DEBUG Processing 649/855 atomic regions from SNP 194477 to 195077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,313 DEBUG Processing 81/236 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,365 DEBUG Processing 534/1020 atomic regions from SNP 159922 to 160522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,435 DEBUG Processing 625/899 atomic regions from SNP 187234 to 187834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,442 DEBUG Processing 415/646 atomic regions from SNP 124353 to 124953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,577 DEBUG Processing 650/855 atomic regions from SNP 194777 to 195377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,579 DEBUG Processing 82/236 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,601 DEBUG Processing 511/1130 atomic regions from SNP 153193 to 153793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,642 DEBUG Processing 535/1020 atomic regions from SNP 160222 to 160822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,690 DEBUG Processing 626/899 atomic regions from SNP 187534 to 188134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,691 DEBUG Processing 416/646 atomic regions from SNP 124653 to 125253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,826 DEBUG Processing 83/236 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,843 DEBUG Processing 651/855 atomic regions from SNP 195077 to 195677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,906 DEBUG Processing 512/1130 atomic regions from SNP 153493 to 154093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,925 DEBUG Processing 536/1020 atomic regions from SNP 160522 to 161122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,944 DEBUG Processing 627/899 atomic regions from SNP 187834 to 188434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,964 DEBUG Processing 417/646 atomic regions from SNP 124953 to 125553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,080 DEBUG Processing 84/236 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,107 DEBUG Processing 652/855 atomic regions from SNP 195377 to 195977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,191 DEBUG Processing 513/1130 atomic regions from SNP 153793 to 154393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,197 DEBUG Processing 628/899 atomic regions from SNP 188134 to 188734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,213 DEBUG Processing 537/1020 atomic regions from SNP 160822 to 161422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,251 DEBUG Processing 418/646 atomic regions from SNP 125253 to 125853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,326 DEBUG Processing 85/236 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,385 DEBUG Processing 653/855 atomic regions from SNP 195677 to 196277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,456 DEBUG Processing 629/899 atomic regions from SNP 188434 to 189034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,476 DEBUG Processing 514/1130 atomic regions from SNP 154093 to 154693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,495 DEBUG Processing 538/1020 atomic regions from SNP 161122 to 161722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,531 DEBUG Processing 419/646 atomic regions from SNP 125553 to 126153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,570 DEBUG Processing 86/236 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,647 DEBUG Processing 654/855 atomic regions from SNP 195977 to 196577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,711 DEBUG Processing 630/899 atomic regions from SNP 188734 to 189334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,767 DEBUG Processing 515/1130 atomic regions from SNP 154393 to 154993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,773 DEBUG Processing 539/1020 atomic regions from SNP 161422 to 162022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,807 DEBUG Processing 420/646 atomic regions from SNP 125853 to 126453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,817 DEBUG Processing 87/236 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,898 DEBUG Processing 655/855 atomic regions from SNP 196277 to 196877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,967 DEBUG Processing 631/899 atomic regions from SNP 189034 to 189634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,048 DEBUG Processing 540/1020 atomic regions from SNP 161722 to 162322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,071 DEBUG Processing 88/236 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,086 DEBUG Processing 516/1130 atomic regions from SNP 154693 to 155293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,093 DEBUG Processing 421/646 atomic regions from SNP 126153 to 126753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,149 DEBUG Processing 656/855 atomic regions from SNP 196577 to 197177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,213 DEBUG Processing 632/899 atomic regions from SNP 189334 to 189934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,313 DEBUG Processing 541/1020 atomic regions from SNP 162022 to 162622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,320 DEBUG Processing 89/236 atomic regions from SNP 26488 to 27088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,393 DEBUG Processing 422/646 atomic regions from SNP 126453 to 127053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,403 DEBUG Processing 657/855 atomic regions from SNP 196877 to 197477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,417 DEBUG Processing 517/1130 atomic regions from SNP 154993 to 155593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,457 DEBUG Processing 633/899 atomic regions from SNP 189634 to 190234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,551 DEBUG Processing 90/236 atomic regions from SNP 26788 to 27388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,576 DEBUG Processing 542/1020 atomic regions from SNP 162322 to 162922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,663 DEBUG Processing 658/855 atomic regions from SNP 197177 to 197777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,674 DEBUG Processing 423/646 atomic regions from SNP 126753 to 127353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,711 DEBUG Processing 634/899 atomic regions from SNP 189934 to 190534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,740 DEBUG Processing 518/1130 atomic regions from SNP 155293 to 155893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,778 DEBUG Processing 91/236 atomic regions from SNP 27088 to 27688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,836 DEBUG Processing 543/1020 atomic regions from SNP 162622 to 163222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,919 DEBUG Processing 659/855 atomic regions from SNP 197477 to 198077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,940 DEBUG Processing 424/646 atomic regions from SNP 127053 to 127653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,972 DEBUG Processing 635/899 atomic regions from SNP 190234 to 190834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,014 DEBUG Processing 92/236 atomic regions from SNP 27388 to 27988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,039 DEBUG Processing 519/1130 atomic regions from SNP 155593 to 156193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,105 DEBUG Processing 544/1020 atomic regions from SNP 162922 to 163522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,173 DEBUG Processing 660/855 atomic regions from SNP 197777 to 198377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,229 DEBUG Processing 425/646 atomic regions from SNP 127353 to 127953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,236 DEBUG Processing 636/899 atomic regions from SNP 190534 to 191134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,268 DEBUG Processing 93/236 atomic regions from SNP 27688 to 28288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,343 DEBUG Processing 520/1130 atomic regions from SNP 155893 to 156493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,369 DEBUG Processing 545/1020 atomic regions from SNP 163222 to 163822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,420 DEBUG Processing 661/855 atomic regions from SNP 198077 to 198677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,497 DEBUG Processing 637/899 atomic regions from SNP 190834 to 191434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,506 DEBUG Processing 426/646 atomic regions from SNP 127653 to 128253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,533 DEBUG Processing 94/236 atomic regions from SNP 27988 to 28588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,636 DEBUG Processing 546/1020 atomic regions from SNP 163522 to 164122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,642 DEBUG Processing 521/1130 atomic regions from SNP 156193 to 156793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,662 DEBUG Processing 662/855 atomic regions from SNP 198377 to 198977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,766 DEBUG Processing 638/899 atomic regions from SNP 191134 to 191734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,785 DEBUG Processing 427/646 atomic regions from SNP 127953 to 128553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,788 DEBUG Processing 95/236 atomic regions from SNP 28288 to 28888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,904 DEBUG Processing 547/1020 atomic regions from SNP 163822 to 164422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,915 DEBUG Processing 663/855 atomic regions from SNP 198677 to 199277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,948 DEBUG Processing 522/1130 atomic regions from SNP 156493 to 157093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,023 DEBUG Processing 639/899 atomic regions from SNP 191434 to 192034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,029 DEBUG Processing 96/236 atomic regions from SNP 28588 to 29188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,055 DEBUG Processing 428/646 atomic regions from SNP 128253 to 128853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,174 DEBUG Processing 548/1020 atomic regions from SNP 164122 to 164722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,184 DEBUG Processing 664/855 atomic regions from SNP 198977 to 199577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,238 DEBUG Processing 523/1130 atomic regions from SNP 156793 to 157393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,263 DEBUG Processing 97/236 atomic regions from SNP 28888 to 29488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,272 DEBUG Processing 640/899 atomic regions from SNP 191734 to 192334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,326 DEBUG Processing 429/646 atomic regions from SNP 128553 to 129153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,447 DEBUG Processing 549/1020 atomic regions from SNP 164422 to 165022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,451 DEBUG Processing 665/855 atomic regions from SNP 199277 to 199877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,494 DEBUG Processing 98/236 atomic regions from SNP 29188 to 29788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,527 DEBUG Processing 524/1130 atomic regions from SNP 157093 to 157693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,528 DEBUG Processing 641/899 atomic regions from SNP 192034 to 192634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,574 DEBUG Processing 430/646 atomic regions from SNP 128853 to 129453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,722 DEBUG Processing 550/1020 atomic regions from SNP 164722 to 165322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,732 DEBUG Processing 666/855 atomic regions from SNP 199577 to 200177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,735 DEBUG Processing 99/236 atomic regions from SNP 29488 to 30088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,797 DEBUG Processing 642/899 atomic regions from SNP 192334 to 192934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,815 DEBUG Processing 431/646 atomic regions from SNP 129153 to 129753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,831 DEBUG Processing 525/1130 atomic regions from SNP 157393 to 157993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,979 DEBUG Processing 100/236 atomic regions from SNP 29788 to 30388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,002 DEBUG Processing 551/1020 atomic regions from SNP 165022 to 165622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,017 DEBUG Processing 667/855 atomic regions from SNP 199877 to 200477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,073 DEBUG Processing 643/899 atomic regions from SNP 192634 to 193234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,078 DEBUG Processing 432/646 atomic regions from SNP 129453 to 130053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,139 DEBUG Processing 526/1130 atomic regions from SNP 157693 to 158293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,220 DEBUG Processing 101/236 atomic regions from SNP 30088 to 30688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,286 DEBUG Processing 552/1020 atomic regions from SNP 165322 to 165922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,301 DEBUG Processing 668/855 atomic regions from SNP 200177 to 200777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,346 DEBUG Processing 644/899 atomic regions from SNP 192934 to 193534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,363 DEBUG Processing 433/646 atomic regions from SNP 129753 to 130353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,455 DEBUG Processing 527/1130 atomic regions from SNP 157993 to 158593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,458 DEBUG Processing 102/236 atomic regions from SNP 30388 to 30988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,564 DEBUG Processing 553/1020 atomic regions from SNP 165622 to 166222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,573 DEBUG Processing 669/855 atomic regions from SNP 200477 to 201077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,618 DEBUG Processing 645/899 atomic regions from SNP 193234 to 193834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,638 DEBUG Processing 434/646 atomic regions from SNP 130053 to 130653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,690 DEBUG Processing 103/236 atomic regions from SNP 30688 to 31288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,761 DEBUG Processing 528/1130 atomic regions from SNP 158293 to 158893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,847 DEBUG Processing 554/1020 atomic regions from SNP 165922 to 166522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,848 DEBUG Processing 670/855 atomic regions from SNP 200777 to 201377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,908 DEBUG Processing 435/646 atomic regions from SNP 130353 to 130953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,915 DEBUG Processing 646/899 atomic regions from SNP 193534 to 194134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,931 DEBUG Processing 104/236 atomic regions from SNP 30988 to 31588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,072 DEBUG Processing 529/1130 atomic regions from SNP 158593 to 159193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,124 DEBUG Processing 555/1020 atomic regions from SNP 166222 to 166822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,137 DEBUG Processing 671/855 atomic regions from SNP 201077 to 201677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,162 DEBUG Processing 436/646 atomic regions from SNP 130653 to 131253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,173 DEBUG Processing 105/236 atomic regions from SNP 31288 to 31888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,206 DEBUG Processing 647/899 atomic regions from SNP 193834 to 194434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,374 DEBUG Processing 530/1130 atomic regions from SNP 158893 to 159493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,410 DEBUG Processing 556/1020 atomic regions from SNP 166522 to 167122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,413 DEBUG Processing 106/236 atomic regions from SNP 31588 to 32188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,417 DEBUG Processing 437/646 atomic regions from SNP 130953 to 131553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,420 DEBUG Processing 672/855 atomic regions from SNP 201377 to 201977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,486 DEBUG Processing 648/899 atomic regions from SNP 194134 to 194734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,648 DEBUG Processing 107/236 atomic regions from SNP 31888 to 32488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,674 DEBUG Processing 438/646 atomic regions from SNP 131253 to 131853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,682 DEBUG Processing 531/1130 atomic regions from SNP 159193 to 159793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,694 DEBUG Processing 557/1020 atomic regions from SNP 166822 to 167422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,698 DEBUG Processing 673/855 atomic regions from SNP 201677 to 202277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,752 DEBUG Processing 649/899 atomic regions from SNP 194434 to 195034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,880 DEBUG Processing 108/236 atomic regions from SNP 32188 to 32788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,943 DEBUG Processing 439/646 atomic regions from SNP 131553 to 132153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,976 DEBUG Processing 674/855 atomic regions from SNP 201977 to 202577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,978 DEBUG Processing 558/1020 atomic regions from SNP 167122 to 167722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,996 DEBUG Processing 532/1130 atomic regions from SNP 159493 to 160093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,005 DEBUG Processing 650/899 atomic regions from SNP 194734 to 195334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,101 DEBUG Processing 109/236 atomic regions from SNP 32488 to 33088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,207 DEBUG Processing 440/646 atomic regions from SNP 131853 to 132453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,241 DEBUG Processing 675/855 atomic regions from SNP 202277 to 202877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,250 DEBUG Processing 651/899 atomic regions from SNP 195034 to 195634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,252 DEBUG Processing 559/1020 atomic regions from SNP 167422 to 168022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,284 DEBUG Processing 533/1130 atomic regions from SNP 159793 to 160393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,337 DEBUG Processing 110/236 atomic regions from SNP 32788 to 33388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,461 DEBUG Processing 441/646 atomic regions from SNP 132153 to 132753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,490 DEBUG Processing 652/899 atomic regions from SNP 195334 to 195934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,510 DEBUG Processing 676/855 atomic regions from SNP 202577 to 203177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,525 DEBUG Processing 560/1020 atomic regions from SNP 167722 to 168322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,559 DEBUG Processing 534/1130 atomic regions from SNP 160093 to 160693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,581 DEBUG Processing 111/236 atomic regions from SNP 33088 to 33688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,725 DEBUG Processing 653/899 atomic regions from SNP 195634 to 196234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,734 DEBUG Processing 442/646 atomic regions from SNP 132453 to 133053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,779 DEBUG Processing 677/855 atomic regions from SNP 202877 to 203477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,801 DEBUG Processing 561/1020 atomic regions from SNP 168022 to 168622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,817 DEBUG Processing 112/236 atomic regions from SNP 33388 to 33988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,832 DEBUG Processing 535/1130 atomic regions from SNP 160393 to 160993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,968 DEBUG Processing 654/899 atomic regions from SNP 195934 to 196534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,031 DEBUG Processing 443/646 atomic regions from SNP 132753 to 133353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,050 DEBUG Processing 113/236 atomic regions from SNP 33688 to 34288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,051 DEBUG Processing 678/855 atomic regions from SNP 203177 to 203777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,095 DEBUG Processing 562/1020 atomic regions from SNP 168322 to 168922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,110 DEBUG Processing 536/1130 atomic regions from SNP 160693 to 161293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,210 DEBUG Processing 655/899 atomic regions from SNP 196234 to 196834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,272 DEBUG Processing 114/236 atomic regions from SNP 33988 to 34588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,304 DEBUG Processing 444/646 atomic regions from SNP 133053 to 133653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,314 DEBUG Processing 679/855 atomic regions from SNP 203477 to 204077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,374 DEBUG Processing 563/1020 atomic regions from SNP 168622 to 169222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,382 DEBUG Processing 537/1130 atomic regions from SNP 160993 to 161593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,460 DEBUG Processing 656/899 atomic regions from SNP 196534 to 197134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,499 DEBUG Processing 115/236 atomic regions from SNP 34288 to 34888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,561 DEBUG Processing 445/646 atomic regions from SNP 133353 to 133953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,580 DEBUG Processing 680/855 atomic regions from SNP 203777 to 204377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,651 DEBUG Processing 564/1020 atomic regions from SNP 168922 to 169522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,651 DEBUG Processing 538/1130 atomic regions from SNP 161293 to 161893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,710 DEBUG Processing 657/899 atomic regions from SNP 196834 to 197434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,734 DEBUG Processing 116/236 atomic regions from SNP 34588 to 35188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,805 DEBUG Processing 446/646 atomic regions from SNP 133653 to 134253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,842 DEBUG Processing 681/855 atomic regions from SNP 204077 to 204677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,922 DEBUG Processing 539/1130 atomic regions from SNP 161593 to 162193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,930 DEBUG Processing 565/1020 atomic regions from SNP 169222 to 169822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,959 DEBUG Processing 658/899 atomic regions from SNP 197134 to 197734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,972 DEBUG Processing 117/236 atomic regions from SNP 34888 to 35488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,043 DEBUG Processing 447/646 atomic regions from SNP 133953 to 134553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,114 DEBUG Processing 682/855 atomic regions from SNP 204377 to 204977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,192 DEBUG Processing 540/1130 atomic regions from SNP 161893 to 162493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,201 DEBUG Processing 118/236 atomic regions from SNP 35188 to 35788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,202 DEBUG Processing 659/899 atomic regions from SNP 197434 to 198034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,202 DEBUG Processing 566/1020 atomic regions from SNP 169522 to 170122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,283 DEBUG Processing 448/646 atomic regions from SNP 134253 to 134853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,384 DEBUG Processing 683/855 atomic regions from SNP 204677 to 205277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,426 DEBUG Processing 119/236 atomic regions from SNP 35488 to 36088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,439 DEBUG Processing 660/899 atomic regions from SNP 197734 to 198334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,459 DEBUG Processing 541/1130 atomic regions from SNP 162193 to 162793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,476 DEBUG Processing 567/1020 atomic regions from SNP 169822 to 170422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,519 DEBUG Processing 449/646 atomic regions from SNP 134553 to 135153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,652 DEBUG Processing 684/855 atomic regions from SNP 204977 to 205577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,654 DEBUG Processing 120/236 atomic regions from SNP 35788 to 36388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,682 DEBUG Processing 661/899 atomic regions from SNP 198034 to 198634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,727 DEBUG Processing 542/1130 atomic regions from SNP 162493 to 163093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,751 DEBUG Processing 568/1020 atomic regions from SNP 170122 to 170722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,758 DEBUG Processing 450/646 atomic regions from SNP 134853 to 135453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,883 DEBUG Processing 121/236 atomic regions from SNP 36088 to 36688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,911 DEBUG Processing 685/855 atomic regions from SNP 205277 to 205877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,924 DEBUG Processing 662/899 atomic regions from SNP 198334 to 198934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,998 DEBUG Processing 543/1130 atomic regions from SNP 162793 to 163393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,011 DEBUG Processing 451/646 atomic regions from SNP 135153 to 135753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,026 DEBUG Processing 569/1020 atomic regions from SNP 170422 to 171022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,112 DEBUG Processing 122/236 atomic regions from SNP 36388 to 36988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,164 DEBUG Processing 686/855 atomic regions from SNP 205577 to 206177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,170 DEBUG Processing 663/899 atomic regions from SNP 198634 to 199234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,264 DEBUG Processing 544/1130 atomic regions from SNP 163093 to 163693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,278 DEBUG Processing 452/646 atomic regions from SNP 135453 to 136053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,298 DEBUG Processing 570/1020 atomic regions from SNP 170722 to 171322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,342 DEBUG Processing 123/236 atomic regions from SNP 36688 to 37288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,414 DEBUG Processing 664/899 atomic regions from SNP 198934 to 199534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,420 DEBUG Processing 687/855 atomic regions from SNP 205877 to 206477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,537 DEBUG Processing 545/1130 atomic regions from SNP 163393 to 163993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,543 DEBUG Processing 453/646 atomic regions from SNP 135753 to 136353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,576 DEBUG Processing 124/236 atomic regions from SNP 36988 to 37588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,579 DEBUG Processing 571/1020 atomic regions from SNP 171022 to 171622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,659 DEBUG Processing 665/899 atomic regions from SNP 199234 to 199834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,694 DEBUG Processing 688/855 atomic regions from SNP 206177 to 206777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,807 DEBUG Processing 454/646 atomic regions from SNP 136053 to 136653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,814 DEBUG Processing 546/1130 atomic regions from SNP 163693 to 164293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,833 DEBUG Processing 125/236 atomic regions from SNP 37288 to 37888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,865 DEBUG Processing 572/1020 atomic regions from SNP 171322 to 171922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,899 DEBUG Processing 666/899 atomic regions from SNP 199534 to 200134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,966 DEBUG Processing 689/855 atomic regions from SNP 206477 to 207077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,051 DEBUG Processing 455/646 atomic regions from SNP 136353 to 136953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,091 DEBUG Processing 547/1130 atomic regions from SNP 163993 to 164593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,096 DEBUG Processing 126/236 atomic regions from SNP 37588 to 38188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,141 DEBUG Processing 667/899 atomic regions from SNP 199834 to 200434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,146 DEBUG Processing 573/1020 atomic regions from SNP 171622 to 172222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,231 DEBUG Processing 690/855 atomic regions from SNP 206777 to 207377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,317 DEBUG Processing 456/646 atomic regions from SNP 136653 to 137253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,335 DEBUG Processing 127/236 atomic regions from SNP 37888 to 38488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,372 DEBUG Processing 548/1130 atomic regions from SNP 164293 to 164893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,387 DEBUG Processing 668/899 atomic regions from SNP 200134 to 200734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,428 DEBUG Processing 574/1020 atomic regions from SNP 171922 to 172522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,504 DEBUG Processing 691/855 atomic regions from SNP 207077 to 207677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,583 DEBUG Processing 128/236 atomic regions from SNP 38188 to 38788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,584 DEBUG Processing 457/646 atomic regions from SNP 136953 to 137553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,630 DEBUG Processing 669/899 atomic regions from SNP 200434 to 201034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,647 DEBUG Processing 549/1130 atomic regions from SNP 164593 to 165193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,700 DEBUG Processing 575/1020 atomic regions from SNP 172222 to 172822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,763 DEBUG Processing 692/855 atomic regions from SNP 207377 to 207977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,833 DEBUG Processing 129/236 atomic regions from SNP 38488 to 39088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,856 DEBUG Processing 458/646 atomic regions from SNP 137253 to 137853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,884 DEBUG Processing 670/899 atomic regions from SNP 200734 to 201334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,928 DEBUG Processing 550/1130 atomic regions from SNP 164893 to 165493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,974 DEBUG Processing 576/1020 atomic regions from SNP 172522 to 173122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,027 DEBUG Processing 693/855 atomic regions from SNP 207677 to 208277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,067 DEBUG Processing 130/236 atomic regions from SNP 38788 to 39388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,101 DEBUG Processing 459/646 atomic regions from SNP 137553 to 138153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,139 DEBUG Processing 671/899 atomic regions from SNP 201034 to 201634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,209 DEBUG Processing 551/1130 atomic regions from SNP 165193 to 165793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,258 DEBUG Processing 577/1020 atomic regions from SNP 172822 to 173422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,274 DEBUG Processing 694/855 atomic regions from SNP 207977 to 208577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,297 DEBUG Processing 131/236 atomic regions from SNP 39088 to 39688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,347 DEBUG Processing 460/646 atomic regions from SNP 137853 to 138453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,388 DEBUG Processing 672/899 atomic regions from SNP 201334 to 201934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,486 DEBUG Processing 552/1130 atomic regions from SNP 165493 to 166093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,525 DEBUG Processing 132/236 atomic regions from SNP 39388 to 39988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,532 DEBUG Processing 695/855 atomic regions from SNP 208277 to 208877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,541 DEBUG Processing 578/1020 atomic regions from SNP 173122 to 173722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,584 DEBUG Processing 461/646 atomic regions from SNP 138153 to 138753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,627 DEBUG Processing 673/899 atomic regions from SNP 201634 to 202234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,764 DEBUG Processing 133/236 atomic regions from SNP 39688 to 40288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,770 DEBUG Processing 553/1130 atomic regions from SNP 165793 to 166393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,801 DEBUG Processing 696/855 atomic regions from SNP 208577 to 209177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,816 DEBUG Processing 579/1020 atomic regions from SNP 173422 to 174022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,847 DEBUG Processing 462/646 atomic regions from SNP 138453 to 139053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,878 DEBUG Processing 674/899 atomic regions from SNP 201934 to 202534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,017 DEBUG Processing 134/236 atomic regions from SNP 39988 to 40588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,046 DEBUG Processing 554/1130 atomic regions from SNP 166093 to 166693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,073 DEBUG Processing 697/855 atomic regions from SNP 208877 to 209477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,086 DEBUG Processing 580/1020 atomic regions from SNP 173722 to 174322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,126 DEBUG Processing 463/646 atomic regions from SNP 138753 to 139353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,149 DEBUG Processing 675/899 atomic regions from SNP 202234 to 202834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,271 DEBUG Processing 135/236 atomic regions from SNP 40288 to 40888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,321 DEBUG Processing 698/855 atomic regions from SNP 209177 to 209777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,326 DEBUG Processing 555/1130 atomic regions from SNP 166393 to 166993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,359 DEBUG Processing 581/1020 atomic regions from SNP 174022 to 174622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,401 DEBUG Processing 464/646 atomic regions from SNP 139053 to 139653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,402 DEBUG Processing 676/899 atomic regions from SNP 202534 to 203134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,526 DEBUG Processing 136/236 atomic regions from SNP 40588 to 41188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,565 DEBUG Processing 699/855 atomic regions from SNP 209477 to 210077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,604 DEBUG Processing 556/1130 atomic regions from SNP 166693 to 167293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,631 DEBUG Processing 582/1020 atomic regions from SNP 174322 to 174922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,645 DEBUG Processing 677/899 atomic regions from SNP 202834 to 203434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,679 DEBUG Processing 465/646 atomic regions from SNP 139353 to 139953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,750 DEBUG Processing 137/236 atomic regions from SNP 40888 to 41488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,800 DEBUG Processing 700/855 atomic regions from SNP 209777 to 210377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,876 DEBUG Processing 557/1130 atomic regions from SNP 166993 to 167593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,903 DEBUG Processing 678/899 atomic regions from SNP 203134 to 203734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,906 DEBUG Processing 583/1020 atomic regions from SNP 174622 to 175222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,943 DEBUG Processing 466/646 atomic regions from SNP 139653 to 140253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,969 DEBUG Processing 138/236 atomic regions from SNP 41188 to 41788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,031 DEBUG Processing 701/855 atomic regions from SNP 210077 to 210677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,153 DEBUG Processing 558/1130 atomic regions from SNP 167293 to 167893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,162 DEBUG Processing 679/899 atomic regions from SNP 203434 to 204034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,184 DEBUG Processing 584/1020 atomic regions from SNP 174922 to 175522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,197 DEBUG Processing 139/236 atomic regions from SNP 41488 to 42088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,210 DEBUG Processing 467/646 atomic regions from SNP 139953 to 140553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,261 DEBUG Processing 702/855 atomic regions from SNP 210377 to 210977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,431 DEBUG Processing 559/1130 atomic regions from SNP 167593 to 168193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,434 DEBUG Processing 680/899 atomic regions from SNP 203734 to 204334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,436 DEBUG Processing 140/236 atomic regions from SNP 41788 to 42388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,462 DEBUG Processing 585/1020 atomic regions from SNP 175222 to 175822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,478 DEBUG Processing 468/646 atomic regions from SNP 140253 to 140853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,500 DEBUG Processing 703/855 atomic regions from SNP 210677 to 211277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,676 DEBUG Processing 141/236 atomic regions from SNP 42088 to 42688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,711 DEBUG Processing 560/1130 atomic regions from SNP 167893 to 168493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,723 DEBUG Processing 681/899 atomic regions from SNP 204034 to 204634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,740 DEBUG Processing 469/646 atomic regions from SNP 140553 to 141153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,743 DEBUG Processing 704/855 atomic regions from SNP 210977 to 211577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,744 DEBUG Processing 586/1020 atomic regions from SNP 175522 to 176122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,915 DEBUG Processing 142/236 atomic regions from SNP 42388 to 42988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,991 DEBUG Processing 705/855 atomic regions from SNP 211277 to 211877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,995 DEBUG Processing 561/1130 atomic regions from SNP 168193 to 168793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,008 DEBUG Processing 682/899 atomic regions from SNP 204334 to 204934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,020 DEBUG Processing 470/646 atomic regions from SNP 140853 to 141453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,032 DEBUG Processing 587/1020 atomic regions from SNP 175822 to 176422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,151 DEBUG Processing 143/236 atomic regions from SNP 42688 to 43288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,240 DEBUG Processing 706/855 atomic regions from SNP 211577 to 212177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,278 DEBUG Processing 683/899 atomic regions from SNP 204634 to 205234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,281 DEBUG Processing 562/1130 atomic regions from SNP 168493 to 169093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,307 DEBUG Processing 471/646 atomic regions from SNP 141153 to 141753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,323 DEBUG Processing 588/1020 atomic regions from SNP 176122 to 176722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,383 DEBUG Processing 144/236 atomic regions from SNP 42988 to 43588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,479 DEBUG Processing 707/855 atomic regions from SNP 211877 to 212477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,525 DEBUG Processing 684/899 atomic regions from SNP 204934 to 205534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,559 DEBUG Processing 563/1130 atomic regions from SNP 168793 to 169393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,602 DEBUG Processing 472/646 atomic regions from SNP 141453 to 142053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,617 DEBUG Processing 145/236 atomic regions from SNP 43288 to 43888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,624 DEBUG Processing 589/1020 atomic regions from SNP 176422 to 177022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,718 DEBUG Processing 708/855 atomic regions from SNP 212177 to 212777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,784 DEBUG Processing 685/899 atomic regions from SNP 205234 to 205834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,835 DEBUG Processing 564/1130 atomic regions from SNP 169093 to 169693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,847 DEBUG Processing 146/236 atomic regions from SNP 43588 to 44188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,888 DEBUG Processing 473/646 atomic regions from SNP 141753 to 142353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,931 DEBUG Processing 590/1020 atomic regions from SNP 176722 to 177322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,955 DEBUG Processing 709/855 atomic regions from SNP 212477 to 213077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,041 DEBUG Processing 686/899 atomic regions from SNP 205534 to 206134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,073 DEBUG Processing 147/236 atomic regions from SNP 43888 to 44488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,106 DEBUG Processing 565/1130 atomic regions from SNP 169393 to 169993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,152 DEBUG Processing 474/646 atomic regions from SNP 142053 to 142653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,192 DEBUG Processing 710/855 atomic regions from SNP 212777 to 213377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,246 DEBUG Processing 591/1020 atomic regions from SNP 177022 to 177622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,299 DEBUG Processing 687/899 atomic regions from SNP 205834 to 206434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,300 DEBUG Processing 148/236 atomic regions from SNP 44188 to 44788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,377 DEBUG Processing 566/1130 atomic regions from SNP 169693 to 170293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,417 DEBUG Processing 475/646 atomic regions from SNP 142353 to 142953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,428 DEBUG Processing 711/855 atomic regions from SNP 213077 to 213677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,532 DEBUG Processing 149/236 atomic regions from SNP 44488 to 45088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,555 DEBUG Processing 592/1020 atomic regions from SNP 177322 to 177922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,562 DEBUG Processing 688/899 atomic regions from SNP 206134 to 206734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,647 DEBUG Processing 567/1130 atomic regions from SNP 169993 to 170593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,660 DEBUG Processing 712/855 atomic regions from SNP 213377 to 213977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,678 DEBUG Processing 476/646 atomic regions from SNP 142653 to 143253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,765 DEBUG Processing 150/236 atomic regions from SNP 44788 to 45388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,829 DEBUG Processing 689/899 atomic regions from SNP 206434 to 207034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,861 DEBUG Processing 593/1020 atomic regions from SNP 177622 to 178222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,892 DEBUG Processing 713/855 atomic regions from SNP 213677 to 214277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,914 DEBUG Processing 568/1130 atomic regions from SNP 170293 to 170893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,951 DEBUG Processing 477/646 atomic regions from SNP 142953 to 143553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,997 DEBUG Processing 151/236 atomic regions from SNP 45088 to 45688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,080 DEBUG Processing 690/899 atomic regions from SNP 206734 to 207334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,127 DEBUG Processing 714/855 atomic regions from SNP 213977 to 214577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,148 DEBUG Processing 594/1020 atomic regions from SNP 177922 to 178522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,182 DEBUG Processing 569/1130 atomic regions from SNP 170593 to 171193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,220 DEBUG Processing 478/646 atomic regions from SNP 143253 to 143853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,222 DEBUG Processing 152/236 atomic regions from SNP 45388 to 45988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,332 DEBUG Processing 691/899 atomic regions from SNP 207034 to 207634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,372 DEBUG Processing 715/855 atomic regions from SNP 214277 to 214877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,422 DEBUG Processing 595/1020 atomic regions from SNP 178222 to 178822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,444 DEBUG Processing 153/236 atomic regions from SNP 45688 to 46288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,447 DEBUG Processing 570/1130 atomic regions from SNP 170893 to 171493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,469 DEBUG Processing 479/646 atomic regions from SNP 143553 to 144153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,589 DEBUG Processing 692/899 atomic regions from SNP 207334 to 207934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,625 DEBUG Processing 716/855 atomic regions from SNP 214577 to 215177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,674 DEBUG Processing 154/236 atomic regions from SNP 45988 to 46588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,694 DEBUG Processing 596/1020 atomic regions from SNP 178522 to 179122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,715 DEBUG Processing 480/646 atomic regions from SNP 143853 to 144453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,719 DEBUG Processing 571/1130 atomic regions from SNP 171193 to 171793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,840 DEBUG Processing 693/899 atomic regions from SNP 207634 to 208234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,878 DEBUG Processing 717/855 atomic regions from SNP 214877 to 215477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,914 DEBUG Processing 155/236 atomic regions from SNP 46288 to 46888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,967 DEBUG Processing 481/646 atomic regions from SNP 144153 to 144753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,976 DEBUG Processing 597/1020 atomic regions from SNP 178822 to 179422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,994 DEBUG Processing 572/1130 atomic regions from SNP 171493 to 172093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,102 DEBUG Processing 694/899 atomic regions from SNP 207934 to 208534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,147 DEBUG Processing 718/855 atomic regions from SNP 215177 to 215777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,165 DEBUG Processing 156/236 atomic regions from SNP 46588 to 47188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,236 DEBUG Processing 482/646 atomic regions from SNP 144453 to 145053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,269 DEBUG Processing 598/1020 atomic regions from SNP 179122 to 179722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,273 DEBUG Processing 573/1130 atomic regions from SNP 171793 to 172393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,345 DEBUG Processing 695/899 atomic regions from SNP 208234 to 208834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,403 DEBUG Processing 157/236 atomic regions from SNP 46888 to 47488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,413 DEBUG Processing 719/855 atomic regions from SNP 215477 to 216077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,507 DEBUG Processing 483/646 atomic regions from SNP 144753 to 145353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,555 DEBUG Processing 574/1130 atomic regions from SNP 172093 to 172693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,562 DEBUG Processing 599/1020 atomic regions from SNP 179422 to 180022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,586 DEBUG Processing 696/899 atomic regions from SNP 208534 to 209134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,627 DEBUG Processing 158/236 atomic regions from SNP 47188 to 47788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,648 DEBUG Processing 720/855 atomic regions from SNP 215777 to 216377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,774 DEBUG Processing 484/646 atomic regions from SNP 145053 to 145653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,843 DEBUG Processing 575/1130 atomic regions from SNP 172393 to 172993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,844 DEBUG Processing 697/899 atomic regions from SNP 208834 to 209434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,852 DEBUG Processing 600/1020 atomic regions from SNP 179722 to 180322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,862 DEBUG Processing 159/236 atomic regions from SNP 47488 to 48088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,885 DEBUG Processing 721/855 atomic regions from SNP 216077 to 216677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,031 DEBUG Processing 485/646 atomic regions from SNP 145353 to 145953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,112 DEBUG Processing 698/899 atomic regions from SNP 209134 to 209734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,113 DEBUG Processing 160/236 atomic regions from SNP 47788 to 48388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:31,139 DEBUG Processing 576/1130 atomic regions from SNP 172693 to 173293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,143 DEBUG Processing 601/1020 atomic regions from SNP 180022 to 180622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,147 DEBUG Processing 722/855 atomic regions from SNP 216377 to 216977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,290 DEBUG Processing 486/646 atomic regions from SNP 145653 to 146253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,361 DEBUG Processing 161/236 atomic regions from SNP 48088 to 48688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:31,373 DEBUG Processing 699/899 atomic regions from SNP 209434 to 210034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,421 DEBUG Processing 723/855 atomic regions from SNP 216677 to 217277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,425 DEBUG Processing 602/1020 atomic regions from SNP 180322 to 180922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,428 DEBUG Processing 577/1130 atomic regions from SNP 172993 to 173593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,554 DEBUG Processing 487/646 atomic regions from SNP 145953 to 146553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,594 DEBUG Processing 162/236 atomic regions from SNP 48388 to 48988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:31,627 DEBUG Processing 700/899 atomic regions from SNP 209734 to 210334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,706 DEBUG Processing 724/855 atomic regions from SNP 216977 to 217577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,706 DEBUG Processing 603/1020 atomic regions from SNP 180622 to 181222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,711 DEBUG Processing 578/1130 atomic regions from SNP 173293 to 173893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,818 DEBUG Processing 163/236 atomic regions from SNP 48688 to 49288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:31,835 DEBUG Processing 488/646 atomic regions from SNP 146253 to 146853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,873 DEBUG Processing 701/899 atomic regions from SNP 210034 to 210634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,989 DEBUG Processing 725/855 atomic regions from SNP 217277 to 217877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,993 DEBUG Processing 579/1130 atomic regions from SNP 173593 to 174193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,993 DEBUG Processing 604/1020 atomic regions from SNP 180922 to 181522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,051 DEBUG Processing 164/236 atomic regions from SNP 48988 to 49588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:32,122 DEBUG Processing 702/899 atomic regions from SNP 210334 to 210934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,130 DEBUG Processing 489/646 atomic regions from SNP 146553 to 147153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,268 DEBUG Processing 726/855 atomic regions from SNP 217577 to 218177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,273 DEBUG Processing 580/1130 atomic regions from SNP 173893 to 174493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,276 DEBUG Processing 605/1020 atomic regions from SNP 181222 to 181822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,286 DEBUG Processing 165/236 atomic regions from SNP 49288 to 49888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:32,370 DEBUG Processing 703/899 atomic regions from SNP 210634 to 211234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,421 DEBUG Processing 490/646 atomic regions from SNP 146853 to 147453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,524 DEBUG Processing 727/855 atomic regions from SNP 217877 to 218477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,528 DEBUG Processing 166/236 atomic regions from SNP 49588 to 50188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:32,554 DEBUG Processing 581/1130 atomic regions from SNP 174193 to 174793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,555 DEBUG Processing 606/1020 atomic regions from SNP 181522 to 182122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,622 DEBUG Processing 704/899 atomic regions from SNP 210934 to 211534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,713 DEBUG Processing 491/646 atomic regions from SNP 147153 to 147753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,763 DEBUG Processing 167/236 atomic regions from SNP 49888 to 50488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:32,767 DEBUG Processing 728/855 atomic regions from SNP 218177 to 218777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,833 DEBUG Processing 582/1130 atomic regions from SNP 174493 to 175093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,833 DEBUG Processing 607/1020 atomic regions from SNP 181822 to 182422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,873 DEBUG Processing 705/899 atomic regions from SNP 211234 to 211834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,997 DEBUG Processing 168/236 atomic regions from SNP 50188 to 50788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:33,006 DEBUG Processing 492/646 atomic regions from SNP 147453 to 148053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,008 DEBUG Processing 729/855 atomic regions from SNP 218477 to 219077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,110 DEBUG Processing 608/1020 atomic regions from SNP 182122 to 182722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,112 DEBUG Processing 583/1130 atomic regions from SNP 174793 to 175393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,121 DEBUG Processing 706/899 atomic regions from SNP 211534 to 212134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,231 DEBUG Processing 169/236 atomic regions from SNP 50488 to 51088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:33,252 DEBUG Processing 730/855 atomic regions from SNP 218777 to 219377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,299 DEBUG Processing 493/646 atomic regions from SNP 147753 to 148353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,368 DEBUG Processing 707/899 atomic regions from SNP 211834 to 212434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,381 DEBUG Processing 609/1020 atomic regions from SNP 182422 to 183022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,387 DEBUG Processing 584/1130 atomic regions from SNP 175093 to 175693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,466 DEBUG Processing 170/236 atomic regions from SNP 50788 to 51388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:33,492 DEBUG Processing 731/855 atomic regions from SNP 219077 to 219677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,585 DEBUG Processing 494/646 atomic regions from SNP 148053 to 148653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,627 DEBUG Processing 708/899 atomic regions from SNP 212134 to 212734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,654 DEBUG Processing 610/1020 atomic regions from SNP 182722 to 183322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,667 DEBUG Processing 585/1130 atomic regions from SNP 175393 to 175993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,701 DEBUG Processing 171/236 atomic regions from SNP 51088 to 51688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:33,734 DEBUG Processing 732/855 atomic regions from SNP 219377 to 219977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,857 DEBUG Processing 495/646 atomic regions from SNP 148353 to 148953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,873 DEBUG Processing 709/899 atomic regions from SNP 212434 to 213034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,933 DEBUG Processing 611/1020 atomic regions from SNP 183022 to 183622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,946 DEBUG Processing 586/1130 atomic regions from SNP 175693 to 176293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,951 DEBUG Processing 172/236 atomic regions from SNP 51388 to 51988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:33,976 DEBUG Processing 733/855 atomic regions from SNP 219677 to 220277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,121 DEBUG Processing 710/899 atomic regions from SNP 212734 to 213334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,132 DEBUG Processing 496/646 atomic regions from SNP 148653 to 149253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,194 DEBUG Processing 173/236 atomic regions from SNP 51688 to 52288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:34,207 DEBUG Processing 612/1020 atomic regions from SNP 183322 to 183922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,223 DEBUG Processing 734/855 atomic regions from SNP 219977 to 220577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,231 DEBUG Processing 587/1130 atomic regions from SNP 175993 to 176593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,389 DEBUG Processing 711/899 atomic regions from SNP 213034 to 213634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,414 DEBUG Processing 497/646 atomic regions from SNP 148953 to 149553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,431 DEBUG Processing 174/236 atomic regions from SNP 51988 to 52588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:34,468 DEBUG Processing 735/855 atomic regions from SNP 220277 to 220877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,487 DEBUG Processing 613/1020 atomic regions from SNP 183622 to 184222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,514 DEBUG Processing 588/1130 atomic regions from SNP 176293 to 176893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,670 DEBUG Processing 712/899 atomic regions from SNP 213334 to 213934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,692 DEBUG Processing 175/236 atomic regions from SNP 52288 to 52888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:34,698 DEBUG Processing 498/646 atomic regions from SNP 149253 to 149853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,714 DEBUG Processing 736/855 atomic regions from SNP 220577 to 221177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,760 DEBUG Processing 614/1020 atomic regions from SNP 183922 to 184522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,793 DEBUG Processing 589/1130 atomic regions from SNP 176593 to 177193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,951 DEBUG Processing 713/899 atomic regions from SNP 213634 to 214234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,952 DEBUG Processing 176/236 atomic regions from SNP 52588 to 53188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:34,952 DEBUG Processing 737/855 atomic regions from SNP 220877 to 221477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,973 DEBUG Processing 499/646 atomic regions from SNP 149553 to 150153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,028 DEBUG Processing 615/1020 atomic regions from SNP 184222 to 184822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,065 DEBUG Processing 590/1130 atomic regions from SNP 176893 to 177493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,191 DEBUG Processing 738/855 atomic regions from SNP 221177 to 221777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,192 DEBUG Processing 177/236 atomic regions from SNP 52888 to 53488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:35,226 DEBUG Processing 714/899 atomic regions from SNP 213934 to 214534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,244 DEBUG Processing 500/646 atomic regions from SNP 149853 to 150453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,300 DEBUG Processing 616/1020 atomic regions from SNP 184522 to 185122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,341 DEBUG Processing 591/1130 atomic regions from SNP 177193 to 177793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,431 DEBUG Processing 178/236 atomic regions from SNP 53188 to 53788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:35,440 DEBUG Processing 739/855 atomic regions from SNP 221477 to 222077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,508 DEBUG Processing 715/899 atomic regions from SNP 214234 to 214834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,513 DEBUG Processing 501/646 atomic regions from SNP 150153 to 150753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,579 DEBUG Processing 617/1020 atomic regions from SNP 184822 to 185422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,621 DEBUG Processing 592/1130 atomic regions from SNP 177493 to 178093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,679 DEBUG Processing 179/236 atomic regions from SNP 53488 to 54088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:35,696 DEBUG Processing 740/855 atomic regions from SNP 221777 to 222377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,769 DEBUG Processing 502/646 atomic regions from SNP 150453 to 151053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,779 DEBUG Processing 716/899 atomic regions from SNP 214534 to 215134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,865 DEBUG Processing 618/1020 atomic regions from SNP 185122 to 185722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,905 DEBUG Processing 593/1130 atomic regions from SNP 177793 to 178393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,922 DEBUG Processing 180/236 atomic regions from SNP 53788 to 54388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:35,941 DEBUG Processing 741/855 atomic regions from SNP 222077 to 222677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,021 DEBUG Processing 503/646 atomic regions from SNP 150753 to 151353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,021 DEBUG Processing 717/899 atomic regions from SNP 214834 to 215434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,142 DEBUG Processing 619/1020 atomic regions from SNP 185422 to 186022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,160 DEBUG Processing 181/236 atomic regions from SNP 54088 to 54688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:36,181 DEBUG Processing 594/1130 atomic regions from SNP 178093 to 178693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,188 DEBUG Processing 742/855 atomic regions from SNP 222377 to 222977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,264 DEBUG Processing 718/899 atomic regions from SNP 215134 to 215734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,271 DEBUG Processing 504/646 atomic regions from SNP 151053 to 151653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,389 DEBUG Processing 182/236 atomic regions from SNP 54388 to 54988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:36,416 DEBUG Processing 620/1020 atomic regions from SNP 185722 to 186322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,426 DEBUG Processing 743/855 atomic regions from SNP 222677 to 223277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,458 DEBUG Processing 595/1130 atomic regions from SNP 178393 to 178993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,513 DEBUG Processing 719/899 atomic regions from SNP 215434 to 216034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,526 DEBUG Processing 505/646 atomic regions from SNP 151353 to 151953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,615 DEBUG Processing 183/236 atomic regions from SNP 54688 to 55288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:36,667 DEBUG Processing 744/855 atomic regions from SNP 222977 to 223577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,689 DEBUG Processing 621/1020 atomic regions from SNP 186022 to 186622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,729 DEBUG Processing 596/1130 atomic regions from SNP 178693 to 179293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,754 DEBUG Processing 720/899 atomic regions from SNP 215734 to 216334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,797 DEBUG Processing 506/646 atomic regions from SNP 151653 to 152253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,845 DEBUG Processing 184/236 atomic regions from SNP 54988 to 55588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:36,911 DEBUG Processing 745/855 atomic regions from SNP 223277 to 223877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,962 DEBUG Processing 622/1020 atomic regions from SNP 186322 to 186922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,005 DEBUG Processing 721/899 atomic regions from SNP 216034 to 216634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,008 DEBUG Processing 597/1130 atomic regions from SNP 178993 to 179593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,069 DEBUG Processing 507/646 atomic regions from SNP 151953 to 152553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,073 DEBUG Processing 185/236 atomic regions from SNP 55288 to 55888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:37,146 DEBUG Processing 746/855 atomic regions from SNP 223577 to 224177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,229 DEBUG Processing 623/1020 atomic regions from SNP 186622 to 187222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,254 DEBUG Processing 722/899 atomic regions from SNP 216334 to 216934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,289 DEBUG Processing 598/1130 atomic regions from SNP 179293 to 179893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,304 DEBUG Processing 186/236 atomic regions from SNP 55588 to 56188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:37,343 DEBUG Processing 508/646 atomic regions from SNP 152253 to 152853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,375 DEBUG Processing 747/855 atomic regions from SNP 223877 to 224477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,501 DEBUG Processing 624/1020 atomic regions from SNP 186922 to 187522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,505 DEBUG Processing 723/899 atomic regions from SNP 216634 to 217234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,543 DEBUG Processing 187/236 atomic regions from SNP 55888 to 56488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:37,588 DEBUG Processing 599/1130 atomic regions from SNP 179593 to 180193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,610 DEBUG Processing 748/855 atomic regions from SNP 224177 to 224777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,624 DEBUG Processing 509/646 atomic regions from SNP 152553 to 153153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,771 DEBUG Processing 724/899 atomic regions from SNP 216934 to 217534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,773 DEBUG Processing 625/1020 atomic regions from SNP 187222 to 187822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,785 DEBUG Processing 188/236 atomic regions from SNP 56188 to 56788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:37,857 DEBUG Processing 749/855 atomic regions from SNP 224477 to 225077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,898 DEBUG Processing 600/1130 atomic regions from SNP 179893 to 180493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,908 DEBUG Processing 510/646 atomic regions from SNP 152853 to 153453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,016 DEBUG Processing 189/236 atomic regions from SNP 56488 to 57088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:38,041 DEBUG Processing 626/1020 atomic regions from SNP 187522 to 188122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,047 DEBUG Processing 725/899 atomic regions from SNP 217234 to 217834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,130 DEBUG Processing 750/855 atomic regions from SNP 224777 to 225377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,192 DEBUG Processing 511/646 atomic regions from SNP 153153 to 153753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,202 DEBUG Processing 601/1130 atomic regions from SNP 180193 to 180793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,249 DEBUG Processing 190/236 atomic regions from SNP 56788 to 57388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:38,316 DEBUG Processing 627/1020 atomic regions from SNP 187822 to 188422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,319 DEBUG Processing 726/899 atomic regions from SNP 217534 to 218134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,407 DEBUG Processing 751/855 atomic regions from SNP 225077 to 225677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,466 DEBUG Processing 512/646 atomic regions from SNP 153453 to 154053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,484 DEBUG Processing 602/1130 atomic regions from SNP 180493 to 181093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,497 DEBUG Processing 191/236 atomic regions from SNP 57088 to 57688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:38,591 DEBUG Processing 628/1020 atomic regions from SNP 188122 to 188722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,598 DEBUG Processing 727/899 atomic regions from SNP 217834 to 218434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,675 DEBUG Processing 752/855 atomic regions from SNP 225377 to 225977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,745 DEBUG Processing 513/646 atomic regions from SNP 153753 to 154353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,754 DEBUG Processing 192/236 atomic regions from SNP 57388 to 57988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:38,766 DEBUG Processing 603/1130 atomic regions from SNP 180793 to 181393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,859 DEBUG Processing 629/1020 atomic regions from SNP 188422 to 189022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,869 DEBUG Processing 728/899 atomic regions from SNP 218134 to 218734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,942 DEBUG Processing 753/855 atomic regions from SNP 225677 to 226277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,017 DEBUG Processing 193/236 atomic regions from SNP 57688 to 58288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:39,028 DEBUG Processing 514/646 atomic regions from SNP 154053 to 154653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,061 DEBUG Processing 604/1130 atomic regions from SNP 181093 to 181693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,115 DEBUG Processing 729/899 atomic regions from SNP 218434 to 219034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,132 DEBUG Processing 630/1020 atomic regions from SNP 188722 to 189322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,201 DEBUG Processing 754/855 atomic regions from SNP 225977 to 226577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,276 DEBUG Processing 194/236 atomic regions from SNP 57988 to 58588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:39,314 DEBUG Processing 515/646 atomic regions from SNP 154353 to 154953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,352 DEBUG Processing 605/1130 atomic regions from SNP 181393 to 181993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,376 DEBUG Processing 730/899 atomic regions from SNP 218734 to 219334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,427 DEBUG Processing 631/1020 atomic regions from SNP 189022 to 189622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,491 DEBUG Processing 755/855 atomic regions from SNP 226277 to 226877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,545 DEBUG Processing 195/236 atomic regions from SNP 58288 to 58888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:39,626 DEBUG Processing 516/646 atomic regions from SNP 154653 to 155253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,630 DEBUG Processing 731/899 atomic regions from SNP 219034 to 219634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,639 DEBUG Processing 606/1130 atomic regions from SNP 181693 to 182293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,703 DEBUG Processing 632/1020 atomic regions from SNP 189322 to 189922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,772 DEBUG Processing 756/855 atomic regions from SNP 226577 to 227177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,807 DEBUG Processing 196/236 atomic regions from SNP 58588 to 59188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:39,913 DEBUG Processing 732/899 atomic regions from SNP 219334 to 219934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,923 DEBUG Processing 517/646 atomic regions from SNP 154953 to 155553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,925 DEBUG Processing 607/1130 atomic regions from SNP 181993 to 182593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,987 DEBUG Processing 633/1020 atomic regions from SNP 189622 to 190222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,057 DEBUG Processing 757/855 atomic regions from SNP 226877 to 227477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,069 DEBUG Processing 197/236 atomic regions from SNP 58888 to 59488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:40,196 DEBUG Processing 733/899 atomic regions from SNP 219634 to 220234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,207 DEBUG Processing 608/1130 atomic regions from SNP 182293 to 182893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,221 DEBUG Processing 518/646 atomic regions from SNP 155253 to 155853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,267 DEBUG Processing 634/1020 atomic regions from SNP 189922 to 190522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,318 DEBUG Processing 198/236 atomic regions from SNP 59188 to 59788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:40,330 DEBUG Processing 758/855 atomic regions from SNP 227177 to 227777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,445 DEBUG Processing 734/899 atomic regions from SNP 219934 to 220534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,481 DEBUG Processing 609/1130 atomic regions from SNP 182593 to 183193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,515 DEBUG Processing 519/646 atomic regions from SNP 155553 to 156153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,551 DEBUG Processing 635/1020 atomic regions from SNP 190222 to 190822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,561 DEBUG Processing 199/236 atomic regions from SNP 59488 to 60088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:40,598 DEBUG Processing 759/855 atomic regions from SNP 227477 to 228077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,698 DEBUG Processing 735/899 atomic regions from SNP 220234 to 220834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,758 DEBUG Processing 610/1130 atomic regions from SNP 182893 to 183493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,797 DEBUG Processing 200/236 atomic regions from SNP 59788 to 60388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:40,805 DEBUG Processing 520/646 atomic regions from SNP 155853 to 156453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,838 DEBUG Processing 636/1020 atomic regions from SNP 190522 to 191122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,871 DEBUG Processing 760/855 atomic regions from SNP 227777 to 228377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,960 DEBUG Processing 736/899 atomic regions from SNP 220534 to 221134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,040 DEBUG Processing 201/236 atomic regions from SNP 60088 to 60688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:41,041 DEBUG Processing 611/1130 atomic regions from SNP 183193 to 183793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,104 DEBUG Processing 521/646 atomic regions from SNP 156153 to 156753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,129 DEBUG Processing 637/1020 atomic regions from SNP 190822 to 191422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,150 DEBUG Processing 761/855 atomic regions from SNP 228077 to 228677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,242 DEBUG Processing 737/899 atomic regions from SNP 220834 to 221434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,316 DEBUG Processing 202/236 atomic regions from SNP 60388 to 60988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:41,340 DEBUG Processing 612/1130 atomic regions from SNP 183493 to 184093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,418 DEBUG Processing 522/646 atomic regions from SNP 156453 to 157053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,419 DEBUG Processing 638/1020 atomic regions from SNP 191122 to 191722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,453 DEBUG Processing 762/855 atomic regions from SNP 228377 to 228977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,515 DEBUG Processing 738/899 atomic regions from SNP 221134 to 221734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,585 DEBUG Processing 203/236 atomic regions from SNP 60688 to 61288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:41,621 DEBUG Processing 613/1130 atomic regions from SNP 183793 to 184393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,707 DEBUG Processing 639/1020 atomic regions from SNP 191422 to 192022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,719 DEBUG Processing 523/646 atomic regions from SNP 156753 to 157353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,725 DEBUG Processing 763/855 atomic regions from SNP 228677 to 229277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,772 DEBUG Processing 739/899 atomic regions from SNP 221434 to 222034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,844 DEBUG Processing 204/236 atomic regions from SNP 60988 to 61588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:41,898 DEBUG Processing 614/1130 atomic regions from SNP 184093 to 184693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,968 DEBUG Processing 764/855 atomic regions from SNP 228977 to 229577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,020 DEBUG Processing 640/1020 atomic regions from SNP 191722 to 192322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,022 DEBUG Processing 524/646 atomic regions from SNP 157053 to 157653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,027 DEBUG Processing 740/899 atomic regions from SNP 221734 to 222334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,110 DEBUG Processing 205/236 atomic regions from SNP 61288 to 61888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:42,174 DEBUG Processing 615/1130 atomic regions from SNP 184393 to 184993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,212 DEBUG Processing 765/855 atomic regions from SNP 229277 to 229877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,276 DEBUG Processing 741/899 atomic regions from SNP 222034 to 222634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,324 DEBUG Processing 525/646 atomic regions from SNP 157353 to 157953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,335 DEBUG Processing 641/1020 atomic regions from SNP 192022 to 192622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,359 DEBUG Processing 206/236 atomic regions from SNP 61588 to 62188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:42,453 DEBUG Processing 616/1130 atomic regions from SNP 184693 to 185293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,461 DEBUG Processing 766/855 atomic regions from SNP 229577 to 230177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,523 DEBUG Processing 742/899 atomic regions from SNP 222334 to 222934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,596 DEBUG Processing 207/236 atomic regions from SNP 61888 to 62488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:42,629 DEBUG Processing 526/646 atomic regions from SNP 157653 to 158253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,635 DEBUG Processing 642/1020 atomic regions from SNP 192322 to 192922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,713 DEBUG Processing 767/855 atomic regions from SNP 229877 to 230477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,732 DEBUG Processing 617/1130 atomic regions from SNP 184993 to 185593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,773 DEBUG Processing 743/899 atomic regions from SNP 222634 to 223234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,840 DEBUG Processing 208/236 atomic regions from SNP 62188 to 62788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:42,924 DEBUG Processing 527/646 atomic regions from SNP 157953 to 158553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,925 DEBUG Processing 643/1020 atomic regions from SNP 192622 to 193222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,994 DEBUG Processing 768/855 atomic regions from SNP 230177 to 230777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,019 DEBUG Processing 618/1130 atomic regions from SNP 185293 to 185893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,035 DEBUG Processing 744/899 atomic regions from SNP 222934 to 223534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,083 DEBUG Processing 209/236 atomic regions from SNP 62488 to 63088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:43,222 DEBUG Processing 644/1020 atomic regions from SNP 192922 to 193522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,225 DEBUG Processing 528/646 atomic regions from SNP 158253 to 158853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,298 DEBUG Processing 745/899 atomic regions from SNP 223234 to 223834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,299 DEBUG Processing 769/855 atomic regions from SNP 230477 to 231077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,314 DEBUG Processing 619/1130 atomic regions from SNP 185593 to 186193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,331 DEBUG Processing 210/236 atomic regions from SNP 62788 to 63388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:43,505 DEBUG Processing 645/1020 atomic regions from SNP 193222 to 193822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,516 DEBUG Processing 529/646 atomic regions from SNP 158553 to 159153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,562 DEBUG Processing 746/899 atomic regions from SNP 223534 to 224134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,583 DEBUG Processing 770/855 atomic regions from SNP 230777 to 231377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,583 DEBUG Processing 211/236 atomic regions from SNP 63088 to 63688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:43,608 DEBUG Processing 620/1130 atomic regions from SNP 185893 to 186493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,804 DEBUG Processing 646/1020 atomic regions from SNP 193522 to 194122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,811 DEBUG Processing 530/646 atomic regions from SNP 158853 to 159453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,823 DEBUG Processing 747/899 atomic regions from SNP 223834 to 224434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,831 DEBUG Processing 212/236 atomic regions from SNP 63388 to 63988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:43,871 DEBUG Processing 771/855 atomic regions from SNP 231077 to 231677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,902 DEBUG Processing 621/1130 atomic regions from SNP 186193 to 186793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,076 DEBUG Processing 213/236 atomic regions from SNP 63688 to 64288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:44,079 DEBUG Processing 748/899 atomic regions from SNP 224134 to 224734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,090 DEBUG Processing 647/1020 atomic regions from SNP 193822 to 194422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,101 DEBUG Processing 531/646 atomic regions from SNP 159153 to 159753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,164 DEBUG Processing 772/855 atomic regions from SNP 231377 to 231977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,192 DEBUG Processing 622/1130 atomic regions from SNP 186493 to 187093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,316 DEBUG Processing 214/236 atomic regions from SNP 63988 to 64588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:44,334 DEBUG Processing 749/899 atomic regions from SNP 224434 to 225034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,374 DEBUG Processing 648/1020 atomic regions from SNP 194122 to 194722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,395 DEBUG Processing 532/646 atomic regions from SNP 159453 to 160053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,448 DEBUG Processing 773/855 atomic regions from SNP 231677 to 232277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,482 DEBUG Processing 623/1130 atomic regions from SNP 186793 to 187393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,583 DEBUG Processing 215/236 atomic regions from SNP 64288 to 64888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:44,594 DEBUG Processing 750/899 atomic regions from SNP 224734 to 225334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,662 DEBUG Processing 649/1020 atomic regions from SNP 194422 to 195022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,695 DEBUG Processing 533/646 atomic regions from SNP 159753 to 160353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,719 DEBUG Processing 774/855 atomic regions from SNP 231977 to 232577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,770 DEBUG Processing 624/1130 atomic regions from SNP 187093 to 187693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,850 DEBUG Processing 751/899 atomic regions from SNP 225034 to 225634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,858 DEBUG Processing 216/236 atomic regions from SNP 64588 to 65188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:44,949 DEBUG Processing 650/1020 atomic regions from SNP 194722 to 195322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,992 DEBUG Processing 534/646 atomic regions from SNP 160053 to 160653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,992 DEBUG Processing 775/855 atomic regions from SNP 232277 to 232877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,057 DEBUG Processing 625/1130 atomic regions from SNP 187393 to 187993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,107 DEBUG Processing 752/899 atomic regions from SNP 225334 to 225934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,119 DEBUG Processing 217/236 atomic regions from SNP 64888 to 65488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:45,218 DEBUG Processing 651/1020 atomic regions from SNP 195022 to 195622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,232 DEBUG Processing 776/855 atomic regions from SNP 232577 to 233177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,274 DEBUG Processing 535/646 atomic regions from SNP 160353 to 160953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,347 DEBUG Processing 626/1130 atomic regions from SNP 187693 to 188293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,369 DEBUG Processing 753/899 atomic regions from SNP 225634 to 226234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,383 DEBUG Processing 218/236 atomic regions from SNP 65188 to 65788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:45,472 DEBUG Processing 777/855 atomic regions from SNP 232877 to 233477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,492 DEBUG Processing 652/1020 atomic regions from SNP 195322 to 195922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,533 DEBUG Processing 536/646 atomic regions from SNP 160653 to 161253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,646 DEBUG Processing 754/899 atomic regions from SNP 225934 to 226534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,659 DEBUG Processing 627/1130 atomic regions from SNP 187993 to 188593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,659 DEBUG Processing 219/236 atomic regions from SNP 65488 to 66088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:45,721 DEBUG Processing 778/855 atomic regions from SNP 233177 to 233777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,769 DEBUG Processing 653/1020 atomic regions from SNP 195622 to 196222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,803 DEBUG Processing 537/646 atomic regions from SNP 160953 to 161553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,902 DEBUG Processing 755/899 atomic regions from SNP 226234 to 226834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,905 DEBUG Processing 220/236 atomic regions from SNP 65788 to 66388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:45,945 DEBUG Processing 628/1130 atomic regions from SNP 188293 to 188893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,970 DEBUG Processing 779/855 atomic regions from SNP 233477 to 234077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,054 DEBUG Processing 654/1020 atomic regions from SNP 195922 to 196522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,080 DEBUG Processing 538/646 atomic regions from SNP 161253 to 161853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,156 DEBUG Processing 756/899 atomic regions from SNP 226534 to 227134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,159 DEBUG Processing 221/236 atomic regions from SNP 66088 to 66688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:46,232 DEBUG Processing 629/1130 atomic regions from SNP 188593 to 189193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,240 DEBUG Processing 780/855 atomic regions from SNP 233777 to 234377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,345 DEBUG Processing 655/1020 atomic regions from SNP 196222 to 196822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,368 DEBUG Processing 539/646 atomic regions from SNP 161553 to 162153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,403 DEBUG Processing 222/236 atomic regions from SNP 66388 to 66988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:46,410 DEBUG Processing 757/899 atomic regions from SNP 226834 to 227434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,518 DEBUG Processing 630/1130 atomic regions from SNP 188893 to 189493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,526 DEBUG Processing 781/855 atomic regions from SNP 234077 to 234677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,645 DEBUG Processing 656/1020 atomic regions from SNP 196522 to 197122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,649 DEBUG Processing 223/236 atomic regions from SNP 66688 to 67288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:46,659 DEBUG Processing 540/646 atomic regions from SNP 161853 to 162453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,667 DEBUG Processing 758/899 atomic regions from SNP 227134 to 227734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,805 DEBUG Processing 631/1130 atomic regions from SNP 189193 to 189793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,808 DEBUG Processing 782/855 atomic regions from SNP 234377 to 234977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,900 DEBUG Processing 224/236 atomic regions from SNP 66988 to 67588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:46,938 DEBUG Processing 657/1020 atomic regions from SNP 196822 to 197422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,942 DEBUG Processing 541/646 atomic regions from SNP 162153 to 162753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,954 DEBUG Processing 759/899 atomic regions from SNP 227434 to 228034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,072 DEBUG Processing 783/855 atomic regions from SNP 234677 to 235277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,087 DEBUG Processing 632/1130 atomic regions from SNP 189493 to 190093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,137 DEBUG Processing 225/236 atomic regions from SNP 67288 to 67888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:47,228 DEBUG Processing 658/1020 atomic regions from SNP 197122 to 197722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,229 DEBUG Processing 542/646 atomic regions from SNP 162453 to 163053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,241 DEBUG Processing 760/899 atomic regions from SNP 227734 to 228334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,352 DEBUG Processing 784/855 atomic regions from SNP 234977 to 235577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,371 DEBUG Processing 633/1130 atomic regions from SNP 189793 to 190393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,382 DEBUG Processing 226/236 atomic regions from SNP 67588 to 68188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:47,535 DEBUG Processing 761/899 atomic regions from SNP 228034 to 228634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,536 DEBUG Processing 659/1020 atomic regions from SNP 197422 to 198022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,538 DEBUG Processing 543/646 atomic regions from SNP 162753 to 163353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,622 DEBUG Processing 227/236 atomic regions from SNP 67888 to 68488 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:47,633 DEBUG Processing 785/855 atomic regions from SNP 235277 to 235877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,655 DEBUG Processing 634/1130 atomic regions from SNP 190093 to 190693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,806 DEBUG Processing 762/899 atomic regions from SNP 228334 to 228934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,821 DEBUG Processing 660/1020 atomic regions from SNP 197722 to 198322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,825 DEBUG Processing 544/646 atomic regions from SNP 163053 to 163653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,867 DEBUG Processing 228/236 atomic regions from SNP 68188 to 68788 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:47,910 DEBUG Processing 786/855 atomic regions from SNP 235577 to 236177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,942 DEBUG Processing 635/1130 atomic regions from SNP 190393 to 190993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,081 DEBUG Processing 763/899 atomic regions from SNP 228634 to 229234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,112 DEBUG Processing 661/1020 atomic regions from SNP 198022 to 198622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,118 DEBUG Processing 229/236 atomic regions from SNP 68488 to 69088 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:48,126 DEBUG Processing 545/646 atomic regions from SNP 163353 to 163953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,184 DEBUG Processing 787/855 atomic regions from SNP 235877 to 236477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,231 DEBUG Processing 636/1130 atomic regions from SNP 190693 to 191293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,331 DEBUG Processing 764/899 atomic regions from SNP 228934 to 229534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,361 DEBUG Processing 230/236 atomic regions from SNP 68788 to 69388 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:48,400 DEBUG Processing 662/1020 atomic regions from SNP 198322 to 198922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,407 DEBUG Processing 546/646 atomic regions from SNP 163653 to 164253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,472 DEBUG Processing 788/855 atomic regions from SNP 236177 to 236777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,521 DEBUG Processing 637/1130 atomic regions from SNP 190993 to 191593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,589 DEBUG Processing 765/899 atomic regions from SNP 229234 to 229834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,599 DEBUG Processing 231/236 atomic regions from SNP 69088 to 69688 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:48,685 DEBUG Processing 663/1020 atomic regions from SNP 198622 to 199222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,691 DEBUG Processing 547/646 atomic regions from SNP 163953 to 164553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,758 DEBUG Processing 789/855 atomic regions from SNP 236477 to 237077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,810 DEBUG Processing 638/1130 atomic regions from SNP 191293 to 191893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,842 DEBUG Processing 232/236 atomic regions from SNP 69388 to 69988 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:48,848 DEBUG Processing 766/899 atomic regions from SNP 229534 to 230134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,973 DEBUG Processing 664/1020 atomic regions from SNP 198922 to 199522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,991 DEBUG Processing 548/646 atomic regions from SNP 164253 to 164853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,050 DEBUG Processing 790/855 atomic regions from SNP 236777 to 237377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,096 DEBUG Processing 233/236 atomic regions from SNP 69688 to 70288 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:49,106 DEBUG Processing 639/1130 atomic regions from SNP 191593 to 192193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,139 DEBUG Processing 767/899 atomic regions from SNP 229834 to 230434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,255 DEBUG Processing 665/1020 atomic regions from SNP 199222 to 199822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,276 DEBUG Processing 549/646 atomic regions from SNP 164553 to 165153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,342 DEBUG Processing 791/855 atomic regions from SNP 237077 to 237677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,343 DEBUG Processing 234/236 atomic regions from SNP 69988 to 70588 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:49,419 DEBUG Processing 640/1130 atomic regions from SNP 191893 to 192493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,428 DEBUG Processing 768/899 atomic regions from SNP 230134 to 230734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,532 DEBUG Processing 550/646 atomic regions from SNP 164853 to 165453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,536 DEBUG Processing 666/1020 atomic regions from SNP 199522 to 200122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,585 DEBUG Processing 235/236 atomic regions from SNP 70288 to 70888 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:49,594 DEBUG Processing 792/855 atomic regions from SNP 237377 to 237977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,688 DEBUG Processing 769/899 atomic regions from SNP 230434 to 231034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,707 DEBUG Processing 641/1130 atomic regions from SNP 192193 to 192793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,798 DEBUG Processing 551/646 atomic regions from SNP 165153 to 165753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,822 DEBUG Processing 667/1020 atomic regions from SNP 199822 to 200422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,838 DEBUG Processing 236/236 atomic regions from SNP 70588 to 71188 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:49,850 DEBUG Processing 793/855 atomic regions from SNP 237677 to 238277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,955 DEBUG Processing 770/899 atomic regions from SNP 230734 to 231334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,982 DEBUG Unique SNPs positions in subchromosome 6: 71189 2025-01-31 09:47:49,998 DEBUG Processing 642/1130 atomic regions from SNP 192493 to 193093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,085 DEBUG Processing 552/646 atomic regions from SNP 165453 to 166053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,107 DEBUG Processing 668/1020 atomic regions from SNP 200122 to 200722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,107 DEBUG Processing 794/855 atomic regions from SNP 237977 to 238577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,153 DEBUG Subchromosome time: 66.08519309107214, subchromosome SNPs: 71189 2025-01-31 09:47:50,153 DEBUG Estimated BADs: [1.26, 6.29, 2.52, 0.63, 1.26, 0.63, 0.00, 0.00, 2.52, 0.63, 3.77, 1.26, 12.58, 1.26, 3.77, 0.63, 1.26, 3.77, 1.26, 2.52, 1.26, 0.63, 0.00, 0.63, 1.26, 2.52, 1.26, 12.58] SNP counts: [3896, 759, 9970, 4502, 8480, 5342, 4, 56, 5492, 15357, 602, 3584, 156, 35272, 4204, 25914, 3797, 1917, 6482, 12315, 8154, 20206, 3, 13045, 44201, 3837, 10069, 37] SNP IDs counts: [3896, 759, 9970, 4502, 8480, 5342, 4, 56, 5492, 15357, 602, 3584, 156, 35272, 4204, 25914, 3797, 1917, 6482, 12315, 8154, 20206, 3, 13045, 44201, 3837, 10069, 37] Critical gap: 751856bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.54Mbp, 7.94Mbp, 13.76Mbp, 16.48Mbp, 21.53Mbp, 26.92Mbp[1.11Mbp], 28.73Mbp[0.83Mbp], 29.91Mbp[1.22Mbp], 38.87Mbp, 48.05Mbp, 48.37Mbp, 50.55Mbp, 50.64Mbp, 72.91Mbp, 75.67Mbp, 91.28Mbp, 93.79Mbp, 95.03Mbp, 98.94Mbp, 105.95Mbp, 110.86Mbp, 124.25Mbp[0.88Mbp], 125.13Mbp[0.88Mbp], 133.90Mbp, 162.12Mbp, 164.26Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:47:50,153 DEBUG chrX time: 66.08578723797109 s 2025-01-31 09:47:50,214 DEBUG Processing 771/899 atomic regions from SNP 231034 to 231634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,286 DEBUG Processing 643/1130 atomic regions from SNP 192793 to 193393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,326 DEBUG chrX: Fitting background model for 25 segments 2025-01-31 09:47:50,369 DEBUG Processing 795/855 atomic regions from SNP 238277 to 238877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,378 DEBUG Processing 553/646 atomic regions from SNP 165753 to 166353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,401 DEBUG Processing 669/1020 atomic regions from SNP 200422 to 201022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,479 DEBUG Processing 772/899 atomic regions from SNP 231334 to 231934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,590 DEBUG Processing 644/1130 atomic regions from SNP 193093 to 193693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,641 DEBUG Processing 796/855 atomic regions from SNP 238577 to 239177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,688 DEBUG Processing 554/646 atomic regions from SNP 166053 to 166653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,706 DEBUG Processing 670/1020 atomic regions from SNP 200722 to 201322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,761 DEBUG Processing 773/899 atomic regions from SNP 231634 to 232234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,884 DEBUG Processing 645/1130 atomic regions from SNP 193393 to 193993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,903 DEBUG Processing 797/855 atomic regions from SNP 238877 to 239477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,982 DEBUG Processing 555/646 atomic regions from SNP 166353 to 166953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,000 DEBUG Processing 671/1020 atomic regions from SNP 201022 to 201622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,029 DEBUG Processing 774/899 atomic regions from SNP 231934 to 232534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,162 DEBUG Processing 798/855 atomic regions from SNP 239177 to 239777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,182 DEBUG Processing 646/1130 atomic regions from SNP 193693 to 194293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,274 DEBUG Processing 556/646 atomic regions from SNP 166653 to 167253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,292 DEBUG Processing 775/899 atomic regions from SNP 232234 to 232834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,297 DEBUG Processing 672/1020 atomic regions from SNP 201322 to 201922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,420 DEBUG Processing 799/855 atomic regions from SNP 239477 to 240077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,473 DEBUG Processing 647/1130 atomic regions from SNP 193993 to 194593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,551 DEBUG Processing 776/899 atomic regions from SNP 232534 to 233134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,564 DEBUG Processing 557/646 atomic regions from SNP 166953 to 167553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,596 DEBUG Processing 673/1020 atomic regions from SNP 201622 to 202222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,686 DEBUG Processing 800/855 atomic regions from SNP 239777 to 240377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,766 DEBUG Processing 648/1130 atomic regions from SNP 194293 to 194893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,815 DEBUG Processing 777/899 atomic regions from SNP 232834 to 233434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,854 DEBUG Processing 558/646 atomic regions from SNP 167253 to 167853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,894 DEBUG Processing 674/1020 atomic regions from SNP 201922 to 202522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,976 DEBUG Processing 801/855 atomic regions from SNP 240077 to 240677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,065 DEBUG Processing 649/1130 atomic regions from SNP 194593 to 195193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,076 DEBUG Processing 778/899 atomic regions from SNP 233134 to 233734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,125 DEBUG Processing 559/646 atomic regions from SNP 167553 to 168153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,187 DEBUG Processing 675/1020 atomic regions from SNP 202222 to 202822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,258 DEBUG Processing 802/855 atomic regions from SNP 240377 to 240977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,339 DEBUG Processing 779/899 atomic regions from SNP 233434 to 234034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,368 DEBUG Processing 650/1130 atomic regions from SNP 194893 to 195493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,399 DEBUG Processing 560/646 atomic regions from SNP 167853 to 168453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,481 DEBUG Processing 676/1020 atomic regions from SNP 202522 to 203122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,551 DEBUG Processing 803/855 atomic regions from SNP 240677 to 241277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,610 DEBUG Processing 780/899 atomic regions from SNP 233734 to 234334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,665 DEBUG Processing 561/646 atomic regions from SNP 168153 to 168753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,666 DEBUG Processing 651/1130 atomic regions from SNP 195193 to 195793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,776 DEBUG Processing 677/1020 atomic regions from SNP 202822 to 203422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,850 DEBUG Processing 804/855 atomic regions from SNP 240977 to 241577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:52,878 DEBUG Processing 781/899 atomic regions from SNP 234034 to 234634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,947 DEBUG Processing 562/646 atomic regions from SNP 168453 to 169053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,965 DEBUG Processing 652/1130 atomic regions from SNP 195493 to 196093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,081 DEBUG Processing 678/1020 atomic regions from SNP 203122 to 203722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,141 DEBUG Processing 805/855 atomic regions from SNP 241277 to 241877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,148 DEBUG Processing 782/899 atomic regions from SNP 234334 to 234934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,235 DEBUG Processing 563/646 atomic regions from SNP 168753 to 169353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,259 DEBUG Processing 653/1130 atomic regions from SNP 195793 to 196393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,403 DEBUG Processing 679/1020 atomic regions from SNP 203422 to 204022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,419 DEBUG Processing 783/899 atomic regions from SNP 234634 to 235234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,433 DEBUG Processing 806/855 atomic regions from SNP 241577 to 242177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,522 DEBUG Processing 564/646 atomic regions from SNP 169053 to 169653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,552 DEBUG Processing 654/1130 atomic regions from SNP 196093 to 196693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,691 DEBUG Processing 784/899 atomic regions from SNP 234934 to 235534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,730 DEBUG Processing 807/855 atomic regions from SNP 241877 to 242477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:53,735 DEBUG Processing 680/1020 atomic regions from SNP 203722 to 204322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,814 DEBUG Processing 565/646 atomic regions from SNP 169353 to 169953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,849 DEBUG Processing 655/1130 atomic regions from SNP 196393 to 196993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,961 DEBUG Processing 785/899 atomic regions from SNP 235234 to 235834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,027 DEBUG Processing 808/855 atomic regions from SNP 242177 to 242777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,065 DEBUG Processing 681/1020 atomic regions from SNP 204022 to 204622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,099 DEBUG Processing 566/646 atomic regions from SNP 169653 to 170253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,143 DEBUG Processing 656/1130 atomic regions from SNP 196693 to 197293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,229 DEBUG Processing 786/899 atomic regions from SNP 235534 to 236134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,328 DEBUG Processing 809/855 atomic regions from SNP 242477 to 243077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,382 DEBUG Processing 567/646 atomic regions from SNP 169953 to 170553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,391 DEBUG Processing 682/1020 atomic regions from SNP 204322 to 204922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,436 DEBUG Processing 657/1130 atomic regions from SNP 196993 to 197593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,492 DEBUG Processing 787/899 atomic regions from SNP 235834 to 236434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,617 DEBUG Processing 810/855 atomic regions from SNP 242777 to 243377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,674 DEBUG Processing 568/646 atomic regions from SNP 170253 to 170853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,714 DEBUG Processing 683/1020 atomic regions from SNP 204622 to 205222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,734 DEBUG Processing 658/1130 atomic regions from SNP 197293 to 197893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,759 DEBUG Processing 788/899 atomic regions from SNP 236134 to 236734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,895 DEBUG Processing 811/855 atomic regions from SNP 243077 to 243677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:54,967 DEBUG Processing 569/646 atomic regions from SNP 170553 to 171153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,018 DEBUG Processing 684/1020 atomic regions from SNP 204922 to 205522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,028 DEBUG Processing 789/899 atomic regions from SNP 236434 to 237034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,034 DEBUG Processing 659/1130 atomic regions from SNP 197593 to 198193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,189 DEBUG Processing 812/855 atomic regions from SNP 243377 to 243977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,261 DEBUG Processing 570/646 atomic regions from SNP 170853 to 171453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,298 DEBUG Processing 790/899 atomic regions from SNP 236734 to 237334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,330 DEBUG Processing 685/1020 atomic regions from SNP 205222 to 205822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,333 DEBUG Processing 660/1130 atomic regions from SNP 197893 to 198493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,468 DEBUG Processing 813/855 atomic regions from SNP 243677 to 244277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,540 DEBUG Processing 571/646 atomic regions from SNP 171153 to 171753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,565 DEBUG Processing 791/899 atomic regions from SNP 237034 to 237634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,627 DEBUG Processing 661/1130 atomic regions from SNP 198193 to 198793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,640 DEBUG Processing 686/1020 atomic regions from SNP 205522 to 206122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,726 DEBUG Processing 814/855 atomic regions from SNP 243977 to 244577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:55,807 DEBUG Processing 572/646 atomic regions from SNP 171453 to 172053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,829 DEBUG Processing 792/899 atomic regions from SNP 237334 to 237934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,922 DEBUG Processing 662/1130 atomic regions from SNP 198493 to 199093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,944 DEBUG Processing 687/1020 atomic regions from SNP 205822 to 206422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,992 DEBUG Processing 815/855 atomic regions from SNP 244277 to 244877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,082 DEBUG Processing 573/646 atomic regions from SNP 171753 to 172353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,107 DEBUG Processing 793/899 atomic regions from SNP 237634 to 238234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,219 DEBUG Processing 663/1130 atomic regions from SNP 198793 to 199393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,253 DEBUG Processing 688/1020 atomic regions from SNP 206122 to 206722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,272 DEBUG Processing 816/855 atomic regions from SNP 244577 to 245177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,349 DEBUG Processing 574/646 atomic regions from SNP 172053 to 172653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,376 DEBUG Processing 794/899 atomic regions from SNP 237934 to 238534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,510 DEBUG Processing 664/1130 atomic regions from SNP 199093 to 199693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,551 DEBUG Processing 689/1020 atomic regions from SNP 206422 to 207022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,562 DEBUG Processing 817/855 atomic regions from SNP 244877 to 245477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,618 DEBUG Processing 575/646 atomic regions from SNP 172353 to 172953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,645 DEBUG Processing 795/899 atomic regions from SNP 238234 to 238834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,798 DEBUG Processing 665/1130 atomic regions from SNP 199393 to 199993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,839 DEBUG Processing 690/1020 atomic regions from SNP 206722 to 207322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,853 DEBUG Processing 818/855 atomic regions from SNP 245177 to 245777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:56,883 DEBUG Processing 576/646 atomic regions from SNP 172653 to 173253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,915 DEBUG Processing 796/899 atomic regions from SNP 238534 to 239134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,090 DEBUG Processing 666/1130 atomic regions from SNP 199693 to 200293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,118 DEBUG Processing 819/855 atomic regions from SNP 245477 to 246077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,148 DEBUG Processing 691/1020 atomic regions from SNP 207022 to 207622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,148 DEBUG Processing 577/646 atomic regions from SNP 172953 to 173553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,182 DEBUG Processing 797/899 atomic regions from SNP 238834 to 239434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,386 DEBUG Processing 820/855 atomic regions from SNP 245777 to 246377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,391 DEBUG Processing 667/1130 atomic regions from SNP 199993 to 200593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,426 DEBUG Processing 578/646 atomic regions from SNP 173253 to 173853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,457 DEBUG Processing 798/899 atomic regions from SNP 239134 to 239734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,464 DEBUG Processing 692/1020 atomic regions from SNP 207322 to 207922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,652 DEBUG Processing 821/855 atomic regions from SNP 246077 to 246677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,687 DEBUG Processing 579/646 atomic regions from SNP 173553 to 174153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,696 DEBUG Processing 668/1130 atomic regions from SNP 200293 to 200893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,720 DEBUG Processing 799/899 atomic regions from SNP 239434 to 240034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,758 DEBUG Processing 693/1020 atomic regions from SNP 207622 to 208222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,918 DEBUG Processing 822/855 atomic regions from SNP 246377 to 246977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:57,950 DEBUG Processing 580/646 atomic regions from SNP 173853 to 174453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,987 DEBUG Processing 800/899 atomic regions from SNP 239734 to 240334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,029 DEBUG Processing 669/1130 atomic regions from SNP 200593 to 201193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,073 DEBUG Processing 694/1020 atomic regions from SNP 207922 to 208522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,204 DEBUG Processing 823/855 atomic regions from SNP 246677 to 247277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,216 DEBUG Processing 581/646 atomic regions from SNP 174153 to 174753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,252 DEBUG Processing 801/899 atomic regions from SNP 240034 to 240634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,337 DEBUG Processing 670/1130 atomic regions from SNP 200893 to 201493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,371 DEBUG Processing 695/1020 atomic regions from SNP 208222 to 208822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,477 DEBUG Processing 824/855 atomic regions from SNP 246977 to 247577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,482 DEBUG Processing 582/646 atomic regions from SNP 174453 to 175053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,516 DEBUG Processing 802/899 atomic regions from SNP 240334 to 240934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,631 DEBUG Processing 671/1130 atomic regions from SNP 201193 to 201793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,678 DEBUG Processing 696/1020 atomic regions from SNP 208522 to 209122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,741 DEBUG Processing 825/855 atomic regions from SNP 247277 to 247877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:58,749 DEBUG Processing 583/646 atomic regions from SNP 174753 to 175353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,783 DEBUG Processing 803/899 atomic regions from SNP 240634 to 241234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,914 DEBUG Processing 672/1130 atomic regions from SNP 201493 to 202093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,986 DEBUG Processing 697/1020 atomic regions from SNP 208822 to 209422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,011 DEBUG Processing 584/646 atomic regions from SNP 175053 to 175653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,017 DEBUG Processing 826/855 atomic regions from SNP 247577 to 248177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,052 DEBUG Processing 804/899 atomic regions from SNP 240934 to 241534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,200 DEBUG Processing 673/1130 atomic regions from SNP 201793 to 202393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,274 DEBUG Processing 585/646 atomic regions from SNP 175353 to 175953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,274 DEBUG Processing 698/1020 atomic regions from SNP 209122 to 209722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,302 DEBUG Processing 827/855 atomic regions from SNP 247877 to 248477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,315 DEBUG Processing 805/899 atomic regions from SNP 241234 to 241834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,497 DEBUG Processing 674/1130 atomic regions from SNP 202093 to 202693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,540 DEBUG Processing 586/646 atomic regions from SNP 175653 to 176253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,565 DEBUG Processing 699/1020 atomic regions from SNP 209422 to 210022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,582 DEBUG Processing 806/899 atomic regions from SNP 241534 to 242134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,586 DEBUG Processing 828/855 atomic regions from SNP 248177 to 248777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,805 DEBUG Processing 675/1130 atomic regions from SNP 202393 to 202993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,822 DEBUG Processing 587/646 atomic regions from SNP 175953 to 176553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:59,849 DEBUG Processing 829/855 atomic regions from SNP 248477 to 249077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:59,851 DEBUG Processing 807/899 atomic regions from SNP 241834 to 242434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,860 DEBUG Processing 700/1020 atomic regions from SNP 209722 to 210322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,103 DEBUG Processing 588/646 atomic regions from SNP 176253 to 176853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,116 DEBUG Processing 808/899 atomic regions from SNP 242134 to 242734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,122 DEBUG Processing 830/855 atomic regions from SNP 248777 to 249377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,131 DEBUG Processing 676/1130 atomic regions from SNP 202693 to 203293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,176 DEBUG Processing 701/1020 atomic regions from SNP 210022 to 210622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,385 DEBUG Processing 809/899 atomic regions from SNP 242434 to 243034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,392 DEBUG Processing 831/855 atomic regions from SNP 249077 to 249677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,395 DEBUG Processing 589/646 atomic regions from SNP 176553 to 177153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,460 DEBUG Processing 677/1130 atomic regions from SNP 202993 to 203593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,504 DEBUG Processing 702/1020 atomic regions from SNP 210322 to 210922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,658 DEBUG Processing 810/899 atomic regions from SNP 242734 to 243334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,673 DEBUG Processing 832/855 atomic regions from SNP 249377 to 249977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:00,674 DEBUG Processing 590/646 atomic regions from SNP 176853 to 177453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,772 DEBUG Processing 678/1130 atomic regions from SNP 203293 to 203893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,799 DEBUG Processing 703/1020 atomic regions from SNP 210622 to 211222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,919 DEBUG Processing 811/899 atomic regions from SNP 243034 to 243634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,939 DEBUG Processing 591/646 atomic regions from SNP 177153 to 177753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:00,953 DEBUG Processing 833/855 atomic regions from SNP 249677 to 250277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,086 DEBUG Processing 704/1020 atomic regions from SNP 210922 to 211522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,098 DEBUG Processing 679/1130 atomic regions from SNP 203593 to 204193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,179 DEBUG Processing 812/899 atomic regions from SNP 243334 to 243934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,195 DEBUG Processing 592/646 atomic regions from SNP 177453 to 178053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,213 DEBUG Processing 834/855 atomic regions from SNP 249977 to 250577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,371 DEBUG Processing 705/1020 atomic regions from SNP 211222 to 211822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,420 DEBUG Processing 680/1130 atomic regions from SNP 203893 to 204493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,446 DEBUG Processing 813/899 atomic regions from SNP 243634 to 244234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,455 DEBUG Processing 593/646 atomic regions from SNP 177753 to 178353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,466 DEBUG Processing 835/855 atomic regions from SNP 250277 to 250877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,650 DEBUG Processing 706/1020 atomic regions from SNP 211522 to 212122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,716 DEBUG Processing 814/899 atomic regions from SNP 243934 to 244534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,718 DEBUG Processing 594/646 atomic regions from SNP 178053 to 178653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:01,739 DEBUG Processing 836/855 atomic regions from SNP 250577 to 251177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:01,745 DEBUG Processing 681/1130 atomic regions from SNP 204193 to 204793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,931 DEBUG Processing 707/1020 atomic regions from SNP 211822 to 212422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,993 DEBUG Processing 815/899 atomic regions from SNP 244234 to 244834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,011 DEBUG Processing 595/646 atomic regions from SNP 178353 to 178953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,016 DEBUG Processing 837/855 atomic regions from SNP 250877 to 251477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,046 DEBUG Processing 682/1130 atomic regions from SNP 204493 to 205093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,210 DEBUG Processing 708/1020 atomic regions from SNP 212122 to 212722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,272 DEBUG Processing 816/899 atomic regions from SNP 244534 to 245134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,300 DEBUG Processing 838/855 atomic regions from SNP 251177 to 251777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,321 DEBUG Processing 596/646 atomic regions from SNP 178653 to 179253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,355 DEBUG Processing 683/1130 atomic regions from SNP 204793 to 205393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,497 DEBUG Processing 709/1020 atomic regions from SNP 212422 to 213022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,540 DEBUG Processing 817/899 atomic regions from SNP 244834 to 245434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,579 DEBUG Processing 839/855 atomic regions from SNP 251477 to 252077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,613 DEBUG Processing 597/646 atomic regions from SNP 178953 to 179553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,656 DEBUG Processing 684/1130 atomic regions from SNP 205093 to 205693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,776 DEBUG Processing 710/1020 atomic regions from SNP 212722 to 213322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,800 DEBUG Processing 818/899 atomic regions from SNP 245134 to 245734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,868 DEBUG Processing 840/855 atomic regions from SNP 251777 to 252377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:02,904 DEBUG Processing 598/646 atomic regions from SNP 179253 to 179853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:02,956 DEBUG Processing 685/1130 atomic regions from SNP 205393 to 205993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,063 DEBUG Processing 711/1020 atomic regions from SNP 213022 to 213622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,064 DEBUG Processing 819/899 atomic regions from SNP 245434 to 246034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,169 DEBUG Processing 841/855 atomic regions from SNP 252077 to 252677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,197 DEBUG Processing 599/646 atomic regions from SNP 179553 to 180153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,254 DEBUG Processing 686/1130 atomic regions from SNP 205693 to 206293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,329 DEBUG Processing 820/899 atomic regions from SNP 245734 to 246334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,346 DEBUG Processing 712/1020 atomic regions from SNP 213322 to 213922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,458 DEBUG Processing 842/855 atomic regions from SNP 252377 to 252977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,491 DEBUG Processing 600/646 atomic regions from SNP 179853 to 180453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,553 DEBUG Processing 687/1130 atomic regions from SNP 205993 to 206593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,599 DEBUG Processing 821/899 atomic regions from SNP 246034 to 246634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,632 DEBUG Processing 713/1020 atomic regions from SNP 213622 to 214222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,722 DEBUG Processing 843/855 atomic regions from SNP 252677 to 253277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:03,789 DEBUG Processing 601/646 atomic regions from SNP 180153 to 180753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:03,861 DEBUG Processing 688/1130 atomic regions from SNP 206293 to 206893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,869 DEBUG Processing 822/899 atomic regions from SNP 246334 to 246934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:03,926 DEBUG Processing 714/1020 atomic regions from SNP 213922 to 214522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,006 DEBUG Processing 844/855 atomic regions from SNP 252977 to 253577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,085 DEBUG Processing 602/646 atomic regions from SNP 180453 to 181053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,137 DEBUG Processing 823/899 atomic regions from SNP 246634 to 247234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,158 DEBUG Processing 689/1130 atomic regions from SNP 206593 to 207193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,218 DEBUG Processing 715/1020 atomic regions from SNP 214222 to 214822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,279 DEBUG Processing 845/855 atomic regions from SNP 253277 to 253877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,375 DEBUG Processing 603/646 atomic regions from SNP 180753 to 181353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,406 DEBUG Processing 824/899 atomic regions from SNP 246934 to 247534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,457 DEBUG Processing 690/1130 atomic regions from SNP 206893 to 207493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,511 DEBUG Processing 716/1020 atomic regions from SNP 214522 to 215122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,536 DEBUG Processing 846/855 atomic regions from SNP 253577 to 254177 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,651 DEBUG Processing 604/646 atomic regions from SNP 181053 to 181653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,680 DEBUG Processing 825/899 atomic regions from SNP 247234 to 247834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:04,754 DEBUG Processing 691/1130 atomic regions from SNP 207193 to 207793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,796 DEBUG Processing 847/855 atomic regions from SNP 253877 to 254477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:04,803 DEBUG Processing 717/1020 atomic regions from SNP 214822 to 215422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,940 DEBUG Processing 605/646 atomic regions from SNP 181353 to 181953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:04,948 DEBUG Processing 826/899 atomic regions from SNP 247534 to 248134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,055 DEBUG Processing 692/1130 atomic regions from SNP 207493 to 208093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,074 DEBUG Processing 848/855 atomic regions from SNP 254177 to 254777 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,098 DEBUG Processing 718/1020 atomic regions from SNP 215122 to 215722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,207 DEBUG Processing 827/899 atomic regions from SNP 247834 to 248434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,227 DEBUG Processing 606/646 atomic regions from SNP 181653 to 182253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,340 DEBUG Processing 849/855 atomic regions from SNP 254477 to 255077 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,354 DEBUG Processing 693/1130 atomic regions from SNP 207793 to 208393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,394 DEBUG Processing 719/1020 atomic regions from SNP 215422 to 216022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,473 DEBUG Processing 828/899 atomic regions from SNP 248134 to 248734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,516 DEBUG Processing 607/646 atomic regions from SNP 181953 to 182553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,614 DEBUG Processing 850/855 atomic regions from SNP 254777 to 255377 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,658 DEBUG Processing 694/1130 atomic regions from SNP 208093 to 208693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,692 DEBUG Processing 720/1020 atomic regions from SNP 215722 to 216322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,745 DEBUG Processing 829/899 atomic regions from SNP 248434 to 249034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:05,811 DEBUG Processing 608/646 atomic regions from SNP 182253 to 182853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:05,871 DEBUG Processing 851/855 atomic regions from SNP 255077 to 255677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:05,956 DEBUG Processing 695/1130 atomic regions from SNP 208393 to 208993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,997 DEBUG Processing 721/1020 atomic regions from SNP 216022 to 216622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,015 DEBUG Processing 830/899 atomic regions from SNP 248734 to 249334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,111 DEBUG Processing 609/646 atomic regions from SNP 182553 to 183153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,125 DEBUG Processing 852/855 atomic regions from SNP 255377 to 255977 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,251 DEBUG Processing 696/1130 atomic regions from SNP 208693 to 209293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,284 DEBUG Processing 831/899 atomic regions from SNP 249034 to 249634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,309 DEBUG Processing 722/1020 atomic regions from SNP 216322 to 216922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,390 DEBUG Processing 853/855 atomic regions from SNP 255677 to 256277 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,413 DEBUG Processing 610/646 atomic regions from SNP 182853 to 183453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,545 DEBUG Processing 697/1130 atomic regions from SNP 208993 to 209593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,549 DEBUG Processing 832/899 atomic regions from SNP 249334 to 249934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,602 DEBUG Processing 723/1020 atomic regions from SNP 216622 to 217222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,659 DEBUG Processing 854/855 atomic regions from SNP 255977 to 256577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:06,696 DEBUG Processing 611/646 atomic regions from SNP 183153 to 183753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:06,814 DEBUG Processing 833/899 atomic regions from SNP 249634 to 250234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:06,840 DEBUG Processing 698/1130 atomic regions from SNP 209293 to 209893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,911 DEBUG Processing 724/1020 atomic regions from SNP 216922 to 217522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,923 DEBUG Processing 855/855 atomic regions from SNP 256277 to 256877 for chr5 (subchromosome 1 of 1). 2025-01-31 09:48:07,009 DEBUG Processing 612/646 atomic regions from SNP 183453 to 184053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,076 DEBUG Unique SNPs positions in subchromosome 1: 256878 2025-01-31 09:48:07,082 DEBUG Processing 834/899 atomic regions from SNP 249934 to 250534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,133 DEBUG Processing 699/1130 atomic regions from SNP 209593 to 210193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,205 DEBUG Processing 725/1020 atomic regions from SNP 217222 to 217822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,296 DEBUG Processing 613/646 atomic regions from SNP 183753 to 184353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,350 DEBUG Processing 835/899 atomic regions from SNP 250234 to 250834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,423 DEBUG Processing 700/1130 atomic regions from SNP 209893 to 210493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,500 DEBUG Processing 726/1020 atomic regions from SNP 217522 to 218122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,588 DEBUG Processing 614/646 atomic regions from SNP 184053 to 184653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,620 DEBUG Processing 836/899 atomic regions from SNP 250534 to 251134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:07,716 DEBUG Processing 701/1130 atomic regions from SNP 210193 to 210793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,796 DEBUG Processing 727/1020 atomic regions from SNP 217822 to 218422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,876 DEBUG Processing 615/646 atomic regions from SNP 184353 to 184953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:07,885 DEBUG Processing 837/899 atomic regions from SNP 250834 to 251434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,012 DEBUG Processing 702/1130 atomic regions from SNP 210493 to 211093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,100 DEBUG Processing 728/1020 atomic regions from SNP 218122 to 218722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,144 DEBUG Processing 616/646 atomic regions from SNP 184653 to 185253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,150 DEBUG Processing 838/899 atomic regions from SNP 251134 to 251734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,299 DEBUG Processing 703/1130 atomic regions from SNP 210793 to 211393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,403 DEBUG Processing 729/1020 atomic regions from SNP 218422 to 219022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,413 DEBUG Processing 617/646 atomic regions from SNP 184953 to 185553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,417 DEBUG Processing 839/899 atomic regions from SNP 251434 to 252034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,586 DEBUG Processing 704/1130 atomic regions from SNP 211093 to 211693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,686 DEBUG Processing 618/646 atomic regions from SNP 185253 to 185853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:08,686 DEBUG Processing 840/899 atomic regions from SNP 251734 to 252334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,713 DEBUG Processing 730/1020 atomic regions from SNP 218722 to 219322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,879 DEBUG Processing 705/1130 atomic regions from SNP 211393 to 211993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,956 DEBUG Processing 841/899 atomic regions from SNP 252034 to 252634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:08,956 DEBUG Processing 619/646 atomic regions from SNP 185553 to 186153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,032 DEBUG Processing 731/1020 atomic regions from SNP 219022 to 219622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,162 DEBUG Processing 706/1130 atomic regions from SNP 211693 to 212293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,222 DEBUG Processing 842/899 atomic regions from SNP 252334 to 252934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,252 DEBUG Processing 620/646 atomic regions from SNP 185853 to 186453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,355 DEBUG Processing 732/1020 atomic regions from SNP 219322 to 219922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,456 DEBUG Processing 707/1130 atomic regions from SNP 211993 to 212593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,493 DEBUG Processing 843/899 atomic regions from SNP 252634 to 253234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,566 DEBUG Processing 621/646 atomic regions from SNP 186153 to 186753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:09,694 DEBUG Processing 733/1020 atomic regions from SNP 219622 to 220222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,761 DEBUG Processing 844/899 atomic regions from SNP 252934 to 253534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:09,767 DEBUG Processing 708/1130 atomic regions from SNP 212293 to 212893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,866 DEBUG Processing 622/646 atomic regions from SNP 186453 to 187053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,002 DEBUG Processing 734/1020 atomic regions from SNP 219922 to 220522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,027 DEBUG Processing 845/899 atomic regions from SNP 253234 to 253834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,059 DEBUG Processing 709/1130 atomic regions from SNP 212593 to 213193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,156 DEBUG Processing 623/646 atomic regions from SNP 186753 to 187353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,291 DEBUG Processing 846/899 atomic regions from SNP 253534 to 254134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,292 DEBUG Processing 735/1020 atomic regions from SNP 220222 to 220822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,351 DEBUG Processing 710/1130 atomic regions from SNP 212893 to 213493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,421 DEBUG Processing 624/646 atomic regions from SNP 187053 to 187653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,572 DEBUG Processing 847/899 atomic regions from SNP 253834 to 254434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,605 DEBUG Processing 736/1020 atomic regions from SNP 220522 to 221122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,657 DEBUG Processing 711/1130 atomic regions from SNP 213193 to 213793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,695 DEBUG Processing 625/646 atomic regions from SNP 187353 to 187953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:10,843 DEBUG Processing 848/899 atomic regions from SNP 254134 to 254734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:10,926 DEBUG Processing 737/1020 atomic regions from SNP 220822 to 221422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,966 DEBUG Processing 712/1130 atomic regions from SNP 213493 to 214093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,966 DEBUG Processing 626/646 atomic regions from SNP 187653 to 188253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,115 DEBUG Processing 849/899 atomic regions from SNP 254434 to 255034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,245 DEBUG Processing 627/646 atomic regions from SNP 187953 to 188553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,248 DEBUG Processing 738/1020 atomic regions from SNP 221122 to 221722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,268 DEBUG Processing 713/1130 atomic regions from SNP 213793 to 214393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,376 DEBUG Processing 850/899 atomic regions from SNP 254734 to 255334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,516 DEBUG Processing 628/646 atomic regions from SNP 188253 to 188853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,566 DEBUG Processing 714/1130 atomic regions from SNP 214093 to 214693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,567 DEBUG Processing 739/1020 atomic regions from SNP 221422 to 222022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,636 DEBUG Processing 851/899 atomic regions from SNP 255034 to 255634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:11,790 DEBUG Processing 629/646 atomic regions from SNP 188553 to 189153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:11,867 DEBUG Processing 740/1020 atomic regions from SNP 221722 to 222322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,869 DEBUG Processing 715/1130 atomic regions from SNP 214393 to 214993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,903 DEBUG Processing 852/899 atomic regions from SNP 255334 to 255934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,074 DEBUG Processing 630/646 atomic regions from SNP 188853 to 189453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,178 DEBUG Processing 853/899 atomic regions from SNP 255634 to 256234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,179 DEBUG Processing 716/1130 atomic regions from SNP 214693 to 215293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,183 DEBUG Processing 741/1020 atomic regions from SNP 222022 to 222622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,337 DEBUG Processing 631/646 atomic regions from SNP 189153 to 189753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,453 DEBUG Processing 854/899 atomic regions from SNP 255934 to 256534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,490 DEBUG Processing 717/1130 atomic regions from SNP 214993 to 215593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,503 DEBUG Processing 742/1020 atomic regions from SNP 222322 to 222922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,595 DEBUG Processing 632/646 atomic regions from SNP 189453 to 190053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:12,736 DEBUG Processing 855/899 atomic regions from SNP 256234 to 256834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:12,797 DEBUG Processing 718/1130 atomic regions from SNP 215293 to 215893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,827 DEBUG Processing 743/1020 atomic regions from SNP 222622 to 223222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,884 DEBUG Processing 633/646 atomic regions from SNP 189753 to 190353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,011 DEBUG Processing 856/899 atomic regions from SNP 256534 to 257134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,094 DEBUG Processing 719/1130 atomic regions from SNP 215593 to 216193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,140 DEBUG Processing 744/1020 atomic regions from SNP 222922 to 223522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,187 DEBUG Processing 634/646 atomic regions from SNP 190053 to 190653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,301 DEBUG Processing 857/899 atomic regions from SNP 256834 to 257434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,397 DEBUG Processing 720/1130 atomic regions from SNP 215893 to 216493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,437 DEBUG Processing 745/1020 atomic regions from SNP 223222 to 223822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,489 DEBUG Processing 635/646 atomic regions from SNP 190353 to 190953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,569 DEBUG Processing 858/899 atomic regions from SNP 257134 to 257734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,695 DEBUG Processing 721/1130 atomic regions from SNP 216193 to 216793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,725 DEBUG Processing 746/1020 atomic regions from SNP 223522 to 224122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,780 DEBUG Processing 636/646 atomic regions from SNP 190653 to 191253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:13,837 DEBUG Processing 859/899 atomic regions from SNP 257434 to 258034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:13,995 DEBUG Processing 722/1130 atomic regions from SNP 216493 to 217093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,017 DEBUG Processing 747/1020 atomic regions from SNP 223822 to 224422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,079 DEBUG Processing 637/646 atomic regions from SNP 190953 to 191553 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,108 DEBUG Processing 860/899 atomic regions from SNP 257734 to 258334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,291 DEBUG Processing 723/1130 atomic regions from SNP 216793 to 217393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,307 DEBUG Processing 748/1020 atomic regions from SNP 224122 to 224722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,371 DEBUG Processing 638/646 atomic regions from SNP 191253 to 191853 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,375 DEBUG Processing 861/899 atomic regions from SNP 258034 to 258634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,583 DEBUG Processing 724/1130 atomic regions from SNP 217093 to 217693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,596 DEBUG Processing 749/1020 atomic regions from SNP 224422 to 225022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,649 DEBUG Processing 862/899 atomic regions from SNP 258334 to 258934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:14,677 DEBUG Processing 639/646 atomic regions from SNP 191553 to 192153 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:14,886 DEBUG Processing 725/1130 atomic regions from SNP 217393 to 217993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,911 DEBUG Processing 750/1020 atomic regions from SNP 224722 to 225322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,919 DEBUG Processing 863/899 atomic regions from SNP 258634 to 259234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,004 DEBUG Processing 640/646 atomic regions from SNP 191853 to 192453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,205 DEBUG Processing 864/899 atomic regions from SNP 258934 to 259534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,214 DEBUG Processing 726/1130 atomic regions from SNP 217693 to 218293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,238 DEBUG Processing 751/1020 atomic regions from SNP 225022 to 225622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,306 DEBUG Processing 641/646 atomic regions from SNP 192153 to 192753 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,473 DEBUG Processing 865/899 atomic regions from SNP 259234 to 259834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,521 DEBUG Processing 727/1130 atomic regions from SNP 217993 to 218593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,551 DEBUG Processing 752/1020 atomic regions from SNP 225322 to 225922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,604 DEBUG Processing 642/646 atomic regions from SNP 192453 to 193053 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:15,743 DEBUG Processing 866/899 atomic regions from SNP 259534 to 260134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:15,846 DEBUG Processing 728/1130 atomic regions from SNP 218293 to 218893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,862 DEBUG Processing 753/1020 atomic regions from SNP 225622 to 226222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,908 DEBUG Processing 643/646 atomic regions from SNP 192753 to 193353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,015 DEBUG Processing 867/899 atomic regions from SNP 259834 to 260434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,156 DEBUG Processing 729/1130 atomic regions from SNP 218593 to 219193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,159 DEBUG Processing 754/1020 atomic regions from SNP 225922 to 226522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,219 DEBUG Processing 644/646 atomic regions from SNP 193053 to 193653 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,291 DEBUG Processing 868/899 atomic regions from SNP 260134 to 260734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,460 DEBUG Processing 730/1130 atomic regions from SNP 218893 to 219493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,485 DEBUG Processing 755/1020 atomic regions from SNP 226222 to 226822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,521 DEBUG Processing 645/646 atomic regions from SNP 193353 to 193953 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,570 DEBUG Processing 869/899 atomic regions from SNP 260434 to 261034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,751 DEBUG Processing 731/1130 atomic regions from SNP 219193 to 219793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,807 DEBUG Processing 756/1020 atomic regions from SNP 226522 to 227122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,820 DEBUG Processing 646/646 atomic regions from SNP 193653 to 194253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:48:16,841 DEBUG Processing 870/899 atomic regions from SNP 260734 to 261334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:16,997 DEBUG Unique SNPs positions in subchromosome 2: 194254 2025-01-31 09:48:17,050 DEBUG Processing 732/1130 atomic regions from SNP 219493 to 220093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,107 DEBUG Processing 757/1020 atomic regions from SNP 226822 to 227422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,108 DEBUG Processing 871/899 atomic regions from SNP 261034 to 261634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,346 DEBUG Processing 733/1130 atomic regions from SNP 219793 to 220393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,376 DEBUG Processing 872/899 atomic regions from SNP 261334 to 261934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,416 DEBUG Processing 758/1020 atomic regions from SNP 227122 to 227722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,647 DEBUG Processing 873/899 atomic regions from SNP 261634 to 262234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,647 DEBUG Processing 734/1130 atomic regions from SNP 220093 to 220693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,704 DEBUG Processing 759/1020 atomic regions from SNP 227422 to 228022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,918 DEBUG Processing 874/899 atomic regions from SNP 261934 to 262534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:17,948 DEBUG Processing 735/1130 atomic regions from SNP 220393 to 220993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,002 DEBUG Processing 760/1020 atomic regions from SNP 227722 to 228322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,187 DEBUG Processing 875/899 atomic regions from SNP 262234 to 262834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,250 DEBUG Processing 736/1130 atomic regions from SNP 220693 to 221293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,304 DEBUG Processing 761/1020 atomic regions from SNP 228022 to 228622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,455 DEBUG Processing 876/899 atomic regions from SNP 262534 to 263134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,546 DEBUG Processing 737/1130 atomic regions from SNP 220993 to 221593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,614 DEBUG Processing 762/1020 atomic regions from SNP 228322 to 228922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,726 DEBUG Processing 877/899 atomic regions from SNP 262834 to 263434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:18,839 DEBUG Processing 738/1130 atomic regions from SNP 221293 to 221893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,923 DEBUG Processing 763/1020 atomic regions from SNP 228622 to 229222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,995 DEBUG Processing 878/899 atomic regions from SNP 263134 to 263734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,129 DEBUG Processing 739/1130 atomic regions from SNP 221593 to 222193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,225 DEBUG Processing 764/1020 atomic regions from SNP 228922 to 229522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,269 DEBUG Processing 879/899 atomic regions from SNP 263434 to 264034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,419 DEBUG Processing 740/1130 atomic regions from SNP 221893 to 222493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,525 DEBUG Processing 765/1020 atomic regions from SNP 229222 to 229822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,539 DEBUG Processing 880/899 atomic regions from SNP 263734 to 264334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,711 DEBUG Processing 741/1130 atomic regions from SNP 222193 to 222793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,823 DEBUG Processing 881/899 atomic regions from SNP 264034 to 264634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:19,826 DEBUG Processing 766/1020 atomic regions from SNP 229522 to 230122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,010 DEBUG Processing 742/1130 atomic regions from SNP 222493 to 223093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,096 DEBUG Processing 882/899 atomic regions from SNP 264334 to 264934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,115 DEBUG Processing 767/1020 atomic regions from SNP 229822 to 230422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,332 DEBUG Processing 743/1130 atomic regions from SNP 222793 to 223393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,385 DEBUG Processing 883/899 atomic regions from SNP 264634 to 265234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,408 DEBUG Processing 768/1020 atomic regions from SNP 230122 to 230722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,657 DEBUG Processing 744/1130 atomic regions from SNP 223093 to 223693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,662 DEBUG Processing 884/899 atomic regions from SNP 264934 to 265534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,704 DEBUG Processing 769/1020 atomic regions from SNP 230422 to 231022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,940 DEBUG Processing 885/899 atomic regions from SNP 265234 to 265834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:20,981 DEBUG Processing 745/1130 atomic regions from SNP 223393 to 223993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,993 DEBUG Processing 770/1020 atomic regions from SNP 230722 to 231322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,207 DEBUG Processing 886/899 atomic regions from SNP 265534 to 266134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,285 DEBUG Processing 771/1020 atomic regions from SNP 231022 to 231622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,312 DEBUG Processing 746/1130 atomic regions from SNP 223693 to 224293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,475 DEBUG Processing 887/899 atomic regions from SNP 265834 to 266434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,573 DEBUG Processing 772/1020 atomic regions from SNP 231322 to 231922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,633 DEBUG Processing 747/1130 atomic regions from SNP 223993 to 224593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,741 DEBUG Processing 888/899 atomic regions from SNP 266134 to 266734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:21,863 DEBUG Processing 773/1020 atomic regions from SNP 231622 to 232222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,957 DEBUG Processing 748/1130 atomic regions from SNP 224293 to 224893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,012 DEBUG Processing 889/899 atomic regions from SNP 266434 to 267034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,151 DEBUG Processing 774/1020 atomic regions from SNP 231922 to 232522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,272 DEBUG Processing 749/1130 atomic regions from SNP 224593 to 225193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,280 DEBUG Processing 890/899 atomic regions from SNP 266734 to 267334 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,446 DEBUG Processing 775/1020 atomic regions from SNP 232222 to 232822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,551 DEBUG Processing 891/899 atomic regions from SNP 267034 to 267634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,592 DEBUG Processing 750/1130 atomic regions from SNP 224893 to 225493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,742 DEBUG Processing 776/1020 atomic regions from SNP 232522 to 233122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,821 DEBUG Processing 892/899 atomic regions from SNP 267334 to 267934 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:22,915 DEBUG Processing 751/1130 atomic regions from SNP 225193 to 225793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,038 DEBUG Processing 777/1020 atomic regions from SNP 232822 to 233422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,083 DEBUG Processing 893/899 atomic regions from SNP 267634 to 268234 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,241 DEBUG Processing 752/1130 atomic regions from SNP 225493 to 226093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,334 DEBUG Processing 778/1020 atomic regions from SNP 233122 to 233722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,352 DEBUG Processing 894/899 atomic regions from SNP 267934 to 268534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,578 DEBUG Processing 753/1130 atomic regions from SNP 225793 to 226393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,623 DEBUG Processing 895/899 atomic regions from SNP 268234 to 268834 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,632 DEBUG Processing 779/1020 atomic regions from SNP 233422 to 234022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,900 DEBUG Processing 896/899 atomic regions from SNP 268534 to 269134 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:23,919 DEBUG Processing 754/1130 atomic regions from SNP 226093 to 226693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,929 DEBUG Processing 780/1020 atomic regions from SNP 233722 to 234322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,174 DEBUG Processing 897/899 atomic regions from SNP 268834 to 269434 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,220 DEBUG Processing 781/1020 atomic regions from SNP 234022 to 234622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,248 DEBUG Processing 755/1130 atomic regions from SNP 226393 to 226993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,439 DEBUG Processing 898/899 atomic regions from SNP 269134 to 269734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,513 DEBUG Processing 782/1020 atomic regions from SNP 234322 to 234922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,570 DEBUG Processing 756/1130 atomic regions from SNP 226693 to 227293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,698 DEBUG Processing 899/899 atomic regions from SNP 269434 to 270034 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:24,804 DEBUG Processing 783/1020 atomic regions from SNP 234622 to 235222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,854 DEBUG Unique SNPs positions in subchromosome 1: 270035 2025-01-31 09:48:24,895 DEBUG Processing 757/1130 atomic regions from SNP 226993 to 227593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,102 DEBUG Processing 784/1020 atomic regions from SNP 234922 to 235522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,231 DEBUG Processing 758/1130 atomic regions from SNP 227293 to 227893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,395 DEBUG Processing 785/1020 atomic regions from SNP 235222 to 235822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,560 DEBUG Processing 759/1130 atomic regions from SNP 227593 to 228193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,685 DEBUG Processing 786/1020 atomic regions from SNP 235522 to 236122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,887 DEBUG Processing 760/1130 atomic regions from SNP 227893 to 228493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,976 DEBUG Processing 787/1020 atomic regions from SNP 235822 to 236422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,195 DEBUG Processing 761/1130 atomic regions from SNP 228193 to 228793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,268 DEBUG Processing 788/1020 atomic regions from SNP 236122 to 236722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,539 DEBUG Processing 762/1130 atomic regions from SNP 228493 to 229093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,566 DEBUG Processing 789/1020 atomic regions from SNP 236422 to 237022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,862 DEBUG Processing 790/1020 atomic regions from SNP 236722 to 237322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,873 DEBUG Processing 763/1130 atomic regions from SNP 228793 to 229393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,157 DEBUG Processing 791/1020 atomic regions from SNP 237022 to 237622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,205 DEBUG Processing 764/1130 atomic regions from SNP 229093 to 229693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,453 DEBUG Processing 792/1020 atomic regions from SNP 237322 to 237922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,543 DEBUG Processing 765/1130 atomic regions from SNP 229393 to 229993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,747 DEBUG Processing 793/1020 atomic regions from SNP 237622 to 238222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,884 DEBUG Processing 766/1130 atomic regions from SNP 229693 to 230293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,048 DEBUG Processing 794/1020 atomic regions from SNP 237922 to 238522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,222 DEBUG Processing 767/1130 atomic regions from SNP 229993 to 230593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,347 DEBUG Processing 795/1020 atomic regions from SNP 238222 to 238822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,551 DEBUG Processing 768/1130 atomic regions from SNP 230293 to 230893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,658 DEBUG Processing 796/1020 atomic regions from SNP 238522 to 239122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,864 DEBUG Processing 769/1130 atomic regions from SNP 230593 to 231193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,956 DEBUG Processing 797/1020 atomic regions from SNP 238822 to 239422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,166 DEBUG Processing 770/1130 atomic regions from SNP 230893 to 231493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,253 DEBUG Processing 798/1020 atomic regions from SNP 239122 to 239722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,488 DEBUG Processing 771/1130 atomic regions from SNP 231193 to 231793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,559 DEBUG Processing 799/1020 atomic regions from SNP 239422 to 240022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,805 DEBUG Processing 772/1130 atomic regions from SNP 231493 to 232093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,861 DEBUG Processing 800/1020 atomic regions from SNP 239722 to 240322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,108 DEBUG Processing 773/1130 atomic regions from SNP 231793 to 232393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,162 DEBUG Processing 801/1020 atomic regions from SNP 240022 to 240622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,424 DEBUG Processing 774/1130 atomic regions from SNP 232093 to 232693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,465 DEBUG Processing 802/1020 atomic regions from SNP 240322 to 240922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,752 DEBUG Processing 775/1130 atomic regions from SNP 232393 to 232993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,768 DEBUG Processing 803/1020 atomic regions from SNP 240622 to 241222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,082 DEBUG Processing 804/1020 atomic regions from SNP 240922 to 241522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,085 DEBUG Processing 776/1130 atomic regions from SNP 232693 to 233293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,378 DEBUG Processing 805/1020 atomic regions from SNP 241222 to 241822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,408 DEBUG Processing 777/1130 atomic regions from SNP 232993 to 233593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,669 DEBUG Processing 806/1020 atomic regions from SNP 241522 to 242122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,731 DEBUG Processing 778/1130 atomic regions from SNP 233293 to 233893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,960 DEBUG Processing 807/1020 atomic regions from SNP 241822 to 242422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,051 DEBUG Processing 779/1130 atomic regions from SNP 233593 to 234193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,256 DEBUG Processing 808/1020 atomic regions from SNP 242122 to 242722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,365 DEBUG Processing 780/1130 atomic regions from SNP 233893 to 234493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,562 DEBUG Processing 809/1020 atomic regions from SNP 242422 to 243022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,668 DEBUG Processing 781/1130 atomic regions from SNP 234193 to 234793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,861 DEBUG Processing 810/1020 atomic regions from SNP 242722 to 243322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,962 DEBUG Processing 782/1130 atomic regions from SNP 234493 to 235093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,165 DEBUG Processing 811/1020 atomic regions from SNP 243022 to 243622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,257 DEBUG Processing 783/1130 atomic regions from SNP 234793 to 235393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,457 DEBUG Processing 812/1020 atomic regions from SNP 243322 to 243922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,556 DEBUG Processing 784/1130 atomic regions from SNP 235093 to 235693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,630 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:48:33,748 DEBUG Processing 813/1020 atomic regions from SNP 243622 to 244222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,857 DEBUG Processing 785/1130 atomic regions from SNP 235393 to 235993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,048 DEBUG Processing 814/1020 atomic regions from SNP 243922 to 244522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,161 DEBUG Processing 786/1130 atomic regions from SNP 235693 to 236293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,343 DEBUG Processing 815/1020 atomic regions from SNP 244222 to 244822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,460 DEBUG Processing 787/1130 atomic regions from SNP 235993 to 236593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,648 DEBUG Processing 816/1020 atomic regions from SNP 244522 to 245122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,765 DEBUG Processing 788/1130 atomic regions from SNP 236293 to 236893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,940 DEBUG Processing 817/1020 atomic regions from SNP 244822 to 245422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,069 DEBUG Processing 789/1130 atomic regions from SNP 236593 to 237193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,227 DEBUG Processing 818/1020 atomic regions from SNP 245122 to 245722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,368 DEBUG Processing 790/1130 atomic regions from SNP 236893 to 237493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,519 DEBUG Processing 819/1020 atomic regions from SNP 245422 to 246022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,666 DEBUG Processing 791/1130 atomic regions from SNP 237193 to 237793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,811 DEBUG Processing 820/1020 atomic regions from SNP 245722 to 246322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,967 DEBUG Processing 792/1130 atomic regions from SNP 237493 to 238093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,105 DEBUG Processing 821/1020 atomic regions from SNP 246022 to 246622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,271 DEBUG Processing 793/1130 atomic regions from SNP 237793 to 238393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,398 DEBUG Processing 822/1020 atomic regions from SNP 246322 to 246922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,586 DEBUG Processing 794/1130 atomic regions from SNP 238093 to 238693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,694 DEBUG Processing 823/1020 atomic regions from SNP 246622 to 247222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,896 DEBUG Processing 795/1130 atomic regions from SNP 238393 to 238993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,979 DEBUG Processing 824/1020 atomic regions from SNP 246922 to 247522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,188 DEBUG Processing 796/1130 atomic regions from SNP 238693 to 239293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,270 DEBUG Processing 825/1020 atomic regions from SNP 247222 to 247822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,483 DEBUG Processing 797/1130 atomic regions from SNP 238993 to 239593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,563 DEBUG Processing 826/1020 atomic regions from SNP 247522 to 248122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,778 DEBUG Processing 798/1130 atomic regions from SNP 239293 to 239893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,855 DEBUG Processing 827/1020 atomic regions from SNP 247822 to 248422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,078 DEBUG Processing 799/1130 atomic regions from SNP 239593 to 240193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,153 DEBUG Processing 828/1020 atomic regions from SNP 248122 to 248722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,379 DEBUG Processing 800/1130 atomic regions from SNP 239893 to 240493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,455 DEBUG Processing 829/1020 atomic regions from SNP 248422 to 249022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,684 DEBUG Processing 801/1130 atomic regions from SNP 240193 to 240793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,751 DEBUG Processing 830/1020 atomic regions from SNP 248722 to 249322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,869 DEBUG Subchromosome time: 216.58661787596066, subchromosome SNPs: 194254 2025-01-31 09:48:38,870 DEBUG Estimated BADs: [1.62, 0.81, 1.62, 0.54, 3.24, 1.62, 0.40, 3.24, 9.71, 3.24, 1.62, 0.27, 0.81, 1.62, 0.40, 0.81, 1.62, 0.32, 0.81, 1.62, 3.24, 0.81, 0.16, 1.62, 11.33, 0.81, 3.24, 4.86, 1.62, 4.86, 3.24, 4.86] SNP counts: [3088, 5713, 13545, 27464, 1071, 3000, 8574, 3030, 514, 8370, 3856, 4187, 6947, 11131, 29429, 8701, 5381, 5131, 14200, 10099, 6902, 2739, 2947, 1915, 131, 971, 27920, 19205, 7495, 5378, 6319, 4386] SNP IDs counts: [3088, 5713, 13545, 27464, 1071, 3000, 8574, 3030, 514, 8370, 3856, 4187, 6947, 11131, 29429, 8701, 5381, 5131, 14200, 10099, 6902, 2739, 2947, 1915, 131, 971, 27920, 19205, 7495, 5378, 6319, 4386] Critical gap: 687170bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 8.52Mbp, 16.33Mbp, 32.74Mbp, 33.31Mbp, 34.98Mbp, 40.13Mbp, 41.86Mbp[0.87Mbp], 43.06Mbp, 47.53Mbp, 49.70Mbp, 52.29Mbp, 56.17Mbp, 63.98Mbp, 81.80Mbp, 86.66Mbp, 89.81Mbp, 92.92Mbp, 100.99Mbp, 106.56Mbp, 110.29Mbp, 111.91Mbp, 113.94Mbp, 115.04Mbp, 115.10Mbp, 115.78Mbp, 131.66Mbp, 141.72Mbp, 147.84Mbp, 150.66Mbp, 153.96Mbp, 156.51Mbp] 2025-01-31 09:48:38,870 DEBUG chr4 time: 216.5873388729524 s 2025-01-31 09:48:38,984 DEBUG Processing 802/1130 atomic regions from SNP 240493 to 241093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,035 DEBUG chr4: Fitting background model for 32 segments 2025-01-31 09:48:39,047 DEBUG Processing 831/1020 atomic regions from SNP 249022 to 249622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,289 DEBUG Processing 803/1130 atomic regions from SNP 240793 to 241393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,370 DEBUG Processing 832/1020 atomic regions from SNP 249322 to 249922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,586 DEBUG Processing 804/1130 atomic regions from SNP 241093 to 241693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,665 DEBUG Processing 833/1020 atomic regions from SNP 249622 to 250222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,881 DEBUG Processing 805/1130 atomic regions from SNP 241393 to 241993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,974 DEBUG Processing 834/1020 atomic regions from SNP 249922 to 250522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,175 DEBUG Processing 806/1130 atomic regions from SNP 241693 to 242293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,276 DEBUG Processing 835/1020 atomic regions from SNP 250222 to 250822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,476 DEBUG Processing 807/1130 atomic regions from SNP 241993 to 242593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,579 DEBUG Processing 836/1020 atomic regions from SNP 250522 to 251122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,773 DEBUG Processing 808/1130 atomic regions from SNP 242293 to 242893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,880 DEBUG Processing 837/1020 atomic regions from SNP 250822 to 251422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,071 DEBUG Processing 809/1130 atomic regions from SNP 242593 to 243193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,182 DEBUG Processing 838/1020 atomic regions from SNP 251122 to 251722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,366 DEBUG Processing 810/1130 atomic regions from SNP 242893 to 243493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,471 DEBUG Processing 839/1020 atomic regions from SNP 251422 to 252022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,655 DEBUG Subchromosome time: 282.2933649379993, subchromosome SNPs: 256878 2025-01-31 09:48:41,655 DEBUG Estimated BADs: [1.39, 0.46, 1.39, 5.56, 1.39, 5.56, 2.78, 0.46, 1.39, 0.46, 1.39, 0.23, 1.39, 0.28, 1.39, 0.35, 1.39, 8.34, 2.78, 0.69, 2.78, 1.39, 5.56, 2.78, 1.39, 4.17, 1.39, 5.56, 1.39, 4.17, 2.78, 1.39] SNP counts: [4906, 22533, 6127, 1107, 9358, 1714, 14718, 5995, 5686, 9026, 5730, 14946, 9308, 5116, 11389, 17841, 23230, 346, 8962, 1805, 1831, 5038, 3360, 5409, 3292, 10092, 7824, 699, 7399, 6811, 21418, 3862] SNP IDs counts: [4906, 22533, 6127, 1107, 9358, 1714, 14718, 5995, 5686, 9026, 5730, 14946, 9308, 5116, 11389, 17841, 23230, 346, 8962, 1805, 1831, 5038, 3360, 5409, 3292, 10092, 7824, 699, 7399, 6811, 21418, 3862] Critical gap: 674172bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.91Mbp, 20.87Mbp, 24.32Mbp, 24.90Mbp, 30.29Mbp, 31.24Mbp, 39.20Mbp, 42.73Mbp, 46.02Mbp, 51.21Mbp, 54.28Mbp, 63.40Mbp, 68.51Mbp, 71.61Mbp, 77.86Mbp, 88.55Mbp, 103.65Mbp, 103.83Mbp, 108.90Mbp, 110.09Mbp, 111.05Mbp, 113.73Mbp, 115.50Mbp, 118.36Mbp, 120.08Mbp, 125.48Mbp, 129.71Mbp, 130.13Mbp, 134.13Mbp, 137.79Mbp, 149.61Mbp, 151.83Mbp] 2025-01-31 09:48:41,655 DEBUG chr5 time: 282.2940169329522 s 2025-01-31 09:48:41,661 DEBUG Processing 811/1130 atomic regions from SNP 243193 to 243793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,756 DEBUG Processing 840/1020 atomic regions from SNP 251722 to 252322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,815 DEBUG chr5: Fitting background model for 32 segments 2025-01-31 09:48:41,963 DEBUG Processing 812/1130 atomic regions from SNP 243493 to 244093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,041 DEBUG Processing 841/1020 atomic regions from SNP 252022 to 252622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,266 DEBUG Processing 813/1130 atomic regions from SNP 243793 to 244393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,330 DEBUG Processing 842/1020 atomic regions from SNP 252322 to 252922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,570 DEBUG Processing 814/1130 atomic regions from SNP 244093 to 244693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,629 DEBUG Processing 843/1020 atomic regions from SNP 252622 to 253222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,857 DEBUG Processing 815/1130 atomic regions from SNP 244393 to 244993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,915 DEBUG Processing 844/1020 atomic regions from SNP 252922 to 253522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,140 DEBUG Processing 816/1130 atomic regions from SNP 244693 to 245293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,198 DEBUG Processing 845/1020 atomic regions from SNP 253222 to 253822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,434 DEBUG Processing 817/1130 atomic regions from SNP 244993 to 245593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,484 DEBUG Processing 846/1020 atomic regions from SNP 253522 to 254122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,721 DEBUG Processing 818/1130 atomic regions from SNP 245293 to 245893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,755 DEBUG Processing 847/1020 atomic regions from SNP 253822 to 254422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,018 DEBUG Processing 819/1130 atomic regions from SNP 245593 to 246193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,039 DEBUG Processing 848/1020 atomic regions from SNP 254122 to 254722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,311 DEBUG Processing 820/1130 atomic regions from SNP 245893 to 246493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,330 DEBUG Processing 849/1020 atomic regions from SNP 254422 to 255022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,635 DEBUG Processing 850/1020 atomic regions from SNP 254722 to 255322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,658 DEBUG Processing 821/1130 atomic regions from SNP 246193 to 246793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,923 DEBUG Processing 851/1020 atomic regions from SNP 255022 to 255622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,961 DEBUG Processing 822/1130 atomic regions from SNP 246493 to 247093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,203 DEBUG Processing 852/1020 atomic regions from SNP 255322 to 255922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,256 DEBUG Processing 823/1130 atomic regions from SNP 246793 to 247393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,484 DEBUG Processing 853/1020 atomic regions from SNP 255622 to 256222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,553 DEBUG Processing 824/1130 atomic regions from SNP 247093 to 247693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,751 DEBUG Processing 854/1020 atomic regions from SNP 255922 to 256522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,839 DEBUG Processing 825/1130 atomic regions from SNP 247393 to 247993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,015 DEBUG Processing 855/1020 atomic regions from SNP 256222 to 256822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,126 DEBUG Processing 826/1130 atomic regions from SNP 247693 to 248293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,283 DEBUG Processing 856/1020 atomic regions from SNP 256522 to 257122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,429 DEBUG Processing 827/1130 atomic regions from SNP 247993 to 248593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,558 DEBUG Processing 857/1020 atomic regions from SNP 256822 to 257422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,713 DEBUG Processing 828/1130 atomic regions from SNP 248293 to 248893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,835 DEBUG Processing 858/1020 atomic regions from SNP 257122 to 257722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,004 DEBUG Processing 829/1130 atomic regions from SNP 248593 to 249193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,118 DEBUG Processing 859/1020 atomic regions from SNP 257422 to 258022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,291 DEBUG Processing 830/1130 atomic regions from SNP 248893 to 249493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,402 DEBUG Processing 860/1020 atomic regions from SNP 257722 to 258322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,570 DEBUG Processing 831/1130 atomic regions from SNP 249193 to 249793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,688 DEBUG Processing 861/1020 atomic regions from SNP 258022 to 258622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,846 DEBUG Processing 832/1130 atomic regions from SNP 249493 to 250093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,971 DEBUG Processing 862/1020 atomic regions from SNP 258322 to 258922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,134 DEBUG Processing 833/1130 atomic regions from SNP 249793 to 250393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,257 DEBUG Processing 863/1020 atomic regions from SNP 258622 to 259222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,428 DEBUG Processing 834/1130 atomic regions from SNP 250093 to 250693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,540 DEBUG Processing 864/1020 atomic regions from SNP 258922 to 259522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,723 DEBUG Processing 835/1130 atomic regions from SNP 250393 to 250993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,823 DEBUG Processing 865/1020 atomic regions from SNP 259222 to 259822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,016 DEBUG Processing 836/1130 atomic regions from SNP 250693 to 251293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,105 DEBUG Processing 866/1020 atomic regions from SNP 259522 to 260122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,311 DEBUG Processing 837/1130 atomic regions from SNP 250993 to 251593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,392 DEBUG Processing 867/1020 atomic regions from SNP 259822 to 260422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,607 DEBUG Processing 838/1130 atomic regions from SNP 251293 to 251893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,690 DEBUG Processing 868/1020 atomic regions from SNP 260122 to 260722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,734 DEBUG Subchromosome time: 290.77274875401054, subchromosome SNPs: 270035 2025-01-31 09:48:49,735 DEBUG Estimated BADs: [0.56, 1.67, 0.83, 3.33, 0.83, 1.67, 0.83, 0.17, 1.67, 11.67, 1.67, 0.56, 3.33, 0.83, 3.33, 10.00, 1.67, 11.67, 3.33, 5.00, 10.00, 1.67, 0.83, 5.00, 1.67, 5.00, 1.67, 3.33, 1.67, 6.67, 1.67, 0.21, 0.83, 0.24, 1.67, 0.28, 0.83, 0.21] SNP counts: [9117, 3011, 14216, 1387, 18216, 9415, 10733, 9987, 3850, 887, 33904, 14063, 1821, 6504, 6726, 5093, 5710, 4494, 6029, 13783, 1784, 3583, 7839, 1778, 8067, 3943, 7037, 6566, 7876, 1115, 5929, 4168, 9292, 7802, 6017, 3573, 1819, 2901] SNP IDs counts: [9117, 3011, 14216, 1387, 18216, 9415, 10733, 9987, 3850, 887, 33904, 14063, 1821, 6504, 6726, 5093, 5710, 4494, 6029, 13783, 1784, 3583, 7839, 1778, 8067, 3943, 7037, 6566, 7876, 1115, 5929, 4168, 9292, 7802, 6017, 3573, 1819, 2901] Critical gap: 693865bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.56Mbp, 10.25Mbp, 19.13Mbp, 19.89Mbp, 30.59Mbp, 35.91Mbp, 42.20Mbp, 48.91Mbp, 51.15Mbp, 51.63Mbp, 71.05Mbp, 79.43Mbp, 80.46Mbp, 84.14Mbp, 87.75Mbp, 90.47Mbp, 94.34Mbp, 96.83Mbp, 100.36Mbp, 107.84Mbp, 108.77Mbp, 110.78Mbp, 115.67Mbp, 116.62Mbp, 121.16Mbp, 123.23Mbp, 127.18Mbp, 130.73Mbp, 135.27Mbp, 135.87Mbp, 139.16Mbp, 141.88Mbp, 147.04Mbp, 151.60Mbp, 154.91Mbp, 157.03Mbp, 158.05Mbp, 160.04Mbp] 2025-01-31 09:48:49,735 DEBUG chr3 time: 290.77349170902744 s 2025-01-31 09:48:49,894 DEBUG Processing 839/1130 atomic regions from SNP 251593 to 252193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,903 DEBUG chr3: Fitting background model for 38 segments 2025-01-31 09:48:49,983 DEBUG Processing 869/1020 atomic regions from SNP 260422 to 261022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,200 DEBUG Processing 840/1130 atomic regions from SNP 251893 to 252493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,274 DEBUG Processing 870/1020 atomic regions from SNP 260722 to 261322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,502 DEBUG Processing 841/1130 atomic regions from SNP 252193 to 252793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,565 DEBUG Processing 871/1020 atomic regions from SNP 261022 to 261622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,810 DEBUG Processing 842/1130 atomic regions from SNP 252493 to 253093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,852 DEBUG Processing 872/1020 atomic regions from SNP 261322 to 261922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,095 DEBUG Processing 843/1130 atomic regions from SNP 252793 to 253393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,148 DEBUG Processing 873/1020 atomic regions from SNP 261622 to 262222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,384 DEBUG Processing 844/1130 atomic regions from SNP 253093 to 253693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,444 DEBUG Processing 874/1020 atomic regions from SNP 261922 to 262522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,679 DEBUG Processing 845/1130 atomic regions from SNP 253393 to 253993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,730 DEBUG Processing 875/1020 atomic regions from SNP 262222 to 262822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,802 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:48:51,804 DEBUG chr6: Signal quantile: 0.991. signal threshold: 12. Best RMSEA: 0.011 2025-01-31 09:48:51,976 DEBUG Processing 846/1130 atomic regions from SNP 253693 to 254293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,024 DEBUG Processing 876/1020 atomic regions from SNP 262522 to 263122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,272 DEBUG Processing 847/1130 atomic regions from SNP 253993 to 254593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,318 DEBUG Processing 877/1020 atomic regions from SNP 262822 to 263422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,585 DEBUG Processing 848/1130 atomic regions from SNP 254293 to 254893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,620 DEBUG Processing 878/1020 atomic regions from SNP 263122 to 263722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,871 DEBUG Processing 849/1130 atomic regions from SNP 254593 to 255193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,922 DEBUG Processing 879/1020 atomic regions from SNP 263422 to 264022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,159 DEBUG Processing 850/1130 atomic regions from SNP 254893 to 255493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,236 DEBUG Processing 880/1020 atomic regions from SNP 263722 to 264322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,451 DEBUG Processing 851/1130 atomic regions from SNP 255193 to 255793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,547 DEBUG Processing 881/1020 atomic regions from SNP 264022 to 264622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,742 DEBUG Processing 852/1130 atomic regions from SNP 255493 to 256093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,839 DEBUG Processing 882/1020 atomic regions from SNP 264322 to 264922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,026 DEBUG Processing 853/1130 atomic regions from SNP 255793 to 256393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,146 DEBUG Processing 883/1020 atomic regions from SNP 264622 to 265222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,314 DEBUG Processing 854/1130 atomic regions from SNP 256093 to 256693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,445 DEBUG Processing 884/1020 atomic regions from SNP 264922 to 265522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,599 DEBUG Processing 855/1130 atomic regions from SNP 256393 to 256993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,618 DEBUG chr6 total SNP count: 256627 2025-01-31 09:48:54,618 DEBUG chr6 length: 149736546 2025-01-31 09:48:54,618 DEBUG ----------------------------------------- 2025-01-31 09:48:54,618 INFO Processing SNPs in chr6 2025-01-31 09:48:54,734 DEBUG Processing 885/1020 atomic regions from SNP 265222 to 265822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,877 DEBUG Processing 856/1130 atomic regions from SNP 256693 to 257293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,878 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256627)] 2025-01-31 09:48:55,018 DEBUG Processing 886/1020 atomic regions from SNP 265522 to 266122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,058 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:55,154 DEBUG Processing 857/1130 atomic regions from SNP 256993 to 257593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,313 DEBUG Processing 887/1020 atomic regions from SNP 265822 to 266422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,485 DEBUG Processing 858/1130 atomic regions from SNP 257293 to 257893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,627 DEBUG Processing 888/1020 atomic regions from SNP 266122 to 266722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,779 DEBUG Processing 859/1130 atomic regions from SNP 257593 to 258193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,935 DEBUG Processing 889/1020 atomic regions from SNP 266422 to 267022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,062 DEBUG Processing 860/1130 atomic regions from SNP 257893 to 258493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,242 DEBUG Processing 890/1020 atomic regions from SNP 266722 to 267322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,343 DEBUG Processing 861/1130 atomic regions from SNP 258193 to 258793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,515 DEBUG Processing 891/1020 atomic regions from SNP 267022 to 267622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,648 DEBUG Processing 862/1130 atomic regions from SNP 258493 to 259093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,781 DEBUG Processing 892/1020 atomic regions from SNP 267322 to 267922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,963 DEBUG Processing 863/1130 atomic regions from SNP 258793 to 259393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,069 DEBUG Processing 893/1020 atomic regions from SNP 267622 to 268222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,277 DEBUG Processing 864/1130 atomic regions from SNP 259093 to 259693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,363 DEBUG Processing 894/1020 atomic regions from SNP 267922 to 268522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,575 DEBUG Processing 865/1130 atomic regions from SNP 259393 to 259993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,663 DEBUG Processing 895/1020 atomic regions from SNP 268222 to 268822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,875 DEBUG Processing 866/1130 atomic regions from SNP 259693 to 260293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,946 DEBUG Processing 896/1020 atomic regions from SNP 268522 to 269122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,180 DEBUG Processing 867/1130 atomic regions from SNP 259993 to 260593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,233 DEBUG Processing 897/1020 atomic regions from SNP 268822 to 269422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,466 DEBUG Processing 868/1130 atomic regions from SNP 260293 to 260893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,524 DEBUG Processing 898/1020 atomic regions from SNP 269122 to 269722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,752 DEBUG Processing 869/1130 atomic regions from SNP 260593 to 261193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,819 DEBUG Processing 899/1020 atomic regions from SNP 269422 to 270022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,040 DEBUG Processing 870/1130 atomic regions from SNP 260893 to 261493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,120 DEBUG Processing 900/1020 atomic regions from SNP 269722 to 270322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,338 DEBUG Processing 871/1130 atomic regions from SNP 261193 to 261793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,425 DEBUG Processing 901/1020 atomic regions from SNP 270022 to 270622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,632 DEBUG Processing 872/1130 atomic regions from SNP 261493 to 262093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,734 DEBUG Processing 902/1020 atomic regions from SNP 270322 to 270922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,957 DEBUG Processing 873/1130 atomic regions from SNP 261793 to 262393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,044 DEBUG Processing 903/1020 atomic regions from SNP 270622 to 271222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,277 DEBUG Processing 874/1130 atomic regions from SNP 262093 to 262693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,373 DEBUG Processing 904/1020 atomic regions from SNP 270922 to 271522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,557 DEBUG Processing 875/1130 atomic regions from SNP 262393 to 262993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,675 DEBUG Processing 905/1020 atomic regions from SNP 271222 to 271822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,846 DEBUG Processing 876/1130 atomic regions from SNP 262693 to 263293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,984 DEBUG Processing 906/1020 atomic regions from SNP 271522 to 272122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,137 DEBUG Processing 877/1130 atomic regions from SNP 262993 to 263593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,309 DEBUG Processing 907/1020 atomic regions from SNP 271822 to 272422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,428 DEBUG Processing 878/1130 atomic regions from SNP 263293 to 263893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,638 DEBUG Processing 908/1020 atomic regions from SNP 272122 to 272722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,717 DEBUG Processing 879/1130 atomic regions from SNP 263593 to 264193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,959 DEBUG Processing 909/1020 atomic regions from SNP 272422 to 273022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,023 DEBUG Processing 880/1130 atomic regions from SNP 263893 to 264493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,293 DEBUG Processing 910/1020 atomic regions from SNP 272722 to 273322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,326 DEBUG Processing 881/1130 atomic regions from SNP 264193 to 264793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,613 DEBUG Processing 911/1020 atomic regions from SNP 273022 to 273622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,628 DEBUG Processing 882/1130 atomic regions from SNP 264493 to 265093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,911 DEBUG Processing 883/1130 atomic regions from SNP 264793 to 265393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,922 DEBUG Processing 912/1020 atomic regions from SNP 273322 to 273922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,188 DEBUG Processing 884/1130 atomic regions from SNP 265093 to 265693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,245 DEBUG Processing 913/1020 atomic regions from SNP 273622 to 274222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,471 DEBUG Processing 885/1130 atomic regions from SNP 265393 to 265993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,551 DEBUG Processing 914/1020 atomic regions from SNP 273922 to 274522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,763 DEBUG Processing 886/1130 atomic regions from SNP 265693 to 266293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,843 DEBUG Processing 915/1020 atomic regions from SNP 274222 to 274822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,067 DEBUG Processing 887/1130 atomic regions from SNP 265993 to 266593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,145 DEBUG Processing 916/1020 atomic regions from SNP 274522 to 275122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,394 DEBUG Processing 888/1130 atomic regions from SNP 266293 to 266893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,453 DEBUG Processing 917/1020 atomic regions from SNP 274822 to 275422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,677 DEBUG Processing 889/1130 atomic regions from SNP 266593 to 267193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,754 DEBUG Processing 918/1020 atomic regions from SNP 275122 to 275722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,967 DEBUG Processing 890/1130 atomic regions from SNP 266893 to 267493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,044 DEBUG Processing 919/1020 atomic regions from SNP 275422 to 276022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,264 DEBUG Processing 891/1130 atomic regions from SNP 267193 to 267793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,349 DEBUG Processing 920/1020 atomic regions from SNP 275722 to 276322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,569 DEBUG Processing 892/1130 atomic regions from SNP 267493 to 268093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,647 DEBUG Processing 921/1020 atomic regions from SNP 276022 to 276622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,870 DEBUG Processing 893/1130 atomic regions from SNP 267793 to 268393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,917 DEBUG Processing 922/1020 atomic regions from SNP 276322 to 276922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,180 DEBUG Processing 894/1130 atomic regions from SNP 268093 to 268693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,199 DEBUG Processing 923/1020 atomic regions from SNP 276622 to 277222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,463 DEBUG Processing 924/1020 atomic regions from SNP 276922 to 277522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,479 DEBUG Processing 895/1130 atomic regions from SNP 268393 to 268993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,724 DEBUG Processing 925/1020 atomic regions from SNP 277222 to 277822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,779 DEBUG Processing 896/1130 atomic regions from SNP 268693 to 269293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,979 DEBUG Processing 926/1020 atomic regions from SNP 277522 to 278122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,091 DEBUG Processing 897/1130 atomic regions from SNP 268993 to 269593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,243 DEBUG Processing 927/1020 atomic regions from SNP 277822 to 278422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,397 DEBUG Processing 898/1130 atomic regions from SNP 269293 to 269893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,510 DEBUG Processing 928/1020 atomic regions from SNP 278122 to 278722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,712 DEBUG Processing 899/1130 atomic regions from SNP 269593 to 270193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,784 DEBUG Processing 929/1020 atomic regions from SNP 278422 to 279022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,012 DEBUG Processing 900/1130 atomic regions from SNP 269893 to 270493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,065 DEBUG Processing 930/1020 atomic regions from SNP 278722 to 279322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,303 DEBUG Processing 901/1130 atomic regions from SNP 270193 to 270793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,343 DEBUG Processing 931/1020 atomic regions from SNP 279022 to 279622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,618 DEBUG Processing 902/1130 atomic regions from SNP 270493 to 271093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,650 DEBUG Processing 932/1020 atomic regions from SNP 279322 to 279922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,917 DEBUG Processing 903/1130 atomic regions from SNP 270793 to 271393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,945 DEBUG Processing 933/1020 atomic regions from SNP 279622 to 280222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,207 DEBUG Processing 904/1130 atomic regions from SNP 271093 to 271693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,242 DEBUG Processing 934/1020 atomic regions from SNP 279922 to 280522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,510 DEBUG Processing 905/1130 atomic regions from SNP 271393 to 271993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,525 DEBUG Processing 935/1020 atomic regions from SNP 280222 to 280822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,810 DEBUG Processing 936/1020 atomic regions from SNP 280522 to 281122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,808 DEBUG Processing 906/1130 atomic regions from SNP 271693 to 272293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,088 DEBUG Processing 937/1020 atomic regions from SNP 280822 to 281422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,109 DEBUG Processing 907/1130 atomic regions from SNP 271993 to 272593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,372 DEBUG Processing 938/1020 atomic regions from SNP 281122 to 281722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,420 DEBUG Processing 908/1130 atomic regions from SNP 272293 to 272893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,650 DEBUG Processing 939/1020 atomic regions from SNP 281422 to 282022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,724 DEBUG Processing 909/1130 atomic regions from SNP 272593 to 273193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,910 DEBUG Processing 940/1020 atomic regions from SNP 281722 to 282322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,019 DEBUG Processing 910/1130 atomic regions from SNP 272893 to 273493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,173 DEBUG Processing 941/1020 atomic regions from SNP 282022 to 282622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,300 DEBUG Processing 911/1130 atomic regions from SNP 273193 to 273793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,428 DEBUG Processing 942/1020 atomic regions from SNP 282322 to 282922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,582 DEBUG Processing 912/1130 atomic regions from SNP 273493 to 274093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,694 DEBUG Processing 943/1020 atomic regions from SNP 282622 to 283222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,881 DEBUG Processing 913/1130 atomic regions from SNP 273793 to 274393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,972 DEBUG Processing 944/1020 atomic regions from SNP 282922 to 283522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,171 DEBUG Processing 914/1130 atomic regions from SNP 274093 to 274693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,260 DEBUG Processing 945/1020 atomic regions from SNP 283222 to 283822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,461 DEBUG Processing 915/1130 atomic regions from SNP 274393 to 274993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,553 DEBUG Processing 946/1020 atomic regions from SNP 283522 to 284122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,734 DEBUG Processing 916/1130 atomic regions from SNP 274693 to 275293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,831 DEBUG Processing 947/1020 atomic regions from SNP 283822 to 284422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,013 DEBUG Processing 917/1130 atomic regions from SNP 274993 to 275593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,111 DEBUG Processing 948/1020 atomic regions from SNP 284122 to 284722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,312 DEBUG Processing 918/1130 atomic regions from SNP 275293 to 275893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,400 DEBUG Processing 949/1020 atomic regions from SNP 284422 to 285022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,619 DEBUG Processing 919/1130 atomic regions from SNP 275593 to 276193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,694 DEBUG Processing 950/1020 atomic regions from SNP 284722 to 285322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,906 DEBUG Processing 920/1130 atomic regions from SNP 275893 to 276493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,994 DEBUG Processing 951/1020 atomic regions from SNP 285022 to 285622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,187 DEBUG Processing 921/1130 atomic regions from SNP 276193 to 276793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,278 DEBUG Processing 952/1020 atomic regions from SNP 285322 to 285922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,477 DEBUG Processing 922/1130 atomic regions from SNP 276493 to 277093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,560 DEBUG Processing 953/1020 atomic regions from SNP 285622 to 286222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,773 DEBUG Processing 923/1130 atomic regions from SNP 276793 to 277393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,841 DEBUG Processing 954/1020 atomic regions from SNP 285922 to 286522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,081 DEBUG Processing 924/1130 atomic regions from SNP 277093 to 277693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,119 DEBUG Processing 955/1020 atomic regions from SNP 286222 to 286822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,386 DEBUG Processing 925/1130 atomic regions from SNP 277393 to 277993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,393 DEBUG Processing 956/1020 atomic regions from SNP 286522 to 287122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,694 DEBUG Processing 926/1130 atomic regions from SNP 277693 to 278293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,696 DEBUG Processing 957/1020 atomic regions from SNP 286822 to 287422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,980 DEBUG Processing 927/1130 atomic regions from SNP 277993 to 278593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,014 DEBUG Processing 958/1020 atomic regions from SNP 287122 to 287722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,267 DEBUG Processing 928/1130 atomic regions from SNP 278293 to 278893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,323 DEBUG Processing 959/1020 atomic regions from SNP 287422 to 288022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,571 DEBUG Processing 929/1130 atomic regions from SNP 278593 to 279193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,621 DEBUG Processing 960/1020 atomic regions from SNP 287722 to 288322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,870 DEBUG Processing 930/1130 atomic regions from SNP 278893 to 279493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,922 DEBUG Processing 961/1020 atomic regions from SNP 288022 to 288622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,158 DEBUG Processing 931/1130 atomic regions from SNP 279193 to 279793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,215 DEBUG Processing 962/1020 atomic regions from SNP 288322 to 288922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,446 DEBUG Processing 932/1130 atomic regions from SNP 279493 to 280093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,500 DEBUG Processing 963/1020 atomic regions from SNP 288622 to 289222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,764 DEBUG Processing 933/1130 atomic regions from SNP 279793 to 280393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,801 DEBUG Processing 964/1020 atomic regions from SNP 288922 to 289522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,063 DEBUG Processing 934/1130 atomic regions from SNP 280093 to 280693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,104 DEBUG Processing 965/1020 atomic regions from SNP 289222 to 289822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,342 DEBUG Processing 935/1130 atomic regions from SNP 280393 to 280993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,408 DEBUG Processing 966/1020 atomic regions from SNP 289522 to 290122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,628 DEBUG Processing 936/1130 atomic regions from SNP 280693 to 281293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,695 DEBUG Processing 967/1020 atomic regions from SNP 289822 to 290422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,916 DEBUG Processing 937/1130 atomic regions from SNP 280993 to 281593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,981 DEBUG Processing 968/1020 atomic regions from SNP 290122 to 290722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,208 DEBUG Processing 938/1130 atomic regions from SNP 281293 to 281893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,272 DEBUG Processing 969/1020 atomic regions from SNP 290422 to 291022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,495 DEBUG Processing 939/1130 atomic regions from SNP 281593 to 282193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,579 DEBUG Processing 970/1020 atomic regions from SNP 290722 to 291322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,779 DEBUG Processing 940/1130 atomic regions from SNP 281893 to 282493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,875 DEBUG Processing 971/1020 atomic regions from SNP 291022 to 291622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,068 DEBUG Processing 941/1130 atomic regions from SNP 282193 to 282793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,182 DEBUG Processing 972/1020 atomic regions from SNP 291322 to 291922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,359 DEBUG Processing 942/1130 atomic regions from SNP 282493 to 283093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,482 DEBUG Processing 973/1020 atomic regions from SNP 291622 to 292222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,663 DEBUG Processing 943/1130 atomic regions from SNP 282793 to 283393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,783 DEBUG Processing 974/1020 atomic regions from SNP 291922 to 292522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,969 DEBUG Processing 944/1130 atomic regions from SNP 283093 to 283693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,091 DEBUG Processing 975/1020 atomic regions from SNP 292222 to 292822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,268 DEBUG Processing 945/1130 atomic regions from SNP 283393 to 283993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,398 DEBUG Processing 976/1020 atomic regions from SNP 292522 to 293122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,555 DEBUG Processing 946/1130 atomic regions from SNP 283693 to 284293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,702 DEBUG Processing 977/1020 atomic regions from SNP 292822 to 293422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,848 DEBUG Processing 947/1130 atomic regions from SNP 283993 to 284593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,007 DEBUG Processing 978/1020 atomic regions from SNP 293122 to 293722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,147 DEBUG Processing 948/1130 atomic regions from SNP 284293 to 284893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,308 DEBUG Processing 979/1020 atomic regions from SNP 293422 to 294022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,461 DEBUG Processing 949/1130 atomic regions from SNP 284593 to 285193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,606 DEBUG Processing 980/1020 atomic regions from SNP 293722 to 294322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,760 DEBUG Processing 950/1130 atomic regions from SNP 284893 to 285493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,883 DEBUG Processing 981/1020 atomic regions from SNP 294022 to 294622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,069 DEBUG Processing 951/1130 atomic regions from SNP 285193 to 285793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,159 DEBUG Processing 982/1020 atomic regions from SNP 294322 to 294922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,387 DEBUG Processing 952/1130 atomic regions from SNP 285493 to 286093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,431 DEBUG Processing 983/1020 atomic regions from SNP 294622 to 295222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,705 DEBUG Processing 953/1130 atomic regions from SNP 285793 to 286393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,706 DEBUG Processing 984/1020 atomic regions from SNP 294922 to 295522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,979 DEBUG Processing 985/1020 atomic regions from SNP 295222 to 295822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,016 DEBUG Processing 954/1130 atomic regions from SNP 286093 to 286693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,241 DEBUG Processing 986/1020 atomic regions from SNP 295522 to 296122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,322 DEBUG Processing 955/1130 atomic regions from SNP 286393 to 286993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,507 DEBUG Processing 987/1020 atomic regions from SNP 295822 to 296422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,608 DEBUG Processing 956/1130 atomic regions from SNP 286693 to 287293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,777 DEBUG Processing 988/1020 atomic regions from SNP 296122 to 296722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,886 DEBUG Processing 957/1130 atomic regions from SNP 286993 to 287593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,053 DEBUG Processing 989/1020 atomic regions from SNP 296422 to 297022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,165 DEBUG Processing 958/1130 atomic regions from SNP 287293 to 287893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,332 DEBUG Processing 990/1020 atomic regions from SNP 296722 to 297322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,451 DEBUG Processing 959/1130 atomic regions from SNP 287593 to 288193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,640 DEBUG Processing 991/1020 atomic regions from SNP 297022 to 297622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,732 DEBUG Processing 960/1130 atomic regions from SNP 287893 to 288493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,943 DEBUG Processing 992/1020 atomic regions from SNP 297322 to 297922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,053 DEBUG Processing 961/1130 atomic regions from SNP 288193 to 288793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,219 DEBUG Processing 993/1020 atomic regions from SNP 297622 to 298222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,370 DEBUG Processing 962/1130 atomic regions from SNP 288493 to 289093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,497 DEBUG Processing 994/1020 atomic regions from SNP 297922 to 298522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,562 DEBUG Segmenting atomic regions: 2025-01-31 09:49:26,656 DEBUG Processing 963/1130 atomic regions from SNP 288793 to 289393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,678 DEBUG Processing 1/854 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,773 DEBUG Processing 995/1020 atomic regions from SNP 298222 to 298822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,922 DEBUG Processing 2/854 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,943 DEBUG Processing 964/1130 atomic regions from SNP 289093 to 289693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,054 DEBUG Processing 996/1020 atomic regions from SNP 298522 to 299122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,167 DEBUG Processing 3/854 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,227 DEBUG Processing 965/1130 atomic regions from SNP 289393 to 289993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,332 DEBUG Processing 997/1020 atomic regions from SNP 298822 to 299422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,407 DEBUG Processing 4/854 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,503 DEBUG Processing 966/1130 atomic regions from SNP 289693 to 290293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,606 DEBUG Processing 998/1020 atomic regions from SNP 299122 to 299722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,650 DEBUG Processing 5/854 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,796 DEBUG Processing 967/1130 atomic regions from SNP 289993 to 290593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,885 DEBUG Processing 999/1020 atomic regions from SNP 299422 to 300022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,894 DEBUG Processing 6/854 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,107 DEBUG Processing 968/1130 atomic regions from SNP 290293 to 290893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,140 DEBUG Processing 7/854 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,164 DEBUG Processing 1000/1020 atomic regions from SNP 299722 to 300322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,388 DEBUG Processing 8/854 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,396 DEBUG Processing 969/1130 atomic regions from SNP 290593 to 291193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,437 DEBUG Processing 1001/1020 atomic regions from SNP 300022 to 300622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,632 DEBUG Processing 9/854 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,682 DEBUG Processing 970/1130 atomic regions from SNP 290893 to 291493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,711 DEBUG Processing 1002/1020 atomic regions from SNP 300322 to 300922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,875 DEBUG Processing 10/854 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,974 DEBUG Processing 971/1130 atomic regions from SNP 291193 to 291793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,987 DEBUG Processing 1003/1020 atomic regions from SNP 300622 to 301222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,111 DEBUG Processing 11/854 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,269 DEBUG Processing 1004/1020 atomic regions from SNP 300922 to 301522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,269 DEBUG Processing 972/1130 atomic regions from SNP 291493 to 292093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,356 DEBUG Processing 12/854 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,559 DEBUG Processing 973/1130 atomic regions from SNP 291793 to 292393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,578 DEBUG Processing 1005/1020 atomic regions from SNP 301222 to 301822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,625 DEBUG Processing 13/854 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,842 DEBUG Processing 974/1130 atomic regions from SNP 292093 to 292693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,867 DEBUG Processing 1006/1020 atomic regions from SNP 301522 to 302122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,893 DEBUG Processing 14/854 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,124 DEBUG Processing 975/1130 atomic regions from SNP 292393 to 292993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,141 DEBUG Processing 1007/1020 atomic regions from SNP 301822 to 302422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,141 DEBUG Processing 15/854 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,388 DEBUG Processing 16/854 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,409 DEBUG Processing 976/1130 atomic regions from SNP 292693 to 293293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,419 DEBUG Processing 1008/1020 atomic regions from SNP 302122 to 302722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,639 DEBUG Processing 17/854 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,707 DEBUG Processing 977/1130 atomic regions from SNP 292993 to 293593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,735 DEBUG Processing 1009/1020 atomic regions from SNP 302422 to 303022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,883 DEBUG Processing 18/854 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,004 DEBUG Processing 978/1130 atomic regions from SNP 293293 to 293893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,036 DEBUG Processing 1010/1020 atomic regions from SNP 302722 to 303322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,127 DEBUG Processing 19/854 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,313 DEBUG Processing 1011/1020 atomic regions from SNP 303022 to 303622 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,317 DEBUG Processing 979/1130 atomic regions from SNP 293593 to 294193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,368 DEBUG Processing 20/854 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,593 DEBUG Processing 1012/1020 atomic regions from SNP 303322 to 303922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,605 DEBUG Processing 980/1130 atomic regions from SNP 293893 to 294493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,611 DEBUG Processing 21/854 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,859 DEBUG Processing 22/854 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,885 DEBUG Processing 1013/1020 atomic regions from SNP 303622 to 304222 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,894 DEBUG Processing 981/1130 atomic regions from SNP 294193 to 294793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,107 DEBUG Processing 23/854 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,167 DEBUG Processing 1014/1020 atomic regions from SNP 303922 to 304522 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,191 DEBUG Processing 982/1130 atomic regions from SNP 294493 to 295093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,351 DEBUG Processing 24/854 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,446 DEBUG Processing 1015/1020 atomic regions from SNP 304222 to 304822 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,507 DEBUG Processing 983/1130 atomic regions from SNP 294793 to 295393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,598 DEBUG Processing 25/854 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,727 DEBUG Processing 1016/1020 atomic regions from SNP 304522 to 305122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,828 DEBUG Processing 984/1130 atomic regions from SNP 295093 to 295693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,839 DEBUG Processing 26/854 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,024 DEBUG Processing 1017/1020 atomic regions from SNP 304822 to 305422 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,099 DEBUG Processing 27/854 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,154 DEBUG Processing 985/1130 atomic regions from SNP 295393 to 295993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,334 DEBUG Processing 1018/1020 atomic regions from SNP 305122 to 305722 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,359 DEBUG Processing 28/854 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,476 DEBUG Processing 986/1130 atomic regions from SNP 295693 to 296293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,606 DEBUG Processing 29/854 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,627 DEBUG Processing 1019/1020 atomic regions from SNP 305422 to 306022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,805 DEBUG Processing 987/1130 atomic regions from SNP 295993 to 296593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,851 DEBUG Processing 30/854 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,908 DEBUG Processing 1020/1020 atomic regions from SNP 305722 to 306322 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,046 DEBUG Unique SNPs positions in subchromosome 1: 306323 2025-01-31 09:49:34,100 DEBUG Processing 988/1130 atomic regions from SNP 296293 to 296893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,101 DEBUG Processing 31/854 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,378 DEBUG Processing 32/854 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,391 DEBUG Processing 989/1130 atomic regions from SNP 296593 to 297193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,620 DEBUG Processing 33/854 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,683 DEBUG Processing 990/1130 atomic regions from SNP 296893 to 297493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,856 DEBUG Processing 34/854 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,996 DEBUG Processing 991/1130 atomic regions from SNP 297193 to 297793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,092 DEBUG Processing 35/854 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,315 DEBUG Processing 992/1130 atomic regions from SNP 297493 to 298093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,328 DEBUG Processing 36/854 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,571 DEBUG Processing 37/854 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,614 DEBUG Processing 993/1130 atomic regions from SNP 297793 to 298393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,808 DEBUG Processing 38/854 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,896 DEBUG Processing 994/1130 atomic regions from SNP 298093 to 298693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,044 DEBUG Processing 39/854 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,176 DEBUG Processing 995/1130 atomic regions from SNP 298393 to 298993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,276 DEBUG Processing 40/854 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,458 DEBUG Processing 996/1130 atomic regions from SNP 298693 to 299293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,510 DEBUG Processing 41/854 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,743 DEBUG Processing 997/1130 atomic regions from SNP 298993 to 299593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,748 DEBUG Processing 42/854 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,986 DEBUG Processing 43/854 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,025 DEBUG Processing 998/1130 atomic regions from SNP 299293 to 299893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,225 DEBUG Processing 44/854 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,313 DEBUG Processing 999/1130 atomic regions from SNP 299593 to 300193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,458 DEBUG Processing 45/854 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,598 DEBUG Processing 1000/1130 atomic regions from SNP 299893 to 300493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,688 DEBUG Processing 46/854 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,869 DEBUG Processing 1001/1130 atomic regions from SNP 300193 to 300793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,919 DEBUG Processing 47/854 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,142 DEBUG Processing 1002/1130 atomic regions from SNP 300493 to 301093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,152 DEBUG Processing 48/854 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,390 DEBUG Processing 49/854 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,418 DEBUG Processing 1003/1130 atomic regions from SNP 300793 to 301393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,623 DEBUG Processing 50/854 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,701 DEBUG Processing 1004/1130 atomic regions from SNP 301093 to 301693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,849 DEBUG Processing 51/854 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,978 DEBUG Processing 1005/1130 atomic regions from SNP 301393 to 301993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,074 DEBUG Processing 52/854 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,254 DEBUG Processing 1006/1130 atomic regions from SNP 301693 to 302293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,302 DEBUG Processing 53/854 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,536 DEBUG Processing 1007/1130 atomic regions from SNP 301993 to 302593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,537 DEBUG Processing 54/854 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,775 DEBUG Processing 55/854 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,818 DEBUG Processing 1008/1130 atomic regions from SNP 302293 to 302893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,015 DEBUG Processing 56/854 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,098 DEBUG Processing 1009/1130 atomic regions from SNP 302593 to 303193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,250 DEBUG Processing 57/854 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,376 DEBUG Processing 1010/1130 atomic regions from SNP 302893 to 303493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,487 DEBUG Processing 58/854 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,654 DEBUG Processing 1011/1130 atomic regions from SNP 303193 to 303793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,731 DEBUG Processing 59/854 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,936 DEBUG Processing 1012/1130 atomic regions from SNP 303493 to 304093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,969 DEBUG Processing 60/854 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,218 DEBUG Processing 1013/1130 atomic regions from SNP 303793 to 304393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,226 DEBUG Processing 61/854 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,471 DEBUG Processing 62/854 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,504 DEBUG Processing 1014/1130 atomic regions from SNP 304093 to 304693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,715 DEBUG Processing 63/854 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,789 DEBUG Processing 1015/1130 atomic regions from SNP 304393 to 304993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,961 DEBUG Processing 64/854 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,067 DEBUG Processing 1016/1130 atomic regions from SNP 304693 to 305293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,204 DEBUG Processing 65/854 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,335 DEBUG Processing 1017/1130 atomic regions from SNP 304993 to 305593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,447 DEBUG Processing 66/854 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,617 DEBUG Processing 1018/1130 atomic regions from SNP 305293 to 305893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,691 DEBUG Processing 67/854 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,910 DEBUG Processing 1019/1130 atomic regions from SNP 305593 to 306193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,935 DEBUG Processing 68/854 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,181 DEBUG Processing 69/854 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,206 DEBUG Processing 1020/1130 atomic regions from SNP 305893 to 306493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,427 DEBUG Processing 70/854 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,492 DEBUG Processing 1021/1130 atomic regions from SNP 306193 to 306793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,674 DEBUG Processing 71/854 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,771 DEBUG Processing 1022/1130 atomic regions from SNP 306493 to 307093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,916 DEBUG Processing 72/854 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,052 DEBUG Processing 1023/1130 atomic regions from SNP 306793 to 307393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,162 DEBUG Processing 73/854 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,326 DEBUG Processing 1024/1130 atomic regions from SNP 307093 to 307693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,400 DEBUG Processing 74/854 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,603 DEBUG Processing 1025/1130 atomic regions from SNP 307393 to 307993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,642 DEBUG Processing 75/854 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,888 DEBUG Processing 1026/1130 atomic regions from SNP 307693 to 308293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,891 DEBUG Processing 76/854 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,128 DEBUG Processing 77/854 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,199 DEBUG Processing 1027/1130 atomic regions from SNP 307993 to 308593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,364 DEBUG Processing 78/854 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,508 DEBUG Processing 1028/1130 atomic regions from SNP 308293 to 308893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,612 DEBUG Processing 79/854 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,838 DEBUG Processing 1029/1130 atomic regions from SNP 308593 to 309193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,854 DEBUG Processing 80/854 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,098 DEBUG Processing 81/854 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,131 DEBUG Processing 1030/1130 atomic regions from SNP 308893 to 309493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,339 DEBUG Processing 82/854 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,425 DEBUG Processing 1031/1130 atomic regions from SNP 309193 to 309793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,600 DEBUG Processing 83/854 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,714 DEBUG Processing 1032/1130 atomic regions from SNP 309493 to 310093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,861 DEBUG Processing 84/854 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,995 DEBUG Processing 1033/1130 atomic regions from SNP 309793 to 310393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,099 DEBUG Processing 85/854 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,290 DEBUG Processing 1034/1130 atomic regions from SNP 310093 to 310693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,337 DEBUG Processing 86/854 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,578 DEBUG Processing 87/854 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,617 DEBUG Processing 1035/1130 atomic regions from SNP 310393 to 310993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,825 DEBUG Processing 88/854 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,953 DEBUG Processing 1036/1130 atomic regions from SNP 310693 to 311293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,065 DEBUG Processing 89/854 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,274 DEBUG Processing 1037/1130 atomic regions from SNP 310993 to 311593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,307 DEBUG Processing 90/854 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,552 DEBUG Processing 91/854 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,571 DEBUG Processing 1038/1130 atomic regions from SNP 311293 to 311893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,800 DEBUG Processing 92/854 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,913 DEBUG Processing 1039/1130 atomic regions from SNP 311593 to 312193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,047 DEBUG Processing 93/854 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,238 DEBUG Processing 1040/1130 atomic regions from SNP 311893 to 312493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,298 DEBUG Processing 94/854 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,548 DEBUG Processing 95/854 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,568 DEBUG Processing 1041/1130 atomic regions from SNP 312193 to 312793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,804 DEBUG Processing 96/854 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,901 DEBUG Processing 1042/1130 atomic regions from SNP 312493 to 313093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,047 DEBUG Processing 97/854 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,224 DEBUG Processing 1043/1130 atomic regions from SNP 312793 to 313393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,290 DEBUG Processing 98/854 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,534 DEBUG Processing 99/854 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,550 DEBUG Processing 1044/1130 atomic regions from SNP 313093 to 313693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,779 DEBUG Processing 100/854 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,867 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:49:50,883 DEBUG Processing 1045/1130 atomic regions from SNP 313393 to 313993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,019 DEBUG Processing 101/854 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,214 DEBUG Processing 1046/1130 atomic regions from SNP 313693 to 314293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,255 DEBUG Processing 102/854 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,502 DEBUG Processing 103/854 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,529 DEBUG Processing 1047/1130 atomic regions from SNP 313993 to 314593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,766 DEBUG Processing 104/854 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,827 DEBUG Processing 1048/1130 atomic regions from SNP 314293 to 314893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,007 DEBUG Processing 105/854 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,129 DEBUG Processing 1049/1130 atomic regions from SNP 314593 to 315193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,249 DEBUG Processing 106/854 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,425 DEBUG Processing 1050/1130 atomic regions from SNP 314893 to 315493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,491 DEBUG Processing 107/854 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,736 DEBUG Processing 108/854 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,740 DEBUG Processing 1051/1130 atomic regions from SNP 315193 to 315793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,988 DEBUG Processing 109/854 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,043 DEBUG Processing 1052/1130 atomic regions from SNP 315493 to 316093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,244 DEBUG Processing 110/854 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,358 DEBUG Processing 1053/1130 atomic regions from SNP 315793 to 316393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,504 DEBUG Processing 111/854 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,651 DEBUG Processing 1054/1130 atomic regions from SNP 316093 to 316693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,750 DEBUG Processing 112/854 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,938 DEBUG Processing 1055/1130 atomic regions from SNP 316393 to 316993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,998 DEBUG Processing 113/854 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,246 DEBUG Processing 1056/1130 atomic regions from SNP 316693 to 317293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,247 DEBUG Processing 114/854 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,495 DEBUG Processing 115/854 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,550 DEBUG Processing 1057/1130 atomic regions from SNP 316993 to 317593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,738 DEBUG Processing 116/854 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,869 DEBUG Processing 1058/1130 atomic regions from SNP 317293 to 317893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,979 DEBUG Processing 117/854 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,167 DEBUG Processing 1059/1130 atomic regions from SNP 317593 to 318193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,216 DEBUG Processing 118/854 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,446 DEBUG Processing 1060/1130 atomic regions from SNP 317893 to 318493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,455 DEBUG Processing 119/854 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,701 DEBUG Processing 120/854 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,738 DEBUG Processing 1061/1130 atomic regions from SNP 318193 to 318793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,949 DEBUG Processing 121/854 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,030 DEBUG Processing 1062/1130 atomic regions from SNP 318493 to 319093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,191 DEBUG Processing 122/854 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,322 DEBUG Processing 1063/1130 atomic regions from SNP 318793 to 319393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,437 DEBUG Processing 123/854 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,624 DEBUG Processing 1064/1130 atomic regions from SNP 319093 to 319693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,678 DEBUG Processing 124/854 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,909 DEBUG Processing 1065/1130 atomic regions from SNP 319393 to 319993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,915 DEBUG Processing 125/854 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,153 DEBUG Processing 126/854 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,217 DEBUG Processing 1066/1130 atomic regions from SNP 319693 to 320293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,401 DEBUG Processing 127/854 atomic regions from SNP 37926 to 38526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,539 DEBUG Processing 1067/1130 atomic regions from SNP 319993 to 320593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,644 DEBUG Processing 128/854 atomic regions from SNP 38226 to 38826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,858 DEBUG Processing 1068/1130 atomic regions from SNP 320293 to 320893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,899 DEBUG Processing 129/854 atomic regions from SNP 38526 to 39126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,155 DEBUG Processing 130/854 atomic regions from SNP 38826 to 39426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,174 DEBUG Processing 1069/1130 atomic regions from SNP 320593 to 321193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,417 DEBUG Processing 131/854 atomic regions from SNP 39126 to 39726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,506 DEBUG Processing 1070/1130 atomic regions from SNP 320893 to 321493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,682 DEBUG Processing 132/854 atomic regions from SNP 39426 to 40026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,845 DEBUG Processing 1071/1130 atomic regions from SNP 321193 to 321793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,938 DEBUG Processing 133/854 atomic regions from SNP 39726 to 40326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,155 DEBUG Processing 1072/1130 atomic regions from SNP 321493 to 322093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,194 DEBUG Processing 134/854 atomic regions from SNP 40026 to 40626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,444 DEBUG Processing 135/854 atomic regions from SNP 40326 to 40926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,452 DEBUG Processing 1073/1130 atomic regions from SNP 321793 to 322393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,691 DEBUG Processing 136/854 atomic regions from SNP 40626 to 41226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,740 DEBUG Processing 1074/1130 atomic regions from SNP 322093 to 322693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,946 DEBUG Processing 137/854 atomic regions from SNP 40926 to 41526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,039 DEBUG Processing 1075/1130 atomic regions from SNP 322393 to 322993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,195 DEBUG Processing 138/854 atomic regions from SNP 41226 to 41826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,320 DEBUG Processing 1076/1130 atomic regions from SNP 322693 to 323293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,437 DEBUG Processing 139/854 atomic regions from SNP 41526 to 42126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,597 DEBUG Processing 1077/1130 atomic regions from SNP 322993 to 323593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,688 DEBUG Processing 140/854 atomic regions from SNP 41826 to 42426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,823 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:50:00,893 DEBUG Processing 1078/1130 atomic regions from SNP 323293 to 323893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,939 DEBUG Processing 141/854 atomic regions from SNP 42126 to 42726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,186 DEBUG Processing 1079/1130 atomic regions from SNP 323593 to 324193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,192 DEBUG Processing 142/854 atomic regions from SNP 42426 to 43026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,442 DEBUG Processing 143/854 atomic regions from SNP 42726 to 43326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,474 DEBUG Processing 1080/1130 atomic regions from SNP 323893 to 324493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,713 DEBUG Processing 144/854 atomic regions from SNP 43026 to 43626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,768 DEBUG Processing 1081/1130 atomic regions from SNP 324193 to 324793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,979 DEBUG Processing 145/854 atomic regions from SNP 43326 to 43926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,068 DEBUG Processing 1082/1130 atomic regions from SNP 324493 to 325093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,239 DEBUG Processing 146/854 atomic regions from SNP 43626 to 44226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,363 DEBUG Processing 1083/1130 atomic regions from SNP 324793 to 325393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,503 DEBUG Processing 147/854 atomic regions from SNP 43926 to 44526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,661 DEBUG Processing 1084/1130 atomic regions from SNP 325093 to 325693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,758 DEBUG Processing 148/854 atomic regions from SNP 44226 to 44826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,954 DEBUG Processing 1085/1130 atomic regions from SNP 325393 to 325993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,031 DEBUG Processing 149/854 atomic regions from SNP 44526 to 45126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,238 DEBUG Processing 1086/1130 atomic regions from SNP 325693 to 326293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,304 DEBUG Processing 150/854 atomic regions from SNP 44826 to 45426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,520 DEBUG Processing 1087/1130 atomic regions from SNP 325993 to 326593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,575 DEBUG Processing 151/854 atomic regions from SNP 45126 to 45726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,808 DEBUG Processing 1088/1130 atomic regions from SNP 326293 to 326893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,849 DEBUG Processing 152/854 atomic regions from SNP 45426 to 46026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,096 DEBUG Processing 1089/1130 atomic regions from SNP 326593 to 327193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,119 DEBUG Processing 153/854 atomic regions from SNP 45726 to 46326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,387 DEBUG Processing 1090/1130 atomic regions from SNP 326893 to 327493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,389 DEBUG Processing 154/854 atomic regions from SNP 46026 to 46626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,680 DEBUG Processing 155/854 atomic regions from SNP 46326 to 46926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,691 DEBUG Processing 1091/1130 atomic regions from SNP 327193 to 327793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,967 DEBUG Processing 156/854 atomic regions from SNP 46626 to 47226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,001 DEBUG Processing 1092/1130 atomic regions from SNP 327493 to 328093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,037 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:50:05,251 DEBUG Processing 157/854 atomic regions from SNP 46926 to 47526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,315 DEBUG Processing 1093/1130 atomic regions from SNP 327793 to 328393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,536 DEBUG Processing 158/854 atomic regions from SNP 47226 to 47826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,618 DEBUG Processing 1094/1130 atomic regions from SNP 328093 to 328693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,820 DEBUG Processing 159/854 atomic regions from SNP 47526 to 48126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,922 DEBUG Processing 1095/1130 atomic regions from SNP 328393 to 328993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,083 DEBUG Processing 160/854 atomic regions from SNP 47826 to 48426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,212 DEBUG Processing 1096/1130 atomic regions from SNP 328693 to 329293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,370 DEBUG Processing 161/854 atomic regions from SNP 48126 to 48726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,519 DEBUG Processing 1097/1130 atomic regions from SNP 328993 to 329593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,643 DEBUG Processing 162/854 atomic regions from SNP 48426 to 49026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,843 DEBUG Processing 1098/1130 atomic regions from SNP 329293 to 329893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,900 DEBUG Processing 163/854 atomic regions from SNP 48726 to 49326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,147 DEBUG Processing 1099/1130 atomic regions from SNP 329593 to 330193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,179 DEBUG Processing 164/854 atomic regions from SNP 49026 to 49626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,437 DEBUG Processing 165/854 atomic regions from SNP 49326 to 49926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,439 DEBUG Processing 1100/1130 atomic regions from SNP 329893 to 330493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,697 DEBUG Processing 166/854 atomic regions from SNP 49626 to 50226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,738 DEBUG Processing 1101/1130 atomic regions from SNP 330193 to 330793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,954 DEBUG Processing 167/854 atomic regions from SNP 49926 to 50526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,040 DEBUG Processing 1102/1130 atomic regions from SNP 330493 to 331093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,205 DEBUG Processing 168/854 atomic regions from SNP 50226 to 50826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,335 DEBUG Processing 1103/1130 atomic regions from SNP 330793 to 331393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,453 DEBUG Processing 169/854 atomic regions from SNP 50526 to 51126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,648 DEBUG Processing 1104/1130 atomic regions from SNP 331093 to 331693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,732 DEBUG Processing 170/854 atomic regions from SNP 50826 to 51426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,987 DEBUG Processing 1105/1130 atomic regions from SNP 331393 to 331993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,000 DEBUG Processing 171/854 atomic regions from SNP 51126 to 51726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,248 DEBUG Processing 172/854 atomic regions from SNP 51426 to 52026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,314 DEBUG Processing 1106/1130 atomic regions from SNP 331693 to 332293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,492 DEBUG Processing 173/854 atomic regions from SNP 51726 to 52326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,643 DEBUG Processing 1107/1130 atomic regions from SNP 331993 to 332593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,724 DEBUG Processing 174/854 atomic regions from SNP 52026 to 52626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,967 DEBUG Processing 175/854 atomic regions from SNP 52326 to 52926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,969 DEBUG Processing 1108/1130 atomic regions from SNP 332293 to 332893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,227 DEBUG Processing 176/854 atomic regions from SNP 52626 to 53226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,297 DEBUG Processing 1109/1130 atomic regions from SNP 332593 to 333193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,476 DEBUG Processing 177/854 atomic regions from SNP 52926 to 53526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,604 DEBUG Processing 1110/1130 atomic regions from SNP 332893 to 333493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,722 DEBUG Processing 178/854 atomic regions from SNP 53226 to 53826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,932 DEBUG Processing 1111/1130 atomic regions from SNP 333193 to 333793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,971 DEBUG Processing 179/854 atomic regions from SNP 53526 to 54126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,227 DEBUG Processing 180/854 atomic regions from SNP 53826 to 54426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,278 DEBUG Processing 1112/1130 atomic regions from SNP 333493 to 334093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,505 DEBUG Processing 181/854 atomic regions from SNP 54126 to 54726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,604 DEBUG Processing 1113/1130 atomic regions from SNP 333793 to 334393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,778 DEBUG Processing 182/854 atomic regions from SNP 54426 to 55026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,895 DEBUG Processing 1114/1130 atomic regions from SNP 334093 to 334693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,030 DEBUG Processing 183/854 atomic regions from SNP 54726 to 55326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,188 DEBUG Processing 1115/1130 atomic regions from SNP 334393 to 334993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,307 DEBUG Processing 184/854 atomic regions from SNP 55026 to 55626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,494 DEBUG Processing 1116/1130 atomic regions from SNP 334693 to 335293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,581 DEBUG Processing 185/854 atomic regions from SNP 55326 to 55926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,798 DEBUG Processing 1117/1130 atomic regions from SNP 334993 to 335593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,849 DEBUG Processing 186/854 atomic regions from SNP 55626 to 56226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,120 DEBUG Processing 1118/1130 atomic regions from SNP 335293 to 335893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,137 DEBUG Processing 187/854 atomic regions from SNP 55926 to 56526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,401 DEBUG Processing 188/854 atomic regions from SNP 56226 to 56826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,431 DEBUG Processing 1119/1130 atomic regions from SNP 335593 to 336193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,650 DEBUG Processing 189/854 atomic regions from SNP 56526 to 57126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,723 DEBUG Processing 1120/1130 atomic regions from SNP 335893 to 336493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,887 DEBUG Processing 190/854 atomic regions from SNP 56826 to 57426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,959 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:50:13,961 DEBUG chr7: Signal quantile: 0.986. signal threshold: 12. Best RMSEA: 0.009 2025-01-31 09:50:14,023 DEBUG Processing 1121/1130 atomic regions from SNP 336193 to 336793 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,124 DEBUG Processing 191/854 atomic regions from SNP 57126 to 57726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,329 DEBUG Processing 1122/1130 atomic regions from SNP 336493 to 337093 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,364 DEBUG Processing 192/854 atomic regions from SNP 57426 to 58026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,614 DEBUG Processing 193/854 atomic regions from SNP 57726 to 58326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,626 DEBUG Processing 1123/1130 atomic regions from SNP 336793 to 337393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,868 DEBUG Processing 194/854 atomic regions from SNP 58026 to 58626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,920 DEBUG Processing 1124/1130 atomic regions from SNP 337093 to 337693 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,130 DEBUG Processing 195/854 atomic regions from SNP 58326 to 58926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,212 DEBUG Processing 1125/1130 atomic regions from SNP 337393 to 337993 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,378 DEBUG Processing 196/854 atomic regions from SNP 58626 to 59226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,513 DEBUG Processing 1126/1130 atomic regions from SNP 337693 to 338293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,628 DEBUG Processing 197/854 atomic regions from SNP 58926 to 59526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,829 DEBUG Processing 1127/1130 atomic regions from SNP 337993 to 338593 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,884 DEBUG Processing 198/854 atomic regions from SNP 59226 to 59826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,146 DEBUG Processing 199/854 atomic regions from SNP 59526 to 60126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,158 DEBUG Processing 1128/1130 atomic regions from SNP 338293 to 338893 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,408 DEBUG Processing 200/854 atomic regions from SNP 59826 to 60426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,474 DEBUG Processing 1129/1130 atomic regions from SNP 338593 to 339193 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,661 DEBUG Processing 201/854 atomic regions from SNP 60126 to 60726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,791 DEBUG Processing 1130/1130 atomic regions from SNP 338893 to 339493 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,916 DEBUG Processing 202/854 atomic regions from SNP 60426 to 61026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,919 DEBUG chr7 total SNP count: 231478 2025-01-31 09:50:16,919 DEBUG chr7 length: 145441459 2025-01-31 09:50:16,919 DEBUG ----------------------------------------- 2025-01-31 09:50:16,919 INFO Processing SNPs in chr7 2025-01-31 09:50:16,951 DEBUG Unique SNPs positions in subchromosome 1: 339494 2025-01-31 09:50:17,174 DEBUG Processing 203/854 atomic regions from SNP 60726 to 61326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,263 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:50:17,265 DEBUG chr10: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.012 2025-01-31 09:50:17,308 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20830), (20830, 20863), (20863, 231478)] 2025-01-31 09:50:17,419 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:17,433 DEBUG Processing 204/854 atomic regions from SNP 61026 to 61626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,704 DEBUG Processing 205/854 atomic regions from SNP 61326 to 61926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,981 DEBUG Processing 206/854 atomic regions from SNP 61626 to 62226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,262 DEBUG Processing 207/854 atomic regions from SNP 61926 to 62526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,546 DEBUG Processing 208/854 atomic regions from SNP 62226 to 62826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,831 DEBUG Processing 209/854 atomic regions from SNP 62526 to 63126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,103 DEBUG Processing 210/854 atomic regions from SNP 62826 to 63426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,371 DEBUG Processing 211/854 atomic regions from SNP 63126 to 63726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,673 DEBUG Processing 212/854 atomic regions from SNP 63426 to 64026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,754 DEBUG chr10 total SNP count: 224502 2025-01-31 09:50:19,755 DEBUG chr10 length: 130694993 2025-01-31 09:50:19,755 DEBUG ----------------------------------------- 2025-01-31 09:50:19,755 INFO Processing SNPs in chr10 2025-01-31 09:50:19,951 DEBUG Processing 213/854 atomic regions from SNP 63726 to 64326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,991 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 224502)] 2025-01-31 09:50:20,025 DEBUG Segmenting atomic regions: 2025-01-31 09:50:20,134 DEBUG Processing 1/68 atomic regions from SNP 0 to 602 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:20,156 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:20,200 DEBUG Processing 214/854 atomic regions from SNP 64026 to 64626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,387 DEBUG Processing 2/68 atomic regions from SNP 302 to 904 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:20,447 DEBUG Processing 215/854 atomic regions from SNP 64326 to 64926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,639 DEBUG Processing 3/68 atomic regions from SNP 604 to 1206 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:20,696 DEBUG Processing 216/854 atomic regions from SNP 64626 to 65226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,926 DEBUG Processing 4/68 atomic regions from SNP 906 to 1508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:20,955 DEBUG Processing 217/854 atomic regions from SNP 64926 to 65526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,204 DEBUG Processing 5/68 atomic regions from SNP 1208 to 1810 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:21,213 DEBUG Processing 218/854 atomic regions from SNP 65226 to 65826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,479 DEBUG Processing 219/854 atomic regions from SNP 65526 to 66126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,495 DEBUG Processing 6/68 atomic regions from SNP 1510 to 2112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:21,735 DEBUG Processing 220/854 atomic regions from SNP 65826 to 66426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,765 DEBUG Processing 7/68 atomic regions from SNP 1812 to 2414 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:21,870 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:50:21,872 DEBUG chr8: Signal quantile: 0.989. signal threshold: 13. Best RMSEA: 0.010 2025-01-31 09:50:21,989 DEBUG Processing 221/854 atomic regions from SNP 66126 to 66726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,053 DEBUG Processing 8/68 atomic regions from SNP 2114 to 2716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:22,248 DEBUG Processing 222/854 atomic regions from SNP 66426 to 67026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,337 DEBUG Processing 9/68 atomic regions from SNP 2416 to 3018 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:22,500 DEBUG Processing 223/854 atomic regions from SNP 66726 to 67326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,624 DEBUG Processing 10/68 atomic regions from SNP 2718 to 3320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:22,756 DEBUG Processing 224/854 atomic regions from SNP 67026 to 67626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,911 DEBUG Processing 11/68 atomic regions from SNP 3020 to 3622 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:23,009 DEBUG Processing 225/854 atomic regions from SNP 67326 to 67926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,174 DEBUG Processing 12/68 atomic regions from SNP 3322 to 3924 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:23,267 DEBUG Processing 226/854 atomic regions from SNP 67626 to 68226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,427 DEBUG Processing 13/68 atomic regions from SNP 3624 to 4226 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:23,528 DEBUG Processing 227/854 atomic regions from SNP 67926 to 68526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,677 DEBUG Processing 14/68 atomic regions from SNP 3926 to 4528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:23,788 DEBUG Processing 228/854 atomic regions from SNP 68226 to 68826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,917 DEBUG Processing 15/68 atomic regions from SNP 4228 to 4830 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:24,039 DEBUG Processing 229/854 atomic regions from SNP 68526 to 69126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,183 DEBUG Processing 16/68 atomic regions from SNP 4530 to 5132 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:24,295 DEBUG Processing 230/854 atomic regions from SNP 68826 to 69426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,365 DEBUG chr8 total SNP count: 219467 2025-01-31 09:50:24,365 DEBUG chr8 length: 129401213 2025-01-31 09:50:24,365 DEBUG ----------------------------------------- 2025-01-31 09:50:24,365 INFO Processing SNPs in chr8 2025-01-31 09:50:24,464 DEBUG Processing 17/68 atomic regions from SNP 4832 to 5434 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:24,548 DEBUG Processing 231/854 atomic regions from SNP 69126 to 69726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,590 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219467)] 2025-01-31 09:50:24,739 DEBUG Processing 18/68 atomic regions from SNP 5134 to 5736 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:24,752 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:24,809 DEBUG Processing 232/854 atomic regions from SNP 69426 to 70026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,001 DEBUG Processing 19/68 atomic regions from SNP 5436 to 6038 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:25,068 DEBUG Processing 233/854 atomic regions from SNP 69726 to 70326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,285 DEBUG Processing 20/68 atomic regions from SNP 5738 to 6340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:25,318 DEBUG Processing 234/854 atomic regions from SNP 70026 to 70626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,543 DEBUG Processing 21/68 atomic regions from SNP 6040 to 6642 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:25,574 DEBUG Processing 235/854 atomic regions from SNP 70326 to 70926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,797 DEBUG Processing 22/68 atomic regions from SNP 6342 to 6944 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:25,832 DEBUG Processing 236/854 atomic regions from SNP 70626 to 71226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,047 DEBUG Processing 23/68 atomic regions from SNP 6644 to 7246 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:26,084 DEBUG Processing 237/854 atomic regions from SNP 70926 to 71526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,303 DEBUG Processing 24/68 atomic regions from SNP 6946 to 7548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:26,339 DEBUG Processing 238/854 atomic regions from SNP 71226 to 71826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,561 DEBUG Processing 25/68 atomic regions from SNP 7248 to 7850 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:26,597 DEBUG Processing 239/854 atomic regions from SNP 71526 to 72126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,817 DEBUG Processing 26/68 atomic regions from SNP 7550 to 8152 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:26,866 DEBUG Processing 240/854 atomic regions from SNP 71826 to 72426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,074 DEBUG Processing 27/68 atomic regions from SNP 7852 to 8454 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:27,116 DEBUG Processing 241/854 atomic regions from SNP 72126 to 72726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,323 DEBUG Processing 28/68 atomic regions from SNP 8154 to 8756 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:27,372 DEBUG Processing 242/854 atomic regions from SNP 72426 to 73026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,576 DEBUG Processing 29/68 atomic regions from SNP 8456 to 9058 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:27,623 DEBUG Processing 243/854 atomic regions from SNP 72726 to 73326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,873 DEBUG Processing 30/68 atomic regions from SNP 8758 to 9360 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:27,916 DEBUG Processing 244/854 atomic regions from SNP 73026 to 73626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,120 DEBUG Processing 31/68 atomic regions from SNP 9060 to 9662 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:28,165 DEBUG Processing 245/854 atomic regions from SNP 73326 to 73926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,362 DEBUG Processing 32/68 atomic regions from SNP 9362 to 9964 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:28,414 DEBUG Processing 246/854 atomic regions from SNP 73626 to 74226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,608 DEBUG Processing 33/68 atomic regions from SNP 9664 to 10266 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:28,663 DEBUG Processing 247/854 atomic regions from SNP 73926 to 74526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,865 DEBUG Processing 34/68 atomic regions from SNP 9966 to 10568 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:28,915 DEBUG Processing 248/854 atomic regions from SNP 74226 to 74826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,114 DEBUG Processing 35/68 atomic regions from SNP 10268 to 10870 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:29,167 DEBUG Processing 249/854 atomic regions from SNP 74526 to 75126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,404 DEBUG Processing 36/68 atomic regions from SNP 10570 to 11172 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:29,423 DEBUG Processing 250/854 atomic regions from SNP 74826 to 75426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,676 DEBUG Processing 37/68 atomic regions from SNP 10872 to 11474 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:29,679 DEBUG Processing 251/854 atomic regions from SNP 75126 to 75726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,925 DEBUG Processing 38/68 atomic regions from SNP 11174 to 11776 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:29,934 DEBUG Processing 252/854 atomic regions from SNP 75426 to 76026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,174 DEBUG Processing 39/68 atomic regions from SNP 11476 to 12078 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:30,188 DEBUG Processing 253/854 atomic regions from SNP 75726 to 76326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,435 DEBUG Processing 40/68 atomic regions from SNP 11778 to 12380 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:30,453 DEBUG Processing 254/854 atomic regions from SNP 76026 to 76626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,689 DEBUG Processing 41/68 atomic regions from SNP 12080 to 12682 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:30,707 DEBUG Processing 255/854 atomic regions from SNP 76326 to 76926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,941 DEBUG Processing 42/68 atomic regions from SNP 12382 to 12984 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:30,973 DEBUG Processing 256/854 atomic regions from SNP 76626 to 77226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,194 DEBUG Processing 43/68 atomic regions from SNP 12684 to 13286 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:31,234 DEBUG Processing 257/854 atomic regions from SNP 76926 to 77526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,450 DEBUG Processing 44/68 atomic regions from SNP 12986 to 13588 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:31,494 DEBUG Processing 258/854 atomic regions from SNP 77226 to 77826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,694 DEBUG Processing 45/68 atomic regions from SNP 13288 to 13890 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:31,772 DEBUG Processing 259/854 atomic regions from SNP 77526 to 78126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,943 DEBUG Processing 46/68 atomic regions from SNP 13590 to 14192 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:32,055 DEBUG Processing 260/854 atomic regions from SNP 77826 to 78426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,199 DEBUG Processing 47/68 atomic regions from SNP 13892 to 14494 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:32,320 DEBUG Processing 261/854 atomic regions from SNP 78126 to 78726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,480 DEBUG Processing 48/68 atomic regions from SNP 14194 to 14796 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:32,592 DEBUG Processing 262/854 atomic regions from SNP 78426 to 79026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,770 DEBUG Processing 49/68 atomic regions from SNP 14496 to 15098 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:32,845 DEBUG Processing 263/854 atomic regions from SNP 78726 to 79326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,060 DEBUG Processing 50/68 atomic regions from SNP 14798 to 15400 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:33,099 DEBUG Processing 264/854 atomic regions from SNP 79026 to 79626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,360 DEBUG Processing 51/68 atomic regions from SNP 15100 to 15702 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:33,366 DEBUG Processing 265/854 atomic regions from SNP 79326 to 79926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,617 DEBUG Processing 52/68 atomic regions from SNP 15402 to 16004 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:33,619 DEBUG Processing 266/854 atomic regions from SNP 79626 to 80226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,886 DEBUG Processing 53/68 atomic regions from SNP 15704 to 16306 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:33,888 DEBUG Processing 267/854 atomic regions from SNP 79926 to 80526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,173 DEBUG Processing 268/854 atomic regions from SNP 80226 to 80826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,174 DEBUG Processing 54/68 atomic regions from SNP 16006 to 16608 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,438 DEBUG Processing 55/68 atomic regions from SNP 16308 to 16910 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,441 DEBUG Processing 269/854 atomic regions from SNP 80526 to 81126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,689 DEBUG Processing 56/68 atomic regions from SNP 16610 to 17212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,700 DEBUG Processing 270/854 atomic regions from SNP 80826 to 81426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,942 DEBUG Processing 57/68 atomic regions from SNP 16912 to 17514 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,959 DEBUG Processing 271/854 atomic regions from SNP 81126 to 81726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,195 DEBUG Processing 58/68 atomic regions from SNP 17214 to 17816 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,216 DEBUG Processing 272/854 atomic regions from SNP 81426 to 82026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,448 DEBUG Processing 59/68 atomic regions from SNP 17516 to 18118 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,470 DEBUG Processing 273/854 atomic regions from SNP 81726 to 82326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,695 DEBUG Processing 60/68 atomic regions from SNP 17818 to 18420 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,720 DEBUG Processing 274/854 atomic regions from SNP 82026 to 82626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,941 DEBUG Processing 61/68 atomic regions from SNP 18120 to 18722 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,967 DEBUG Processing 275/854 atomic regions from SNP 82326 to 82926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,194 DEBUG Processing 62/68 atomic regions from SNP 18422 to 19023 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:36,223 DEBUG Processing 276/854 atomic regions from SNP 82626 to 83226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,467 DEBUG Processing 63/68 atomic regions from SNP 18723 to 19324 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:36,476 DEBUG Processing 277/854 atomic regions from SNP 82926 to 83526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,701 DEBUG Subchromosome time: 392.79999478603713, subchromosome SNPs: 306323 2025-01-31 09:50:36,705 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:36,728 DEBUG Processing 278/854 atomic regions from SNP 83226 to 83826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,755 DEBUG Processing 64/68 atomic regions from SNP 19024 to 19625 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:36,983 DEBUG Processing 279/854 atomic regions from SNP 83526 to 84126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,039 DEBUG Processing 65/68 atomic regions from SNP 19325 to 19926 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:37,244 DEBUG Processing 280/854 atomic regions from SNP 83826 to 84426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,321 DEBUG Processing 66/68 atomic regions from SNP 19626 to 20227 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:37,512 DEBUG Processing 281/854 atomic regions from SNP 84126 to 84726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,598 DEBUG Processing 67/68 atomic regions from SNP 19927 to 20528 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:37,680 DEBUG Segmenting atomic regions: 2025-01-31 09:50:37,776 DEBUG Processing 282/854 atomic regions from SNP 84426 to 85026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,825 DEBUG Processing 1/25 atomic regions from SNP 0 to 602 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:37,860 DEBUG Processing 68/68 atomic regions from SNP 20228 to 20829 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:38,008 DEBUG Unique SNPs positions in subchromosome 1: 20830 2025-01-31 09:50:38,039 DEBUG Processing 283/854 atomic regions from SNP 84726 to 85326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,107 DEBUG Subchromosome time: 20.688087863032706, subchromosome SNPs: 20830 2025-01-31 09:50:38,126 DEBUG Processing 2/25 atomic regions from SNP 302 to 904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:38,166 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:38,277 DEBUG Processing 284/854 atomic regions from SNP 85026 to 85626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,419 DEBUG Processing 3/25 atomic regions from SNP 604 to 1206 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:38,521 DEBUG Processing 285/854 atomic regions from SNP 85326 to 85926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,710 DEBUG Processing 4/25 atomic regions from SNP 906 to 1508 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:38,762 DEBUG Processing 286/854 atomic regions from SNP 85626 to 86226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,003 DEBUG Processing 287/854 atomic regions from SNP 85926 to 86526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,010 DEBUG Processing 5/25 atomic regions from SNP 1208 to 1810 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:39,248 DEBUG Processing 288/854 atomic regions from SNP 86226 to 86826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,293 DEBUG Processing 6/25 atomic regions from SNP 1510 to 2112 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:39,494 DEBUG Processing 289/854 atomic regions from SNP 86526 to 87126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,576 DEBUG Processing 7/25 atomic regions from SNP 1812 to 2414 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:39,746 DEBUG Processing 290/854 atomic regions from SNP 86826 to 87426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,863 DEBUG Processing 8/25 atomic regions from SNP 2114 to 2716 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:40,007 DEBUG Processing 291/854 atomic regions from SNP 87126 to 87726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,150 DEBUG Processing 9/25 atomic regions from SNP 2416 to 3018 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:40,258 DEBUG Processing 292/854 atomic regions from SNP 87426 to 88026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,436 DEBUG Processing 10/25 atomic regions from SNP 2718 to 3320 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:40,518 DEBUG Processing 293/854 atomic regions from SNP 87726 to 88326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,716 DEBUG Processing 11/25 atomic regions from SNP 3020 to 3622 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:40,767 DEBUG Processing 294/854 atomic regions from SNP 88026 to 88626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,990 DEBUG Processing 12/25 atomic regions from SNP 3322 to 3924 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:41,009 DEBUG Processing 295/854 atomic regions from SNP 88326 to 88926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,250 DEBUG Processing 296/854 atomic regions from SNP 88626 to 89226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,285 DEBUG Processing 13/25 atomic regions from SNP 3624 to 4226 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:41,490 DEBUG Processing 297/854 atomic regions from SNP 88926 to 89526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,605 DEBUG Processing 14/25 atomic regions from SNP 3926 to 4528 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:41,728 DEBUG Processing 298/854 atomic regions from SNP 89226 to 89826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,931 DEBUG Processing 15/25 atomic regions from SNP 4228 to 4830 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:41,966 DEBUG Processing 299/854 atomic regions from SNP 89526 to 90126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,206 DEBUG Processing 300/854 atomic regions from SNP 89826 to 90426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,248 DEBUG Processing 16/25 atomic regions from SNP 4530 to 5132 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:42,485 DEBUG Processing 301/854 atomic regions from SNP 90126 to 90726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,566 DEBUG Processing 17/25 atomic regions from SNP 4832 to 5434 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:42,762 DEBUG Processing 302/854 atomic regions from SNP 90426 to 91026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,888 DEBUG Processing 18/25 atomic regions from SNP 5134 to 5736 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:43,032 DEBUG Processing 303/854 atomic regions from SNP 90726 to 91326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,219 DEBUG Processing 19/25 atomic regions from SNP 5436 to 6038 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:43,304 DEBUG Processing 304/854 atomic regions from SNP 91026 to 91626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,530 DEBUG Processing 20/25 atomic regions from SNP 5738 to 6340 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:43,557 DEBUG Processing 305/854 atomic regions from SNP 91326 to 91926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,809 DEBUG Processing 306/854 atomic regions from SNP 91626 to 92226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,846 DEBUG Processing 21/25 atomic regions from SNP 6040 to 6642 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:44,065 DEBUG Processing 307/854 atomic regions from SNP 91926 to 92526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,174 DEBUG Processing 22/25 atomic regions from SNP 6342 to 6944 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:44,327 DEBUG Processing 308/854 atomic regions from SNP 92226 to 92826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,502 DEBUG Processing 23/25 atomic regions from SNP 6644 to 7246 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:44,588 DEBUG Processing 309/854 atomic regions from SNP 92526 to 93126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,818 DEBUG Processing 24/25 atomic regions from SNP 6946 to 7548 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:44,847 DEBUG Processing 310/854 atomic regions from SNP 92826 to 93426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,110 DEBUG Processing 311/854 atomic regions from SNP 93126 to 93726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,140 DEBUG Processing 25/25 atomic regions from SNP 7248 to 7850 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:45,307 DEBUG Unique SNPs positions in subchromosome 2: 7851 2025-01-31 09:50:45,318 DEBUG Subchromosome time: 8.613497981918044, subchromosome SNPs: 7851 2025-01-31 09:50:45,319 DEBUG Estimated BADs: [1.58, 0.40, 1.58, 0.79, 3.17, 0.79, 4.75, 3.17, 0.40, 3.17, 0.32, 0.79, 0.26, 0.79, 0.32, 0.79, 0.32, 1.58, 0.40, 0.79, 4.75, 0.26, 3.17, 0.26, 1.58, 0.79, 3.17, 0.53, 1.58, 3.17, 1.58, 0.79, 3.17, 1.58, 3.17, 6.33, 1.58, 1.58, 6.33] SNP counts: [7921, 2993, 5993, 9380, 3223, 8601, 14811, 6634, 1137, 4373, 7723, 3537, 3584, 9594, 5125, 17416, 2963, 23992, 3604, 2405, 1195, 7195, 8707, 9906, 9317, 22042, 7051, 2692, 5904, 9416, 7180, 25814, 14092, 8597, 7089, 2011, 13106, 3495, 4356] SNP IDs counts: [7921, 2993, 5993, 9380, 3223, 8601, 14811, 6634, 1137, 4373, 7723, 3537, 3584, 9594, 5125, 17416, 2963, 23992, 3604, 2405, 1195, 7195, 8707, 9906, 9317, 22042, 7051, 2692, 5904, 9416, 7180, 25814, 14092, 8597, 7089, 2011, 13106, 3495, 4356] Critical gap: 727429bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.39Mbp, 9.18Mbp, 12.52Mbp, 18.02Mbp, 19.80Mbp, 24.91Mbp, 32.77Mbp, 36.25Mbp, 36.98Mbp, 39.38Mbp, 43.93Mbp, 45.84Mbp, 48.01Mbp, 53.27Mbp, 56.46Mbp, 66.26Mbp, 67.96Mbp, 80.94Mbp, 83.11Mbp, 84.65Mbp, 85.30Mbp, 89.75Mbp, 94.61Mbp, 101.03Mbp, 106.08Mbp, 118.63Mbp, 122.39Mbp, 123.98Mbp, 127.20Mbp, 132.25Mbp, 136.18Mbp, 150.74Mbp, 158.56Mbp, 163.23Mbp, 166.99Mbp, 168.06Mbp, 175.18Mbp[1.52Mbp], 179.68Mbp, 182.11Mbp] 2025-01-31 09:50:45,319 DEBUG chr2 time: 8.614152760012075 s 2025-01-31 09:50:45,372 DEBUG Processing 312/854 atomic regions from SNP 93426 to 94026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,534 DEBUG chr2: Fitting background model for 39 segments 2025-01-31 09:50:45,648 DEBUG Processing 313/854 atomic regions from SNP 93726 to 94326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,915 DEBUG Processing 314/854 atomic regions from SNP 94026 to 94626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,184 DEBUG Processing 315/854 atomic regions from SNP 94326 to 94926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,434 DEBUG Processing 316/854 atomic regions from SNP 94626 to 95226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,687 DEBUG Processing 317/854 atomic regions from SNP 94926 to 95526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,943 DEBUG Processing 318/854 atomic regions from SNP 95226 to 95826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,214 DEBUG Processing 319/854 atomic regions from SNP 95526 to 96126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,469 DEBUG Processing 320/854 atomic regions from SNP 95826 to 96426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,720 DEBUG Processing 321/854 atomic regions from SNP 96126 to 96726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,971 DEBUG Processing 322/854 atomic regions from SNP 96426 to 97026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,224 DEBUG Processing 323/854 atomic regions from SNP 96726 to 97326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,385 DEBUG Segmenting atomic regions: 2025-01-31 09:50:48,486 DEBUG Processing 324/854 atomic regions from SNP 97026 to 97626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,487 DEBUG Processing 1/747 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,738 DEBUG Processing 2/747 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,751 DEBUG Processing 325/854 atomic regions from SNP 97326 to 97926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,987 DEBUG Processing 3/747 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,011 DEBUG Processing 326/854 atomic regions from SNP 97626 to 98226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,250 DEBUG Processing 4/747 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,277 DEBUG Processing 327/854 atomic regions from SNP 97926 to 98526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,502 DEBUG Processing 5/747 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,545 DEBUG Processing 328/854 atomic regions from SNP 98226 to 98826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,746 DEBUG Processing 6/747 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,811 DEBUG Processing 329/854 atomic regions from SNP 98526 to 99126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,989 DEBUG Processing 7/747 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,076 DEBUG Processing 330/854 atomic regions from SNP 98826 to 99426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,244 DEBUG Processing 8/747 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,339 DEBUG Processing 331/854 atomic regions from SNP 99126 to 99726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,507 DEBUG Processing 9/747 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,598 DEBUG Processing 332/854 atomic regions from SNP 99426 to 100026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,745 DEBUG Processing 10/747 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,852 DEBUG Processing 333/854 atomic regions from SNP 99726 to 100326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,987 DEBUG Processing 11/747 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,104 DEBUG Processing 334/854 atomic regions from SNP 100026 to 100626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,226 DEBUG Processing 12/747 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,357 DEBUG Processing 335/854 atomic regions from SNP 100326 to 100926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,467 DEBUG Processing 13/747 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,609 DEBUG Processing 336/854 atomic regions from SNP 100626 to 101226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,707 DEBUG Processing 14/747 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,873 DEBUG Processing 337/854 atomic regions from SNP 100926 to 101526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,957 DEBUG Processing 15/747 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,126 DEBUG Processing 338/854 atomic regions from SNP 101226 to 101826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,202 DEBUG Processing 16/747 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,377 DEBUG Processing 339/854 atomic regions from SNP 101526 to 102126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,469 DEBUG Processing 17/747 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,548 DEBUG Segmenting atomic regions: 2025-01-31 09:50:52,624 DEBUG Processing 340/854 atomic regions from SNP 101826 to 102426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,648 DEBUG Processing 1/730 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,714 DEBUG Processing 18/747 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,881 DEBUG Processing 341/854 atomic regions from SNP 102126 to 102726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,896 DEBUG Processing 2/730 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,961 DEBUG Processing 19/747 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,138 DEBUG Processing 342/854 atomic regions from SNP 102426 to 103026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,163 DEBUG Processing 3/730 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,212 DEBUG Processing 20/747 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,393 DEBUG Processing 343/854 atomic regions from SNP 102726 to 103326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,441 DEBUG Processing 4/730 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,464 DEBUG Processing 21/747 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,648 DEBUG Processing 344/854 atomic regions from SNP 103026 to 103626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,709 DEBUG Processing 5/730 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,712 DEBUG Processing 22/747 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,904 DEBUG Processing 345/854 atomic regions from SNP 103326 to 103926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,960 DEBUG Processing 23/747 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,961 DEBUG Processing 6/730 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,163 DEBUG Processing 346/854 atomic regions from SNP 103626 to 104226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,207 DEBUG Processing 24/747 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,230 DEBUG Processing 7/730 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,421 DEBUG Processing 347/854 atomic regions from SNP 103926 to 104526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,455 DEBUG Processing 25/747 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,507 DEBUG Processing 8/730 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,682 DEBUG Processing 348/854 atomic regions from SNP 104226 to 104826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,715 DEBUG Processing 26/747 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,757 DEBUG Processing 9/730 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,939 DEBUG Processing 349/854 atomic regions from SNP 104526 to 105126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,988 DEBUG Processing 27/747 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,005 DEBUG Processing 10/730 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,195 DEBUG Processing 350/854 atomic regions from SNP 104826 to 105426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,241 DEBUG Processing 28/747 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,259 DEBUG Processing 11/730 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,456 DEBUG Processing 351/854 atomic regions from SNP 105126 to 105726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,492 DEBUG Processing 29/747 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,523 DEBUG Processing 12/730 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,715 DEBUG Processing 352/854 atomic regions from SNP 105426 to 106026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,737 DEBUG Processing 30/747 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,772 DEBUG Processing 13/730 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,983 DEBUG Processing 353/854 atomic regions from SNP 105726 to 106326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,987 DEBUG Processing 31/747 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,035 DEBUG Processing 14/730 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,235 DEBUG Processing 32/747 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,245 DEBUG Processing 354/854 atomic regions from SNP 106026 to 106626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,290 DEBUG Processing 15/730 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,482 DEBUG Processing 33/747 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,508 DEBUG Processing 355/854 atomic regions from SNP 106326 to 106926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,548 DEBUG Processing 16/730 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,723 DEBUG Processing 34/747 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,767 DEBUG Processing 356/854 atomic regions from SNP 106626 to 107226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,800 DEBUG Processing 17/730 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,962 DEBUG Processing 35/747 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,024 DEBUG Processing 357/854 atomic regions from SNP 106926 to 107526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,051 DEBUG Processing 18/730 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,203 DEBUG Processing 36/747 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,287 DEBUG Processing 358/854 atomic regions from SNP 107226 to 107826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,303 DEBUG Processing 19/730 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,444 DEBUG Processing 37/747 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,550 DEBUG Processing 359/854 atomic regions from SNP 107526 to 108126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,555 DEBUG Processing 20/730 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,688 DEBUG Processing 38/747 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,804 DEBUG Processing 21/730 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,813 DEBUG Processing 360/854 atomic regions from SNP 107826 to 108426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,931 DEBUG Processing 39/747 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,052 DEBUG Processing 22/730 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,074 DEBUG Processing 361/854 atomic regions from SNP 108126 to 108726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,177 DEBUG Processing 40/747 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,301 DEBUG Processing 23/730 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,336 DEBUG Processing 362/854 atomic regions from SNP 108426 to 109026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,428 DEBUG Processing 41/747 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,559 DEBUG Processing 24/730 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,603 DEBUG Processing 363/854 atomic regions from SNP 108726 to 109326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,681 DEBUG Processing 42/747 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,813 DEBUG Processing 25/730 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,868 DEBUG Processing 364/854 atomic regions from SNP 109026 to 109626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,928 DEBUG Processing 43/747 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,061 DEBUG Processing 26/730 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,129 DEBUG Processing 365/854 atomic regions from SNP 109326 to 109926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,178 DEBUG Processing 44/747 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,314 DEBUG Processing 27/730 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,391 DEBUG Processing 366/854 atomic regions from SNP 109626 to 110226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,424 DEBUG Processing 45/747 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,564 DEBUG Processing 28/730 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,650 DEBUG Processing 367/854 atomic regions from SNP 109926 to 110526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,666 DEBUG Processing 46/747 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,812 DEBUG Processing 29/730 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,909 DEBUG Processing 368/854 atomic regions from SNP 110226 to 110826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,914 DEBUG Processing 47/747 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,063 DEBUG Processing 30/730 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,159 DEBUG Processing 48/747 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,168 DEBUG Processing 369/854 atomic regions from SNP 110526 to 111126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,314 DEBUG Processing 31/730 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,406 DEBUG Processing 49/747 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,429 DEBUG Processing 370/854 atomic regions from SNP 110826 to 111426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,569 DEBUG Processing 32/730 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,654 DEBUG Processing 50/747 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,705 DEBUG Processing 371/854 atomic regions from SNP 111126 to 111726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,821 DEBUG Processing 33/730 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,905 DEBUG Processing 51/747 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,001 DEBUG Processing 372/854 atomic regions from SNP 111426 to 112026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,085 DEBUG Processing 34/730 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,150 DEBUG Processing 52/747 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,289 DEBUG Processing 373/854 atomic regions from SNP 111726 to 112326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,334 DEBUG Processing 35/730 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,401 DEBUG Processing 53/747 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,557 DEBUG Processing 374/854 atomic regions from SNP 112026 to 112626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,588 DEBUG Processing 36/730 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,652 DEBUG Processing 54/747 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,811 DEBUG Processing 375/854 atomic regions from SNP 112326 to 112926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,833 DEBUG Processing 37/730 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,896 DEBUG Processing 55/747 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,072 DEBUG Processing 376/854 atomic regions from SNP 112626 to 113226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,080 DEBUG Processing 38/730 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,136 DEBUG Processing 56/747 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,337 DEBUG Processing 377/854 atomic regions from SNP 112926 to 113526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,342 DEBUG Processing 39/730 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,393 DEBUG Processing 57/747 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,600 DEBUG Processing 40/730 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,606 DEBUG Processing 378/854 atomic regions from SNP 113226 to 113826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,664 DEBUG Processing 58/747 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,854 DEBUG Processing 41/730 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,872 DEBUG Processing 379/854 atomic regions from SNP 113526 to 114126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,911 DEBUG Processing 59/747 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,114 DEBUG Processing 42/730 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,147 DEBUG Processing 380/854 atomic regions from SNP 113826 to 114426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,154 DEBUG Processing 60/747 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,372 DEBUG Processing 43/730 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,407 DEBUG Processing 61/747 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,416 DEBUG Processing 381/854 atomic regions from SNP 114126 to 114726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,627 DEBUG Processing 44/730 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,660 DEBUG Processing 62/747 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,683 DEBUG Processing 382/854 atomic regions from SNP 114426 to 115026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,889 DEBUG Processing 45/730 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,921 DEBUG Processing 63/747 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,947 DEBUG Processing 383/854 atomic regions from SNP 114726 to 115326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,168 DEBUG Processing 46/730 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,198 DEBUG Processing 64/747 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,212 DEBUG Processing 384/854 atomic regions from SNP 115026 to 115626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,434 DEBUG Processing 47/730 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,466 DEBUG Processing 65/747 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,485 DEBUG Processing 385/854 atomic regions from SNP 115326 to 115926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,508 DEBUG Segmenting atomic regions: 2025-01-31 09:51:04,613 DEBUG Processing 1/701 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,688 DEBUG Processing 48/730 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,721 DEBUG Processing 66/747 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,758 DEBUG Processing 386/854 atomic regions from SNP 115626 to 116226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,850 DEBUG Processing 2/701 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,964 DEBUG Processing 49/730 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,978 DEBUG Processing 67/747 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,026 DEBUG Processing 387/854 atomic regions from SNP 115926 to 116526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,095 DEBUG Processing 3/701 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,228 DEBUG Processing 68/747 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,253 DEBUG Processing 50/730 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,299 DEBUG Processing 388/854 atomic regions from SNP 116226 to 116826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,342 DEBUG Processing 4/701 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,478 DEBUG Processing 69/747 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,521 DEBUG Processing 51/730 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,570 DEBUG Processing 389/854 atomic regions from SNP 116526 to 117126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,595 DEBUG Processing 5/701 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,722 DEBUG Processing 70/747 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,773 DEBUG Processing 52/730 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,841 DEBUG Processing 390/854 atomic regions from SNP 116826 to 117426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,869 DEBUG Processing 6/701 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,966 DEBUG Processing 71/747 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,023 DEBUG Processing 53/730 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,137 DEBUG Processing 391/854 atomic regions from SNP 117126 to 117726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,152 DEBUG Subchromosome time: 421.32543028204236, subchromosome SNPs: 339494 2025-01-31 09:51:06,153 DEBUG Estimated BADs: [0.79, 0.52, 3.15, 1.57, 7.86, 0.79, 3.15, 1.57, 3.15, 1.57, 3.15, 0.79, 3.15, 7.86, 1.57, 3.15, 15.73, 3.15, 0.52, 1.57, 0.39, 3.15, 1.57, 0.52, 1.57, 4.72, 1.57, 0.39, 1.57, 0.39, 1.57, 3.15, 1.57, 3.15, 1.57, 7.86, 3.15, 1.57, 4.72, 3.15, 1.57, 6.29, 1.57] SNP counts: [23007, 28705, 11286, 8409, 146, 13199, 1039, 10214, 2767, 5097, 4626, 12484, 3813, 2203, 16693, 1803, 427, 14259, 17110, 5704, 17428, 3567, 4468, 1831, 12570, 10239, 6274, 5419, 2501, 8564, 2740, 10829, 5794, 13295, 6290, 991, 1500, 10676, 5522, 7582, 10130, 2390, 5903] SNP IDs counts: [23007, 28705, 11286, 8409, 146, 13199, 1039, 10214, 2767, 5097, 4626, 12484, 3813, 2203, 16693, 1803, 427, 14259, 17110, 5704, 17428, 3567, 4468, 1831, 12570, 10239, 6274, 5419, 2501, 8564, 2740, 10829, 5794, 13295, 6290, 991, 1500, 10676, 5522, 7582, 10130, 2390, 5903] Critical gap: 758718bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.60Mbp, 33.49Mbp, 39.56Mbp, 44.10Mbp, 44.18Mbp, 52.10Mbp, 52.67Mbp, 58.39Mbp, 59.89Mbp, 62.70Mbp, 65.21Mbp, 72.21Mbp, 74.27Mbp, 75.50Mbp, 84.85Mbp, 86.31Mbp, 86.54Mbp, 94.32Mbp, 104.54Mbp, 107.75Mbp, 118.31Mbp, 120.19Mbp, 122.68Mbp, 123.71Mbp, 130.70Mbp, 136.10Mbp, 139.54Mbp, 142.86Mbp, 144.41Mbp, 149.54Mbp, 151.08Mbp, 156.92Mbp, 160.04Mbp, 167.39Mbp, 170.83Mbp, 171.38Mbp, 172.21Mbp, 178.30Mbp, 181.23Mbp, 185.40Mbp, 190.82Mbp, 192.14Mbp, 195.47Mbp] 2025-01-31 09:51:06,153 DEBUG chr1 time: 421.3263169180136 s 2025-01-31 09:51:06,155 DEBUG Processing 7/701 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,210 DEBUG Processing 72/747 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,288 DEBUG Processing 54/730 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,380 DEBUG chr1: Fitting background model for 43 segments 2025-01-31 09:51:06,410 DEBUG Processing 392/854 atomic regions from SNP 117426 to 118026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,431 DEBUG Processing 8/701 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,459 DEBUG Processing 73/747 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,532 DEBUG Processing 55/730 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,679 DEBUG Processing 393/854 atomic regions from SNP 117726 to 118326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,707 DEBUG Processing 9/701 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,713 DEBUG Processing 74/747 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,784 DEBUG Processing 56/730 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,955 DEBUG Processing 394/854 atomic regions from SNP 118026 to 118626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,970 DEBUG Processing 75/747 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,005 DEBUG Processing 10/701 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,044 DEBUG Processing 57/730 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,225 DEBUG Processing 76/747 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,241 DEBUG Processing 395/854 atomic regions from SNP 118326 to 118926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,294 DEBUG Processing 11/701 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,315 DEBUG Processing 58/730 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,474 DEBUG Processing 77/747 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,521 DEBUG Processing 396/854 atomic regions from SNP 118626 to 119226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,585 DEBUG Processing 12/701 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,600 DEBUG Processing 59/730 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,726 DEBUG Processing 78/747 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,813 DEBUG Processing 397/854 atomic regions from SNP 118926 to 119526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,864 DEBUG Processing 13/701 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,889 DEBUG Processing 60/730 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,975 DEBUG Processing 79/747 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,092 DEBUG Processing 398/854 atomic regions from SNP 119226 to 119826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,151 DEBUG Processing 14/701 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,159 DEBUG Processing 61/730 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,221 DEBUG Processing 80/747 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,384 DEBUG Processing 399/854 atomic regions from SNP 119526 to 120126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,416 DEBUG Processing 62/730 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,436 DEBUG Processing 15/701 atomic regions from SNP 4214 to 4814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,473 DEBUG Processing 81/747 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,667 DEBUG Processing 63/730 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,683 DEBUG Processing 400/854 atomic regions from SNP 119826 to 120426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,690 DEBUG Processing 16/701 atomic regions from SNP 4514 to 5114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,723 DEBUG Processing 82/747 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,931 DEBUG Processing 64/730 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,943 DEBUG Processing 17/701 atomic regions from SNP 4814 to 5414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,975 DEBUG Processing 83/747 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,988 DEBUG Processing 401/854 atomic regions from SNP 120126 to 120726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,181 DEBUG Processing 65/730 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,193 DEBUG Processing 18/701 atomic regions from SNP 5114 to 5714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,227 DEBUG Processing 84/747 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,295 DEBUG Processing 402/854 atomic regions from SNP 120426 to 121026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,432 DEBUG Processing 66/730 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,440 DEBUG Processing 19/701 atomic regions from SNP 5414 to 6014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,486 DEBUG Processing 85/747 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,579 DEBUG Processing 403/854 atomic regions from SNP 120726 to 121326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,682 DEBUG Processing 67/730 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,689 DEBUG Processing 20/701 atomic regions from SNP 5714 to 6314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,743 DEBUG Processing 86/747 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,865 DEBUG Processing 404/854 atomic regions from SNP 121026 to 121626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,934 DEBUG Processing 68/730 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,938 DEBUG Processing 21/701 atomic regions from SNP 6014 to 6614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,987 DEBUG Processing 87/747 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,139 DEBUG Processing 405/854 atomic regions from SNP 121326 to 121926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,189 DEBUG Processing 69/730 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,222 DEBUG Processing 22/701 atomic regions from SNP 6314 to 6914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,234 DEBUG Processing 88/747 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,411 DEBUG Processing 406/854 atomic regions from SNP 121626 to 122226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,469 DEBUG Processing 70/730 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,487 DEBUG Processing 89/747 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,511 DEBUG Processing 23/701 atomic regions from SNP 6614 to 7214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,676 DEBUG Processing 407/854 atomic regions from SNP 121926 to 122526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,742 DEBUG Processing 71/730 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,751 DEBUG Processing 90/747 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,795 DEBUG Processing 24/701 atomic regions from SNP 6914 to 7514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,941 DEBUG Processing 408/854 atomic regions from SNP 122226 to 122826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,002 DEBUG Processing 72/730 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,009 DEBUG Processing 91/747 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,087 DEBUG Processing 25/701 atomic regions from SNP 7214 to 7814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,201 DEBUG Processing 409/854 atomic regions from SNP 122526 to 123126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,260 DEBUG Processing 73/730 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,263 DEBUG Processing 92/747 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,351 DEBUG Processing 26/701 atomic regions from SNP 7514 to 8114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,464 DEBUG Processing 410/854 atomic regions from SNP 122826 to 123426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,517 DEBUG Processing 74/730 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,517 DEBUG Processing 93/747 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,606 DEBUG Processing 27/701 atomic regions from SNP 7814 to 8414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,724 DEBUG Processing 411/854 atomic regions from SNP 123126 to 123726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,782 DEBUG Processing 75/730 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,786 DEBUG Processing 94/747 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,885 DEBUG Processing 28/701 atomic regions from SNP 8114 to 8714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,983 DEBUG Processing 412/854 atomic regions from SNP 123426 to 124026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,040 DEBUG Processing 76/730 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,044 DEBUG Processing 95/747 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,165 DEBUG Processing 29/701 atomic regions from SNP 8414 to 9014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,242 DEBUG Processing 413/854 atomic regions from SNP 123726 to 124326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,297 DEBUG Processing 77/730 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,302 DEBUG Processing 96/747 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,444 DEBUG Processing 30/701 atomic regions from SNP 8714 to 9314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,504 DEBUG Processing 414/854 atomic regions from SNP 124026 to 124626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,554 DEBUG Processing 78/730 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,558 DEBUG Processing 97/747 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,729 DEBUG Processing 31/701 atomic regions from SNP 9014 to 9614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,767 DEBUG Processing 415/854 atomic regions from SNP 124326 to 124926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,826 DEBUG Processing 98/747 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,828 DEBUG Processing 79/730 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,017 DEBUG Processing 32/701 atomic regions from SNP 9314 to 9914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,033 DEBUG Processing 416/854 atomic regions from SNP 124626 to 125226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,088 DEBUG Processing 80/730 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,104 DEBUG Processing 99/747 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,302 DEBUG Processing 417/854 atomic regions from SNP 124926 to 125526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,305 DEBUG Processing 33/701 atomic regions from SNP 9614 to 10214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,356 DEBUG Processing 81/730 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,384 DEBUG Processing 100/747 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,575 DEBUG Processing 418/854 atomic regions from SNP 125226 to 125826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,589 DEBUG Processing 34/701 atomic regions from SNP 9914 to 10514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,624 DEBUG Processing 82/730 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,674 DEBUG Processing 101/747 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,834 DEBUG Processing 419/854 atomic regions from SNP 125526 to 126126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,868 DEBUG Processing 35/701 atomic regions from SNP 10214 to 10814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,885 DEBUG Processing 83/730 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,940 DEBUG Processing 102/747 atomic regions from SNP 30401 to 31001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,094 DEBUG Processing 420/854 atomic regions from SNP 125826 to 126426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,136 DEBUG Processing 36/701 atomic regions from SNP 10514 to 11114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,143 DEBUG Processing 84/730 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,197 DEBUG Processing 103/747 atomic regions from SNP 30701 to 31301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,355 DEBUG Processing 421/854 atomic regions from SNP 126126 to 126726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,394 DEBUG Processing 37/701 atomic regions from SNP 10814 to 11414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,402 DEBUG Processing 85/730 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,451 DEBUG Processing 104/747 atomic regions from SNP 31001 to 31601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,617 DEBUG Processing 422/854 atomic regions from SNP 126426 to 127026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,657 DEBUG Processing 38/701 atomic regions from SNP 11114 to 11714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,660 DEBUG Processing 86/730 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,708 DEBUG Processing 105/747 atomic regions from SNP 31301 to 31901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,873 DEBUG Processing 423/854 atomic regions from SNP 126726 to 127326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,911 DEBUG Processing 87/730 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,922 DEBUG Processing 39/701 atomic regions from SNP 11414 to 12014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,963 DEBUG Processing 106/747 atomic regions from SNP 31601 to 32201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,139 DEBUG Processing 424/854 atomic regions from SNP 127026 to 127626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,178 DEBUG Processing 88/730 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,199 DEBUG Processing 40/701 atomic regions from SNP 11714 to 12314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,235 DEBUG Processing 107/747 atomic regions from SNP 31901 to 32501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,402 DEBUG Processing 425/854 atomic regions from SNP 127326 to 127926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,434 DEBUG Processing 89/730 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,486 DEBUG Processing 41/701 atomic regions from SNP 12014 to 12614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,498 DEBUG Processing 108/747 atomic regions from SNP 32201 to 32801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,665 DEBUG Processing 426/854 atomic regions from SNP 127626 to 128226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,687 DEBUG Processing 90/730 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,750 DEBUG Processing 109/747 atomic regions from SNP 32501 to 33101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,767 DEBUG Processing 42/701 atomic regions from SNP 12314 to 12914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,930 DEBUG Processing 427/854 atomic regions from SNP 127926 to 128526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,942 DEBUG Processing 91/730 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,004 DEBUG Processing 110/747 atomic regions from SNP 32801 to 33401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,054 DEBUG Processing 43/701 atomic regions from SNP 12614 to 13214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,192 DEBUG Processing 428/854 atomic regions from SNP 128226 to 128826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,202 DEBUG Processing 92/730 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,256 DEBUG Processing 111/747 atomic regions from SNP 33101 to 33701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,325 DEBUG Processing 44/701 atomic regions from SNP 12914 to 13514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,456 DEBUG Processing 429/854 atomic regions from SNP 128526 to 129126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,472 DEBUG Processing 93/730 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,515 DEBUG Processing 112/747 atomic regions from SNP 33401 to 34001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,587 DEBUG Processing 45/701 atomic regions from SNP 13214 to 13814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,717 DEBUG Processing 430/854 atomic regions from SNP 128826 to 129426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,724 DEBUG Processing 94/730 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,771 DEBUG Processing 113/747 atomic regions from SNP 33701 to 34301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,834 DEBUG Processing 46/701 atomic regions from SNP 13514 to 14114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,978 DEBUG Processing 431/854 atomic regions from SNP 129126 to 129726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,978 DEBUG Processing 95/730 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,027 DEBUG Processing 114/747 atomic regions from SNP 34001 to 34601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,082 DEBUG Processing 47/701 atomic regions from SNP 13814 to 14414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,232 DEBUG Processing 96/730 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,254 DEBUG Processing 432/854 atomic regions from SNP 129426 to 130026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,303 DEBUG Processing 115/747 atomic regions from SNP 34301 to 34901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,342 DEBUG Processing 48/701 atomic regions from SNP 14114 to 14714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,473 DEBUG Processing 97/730 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,512 DEBUG Processing 433/854 atomic regions from SNP 129726 to 130326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,552 DEBUG Processing 116/747 atomic regions from SNP 34601 to 35201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,593 DEBUG Processing 49/701 atomic regions from SNP 14414 to 15014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,714 DEBUG Processing 98/730 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,769 DEBUG Processing 434/854 atomic regions from SNP 130026 to 130626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,822 DEBUG Processing 117/747 atomic regions from SNP 34901 to 35501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,849 DEBUG Processing 50/701 atomic regions from SNP 14714 to 15314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,956 DEBUG Processing 99/730 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,032 DEBUG Processing 435/854 atomic regions from SNP 130326 to 130926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,080 DEBUG Processing 118/747 atomic regions from SNP 35201 to 35801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,103 DEBUG Processing 51/701 atomic regions from SNP 15014 to 15614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,197 DEBUG Processing 100/730 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,294 DEBUG Processing 436/854 atomic regions from SNP 130626 to 131226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,337 DEBUG Processing 119/747 atomic regions from SNP 35501 to 36101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,359 DEBUG Processing 52/701 atomic regions from SNP 15314 to 15914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,436 DEBUG Processing 101/730 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,557 DEBUG Processing 437/854 atomic regions from SNP 130926 to 131526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,594 DEBUG Processing 120/747 atomic regions from SNP 35801 to 36401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,616 DEBUG Processing 53/701 atomic regions from SNP 15614 to 16214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,692 DEBUG Processing 102/730 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,810 DEBUG Processing 438/854 atomic regions from SNP 131226 to 131826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,850 DEBUG Processing 121/747 atomic regions from SNP 36101 to 36701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,875 DEBUG Processing 54/701 atomic regions from SNP 15914 to 16514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,943 DEBUG Processing 103/730 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,067 DEBUG Processing 439/854 atomic regions from SNP 131526 to 132126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,104 DEBUG Processing 122/747 atomic regions from SNP 36401 to 37001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,152 DEBUG Processing 55/701 atomic regions from SNP 16214 to 16814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,209 DEBUG Processing 104/730 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,320 DEBUG Processing 440/854 atomic regions from SNP 131826 to 132426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,366 DEBUG Processing 123/747 atomic regions from SNP 36701 to 37301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,403 DEBUG Processing 56/701 atomic regions from SNP 16514 to 17114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,460 DEBUG Processing 105/730 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,579 DEBUG Processing 441/854 atomic regions from SNP 132126 to 132726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,614 DEBUG Processing 124/747 atomic regions from SNP 37001 to 37601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,668 DEBUG Processing 57/701 atomic regions from SNP 16814 to 17414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,713 DEBUG Processing 106/730 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,839 DEBUG Processing 442/854 atomic regions from SNP 132426 to 133026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,865 DEBUG Processing 125/747 atomic regions from SNP 37301 to 37901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,917 DEBUG Processing 58/701 atomic regions from SNP 17114 to 17714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,979 DEBUG Processing 107/730 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,109 DEBUG Processing 443/854 atomic regions from SNP 132726 to 133326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,120 DEBUG Processing 126/747 atomic regions from SNP 37601 to 38201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,169 DEBUG Processing 59/701 atomic regions from SNP 17414 to 18014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,253 DEBUG Processing 108/730 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,378 DEBUG Processing 444/854 atomic regions from SNP 133026 to 133626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,393 DEBUG Processing 127/747 atomic regions from SNP 37901 to 38501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,417 DEBUG Processing 60/701 atomic regions from SNP 17714 to 18314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,504 DEBUG Processing 109/730 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,644 DEBUG Processing 445/854 atomic regions from SNP 133326 to 133926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,650 DEBUG Processing 128/747 atomic regions from SNP 38201 to 38801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,675 DEBUG Processing 61/701 atomic regions from SNP 18014 to 18614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,746 DEBUG Processing 110/730 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,906 DEBUG Processing 129/747 atomic regions from SNP 38501 to 39101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,909 DEBUG Processing 446/854 atomic regions from SNP 133626 to 134226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,952 DEBUG Processing 62/701 atomic regions from SNP 18314 to 18914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,989 DEBUG Processing 111/730 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,158 DEBUG Processing 130/747 atomic regions from SNP 38801 to 39401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,172 DEBUG Processing 447/854 atomic regions from SNP 133926 to 134526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,228 DEBUG Processing 63/701 atomic regions from SNP 18614 to 19214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,236 DEBUG Processing 112/730 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,413 DEBUG Processing 131/747 atomic regions from SNP 39101 to 39701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,441 DEBUG Processing 448/854 atomic regions from SNP 134226 to 134826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,489 DEBUG Processing 113/730 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,502 DEBUG Processing 64/701 atomic regions from SNP 18914 to 19514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,666 DEBUG Processing 132/747 atomic regions from SNP 39401 to 40001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,712 DEBUG Processing 449/854 atomic regions from SNP 134526 to 135126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,747 DEBUG Processing 114/730 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,758 DEBUG Processing 65/701 atomic regions from SNP 19214 to 19814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,920 DEBUG Processing 133/747 atomic regions from SNP 39701 to 40301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,985 DEBUG Processing 450/854 atomic regions from SNP 134826 to 135426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,007 DEBUG Processing 115/730 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,015 DEBUG Processing 66/701 atomic regions from SNP 19514 to 20114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,164 DEBUG Processing 134/747 atomic regions from SNP 40001 to 40601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,255 DEBUG Processing 451/854 atomic regions from SNP 135126 to 135726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,267 DEBUG Processing 116/730 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,273 DEBUG Processing 67/701 atomic regions from SNP 19814 to 20414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,405 DEBUG Processing 135/747 atomic regions from SNP 40301 to 40901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,524 DEBUG Processing 452/854 atomic regions from SNP 135426 to 136026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,524 DEBUG Processing 117/730 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,531 DEBUG Processing 68/701 atomic regions from SNP 20114 to 20714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,644 DEBUG Processing 136/747 atomic regions from SNP 40601 to 41201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,783 DEBUG Processing 118/730 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,787 DEBUG Processing 69/701 atomic regions from SNP 20414 to 21014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,794 DEBUG Processing 453/854 atomic regions from SNP 135726 to 136326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,894 DEBUG Processing 137/747 atomic regions from SNP 40901 to 41501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,044 DEBUG Processing 119/730 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,048 DEBUG Processing 70/701 atomic regions from SNP 20714 to 21314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,071 DEBUG Processing 454/854 atomic regions from SNP 136026 to 136626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,142 DEBUG Processing 138/747 atomic regions from SNP 41201 to 41801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,295 DEBUG Processing 120/730 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,310 DEBUG Processing 71/701 atomic regions from SNP 21014 to 21614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,337 DEBUG Processing 455/854 atomic regions from SNP 136326 to 136926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,401 DEBUG Processing 139/747 atomic regions from SNP 41501 to 42101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,542 DEBUG Processing 121/730 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,558 DEBUG Processing 72/701 atomic regions from SNP 21314 to 21914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,600 DEBUG Processing 456/854 atomic regions from SNP 136626 to 137226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,647 DEBUG Processing 140/747 atomic regions from SNP 41801 to 42401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,790 DEBUG Processing 122/730 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,810 DEBUG Processing 73/701 atomic regions from SNP 21614 to 22214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,869 DEBUG Processing 457/854 atomic regions from SNP 136926 to 137526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,900 DEBUG Processing 141/747 atomic regions from SNP 42101 to 42701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,054 DEBUG Processing 74/701 atomic regions from SNP 21914 to 22514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,062 DEBUG Processing 123/730 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,139 DEBUG Processing 458/854 atomic regions from SNP 137226 to 137826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,154 DEBUG Processing 142/747 atomic regions from SNP 42401 to 43001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,299 DEBUG Processing 75/701 atomic regions from SNP 22214 to 22814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,338 DEBUG Processing 124/730 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,409 DEBUG Processing 459/854 atomic regions from SNP 137526 to 138126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,409 DEBUG Processing 143/747 atomic regions from SNP 42701 to 43301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,539 DEBUG Processing 76/701 atomic regions from SNP 22514 to 23114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,606 DEBUG Processing 125/730 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,662 DEBUG Processing 144/747 atomic regions from SNP 43001 to 43601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,692 DEBUG Processing 460/854 atomic regions from SNP 137826 to 138426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,780 DEBUG Processing 77/701 atomic regions from SNP 22814 to 23414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,874 DEBUG Processing 126/730 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,922 DEBUG Processing 145/747 atomic regions from SNP 43301 to 43901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,973 DEBUG Processing 461/854 atomic regions from SNP 138126 to 138726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,026 DEBUG Processing 78/701 atomic regions from SNP 23114 to 23714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,136 DEBUG Processing 127/730 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,180 DEBUG Processing 146/747 atomic regions from SNP 43601 to 44201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,269 DEBUG Processing 462/854 atomic regions from SNP 138426 to 139026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,297 DEBUG Processing 79/701 atomic regions from SNP 23414 to 24014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,383 DEBUG Processing 128/730 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,432 DEBUG Processing 147/747 atomic regions from SNP 43901 to 44501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,559 DEBUG Processing 80/701 atomic regions from SNP 23714 to 24314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,562 DEBUG Processing 463/854 atomic regions from SNP 138726 to 139326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,638 DEBUG Processing 129/730 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,681 DEBUG Processing 148/747 atomic regions from SNP 44201 to 44801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,803 DEBUG Processing 81/701 atomic regions from SNP 24014 to 24614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,852 DEBUG Processing 464/854 atomic regions from SNP 139026 to 139626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,890 DEBUG Processing 130/730 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,933 DEBUG Processing 149/747 atomic regions from SNP 44501 to 45101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,044 DEBUG Processing 82/701 atomic regions from SNP 24314 to 24914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,146 DEBUG Processing 465/854 atomic regions from SNP 139326 to 139926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,155 DEBUG Processing 131/730 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,186 DEBUG Processing 150/747 atomic regions from SNP 44801 to 45401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,286 DEBUG Processing 83/701 atomic regions from SNP 24614 to 25214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,433 DEBUG Processing 466/854 atomic regions from SNP 139626 to 140226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,444 DEBUG Processing 132/730 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,445 DEBUG Processing 151/747 atomic regions from SNP 45101 to 45701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,539 DEBUG Processing 84/701 atomic regions from SNP 24914 to 25514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,696 DEBUG Processing 152/747 atomic regions from SNP 45401 to 46001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,714 DEBUG Processing 467/854 atomic regions from SNP 139926 to 140526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,730 DEBUG Processing 133/730 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,788 DEBUG Processing 85/701 atomic regions from SNP 25214 to 25814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,946 DEBUG Processing 153/747 atomic regions from SNP 45701 to 46301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,982 DEBUG Processing 468/854 atomic regions from SNP 140226 to 140826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,997 DEBUG Processing 134/730 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,039 DEBUG Processing 86/701 atomic regions from SNP 25514 to 26114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,195 DEBUG Processing 154/747 atomic regions from SNP 46001 to 46601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,246 DEBUG Processing 469/854 atomic regions from SNP 140526 to 141126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,251 DEBUG Processing 135/730 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,289 DEBUG Processing 87/701 atomic regions from SNP 25814 to 26414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,454 DEBUG Processing 155/747 atomic regions from SNP 46301 to 46901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,506 DEBUG Processing 136/730 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,516 DEBUG Processing 470/854 atomic regions from SNP 140826 to 141426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,543 DEBUG Processing 88/701 atomic regions from SNP 26114 to 26714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,704 DEBUG Processing 156/747 atomic regions from SNP 46601 to 47201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,762 DEBUG Processing 137/730 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,783 DEBUG Processing 471/854 atomic regions from SNP 141126 to 141726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,794 DEBUG Processing 89/701 atomic regions from SNP 26414 to 27014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,978 DEBUG Processing 157/747 atomic regions from SNP 46901 to 47501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,056 DEBUG Processing 138/730 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,080 DEBUG Processing 90/701 atomic regions from SNP 26714 to 27314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,100 DEBUG Processing 472/854 atomic regions from SNP 141426 to 142026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,249 DEBUG Processing 158/747 atomic regions from SNP 47201 to 47801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,306 DEBUG Processing 139/730 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,325 DEBUG Processing 91/701 atomic regions from SNP 27014 to 27614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,358 DEBUG Processing 473/854 atomic regions from SNP 141726 to 142326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,498 DEBUG Processing 159/747 atomic regions from SNP 47501 to 48101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,552 DEBUG Processing 140/730 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,572 DEBUG Processing 92/701 atomic regions from SNP 27314 to 27914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,621 DEBUG Processing 474/854 atomic regions from SNP 142026 to 142626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,755 DEBUG Processing 160/747 atomic regions from SNP 47801 to 48401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,823 DEBUG Processing 141/730 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,828 DEBUG Processing 93/701 atomic regions from SNP 27614 to 28214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,886 DEBUG Processing 475/854 atomic regions from SNP 142326 to 142926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,013 DEBUG Processing 161/747 atomic regions from SNP 48101 to 48701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,081 DEBUG Processing 142/730 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,084 DEBUG Processing 94/701 atomic regions from SNP 27914 to 28514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,171 DEBUG Processing 476/854 atomic regions from SNP 142626 to 143226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,274 DEBUG Processing 162/747 atomic regions from SNP 48401 to 49001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,332 DEBUG Processing 143/730 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,337 DEBUG Processing 95/701 atomic regions from SNP 28214 to 28814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,463 DEBUG Processing 477/854 atomic regions from SNP 142926 to 143526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,531 DEBUG Processing 163/747 atomic regions from SNP 48701 to 49301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,587 DEBUG Processing 144/730 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,596 DEBUG Processing 96/701 atomic regions from SNP 28514 to 29114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,729 DEBUG Processing 478/854 atomic regions from SNP 143226 to 143826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,788 DEBUG Processing 164/747 atomic regions from SNP 49001 to 49601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,841 DEBUG Processing 145/730 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,857 DEBUG Processing 97/701 atomic regions from SNP 28814 to 29414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,018 DEBUG Processing 479/854 atomic regions from SNP 143526 to 144126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,050 DEBUG Processing 165/747 atomic regions from SNP 49301 to 49901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,103 DEBUG Processing 146/730 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,123 DEBUG Processing 98/701 atomic regions from SNP 29114 to 29714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,309 DEBUG Processing 166/747 atomic regions from SNP 49601 to 50201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,318 DEBUG Processing 480/854 atomic regions from SNP 143826 to 144426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,358 DEBUG Processing 147/730 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,373 DEBUG Processing 99/701 atomic regions from SNP 29414 to 30014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,564 DEBUG Processing 167/747 atomic regions from SNP 49901 to 50501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,607 DEBUG Processing 481/854 atomic regions from SNP 144126 to 144726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,612 DEBUG Processing 148/730 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,627 DEBUG Processing 100/701 atomic regions from SNP 29714 to 30314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,827 DEBUG Processing 168/747 atomic regions from SNP 50201 to 50801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,870 DEBUG Processing 149/730 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,884 DEBUG Processing 101/701 atomic regions from SNP 30014 to 30614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,907 DEBUG Processing 482/854 atomic regions from SNP 144426 to 145026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,084 DEBUG Processing 169/747 atomic regions from SNP 50501 to 51101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,127 DEBUG Processing 150/730 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,137 DEBUG Processing 102/701 atomic regions from SNP 30314 to 30914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,210 DEBUG Processing 483/854 atomic regions from SNP 144726 to 145326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,345 DEBUG Processing 170/747 atomic regions from SNP 50801 to 51401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,387 DEBUG Processing 103/701 atomic regions from SNP 30614 to 31214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,390 DEBUG Processing 151/730 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,515 DEBUG Processing 484/854 atomic regions from SNP 145026 to 145626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,596 DEBUG Processing 171/747 atomic regions from SNP 51101 to 51701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,636 DEBUG Processing 104/701 atomic regions from SNP 30914 to 31514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,640 DEBUG Processing 152/730 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,806 DEBUG Processing 485/854 atomic regions from SNP 145326 to 145926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,849 DEBUG Processing 172/747 atomic regions from SNP 51401 to 52001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,888 DEBUG Processing 105/701 atomic regions from SNP 31214 to 31814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,894 DEBUG Processing 153/730 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,095 DEBUG Processing 486/854 atomic regions from SNP 145626 to 146226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,108 DEBUG Processing 173/747 atomic regions from SNP 51701 to 52301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,143 DEBUG Processing 106/701 atomic regions from SNP 31514 to 32114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,149 DEBUG Processing 154/730 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,368 DEBUG Processing 174/747 atomic regions from SNP 52001 to 52601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,390 DEBUG Processing 487/854 atomic regions from SNP 145926 to 146526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,402 DEBUG Processing 107/701 atomic regions from SNP 31814 to 32414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,412 DEBUG Processing 155/730 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,627 DEBUG Processing 175/747 atomic regions from SNP 52301 to 52901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,675 DEBUG Processing 156/730 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,679 DEBUG Processing 488/854 atomic regions from SNP 146226 to 146826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,679 DEBUG Processing 108/701 atomic regions from SNP 32114 to 32714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,879 DEBUG Processing 176/747 atomic regions from SNP 52601 to 53201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,936 DEBUG Processing 157/730 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,968 DEBUG Processing 489/854 atomic regions from SNP 146526 to 147126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,974 DEBUG Processing 109/701 atomic regions from SNP 32414 to 33014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,127 DEBUG Processing 177/747 atomic regions from SNP 52901 to 53501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,195 DEBUG Processing 158/730 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,271 DEBUG Processing 110/701 atomic regions from SNP 32714 to 33314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,275 DEBUG Processing 490/854 atomic regions from SNP 146826 to 147426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,372 DEBUG Processing 178/747 atomic regions from SNP 53201 to 53801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,445 DEBUG Processing 159/730 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,555 DEBUG Processing 111/701 atomic regions from SNP 33014 to 33614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,573 DEBUG Processing 491/854 atomic regions from SNP 147126 to 147726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,623 DEBUG Processing 179/747 atomic regions from SNP 53501 to 54101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,691 DEBUG Processing 160/730 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,844 DEBUG Processing 112/701 atomic regions from SNP 33314 to 33914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,872 DEBUG Processing 492/854 atomic regions from SNP 147426 to 148026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,882 DEBUG Processing 180/747 atomic regions from SNP 53801 to 54401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,940 DEBUG Processing 161/730 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,132 DEBUG Processing 113/701 atomic regions from SNP 33614 to 34214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,137 DEBUG Processing 181/747 atomic regions from SNP 54101 to 54701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,168 DEBUG Processing 493/854 atomic regions from SNP 147726 to 148326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,194 DEBUG Processing 162/730 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,392 DEBUG Processing 182/747 atomic regions from SNP 54401 to 55001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,418 DEBUG Processing 114/701 atomic regions from SNP 33914 to 34514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,452 DEBUG Processing 163/730 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,468 DEBUG Processing 494/854 atomic regions from SNP 148026 to 148626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,642 DEBUG Processing 183/747 atomic regions from SNP 54701 to 55301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,709 DEBUG Processing 115/701 atomic regions from SNP 34214 to 34814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,709 DEBUG Processing 164/730 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,757 DEBUG Processing 495/854 atomic regions from SNP 148326 to 148926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,889 DEBUG Processing 184/747 atomic regions from SNP 55001 to 55601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,968 DEBUG Processing 165/730 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,004 DEBUG Processing 116/701 atomic regions from SNP 34514 to 35114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,051 DEBUG Processing 496/854 atomic regions from SNP 148626 to 149226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,157 DEBUG Processing 185/747 atomic regions from SNP 55301 to 55901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,223 DEBUG Processing 166/730 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,294 DEBUG Processing 117/701 atomic regions from SNP 34814 to 35414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,344 DEBUG Processing 497/854 atomic regions from SNP 148926 to 149526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,403 DEBUG Processing 186/747 atomic regions from SNP 55601 to 56201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,475 DEBUG Processing 167/730 atomic regions from SNP 49966 to 50566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,578 DEBUG Processing 118/701 atomic regions from SNP 35114 to 35714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,646 DEBUG Processing 498/854 atomic regions from SNP 149226 to 149826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,651 DEBUG Processing 187/747 atomic regions from SNP 55901 to 56501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,722 DEBUG Processing 168/730 atomic regions from SNP 50266 to 50866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,851 DEBUG Processing 119/701 atomic regions from SNP 35414 to 36014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,898 DEBUG Processing 188/747 atomic regions from SNP 56201 to 56801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,936 DEBUG Processing 499/854 atomic regions from SNP 149526 to 150126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,984 DEBUG Processing 169/730 atomic regions from SNP 50566 to 51166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,113 DEBUG Processing 120/701 atomic regions from SNP 35714 to 36314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,146 DEBUG Processing 189/747 atomic regions from SNP 56501 to 57101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,209 DEBUG Processing 500/854 atomic regions from SNP 149826 to 150426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,264 DEBUG Processing 170/730 atomic regions from SNP 50866 to 51466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,365 DEBUG Processing 121/701 atomic regions from SNP 36014 to 36614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,391 DEBUG Processing 190/747 atomic regions from SNP 56801 to 57401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,507 DEBUG Processing 501/854 atomic regions from SNP 150126 to 150726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,539 DEBUG Processing 171/730 atomic regions from SNP 51166 to 51766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,606 DEBUG Processing 122/701 atomic regions from SNP 36314 to 36914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,626 DEBUG Processing 191/747 atomic regions from SNP 57101 to 57701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,777 DEBUG Processing 502/854 atomic regions from SNP 150426 to 151026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,814 DEBUG Processing 172/730 atomic regions from SNP 51466 to 52066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,867 DEBUG Processing 192/747 atomic regions from SNP 57401 to 58001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,874 DEBUG Processing 123/701 atomic regions from SNP 36614 to 37214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,080 DEBUG Processing 173/730 atomic regions from SNP 51766 to 52366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,083 DEBUG Processing 503/854 atomic regions from SNP 150726 to 151326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,113 DEBUG Processing 193/747 atomic regions from SNP 57701 to 58301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,146 DEBUG Processing 124/701 atomic regions from SNP 36914 to 37514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,346 DEBUG Processing 174/730 atomic regions from SNP 52066 to 52666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,360 DEBUG Processing 504/854 atomic regions from SNP 151026 to 151626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,373 DEBUG Processing 194/747 atomic regions from SNP 58001 to 58601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,436 DEBUG Processing 125/701 atomic regions from SNP 37214 to 37814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,610 DEBUG Processing 175/730 atomic regions from SNP 52366 to 52966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,636 DEBUG Processing 505/854 atomic regions from SNP 151326 to 151926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,637 DEBUG Processing 195/747 atomic regions from SNP 58301 to 58901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,711 DEBUG Processing 126/701 atomic regions from SNP 37514 to 38114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,867 DEBUG Processing 176/730 atomic regions from SNP 52666 to 53266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,896 DEBUG Processing 196/747 atomic regions from SNP 58601 to 59201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,908 DEBUG Processing 506/854 atomic regions from SNP 151626 to 152226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,959 DEBUG Processing 127/701 atomic regions from SNP 37814 to 38414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,128 DEBUG Processing 177/730 atomic regions from SNP 52966 to 53566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,154 DEBUG Processing 197/747 atomic regions from SNP 58901 to 59501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,196 DEBUG Processing 507/854 atomic regions from SNP 151926 to 152526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,209 DEBUG Processing 128/701 atomic regions from SNP 38114 to 38714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,374 DEBUG Processing 178/730 atomic regions from SNP 53266 to 53866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,408 DEBUG Processing 198/747 atomic regions from SNP 59201 to 59801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,458 DEBUG Processing 129/701 atomic regions from SNP 38414 to 39014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,488 DEBUG Processing 508/854 atomic regions from SNP 152226 to 152826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,613 DEBUG Processing 179/730 atomic regions from SNP 53566 to 54166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,658 DEBUG Processing 199/747 atomic regions from SNP 59501 to 60101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,711 DEBUG Processing 130/701 atomic regions from SNP 38714 to 39314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,777 DEBUG Processing 509/854 atomic regions from SNP 152526 to 153126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,854 DEBUG Processing 180/730 atomic regions from SNP 53866 to 54466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,908 DEBUG Processing 200/747 atomic regions from SNP 59801 to 60401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,961 DEBUG Processing 131/701 atomic regions from SNP 39014 to 39614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,056 DEBUG Processing 510/854 atomic regions from SNP 152826 to 153426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,094 DEBUG Processing 181/730 atomic regions from SNP 54166 to 54766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,155 DEBUG Processing 201/747 atomic regions from SNP 60101 to 60701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,207 DEBUG Processing 132/701 atomic regions from SNP 39314 to 39914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,334 DEBUG Processing 182/730 atomic regions from SNP 54466 to 55066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,347 DEBUG Processing 511/854 atomic regions from SNP 153126 to 153726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,403 DEBUG Processing 202/747 atomic regions from SNP 60401 to 61001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,451 DEBUG Processing 133/701 atomic regions from SNP 39614 to 40214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,574 DEBUG Processing 183/730 atomic regions from SNP 54766 to 55366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,639 DEBUG Processing 512/854 atomic regions from SNP 153426 to 154026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,650 DEBUG Processing 203/747 atomic regions from SNP 60701 to 61301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,698 DEBUG Processing 134/701 atomic regions from SNP 39914 to 40514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,817 DEBUG Processing 184/730 atomic regions from SNP 55066 to 55666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,903 DEBUG Processing 204/747 atomic regions from SNP 61001 to 61601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,931 DEBUG Processing 513/854 atomic regions from SNP 153726 to 154326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,947 DEBUG Processing 135/701 atomic regions from SNP 40214 to 40814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,056 DEBUG Processing 185/730 atomic regions from SNP 55366 to 55966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,154 DEBUG Processing 205/747 atomic regions from SNP 61301 to 61901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,213 DEBUG Processing 514/854 atomic regions from SNP 154026 to 154626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,218 DEBUG Processing 136/701 atomic regions from SNP 40514 to 41114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,309 DEBUG Processing 186/730 atomic regions from SNP 55666 to 56266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,399 DEBUG Processing 206/747 atomic regions from SNP 61601 to 62201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,483 DEBUG Processing 137/701 atomic regions from SNP 40814 to 41414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,498 DEBUG Processing 515/854 atomic regions from SNP 154326 to 154926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,549 DEBUG Processing 187/730 atomic regions from SNP 55966 to 56566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,646 DEBUG Processing 207/747 atomic regions from SNP 61901 to 62501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,763 DEBUG Processing 138/701 atomic regions from SNP 41114 to 41714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,778 DEBUG Processing 516/854 atomic regions from SNP 154626 to 155226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,796 DEBUG Processing 188/730 atomic regions from SNP 56266 to 56866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,895 DEBUG Processing 208/747 atomic regions from SNP 62201 to 62801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,015 DEBUG Processing 139/701 atomic regions from SNP 41414 to 42014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,044 DEBUG Processing 189/730 atomic regions from SNP 56566 to 57166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,060 DEBUG Processing 517/854 atomic regions from SNP 154926 to 155526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,140 DEBUG Processing 209/747 atomic regions from SNP 62501 to 63101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,265 DEBUG Processing 140/701 atomic regions from SNP 41714 to 42314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,292 DEBUG Processing 190/730 atomic regions from SNP 56866 to 57466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,339 DEBUG Processing 518/854 atomic regions from SNP 155226 to 155826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,392 DEBUG Processing 210/747 atomic regions from SNP 62801 to 63401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,522 DEBUG Processing 141/701 atomic regions from SNP 42014 to 42614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,540 DEBUG Processing 191/730 atomic regions from SNP 57166 to 57766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,604 DEBUG Processing 519/854 atomic regions from SNP 155526 to 156126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,650 DEBUG Processing 211/747 atomic regions from SNP 63101 to 63701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,775 DEBUG Processing 142/701 atomic regions from SNP 42314 to 42914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,796 DEBUG Processing 192/730 atomic regions from SNP 57466 to 58066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,861 DEBUG Processing 520/854 atomic regions from SNP 155826 to 156426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,899 DEBUG Processing 212/747 atomic regions from SNP 63401 to 64001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,020 DEBUG Processing 143/701 atomic regions from SNP 42614 to 43214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,039 DEBUG Processing 193/730 atomic regions from SNP 57766 to 58366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,114 DEBUG Processing 521/854 atomic regions from SNP 156126 to 156726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,142 DEBUG Processing 213/747 atomic regions from SNP 63701 to 64301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,267 DEBUG Processing 144/701 atomic regions from SNP 42914 to 43514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,285 DEBUG Processing 194/730 atomic regions from SNP 58066 to 58666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,368 DEBUG Processing 522/854 atomic regions from SNP 156426 to 157026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,385 DEBUG Processing 214/747 atomic regions from SNP 64001 to 64601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,526 DEBUG Processing 145/701 atomic regions from SNP 43214 to 43814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,535 DEBUG Processing 195/730 atomic regions from SNP 58366 to 58966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,624 DEBUG Processing 523/854 atomic regions from SNP 156726 to 157326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,630 DEBUG Processing 215/747 atomic regions from SNP 64301 to 64901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,787 DEBUG Processing 196/730 atomic regions from SNP 58666 to 59266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,788 DEBUG Processing 146/701 atomic regions from SNP 43514 to 44114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,883 DEBUG Processing 524/854 atomic regions from SNP 157026 to 157626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,902 DEBUG Processing 216/747 atomic regions from SNP 64601 to 65201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,055 DEBUG Processing 197/730 atomic regions from SNP 58966 to 59566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,056 DEBUG Processing 147/701 atomic regions from SNP 43814 to 44414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,150 DEBUG Processing 525/854 atomic regions from SNP 157326 to 157926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,196 DEBUG Processing 217/747 atomic regions from SNP 64901 to 65501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,314 DEBUG Processing 198/730 atomic regions from SNP 59266 to 59866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,318 DEBUG Processing 148/701 atomic regions from SNP 44114 to 44714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,414 DEBUG Processing 526/854 atomic regions from SNP 157626 to 158226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,476 DEBUG Processing 218/747 atomic regions from SNP 65201 to 65801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,589 DEBUG Processing 199/730 atomic regions from SNP 59566 to 60166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,592 DEBUG Processing 149/701 atomic regions from SNP 44414 to 45014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,677 DEBUG Processing 527/854 atomic regions from SNP 157926 to 158526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,715 DEBUG Processing 219/747 atomic regions from SNP 65501 to 66101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,838 DEBUG Processing 200/730 atomic regions from SNP 59866 to 60466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,843 DEBUG Processing 150/701 atomic regions from SNP 44714 to 45314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,933 DEBUG Processing 528/854 atomic regions from SNP 158226 to 158826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,955 DEBUG Processing 220/747 atomic regions from SNP 65801 to 66401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,084 DEBUG Processing 201/730 atomic regions from SNP 60166 to 60766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,091 DEBUG Processing 151/701 atomic regions from SNP 45014 to 45614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,196 DEBUG Processing 529/854 atomic regions from SNP 158526 to 159126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,201 DEBUG Processing 221/747 atomic regions from SNP 66101 to 66701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,335 DEBUG Processing 202/730 atomic regions from SNP 60466 to 61066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,343 DEBUG Processing 152/701 atomic regions from SNP 45314 to 45914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,455 DEBUG Processing 222/747 atomic regions from SNP 66401 to 67001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,459 DEBUG Processing 530/854 atomic regions from SNP 158826 to 159426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,584 DEBUG Processing 203/730 atomic regions from SNP 60766 to 61366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,593 DEBUG Processing 153/701 atomic regions from SNP 45614 to 46214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,715 DEBUG Processing 223/747 atomic regions from SNP 66701 to 67301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,726 DEBUG Processing 531/854 atomic regions from SNP 159126 to 159726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,844 DEBUG Processing 204/730 atomic regions from SNP 61066 to 61666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,849 DEBUG Processing 154/701 atomic regions from SNP 45914 to 46514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,983 DEBUG Processing 224/747 atomic regions from SNP 67001 to 67601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,990 DEBUG Processing 532/854 atomic regions from SNP 159426 to 160026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,106 DEBUG Processing 205/730 atomic regions from SNP 61366 to 61966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,113 DEBUG Processing 155/701 atomic regions from SNP 46214 to 46814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,265 DEBUG Processing 225/747 atomic regions from SNP 67301 to 67901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,266 DEBUG Processing 533/854 atomic regions from SNP 159726 to 160326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,366 DEBUG Processing 206/730 atomic regions from SNP 61666 to 62266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,374 DEBUG Processing 156/701 atomic regions from SNP 46514 to 47114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,523 DEBUG Processing 226/747 atomic regions from SNP 67601 to 68201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,558 DEBUG Processing 534/854 atomic regions from SNP 160026 to 160626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,620 DEBUG Processing 207/730 atomic regions from SNP 61966 to 62566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,639 DEBUG Processing 157/701 atomic regions from SNP 46814 to 47414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,784 DEBUG Processing 227/747 atomic regions from SNP 67901 to 68501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,839 DEBUG Processing 535/854 atomic regions from SNP 160326 to 160926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,878 DEBUG Processing 208/730 atomic regions from SNP 62266 to 62866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,898 DEBUG Processing 158/701 atomic regions from SNP 47114 to 47714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,049 DEBUG Processing 228/747 atomic regions from SNP 68201 to 68801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,127 DEBUG Processing 536/854 atomic regions from SNP 160626 to 161226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,134 DEBUG Processing 209/730 atomic regions from SNP 62566 to 63166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,165 DEBUG Processing 159/701 atomic regions from SNP 47414 to 48014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,328 DEBUG Processing 229/747 atomic regions from SNP 68501 to 69101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,389 DEBUG Processing 210/730 atomic regions from SNP 62866 to 63466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,399 DEBUG Processing 537/854 atomic regions from SNP 160926 to 161526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,427 DEBUG Processing 160/701 atomic regions from SNP 47714 to 48314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,612 DEBUG Processing 230/747 atomic regions from SNP 68801 to 69401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,645 DEBUG Processing 211/730 atomic regions from SNP 63166 to 63766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,671 DEBUG Processing 538/854 atomic regions from SNP 161226 to 161826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,691 DEBUG Processing 161/701 atomic regions from SNP 48014 to 48614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,888 DEBUG Processing 231/747 atomic regions from SNP 69101 to 69701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,889 DEBUG Processing 212/730 atomic regions from SNP 63466 to 64066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,947 DEBUG Processing 539/854 atomic regions from SNP 161526 to 162126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,950 DEBUG Processing 162/701 atomic regions from SNP 48314 to 48914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,126 DEBUG Processing 213/730 atomic regions from SNP 63766 to 64366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,163 DEBUG Processing 232/747 atomic regions from SNP 69401 to 70001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,202 DEBUG Processing 163/701 atomic regions from SNP 48614 to 49214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,205 DEBUG Processing 540/854 atomic regions from SNP 161826 to 162426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,361 DEBUG Processing 214/730 atomic regions from SNP 64066 to 64666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,410 DEBUG Processing 233/747 atomic regions from SNP 69701 to 70301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,450 DEBUG Processing 164/701 atomic regions from SNP 48914 to 49514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,461 DEBUG Processing 541/854 atomic regions from SNP 162126 to 162726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,606 DEBUG Processing 215/730 atomic regions from SNP 64366 to 64966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,670 DEBUG Processing 234/747 atomic regions from SNP 70001 to 70601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,695 DEBUG Processing 165/701 atomic regions from SNP 49214 to 49814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,716 DEBUG Processing 542/854 atomic regions from SNP 162426 to 163026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,853 DEBUG Processing 216/730 atomic regions from SNP 64666 to 65266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,916 DEBUG Processing 235/747 atomic regions from SNP 70301 to 70901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,940 DEBUG Processing 166/701 atomic regions from SNP 49514 to 50114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,967 DEBUG Processing 543/854 atomic regions from SNP 162726 to 163326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,098 DEBUG Processing 217/730 atomic regions from SNP 64966 to 65566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,155 DEBUG Processing 236/747 atomic regions from SNP 70601 to 71201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,179 DEBUG Processing 167/701 atomic regions from SNP 49814 to 50414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,216 DEBUG Processing 544/854 atomic regions from SNP 163026 to 163626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,350 DEBUG Processing 218/730 atomic regions from SNP 65266 to 65866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,423 DEBUG Processing 168/701 atomic regions from SNP 50114 to 50714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,427 DEBUG Processing 237/747 atomic regions from SNP 70901 to 71501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,467 DEBUG Processing 545/854 atomic regions from SNP 163326 to 163926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,605 DEBUG Processing 219/730 atomic regions from SNP 65566 to 66166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,670 DEBUG Processing 169/701 atomic regions from SNP 50414 to 51014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,709 DEBUG Processing 238/747 atomic regions from SNP 71201 to 71801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,720 DEBUG Processing 546/854 atomic regions from SNP 163626 to 164226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,854 DEBUG Processing 220/730 atomic regions from SNP 65866 to 66466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,915 DEBUG Processing 170/701 atomic regions from SNP 50714 to 51314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,971 DEBUG Processing 239/747 atomic regions from SNP 71501 to 72101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,981 DEBUG Processing 547/854 atomic regions from SNP 163926 to 164526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,104 DEBUG Processing 221/730 atomic regions from SNP 66166 to 66766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,168 DEBUG Processing 171/701 atomic regions from SNP 51014 to 51614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,228 DEBUG Processing 240/747 atomic regions from SNP 71801 to 72401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,247 DEBUG Processing 548/854 atomic regions from SNP 164226 to 164826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,352 DEBUG Processing 222/730 atomic regions from SNP 66466 to 67066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,418 DEBUG Processing 172/701 atomic regions from SNP 51314 to 51914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,480 DEBUG Processing 241/747 atomic regions from SNP 72101 to 72701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,534 DEBUG Processing 549/854 atomic regions from SNP 164526 to 165126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,606 DEBUG Processing 223/730 atomic regions from SNP 66766 to 67366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,672 DEBUG Processing 173/701 atomic regions from SNP 51614 to 52214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,728 DEBUG Processing 242/747 atomic regions from SNP 72401 to 73001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,795 DEBUG Processing 550/854 atomic regions from SNP 164826 to 165426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,851 DEBUG Processing 224/730 atomic regions from SNP 67066 to 67666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,919 DEBUG Processing 174/701 atomic regions from SNP 51914 to 52514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,972 DEBUG Processing 243/747 atomic regions from SNP 72701 to 73301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,047 DEBUG Processing 551/854 atomic regions from SNP 165126 to 165726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,093 DEBUG Processing 225/730 atomic regions from SNP 67366 to 67966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,179 DEBUG Processing 175/701 atomic regions from SNP 52214 to 52814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,213 DEBUG Processing 244/747 atomic regions from SNP 73001 to 73601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,302 DEBUG Processing 552/854 atomic regions from SNP 165426 to 166026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,335 DEBUG Processing 226/730 atomic regions from SNP 67666 to 68266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,440 DEBUG Processing 176/701 atomic regions from SNP 52514 to 53114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,459 DEBUG Processing 245/747 atomic regions from SNP 73301 to 73901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,562 DEBUG Processing 553/854 atomic regions from SNP 165726 to 166326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,576 DEBUG Processing 227/730 atomic regions from SNP 67966 to 68566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,678 DEBUG Processing 177/701 atomic regions from SNP 52814 to 53414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,699 DEBUG Processing 246/747 atomic regions from SNP 73601 to 74201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,814 DEBUG Processing 554/854 atomic regions from SNP 166026 to 166626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,817 DEBUG Processing 228/730 atomic regions from SNP 68266 to 68866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,917 DEBUG Processing 178/701 atomic regions from SNP 53114 to 53714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,949 DEBUG Processing 247/747 atomic regions from SNP 73901 to 74501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,061 DEBUG Processing 229/730 atomic regions from SNP 68566 to 69166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,069 DEBUG Processing 555/854 atomic regions from SNP 166326 to 166926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,158 DEBUG Processing 179/701 atomic regions from SNP 53414 to 54014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,191 DEBUG Processing 248/747 atomic regions from SNP 74201 to 74801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,307 DEBUG Processing 230/730 atomic regions from SNP 68866 to 69466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,329 DEBUG Processing 556/854 atomic regions from SNP 166626 to 167226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,412 DEBUG Processing 180/701 atomic regions from SNP 53714 to 54314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,438 DEBUG Processing 249/747 atomic regions from SNP 74501 to 75101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,558 DEBUG Processing 231/730 atomic regions from SNP 69166 to 69766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,592 DEBUG Processing 557/854 atomic regions from SNP 166926 to 167526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,652 DEBUG Processing 181/701 atomic regions from SNP 54014 to 54614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,677 DEBUG Processing 250/747 atomic regions from SNP 74801 to 75401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,804 DEBUG Processing 232/730 atomic regions from SNP 69466 to 70066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,858 DEBUG Processing 558/854 atomic regions from SNP 167226 to 167826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,899 DEBUG Processing 182/701 atomic regions from SNP 54314 to 54914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,922 DEBUG Processing 251/747 atomic regions from SNP 75101 to 75701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,053 DEBUG Processing 233/730 atomic regions from SNP 69766 to 70366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,117 DEBUG Processing 559/854 atomic regions from SNP 167526 to 168126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,145 DEBUG Processing 183/701 atomic regions from SNP 54614 to 55214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,166 DEBUG Processing 252/747 atomic regions from SNP 75401 to 76001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,297 DEBUG Processing 234/730 atomic regions from SNP 70066 to 70666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,375 DEBUG Processing 560/854 atomic regions from SNP 167826 to 168426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,387 DEBUG Processing 184/701 atomic regions from SNP 54914 to 55514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,409 DEBUG Processing 253/747 atomic regions from SNP 75701 to 76301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,536 DEBUG Processing 235/730 atomic regions from SNP 70366 to 70966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,631 DEBUG Processing 185/701 atomic regions from SNP 55214 to 55814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,631 DEBUG Processing 561/854 atomic regions from SNP 168126 to 168726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,652 DEBUG Processing 254/747 atomic regions from SNP 76001 to 76601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,778 DEBUG Processing 236/730 atomic regions from SNP 70666 to 71266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,876 DEBUG Processing 186/701 atomic regions from SNP 55514 to 56114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,889 DEBUG Processing 562/854 atomic regions from SNP 168426 to 169026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,896 DEBUG Processing 255/747 atomic regions from SNP 76301 to 76901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,011 DEBUG Processing 237/730 atomic regions from SNP 70966 to 71566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,115 DEBUG Processing 187/701 atomic regions from SNP 55814 to 56414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,138 DEBUG Processing 256/747 atomic regions from SNP 76601 to 77201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,142 DEBUG Processing 563/854 atomic regions from SNP 168726 to 169326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,247 DEBUG Processing 238/730 atomic regions from SNP 71266 to 71866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,369 DEBUG Processing 188/701 atomic regions from SNP 56114 to 56714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,389 DEBUG Processing 257/747 atomic regions from SNP 76901 to 77501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,402 DEBUG Processing 564/854 atomic regions from SNP 169026 to 169626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,487 DEBUG Processing 239/730 atomic regions from SNP 71566 to 72166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,620 DEBUG Processing 189/701 atomic regions from SNP 56414 to 57014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,638 DEBUG Processing 258/747 atomic regions from SNP 77201 to 77801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,664 DEBUG Processing 565/854 atomic regions from SNP 169326 to 169926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,736 DEBUG Processing 240/730 atomic regions from SNP 71866 to 72466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,874 DEBUG Processing 190/701 atomic regions from SNP 56714 to 57314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,885 DEBUG Processing 259/747 atomic regions from SNP 77501 to 78101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,921 DEBUG Processing 566/854 atomic regions from SNP 169626 to 170226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,982 DEBUG Processing 241/730 atomic regions from SNP 72166 to 72766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,118 DEBUG Processing 191/701 atomic regions from SNP 57014 to 57614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,132 DEBUG Processing 260/747 atomic regions from SNP 77801 to 78401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,178 DEBUG Processing 567/854 atomic regions from SNP 169926 to 170526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,245 DEBUG Processing 242/730 atomic regions from SNP 72466 to 73066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,364 DEBUG Processing 192/701 atomic regions from SNP 57314 to 57914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,377 DEBUG Processing 261/747 atomic regions from SNP 78101 to 78701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,437 DEBUG Processing 568/854 atomic regions from SNP 170226 to 170826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,486 DEBUG Processing 243/730 atomic regions from SNP 72766 to 73366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,601 DEBUG Processing 193/701 atomic regions from SNP 57614 to 58214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,619 DEBUG Processing 262/747 atomic regions from SNP 78401 to 79001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,693 DEBUG Processing 569/854 atomic regions from SNP 170526 to 171126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,746 DEBUG Processing 244/730 atomic regions from SNP 73066 to 73666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,842 DEBUG Processing 194/701 atomic regions from SNP 57914 to 58514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,859 DEBUG Processing 263/747 atomic regions from SNP 78701 to 79301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,944 DEBUG Processing 570/854 atomic regions from SNP 170826 to 171426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,999 DEBUG Processing 245/730 atomic regions from SNP 73366 to 73966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,079 DEBUG Processing 195/701 atomic regions from SNP 58214 to 58814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,096 DEBUG Processing 264/747 atomic regions from SNP 79001 to 79601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,191 DEBUG Processing 571/854 atomic regions from SNP 171126 to 171726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,238 DEBUG Processing 246/730 atomic regions from SNP 73666 to 74266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,313 DEBUG Processing 196/701 atomic regions from SNP 58514 to 59114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,331 DEBUG Processing 265/747 atomic regions from SNP 79301 to 79901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,435 DEBUG Processing 572/854 atomic regions from SNP 171426 to 172026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,466 DEBUG Processing 247/730 atomic regions from SNP 73966 to 74566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,556 DEBUG Processing 197/701 atomic regions from SNP 58814 to 59414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,584 DEBUG Processing 266/747 atomic regions from SNP 79601 to 80201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,689 DEBUG Processing 573/854 atomic regions from SNP 171726 to 172326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,702 DEBUG Processing 248/730 atomic regions from SNP 74266 to 74866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,801 DEBUG Processing 198/701 atomic regions from SNP 59114 to 59714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,826 DEBUG Processing 267/747 atomic regions from SNP 79901 to 80501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,937 DEBUG Processing 249/730 atomic regions from SNP 74566 to 75166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,938 DEBUG Processing 574/854 atomic regions from SNP 172026 to 172626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,052 DEBUG Processing 199/701 atomic regions from SNP 59414 to 60014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,075 DEBUG Processing 268/747 atomic regions from SNP 80201 to 80801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,196 DEBUG Processing 250/730 atomic regions from SNP 74866 to 75466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,199 DEBUG Processing 575/854 atomic regions from SNP 172326 to 172926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,307 DEBUG Processing 200/701 atomic regions from SNP 59714 to 60314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,319 DEBUG Processing 269/747 atomic regions from SNP 80501 to 81101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,448 DEBUG Processing 576/854 atomic regions from SNP 172626 to 173226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,462 DEBUG Processing 251/730 atomic regions from SNP 75166 to 75766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,553 DEBUG Processing 201/701 atomic regions from SNP 60014 to 60614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,560 DEBUG Processing 270/747 atomic regions from SNP 80801 to 81401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,689 DEBUG Processing 577/854 atomic regions from SNP 172926 to 173526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,691 DEBUG Processing 252/730 atomic regions from SNP 75466 to 76066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,796 DEBUG Processing 202/701 atomic regions from SNP 60314 to 60914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,797 DEBUG Processing 271/747 atomic regions from SNP 81101 to 81701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,935 DEBUG Processing 253/730 atomic regions from SNP 75766 to 76366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,941 DEBUG Processing 578/854 atomic regions from SNP 173226 to 173826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,044 DEBUG Processing 203/701 atomic regions from SNP 60614 to 61214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,046 DEBUG Processing 272/747 atomic regions from SNP 81401 to 82001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,169 DEBUG Processing 254/730 atomic regions from SNP 76066 to 76666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,186 DEBUG Processing 579/854 atomic regions from SNP 173526 to 174126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,287 DEBUG Processing 204/701 atomic regions from SNP 60914 to 61514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,288 DEBUG Processing 273/747 atomic regions from SNP 81701 to 82301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,402 DEBUG Processing 255/730 atomic regions from SNP 76366 to 76966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,426 DEBUG Processing 580/854 atomic regions from SNP 173826 to 174426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,537 DEBUG Processing 205/701 atomic regions from SNP 61214 to 61814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,545 DEBUG Processing 274/747 atomic regions from SNP 82001 to 82601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,637 DEBUG Processing 256/730 atomic regions from SNP 76666 to 77266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,671 DEBUG Processing 581/854 atomic regions from SNP 174126 to 174726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,779 DEBUG Processing 206/701 atomic regions from SNP 61514 to 62114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,789 DEBUG Processing 275/747 atomic regions from SNP 82301 to 82901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,874 DEBUG Processing 257/730 atomic regions from SNP 76966 to 77566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,917 DEBUG Processing 582/854 atomic regions from SNP 174426 to 175026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,026 DEBUG Processing 207/701 atomic regions from SNP 61814 to 62414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,034 DEBUG Processing 276/747 atomic regions from SNP 82601 to 83201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,113 DEBUG Processing 258/730 atomic regions from SNP 77266 to 77866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,165 DEBUG Processing 583/854 atomic regions from SNP 174726 to 175326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,272 DEBUG Processing 208/701 atomic regions from SNP 62114 to 62714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,280 DEBUG Processing 277/747 atomic regions from SNP 82901 to 83501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,358 DEBUG Processing 259/730 atomic regions from SNP 77566 to 78166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,418 DEBUG Processing 584/854 atomic regions from SNP 175026 to 175626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,515 DEBUG Processing 209/701 atomic regions from SNP 62414 to 63014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,528 DEBUG Processing 278/747 atomic regions from SNP 83201 to 83801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,606 DEBUG Processing 260/730 atomic regions from SNP 77866 to 78466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,673 DEBUG Processing 585/854 atomic regions from SNP 175326 to 175926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,760 DEBUG Processing 210/701 atomic regions from SNP 62714 to 63314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,771 DEBUG Processing 279/747 atomic regions from SNP 83501 to 84101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,846 DEBUG Processing 261/730 atomic regions from SNP 78166 to 78766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,924 DEBUG Processing 586/854 atomic regions from SNP 175626 to 176226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,007 DEBUG Processing 211/701 atomic regions from SNP 63014 to 63614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,021 DEBUG Processing 280/747 atomic regions from SNP 83801 to 84401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,087 DEBUG Processing 262/730 atomic regions from SNP 78466 to 79066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,192 DEBUG Processing 587/854 atomic regions from SNP 175926 to 176526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,248 DEBUG Processing 212/701 atomic regions from SNP 63314 to 63914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,273 DEBUG Processing 281/747 atomic regions from SNP 84101 to 84701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,340 DEBUG Processing 263/730 atomic regions from SNP 78766 to 79366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,443 DEBUG Processing 588/854 atomic regions from SNP 176226 to 176826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,488 DEBUG Processing 213/701 atomic regions from SNP 63614 to 64214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,518 DEBUG Processing 282/747 atomic regions from SNP 84401 to 85001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,580 DEBUG Processing 264/730 atomic regions from SNP 79066 to 79666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,699 DEBUG Processing 589/854 atomic regions from SNP 176526 to 177126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,736 DEBUG Processing 214/701 atomic regions from SNP 63914 to 64514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,770 DEBUG Processing 283/747 atomic regions from SNP 84701 to 85301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,824 DEBUG Processing 265/730 atomic regions from SNP 79366 to 79966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,958 DEBUG Processing 590/854 atomic regions from SNP 176826 to 177426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,982 DEBUG Processing 215/701 atomic regions from SNP 64214 to 64814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,024 DEBUG Processing 284/747 atomic regions from SNP 85001 to 85601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,070 DEBUG Processing 266/730 atomic regions from SNP 79666 to 80266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,217 DEBUG Processing 591/854 atomic regions from SNP 177126 to 177726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,248 DEBUG Processing 216/701 atomic regions from SNP 64514 to 65114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,278 DEBUG Processing 285/747 atomic regions from SNP 85301 to 85901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,317 DEBUG Processing 267/730 atomic regions from SNP 79966 to 80566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,481 DEBUG Processing 592/854 atomic regions from SNP 177426 to 178026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,538 DEBUG Processing 217/701 atomic regions from SNP 64814 to 65414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,540 DEBUG Processing 286/747 atomic regions from SNP 85601 to 86201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,570 DEBUG Processing 268/730 atomic regions from SNP 80266 to 80866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,742 DEBUG Processing 593/854 atomic regions from SNP 177726 to 178326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,794 DEBUG Processing 287/747 atomic regions from SNP 85901 to 86501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,803 DEBUG Processing 218/701 atomic regions from SNP 65114 to 65714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,823 DEBUG Processing 269/730 atomic regions from SNP 80566 to 81166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,006 DEBUG Processing 594/854 atomic regions from SNP 178026 to 178626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,048 DEBUG Processing 288/747 atomic regions from SNP 86201 to 86801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,056 DEBUG Processing 219/701 atomic regions from SNP 65414 to 66014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,073 DEBUG Processing 270/730 atomic regions from SNP 80866 to 81466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,272 DEBUG Processing 595/854 atomic regions from SNP 178326 to 178926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,304 DEBUG Processing 289/747 atomic regions from SNP 86501 to 87101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,308 DEBUG Processing 220/701 atomic regions from SNP 65714 to 66314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,323 DEBUG Processing 271/730 atomic regions from SNP 81166 to 81766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,535 DEBUG Processing 596/854 atomic regions from SNP 178626 to 179226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,558 DEBUG Processing 290/747 atomic regions from SNP 86801 to 87401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,561 DEBUG Processing 221/701 atomic regions from SNP 66014 to 66614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,576 DEBUG Processing 272/730 atomic regions from SNP 81466 to 82066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,798 DEBUG Processing 597/854 atomic regions from SNP 178926 to 179526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,815 DEBUG Processing 222/701 atomic regions from SNP 66314 to 66914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,816 DEBUG Processing 291/747 atomic regions from SNP 87101 to 87701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,828 DEBUG Processing 273/730 atomic regions from SNP 81766 to 82366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,062 DEBUG Processing 598/854 atomic regions from SNP 179226 to 179826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,066 DEBUG Processing 223/701 atomic regions from SNP 66614 to 67214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,070 DEBUG Processing 292/747 atomic regions from SNP 87401 to 88001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,080 DEBUG Processing 274/730 atomic regions from SNP 82066 to 82666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,317 DEBUG Processing 224/701 atomic regions from SNP 66914 to 67514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,325 DEBUG Processing 293/747 atomic regions from SNP 87701 to 88301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,330 DEBUG Processing 599/854 atomic regions from SNP 179526 to 180126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,332 DEBUG Processing 275/730 atomic regions from SNP 82366 to 82966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,559 DEBUG Processing 225/701 atomic regions from SNP 67214 to 67814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,577 DEBUG Processing 294/747 atomic regions from SNP 88001 to 88601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,578 DEBUG Processing 276/730 atomic regions from SNP 82666 to 83266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,589 DEBUG Processing 600/854 atomic regions from SNP 179826 to 180426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,799 DEBUG Processing 226/701 atomic regions from SNP 67514 to 68114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,821 DEBUG Processing 295/747 atomic regions from SNP 88301 to 88901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,823 DEBUG Processing 277/730 atomic regions from SNP 82966 to 83566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,846 DEBUG Processing 601/854 atomic regions from SNP 180126 to 180726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,041 DEBUG Processing 227/701 atomic regions from SNP 67814 to 68414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,073 DEBUG Processing 278/730 atomic regions from SNP 83266 to 83866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,077 DEBUG Processing 296/747 atomic regions from SNP 88601 to 89201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,108 DEBUG Processing 602/854 atomic regions from SNP 180426 to 181026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,278 DEBUG Processing 228/701 atomic regions from SNP 68114 to 68714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,324 DEBUG Processing 279/730 atomic regions from SNP 83566 to 84166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,331 DEBUG Processing 297/747 atomic regions from SNP 88901 to 89501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,367 DEBUG Processing 603/854 atomic regions from SNP 180726 to 181326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,524 DEBUG Processing 229/701 atomic regions from SNP 68414 to 69014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,579 DEBUG Processing 280/730 atomic regions from SNP 83866 to 84466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,587 DEBUG Processing 298/747 atomic regions from SNP 89201 to 89801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,630 DEBUG Processing 604/854 atomic regions from SNP 181026 to 181626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,796 DEBUG Processing 230/701 atomic regions from SNP 68714 to 69314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,840 DEBUG Processing 281/730 atomic regions from SNP 84166 to 84766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,846 DEBUG Processing 299/747 atomic regions from SNP 89501 to 90101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,900 DEBUG Processing 605/854 atomic regions from SNP 181326 to 181926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,046 DEBUG Processing 231/701 atomic regions from SNP 69014 to 69614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,090 DEBUG Processing 282/730 atomic regions from SNP 84466 to 85066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,100 DEBUG Processing 300/747 atomic regions from SNP 89801 to 90401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,159 DEBUG Processing 606/854 atomic regions from SNP 181626 to 182226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,285 DEBUG Processing 232/701 atomic regions from SNP 69314 to 69914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,338 DEBUG Processing 283/730 atomic regions from SNP 84766 to 85366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,352 DEBUG Processing 301/747 atomic regions from SNP 90101 to 90701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,418 DEBUG Processing 607/854 atomic regions from SNP 181926 to 182526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,527 DEBUG Processing 233/701 atomic regions from SNP 69614 to 70214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,592 DEBUG Processing 284/730 atomic regions from SNP 85066 to 85666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,607 DEBUG Processing 302/747 atomic regions from SNP 90401 to 91001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,682 DEBUG Processing 608/854 atomic regions from SNP 182226 to 182826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,760 DEBUG Processing 234/701 atomic regions from SNP 69914 to 70514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,838 DEBUG Processing 285/730 atomic regions from SNP 85366 to 85966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,852 DEBUG Processing 303/747 atomic regions from SNP 90701 to 91301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,933 DEBUG Processing 609/854 atomic regions from SNP 182526 to 183126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,992 DEBUG Processing 235/701 atomic regions from SNP 70214 to 70814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,080 DEBUG Processing 286/730 atomic regions from SNP 85666 to 86266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,100 DEBUG Processing 304/747 atomic regions from SNP 91001 to 91601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,188 DEBUG Processing 610/854 atomic regions from SNP 182826 to 183426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,242 DEBUG Processing 236/701 atomic regions from SNP 70514 to 71114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,316 DEBUG Processing 287/730 atomic regions from SNP 85966 to 86566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,342 DEBUG Processing 305/747 atomic regions from SNP 91301 to 91901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,447 DEBUG Processing 611/854 atomic regions from SNP 183126 to 183726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,495 DEBUG Processing 237/701 atomic regions from SNP 70814 to 71414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,561 DEBUG Processing 288/730 atomic regions from SNP 86266 to 86866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,603 DEBUG Processing 306/747 atomic regions from SNP 91601 to 92201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,693 DEBUG Processing 612/854 atomic regions from SNP 183426 to 184026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,723 DEBUG Processing 238/701 atomic regions from SNP 71114 to 71714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,801 DEBUG Processing 289/730 atomic regions from SNP 86566 to 87166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,854 DEBUG Processing 307/747 atomic regions from SNP 91901 to 92501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,964 DEBUG Processing 613/854 atomic regions from SNP 183726 to 184326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,972 DEBUG Processing 239/701 atomic regions from SNP 71414 to 72014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,042 DEBUG Processing 290/730 atomic regions from SNP 86866 to 87466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,094 DEBUG Processing 308/747 atomic regions from SNP 92201 to 92801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,214 DEBUG Processing 240/701 atomic regions from SNP 71714 to 72314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,223 DEBUG Processing 614/854 atomic regions from SNP 184026 to 184626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,287 DEBUG Processing 291/730 atomic regions from SNP 87166 to 87766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,336 DEBUG Processing 309/747 atomic regions from SNP 92501 to 93101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,465 DEBUG Processing 615/854 atomic regions from SNP 184326 to 184926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,468 DEBUG Processing 241/701 atomic regions from SNP 72014 to 72614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,515 DEBUG Processing 292/730 atomic regions from SNP 87466 to 88066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,568 DEBUG Processing 310/747 atomic regions from SNP 92801 to 93401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,715 DEBUG Processing 616/854 atomic regions from SNP 184626 to 185226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,717 DEBUG Processing 242/701 atomic regions from SNP 72314 to 72914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,756 DEBUG Processing 293/730 atomic regions from SNP 87766 to 88366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,812 DEBUG Processing 311/747 atomic regions from SNP 93101 to 93701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,954 DEBUG Processing 243/701 atomic regions from SNP 72614 to 73214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,964 DEBUG Processing 617/854 atomic regions from SNP 184926 to 185526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,998 DEBUG Processing 294/730 atomic regions from SNP 88066 to 88666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,052 DEBUG Processing 312/747 atomic regions from SNP 93401 to 94001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,185 DEBUG Processing 244/701 atomic regions from SNP 72914 to 73514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,209 DEBUG Processing 618/854 atomic regions from SNP 185226 to 185826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,238 DEBUG Processing 295/730 atomic regions from SNP 88366 to 88966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,293 DEBUG Processing 313/747 atomic regions from SNP 93701 to 94301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,419 DEBUG Processing 245/701 atomic regions from SNP 73214 to 73814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,456 DEBUG Processing 619/854 atomic regions from SNP 185526 to 186126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,480 DEBUG Processing 296/730 atomic regions from SNP 88666 to 89266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,541 DEBUG Processing 314/747 atomic regions from SNP 94001 to 94601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,661 DEBUG Processing 246/701 atomic regions from SNP 73514 to 74114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,710 DEBUG Processing 620/854 atomic regions from SNP 185826 to 186426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,722 DEBUG Processing 297/730 atomic regions from SNP 88966 to 89566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,781 DEBUG Processing 315/747 atomic regions from SNP 94301 to 94901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,884 DEBUG Processing 247/701 atomic regions from SNP 73814 to 74414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,953 DEBUG Processing 298/730 atomic regions from SNP 89266 to 89866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,953 DEBUG Processing 621/854 atomic regions from SNP 186126 to 186726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,014 DEBUG Processing 316/747 atomic regions from SNP 94601 to 95201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,110 DEBUG Processing 248/701 atomic regions from SNP 74114 to 74714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,181 DEBUG Processing 299/730 atomic regions from SNP 89566 to 90166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,195 DEBUG Processing 622/854 atomic regions from SNP 186426 to 187026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,247 DEBUG Processing 317/747 atomic regions from SNP 94901 to 95501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,344 DEBUG Processing 249/701 atomic regions from SNP 74414 to 75014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,417 DEBUG Processing 300/730 atomic regions from SNP 89866 to 90466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,455 DEBUG Processing 623/854 atomic regions from SNP 186726 to 187326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,489 DEBUG Processing 318/747 atomic regions from SNP 95201 to 95801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,584 DEBUG Processing 250/701 atomic regions from SNP 74714 to 75314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,653 DEBUG Processing 301/730 atomic regions from SNP 90166 to 90766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,707 DEBUG Processing 624/854 atomic regions from SNP 187026 to 187626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,734 DEBUG Processing 319/747 atomic regions from SNP 95501 to 96101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,813 DEBUG Processing 251/701 atomic regions from SNP 75014 to 75614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,882 DEBUG Processing 302/730 atomic regions from SNP 90466 to 91066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,965 DEBUG Processing 625/854 atomic regions from SNP 187326 to 187926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,999 DEBUG Processing 320/747 atomic regions from SNP 95801 to 96401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,054 DEBUG Processing 252/701 atomic regions from SNP 75314 to 75914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,116 DEBUG Processing 303/730 atomic regions from SNP 90766 to 91366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,215 DEBUG Processing 626/854 atomic regions from SNP 187626 to 188226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,240 DEBUG Processing 321/747 atomic regions from SNP 96101 to 96701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,293 DEBUG Processing 253/701 atomic regions from SNP 75614 to 76214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,345 DEBUG Processing 304/730 atomic regions from SNP 91066 to 91666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,462 DEBUG Processing 627/854 atomic regions from SNP 187926 to 188526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,478 DEBUG Processing 322/747 atomic regions from SNP 96401 to 97001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,531 DEBUG Processing 254/701 atomic regions from SNP 75914 to 76514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,596 DEBUG Processing 305/730 atomic regions from SNP 91366 to 91966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,712 DEBUG Processing 628/854 atomic regions from SNP 188226 to 188826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,720 DEBUG Processing 323/747 atomic regions from SNP 96701 to 97301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,779 DEBUG Processing 255/701 atomic regions from SNP 76214 to 76814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,853 DEBUG Processing 306/730 atomic regions from SNP 91666 to 92266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,967 DEBUG Processing 629/854 atomic regions from SNP 188526 to 189126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,967 DEBUG Processing 324/747 atomic regions from SNP 97001 to 97601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,022 DEBUG Processing 256/701 atomic regions from SNP 76514 to 77114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,083 DEBUG Processing 307/730 atomic regions from SNP 91966 to 92566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,216 DEBUG Processing 630/854 atomic regions from SNP 188826 to 189426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,221 DEBUG Processing 325/747 atomic regions from SNP 97301 to 97901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,260 DEBUG Processing 257/701 atomic regions from SNP 76814 to 77414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,311 DEBUG Processing 308/730 atomic regions from SNP 92266 to 92866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,466 DEBUG Processing 631/854 atomic regions from SNP 189126 to 189726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,488 DEBUG Processing 326/747 atomic regions from SNP 97601 to 98201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,503 DEBUG Processing 258/701 atomic regions from SNP 77114 to 77714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,547 DEBUG Processing 309/730 atomic regions from SNP 92566 to 93166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,724 DEBUG Processing 632/854 atomic regions from SNP 189426 to 190026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,756 DEBUG Processing 327/747 atomic regions from SNP 97901 to 98501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,770 DEBUG Processing 259/701 atomic regions from SNP 77414 to 78014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,792 DEBUG Processing 310/730 atomic regions from SNP 92866 to 93466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,981 DEBUG Processing 633/854 atomic regions from SNP 189726 to 190326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,016 DEBUG Processing 328/747 atomic regions from SNP 98201 to 98801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,021 DEBUG Processing 260/701 atomic regions from SNP 77714 to 78314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,038 DEBUG Processing 311/730 atomic regions from SNP 93166 to 93766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,225 DEBUG Processing 634/854 atomic regions from SNP 190026 to 190626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,258 DEBUG Processing 261/701 atomic regions from SNP 78014 to 78614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,272 DEBUG Processing 312/730 atomic regions from SNP 93466 to 94066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,281 DEBUG Processing 329/747 atomic regions from SNP 98501 to 99101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,468 DEBUG Processing 635/854 atomic regions from SNP 190326 to 190926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,491 DEBUG Processing 262/701 atomic regions from SNP 78314 to 78914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,506 DEBUG Processing 313/730 atomic regions from SNP 93766 to 94366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,555 DEBUG Processing 330/747 atomic regions from SNP 98801 to 99401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,718 DEBUG Processing 636/854 atomic regions from SNP 190626 to 191226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,731 DEBUG Processing 263/701 atomic regions from SNP 78614 to 79214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,748 DEBUG Processing 314/730 atomic regions from SNP 94066 to 94666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,823 DEBUG Processing 331/747 atomic regions from SNP 99101 to 99701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,966 DEBUG Processing 637/854 atomic regions from SNP 190926 to 191526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,969 DEBUG Processing 264/701 atomic regions from SNP 78914 to 79514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,984 DEBUG Processing 315/730 atomic regions from SNP 94366 to 94966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,088 DEBUG Processing 332/747 atomic regions from SNP 99401 to 100001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,210 DEBUG Processing 265/701 atomic regions from SNP 79214 to 79814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,214 DEBUG Processing 638/854 atomic regions from SNP 191226 to 191826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,218 DEBUG Processing 316/730 atomic regions from SNP 94666 to 95266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,344 DEBUG Processing 333/747 atomic regions from SNP 99701 to 100301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,445 DEBUG Processing 266/701 atomic regions from SNP 79514 to 80114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,454 DEBUG Processing 317/730 atomic regions from SNP 94966 to 95566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,480 DEBUG Processing 639/854 atomic regions from SNP 191526 to 192126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,593 DEBUG Processing 334/747 atomic regions from SNP 100001 to 100601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,680 DEBUG Processing 267/701 atomic regions from SNP 79814 to 80414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,685 DEBUG Processing 318/730 atomic regions from SNP 95266 to 95866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,735 DEBUG Processing 640/854 atomic regions from SNP 191826 to 192426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,853 DEBUG Processing 335/747 atomic regions from SNP 100301 to 100901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,917 DEBUG Processing 268/701 atomic regions from SNP 80114 to 80714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,921 DEBUG Processing 319/730 atomic regions from SNP 95566 to 96166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,011 DEBUG Processing 641/854 atomic regions from SNP 192126 to 192726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,100 DEBUG Processing 336/747 atomic regions from SNP 100601 to 101201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,152 DEBUG Processing 320/730 atomic regions from SNP 95866 to 96466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,153 DEBUG Processing 269/701 atomic regions from SNP 80414 to 81014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,292 DEBUG Processing 642/854 atomic regions from SNP 192426 to 193026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,356 DEBUG Processing 337/747 atomic regions from SNP 100901 to 101501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,382 DEBUG Processing 270/701 atomic regions from SNP 80714 to 81314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,382 DEBUG Processing 321/730 atomic regions from SNP 96166 to 96766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,570 DEBUG Processing 643/854 atomic regions from SNP 192726 to 193326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,619 DEBUG Processing 338/747 atomic regions from SNP 101201 to 101801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,620 DEBUG Processing 322/730 atomic regions from SNP 96466 to 97066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,622 DEBUG Processing 271/701 atomic regions from SNP 81014 to 81614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,864 DEBUG Processing 272/701 atomic regions from SNP 81314 to 81914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,864 DEBUG Processing 323/730 atomic regions from SNP 96766 to 97366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,868 DEBUG Processing 644/854 atomic regions from SNP 193026 to 193626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,894 DEBUG Processing 339/747 atomic regions from SNP 101501 to 102101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,109 DEBUG Processing 273/701 atomic regions from SNP 81614 to 82214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,124 DEBUG Processing 324/730 atomic regions from SNP 97066 to 97666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,161 DEBUG Processing 645/854 atomic regions from SNP 193326 to 193926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,166 DEBUG Processing 340/747 atomic regions from SNP 101801 to 102401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,375 DEBUG Processing 325/730 atomic regions from SNP 97366 to 97966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,375 DEBUG Processing 274/701 atomic regions from SNP 81914 to 82514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,428 DEBUG Processing 341/747 atomic regions from SNP 102101 to 102701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,441 DEBUG Processing 646/854 atomic regions from SNP 193626 to 194226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,610 DEBUG Processing 326/730 atomic regions from SNP 97666 to 98266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,640 DEBUG Processing 275/701 atomic regions from SNP 82214 to 82814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,686 DEBUG Processing 342/747 atomic regions from SNP 102401 to 103001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,696 DEBUG Processing 647/854 atomic regions from SNP 193926 to 194526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,844 DEBUG Processing 327/730 atomic regions from SNP 97966 to 98566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,878 DEBUG Processing 276/701 atomic regions from SNP 82514 to 83114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,943 DEBUG Processing 343/747 atomic regions from SNP 102701 to 103301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,950 DEBUG Processing 648/854 atomic regions from SNP 194226 to 194826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,083 DEBUG Processing 328/730 atomic regions from SNP 98266 to 98866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,118 DEBUG Processing 277/701 atomic regions from SNP 82814 to 83414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,202 DEBUG Processing 649/854 atomic regions from SNP 194526 to 195126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,208 DEBUG Processing 344/747 atomic regions from SNP 103001 to 103601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,318 DEBUG Processing 329/730 atomic regions from SNP 98566 to 99166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,356 DEBUG Processing 278/701 atomic regions from SNP 83114 to 83714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,457 DEBUG Processing 650/854 atomic regions from SNP 194826 to 195426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,490 DEBUG Processing 345/747 atomic regions from SNP 103301 to 103901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,562 DEBUG Processing 330/730 atomic regions from SNP 98866 to 99466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,597 DEBUG Processing 279/701 atomic regions from SNP 83414 to 84014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,716 DEBUG Processing 651/854 atomic regions from SNP 195126 to 195726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,768 DEBUG Processing 346/747 atomic regions from SNP 103601 to 104201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,805 DEBUG Processing 331/730 atomic regions from SNP 99166 to 99766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,839 DEBUG Processing 280/701 atomic regions from SNP 83714 to 84314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,986 DEBUG Processing 652/854 atomic regions from SNP 195426 to 196026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,042 DEBUG Processing 347/747 atomic regions from SNP 103901 to 104501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,053 DEBUG Processing 332/730 atomic regions from SNP 99466 to 100066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,082 DEBUG Processing 281/701 atomic regions from SNP 84014 to 84614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,263 DEBUG Processing 653/854 atomic regions from SNP 195726 to 196326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,303 DEBUG Processing 333/730 atomic regions from SNP 99766 to 100366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,320 DEBUG Processing 348/747 atomic regions from SNP 104201 to 104801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,320 DEBUG Processing 282/701 atomic regions from SNP 84314 to 84914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,521 DEBUG Processing 654/854 atomic regions from SNP 196026 to 196626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,552 DEBUG Processing 334/730 atomic regions from SNP 100066 to 100666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,569 DEBUG Processing 283/701 atomic regions from SNP 84614 to 85214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,594 DEBUG Processing 349/747 atomic regions from SNP 104501 to 105101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,778 DEBUG Processing 655/854 atomic regions from SNP 196326 to 196926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,794 DEBUG Processing 335/730 atomic regions from SNP 100366 to 100966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,811 DEBUG Processing 284/701 atomic regions from SNP 84914 to 85514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,855 DEBUG Processing 350/747 atomic regions from SNP 104801 to 105401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,039 DEBUG Processing 336/730 atomic regions from SNP 100666 to 101266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,047 DEBUG Processing 656/854 atomic regions from SNP 196626 to 197226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,058 DEBUG Processing 285/701 atomic regions from SNP 85214 to 85814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,126 DEBUG Processing 351/747 atomic regions from SNP 105101 to 105701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,279 DEBUG Processing 337/730 atomic regions from SNP 100966 to 101566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,301 DEBUG Processing 286/701 atomic regions from SNP 85514 to 86114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,329 DEBUG Processing 657/854 atomic regions from SNP 196926 to 197526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,397 DEBUG Processing 352/747 atomic regions from SNP 105401 to 106001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,522 DEBUG Processing 338/730 atomic regions from SNP 101266 to 101866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,559 DEBUG Processing 287/701 atomic regions from SNP 85814 to 86414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,622 DEBUG Processing 658/854 atomic regions from SNP 197226 to 197826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,643 DEBUG Processing 353/747 atomic regions from SNP 105701 to 106301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,760 DEBUG Processing 339/730 atomic regions from SNP 101566 to 102166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,822 DEBUG Processing 288/701 atomic regions from SNP 86114 to 86714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,893 DEBUG Processing 354/747 atomic regions from SNP 106001 to 106601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,918 DEBUG Processing 659/854 atomic regions from SNP 197526 to 198126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,999 DEBUG Processing 340/730 atomic regions from SNP 101866 to 102466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,063 DEBUG Processing 289/701 atomic regions from SNP 86414 to 87014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,137 DEBUG Processing 355/747 atomic regions from SNP 106301 to 106901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,197 DEBUG Processing 660/854 atomic regions from SNP 197826 to 198426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,235 DEBUG Processing 341/730 atomic regions from SNP 102166 to 102766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,297 DEBUG Processing 290/701 atomic regions from SNP 86714 to 87314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,380 DEBUG Processing 356/747 atomic regions from SNP 106601 to 107201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,459 DEBUG Processing 661/854 atomic regions from SNP 198126 to 198726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,476 DEBUG Processing 342/730 atomic regions from SNP 102466 to 103066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,539 DEBUG Processing 291/701 atomic regions from SNP 87014 to 87614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,630 DEBUG Processing 357/747 atomic regions from SNP 106901 to 107501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,725 DEBUG Processing 343/730 atomic regions from SNP 102766 to 103366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,725 DEBUG Processing 662/854 atomic regions from SNP 198426 to 199026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,785 DEBUG Processing 292/701 atomic regions from SNP 87314 to 87914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,885 DEBUG Processing 358/747 atomic regions from SNP 107201 to 107801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,972 DEBUG Processing 344/730 atomic regions from SNP 103066 to 103666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,984 DEBUG Processing 663/854 atomic regions from SNP 198726 to 199326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,032 DEBUG Processing 293/701 atomic regions from SNP 87614 to 88214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,125 DEBUG Processing 359/747 atomic regions from SNP 107501 to 108101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,219 DEBUG Processing 345/730 atomic regions from SNP 103366 to 103966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,245 DEBUG Processing 664/854 atomic regions from SNP 199026 to 199626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,286 DEBUG Processing 294/701 atomic regions from SNP 87914 to 88514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,373 DEBUG Processing 360/747 atomic regions from SNP 107801 to 108401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,461 DEBUG Processing 346/730 atomic regions from SNP 103666 to 104266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,501 DEBUG Processing 665/854 atomic regions from SNP 199326 to 199926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,531 DEBUG Processing 295/701 atomic regions from SNP 88214 to 88814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,615 DEBUG Processing 361/747 atomic regions from SNP 108101 to 108701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,706 DEBUG Processing 347/730 atomic regions from SNP 103966 to 104566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,762 DEBUG Processing 666/854 atomic regions from SNP 199626 to 200226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,782 DEBUG Processing 296/701 atomic regions from SNP 88514 to 89114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,863 DEBUG Processing 362/747 atomic regions from SNP 108401 to 109001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,950 DEBUG Processing 348/730 atomic regions from SNP 104266 to 104866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,023 DEBUG Processing 667/854 atomic regions from SNP 199926 to 200526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,032 DEBUG Processing 297/701 atomic regions from SNP 88814 to 89414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,108 DEBUG Processing 363/747 atomic regions from SNP 108701 to 109301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,189 DEBUG Processing 349/730 atomic regions from SNP 104566 to 105166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,279 DEBUG Processing 298/701 atomic regions from SNP 89114 to 89714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,281 DEBUG Processing 668/854 atomic regions from SNP 200226 to 200826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,351 DEBUG Processing 364/747 atomic regions from SNP 109001 to 109601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,431 DEBUG Processing 350/730 atomic regions from SNP 104866 to 105466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,530 DEBUG Processing 299/701 atomic regions from SNP 89414 to 90014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,542 DEBUG Processing 669/854 atomic regions from SNP 200526 to 201126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,600 DEBUG Processing 365/747 atomic regions from SNP 109301 to 109901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,677 DEBUG Processing 351/730 atomic regions from SNP 105166 to 105766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,782 DEBUG Processing 300/701 atomic regions from SNP 89714 to 90314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,832 DEBUG Processing 670/854 atomic regions from SNP 200826 to 201426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,861 DEBUG Processing 366/747 atomic regions from SNP 109601 to 110201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,924 DEBUG Processing 352/730 atomic regions from SNP 105466 to 106066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,028 DEBUG Processing 301/701 atomic regions from SNP 90014 to 90614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,107 DEBUG Processing 367/747 atomic regions from SNP 109901 to 110501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,121 DEBUG Processing 671/854 atomic regions from SNP 201126 to 201726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,167 DEBUG Processing 353/730 atomic regions from SNP 105766 to 106366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,273 DEBUG Processing 302/701 atomic regions from SNP 90314 to 90914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,349 DEBUG Processing 368/747 atomic regions from SNP 110201 to 110801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,391 DEBUG Processing 672/854 atomic regions from SNP 201426 to 202026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,406 DEBUG Processing 354/730 atomic regions from SNP 106066 to 106666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,513 DEBUG Processing 303/701 atomic regions from SNP 90614 to 91214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,597 DEBUG Processing 369/747 atomic regions from SNP 110501 to 111101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,650 DEBUG Processing 355/730 atomic regions from SNP 106366 to 106966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,655 DEBUG Processing 673/854 atomic regions from SNP 201726 to 202326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,751 DEBUG Processing 304/701 atomic regions from SNP 90914 to 91514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,841 DEBUG Processing 370/747 atomic regions from SNP 110801 to 111401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,893 DEBUG Processing 356/730 atomic regions from SNP 106666 to 107266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,911 DEBUG Processing 674/854 atomic regions from SNP 202026 to 202626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,991 DEBUG Processing 305/701 atomic regions from SNP 91214 to 91814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,082 DEBUG Processing 371/747 atomic regions from SNP 111101 to 111701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,135 DEBUG Processing 357/730 atomic regions from SNP 106966 to 107566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,166 DEBUG Processing 675/854 atomic regions from SNP 202326 to 202926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,238 DEBUG Processing 306/701 atomic regions from SNP 91514 to 92114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,326 DEBUG Processing 372/747 atomic regions from SNP 111401 to 112001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,374 DEBUG Processing 358/730 atomic regions from SNP 107266 to 107866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,417 DEBUG Processing 676/854 atomic regions from SNP 202626 to 203226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,476 DEBUG Processing 307/701 atomic regions from SNP 91814 to 92414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,574 DEBUG Processing 373/747 atomic regions from SNP 111701 to 112301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,620 DEBUG Processing 359/730 atomic regions from SNP 107566 to 108166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,675 DEBUG Processing 677/854 atomic regions from SNP 202926 to 203526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,748 DEBUG Processing 308/701 atomic regions from SNP 92114 to 92714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,822 DEBUG Processing 374/747 atomic regions from SNP 112001 to 112601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,864 DEBUG Processing 360/730 atomic regions from SNP 107866 to 108466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,931 DEBUG Processing 678/854 atomic regions from SNP 203226 to 203826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,021 DEBUG Processing 309/701 atomic regions from SNP 92414 to 93014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,064 DEBUG Processing 375/747 atomic regions from SNP 112301 to 112901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,109 DEBUG Processing 361/730 atomic regions from SNP 108166 to 108766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,200 DEBUG Processing 679/854 atomic regions from SNP 203526 to 204126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,290 DEBUG Processing 310/701 atomic regions from SNP 92714 to 93314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,309 DEBUG Processing 376/747 atomic regions from SNP 112601 to 113201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,344 DEBUG Processing 362/730 atomic regions from SNP 108466 to 109066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,488 DEBUG Processing 680/854 atomic regions from SNP 203826 to 204426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,561 DEBUG Processing 377/747 atomic regions from SNP 112901 to 113501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,565 DEBUG Processing 311/701 atomic regions from SNP 93014 to 93614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,590 DEBUG Processing 363/730 atomic regions from SNP 108766 to 109366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,769 DEBUG Processing 681/854 atomic regions from SNP 204126 to 204726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,816 DEBUG Processing 378/747 atomic regions from SNP 113201 to 113801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,836 DEBUG Processing 312/701 atomic regions from SNP 93314 to 93914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,837 DEBUG Processing 364/730 atomic regions from SNP 109066 to 109666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,037 DEBUG Processing 682/854 atomic regions from SNP 204426 to 205026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,075 DEBUG Processing 379/747 atomic regions from SNP 113501 to 114101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,088 DEBUG Processing 365/730 atomic regions from SNP 109366 to 109966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,118 DEBUG Processing 313/701 atomic regions from SNP 93614 to 94214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,306 DEBUG Processing 683/854 atomic regions from SNP 204726 to 205326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,331 DEBUG Processing 380/747 atomic regions from SNP 113801 to 114401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,341 DEBUG Processing 366/730 atomic regions from SNP 109666 to 110266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,402 DEBUG Processing 314/701 atomic regions from SNP 93914 to 94514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,584 DEBUG Processing 381/747 atomic regions from SNP 114101 to 114701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,587 DEBUG Processing 684/854 atomic regions from SNP 205026 to 205626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,589 DEBUG Processing 367/730 atomic regions from SNP 109966 to 110566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,681 DEBUG Processing 315/701 atomic regions from SNP 94214 to 94814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,832 DEBUG Processing 382/747 atomic regions from SNP 114401 to 115001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,844 DEBUG Processing 368/730 atomic regions from SNP 110266 to 110866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,872 DEBUG Processing 685/854 atomic regions from SNP 205326 to 205926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,934 DEBUG Processing 316/701 atomic regions from SNP 94514 to 95114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,078 DEBUG Processing 383/747 atomic regions from SNP 114701 to 115301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,087 DEBUG Processing 369/730 atomic regions from SNP 110566 to 111166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,148 DEBUG Processing 686/854 atomic regions from SNP 205626 to 206226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,197 DEBUG Processing 317/701 atomic regions from SNP 94814 to 95414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,324 DEBUG Processing 384/747 atomic regions from SNP 115001 to 115601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,331 DEBUG Processing 370/730 atomic regions from SNP 110866 to 111466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,431 DEBUG Processing 687/854 atomic regions from SNP 205926 to 206526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,457 DEBUG Processing 318/701 atomic regions from SNP 95114 to 95714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,568 DEBUG Processing 371/730 atomic regions from SNP 111166 to 111766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,578 DEBUG Processing 385/747 atomic regions from SNP 115301 to 115901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,712 DEBUG Processing 688/854 atomic regions from SNP 206226 to 206826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,729 DEBUG Processing 319/701 atomic regions from SNP 95414 to 96014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,802 DEBUG Processing 372/730 atomic regions from SNP 111466 to 112066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,814 DEBUG Processing 386/747 atomic regions from SNP 115601 to 116201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,993 DEBUG Processing 689/854 atomic regions from SNP 206526 to 207126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,994 DEBUG Processing 320/701 atomic regions from SNP 95714 to 96314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,049 DEBUG Processing 373/730 atomic regions from SNP 111766 to 112366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,063 DEBUG Processing 387/747 atomic regions from SNP 115901 to 116501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,252 DEBUG Processing 321/701 atomic regions from SNP 96014 to 96614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,301 DEBUG Processing 690/854 atomic regions from SNP 206826 to 207426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,321 DEBUG Processing 388/747 atomic regions from SNP 116201 to 116801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,323 DEBUG Processing 374/730 atomic regions from SNP 112066 to 112666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,500 DEBUG Processing 322/701 atomic regions from SNP 96314 to 96914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,584 DEBUG Processing 389/747 atomic regions from SNP 116501 to 117101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,596 DEBUG Processing 691/854 atomic regions from SNP 207126 to 207726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,600 DEBUG Processing 375/730 atomic regions from SNP 112366 to 112966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,741 DEBUG Processing 323/701 atomic regions from SNP 96614 to 97214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,851 DEBUG Processing 390/747 atomic regions from SNP 116801 to 117401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,878 DEBUG Processing 692/854 atomic regions from SNP 207426 to 208026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,879 DEBUG Processing 376/730 atomic regions from SNP 112666 to 113266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,975 DEBUG Processing 324/701 atomic regions from SNP 96914 to 97514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,116 DEBUG Processing 391/747 atomic regions from SNP 117101 to 117701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,134 DEBUG Processing 693/854 atomic regions from SNP 207726 to 208326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,155 DEBUG Processing 377/730 atomic regions from SNP 112966 to 113566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,211 DEBUG Processing 325/701 atomic regions from SNP 97214 to 97814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,360 DEBUG Processing 392/747 atomic regions from SNP 117401 to 118001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,388 DEBUG Processing 694/854 atomic regions from SNP 208026 to 208626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,433 DEBUG Processing 378/730 atomic regions from SNP 113266 to 113866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,451 DEBUG Processing 326/701 atomic regions from SNP 97514 to 98114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,609 DEBUG Processing 393/747 atomic regions from SNP 117701 to 118301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,653 DEBUG Processing 695/854 atomic regions from SNP 208326 to 208926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,700 DEBUG Processing 327/701 atomic regions from SNP 97814 to 98414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,721 DEBUG Processing 379/730 atomic regions from SNP 113566 to 114166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,862 DEBUG Processing 394/747 atomic regions from SNP 118001 to 118601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,921 DEBUG Processing 696/854 atomic regions from SNP 208626 to 209226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,955 DEBUG Processing 328/701 atomic regions from SNP 98114 to 98714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,013 DEBUG Processing 380/730 atomic regions from SNP 113866 to 114466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,112 DEBUG Processing 395/747 atomic regions from SNP 118301 to 118901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,187 DEBUG Processing 697/854 atomic regions from SNP 208926 to 209526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,218 DEBUG Processing 329/701 atomic regions from SNP 98414 to 99014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,304 DEBUG Processing 381/730 atomic regions from SNP 114166 to 114766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,371 DEBUG Processing 396/747 atomic regions from SNP 118601 to 119201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,466 DEBUG Processing 698/854 atomic regions from SNP 209226 to 209826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,469 DEBUG Processing 330/701 atomic regions from SNP 98714 to 99314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,567 DEBUG Processing 382/730 atomic regions from SNP 114466 to 115066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,620 DEBUG Processing 397/747 atomic regions from SNP 118901 to 119501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,720 DEBUG Processing 331/701 atomic regions from SNP 99014 to 99614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,748 DEBUG Processing 699/854 atomic regions from SNP 209526 to 210126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,830 DEBUG Processing 383/730 atomic regions from SNP 114766 to 115366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,885 DEBUG Processing 398/747 atomic regions from SNP 119201 to 119801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,970 DEBUG Processing 332/701 atomic regions from SNP 99314 to 99914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,039 DEBUG Processing 700/854 atomic regions from SNP 209826 to 210426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,107 DEBUG Processing 384/730 atomic regions from SNP 115066 to 115666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,128 DEBUG Processing 399/747 atomic regions from SNP 119501 to 120101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,221 DEBUG Processing 333/701 atomic regions from SNP 99614 to 100214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,331 DEBUG Processing 701/854 atomic regions from SNP 210126 to 210726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,373 DEBUG Processing 400/747 atomic regions from SNP 119801 to 120401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,393 DEBUG Processing 385/730 atomic regions from SNP 115366 to 115966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,471 DEBUG Processing 334/701 atomic regions from SNP 99914 to 100514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,590 DEBUG Processing 702/854 atomic regions from SNP 210426 to 211026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,626 DEBUG Processing 401/747 atomic regions from SNP 120101 to 120701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,665 DEBUG Processing 386/730 atomic regions from SNP 115666 to 116266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,722 DEBUG Processing 335/701 atomic regions from SNP 100214 to 100814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,853 DEBUG Processing 703/854 atomic regions from SNP 210726 to 211326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,875 DEBUG Processing 402/747 atomic regions from SNP 120401 to 121001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,917 DEBUG Processing 387/730 atomic regions from SNP 115966 to 116566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,991 DEBUG Processing 336/701 atomic regions from SNP 100514 to 101114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,113 DEBUG Processing 704/854 atomic regions from SNP 211026 to 211626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,129 DEBUG Processing 403/747 atomic regions from SNP 120701 to 121301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,186 DEBUG Processing 388/730 atomic regions from SNP 116266 to 116866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,276 DEBUG Processing 337/701 atomic regions from SNP 100814 to 101414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,377 DEBUG Processing 705/854 atomic regions from SNP 211326 to 211926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,383 DEBUG Processing 404/747 atomic regions from SNP 121001 to 121601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,458 DEBUG Processing 389/730 atomic regions from SNP 116566 to 117166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,523 DEBUG Processing 338/701 atomic regions from SNP 101114 to 101714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,636 DEBUG Processing 405/747 atomic regions from SNP 121301 to 121901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,641 DEBUG Processing 706/854 atomic regions from SNP 211626 to 212226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,742 DEBUG Processing 390/730 atomic regions from SNP 116866 to 117466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,761 DEBUG Processing 339/701 atomic regions from SNP 101414 to 102014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,886 DEBUG Processing 406/747 atomic regions from SNP 121601 to 122201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,905 DEBUG Processing 707/854 atomic regions from SNP 211926 to 212526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,009 DEBUG Processing 340/701 atomic regions from SNP 101714 to 102314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,013 DEBUG Processing 391/730 atomic regions from SNP 117166 to 117766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,133 DEBUG Processing 407/747 atomic regions from SNP 121901 to 122501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,187 DEBUG Processing 708/854 atomic regions from SNP 212226 to 212826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,263 DEBUG Processing 392/730 atomic regions from SNP 117466 to 118066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,275 DEBUG Processing 341/701 atomic regions from SNP 102014 to 102614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,380 DEBUG Processing 408/747 atomic regions from SNP 122201 to 122801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,471 DEBUG Processing 709/854 atomic regions from SNP 212526 to 213126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,507 DEBUG Processing 393/730 atomic regions from SNP 117766 to 118366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,520 DEBUG Processing 342/701 atomic regions from SNP 102314 to 102914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,614 DEBUG Processing 409/747 atomic regions from SNP 122501 to 123101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,755 DEBUG Processing 394/730 atomic regions from SNP 118066 to 118666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,768 DEBUG Processing 343/701 atomic regions from SNP 102614 to 103214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,772 DEBUG Processing 710/854 atomic regions from SNP 212826 to 213426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,849 DEBUG Processing 410/747 atomic regions from SNP 122801 to 123401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,005 DEBUG Processing 395/730 atomic regions from SNP 118366 to 118966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,021 DEBUG Processing 344/701 atomic regions from SNP 102914 to 103514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,074 DEBUG Processing 711/854 atomic regions from SNP 213126 to 213726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,091 DEBUG Processing 411/747 atomic regions from SNP 123101 to 123701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,249 DEBUG Processing 396/730 atomic regions from SNP 118666 to 119266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,269 DEBUG Processing 345/701 atomic regions from SNP 103214 to 103814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,336 DEBUG Processing 412/747 atomic regions from SNP 123401 to 124001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,372 DEBUG Processing 712/854 atomic regions from SNP 213426 to 214026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,489 DEBUG Processing 397/730 atomic regions from SNP 118966 to 119566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,518 DEBUG Processing 346/701 atomic regions from SNP 103514 to 104114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,580 DEBUG Processing 413/747 atomic regions from SNP 123701 to 124301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,667 DEBUG Processing 713/854 atomic regions from SNP 213726 to 214326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,745 DEBUG Processing 398/730 atomic regions from SNP 119266 to 119866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,777 DEBUG Processing 347/701 atomic regions from SNP 103814 to 104414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,821 DEBUG Processing 414/747 atomic regions from SNP 124001 to 124601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,946 DEBUG Processing 714/854 atomic regions from SNP 214026 to 214626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,996 DEBUG Processing 399/730 atomic regions from SNP 119566 to 120166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,032 DEBUG Processing 348/701 atomic regions from SNP 104114 to 104714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,067 DEBUG Processing 415/747 atomic regions from SNP 124301 to 124901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,229 DEBUG Processing 715/854 atomic regions from SNP 214326 to 214926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,251 DEBUG Processing 400/730 atomic regions from SNP 119866 to 120466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,291 DEBUG Processing 349/701 atomic regions from SNP 104414 to 105014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,315 DEBUG Processing 416/747 atomic regions from SNP 124601 to 125201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,494 DEBUG Processing 716/854 atomic regions from SNP 214626 to 215226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,505 DEBUG Processing 401/730 atomic regions from SNP 120166 to 120766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,552 DEBUG Processing 350/701 atomic regions from SNP 104714 to 105314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,567 DEBUG Processing 417/747 atomic regions from SNP 124901 to 125501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,750 DEBUG Processing 402/730 atomic regions from SNP 120466 to 121066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,752 DEBUG Processing 717/854 atomic regions from SNP 214926 to 215526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,810 DEBUG Processing 351/701 atomic regions from SNP 105014 to 105614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,821 DEBUG Processing 418/747 atomic regions from SNP 125201 to 125801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,995 DEBUG Processing 403/730 atomic regions from SNP 120766 to 121366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,013 DEBUG Processing 718/854 atomic regions from SNP 215226 to 215826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,072 DEBUG Processing 352/701 atomic regions from SNP 105314 to 105914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,075 DEBUG Processing 419/747 atomic regions from SNP 125501 to 126101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,265 DEBUG Processing 404/730 atomic regions from SNP 121066 to 121666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,273 DEBUG Processing 719/854 atomic regions from SNP 215526 to 216126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,328 DEBUG Processing 420/747 atomic regions from SNP 125801 to 126401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,328 DEBUG Processing 353/701 atomic regions from SNP 105614 to 106214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,522 DEBUG Processing 405/730 atomic regions from SNP 121366 to 121966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,530 DEBUG Processing 720/854 atomic regions from SNP 215826 to 216426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,591 DEBUG Processing 421/747 atomic regions from SNP 126101 to 126701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,598 DEBUG Processing 354/701 atomic regions from SNP 105914 to 106514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,763 DEBUG Processing 406/730 atomic regions from SNP 121666 to 122266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,786 DEBUG Processing 721/854 atomic regions from SNP 216126 to 216726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,854 DEBUG Processing 355/701 atomic regions from SNP 106214 to 106814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,862 DEBUG Processing 422/747 atomic regions from SNP 126401 to 127001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,998 DEBUG Processing 407/730 atomic regions from SNP 121966 to 122566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,039 DEBUG Processing 722/854 atomic regions from SNP 216426 to 217026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,107 DEBUG Processing 356/701 atomic regions from SNP 106514 to 107114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,136 DEBUG Processing 423/747 atomic regions from SNP 126701 to 127301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,238 DEBUG Processing 408/730 atomic regions from SNP 122266 to 122866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,292 DEBUG Processing 723/854 atomic regions from SNP 216726 to 217326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,360 DEBUG Processing 357/701 atomic regions from SNP 106814 to 107414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,416 DEBUG Processing 424/747 atomic regions from SNP 127001 to 127601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,478 DEBUG Processing 409/730 atomic regions from SNP 122566 to 123166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,549 DEBUG Processing 724/854 atomic regions from SNP 217026 to 217626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,609 DEBUG Processing 358/701 atomic regions from SNP 107114 to 107714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,689 DEBUG Processing 425/747 atomic regions from SNP 127301 to 127901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,722 DEBUG Processing 410/730 atomic regions from SNP 122866 to 123466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,807 DEBUG Processing 725/854 atomic regions from SNP 217326 to 217926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,853 DEBUG Processing 359/701 atomic regions from SNP 107414 to 108014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,937 DEBUG Processing 426/747 atomic regions from SNP 127601 to 128201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,965 DEBUG Processing 411/730 atomic regions from SNP 123166 to 123766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,076 DEBUG Processing 726/854 atomic regions from SNP 217626 to 218226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,090 DEBUG Processing 360/701 atomic regions from SNP 107714 to 108314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,191 DEBUG Processing 427/747 atomic regions from SNP 127901 to 128501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,208 DEBUG Processing 412/730 atomic regions from SNP 123466 to 124066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,334 DEBUG Processing 361/701 atomic regions from SNP 108014 to 108614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,353 DEBUG Processing 727/854 atomic regions from SNP 217926 to 218526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,450 DEBUG Processing 413/730 atomic regions from SNP 123766 to 124366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,462 DEBUG Processing 428/747 atomic regions from SNP 128201 to 128801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,578 DEBUG Processing 362/701 atomic regions from SNP 108314 to 108914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,631 DEBUG Processing 728/854 atomic regions from SNP 218226 to 218826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,696 DEBUG Processing 414/730 atomic regions from SNP 124066 to 124666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,726 DEBUG Processing 429/747 atomic regions from SNP 128501 to 129101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,822 DEBUG Processing 363/701 atomic regions from SNP 108614 to 109214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,890 DEBUG Processing 729/854 atomic regions from SNP 218526 to 219126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,940 DEBUG Processing 415/730 atomic regions from SNP 124366 to 124966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,982 DEBUG Processing 430/747 atomic regions from SNP 128801 to 129401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,065 DEBUG Processing 364/701 atomic regions from SNP 108914 to 109514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,155 DEBUG Processing 730/854 atomic regions from SNP 218826 to 219426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,188 DEBUG Processing 416/730 atomic regions from SNP 124666 to 125266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,239 DEBUG Processing 431/747 atomic regions from SNP 129101 to 129701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,305 DEBUG Processing 365/701 atomic regions from SNP 109214 to 109814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,419 DEBUG Processing 731/854 atomic regions from SNP 219126 to 219726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,430 DEBUG Processing 417/730 atomic regions from SNP 124966 to 125566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,513 DEBUG Processing 432/747 atomic regions from SNP 129401 to 130001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,544 DEBUG Processing 366/701 atomic regions from SNP 109514 to 110114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,686 DEBUG Processing 418/730 atomic regions from SNP 125266 to 125866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,691 DEBUG Processing 732/854 atomic regions from SNP 219426 to 220026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,789 DEBUG Processing 433/747 atomic regions from SNP 129701 to 130301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,796 DEBUG Processing 367/701 atomic regions from SNP 109814 to 110414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,930 DEBUG Processing 419/730 atomic regions from SNP 125566 to 126166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,981 DEBUG Processing 733/854 atomic regions from SNP 219726 to 220326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,041 DEBUG Processing 368/701 atomic regions from SNP 110114 to 110714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,045 DEBUG Processing 434/747 atomic regions from SNP 130001 to 130601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,170 DEBUG Processing 420/730 atomic regions from SNP 125866 to 126466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,240 DEBUG Processing 734/854 atomic regions from SNP 220026 to 220626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,284 DEBUG Processing 369/701 atomic regions from SNP 110414 to 111014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,320 DEBUG Processing 435/747 atomic regions from SNP 130301 to 130901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,409 DEBUG Processing 421/730 atomic regions from SNP 126166 to 126766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,523 DEBUG Processing 735/854 atomic regions from SNP 220326 to 220926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,527 DEBUG Processing 370/701 atomic regions from SNP 110714 to 111314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,581 DEBUG Processing 436/747 atomic regions from SNP 130601 to 131201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,662 DEBUG Processing 422/730 atomic regions from SNP 126466 to 127066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,792 DEBUG Processing 371/701 atomic regions from SNP 111014 to 111614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,801 DEBUG Processing 736/854 atomic regions from SNP 220626 to 221226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,842 DEBUG Processing 437/747 atomic regions from SNP 130901 to 131501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,906 DEBUG Processing 423/730 atomic regions from SNP 126766 to 127366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,052 DEBUG Processing 737/854 atomic regions from SNP 220926 to 221526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,056 DEBUG Processing 372/701 atomic regions from SNP 111314 to 111914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,114 DEBUG Processing 438/747 atomic regions from SNP 131201 to 131801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,153 DEBUG Processing 424/730 atomic regions from SNP 127066 to 127666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,301 DEBUG Processing 373/701 atomic regions from SNP 111614 to 112214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,304 DEBUG Processing 738/854 atomic regions from SNP 221226 to 221826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,382 DEBUG Processing 439/747 atomic regions from SNP 131501 to 132101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,395 DEBUG Processing 425/730 atomic regions from SNP 127366 to 127966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,554 DEBUG Processing 374/701 atomic regions from SNP 111914 to 112514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,555 DEBUG Processing 739/854 atomic regions from SNP 221526 to 222126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,634 DEBUG Processing 426/730 atomic regions from SNP 127666 to 128266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,655 DEBUG Processing 440/747 atomic regions from SNP 131801 to 132401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,802 DEBUG Processing 375/701 atomic regions from SNP 112214 to 112814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,810 DEBUG Processing 740/854 atomic regions from SNP 221826 to 222426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,869 DEBUG Processing 427/730 atomic regions from SNP 127966 to 128566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,921 DEBUG Processing 441/747 atomic regions from SNP 132101 to 132701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,047 DEBUG Processing 376/701 atomic regions from SNP 112514 to 113114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,063 DEBUG Processing 741/854 atomic regions from SNP 222126 to 222726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,104 DEBUG Processing 428/730 atomic regions from SNP 128266 to 128866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,159 DEBUG Processing 442/747 atomic regions from SNP 132401 to 133001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,296 DEBUG Processing 377/701 atomic regions from SNP 112814 to 113414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,321 DEBUG Processing 742/854 atomic regions from SNP 222426 to 223026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,350 DEBUG Processing 429/730 atomic regions from SNP 128566 to 129166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,407 DEBUG Processing 443/747 atomic regions from SNP 132701 to 133301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,543 DEBUG Processing 378/701 atomic regions from SNP 113114 to 113714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,582 DEBUG Processing 743/854 atomic regions from SNP 222726 to 223326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,596 DEBUG Processing 430/730 atomic regions from SNP 128866 to 129466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,648 DEBUG Processing 444/747 atomic regions from SNP 133001 to 133601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,784 DEBUG Processing 379/701 atomic regions from SNP 113414 to 114014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,839 DEBUG Processing 744/854 atomic regions from SNP 223026 to 223626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,863 DEBUG Processing 431/730 atomic regions from SNP 129166 to 129766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,899 DEBUG Processing 445/747 atomic regions from SNP 133301 to 133901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,028 DEBUG Processing 380/701 atomic regions from SNP 113714 to 114314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,102 DEBUG Processing 745/854 atomic regions from SNP 223326 to 223926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,114 DEBUG Processing 432/730 atomic regions from SNP 129466 to 130066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,148 DEBUG Processing 446/747 atomic regions from SNP 133601 to 134201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,265 DEBUG Processing 381/701 atomic regions from SNP 114014 to 114614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,357 DEBUG Processing 746/854 atomic regions from SNP 223626 to 224226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,357 DEBUG Processing 433/730 atomic regions from SNP 129766 to 130366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,425 DEBUG Processing 447/747 atomic regions from SNP 133901 to 134501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,505 DEBUG Processing 382/701 atomic regions from SNP 114314 to 114914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,603 DEBUG Processing 434/730 atomic regions from SNP 130066 to 130666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,615 DEBUG Processing 747/854 atomic regions from SNP 223926 to 224526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,710 DEBUG Processing 448/747 atomic regions from SNP 134201 to 134801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,750 DEBUG Processing 383/701 atomic regions from SNP 114614 to 115214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,846 DEBUG Processing 435/730 atomic regions from SNP 130366 to 130966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,869 DEBUG Processing 748/854 atomic regions from SNP 224226 to 224826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,995 DEBUG Processing 384/701 atomic regions from SNP 114914 to 115514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,995 DEBUG Processing 449/747 atomic regions from SNP 134501 to 135101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,094 DEBUG Processing 436/730 atomic regions from SNP 130666 to 131266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,120 DEBUG Processing 749/854 atomic regions from SNP 224526 to 225126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,228 DEBUG Processing 385/701 atomic regions from SNP 115214 to 115814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,269 DEBUG Processing 450/747 atomic regions from SNP 134801 to 135401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,346 DEBUG Processing 437/730 atomic regions from SNP 130966 to 131566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,366 DEBUG Processing 750/854 atomic regions from SNP 224826 to 225426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,467 DEBUG Processing 386/701 atomic regions from SNP 115514 to 116114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,546 DEBUG Processing 451/747 atomic regions from SNP 135101 to 135701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,607 DEBUG Processing 438/730 atomic regions from SNP 131266 to 131866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,623 DEBUG Processing 751/854 atomic regions from SNP 225126 to 225726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,705 DEBUG Processing 387/701 atomic regions from SNP 115814 to 116414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,823 DEBUG Processing 452/747 atomic regions from SNP 135401 to 136001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,866 DEBUG Processing 439/730 atomic regions from SNP 131566 to 132166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,881 DEBUG Processing 752/854 atomic regions from SNP 225426 to 226026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,953 DEBUG Processing 388/701 atomic regions from SNP 116114 to 116714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,095 DEBUG Processing 453/747 atomic regions from SNP 135701 to 136301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,110 DEBUG Processing 440/730 atomic regions from SNP 131866 to 132466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,139 DEBUG Processing 753/854 atomic regions from SNP 225726 to 226326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,193 DEBUG Processing 389/701 atomic regions from SNP 116414 to 117014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,351 DEBUG Processing 441/730 atomic regions from SNP 132166 to 132766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,374 DEBUG Processing 454/747 atomic regions from SNP 136001 to 136601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,408 DEBUG Processing 754/854 atomic regions from SNP 226026 to 226626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,451 DEBUG Processing 390/701 atomic regions from SNP 116714 to 117314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,599 DEBUG Processing 442/730 atomic regions from SNP 132466 to 133066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,678 DEBUG Processing 455/747 atomic regions from SNP 136301 to 136901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,685 DEBUG Processing 755/854 atomic regions from SNP 226326 to 226926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,715 DEBUG Processing 391/701 atomic regions from SNP 117014 to 117614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,836 DEBUG Processing 443/730 atomic regions from SNP 132766 to 133366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,950 DEBUG Processing 756/854 atomic regions from SNP 226626 to 227226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,969 DEBUG Processing 392/701 atomic regions from SNP 117314 to 117914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,970 DEBUG Processing 456/747 atomic regions from SNP 136601 to 137201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,074 DEBUG Processing 444/730 atomic regions from SNP 133066 to 133666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,215 DEBUG Processing 757/854 atomic regions from SNP 226926 to 227526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,228 DEBUG Processing 393/701 atomic regions from SNP 117614 to 118214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,259 DEBUG Processing 457/747 atomic regions from SNP 136901 to 137501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,311 DEBUG Processing 445/730 atomic regions from SNP 133366 to 133966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,480 DEBUG Processing 758/854 atomic regions from SNP 227226 to 227826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,486 DEBUG Processing 394/701 atomic regions from SNP 117914 to 118514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,552 DEBUG Processing 458/747 atomic regions from SNP 137201 to 137801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,556 DEBUG Processing 446/730 atomic regions from SNP 133666 to 134266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,735 DEBUG Processing 395/701 atomic regions from SNP 118214 to 118814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,738 DEBUG Processing 759/854 atomic regions from SNP 227526 to 228126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,809 DEBUG Processing 447/730 atomic regions from SNP 133966 to 134566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,838 DEBUG Processing 459/747 atomic regions from SNP 137501 to 138101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,023 DEBUG Processing 396/701 atomic regions from SNP 118514 to 119114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,042 DEBUG Processing 760/854 atomic regions from SNP 227826 to 228426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,181 DEBUG Processing 448/730 atomic regions from SNP 134266 to 134866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,206 DEBUG Processing 460/747 atomic regions from SNP 137801 to 138401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,293 DEBUG Processing 397/701 atomic regions from SNP 118814 to 119414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,310 DEBUG Processing 761/854 atomic regions from SNP 228126 to 228726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,417 DEBUG Processing 449/730 atomic regions from SNP 134566 to 135166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,447 DEBUG Processing 461/747 atomic regions from SNP 138101 to 138701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,538 DEBUG Processing 398/701 atomic regions from SNP 119114 to 119714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,563 DEBUG Processing 762/854 atomic regions from SNP 228426 to 229026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,659 DEBUG Processing 450/730 atomic regions from SNP 134866 to 135466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,694 DEBUG Processing 462/747 atomic regions from SNP 138401 to 139001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,797 DEBUG Processing 399/701 atomic regions from SNP 119414 to 120014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,828 DEBUG Processing 763/854 atomic regions from SNP 228726 to 229326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,900 DEBUG Processing 451/730 atomic regions from SNP 135166 to 135766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,946 DEBUG Processing 463/747 atomic regions from SNP 138701 to 139301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,043 DEBUG Processing 400/701 atomic regions from SNP 119714 to 120314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,084 DEBUG Processing 764/854 atomic regions from SNP 229026 to 229626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,143 DEBUG Processing 452/730 atomic regions from SNP 135466 to 136066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,217 DEBUG Processing 464/747 atomic regions from SNP 139001 to 139601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,300 DEBUG Processing 401/701 atomic regions from SNP 120014 to 120614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,351 DEBUG Processing 765/854 atomic regions from SNP 229326 to 229926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,391 DEBUG Processing 453/730 atomic regions from SNP 135766 to 136366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,482 DEBUG Processing 465/747 atomic regions from SNP 139301 to 139901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,550 DEBUG Processing 402/701 atomic regions from SNP 120314 to 120914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,628 DEBUG Processing 766/854 atomic regions from SNP 229626 to 230226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,649 DEBUG Processing 454/730 atomic regions from SNP 136066 to 136666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,730 DEBUG Processing 466/747 atomic regions from SNP 139601 to 140201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,802 DEBUG Processing 403/701 atomic regions from SNP 120614 to 121214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,924 DEBUG Processing 455/730 atomic regions from SNP 136366 to 136966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,928 DEBUG Processing 767/854 atomic regions from SNP 229926 to 230526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,980 DEBUG Processing 467/747 atomic regions from SNP 139901 to 140501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,058 DEBUG Processing 404/701 atomic regions from SNP 120914 to 121514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,192 DEBUG Processing 456/730 atomic regions from SNP 136666 to 137266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,206 DEBUG Processing 768/854 atomic regions from SNP 230226 to 230826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,227 DEBUG Processing 468/747 atomic regions from SNP 140201 to 140801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,297 DEBUG Processing 405/701 atomic regions from SNP 121214 to 121814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,467 DEBUG Processing 469/747 atomic regions from SNP 140501 to 141101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,472 DEBUG Processing 457/730 atomic regions from SNP 136966 to 137566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,483 DEBUG Processing 769/854 atomic regions from SNP 230526 to 231126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,537 DEBUG Processing 406/701 atomic regions from SNP 121514 to 122114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,710 DEBUG Processing 470/747 atomic regions from SNP 140801 to 141401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,744 DEBUG Processing 770/854 atomic regions from SNP 230826 to 231426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,744 DEBUG Processing 458/730 atomic regions from SNP 137266 to 137866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,777 DEBUG Processing 407/701 atomic regions from SNP 121814 to 122414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,951 DEBUG Processing 471/747 atomic regions from SNP 141101 to 141701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,000 DEBUG Processing 771/854 atomic regions from SNP 231126 to 231726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,006 DEBUG Processing 459/730 atomic regions from SNP 137566 to 138166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,019 DEBUG Processing 408/701 atomic regions from SNP 122114 to 122714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,185 DEBUG Processing 472/747 atomic regions from SNP 141401 to 142001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,245 DEBUG Processing 460/730 atomic regions from SNP 137866 to 138466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,251 DEBUG Processing 772/854 atomic regions from SNP 231426 to 232026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,255 DEBUG Processing 409/701 atomic regions from SNP 122414 to 123014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,420 DEBUG Processing 473/747 atomic regions from SNP 141701 to 142301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,499 DEBUG Processing 410/701 atomic regions from SNP 122714 to 123314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,504 DEBUG Processing 773/854 atomic regions from SNP 231726 to 232326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,513 DEBUG Processing 461/730 atomic regions from SNP 138166 to 138766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,658 DEBUG Processing 474/747 atomic regions from SNP 142001 to 142601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,752 DEBUG Processing 411/701 atomic regions from SNP 123014 to 123614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,760 DEBUG Processing 774/854 atomic regions from SNP 232026 to 232626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,793 DEBUG Processing 462/730 atomic regions from SNP 138466 to 139066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,922 DEBUG Processing 475/747 atomic regions from SNP 142301 to 142901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,993 DEBUG Processing 412/701 atomic regions from SNP 123314 to 123914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,013 DEBUG Processing 775/854 atomic regions from SNP 232326 to 232926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,066 DEBUG Processing 463/730 atomic regions from SNP 138766 to 139366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,168 DEBUG Processing 476/747 atomic regions from SNP 142601 to 143201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,210 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:52:49,232 DEBUG Processing 413/701 atomic regions from SNP 123614 to 124214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,261 DEBUG Processing 776/854 atomic regions from SNP 232626 to 233226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,334 DEBUG Processing 464/730 atomic regions from SNP 139066 to 139666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,436 DEBUG Processing 477/747 atomic regions from SNP 142901 to 143501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,492 DEBUG Processing 414/701 atomic regions from SNP 123914 to 124514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,530 DEBUG Processing 777/854 atomic regions from SNP 232926 to 233526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,572 DEBUG Processing 465/730 atomic regions from SNP 139366 to 139966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,687 DEBUG Processing 478/747 atomic regions from SNP 143201 to 143801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,726 DEBUG Processing 415/701 atomic regions from SNP 124214 to 124814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,800 DEBUG Processing 778/854 atomic regions from SNP 233226 to 233826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,824 DEBUG Processing 466/730 atomic regions from SNP 139666 to 140266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,915 DEBUG Processing 479/747 atomic regions from SNP 143501 to 144101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,949 DEBUG Processing 416/701 atomic regions from SNP 124514 to 125114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,055 DEBUG Processing 467/730 atomic regions from SNP 139966 to 140566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,072 DEBUG Processing 779/854 atomic regions from SNP 233526 to 234126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,145 DEBUG Processing 480/747 atomic regions from SNP 143801 to 144401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,179 DEBUG Processing 417/701 atomic regions from SNP 124814 to 125414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,286 DEBUG Processing 468/730 atomic regions from SNP 140266 to 140866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,330 DEBUG Processing 780/854 atomic regions from SNP 233826 to 234426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,373 DEBUG Processing 481/747 atomic regions from SNP 144101 to 144701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,418 DEBUG Processing 418/701 atomic regions from SNP 125114 to 125714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,515 DEBUG Processing 469/730 atomic regions from SNP 140566 to 141166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,578 DEBUG Processing 781/854 atomic regions from SNP 234126 to 234726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,604 DEBUG Processing 482/747 atomic regions from SNP 144401 to 145001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,662 DEBUG Processing 419/701 atomic regions from SNP 125414 to 126014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,741 DEBUG Processing 470/730 atomic regions from SNP 140866 to 141466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,822 DEBUG Processing 782/854 atomic regions from SNP 234426 to 235026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,836 DEBUG Processing 483/747 atomic regions from SNP 144701 to 145301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,904 DEBUG Processing 420/701 atomic regions from SNP 125714 to 126314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,965 DEBUG Processing 471/730 atomic regions from SNP 141166 to 141766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,062 DEBUG Processing 783/854 atomic regions from SNP 234726 to 235326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,079 DEBUG Processing 484/747 atomic regions from SNP 145001 to 145601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,143 DEBUG Processing 421/701 atomic regions from SNP 126014 to 126614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,190 DEBUG Processing 472/730 atomic regions from SNP 141466 to 142066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,302 DEBUG Processing 784/854 atomic regions from SNP 235026 to 235626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,313 DEBUG Processing 485/747 atomic regions from SNP 145301 to 145901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,379 DEBUG Processing 422/701 atomic regions from SNP 126314 to 126914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,417 DEBUG Processing 473/730 atomic regions from SNP 141766 to 142366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,541 DEBUG Processing 486/747 atomic regions from SNP 145601 to 146201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,543 DEBUG Processing 785/854 atomic regions from SNP 235326 to 235926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,628 DEBUG Processing 423/701 atomic regions from SNP 126614 to 127214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,645 DEBUG Processing 474/730 atomic regions from SNP 142066 to 142666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,769 DEBUG Processing 487/747 atomic regions from SNP 145901 to 146501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,782 DEBUG Processing 786/854 atomic regions from SNP 235626 to 236226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,860 DEBUG Processing 424/701 atomic regions from SNP 126914 to 127514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,873 DEBUG Processing 475/730 atomic regions from SNP 142366 to 142966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,016 DEBUG Processing 488/747 atomic regions from SNP 146201 to 146801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,025 DEBUG Processing 787/854 atomic regions from SNP 235926 to 236526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,103 DEBUG Processing 476/730 atomic regions from SNP 142666 to 143266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,113 DEBUG Processing 425/701 atomic regions from SNP 127214 to 127814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,246 DEBUG Processing 489/747 atomic regions from SNP 146501 to 147101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,265 DEBUG Processing 788/854 atomic regions from SNP 236226 to 236826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,333 DEBUG Processing 477/730 atomic regions from SNP 142966 to 143566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,366 DEBUG Processing 426/701 atomic regions from SNP 127514 to 128114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,478 DEBUG Processing 490/747 atomic regions from SNP 146801 to 147401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,515 DEBUG Processing 789/854 atomic regions from SNP 236526 to 237126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,571 DEBUG Processing 478/730 atomic regions from SNP 143266 to 143866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,637 DEBUG Processing 427/701 atomic regions from SNP 127814 to 128414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,711 DEBUG Processing 491/747 atomic regions from SNP 147101 to 147701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,761 DEBUG Processing 790/854 atomic regions from SNP 236826 to 237426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,803 DEBUG Processing 479/730 atomic regions from SNP 143566 to 144166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,881 DEBUG Processing 428/701 atomic regions from SNP 128114 to 128714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,939 DEBUG Processing 492/747 atomic regions from SNP 147401 to 148001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,006 DEBUG Processing 791/854 atomic regions from SNP 237126 to 237726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,044 DEBUG Processing 480/730 atomic regions from SNP 143866 to 144466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,126 DEBUG Processing 429/701 atomic regions from SNP 128414 to 129014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,163 DEBUG Processing 493/747 atomic regions from SNP 147701 to 148301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,250 DEBUG Processing 792/854 atomic regions from SNP 237426 to 238026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,277 DEBUG Processing 481/730 atomic regions from SNP 144166 to 144766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,363 DEBUG Processing 430/701 atomic regions from SNP 128714 to 129314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,392 DEBUG Processing 494/747 atomic regions from SNP 148001 to 148601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,486 DEBUG Processing 793/854 atomic regions from SNP 237726 to 238326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,514 DEBUG Processing 482/730 atomic regions from SNP 144466 to 145066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,601 DEBUG Processing 431/701 atomic regions from SNP 129014 to 129614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,620 DEBUG Processing 495/747 atomic regions from SNP 148301 to 148901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,718 DEBUG Processing 794/854 atomic regions from SNP 238026 to 238626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,757 DEBUG Processing 483/730 atomic regions from SNP 144766 to 145366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,832 DEBUG Processing 432/701 atomic regions from SNP 129314 to 129914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,852 DEBUG Processing 496/747 atomic regions from SNP 148601 to 149201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,950 DEBUG Processing 795/854 atomic regions from SNP 238326 to 238926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,990 DEBUG Processing 484/730 atomic regions from SNP 145066 to 145666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,079 DEBUG Processing 433/701 atomic regions from SNP 129614 to 130214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,085 DEBUG Processing 497/747 atomic regions from SNP 148901 to 149501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,188 DEBUG Processing 796/854 atomic regions from SNP 238626 to 239226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,213 DEBUG Processing 485/730 atomic regions from SNP 145366 to 145966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,337 DEBUG Processing 498/747 atomic regions from SNP 149201 to 149801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,347 DEBUG Processing 434/701 atomic regions from SNP 129914 to 130514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,434 DEBUG Processing 797/854 atomic regions from SNP 238926 to 239526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,441 DEBUG Processing 486/730 atomic regions from SNP 145666 to 146266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,581 DEBUG Processing 499/747 atomic regions from SNP 149501 to 150101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,606 DEBUG Processing 435/701 atomic regions from SNP 130214 to 130814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,672 DEBUG Processing 487/730 atomic regions from SNP 145966 to 146566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,681 DEBUG Processing 798/854 atomic regions from SNP 239226 to 239826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,819 DEBUG Processing 500/747 atomic regions from SNP 149801 to 150401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,872 DEBUG Processing 436/701 atomic regions from SNP 130514 to 131114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,905 DEBUG Processing 488/730 atomic regions from SNP 146266 to 146866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,930 DEBUG Processing 799/854 atomic regions from SNP 239526 to 240126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,061 DEBUG Processing 501/747 atomic regions from SNP 150101 to 150701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,128 DEBUG Processing 437/701 atomic regions from SNP 130814 to 131414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,144 DEBUG Processing 489/730 atomic regions from SNP 146566 to 147166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,181 DEBUG Processing 800/854 atomic regions from SNP 239826 to 240426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,295 DEBUG Processing 502/747 atomic regions from SNP 150401 to 151001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,371 DEBUG Processing 438/701 atomic regions from SNP 131114 to 131714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,383 DEBUG Processing 490/730 atomic regions from SNP 146866 to 147466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,435 DEBUG Processing 801/854 atomic regions from SNP 240126 to 240726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,525 DEBUG Processing 503/747 atomic regions from SNP 150701 to 151301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,620 DEBUG Processing 491/730 atomic regions from SNP 147166 to 147766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,635 DEBUG Processing 439/701 atomic regions from SNP 131414 to 132014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,689 DEBUG Processing 802/854 atomic regions from SNP 240426 to 241026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,767 DEBUG Processing 504/747 atomic regions from SNP 151001 to 151601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,863 DEBUG Processing 492/730 atomic regions from SNP 147466 to 148066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,902 DEBUG Processing 440/701 atomic regions from SNP 131714 to 132314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,944 DEBUG Processing 803/854 atomic regions from SNP 240726 to 241326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,007 DEBUG Processing 505/747 atomic regions from SNP 151301 to 151901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,091 DEBUG Processing 493/730 atomic regions from SNP 147766 to 148366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,142 DEBUG Processing 441/701 atomic regions from SNP 132014 to 132614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,201 DEBUG Processing 804/854 atomic regions from SNP 241026 to 241626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,257 DEBUG Processing 506/747 atomic regions from SNP 151601 to 152201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,321 DEBUG Processing 494/730 atomic regions from SNP 148066 to 148666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,403 DEBUG Processing 442/701 atomic regions from SNP 132314 to 132914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,455 DEBUG Processing 805/854 atomic regions from SNP 241326 to 241926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,509 DEBUG Processing 507/747 atomic regions from SNP 151901 to 152501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,552 DEBUG Processing 495/730 atomic regions from SNP 148366 to 148966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,667 DEBUG Processing 443/701 atomic regions from SNP 132614 to 133214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,713 DEBUG Processing 806/854 atomic regions from SNP 241626 to 242226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,750 DEBUG Processing 508/747 atomic regions from SNP 152201 to 152801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,786 DEBUG Processing 496/730 atomic regions from SNP 148666 to 149266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,929 DEBUG Processing 444/701 atomic regions from SNP 132914 to 133514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,973 DEBUG Processing 807/854 atomic regions from SNP 241926 to 242526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,999 DEBUG Processing 509/747 atomic regions from SNP 152501 to 153101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,027 DEBUG Processing 497/730 atomic regions from SNP 148966 to 149566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,195 DEBUG Processing 445/701 atomic regions from SNP 133214 to 133814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,235 DEBUG Processing 808/854 atomic regions from SNP 242226 to 242826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,247 DEBUG Processing 510/747 atomic regions from SNP 152801 to 153401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,270 DEBUG Processing 498/730 atomic regions from SNP 149266 to 149866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,446 DEBUG Processing 446/701 atomic regions from SNP 133514 to 134114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,498 DEBUG Processing 511/747 atomic regions from SNP 153101 to 153701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,499 DEBUG Processing 809/854 atomic regions from SNP 242526 to 243126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,515 DEBUG Processing 499/730 atomic regions from SNP 149566 to 150166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,695 DEBUG Processing 447/701 atomic regions from SNP 133814 to 134414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,767 DEBUG Processing 512/747 atomic regions from SNP 153401 to 154001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,784 DEBUG Processing 810/854 atomic regions from SNP 242826 to 243426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,791 DEBUG Processing 500/730 atomic regions from SNP 149866 to 150466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,036 DEBUG Processing 448/701 atomic regions from SNP 134114 to 134714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,113 DEBUG Processing 501/730 atomic regions from SNP 150166 to 150766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,115 DEBUG Processing 811/854 atomic regions from SNP 243126 to 243726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,119 DEBUG Processing 513/747 atomic regions from SNP 153701 to 154301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,277 DEBUG Processing 449/701 atomic regions from SNP 134414 to 135014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,367 DEBUG Processing 502/730 atomic regions from SNP 150466 to 151066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,380 DEBUG Processing 812/854 atomic regions from SNP 243426 to 244026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,390 DEBUG Processing 514/747 atomic regions from SNP 154001 to 154601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,499 DEBUG Processing 450/701 atomic regions from SNP 134714 to 135314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,608 DEBUG Processing 503/730 atomic regions from SNP 150766 to 151366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,636 DEBUG Processing 813/854 atomic regions from SNP 243726 to 244326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,659 DEBUG Processing 515/747 atomic regions from SNP 154301 to 154901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,727 DEBUG Processing 451/701 atomic regions from SNP 135014 to 135614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,850 DEBUG Processing 504/730 atomic regions from SNP 151066 to 151666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,904 DEBUG Processing 814/854 atomic regions from SNP 244026 to 244626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,909 DEBUG Processing 516/747 atomic regions from SNP 154601 to 155201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,968 DEBUG Processing 452/701 atomic regions from SNP 135314 to 135914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,086 DEBUG Processing 505/730 atomic regions from SNP 151366 to 151966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,153 DEBUG Processing 517/747 atomic regions from SNP 154901 to 155501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,169 DEBUG Processing 815/854 atomic regions from SNP 244326 to 244926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,202 DEBUG Processing 453/701 atomic regions from SNP 135614 to 136214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,313 DEBUG Processing 506/730 atomic regions from SNP 151666 to 152266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,398 DEBUG Processing 518/747 atomic regions from SNP 155201 to 155801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,433 DEBUG Processing 816/854 atomic regions from SNP 244626 to 245226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,445 DEBUG Processing 454/701 atomic regions from SNP 135914 to 136514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,548 DEBUG Processing 507/730 atomic regions from SNP 151966 to 152566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,649 DEBUG Processing 519/747 atomic regions from SNP 155501 to 156101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,695 DEBUG Processing 455/701 atomic regions from SNP 136214 to 136814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,709 DEBUG Processing 817/854 atomic regions from SNP 244926 to 245526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,782 DEBUG Processing 508/730 atomic regions from SNP 152266 to 152866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,896 DEBUG Processing 520/747 atomic regions from SNP 155801 to 156401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,946 DEBUG Processing 456/701 atomic regions from SNP 136514 to 137114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,976 DEBUG Processing 818/854 atomic regions from SNP 245226 to 245826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,025 DEBUG Processing 509/730 atomic regions from SNP 152566 to 153166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,161 DEBUG Processing 521/747 atomic regions from SNP 156101 to 156701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,210 DEBUG Processing 457/701 atomic regions from SNP 136814 to 137414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,252 DEBUG Processing 819/854 atomic regions from SNP 245526 to 246126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,278 DEBUG Processing 510/730 atomic regions from SNP 152866 to 153466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,408 DEBUG Processing 522/747 atomic regions from SNP 156401 to 157001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,461 DEBUG Processing 458/701 atomic regions from SNP 137114 to 137714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,515 DEBUG Processing 820/854 atomic regions from SNP 245826 to 246426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,530 DEBUG Processing 511/730 atomic regions from SNP 153166 to 153766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,644 DEBUG Processing 523/747 atomic regions from SNP 156701 to 157301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,701 DEBUG Processing 459/701 atomic regions from SNP 137414 to 138014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,773 DEBUG Processing 821/854 atomic regions from SNP 246126 to 246726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,781 DEBUG Processing 512/730 atomic regions from SNP 153466 to 154066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,880 DEBUG Processing 524/747 atomic regions from SNP 157001 to 157601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,940 DEBUG Processing 460/701 atomic regions from SNP 137714 to 138314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,026 DEBUG Processing 513/730 atomic regions from SNP 153766 to 154366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,031 DEBUG Processing 822/854 atomic regions from SNP 246426 to 247026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,108 DEBUG Processing 525/747 atomic regions from SNP 157301 to 157901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,162 DEBUG Processing 461/701 atomic regions from SNP 138014 to 138614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,256 DEBUG Processing 514/730 atomic regions from SNP 154066 to 154666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,275 DEBUG Processing 823/854 atomic regions from SNP 246726 to 247326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,350 DEBUG Processing 526/747 atomic regions from SNP 157601 to 158201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,386 DEBUG Processing 462/701 atomic regions from SNP 138314 to 138914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,489 DEBUG Processing 515/730 atomic regions from SNP 154366 to 154966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,523 DEBUG Processing 824/854 atomic regions from SNP 247026 to 247626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,608 DEBUG Processing 527/747 atomic regions from SNP 157901 to 158501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,633 DEBUG Processing 463/701 atomic regions from SNP 138614 to 139214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,727 DEBUG Processing 516/730 atomic regions from SNP 154666 to 155266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,775 DEBUG Processing 825/854 atomic regions from SNP 247326 to 247926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,856 DEBUG Processing 528/747 atomic regions from SNP 158201 to 158801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,866 DEBUG Processing 464/701 atomic regions from SNP 138914 to 139514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,967 DEBUG Processing 517/730 atomic regions from SNP 154966 to 155566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,026 DEBUG Processing 826/854 atomic regions from SNP 247626 to 248226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,103 DEBUG Processing 529/747 atomic regions from SNP 158501 to 159101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,115 DEBUG Processing 465/701 atomic regions from SNP 139214 to 139814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,221 DEBUG Processing 518/730 atomic regions from SNP 155266 to 155866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,249 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:53:02,280 DEBUG Processing 827/854 atomic regions from SNP 247926 to 248526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,358 DEBUG Processing 530/747 atomic regions from SNP 158801 to 159401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,361 DEBUG Processing 466/701 atomic regions from SNP 139514 to 140114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,486 DEBUG Processing 519/730 atomic regions from SNP 155566 to 156166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,531 DEBUG Processing 828/854 atomic regions from SNP 248226 to 248826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,600 DEBUG Processing 467/701 atomic regions from SNP 139814 to 140414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,619 DEBUG Processing 531/747 atomic regions from SNP 159101 to 159701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,748 DEBUG Processing 520/730 atomic regions from SNP 155866 to 156466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,777 DEBUG Processing 829/854 atomic regions from SNP 248526 to 249126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,841 DEBUG Processing 468/701 atomic regions from SNP 140114 to 140714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,868 DEBUG Processing 532/747 atomic regions from SNP 159401 to 160001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,999 DEBUG Processing 521/730 atomic regions from SNP 156166 to 156766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,021 DEBUG Processing 830/854 atomic regions from SNP 248826 to 249426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,076 DEBUG Processing 469/701 atomic regions from SNP 140414 to 141014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,112 DEBUG Processing 533/747 atomic regions from SNP 159701 to 160301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,257 DEBUG Processing 522/730 atomic regions from SNP 156466 to 157066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,268 DEBUG Processing 831/854 atomic regions from SNP 249126 to 249726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,306 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:53:03,307 DEBUG chr14: Signal quantile: 0.993. signal threshold: 11. Best RMSEA: 0.013 2025-01-31 09:53:03,315 DEBUG Processing 470/701 atomic regions from SNP 140714 to 141314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,359 DEBUG Processing 534/747 atomic regions from SNP 160001 to 160601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,508 DEBUG Processing 523/730 atomic regions from SNP 156766 to 157366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,516 DEBUG Processing 832/854 atomic regions from SNP 249426 to 250026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,555 DEBUG Processing 471/701 atomic regions from SNP 141014 to 141614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,619 DEBUG Processing 535/747 atomic regions from SNP 160301 to 160901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,763 DEBUG Processing 833/854 atomic regions from SNP 249726 to 250326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,773 DEBUG Processing 524/730 atomic regions from SNP 157066 to 157666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,790 DEBUG Processing 472/701 atomic regions from SNP 141314 to 141914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,870 DEBUG Processing 536/747 atomic regions from SNP 160601 to 161201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,013 DEBUG Processing 834/854 atomic regions from SNP 250026 to 250626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,029 DEBUG Processing 473/701 atomic regions from SNP 141614 to 142214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,045 DEBUG Processing 525/730 atomic regions from SNP 157366 to 157966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,120 DEBUG Processing 537/747 atomic regions from SNP 160901 to 161501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,274 DEBUG Processing 835/854 atomic regions from SNP 250326 to 250926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,274 DEBUG Processing 474/701 atomic regions from SNP 141914 to 142514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,311 DEBUG Processing 526/730 atomic regions from SNP 157666 to 158266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,363 DEBUG Processing 538/747 atomic regions from SNP 161201 to 161801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,515 DEBUG Processing 475/701 atomic regions from SNP 142214 to 142814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,522 DEBUG Processing 836/854 atomic regions from SNP 250626 to 251226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,581 DEBUG Processing 527/730 atomic regions from SNP 157966 to 158566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,607 DEBUG Processing 539/747 atomic regions from SNP 161501 to 162101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,756 DEBUG Processing 476/701 atomic regions from SNP 142514 to 143114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,776 DEBUG Processing 837/854 atomic regions from SNP 250926 to 251526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,843 DEBUG Processing 528/730 atomic regions from SNP 158266 to 158866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,853 DEBUG Processing 540/747 atomic regions from SNP 161801 to 162401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,997 DEBUG Processing 477/701 atomic regions from SNP 142814 to 143414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,052 DEBUG Processing 838/854 atomic regions from SNP 251226 to 251826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,098 DEBUG Processing 541/747 atomic regions from SNP 162101 to 162701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,101 DEBUG Processing 529/730 atomic regions from SNP 158566 to 159166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,227 DEBUG Processing 478/701 atomic regions from SNP 143114 to 143714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,320 DEBUG Processing 839/854 atomic regions from SNP 251526 to 252126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,363 DEBUG Processing 542/747 atomic regions from SNP 162401 to 163001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,370 DEBUG Processing 530/730 atomic regions from SNP 158866 to 159466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,474 DEBUG Processing 479/701 atomic regions from SNP 143414 to 144014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,600 DEBUG Processing 840/854 atomic regions from SNP 251826 to 252426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,612 DEBUG Processing 543/747 atomic regions from SNP 162701 to 163301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,627 DEBUG Processing 531/730 atomic regions from SNP 159166 to 159766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,705 DEBUG chr14 total SNP count: 200234 2025-01-31 09:53:05,705 DEBUG chr14 length: 124902244 2025-01-31 09:53:05,705 DEBUG ----------------------------------------- 2025-01-31 09:53:05,705 INFO Processing SNPs in chr14 2025-01-31 09:53:05,759 DEBUG Processing 480/701 atomic regions from SNP 143714 to 144314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,859 DEBUG Processing 841/854 atomic regions from SNP 252126 to 252726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,861 DEBUG Processing 544/747 atomic regions from SNP 163001 to 163601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,871 DEBUG Processing 532/730 atomic regions from SNP 159466 to 160066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,994 DEBUG Processing 481/701 atomic regions from SNP 144014 to 144614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,037 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 22), (22, 160), (160, 200234)] 2025-01-31 09:53:06,111 DEBUG Processing 545/747 atomic regions from SNP 163301 to 163901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,123 DEBUG Processing 533/730 atomic regions from SNP 159766 to 160366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,124 DEBUG Processing 842/854 atomic regions from SNP 252426 to 253026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,127 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:06,145 DEBUG Segmenting atomic regions: 2025-01-31 09:53:06,236 DEBUG Processing 1/1 atomic regions from SNP 0 to 137 for chr14 (subchromosome 2 of 3). 2025-01-31 09:53:06,243 DEBUG Unique SNPs positions in subchromosome 2: 138 2025-01-31 09:53:06,244 DEBUG Subchromosome time: 0.11637743399478495, subchromosome SNPs: 138 2025-01-31 09:53:06,245 DEBUG Processing 482/701 atomic regions from SNP 144314 to 144914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,298 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:06,360 DEBUG Processing 546/747 atomic regions from SNP 163601 to 164201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,370 DEBUG Processing 534/730 atomic regions from SNP 160066 to 160666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,387 DEBUG Processing 843/854 atomic regions from SNP 252726 to 253326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,513 DEBUG Processing 483/701 atomic regions from SNP 144614 to 145214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,627 DEBUG Processing 547/747 atomic regions from SNP 163901 to 164501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,634 DEBUG Processing 535/730 atomic regions from SNP 160366 to 160966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,659 DEBUG Processing 844/854 atomic regions from SNP 253026 to 253626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,768 DEBUG Processing 484/701 atomic regions from SNP 144914 to 145514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,880 DEBUG Processing 536/730 atomic regions from SNP 160666 to 161266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,888 DEBUG Processing 548/747 atomic regions from SNP 164201 to 164801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,918 DEBUG Processing 845/854 atomic regions from SNP 253326 to 253926 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,020 DEBUG Processing 485/701 atomic regions from SNP 145214 to 145814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,126 DEBUG Processing 537/730 atomic regions from SNP 160966 to 161566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,148 DEBUG Processing 549/747 atomic regions from SNP 164501 to 165101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,182 DEBUG Processing 846/854 atomic regions from SNP 253626 to 254226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,288 DEBUG Processing 486/701 atomic regions from SNP 145514 to 146114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,376 DEBUG Processing 538/730 atomic regions from SNP 161266 to 161866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,400 DEBUG Processing 550/747 atomic regions from SNP 164801 to 165401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,447 DEBUG Processing 847/854 atomic regions from SNP 253926 to 254526 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,535 DEBUG Processing 487/701 atomic regions from SNP 145814 to 146414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,630 DEBUG Processing 539/730 atomic regions from SNP 161566 to 162166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,662 DEBUG Processing 551/747 atomic regions from SNP 165101 to 165701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,719 DEBUG Processing 848/854 atomic regions from SNP 254226 to 254826 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,782 DEBUG Processing 488/701 atomic regions from SNP 146114 to 146714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,871 DEBUG Processing 540/730 atomic regions from SNP 161866 to 162466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,907 DEBUG Processing 552/747 atomic regions from SNP 165401 to 166001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,988 DEBUG Processing 849/854 atomic regions from SNP 254526 to 255126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,024 DEBUG Processing 489/701 atomic regions from SNP 146414 to 147014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,107 DEBUG Processing 541/730 atomic regions from SNP 162166 to 162766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,145 DEBUG Processing 553/747 atomic regions from SNP 165701 to 166301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,244 DEBUG Processing 850/854 atomic regions from SNP 254826 to 255426 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,281 DEBUG Processing 490/701 atomic regions from SNP 146714 to 147314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,344 DEBUG Processing 542/730 atomic regions from SNP 162466 to 163066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,388 DEBUG Processing 554/747 atomic regions from SNP 166001 to 166601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,498 DEBUG Processing 851/854 atomic regions from SNP 255126 to 255726 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,550 DEBUG Processing 491/701 atomic regions from SNP 147014 to 147614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,592 DEBUG Processing 543/730 atomic regions from SNP 162766 to 163366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,633 DEBUG Processing 555/747 atomic regions from SNP 166301 to 166901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,777 DEBUG Processing 852/854 atomic regions from SNP 255426 to 256026 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,814 DEBUG Processing 492/701 atomic regions from SNP 147314 to 147914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,833 DEBUG Processing 544/730 atomic regions from SNP 163066 to 163666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,878 DEBUG Processing 556/747 atomic regions from SNP 166601 to 167201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,048 DEBUG Processing 853/854 atomic regions from SNP 255726 to 256326 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,069 DEBUG Processing 493/701 atomic regions from SNP 147614 to 148214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,094 DEBUG Processing 545/730 atomic regions from SNP 163366 to 163966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,127 DEBUG Processing 557/747 atomic regions from SNP 166901 to 167501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,332 DEBUG Processing 494/701 atomic regions from SNP 147914 to 148514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,338 DEBUG Processing 854/854 atomic regions from SNP 256026 to 256626 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,372 DEBUG Processing 546/730 atomic regions from SNP 163666 to 164266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,401 DEBUG Processing 558/747 atomic regions from SNP 167201 to 167801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,492 DEBUG Unique SNPs positions in subchromosome 1: 256627 2025-01-31 09:53:09,587 DEBUG Processing 495/701 atomic regions from SNP 148214 to 148814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,629 DEBUG Processing 547/730 atomic regions from SNP 163966 to 164566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,662 DEBUG Processing 559/747 atomic regions from SNP 167501 to 168101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,829 DEBUG Processing 496/701 atomic regions from SNP 148514 to 149114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,873 DEBUG Processing 548/730 atomic regions from SNP 164266 to 164866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,909 DEBUG Processing 560/747 atomic regions from SNP 167801 to 168401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,064 DEBUG Processing 497/701 atomic regions from SNP 148814 to 149414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,115 DEBUG Processing 549/730 atomic regions from SNP 164566 to 165166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,144 DEBUG Processing 561/747 atomic regions from SNP 168101 to 168701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,296 DEBUG Processing 498/701 atomic regions from SNP 149114 to 149714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,358 DEBUG Processing 550/730 atomic regions from SNP 164866 to 165466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,413 DEBUG Processing 562/747 atomic regions from SNP 168401 to 169001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,531 DEBUG Processing 499/701 atomic regions from SNP 149414 to 150014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,620 DEBUG Processing 551/730 atomic regions from SNP 165166 to 165766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,681 DEBUG Processing 563/747 atomic regions from SNP 168701 to 169301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,777 DEBUG Processing 500/701 atomic regions from SNP 149714 to 150314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,866 DEBUG Processing 552/730 atomic regions from SNP 165466 to 166066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,931 DEBUG Processing 564/747 atomic regions from SNP 169001 to 169601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,023 DEBUG Processing 501/701 atomic regions from SNP 150014 to 150614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,113 DEBUG Processing 553/730 atomic regions from SNP 165766 to 166366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,182 DEBUG Processing 565/747 atomic regions from SNP 169301 to 169901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,280 DEBUG Processing 502/701 atomic regions from SNP 150314 to 150914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,360 DEBUG Processing 554/730 atomic regions from SNP 166066 to 166666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,429 DEBUG Processing 566/747 atomic regions from SNP 169601 to 170201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,524 DEBUG Processing 503/701 atomic regions from SNP 150614 to 151214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,602 DEBUG Processing 555/730 atomic regions from SNP 166366 to 166966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,666 DEBUG Processing 567/747 atomic regions from SNP 169901 to 170501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,759 DEBUG Processing 504/701 atomic regions from SNP 150914 to 151514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,835 DEBUG Processing 556/730 atomic regions from SNP 166666 to 167266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,897 DEBUG Processing 568/747 atomic regions from SNP 170201 to 170801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,992 DEBUG Processing 505/701 atomic regions from SNP 151214 to 151814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,064 DEBUG Processing 557/730 atomic regions from SNP 166966 to 167566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,128 DEBUG Processing 569/747 atomic regions from SNP 170501 to 171101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,227 DEBUG Processing 506/701 atomic regions from SNP 151514 to 152114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,293 DEBUG Processing 558/730 atomic regions from SNP 167266 to 167866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,360 DEBUG Processing 570/747 atomic regions from SNP 170801 to 171401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,455 DEBUG Processing 507/701 atomic regions from SNP 151814 to 152414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,519 DEBUG Processing 559/730 atomic regions from SNP 167566 to 168166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,590 DEBUG Processing 571/747 atomic regions from SNP 171101 to 171701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,682 DEBUG Processing 508/701 atomic regions from SNP 152114 to 152714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,750 DEBUG Processing 560/730 atomic regions from SNP 167866 to 168466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,824 DEBUG Processing 572/747 atomic regions from SNP 171401 to 172001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,914 DEBUG Processing 509/701 atomic regions from SNP 152414 to 153014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,980 DEBUG Processing 561/730 atomic regions from SNP 168166 to 168766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,051 DEBUG Processing 573/747 atomic regions from SNP 171701 to 172301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,141 DEBUG Processing 510/701 atomic regions from SNP 152714 to 153314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,209 DEBUG Processing 562/730 atomic regions from SNP 168466 to 169066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,279 DEBUG Processing 574/747 atomic regions from SNP 172001 to 172601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,367 DEBUG Processing 511/701 atomic regions from SNP 153014 to 153614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,431 DEBUG Processing 563/730 atomic regions from SNP 168766 to 169366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,508 DEBUG Processing 575/747 atomic regions from SNP 172301 to 172901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,601 DEBUG Processing 512/701 atomic regions from SNP 153314 to 153914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,662 DEBUG Processing 564/730 atomic regions from SNP 169066 to 169666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,738 DEBUG Processing 576/747 atomic regions from SNP 172601 to 173201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,833 DEBUG Processing 513/701 atomic regions from SNP 153614 to 154214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,894 DEBUG Processing 565/730 atomic regions from SNP 169366 to 169966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,969 DEBUG Processing 577/747 atomic regions from SNP 172901 to 173501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,061 DEBUG Processing 514/701 atomic regions from SNP 153914 to 154514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,128 DEBUG Processing 566/730 atomic regions from SNP 169666 to 170266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,202 DEBUG Processing 578/747 atomic regions from SNP 173201 to 173801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,294 DEBUG Processing 515/701 atomic regions from SNP 154214 to 154814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,367 DEBUG Processing 567/730 atomic regions from SNP 169966 to 170566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,441 DEBUG Processing 579/747 atomic regions from SNP 173501 to 174101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,537 DEBUG Processing 516/701 atomic regions from SNP 154514 to 155114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,609 DEBUG Processing 568/730 atomic regions from SNP 170266 to 170866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,680 DEBUG Processing 580/747 atomic regions from SNP 173801 to 174401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,772 DEBUG Processing 517/701 atomic regions from SNP 154814 to 155414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,844 DEBUG Processing 569/730 atomic regions from SNP 170566 to 171166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,915 DEBUG Processing 581/747 atomic regions from SNP 174101 to 174701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,006 DEBUG Processing 518/701 atomic regions from SNP 155114 to 155714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,082 DEBUG Processing 570/730 atomic regions from SNP 170866 to 171466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,151 DEBUG Processing 582/747 atomic regions from SNP 174401 to 175001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,258 DEBUG Processing 519/701 atomic regions from SNP 155414 to 156014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,333 DEBUG Processing 571/730 atomic regions from SNP 171166 to 171766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,387 DEBUG Processing 583/747 atomic regions from SNP 174701 to 175301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,493 DEBUG Processing 520/701 atomic regions from SNP 155714 to 156314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,570 DEBUG Processing 572/730 atomic regions from SNP 171466 to 172066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,625 DEBUG Processing 584/747 atomic regions from SNP 175001 to 175601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,726 DEBUG Processing 521/701 atomic regions from SNP 156014 to 156614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,810 DEBUG Processing 573/730 atomic regions from SNP 171766 to 172366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,865 DEBUG Processing 585/747 atomic regions from SNP 175301 to 175901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,985 DEBUG Processing 522/701 atomic regions from SNP 156314 to 156914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,054 DEBUG Processing 574/730 atomic regions from SNP 172066 to 172666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,109 DEBUG Processing 586/747 atomic regions from SNP 175601 to 176201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,248 DEBUG Processing 523/701 atomic regions from SNP 156614 to 157214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,293 DEBUG Processing 575/730 atomic regions from SNP 172366 to 172966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,352 DEBUG Processing 587/747 atomic regions from SNP 175901 to 176501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,520 DEBUG Processing 524/701 atomic regions from SNP 156914 to 157514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,537 DEBUG Processing 576/730 atomic regions from SNP 172666 to 173266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,590 DEBUG Processing 588/747 atomic regions from SNP 176201 to 176801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,774 DEBUG Processing 525/701 atomic regions from SNP 157214 to 157814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,781 DEBUG Processing 577/730 atomic regions from SNP 172966 to 173566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,833 DEBUG Processing 589/747 atomic regions from SNP 176501 to 177101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,018 DEBUG Processing 526/701 atomic regions from SNP 157514 to 158114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,026 DEBUG Processing 578/730 atomic regions from SNP 173266 to 173866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,074 DEBUG Processing 590/747 atomic regions from SNP 176801 to 177401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,269 DEBUG Processing 579/730 atomic regions from SNP 173566 to 174166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,269 DEBUG Processing 527/701 atomic regions from SNP 157814 to 158414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,325 DEBUG Processing 591/747 atomic regions from SNP 177101 to 177701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,513 DEBUG Processing 528/701 atomic regions from SNP 158114 to 158714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,520 DEBUG Processing 580/730 atomic regions from SNP 173866 to 174466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,567 DEBUG Processing 592/747 atomic regions from SNP 177401 to 178001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,749 DEBUG Processing 529/701 atomic regions from SNP 158414 to 159014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,782 DEBUG Processing 581/730 atomic regions from SNP 174166 to 174766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,807 DEBUG Processing 593/747 atomic regions from SNP 177701 to 178301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,987 DEBUG Processing 530/701 atomic regions from SNP 158714 to 159314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,021 DEBUG Processing 582/730 atomic regions from SNP 174466 to 175066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,051 DEBUG Processing 594/747 atomic regions from SNP 178001 to 178601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,225 DEBUG Processing 531/701 atomic regions from SNP 159014 to 159614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,263 DEBUG Processing 583/730 atomic regions from SNP 174766 to 175366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,298 DEBUG Processing 595/747 atomic regions from SNP 178301 to 178901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,481 DEBUG Processing 532/701 atomic regions from SNP 159314 to 159914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,541 DEBUG Processing 584/730 atomic regions from SNP 175066 to 175666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,559 DEBUG Processing 596/747 atomic regions from SNP 178601 to 179201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,724 DEBUG Processing 533/701 atomic regions from SNP 159614 to 160214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,805 DEBUG Processing 597/747 atomic regions from SNP 178901 to 179501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,821 DEBUG Processing 585/730 atomic regions from SNP 175366 to 175966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,968 DEBUG Processing 534/701 atomic regions from SNP 159914 to 160514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,048 DEBUG Processing 598/747 atomic regions from SNP 179201 to 179801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,109 DEBUG Processing 586/730 atomic regions from SNP 175666 to 176266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,214 DEBUG Processing 535/701 atomic regions from SNP 160214 to 160814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,292 DEBUG Processing 599/747 atomic regions from SNP 179501 to 180101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,385 DEBUG Processing 587/730 atomic regions from SNP 175966 to 176566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,439 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:53:19,441 DEBUG chr9: Signal quantile: 0.988. signal threshold: 12. Best RMSEA: 0.009 2025-01-31 09:53:19,462 DEBUG Processing 536/701 atomic regions from SNP 160514 to 161114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,532 DEBUG Processing 600/747 atomic regions from SNP 179801 to 180401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,665 DEBUG Processing 588/730 atomic regions from SNP 176266 to 176866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,706 DEBUG Processing 537/701 atomic regions from SNP 160814 to 161414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,779 DEBUG Processing 601/747 atomic regions from SNP 180101 to 180701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,935 DEBUG Processing 589/730 atomic regions from SNP 176566 to 177166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,944 DEBUG Processing 538/701 atomic regions from SNP 161114 to 161714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,021 DEBUG Processing 602/747 atomic regions from SNP 180401 to 181001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,204 DEBUG Processing 539/701 atomic regions from SNP 161414 to 162014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,210 DEBUG Processing 590/730 atomic regions from SNP 176866 to 177466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,264 DEBUG Processing 603/747 atomic regions from SNP 180701 to 181301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,443 DEBUG Processing 540/701 atomic regions from SNP 161714 to 162314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,467 DEBUG Processing 591/730 atomic regions from SNP 177166 to 177766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,511 DEBUG Processing 604/747 atomic regions from SNP 181001 to 181601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,676 DEBUG Processing 541/701 atomic regions from SNP 162014 to 162614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,716 DEBUG Processing 592/730 atomic regions from SNP 177466 to 178066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,759 DEBUG Processing 605/747 atomic regions from SNP 181301 to 181901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,921 DEBUG Processing 542/701 atomic regions from SNP 162314 to 162914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,964 DEBUG Processing 593/730 atomic regions from SNP 177766 to 178366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,011 DEBUG Processing 606/747 atomic regions from SNP 181601 to 182201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,152 DEBUG Processing 543/701 atomic regions from SNP 162614 to 163214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,211 DEBUG Processing 594/730 atomic regions from SNP 178066 to 178666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,255 DEBUG Processing 607/747 atomic regions from SNP 181901 to 182501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,377 DEBUG Processing 544/701 atomic regions from SNP 162914 to 163514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,471 DEBUG Processing 595/730 atomic regions from SNP 178366 to 178966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,495 DEBUG Processing 608/747 atomic regions from SNP 182201 to 182801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,606 DEBUG Processing 545/701 atomic regions from SNP 163214 to 163814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,737 DEBUG Processing 609/747 atomic regions from SNP 182501 to 183101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,741 DEBUG Processing 596/730 atomic regions from SNP 178666 to 179266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,821 DEBUG chr9 total SNP count: 217427 2025-01-31 09:53:21,821 DEBUG chr9 length: 124595110 2025-01-31 09:53:21,821 DEBUG ----------------------------------------- 2025-01-31 09:53:21,821 INFO Processing SNPs in chr9 2025-01-31 09:53:21,839 DEBUG Processing 546/701 atomic regions from SNP 163514 to 164114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,977 DEBUG Processing 610/747 atomic regions from SNP 182801 to 183401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,006 DEBUG Processing 597/730 atomic regions from SNP 178966 to 179566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,042 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217427)] 2025-01-31 09:53:22,067 DEBUG Processing 547/701 atomic regions from SNP 163814 to 164414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,194 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:22,215 DEBUG Processing 611/747 atomic regions from SNP 183101 to 183701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,272 DEBUG Processing 598/730 atomic regions from SNP 179266 to 179866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,300 DEBUG Processing 548/701 atomic regions from SNP 164114 to 164714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,452 DEBUG Processing 612/747 atomic regions from SNP 183401 to 184001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,522 DEBUG Processing 599/730 atomic regions from SNP 179566 to 180166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,534 DEBUG Processing 549/701 atomic regions from SNP 164414 to 165014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,690 DEBUG Processing 613/747 atomic regions from SNP 183701 to 184301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,759 DEBUG Processing 600/730 atomic regions from SNP 179866 to 180466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,769 DEBUG Processing 550/701 atomic regions from SNP 164714 to 165314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,924 DEBUG Processing 614/747 atomic regions from SNP 184001 to 184601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,003 DEBUG Processing 601/730 atomic regions from SNP 180166 to 180766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,023 DEBUG Processing 551/701 atomic regions from SNP 165014 to 165614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,162 DEBUG Processing 615/747 atomic regions from SNP 184301 to 184901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,241 DEBUG Processing 602/730 atomic regions from SNP 180466 to 181066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,294 DEBUG Processing 552/701 atomic regions from SNP 165314 to 165914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,393 DEBUG Processing 616/747 atomic regions from SNP 184601 to 185201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,469 DEBUG Processing 603/730 atomic regions from SNP 180766 to 181366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,567 DEBUG Processing 553/701 atomic regions from SNP 165614 to 166214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,627 DEBUG Processing 617/747 atomic regions from SNP 184901 to 185501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,712 DEBUG Processing 604/730 atomic regions from SNP 181066 to 181666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,814 DEBUG Processing 554/701 atomic regions from SNP 165914 to 166514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,868 DEBUG Processing 618/747 atomic regions from SNP 185201 to 185801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,942 DEBUG Processing 605/730 atomic regions from SNP 181366 to 181966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,060 DEBUG Processing 555/701 atomic regions from SNP 166214 to 166814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,111 DEBUG Processing 619/747 atomic regions from SNP 185501 to 186101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,172 DEBUG Processing 606/730 atomic regions from SNP 181666 to 182266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,294 DEBUG Processing 556/701 atomic regions from SNP 166514 to 167114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,348 DEBUG Processing 620/747 atomic regions from SNP 185801 to 186401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,404 DEBUG Processing 607/730 atomic regions from SNP 181966 to 182566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,529 DEBUG Processing 557/701 atomic regions from SNP 166814 to 167414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,587 DEBUG Processing 621/747 atomic regions from SNP 186101 to 186701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,645 DEBUG Processing 608/730 atomic regions from SNP 182266 to 182866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,776 DEBUG Processing 558/701 atomic regions from SNP 167114 to 167714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,842 DEBUG Processing 622/747 atomic regions from SNP 186401 to 187001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,895 DEBUG Processing 609/730 atomic regions from SNP 182566 to 183166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,038 DEBUG Processing 559/701 atomic regions from SNP 167414 to 168014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,080 DEBUG Processing 623/747 atomic regions from SNP 186701 to 187301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,130 DEBUG Processing 610/730 atomic regions from SNP 182866 to 183466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,293 DEBUG Processing 560/701 atomic regions from SNP 167714 to 168314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,320 DEBUG Processing 624/747 atomic regions from SNP 187001 to 187601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,370 DEBUG Processing 611/730 atomic regions from SNP 183166 to 183766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,535 DEBUG Processing 561/701 atomic regions from SNP 168014 to 168614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,567 DEBUG Processing 625/747 atomic regions from SNP 187301 to 187901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,641 DEBUG Processing 612/730 atomic regions from SNP 183466 to 184066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,777 DEBUG Processing 562/701 atomic regions from SNP 168314 to 168914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,816 DEBUG Processing 626/747 atomic regions from SNP 187601 to 188201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,890 DEBUG Processing 613/730 atomic regions from SNP 183766 to 184366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,027 DEBUG Processing 563/701 atomic regions from SNP 168614 to 169214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,082 DEBUG Processing 627/747 atomic regions from SNP 187901 to 188501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,149 DEBUG Processing 614/730 atomic regions from SNP 184066 to 184666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,270 DEBUG Processing 564/701 atomic regions from SNP 168914 to 169514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,339 DEBUG Processing 628/747 atomic regions from SNP 188201 to 188801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,398 DEBUG Processing 615/730 atomic regions from SNP 184366 to 184966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,508 DEBUG Processing 565/701 atomic regions from SNP 169214 to 169814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,583 DEBUG Processing 629/747 atomic regions from SNP 188501 to 189101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,640 DEBUG Processing 616/730 atomic regions from SNP 184666 to 185266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,748 DEBUG Processing 566/701 atomic regions from SNP 169514 to 170114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,830 DEBUG Processing 630/747 atomic regions from SNP 188801 to 189401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,879 DEBUG Processing 617/730 atomic regions from SNP 184966 to 185566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,999 DEBUG Processing 567/701 atomic regions from SNP 169814 to 170414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,080 DEBUG Processing 631/747 atomic regions from SNP 189101 to 189701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,144 DEBUG Processing 618/730 atomic regions from SNP 185266 to 185866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,277 DEBUG Processing 568/701 atomic regions from SNP 170114 to 170714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,341 DEBUG Processing 632/747 atomic regions from SNP 189401 to 190001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,412 DEBUG Processing 619/730 atomic regions from SNP 185566 to 186166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,532 DEBUG Processing 569/701 atomic regions from SNP 170414 to 171014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,593 DEBUG Processing 633/747 atomic regions from SNP 189701 to 190301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,688 DEBUG Processing 620/730 atomic regions from SNP 185866 to 186466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,782 DEBUG Processing 570/701 atomic regions from SNP 170714 to 171314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,848 DEBUG Processing 634/747 atomic regions from SNP 190001 to 190601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,962 DEBUG Processing 621/730 atomic regions from SNP 186166 to 186766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,035 DEBUG Processing 571/701 atomic regions from SNP 171014 to 171614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,117 DEBUG Processing 635/747 atomic regions from SNP 190301 to 190901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,233 DEBUG Processing 622/730 atomic regions from SNP 186466 to 187066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,299 DEBUG Processing 572/701 atomic regions from SNP 171314 to 171914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,374 DEBUG Processing 636/747 atomic regions from SNP 190601 to 191201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,491 DEBUG Processing 623/730 atomic regions from SNP 186766 to 187366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,555 DEBUG Processing 573/701 atomic regions from SNP 171614 to 172214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,613 DEBUG Processing 637/747 atomic regions from SNP 190901 to 191501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,757 DEBUG Processing 624/730 atomic regions from SNP 187066 to 187666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,807 DEBUG Processing 574/701 atomic regions from SNP 171914 to 172514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,854 DEBUG Processing 638/747 atomic regions from SNP 191201 to 191801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,015 DEBUG Processing 625/730 atomic regions from SNP 187366 to 187966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,060 DEBUG Processing 575/701 atomic regions from SNP 172214 to 172814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,094 DEBUG Processing 639/747 atomic regions from SNP 191501 to 192101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,285 DEBUG Processing 626/730 atomic regions from SNP 187666 to 188266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,306 DEBUG Processing 576/701 atomic regions from SNP 172514 to 173114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,342 DEBUG Processing 640/747 atomic regions from SNP 191801 to 192401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,537 DEBUG Processing 627/730 atomic regions from SNP 187966 to 188566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,555 DEBUG Processing 577/701 atomic regions from SNP 172814 to 173414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,583 DEBUG Processing 641/747 atomic regions from SNP 192101 to 192701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,772 DEBUG Processing 628/730 atomic regions from SNP 188266 to 188866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,803 DEBUG Processing 578/701 atomic regions from SNP 173114 to 173714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,827 DEBUG Processing 642/747 atomic regions from SNP 192401 to 193001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,008 DEBUG Processing 629/730 atomic regions from SNP 188566 to 189166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,043 DEBUG Processing 579/701 atomic regions from SNP 173414 to 174014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,066 DEBUG Processing 643/747 atomic regions from SNP 192701 to 193301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,248 DEBUG Processing 630/730 atomic regions from SNP 188866 to 189466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,310 DEBUG Processing 580/701 atomic regions from SNP 173714 to 174314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,312 DEBUG Processing 644/747 atomic regions from SNP 193001 to 193601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,469 DEBUG Subchromosome time: 275.4114186071092, subchromosome SNPs: 256627 2025-01-31 09:53:30,470 DEBUG Estimated BADs: [1.35, 0.67, 2.69, 1.35, 4.04, 1.35, 0.45, 2.69, 1.35, 0.45, 2.69, 0.45, 4.04, 1.35, 0.34, 1.35, 6.73, 1.35, 4.04, 1.35, 0.45, 0.67, 5.38, 2.69, 0.67, 8.08, 2.69, 0.45, 1.35, 0.34, 1.35] SNP counts: [10328, 32674, 12751, 5105, 2402, 8052, 5336, 3402, 18250, 13027, 1697, 3949, 3554, 2694, 11451, 3671, 1082, 3004, 11775, 18810, 7213, 11779, 1417, 16682, 2056, 1663, 6695, 5911, 9949, 1744, 18504] SNP IDs counts: [10328, 32674, 12751, 5105, 2402, 8052, 5336, 3402, 18250, 13027, 1697, 3949, 3554, 2694, 11451, 3671, 1082, 3004, 11775, 18810, 7213, 11779, 1417, 16682, 2056, 1663, 6695, 5911, 9949, 1744, 18504] Critical gap: 664542bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.06Mbp, 28.39Mbp, 35.24Mbp, 38.11Mbp, 39.37Mbp, 44.04Mbp, 47.18Mbp, 49.19Mbp, 59.31Mbp, 67.03Mbp, 68.03Mbp, 70.71Mbp, 72.59Mbp, 74.11Mbp, 80.89Mbp, 83.00Mbp, 83.56Mbp, 85.19Mbp, 91.62Mbp, 101.82Mbp, 106.02Mbp, 112.86Mbp, 113.60Mbp, 122.84Mbp, 124.36Mbp, 125.27Mbp, 128.85Mbp, 132.71Mbp, 138.33Mbp, 139.33Mbp, 149.74Mbp] 2025-01-31 09:53:30,470 DEBUG chr6 time: 275.4125159300165 s 2025-01-31 09:53:30,502 DEBUG Processing 631/730 atomic regions from SNP 189166 to 189766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,564 DEBUG Processing 645/747 atomic regions from SNP 193301 to 193901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,589 DEBUG Processing 581/701 atomic regions from SNP 174014 to 174614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,647 DEBUG chr6: Fitting background model for 31 segments 2025-01-31 09:53:30,738 DEBUG Processing 632/730 atomic regions from SNP 189466 to 190066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,798 DEBUG Processing 646/747 atomic regions from SNP 193601 to 194201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,843 DEBUG Processing 582/701 atomic regions from SNP 174314 to 174914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,981 DEBUG Processing 633/730 atomic regions from SNP 189766 to 190366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,047 DEBUG Processing 647/747 atomic regions from SNP 193901 to 194501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,110 DEBUG Processing 583/701 atomic regions from SNP 174614 to 175214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,223 DEBUG Processing 634/730 atomic regions from SNP 190066 to 190666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,293 DEBUG Processing 648/747 atomic regions from SNP 194201 to 194801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,363 DEBUG Processing 584/701 atomic regions from SNP 174914 to 175514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,459 DEBUG Processing 635/730 atomic regions from SNP 190366 to 190966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,521 DEBUG Segmenting atomic regions: 2025-01-31 09:53:31,532 DEBUG Processing 649/747 atomic regions from SNP 194501 to 195101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,614 DEBUG Processing 1/665 atomic regions from SNP 0 to 601 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:31,622 DEBUG Processing 585/701 atomic regions from SNP 175214 to 175814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,690 DEBUG Processing 636/730 atomic regions from SNP 190666 to 191266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,772 DEBUG Processing 650/747 atomic regions from SNP 194801 to 195401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,842 DEBUG Processing 2/665 atomic regions from SNP 301 to 902 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:31,907 DEBUG Processing 586/701 atomic regions from SNP 175514 to 176114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,927 DEBUG Processing 637/730 atomic regions from SNP 190966 to 191566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,017 DEBUG Processing 651/747 atomic regions from SNP 195101 to 195701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,067 DEBUG Processing 3/665 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:32,165 DEBUG Processing 638/730 atomic regions from SNP 191266 to 191866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,191 DEBUG Processing 587/701 atomic regions from SNP 175814 to 176414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,258 DEBUG Processing 652/747 atomic regions from SNP 195401 to 196001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,295 DEBUG Processing 4/665 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:32,397 DEBUG Processing 639/730 atomic regions from SNP 191566 to 192166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,482 DEBUG Processing 588/701 atomic regions from SNP 176114 to 176714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,502 DEBUG Processing 653/747 atomic regions from SNP 195701 to 196301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,547 DEBUG Processing 5/665 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:32,640 DEBUG Processing 640/730 atomic regions from SNP 191866 to 192466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,748 DEBUG Processing 654/747 atomic regions from SNP 196001 to 196601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,770 DEBUG Processing 589/701 atomic regions from SNP 176414 to 177014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,788 DEBUG Processing 6/665 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:32,877 DEBUG Processing 641/730 atomic regions from SNP 192166 to 192766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,990 DEBUG Processing 655/747 atomic regions from SNP 196301 to 196901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,007 DEBUG Processing 7/665 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:33,046 DEBUG Processing 590/701 atomic regions from SNP 176714 to 177314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,110 DEBUG Processing 642/730 atomic regions from SNP 192466 to 193066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,224 DEBUG Processing 8/665 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:33,233 DEBUG Processing 656/747 atomic regions from SNP 196601 to 197201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,325 DEBUG Processing 591/701 atomic regions from SNP 177014 to 177614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,350 DEBUG Processing 643/730 atomic regions from SNP 192766 to 193366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,438 DEBUG Processing 9/665 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:33,475 DEBUG Processing 657/747 atomic regions from SNP 196901 to 197501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,590 DEBUG Processing 644/730 atomic regions from SNP 193066 to 193666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,605 DEBUG Processing 592/701 atomic regions from SNP 177314 to 177914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,658 DEBUG Processing 10/665 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:33,738 DEBUG Processing 658/747 atomic regions from SNP 197201 to 197801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,831 DEBUG Processing 645/730 atomic regions from SNP 193366 to 193966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,881 DEBUG Processing 11/665 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:33,885 DEBUG Processing 593/701 atomic regions from SNP 177614 to 178214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,979 DEBUG Processing 659/747 atomic regions from SNP 197501 to 198101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,067 DEBUG Processing 646/730 atomic regions from SNP 193666 to 194266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,107 DEBUG Processing 12/665 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:34,181 DEBUG Processing 594/701 atomic regions from SNP 177914 to 178514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,220 DEBUG Processing 660/747 atomic regions from SNP 197801 to 198401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,302 DEBUG Processing 647/730 atomic regions from SNP 193966 to 194566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,333 DEBUG Processing 13/665 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:34,460 DEBUG Processing 661/747 atomic regions from SNP 198101 to 198701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,460 DEBUG Processing 595/701 atomic regions from SNP 178214 to 178814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,540 DEBUG Processing 648/730 atomic regions from SNP 194266 to 194866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,563 DEBUG Processing 14/665 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:34,721 DEBUG Processing 662/747 atomic regions from SNP 198401 to 199001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,748 DEBUG Processing 596/701 atomic regions from SNP 178514 to 179114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,789 DEBUG Processing 15/665 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:34,799 DEBUG Processing 649/730 atomic regions from SNP 194566 to 195166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,977 DEBUG Processing 663/747 atomic regions from SNP 198701 to 199301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,001 DEBUG Processing 597/701 atomic regions from SNP 178814 to 179414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,018 DEBUG Processing 16/665 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:35,048 DEBUG Processing 650/730 atomic regions from SNP 194866 to 195466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,228 DEBUG Processing 664/747 atomic regions from SNP 199001 to 199601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,243 DEBUG Processing 17/665 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:35,266 DEBUG Processing 598/701 atomic regions from SNP 179114 to 179714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,292 DEBUG Processing 651/730 atomic regions from SNP 195166 to 195766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,467 DEBUG Processing 18/665 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:35,488 DEBUG Processing 665/747 atomic regions from SNP 199301 to 199901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,529 DEBUG Processing 599/701 atomic regions from SNP 179414 to 180014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,553 DEBUG Processing 652/730 atomic regions from SNP 195466 to 196066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,693 DEBUG Processing 19/665 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:35,736 DEBUG Processing 666/747 atomic regions from SNP 199601 to 200201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,790 DEBUG Processing 600/701 atomic regions from SNP 179714 to 180314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,802 DEBUG Processing 653/730 atomic regions from SNP 195766 to 196366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,909 DEBUG Processing 20/665 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:35,978 DEBUG Processing 667/747 atomic regions from SNP 199901 to 200501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,054 DEBUG Processing 654/730 atomic regions from SNP 196066 to 196666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,056 DEBUG Processing 601/701 atomic regions from SNP 180014 to 180614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,134 DEBUG Processing 21/665 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:36,248 DEBUG Processing 668/747 atomic regions from SNP 200201 to 200801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,302 DEBUG Processing 602/701 atomic regions from SNP 180314 to 180914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,327 DEBUG Processing 655/730 atomic regions from SNP 196366 to 196966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,366 DEBUG Processing 22/665 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:36,527 DEBUG Processing 669/747 atomic regions from SNP 200501 to 201101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,553 DEBUG Processing 603/701 atomic regions from SNP 180614 to 181214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,599 DEBUG Processing 23/665 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:36,621 DEBUG Processing 656/730 atomic regions from SNP 196666 to 197266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,779 DEBUG Processing 670/747 atomic regions from SNP 200801 to 201401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,796 DEBUG Processing 604/701 atomic regions from SNP 180914 to 181514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,823 DEBUG Processing 24/665 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:36,903 DEBUG Processing 657/730 atomic regions from SNP 196966 to 197566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,030 DEBUG Processing 671/747 atomic regions from SNP 201101 to 201701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,032 DEBUG Processing 605/701 atomic regions from SNP 181214 to 181814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,046 DEBUG Processing 25/665 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:37,178 DEBUG Processing 658/730 atomic regions from SNP 197266 to 197866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,267 DEBUG Processing 26/665 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:37,273 DEBUG Processing 606/701 atomic regions from SNP 181514 to 182114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,299 DEBUG Processing 672/747 atomic regions from SNP 201401 to 202001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,440 DEBUG Processing 659/730 atomic regions from SNP 197566 to 198166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,488 DEBUG Processing 27/665 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:37,510 DEBUG Processing 607/701 atomic regions from SNP 181814 to 182414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,572 DEBUG Processing 673/747 atomic regions from SNP 201701 to 202301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,693 DEBUG Processing 660/730 atomic regions from SNP 197866 to 198466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,707 DEBUG Processing 28/665 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:37,748 DEBUG Processing 608/701 atomic regions from SNP 182114 to 182714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,822 DEBUG Processing 674/747 atomic regions from SNP 202001 to 202601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,932 DEBUG Processing 29/665 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:37,950 DEBUG Processing 661/730 atomic regions from SNP 198166 to 198766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,987 DEBUG Processing 609/701 atomic regions from SNP 182414 to 183014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,070 DEBUG Processing 675/747 atomic regions from SNP 202301 to 202901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,156 DEBUG Processing 30/665 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:38,200 DEBUG Processing 662/730 atomic regions from SNP 198466 to 199066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,230 DEBUG Processing 610/701 atomic regions from SNP 182714 to 183314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,319 DEBUG Processing 676/747 atomic regions from SNP 202601 to 203201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,374 DEBUG Processing 31/665 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:38,449 DEBUG Processing 663/730 atomic regions from SNP 198766 to 199366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,473 DEBUG Processing 611/701 atomic regions from SNP 183014 to 183614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,563 DEBUG Processing 677/747 atomic regions from SNP 202901 to 203501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,595 DEBUG Processing 32/665 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:38,696 DEBUG Processing 664/730 atomic regions from SNP 199066 to 199666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,735 DEBUG Processing 612/701 atomic regions from SNP 183314 to 183914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,807 DEBUG Processing 678/747 atomic regions from SNP 203201 to 203801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,819 DEBUG Processing 33/665 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:38,942 DEBUG Processing 665/730 atomic regions from SNP 199366 to 199966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,001 DEBUG Processing 613/701 atomic regions from SNP 183614 to 184214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,036 DEBUG Processing 34/665 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:39,047 DEBUG Processing 679/747 atomic regions from SNP 203501 to 204101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,202 DEBUG Processing 666/730 atomic regions from SNP 199666 to 200266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,263 DEBUG Processing 35/665 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:39,267 DEBUG Processing 614/701 atomic regions from SNP 183914 to 184514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,318 DEBUG Processing 680/747 atomic regions from SNP 203801 to 204401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,458 DEBUG Processing 667/730 atomic regions from SNP 199966 to 200566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,495 DEBUG Processing 36/665 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:39,518 DEBUG Processing 615/701 atomic regions from SNP 184214 to 184814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,584 DEBUG Processing 681/747 atomic regions from SNP 204101 to 204701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,712 DEBUG Processing 668/730 atomic regions from SNP 200266 to 200866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,724 DEBUG Processing 37/665 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:39,765 DEBUG Processing 616/701 atomic regions from SNP 184514 to 185114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,831 DEBUG Processing 682/747 atomic regions from SNP 204401 to 205001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,945 DEBUG Processing 38/665 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:39,960 DEBUG Processing 669/730 atomic regions from SNP 200566 to 201166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,005 DEBUG Processing 617/701 atomic regions from SNP 184814 to 185414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,079 DEBUG Processing 683/747 atomic regions from SNP 204701 to 205301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,165 DEBUG Processing 39/665 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:40,222 DEBUG Processing 670/730 atomic regions from SNP 200866 to 201466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,239 DEBUG Processing 618/701 atomic regions from SNP 185114 to 185714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,323 DEBUG Processing 684/747 atomic regions from SNP 205001 to 205601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,394 DEBUG Processing 40/665 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:40,478 DEBUG Processing 619/701 atomic regions from SNP 185414 to 186014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,510 DEBUG Processing 671/730 atomic regions from SNP 201166 to 201766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,584 DEBUG Processing 685/747 atomic regions from SNP 205301 to 205901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,626 DEBUG Processing 41/665 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:40,722 DEBUG Processing 620/701 atomic regions from SNP 185714 to 186314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,805 DEBUG Processing 672/730 atomic regions from SNP 201466 to 202066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,838 DEBUG Processing 686/747 atomic regions from SNP 205601 to 206201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,853 DEBUG Processing 42/665 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:40,959 DEBUG Processing 621/701 atomic regions from SNP 186014 to 186614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,073 DEBUG Processing 43/665 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:41,089 DEBUG Processing 687/747 atomic regions from SNP 205901 to 206501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,097 DEBUG Processing 673/730 atomic regions from SNP 201766 to 202366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,195 DEBUG Processing 622/701 atomic regions from SNP 186314 to 186914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,293 DEBUG Processing 44/665 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:41,343 DEBUG Processing 688/747 atomic regions from SNP 206201 to 206801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,385 DEBUG Processing 674/730 atomic regions from SNP 202066 to 202666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,432 DEBUG Processing 623/701 atomic regions from SNP 186614 to 187214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,510 DEBUG Processing 45/665 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:41,592 DEBUG Processing 689/747 atomic regions from SNP 206501 to 207101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,672 DEBUG Processing 675/730 atomic regions from SNP 202366 to 202966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,682 DEBUG Processing 624/701 atomic regions from SNP 186914 to 187514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,731 DEBUG Processing 46/665 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:41,835 DEBUG Processing 690/747 atomic regions from SNP 206801 to 207401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,948 DEBUG Processing 625/701 atomic regions from SNP 187214 to 187814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,951 DEBUG Processing 47/665 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:41,955 DEBUG Processing 676/730 atomic regions from SNP 202666 to 203266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,077 DEBUG Processing 691/747 atomic regions from SNP 207101 to 207701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,174 DEBUG Processing 48/665 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:42,214 DEBUG Processing 626/701 atomic regions from SNP 187514 to 188114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,234 DEBUG Processing 677/730 atomic regions from SNP 202966 to 203566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,330 DEBUG Processing 692/747 atomic regions from SNP 207401 to 208001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,387 DEBUG Processing 49/665 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:42,456 DEBUG Processing 627/701 atomic regions from SNP 187814 to 188414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,511 DEBUG Processing 678/730 atomic regions from SNP 203266 to 203866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,578 DEBUG Processing 693/747 atomic regions from SNP 207701 to 208301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,606 DEBUG Processing 50/665 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:42,725 DEBUG Processing 628/701 atomic regions from SNP 188114 to 188714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,792 DEBUG Processing 679/730 atomic regions from SNP 203566 to 204166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,821 DEBUG Processing 694/747 atomic regions from SNP 208001 to 208601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,822 DEBUG Processing 51/665 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:42,967 DEBUG Processing 629/701 atomic regions from SNP 188414 to 189014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,055 DEBUG Processing 52/665 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:43,068 DEBUG Processing 680/730 atomic regions from SNP 203866 to 204466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,074 DEBUG Processing 695/747 atomic regions from SNP 208301 to 208901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,212 DEBUG Processing 630/701 atomic regions from SNP 188714 to 189314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,290 DEBUG Processing 53/665 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:43,325 DEBUG Processing 696/747 atomic regions from SNP 208601 to 209201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,334 DEBUG Processing 681/730 atomic regions from SNP 204166 to 204766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,476 DEBUG Processing 631/701 atomic regions from SNP 189014 to 189614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,507 DEBUG Processing 54/665 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:43,571 DEBUG Processing 697/747 atomic regions from SNP 208901 to 209501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,603 DEBUG Processing 682/730 atomic regions from SNP 204466 to 205066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,727 DEBUG Processing 55/665 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:43,733 DEBUG Processing 632/701 atomic regions from SNP 189314 to 189914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,816 DEBUG Processing 698/747 atomic regions from SNP 209201 to 209801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,857 DEBUG Processing 683/730 atomic regions from SNP 204766 to 205366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,941 DEBUG Processing 56/665 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:43,966 DEBUG Processing 633/701 atomic regions from SNP 189614 to 190214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,061 DEBUG Processing 699/747 atomic regions from SNP 209501 to 210101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,119 DEBUG Processing 684/730 atomic regions from SNP 205066 to 205666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,157 DEBUG Processing 57/665 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:44,201 DEBUG Processing 634/701 atomic regions from SNP 189914 to 190514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,307 DEBUG Processing 700/747 atomic regions from SNP 209801 to 210401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,372 DEBUG Processing 58/665 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:44,398 DEBUG Processing 685/730 atomic regions from SNP 205366 to 205966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,439 DEBUG Processing 635/701 atomic regions from SNP 190214 to 190814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,554 DEBUG Processing 701/747 atomic regions from SNP 210101 to 210701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,584 DEBUG Processing 59/665 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:44,668 DEBUG Processing 636/701 atomic regions from SNP 190514 to 191114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,683 DEBUG Processing 686/730 atomic regions from SNP 205666 to 206266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,787 DEBUG Processing 60/665 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:44,795 DEBUG Processing 702/747 atomic regions from SNP 210401 to 211001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,898 DEBUG Processing 637/701 atomic regions from SNP 190814 to 191414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,966 DEBUG Processing 687/730 atomic regions from SNP 205966 to 206566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,993 DEBUG Processing 61/665 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:45,050 DEBUG Processing 703/747 atomic regions from SNP 210701 to 211301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,131 DEBUG Processing 638/701 atomic regions from SNP 191114 to 191714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,211 DEBUG Processing 62/665 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:45,250 DEBUG Processing 688/730 atomic regions from SNP 206266 to 206866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,308 DEBUG Processing 704/747 atomic regions from SNP 211001 to 211601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,369 DEBUG Processing 639/701 atomic regions from SNP 191414 to 192014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,430 DEBUG Processing 63/665 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:45,519 DEBUG Processing 689/730 atomic regions from SNP 206566 to 207166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,564 DEBUG Processing 705/747 atomic regions from SNP 211301 to 211901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,598 DEBUG Processing 640/701 atomic regions from SNP 191714 to 192314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,670 DEBUG Processing 64/665 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:45,793 DEBUG Processing 690/730 atomic regions from SNP 206866 to 207466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,816 DEBUG Processing 706/747 atomic regions from SNP 211601 to 212201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,841 DEBUG Processing 641/701 atomic regions from SNP 192014 to 192614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,888 DEBUG Processing 65/665 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:46,064 DEBUG Processing 707/747 atomic regions from SNP 211901 to 212501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,071 DEBUG Processing 691/730 atomic regions from SNP 207166 to 207766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,082 DEBUG Processing 642/701 atomic regions from SNP 192314 to 192914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,111 DEBUG Processing 66/665 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:46,313 DEBUG Processing 708/747 atomic regions from SNP 212201 to 212801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,329 DEBUG Processing 643/701 atomic regions from SNP 192614 to 193214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,336 DEBUG Processing 67/665 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:46,356 DEBUG Processing 692/730 atomic regions from SNP 207466 to 208066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,558 DEBUG Processing 709/747 atomic regions from SNP 212501 to 213101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,560 DEBUG Processing 68/665 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:46,597 DEBUG Processing 644/701 atomic regions from SNP 192914 to 193514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,643 DEBUG Processing 693/730 atomic regions from SNP 207766 to 208366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,785 DEBUG Processing 69/665 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:46,806 DEBUG Processing 710/747 atomic regions from SNP 212801 to 213401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,838 DEBUG Processing 645/701 atomic regions from SNP 193214 to 193814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,928 DEBUG Processing 694/730 atomic regions from SNP 208066 to 208666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,005 DEBUG Processing 70/665 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:47,050 DEBUG Processing 711/747 atomic regions from SNP 213101 to 213701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,072 DEBUG Processing 646/701 atomic regions from SNP 193514 to 194114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,206 DEBUG Processing 695/730 atomic regions from SNP 208366 to 208966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,235 DEBUG Processing 71/665 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:47,288 DEBUG Processing 712/747 atomic regions from SNP 213401 to 214001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,294 DEBUG Processing 647/701 atomic regions from SNP 193814 to 194414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,474 DEBUG Processing 72/665 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:47,485 DEBUG Processing 696/730 atomic regions from SNP 208666 to 209266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,526 DEBUG Processing 648/701 atomic regions from SNP 194114 to 194714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,535 DEBUG Processing 713/747 atomic regions from SNP 213701 to 214301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,715 DEBUG Processing 73/665 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:47,748 DEBUG Processing 649/701 atomic regions from SNP 194414 to 195014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,780 DEBUG Processing 697/730 atomic regions from SNP 208966 to 209566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,782 DEBUG Processing 714/747 atomic regions from SNP 214001 to 214601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,954 DEBUG Processing 74/665 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:47,969 DEBUG Processing 650/701 atomic regions from SNP 194714 to 195314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,031 DEBUG Processing 715/747 atomic regions from SNP 214301 to 214901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,059 DEBUG Processing 698/730 atomic regions from SNP 209266 to 209866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,193 DEBUG Processing 75/665 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:48,194 DEBUG Processing 651/701 atomic regions from SNP 195014 to 195614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,279 DEBUG Processing 716/747 atomic regions from SNP 214601 to 215201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,345 DEBUG Processing 699/730 atomic regions from SNP 209566 to 210166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,424 DEBUG Processing 652/701 atomic regions from SNP 195314 to 195914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,439 DEBUG Processing 76/665 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:48,529 DEBUG Processing 717/747 atomic regions from SNP 214901 to 215501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,614 DEBUG Processing 700/730 atomic regions from SNP 209866 to 210466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,651 DEBUG Processing 653/701 atomic regions from SNP 195614 to 196214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,689 DEBUG Processing 77/665 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:48,772 DEBUG Processing 718/747 atomic regions from SNP 215201 to 215801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,878 DEBUG Processing 654/701 atomic regions from SNP 195914 to 196514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,879 DEBUG Processing 701/730 atomic regions from SNP 210166 to 210766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,933 DEBUG Processing 78/665 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:49,016 DEBUG Processing 719/747 atomic regions from SNP 215501 to 216101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,099 DEBUG Processing 655/701 atomic regions from SNP 196214 to 196814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,139 DEBUG Processing 702/730 atomic regions from SNP 210466 to 211066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,179 DEBUG Processing 79/665 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:49,254 DEBUG Processing 720/747 atomic regions from SNP 215801 to 216401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,326 DEBUG Processing 656/701 atomic regions from SNP 196514 to 197114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,398 DEBUG Processing 703/730 atomic regions from SNP 210766 to 211366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,425 DEBUG Processing 80/665 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:49,494 DEBUG Processing 721/747 atomic regions from SNP 216101 to 216701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,573 DEBUG Processing 657/701 atomic regions from SNP 196814 to 197414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,648 DEBUG Processing 81/665 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:49,651 DEBUG Processing 704/730 atomic regions from SNP 211066 to 211666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,735 DEBUG Processing 722/747 atomic regions from SNP 216401 to 217001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,798 DEBUG Processing 658/701 atomic regions from SNP 197114 to 197714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,884 DEBUG Segmenting atomic regions: 2025-01-31 09:53:49,890 DEBUG Processing 82/665 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:49,928 DEBUG Processing 705/730 atomic regions from SNP 211366 to 211966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,979 DEBUG Processing 723/747 atomic regions from SNP 216701 to 217301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,983 DEBUG Processing 1/723 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,031 DEBUG Processing 659/701 atomic regions from SNP 197414 to 198014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,134 DEBUG Processing 83/665 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:50,184 DEBUG Processing 706/730 atomic regions from SNP 211666 to 212266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,214 DEBUG Processing 2/723 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,222 DEBUG Processing 724/747 atomic regions from SNP 217001 to 217601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,264 DEBUG Processing 660/701 atomic regions from SNP 197714 to 198314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,375 DEBUG Processing 84/665 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:50,434 DEBUG Processing 707/730 atomic regions from SNP 211966 to 212566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,453 DEBUG Processing 3/723 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,471 DEBUG Processing 725/747 atomic regions from SNP 217301 to 217901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,505 DEBUG Processing 661/701 atomic regions from SNP 198014 to 198614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,614 DEBUG Processing 85/665 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:50,688 DEBUG Processing 708/730 atomic regions from SNP 212266 to 212866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,695 DEBUG Processing 4/723 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,721 DEBUG Processing 726/747 atomic regions from SNP 217601 to 218201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,747 DEBUG Processing 662/701 atomic regions from SNP 198314 to 198914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,851 DEBUG Processing 86/665 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:50,946 DEBUG Processing 5/723 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,949 DEBUG Processing 709/730 atomic regions from SNP 212566 to 213166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,985 DEBUG Processing 727/747 atomic regions from SNP 217901 to 218501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,002 DEBUG Processing 663/701 atomic regions from SNP 198614 to 199214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,065 DEBUG Processing 87/665 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:51,186 DEBUG Processing 6/723 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,202 DEBUG Processing 710/730 atomic regions from SNP 212866 to 213466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,265 DEBUG Processing 664/701 atomic regions from SNP 198914 to 199514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,272 DEBUG Processing 728/747 atomic regions from SNP 218201 to 218801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,283 DEBUG Processing 88/665 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:51,424 DEBUG Processing 7/723 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,459 DEBUG Processing 711/730 atomic regions from SNP 213166 to 213766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,505 DEBUG Processing 89/665 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:51,518 DEBUG Processing 665/701 atomic regions from SNP 199214 to 199814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,561 DEBUG Processing 729/747 atomic regions from SNP 218501 to 219101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,654 DEBUG Processing 8/723 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,703 DEBUG Processing 712/730 atomic regions from SNP 213466 to 214066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,721 DEBUG Processing 90/665 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:51,756 DEBUG Processing 666/701 atomic regions from SNP 199514 to 200114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,839 DEBUG Processing 730/747 atomic regions from SNP 218801 to 219401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,893 DEBUG Processing 9/723 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,948 DEBUG Processing 91/665 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:51,972 DEBUG Processing 713/730 atomic regions from SNP 213766 to 214366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,007 DEBUG Processing 667/701 atomic regions from SNP 199814 to 200414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,117 DEBUG Processing 731/747 atomic regions from SNP 219101 to 219701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,129 DEBUG Processing 10/723 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,168 DEBUG Processing 92/665 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:52,235 DEBUG Processing 714/730 atomic regions from SNP 214066 to 214666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,253 DEBUG Processing 668/701 atomic regions from SNP 200114 to 200714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,371 DEBUG Processing 11/723 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,385 DEBUG Processing 93/665 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:52,403 DEBUG Processing 732/747 atomic regions from SNP 219401 to 220001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,488 DEBUG Processing 669/701 atomic regions from SNP 200414 to 201014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,511 DEBUG Processing 715/730 atomic regions from SNP 214366 to 214966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,596 DEBUG Processing 94/665 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:52,612 DEBUG Processing 12/723 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,670 DEBUG Processing 733/747 atomic regions from SNP 219701 to 220301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,725 DEBUG Processing 670/701 atomic regions from SNP 200714 to 201314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,791 DEBUG Processing 716/730 atomic regions from SNP 214666 to 215266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,813 DEBUG Processing 95/665 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:52,858 DEBUG Processing 13/723 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,938 DEBUG Processing 734/747 atomic regions from SNP 220001 to 220601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,983 DEBUG Processing 671/701 atomic regions from SNP 201014 to 201614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,036 DEBUG Processing 96/665 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:53,060 DEBUG Processing 717/730 atomic regions from SNP 214966 to 215566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,106 DEBUG Processing 14/723 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,230 DEBUG Processing 672/701 atomic regions from SNP 201314 to 201914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,237 DEBUG Processing 735/747 atomic regions from SNP 220301 to 220901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,257 DEBUG Processing 97/665 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:53,340 DEBUG Processing 718/730 atomic regions from SNP 215266 to 215866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,344 DEBUG Processing 15/723 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,478 DEBUG Processing 673/701 atomic regions from SNP 201614 to 202214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,486 DEBUG Processing 98/665 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:53,526 DEBUG Processing 736/747 atomic regions from SNP 220601 to 221201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,585 DEBUG Processing 16/723 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,594 DEBUG Processing 719/730 atomic regions from SNP 215566 to 216166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,715 DEBUG Processing 99/665 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:53,727 DEBUG Processing 674/701 atomic regions from SNP 201914 to 202514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,824 DEBUG Processing 737/747 atomic regions from SNP 220901 to 221501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,835 DEBUG Processing 17/723 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,851 DEBUG Processing 720/730 atomic regions from SNP 215866 to 216466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,944 DEBUG Processing 100/665 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:53,997 DEBUG Processing 675/701 atomic regions from SNP 202214 to 202814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,080 DEBUG Processing 18/723 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,100 DEBUG Processing 721/730 atomic regions from SNP 216166 to 216766 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,112 DEBUG Processing 738/747 atomic regions from SNP 221201 to 221801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,183 DEBUG Processing 101/665 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:54,264 DEBUG Processing 676/701 atomic regions from SNP 202514 to 203114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,320 DEBUG Processing 19/723 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,348 DEBUG Processing 722/730 atomic regions from SNP 216466 to 217066 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,397 DEBUG Processing 102/665 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:54,397 DEBUG Processing 739/747 atomic regions from SNP 221501 to 222101 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,541 DEBUG Processing 677/701 atomic regions from SNP 202814 to 203414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,554 DEBUG Processing 20/723 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,596 DEBUG Processing 723/730 atomic regions from SNP 216766 to 217366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,617 DEBUG Processing 103/665 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:54,676 DEBUG Processing 740/747 atomic regions from SNP 221801 to 222401 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,794 DEBUG Processing 21/723 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,818 DEBUG Processing 678/701 atomic regions from SNP 203114 to 203714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,837 DEBUG Processing 104/665 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:54,845 DEBUG Processing 724/730 atomic regions from SNP 217066 to 217666 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,926 DEBUG Processing 741/747 atomic regions from SNP 222101 to 222701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,031 DEBUG Processing 22/723 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,057 DEBUG Processing 105/665 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:55,090 DEBUG Processing 679/701 atomic regions from SNP 203414 to 204014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,110 DEBUG Processing 725/730 atomic regions from SNP 217366 to 217966 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,191 DEBUG Processing 742/747 atomic regions from SNP 222401 to 223001 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,271 DEBUG Processing 23/723 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,283 DEBUG Processing 106/665 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:55,363 DEBUG Processing 726/730 atomic regions from SNP 217666 to 218266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,367 DEBUG Processing 680/701 atomic regions from SNP 203714 to 204314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,441 DEBUG Processing 743/747 atomic regions from SNP 222701 to 223301 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,506 DEBUG Processing 24/723 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,527 DEBUG Processing 107/665 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:55,615 DEBUG Processing 727/730 atomic regions from SNP 217966 to 218566 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,644 DEBUG Processing 681/701 atomic regions from SNP 204014 to 204614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,695 DEBUG Processing 744/747 atomic regions from SNP 223001 to 223601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,749 DEBUG Processing 25/723 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,762 DEBUG Processing 108/665 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:55,870 DEBUG Processing 728/730 atomic regions from SNP 218266 to 218866 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,916 DEBUG Processing 682/701 atomic regions from SNP 204314 to 204914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,944 DEBUG Processing 745/747 atomic regions from SNP 223301 to 223901 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,980 DEBUG Processing 109/665 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:55,984 DEBUG Processing 26/723 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,113 DEBUG Processing 729/730 atomic regions from SNP 218566 to 219166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,179 DEBUG Processing 683/701 atomic regions from SNP 204614 to 205214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,186 DEBUG Processing 746/747 atomic regions from SNP 223601 to 224201 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,193 DEBUG Processing 110/665 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:56,221 DEBUG Processing 27/723 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,354 DEBUG Processing 730/730 atomic regions from SNP 218866 to 219466 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,428 DEBUG Processing 747/747 atomic regions from SNP 223901 to 224501 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,430 DEBUG Processing 111/665 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:56,439 DEBUG Processing 684/701 atomic regions from SNP 204914 to 205514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,476 DEBUG Processing 28/723 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,506 DEBUG Unique SNPs positions in subchromosome 1: 219467 2025-01-31 09:53:56,579 DEBUG Unique SNPs positions in subchromosome 1: 224502 2025-01-31 09:53:56,661 DEBUG Processing 112/665 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:56,713 DEBUG Processing 685/701 atomic regions from SNP 205214 to 205814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,724 DEBUG Processing 29/723 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,881 DEBUG Processing 113/665 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:56,969 DEBUG Processing 30/723 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,982 DEBUG Processing 686/701 atomic regions from SNP 205514 to 206114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,098 DEBUG Processing 114/665 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:57,199 DEBUG Processing 31/723 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,221 DEBUG Processing 687/701 atomic regions from SNP 205814 to 206414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,316 DEBUG Processing 115/665 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:57,433 DEBUG Processing 32/723 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,465 DEBUG Processing 688/701 atomic regions from SNP 206114 to 206714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,537 DEBUG Processing 116/665 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:57,663 DEBUG Processing 33/723 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,714 DEBUG Processing 689/701 atomic regions from SNP 206414 to 207014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,762 DEBUG Processing 117/665 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:57,893 DEBUG Processing 34/723 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,951 DEBUG Processing 690/701 atomic regions from SNP 206714 to 207314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,989 DEBUG Processing 118/665 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:58,123 DEBUG Processing 35/723 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,212 DEBUG Processing 691/701 atomic regions from SNP 207014 to 207614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:58,219 DEBUG Processing 119/665 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:58,355 DEBUG Processing 36/723 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,446 DEBUG Processing 120/665 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:58,482 DEBUG Processing 692/701 atomic regions from SNP 207314 to 207914 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:58,592 DEBUG Processing 37/723 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,669 DEBUG Processing 121/665 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:58,753 DEBUG Processing 693/701 atomic regions from SNP 207614 to 208214 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:58,829 DEBUG Processing 38/723 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,894 DEBUG Processing 122/665 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:59,015 DEBUG Processing 694/701 atomic regions from SNP 207914 to 208514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,055 DEBUG Processing 39/723 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,111 DEBUG Processing 123/665 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:59,259 DEBUG Processing 695/701 atomic regions from SNP 208214 to 208814 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,287 DEBUG Processing 40/723 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,328 DEBUG Processing 124/665 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:59,501 DEBUG Processing 696/701 atomic regions from SNP 208514 to 209114 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,521 DEBUG Processing 41/723 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,548 DEBUG Processing 125/665 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:59,740 DEBUG Processing 697/701 atomic regions from SNP 208814 to 209414 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,753 DEBUG Processing 42/723 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,769 DEBUG Processing 126/665 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 3 of 3). 2025-01-31 09:53:59,994 DEBUG Processing 43/723 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,001 DEBUG Processing 127/665 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:00,018 DEBUG Processing 698/701 atomic regions from SNP 209114 to 209714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,227 DEBUG Processing 44/723 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,232 DEBUG Processing 128/665 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:00,270 DEBUG Processing 699/701 atomic regions from SNP 209414 to 210014 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,458 DEBUG Processing 45/723 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,463 DEBUG Processing 129/665 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:00,529 DEBUG Processing 700/701 atomic regions from SNP 209714 to 210314 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,690 DEBUG Processing 46/723 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,690 DEBUG Processing 130/665 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:00,777 DEBUG Processing 701/701 atomic regions from SNP 210014 to 210614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,920 DEBUG Processing 131/665 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:00,920 DEBUG Unique SNPs positions in subchromosome 3: 210615 2025-01-31 09:54:00,921 DEBUG Processing 47/723 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,159 DEBUG Processing 48/723 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,161 DEBUG Processing 132/665 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:01,391 DEBUG Processing 133/665 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:01,396 DEBUG Processing 49/723 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,612 DEBUG Processing 134/665 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:01,631 DEBUG Processing 50/723 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,853 DEBUG Processing 135/665 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:01,883 DEBUG Processing 51/723 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,116 DEBUG Processing 52/723 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,117 DEBUG Processing 136/665 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:02,362 DEBUG Processing 53/723 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,378 DEBUG Processing 137/665 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:02,610 DEBUG Processing 54/723 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,631 DEBUG Processing 138/665 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:02,844 DEBUG Processing 55/723 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,883 DEBUG Processing 139/665 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:03,078 DEBUG Processing 56/723 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,131 DEBUG Processing 140/665 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:03,308 DEBUG Processing 57/723 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,379 DEBUG Processing 141/665 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:03,539 DEBUG Processing 58/723 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,642 DEBUG Processing 142/665 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:03,789 DEBUG Processing 59/723 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,870 DEBUG Processing 143/665 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:04,020 DEBUG Processing 60/723 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,119 DEBUG Processing 144/665 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:04,251 DEBUG Processing 61/723 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,375 DEBUG Processing 145/665 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:04,479 DEBUG Processing 62/723 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,624 DEBUG Processing 146/665 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:04,711 DEBUG Processing 63/723 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,850 DEBUG Processing 147/665 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:04,958 DEBUG Processing 64/723 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,074 DEBUG Processing 148/665 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:05,188 DEBUG Processing 65/723 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,286 DEBUG Processing 149/665 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:05,418 DEBUG Processing 66/723 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,500 DEBUG Processing 150/665 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:05,645 DEBUG Processing 67/723 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,715 DEBUG Processing 151/665 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:05,893 DEBUG Processing 68/723 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,927 DEBUG Processing 152/665 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:06,142 DEBUG Processing 153/665 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:06,144 DEBUG Processing 69/723 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,366 DEBUG Processing 154/665 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:06,380 DEBUG Processing 70/723 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,589 DEBUG Processing 155/665 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:06,618 DEBUG Processing 71/723 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,806 DEBUG Processing 156/665 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:06,853 DEBUG Processing 72/723 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,022 DEBUG Processing 157/665 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:07,089 DEBUG Processing 73/723 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,245 DEBUG Processing 158/665 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:07,322 DEBUG Processing 74/723 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,476 DEBUG Processing 159/665 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:07,560 DEBUG Processing 75/723 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,719 DEBUG Processing 160/665 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:07,797 DEBUG Processing 76/723 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,976 DEBUG Processing 161/665 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:08,028 DEBUG Processing 77/723 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,218 DEBUG Processing 162/665 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:08,256 DEBUG Processing 78/723 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,439 DEBUG Processing 163/665 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:08,487 DEBUG Processing 79/723 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,651 DEBUG Processing 164/665 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:08,712 DEBUG Processing 80/723 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,865 DEBUG Processing 165/665 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:08,936 DEBUG Processing 81/723 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,081 DEBUG Processing 166/665 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:09,158 DEBUG Processing 82/723 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,197 DEBUG Subchromosome time: 229.04040294897277, subchromosome SNPs: 224502 2025-01-31 09:54:09,197 DEBUG Estimated BADs: [1.41, 0.47, 1.41, 0.70, 1.41, 2.82, 1.41, 0.28, 0.70, 1.41, 4.23, 0.28, 1.41, 0.70, 2.82, 12.68, 1.41, 8.46, 0.70, 1.41, 0.47, 1.41, 0.70, 7.05, 1.41] SNP counts: [20555, 2107, 23734, 15293, 2720, 6589, 5984, 5407, 11720, 3231, 9059, 3297, 10804, 5912, 7389, 3919, 16335, 205, 3378, 12969, 16790, 25233, 5379, 3588, 2905] SNP IDs counts: [20555, 2107, 23734, 15293, 2720, 6589, 5984, 5407, 11720, 3231, 9059, 3297, 10804, 5912, 7389, 3919, 16335, 205, 3378, 12969, 16790, 25233, 5379, 3588, 2905] Critical gap: 618067bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 14.82Mbp, 16.14Mbp, 29.52Mbp, 38.43Mbp, 39.96Mbp, 43.47Mbp, 46.79Mbp, 50.10Mbp, 57.02Mbp, 59.22Mbp, 64.05Mbp, 66.16Mbp, 72.12Mbp, 75.50Mbp, 79.61Mbp, 81.65Mbp, 91.08Mbp, 91.19Mbp, 93.04Mbp, 100.11Mbp, 109.91Mbp, 123.87Mbp, 126.89Mbp, 128.79Mbp, 130.69Mbp] 2025-01-31 09:54:09,197 DEBUG chr10 time: 229.04096879495773 s 2025-01-31 09:54:09,302 DEBUG Processing 167/665 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:09,343 DEBUG chr10: Fitting background model for 25 segments 2025-01-31 09:54:09,389 DEBUG Processing 83/723 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,522 DEBUG Processing 168/665 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:09,620 DEBUG Processing 84/723 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,746 DEBUG Processing 169/665 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:09,853 DEBUG Processing 85/723 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,969 DEBUG Processing 170/665 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:10,094 DEBUG Processing 86/723 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,199 DEBUG Processing 171/665 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:10,327 DEBUG Processing 87/723 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,423 DEBUG Processing 172/665 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:10,563 DEBUG Processing 88/723 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,642 DEBUG Processing 173/665 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:10,805 DEBUG Processing 89/723 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,859 DEBUG Processing 174/665 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:11,043 DEBUG Processing 90/723 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,088 DEBUG Processing 175/665 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:11,281 DEBUG Processing 91/723 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,314 DEBUG Processing 176/665 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:11,522 DEBUG Processing 177/665 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:11,523 DEBUG Processing 92/723 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,732 DEBUG Processing 178/665 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:11,765 DEBUG Processing 93/723 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,946 DEBUG Processing 179/665 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:12,004 DEBUG Processing 94/723 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,159 DEBUG Processing 180/665 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:12,239 DEBUG Processing 95/723 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,379 DEBUG Processing 181/665 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:12,474 DEBUG Processing 96/723 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,597 DEBUG Processing 182/665 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:12,708 DEBUG Processing 97/723 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,819 DEBUG Processing 183/665 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:12,944 DEBUG Processing 98/723 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,035 DEBUG Processing 184/665 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:13,185 DEBUG Processing 99/723 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,254 DEBUG Processing 185/665 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:13,447 DEBUG Processing 100/723 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,473 DEBUG Processing 186/665 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:13,688 DEBUG Processing 187/665 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:13,713 DEBUG Processing 101/723 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,902 DEBUG Processing 188/665 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:13,983 DEBUG Processing 102/723 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,113 DEBUG Processing 189/665 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:14,256 DEBUG Processing 103/723 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,324 DEBUG Processing 190/665 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:14,527 DEBUG Processing 104/723 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,542 DEBUG Processing 191/665 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:14,755 DEBUG Processing 192/665 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:14,796 DEBUG Processing 105/723 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,982 DEBUG Processing 193/665 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:15,065 DEBUG Processing 106/723 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,195 DEBUG Processing 194/665 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:15,336 DEBUG Processing 107/723 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,417 DEBUG Processing 195/665 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:15,604 DEBUG Processing 108/723 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,627 DEBUG Processing 196/665 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:15,841 DEBUG Processing 197/665 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:15,874 DEBUG Processing 109/723 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,082 DEBUG Processing 198/665 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:16,130 DEBUG Processing 110/723 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,302 DEBUG Processing 199/665 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:16,389 DEBUG Processing 111/723 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,517 DEBUG Processing 200/665 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:16,631 DEBUG Processing 112/723 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,735 DEBUG Processing 201/665 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:16,870 DEBUG Processing 113/723 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,952 DEBUG Processing 202/665 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:17,110 DEBUG Processing 114/723 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,175 DEBUG Processing 203/665 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:17,346 DEBUG Processing 115/723 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,395 DEBUG Processing 204/665 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:17,581 DEBUG Processing 116/723 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,618 DEBUG Processing 205/665 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:17,819 DEBUG Processing 117/723 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,843 DEBUG Processing 206/665 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:18,055 DEBUG Processing 118/723 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,088 DEBUG Processing 207/665 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:18,297 DEBUG Processing 119/723 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,331 DEBUG Processing 208/665 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:18,538 DEBUG Processing 120/723 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,573 DEBUG Processing 209/665 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:18,779 DEBUG Processing 121/723 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,801 DEBUG Processing 210/665 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:19,018 DEBUG Processing 122/723 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,023 DEBUG Processing 211/665 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:19,239 DEBUG Processing 212/665 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:19,252 DEBUG Processing 123/723 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,457 DEBUG Processing 213/665 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:19,486 DEBUG Processing 124/723 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,673 DEBUG Processing 214/665 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:19,720 DEBUG Processing 125/723 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,893 DEBUG Processing 215/665 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:19,961 DEBUG Processing 126/723 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,131 DEBUG Processing 216/665 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:20,201 DEBUG Processing 127/723 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,361 DEBUG Processing 217/665 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:20,437 DEBUG Processing 128/723 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,563 DEBUG Subchromosome time: 235.8103543720208, subchromosome SNPs: 219467 2025-01-31 09:54:20,563 DEBUG Estimated BADs: [3.31, 0.24, 0.83, 1.65, 3.31, 1.65, 0.55, 1.65, 3.31, 0.55, 1.65, 0.41, 1.65, 0.28, 0.83, 0.28, 0.83, 9.92, 4.96, 0.83, 4.96, 0.41, 1.65, 4.96, 11.57, 1.65, 4.96, 0.33, 0.83, 4.96, 1.65, 3.31, 1.65, 3.31, 8.26, 3.31, 1.65] SNP counts: [2715, 4285, 3950, 2392, 4568, 4439, 3625, 10696, 4051, 9946, 6297, 11081, 9603, 7209, 7497, 3306, 16475, 2249, 2579, 4030, 467, 1490, 13196, 1912, 1022, 16158, 4324, 11700, 2727, 5190, 6218, 2208, 8718, 4641, 8988, 5125, 4390] SNP IDs counts: [2715, 4285, 3950, 2392, 4568, 4439, 3625, 10696, 4051, 9946, 6297, 11081, 9603, 7209, 7497, 3306, 16475, 2249, 2579, 4030, 467, 1490, 13196, 1912, 1022, 16158, 4324, 11700, 2727, 5190, 6218, 2208, 8718, 4641, 8988, 5125, 4390] Critical gap: 619230bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.68Mbp, 7.38Mbp, 9.60Mbp, 10.88Mbp, 13.28Mbp, 15.80Mbp, 17.85Mbp, 25.55Mbp, 27.77Mbp, 33.59Mbp, 37.01Mbp, 43.70Mbp, 49.01Mbp, 53.31Mbp, 57.99Mbp, 60.02Mbp, 69.75Mbp, 70.93Mbp, 72.52Mbp, 75.03Mbp, 75.30Mbp, 76.20Mbp, 83.57Mbp, 84.57Mbp, 85.10Mbp, 93.86Mbp, 96.18Mbp, 103.05Mbp, 104.53Mbp, 107.38Mbp, 110.69Mbp, 111.85Mbp, 116.87Mbp, 119.32Mbp, 124.13Mbp, 126.84Mbp, 129.40Mbp] 2025-01-31 09:54:20,563 DEBUG chr8 time: 235.81110588205047 s 2025-01-31 09:54:20,598 DEBUG Processing 218/665 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:20,672 DEBUG Processing 129/723 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,728 DEBUG chr8: Fitting background model for 37 segments 2025-01-31 09:54:20,839 DEBUG Processing 219/665 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:20,914 DEBUG Processing 130/723 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,083 DEBUG Processing 220/665 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:21,160 DEBUG Processing 131/723 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,329 DEBUG Processing 221/665 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:21,409 DEBUG Processing 132/723 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,560 DEBUG Processing 222/665 atomic regions from SNP 66521 to 67122 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:21,657 DEBUG Processing 133/723 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,779 DEBUG Processing 223/665 atomic regions from SNP 66822 to 67423 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:21,910 DEBUG Processing 134/723 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,999 DEBUG Processing 224/665 atomic regions from SNP 67123 to 67724 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:22,147 DEBUG Processing 135/723 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,221 DEBUG Processing 225/665 atomic regions from SNP 67424 to 68025 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:22,382 DEBUG Processing 136/723 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,456 DEBUG Processing 226/665 atomic regions from SNP 67725 to 68326 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:22,628 DEBUG Processing 137/723 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,662 DEBUG Subchromosome time: 224.49541953904554, subchromosome SNPs: 210615 2025-01-31 09:54:22,662 DEBUG Estimated BADs: [0.73, 4.38, 0.49, 2.92, 0.49, 7.29, 0.49, 4.38, 0.49, 5.83, 0.73, 0.00, 0.49, 4.38, 0.73, 4.38, 0.29, 1.46, 0.73, 7.29, 4.38, 0.36, 2.92, 0.73, 0.24, 1.46, 0.29, 1.46, 0.49, 1.46, 0.36, 1.46, 4.38, 1.46, 0.24, 1.46, 0.36, 1.46, 0.24, 1.46, 2.92, 0.73, 2.92, 1.46, 2.92, 5.83, 1.46, 7.29, 2.92] SNP counts: [797, 2354, 840, 2549, 3911, 348, 3287, 2230, 2293, 1780, 441, 33, 1441, 3025, 1838, 7325, 1778, 8436, 8379, 2395, 3046, 2038, 2730, 3560, 5406, 2091, 9614, 10492, 6605, 6594, 3005, 2262, 3150, 7309, 5890, 3592, 2704, 1806, 4210, 4380, 9458, 9000, 3554, 26543, 1629, 3247, 23640, 1338, 7105] SNP IDs counts: [797, 2354, 840, 2549, 3911, 348, 3287, 2230, 2293, 1780, 441, 33, 1441, 3025, 1838, 7325, 1778, 8436, 8379, 2395, 3046, 2038, 2730, 3560, 5406, 2091, 9614, 10492, 6605, 6594, 3005, 2262, 3150, 7309, 5890, 3592, 2704, 1806, 4210, 4380, 9458, 9000, 3554, 26543, 1629, 3247, 23640, 1338, 7105] Critical gap: 669619bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.57Mbp, 5.11Mbp, 5.72Mbp, 7.30Mbp, 12.88Mbp, 13.06Mbp, 15.91Mbp, 17.08Mbp, 18.88Mbp, 19.82Mbp, 20.10Mbp[0.68Mbp], 21.37Mbp[1.40Mbp], 24.27Mbp, 25.93Mbp, 27.16Mbp, 31.16Mbp, 33.72Mbp, 38.27Mbp, 44.30Mbp, 45.56Mbp, 47.15Mbp, 48.50Mbp, 49.98Mbp, 52.13Mbp, 55.44Mbp, 56.69Mbp, 63.01Mbp, 68.79Mbp, 72.47Mbp, 76.27Mbp, 78.00Mbp, 79.23Mbp, 80.88Mbp, 84.90Mbp, 88.50Mbp, 90.54Mbp, 92.06Mbp, 93.08Mbp, 95.65Mbp, 98.05Mbp, 103.09Mbp, 109.09Mbp, 110.98Mbp, 125.39Mbp, 126.25Mbp, 127.97Mbp, 140.81Mbp, 141.51Mbp, 145.44Mbp] 2025-01-31 09:54:22,662 DEBUG chr7 time: 224.49614963005297 s 2025-01-31 09:54:22,705 DEBUG Processing 227/665 atomic regions from SNP 68026 to 68627 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:22,846 DEBUG chr7: Fitting background model for 48 segments 2025-01-31 09:54:22,870 DEBUG Processing 138/723 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,931 DEBUG Processing 228/665 atomic regions from SNP 68327 to 68928 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:23,105 DEBUG Processing 139/723 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,164 DEBUG Processing 229/665 atomic regions from SNP 68628 to 69229 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:23,339 DEBUG Processing 140/723 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,391 DEBUG Processing 230/665 atomic regions from SNP 68929 to 69530 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:23,575 DEBUG Processing 141/723 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,621 DEBUG Processing 231/665 atomic regions from SNP 69230 to 69831 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:23,808 DEBUG Processing 142/723 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,850 DEBUG Processing 232/665 atomic regions from SNP 69531 to 70132 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:24,048 DEBUG Processing 143/723 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,081 DEBUG Processing 233/665 atomic regions from SNP 69832 to 70433 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:24,293 DEBUG Processing 144/723 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,309 DEBUG Processing 234/665 atomic regions from SNP 70133 to 70734 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:24,537 DEBUG Processing 145/723 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,541 DEBUG Processing 235/665 atomic regions from SNP 70434 to 71035 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:24,766 DEBUG Processing 236/665 atomic regions from SNP 70735 to 71336 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:24,775 DEBUG Processing 146/723 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,994 DEBUG Processing 237/665 atomic regions from SNP 71036 to 71637 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:25,020 DEBUG Processing 147/723 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,221 DEBUG Processing 238/665 atomic regions from SNP 71337 to 71938 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:25,264 DEBUG Processing 148/723 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,456 DEBUG Processing 239/665 atomic regions from SNP 71638 to 72239 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:25,504 DEBUG Processing 149/723 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,716 DEBUG Processing 240/665 atomic regions from SNP 71939 to 72540 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:25,739 DEBUG Processing 150/723 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,983 DEBUG Processing 151/723 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,991 DEBUG Processing 241/665 atomic regions from SNP 72240 to 72841 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:26,218 DEBUG Processing 152/723 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,249 DEBUG Processing 242/665 atomic regions from SNP 72541 to 73142 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:26,455 DEBUG Processing 153/723 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,478 DEBUG Processing 243/665 atomic regions from SNP 72842 to 73443 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:26,693 DEBUG Processing 154/723 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,706 DEBUG Processing 244/665 atomic regions from SNP 73143 to 73744 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:26,938 DEBUG Processing 155/723 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,941 DEBUG Processing 245/665 atomic regions from SNP 73444 to 74045 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:27,186 DEBUG Processing 156/723 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,199 DEBUG Processing 246/665 atomic regions from SNP 73745 to 74346 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:27,433 DEBUG Processing 157/723 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,468 DEBUG Processing 247/665 atomic regions from SNP 74046 to 74647 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:27,676 DEBUG Processing 158/723 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,688 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:54:27,738 DEBUG Processing 248/665 atomic regions from SNP 74347 to 74948 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:27,924 DEBUG Processing 159/723 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,003 DEBUG Processing 249/665 atomic regions from SNP 74648 to 75249 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:28,168 DEBUG Processing 160/723 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,242 DEBUG Processing 250/665 atomic regions from SNP 74949 to 75550 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:28,410 DEBUG Processing 161/723 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,476 DEBUG Processing 251/665 atomic regions from SNP 75250 to 75851 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:28,655 DEBUG Processing 162/723 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,708 DEBUG Processing 252/665 atomic regions from SNP 75551 to 76152 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:28,920 DEBUG Processing 163/723 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,941 DEBUG Processing 253/665 atomic regions from SNP 75852 to 76453 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:29,172 DEBUG Processing 254/665 atomic regions from SNP 76153 to 76754 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:29,199 DEBUG Processing 164/723 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,412 DEBUG Processing 255/665 atomic regions from SNP 76454 to 77055 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:29,446 DEBUG Processing 165/723 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,665 DEBUG Processing 256/665 atomic regions from SNP 76755 to 77356 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:29,682 DEBUG Processing 166/723 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,929 DEBUG Processing 257/665 atomic regions from SNP 77056 to 77657 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:29,932 DEBUG Processing 167/723 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,173 DEBUG Processing 168/723 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,192 DEBUG Processing 258/665 atomic regions from SNP 77357 to 77958 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:30,419 DEBUG Processing 169/723 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,451 DEBUG Processing 259/665 atomic regions from SNP 77658 to 78259 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:30,660 DEBUG Processing 170/723 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,713 DEBUG Processing 260/665 atomic regions from SNP 77959 to 78560 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:30,899 DEBUG Processing 171/723 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,983 DEBUG Processing 261/665 atomic regions from SNP 78260 to 78861 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:31,135 DEBUG Processing 172/723 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,229 DEBUG Processing 262/665 atomic regions from SNP 78561 to 79162 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:31,370 DEBUG Processing 173/723 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,488 DEBUG Processing 263/665 atomic regions from SNP 78862 to 79463 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:31,605 DEBUG Processing 174/723 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,757 DEBUG Processing 264/665 atomic regions from SNP 79163 to 79764 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:31,847 DEBUG Processing 175/723 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,036 DEBUG Processing 265/665 atomic regions from SNP 79464 to 80065 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:32,092 DEBUG Processing 176/723 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,299 DEBUG Processing 266/665 atomic regions from SNP 79765 to 80366 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:32,338 DEBUG Processing 177/723 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,534 DEBUG Processing 267/665 atomic regions from SNP 80066 to 80667 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:32,583 DEBUG Processing 178/723 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,767 DEBUG Processing 268/665 atomic regions from SNP 80367 to 80968 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:32,821 DEBUG Processing 179/723 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,004 DEBUG Processing 269/665 atomic regions from SNP 80668 to 81269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:33,067 DEBUG Processing 180/723 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,258 DEBUG Processing 270/665 atomic regions from SNP 80969 to 81570 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:33,313 DEBUG Processing 181/723 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,508 DEBUG Processing 271/665 atomic regions from SNP 81270 to 81871 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:33,570 DEBUG Processing 182/723 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,757 DEBUG Processing 272/665 atomic regions from SNP 81571 to 82172 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:33,812 DEBUG Processing 183/723 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,993 DEBUG Processing 273/665 atomic regions from SNP 81872 to 82473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:34,056 DEBUG Processing 184/723 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,232 DEBUG Processing 274/665 atomic regions from SNP 82173 to 82773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:34,299 DEBUG Processing 185/723 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,495 DEBUG Processing 275/665 atomic regions from SNP 82473 to 83073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:34,549 DEBUG Processing 186/723 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,749 DEBUG Processing 276/665 atomic regions from SNP 82773 to 83373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:34,814 DEBUG Processing 187/723 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,999 DEBUG Processing 277/665 atomic regions from SNP 83073 to 83673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:35,067 DEBUG Processing 188/723 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,267 DEBUG Processing 278/665 atomic regions from SNP 83373 to 83973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:35,317 DEBUG Processing 189/723 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,528 DEBUG Processing 279/665 atomic regions from SNP 83673 to 84273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:35,565 DEBUG Processing 190/723 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,767 DEBUG Processing 280/665 atomic regions from SNP 83973 to 84573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:35,805 DEBUG Processing 191/723 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,010 DEBUG Processing 281/665 atomic regions from SNP 84273 to 84873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:36,049 DEBUG Processing 192/723 atomic regions from SNP 57491 to 58092 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,251 DEBUG Processing 282/665 atomic regions from SNP 84573 to 85173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:36,292 DEBUG Processing 193/723 atomic regions from SNP 57792 to 58393 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,486 DEBUG Processing 283/665 atomic regions from SNP 84873 to 85473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:36,535 DEBUG Processing 194/723 atomic regions from SNP 58093 to 58694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,716 DEBUG Processing 284/665 atomic regions from SNP 85173 to 85773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:36,774 DEBUG Processing 195/723 atomic regions from SNP 58394 to 58995 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,945 DEBUG Processing 285/665 atomic regions from SNP 85473 to 86073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:37,014 DEBUG Processing 196/723 atomic regions from SNP 58695 to 59296 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,165 DEBUG Processing 286/665 atomic regions from SNP 85773 to 86373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:37,252 DEBUG Processing 197/723 atomic regions from SNP 58996 to 59597 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,412 DEBUG Processing 287/665 atomic regions from SNP 86073 to 86673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:37,492 DEBUG Processing 198/723 atomic regions from SNP 59297 to 59898 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,635 DEBUG Processing 288/665 atomic regions from SNP 86373 to 86973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:37,729 DEBUG Processing 199/723 atomic regions from SNP 59598 to 60199 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,862 DEBUG Processing 289/665 atomic regions from SNP 86673 to 87273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:37,973 DEBUG Processing 200/723 atomic regions from SNP 59899 to 60500 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,088 DEBUG Processing 290/665 atomic regions from SNP 86973 to 87573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:38,233 DEBUG Processing 201/723 atomic regions from SNP 60200 to 60801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,314 DEBUG Processing 291/665 atomic regions from SNP 87273 to 87873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:38,477 DEBUG Processing 202/723 atomic regions from SNP 60501 to 61102 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,569 DEBUG Processing 292/665 atomic regions from SNP 87573 to 88173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:38,726 DEBUG Processing 203/723 atomic regions from SNP 60802 to 61403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,809 DEBUG Processing 293/665 atomic regions from SNP 87873 to 88473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:38,977 DEBUG Processing 204/723 atomic regions from SNP 61103 to 61704 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,045 DEBUG Processing 294/665 atomic regions from SNP 88173 to 88773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:39,233 DEBUG Processing 205/723 atomic regions from SNP 61404 to 62005 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,282 DEBUG Processing 295/665 atomic regions from SNP 88473 to 89073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:39,478 DEBUG Processing 206/723 atomic regions from SNP 61705 to 62306 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,517 DEBUG Processing 296/665 atomic regions from SNP 88773 to 89373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:39,726 DEBUG Processing 207/723 atomic regions from SNP 62006 to 62607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,753 DEBUG Processing 297/665 atomic regions from SNP 89073 to 89673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:39,975 DEBUG Processing 208/723 atomic regions from SNP 62307 to 62908 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,000 DEBUG Processing 298/665 atomic regions from SNP 89373 to 89973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:40,229 DEBUG Processing 209/723 atomic regions from SNP 62608 to 63209 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,253 DEBUG Processing 299/665 atomic regions from SNP 89673 to 90273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:40,488 DEBUG Processing 210/723 atomic regions from SNP 62909 to 63510 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,513 DEBUG Processing 300/665 atomic regions from SNP 89973 to 90573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:40,743 DEBUG Processing 211/723 atomic regions from SNP 63210 to 63811 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,783 DEBUG Processing 301/665 atomic regions from SNP 90273 to 90873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:41,008 DEBUG Processing 212/723 atomic regions from SNP 63511 to 64112 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,043 DEBUG Processing 302/665 atomic regions from SNP 90573 to 91173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:41,252 DEBUG Processing 213/723 atomic regions from SNP 63812 to 64413 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,288 DEBUG Processing 303/665 atomic regions from SNP 90873 to 91473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:41,497 DEBUG Processing 214/723 atomic regions from SNP 64113 to 64714 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,531 DEBUG Processing 304/665 atomic regions from SNP 91173 to 91773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:41,741 DEBUG Processing 215/723 atomic regions from SNP 64414 to 65015 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,774 DEBUG Processing 305/665 atomic regions from SNP 91473 to 92073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:41,980 DEBUG Processing 216/723 atomic regions from SNP 64715 to 65316 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,021 DEBUG Processing 306/665 atomic regions from SNP 91773 to 92373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:42,220 DEBUG Processing 217/723 atomic regions from SNP 65016 to 65617 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,277 DEBUG Processing 307/665 atomic regions from SNP 92073 to 92673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:42,462 DEBUG Processing 218/723 atomic regions from SNP 65317 to 65918 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,553 DEBUG Processing 308/665 atomic regions from SNP 92373 to 92973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:42,726 DEBUG Processing 219/723 atomic regions from SNP 65618 to 66219 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,819 DEBUG Processing 309/665 atomic regions from SNP 92673 to 93273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:42,989 DEBUG Processing 220/723 atomic regions from SNP 65919 to 66520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,090 DEBUG Processing 310/665 atomic regions from SNP 92973 to 93573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:43,232 DEBUG Processing 221/723 atomic regions from SNP 66220 to 66821 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,353 DEBUG Processing 311/665 atomic regions from SNP 93273 to 93873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:43,468 DEBUG Processing 222/723 atomic regions from SNP 66521 to 67122 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,602 DEBUG Processing 312/665 atomic regions from SNP 93573 to 94173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:43,705 DEBUG Processing 223/723 atomic regions from SNP 66822 to 67423 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,825 DEBUG Processing 313/665 atomic regions from SNP 93873 to 94473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:43,937 DEBUG Processing 224/723 atomic regions from SNP 67123 to 67724 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,048 DEBUG Processing 314/665 atomic regions from SNP 94173 to 94773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:44,177 DEBUG Processing 225/723 atomic regions from SNP 67424 to 68025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,284 DEBUG Processing 315/665 atomic regions from SNP 94473 to 95073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:44,419 DEBUG Processing 226/723 atomic regions from SNP 67725 to 68326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,528 DEBUG Processing 316/665 atomic regions from SNP 94773 to 95373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:44,664 DEBUG Processing 227/723 atomic regions from SNP 68026 to 68626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,765 DEBUG Processing 317/665 atomic regions from SNP 95073 to 95673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:44,902 DEBUG Processing 228/723 atomic regions from SNP 68326 to 68926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,004 DEBUG Processing 318/665 atomic regions from SNP 95373 to 95973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:45,147 DEBUG Processing 229/723 atomic regions from SNP 68626 to 69226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,245 DEBUG Processing 319/665 atomic regions from SNP 95673 to 96273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:45,389 DEBUG Processing 230/723 atomic regions from SNP 68926 to 69526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,486 DEBUG Processing 320/665 atomic regions from SNP 95973 to 96573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:45,630 DEBUG Processing 231/723 atomic regions from SNP 69226 to 69826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,725 DEBUG Processing 321/665 atomic regions from SNP 96273 to 96873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:45,864 DEBUG Processing 232/723 atomic regions from SNP 69526 to 70126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,981 DEBUG Processing 322/665 atomic regions from SNP 96573 to 97173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:46,101 DEBUG Processing 233/723 atomic regions from SNP 69826 to 70426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,237 DEBUG Processing 323/665 atomic regions from SNP 96873 to 97473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:46,354 DEBUG Processing 234/723 atomic regions from SNP 70126 to 70726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,499 DEBUG Processing 324/665 atomic regions from SNP 97173 to 97773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:46,639 DEBUG Processing 235/723 atomic regions from SNP 70426 to 71026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,732 DEBUG Processing 325/665 atomic regions from SNP 97473 to 98073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:46,888 DEBUG Processing 236/723 atomic regions from SNP 70726 to 71326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,962 DEBUG Processing 326/665 atomic regions from SNP 97773 to 98373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:47,120 DEBUG Processing 237/723 atomic regions from SNP 71026 to 71626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,200 DEBUG Processing 327/665 atomic regions from SNP 98073 to 98673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:47,361 DEBUG Processing 238/723 atomic regions from SNP 71326 to 71926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,419 DEBUG Processing 328/665 atomic regions from SNP 98373 to 98973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:47,604 DEBUG Processing 239/723 atomic regions from SNP 71626 to 72226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,637 DEBUG Processing 329/665 atomic regions from SNP 98673 to 99273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:47,863 DEBUG Processing 330/665 atomic regions from SNP 98973 to 99573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:47,870 DEBUG Processing 240/723 atomic regions from SNP 71926 to 72526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,091 DEBUG Processing 331/665 atomic regions from SNP 99273 to 99873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:48,138 DEBUG Processing 241/723 atomic regions from SNP 72226 to 72826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,324 DEBUG Processing 332/665 atomic regions from SNP 99573 to 100173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:48,408 DEBUG Processing 242/723 atomic regions from SNP 72526 to 73126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,558 DEBUG Processing 333/665 atomic regions from SNP 99873 to 100473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:48,677 DEBUG Processing 243/723 atomic regions from SNP 72826 to 73426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,801 DEBUG Processing 334/665 atomic regions from SNP 100173 to 100773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:48,952 DEBUG Processing 244/723 atomic regions from SNP 73126 to 73726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,044 DEBUG Processing 335/665 atomic regions from SNP 100473 to 101073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:49,222 DEBUG Processing 245/723 atomic regions from SNP 73426 to 74026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,284 DEBUG Processing 336/665 atomic regions from SNP 100773 to 101373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:49,476 DEBUG Processing 246/723 atomic regions from SNP 73726 to 74326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,521 DEBUG Processing 337/665 atomic regions from SNP 101073 to 101673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:49,714 DEBUG Processing 247/723 atomic regions from SNP 74026 to 74626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,761 DEBUG Processing 338/665 atomic regions from SNP 101373 to 101973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:49,954 DEBUG Processing 248/723 atomic regions from SNP 74326 to 74926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,002 DEBUG Processing 339/665 atomic regions from SNP 101673 to 102273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:50,200 DEBUG Processing 249/723 atomic regions from SNP 74626 to 75226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,245 DEBUG Processing 340/665 atomic regions from SNP 101973 to 102573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:50,451 DEBUG Processing 250/723 atomic regions from SNP 74926 to 75526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,487 DEBUG Processing 341/665 atomic regions from SNP 102273 to 102873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:50,725 DEBUG Processing 251/723 atomic regions from SNP 75226 to 75826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,728 DEBUG Processing 342/665 atomic regions from SNP 102573 to 103173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:50,964 DEBUG Processing 343/665 atomic regions from SNP 102873 to 103473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:51,001 DEBUG Processing 252/723 atomic regions from SNP 75526 to 76126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,195 DEBUG Processing 344/665 atomic regions from SNP 103173 to 103773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:51,269 DEBUG Processing 253/723 atomic regions from SNP 75826 to 76426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,420 DEBUG Processing 345/665 atomic regions from SNP 103473 to 104073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:51,533 DEBUG Processing 254/723 atomic regions from SNP 76126 to 76726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,588 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:54:51,591 DEBUG chr11: Signal quantile: 0.982. signal threshold: 13. Best RMSEA: 0.009 2025-01-31 09:54:51,658 DEBUG Processing 346/665 atomic regions from SNP 103773 to 104373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:51,790 DEBUG Processing 255/723 atomic regions from SNP 76426 to 77026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,897 DEBUG Processing 347/665 atomic regions from SNP 104073 to 104673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:52,039 DEBUG Processing 256/723 atomic regions from SNP 76726 to 77326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,155 DEBUG Processing 348/665 atomic regions from SNP 104373 to 104973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:52,287 DEBUG Processing 257/723 atomic regions from SNP 77026 to 77626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,402 DEBUG Processing 349/665 atomic regions from SNP 104673 to 105273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:52,529 DEBUG Processing 258/723 atomic regions from SNP 77326 to 77926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,642 DEBUG Processing 350/665 atomic regions from SNP 104973 to 105573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:52,773 DEBUG Processing 259/723 atomic regions from SNP 77626 to 78226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,897 DEBUG Processing 351/665 atomic regions from SNP 105273 to 105873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:53,019 DEBUG Processing 260/723 atomic regions from SNP 77926 to 78526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,133 DEBUG Processing 352/665 atomic regions from SNP 105573 to 106173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:53,262 DEBUG Processing 261/723 atomic regions from SNP 78226 to 78826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,388 DEBUG Processing 353/665 atomic regions from SNP 105873 to 106473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:53,501 DEBUG Processing 262/723 atomic regions from SNP 78526 to 79126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,646 DEBUG Processing 354/665 atomic regions from SNP 106173 to 106773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:53,746 DEBUG Processing 263/723 atomic regions from SNP 78826 to 79426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,881 DEBUG Processing 355/665 atomic regions from SNP 106473 to 107073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:53,991 DEBUG Processing 264/723 atomic regions from SNP 79126 to 79726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,027 DEBUG chr11 total SNP count: 211867 2025-01-31 09:54:54,027 DEBUG chr11 length: 122082543 2025-01-31 09:54:54,027 DEBUG ----------------------------------------- 2025-01-31 09:54:54,028 INFO Processing SNPs in chr11 2025-01-31 09:54:54,111 DEBUG Processing 356/665 atomic regions from SNP 106773 to 107373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:54,227 DEBUG Processing 265/723 atomic regions from SNP 79426 to 80026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,242 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211867)] 2025-01-31 09:54:54,343 DEBUG Processing 357/665 atomic regions from SNP 107073 to 107673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:54,391 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:54,465 DEBUG Processing 266/723 atomic regions from SNP 79726 to 80326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,585 DEBUG Processing 358/665 atomic regions from SNP 107373 to 107973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:54,694 DEBUG Processing 267/723 atomic regions from SNP 80026 to 80626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,815 DEBUG Processing 359/665 atomic regions from SNP 107673 to 108273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:54,935 DEBUG Processing 268/723 atomic regions from SNP 80326 to 80926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,049 DEBUG Processing 360/665 atomic regions from SNP 107973 to 108573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:55,167 DEBUG Processing 269/723 atomic regions from SNP 80626 to 81226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,283 DEBUG Processing 361/665 atomic regions from SNP 108273 to 108873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:55,396 DEBUG Processing 270/723 atomic regions from SNP 80926 to 81526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,516 DEBUG Processing 362/665 atomic regions from SNP 108573 to 109173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:55,629 DEBUG Processing 271/723 atomic regions from SNP 81226 to 81826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,747 DEBUG Processing 363/665 atomic regions from SNP 108873 to 109473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:55,864 DEBUG Processing 272/723 atomic regions from SNP 81526 to 82126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,991 DEBUG Processing 364/665 atomic regions from SNP 109173 to 109773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:56,099 DEBUG Processing 273/723 atomic regions from SNP 81826 to 82426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,221 DEBUG Processing 365/665 atomic regions from SNP 109473 to 110073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:56,338 DEBUG Processing 274/723 atomic regions from SNP 82126 to 82726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,453 DEBUG Processing 366/665 atomic regions from SNP 109773 to 110373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:56,572 DEBUG Processing 275/723 atomic regions from SNP 82426 to 83026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,683 DEBUG Processing 367/665 atomic regions from SNP 110073 to 110673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:56,800 DEBUG Processing 276/723 atomic regions from SNP 82726 to 83326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,918 DEBUG Processing 368/665 atomic regions from SNP 110373 to 110973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:57,035 DEBUG Processing 277/723 atomic regions from SNP 83026 to 83626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,156 DEBUG Processing 369/665 atomic regions from SNP 110673 to 111273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:57,268 DEBUG Processing 278/723 atomic regions from SNP 83326 to 83926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,410 DEBUG Processing 370/665 atomic regions from SNP 110973 to 111573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:57,501 DEBUG Processing 279/723 atomic regions from SNP 83626 to 84226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,662 DEBUG Processing 371/665 atomic regions from SNP 111273 to 111873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:57,746 DEBUG Processing 280/723 atomic regions from SNP 83926 to 84526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,917 DEBUG Processing 372/665 atomic regions from SNP 111573 to 112173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:58,003 DEBUG Processing 281/723 atomic regions from SNP 84226 to 84826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,149 DEBUG Processing 373/665 atomic regions from SNP 111873 to 112473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:58,256 DEBUG Processing 282/723 atomic regions from SNP 84526 to 85126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,382 DEBUG Processing 374/665 atomic regions from SNP 112173 to 112773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:58,503 DEBUG Processing 283/723 atomic regions from SNP 84826 to 85426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,617 DEBUG Processing 375/665 atomic regions from SNP 112473 to 113073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:58,739 DEBUG Processing 284/723 atomic regions from SNP 85126 to 85726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,848 DEBUG Processing 376/665 atomic regions from SNP 112773 to 113373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:58,973 DEBUG Processing 285/723 atomic regions from SNP 85426 to 86026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,083 DEBUG Processing 377/665 atomic regions from SNP 113073 to 113673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:59,216 DEBUG Processing 286/723 atomic regions from SNP 85726 to 86326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,321 DEBUG Processing 378/665 atomic regions from SNP 113373 to 113973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:59,455 DEBUG Processing 287/723 atomic regions from SNP 86026 to 86626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,557 DEBUG Processing 379/665 atomic regions from SNP 113673 to 114273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:59,693 DEBUG Processing 288/723 atomic regions from SNP 86326 to 86926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,799 DEBUG Processing 380/665 atomic regions from SNP 113973 to 114573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:54:59,933 DEBUG Processing 289/723 atomic regions from SNP 86626 to 87226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,061 DEBUG Processing 381/665 atomic regions from SNP 114273 to 114873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:00,173 DEBUG Processing 290/723 atomic regions from SNP 86926 to 87526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,295 DEBUG Processing 382/665 atomic regions from SNP 114573 to 115173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:00,410 DEBUG Processing 291/723 atomic regions from SNP 87226 to 87826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,522 DEBUG Processing 383/665 atomic regions from SNP 114873 to 115473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:00,642 DEBUG Processing 292/723 atomic regions from SNP 87526 to 88126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,759 DEBUG Processing 384/665 atomic regions from SNP 115173 to 115773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:00,878 DEBUG Processing 293/723 atomic regions from SNP 87826 to 88426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,019 DEBUG Processing 385/665 atomic regions from SNP 115473 to 116073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:01,116 DEBUG Processing 294/723 atomic regions from SNP 88126 to 88726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,260 DEBUG Processing 386/665 atomic regions from SNP 115773 to 116373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:01,344 DEBUG Processing 295/723 atomic regions from SNP 88426 to 89026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,522 DEBUG Processing 387/665 atomic regions from SNP 116073 to 116673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:01,570 DEBUG Processing 296/723 atomic regions from SNP 88726 to 89326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,771 DEBUG Processing 388/665 atomic regions from SNP 116373 to 116973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:01,803 DEBUG Processing 297/723 atomic regions from SNP 89026 to 89626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,024 DEBUG Processing 389/665 atomic regions from SNP 116673 to 117273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:02,036 DEBUG Processing 298/723 atomic regions from SNP 89326 to 89926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,184 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:55:02,271 DEBUG Processing 299/723 atomic regions from SNP 89626 to 90226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,276 DEBUG Processing 390/665 atomic regions from SNP 116973 to 117573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:02,512 DEBUG Processing 300/723 atomic regions from SNP 89926 to 90526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,512 DEBUG Processing 391/665 atomic regions from SNP 117273 to 117873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:02,749 DEBUG Processing 392/665 atomic regions from SNP 117573 to 118173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:02,755 DEBUG Processing 301/723 atomic regions from SNP 90226 to 90826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,984 DEBUG Processing 393/665 atomic regions from SNP 117873 to 118473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:02,995 DEBUG Processing 302/723 atomic regions from SNP 90526 to 91126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,218 DEBUG Processing 394/665 atomic regions from SNP 118173 to 118773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:03,230 DEBUG Processing 303/723 atomic regions from SNP 90826 to 91426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,443 DEBUG Processing 395/665 atomic regions from SNP 118473 to 119073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:03,471 DEBUG Processing 304/723 atomic regions from SNP 91126 to 91726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,668 DEBUG Processing 396/665 atomic regions from SNP 118773 to 119373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:03,729 DEBUG Processing 305/723 atomic regions from SNP 91426 to 92026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,885 DEBUG Processing 397/665 atomic regions from SNP 119073 to 119673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:03,993 DEBUG Processing 306/723 atomic regions from SNP 91726 to 92326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,110 DEBUG Processing 398/665 atomic regions from SNP 119373 to 119973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:04,234 DEBUG Processing 307/723 atomic regions from SNP 92026 to 92626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,326 DEBUG Processing 399/665 atomic regions from SNP 119673 to 120273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:04,470 DEBUG Processing 308/723 atomic regions from SNP 92326 to 92926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,550 DEBUG Processing 400/665 atomic regions from SNP 119973 to 120573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:04,703 DEBUG Processing 309/723 atomic regions from SNP 92626 to 93226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,773 DEBUG Processing 401/665 atomic regions from SNP 120273 to 120873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:04,928 DEBUG Processing 310/723 atomic regions from SNP 92926 to 93526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,996 DEBUG Processing 402/665 atomic regions from SNP 120573 to 121173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:05,153 DEBUG Processing 311/723 atomic regions from SNP 93226 to 93826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,233 DEBUG Processing 403/665 atomic regions from SNP 120873 to 121473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:05,389 DEBUG Processing 312/723 atomic regions from SNP 93526 to 94126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,455 DEBUG Processing 404/665 atomic regions from SNP 121173 to 121773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:05,630 DEBUG Processing 313/723 atomic regions from SNP 93826 to 94426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,676 DEBUG Processing 405/665 atomic regions from SNP 121473 to 122073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:05,868 DEBUG Processing 314/723 atomic regions from SNP 94126 to 94726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,914 DEBUG Processing 406/665 atomic regions from SNP 121773 to 122373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:06,105 DEBUG Processing 315/723 atomic regions from SNP 94426 to 95026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,167 DEBUG Processing 407/665 atomic regions from SNP 122073 to 122673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:06,336 DEBUG Processing 316/723 atomic regions from SNP 94726 to 95326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,424 DEBUG Processing 408/665 atomic regions from SNP 122373 to 122973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:06,581 DEBUG Processing 317/723 atomic regions from SNP 95026 to 95626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,655 DEBUG Processing 409/665 atomic regions from SNP 122673 to 123273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:06,831 DEBUG Processing 318/723 atomic regions from SNP 95326 to 95926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,876 DEBUG Processing 410/665 atomic regions from SNP 122973 to 123573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:07,089 DEBUG Processing 319/723 atomic regions from SNP 95626 to 96226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,101 DEBUG Processing 411/665 atomic regions from SNP 123273 to 123873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:07,337 DEBUG Processing 412/665 atomic regions from SNP 123573 to 124173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:07,362 DEBUG Processing 320/723 atomic regions from SNP 95926 to 96526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,565 DEBUG Processing 413/665 atomic regions from SNP 123873 to 124473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:07,617 DEBUG Processing 321/723 atomic regions from SNP 96226 to 96826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,796 DEBUG Processing 414/665 atomic regions from SNP 124173 to 124773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:07,861 DEBUG Processing 322/723 atomic regions from SNP 96526 to 97126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,033 DEBUG Processing 415/665 atomic regions from SNP 124473 to 125073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:08,125 DEBUG Processing 323/723 atomic regions from SNP 96826 to 97426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,257 DEBUG Processing 416/665 atomic regions from SNP 124773 to 125373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:08,404 DEBUG Processing 324/723 atomic regions from SNP 97126 to 97726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,473 DEBUG Processing 417/665 atomic regions from SNP 125073 to 125673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:08,667 DEBUG Processing 325/723 atomic regions from SNP 97426 to 98026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,689 DEBUG Processing 418/665 atomic regions from SNP 125373 to 125973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:08,920 DEBUG Processing 419/665 atomic regions from SNP 125673 to 126273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:08,927 DEBUG Processing 326/723 atomic regions from SNP 97726 to 98326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,140 DEBUG Processing 420/665 atomic regions from SNP 125973 to 126573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:09,198 DEBUG Processing 327/723 atomic regions from SNP 98026 to 98626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,365 DEBUG Processing 421/665 atomic regions from SNP 126273 to 126873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:09,473 DEBUG Processing 328/723 atomic regions from SNP 98326 to 98926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,617 DEBUG Processing 422/665 atomic regions from SNP 126573 to 127173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:09,733 DEBUG Processing 329/723 atomic regions from SNP 98626 to 99226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,847 DEBUG Processing 423/665 atomic regions from SNP 126873 to 127473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:09,997 DEBUG Processing 330/723 atomic regions from SNP 98926 to 99526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,081 DEBUG Processing 424/665 atomic regions from SNP 127173 to 127773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:10,258 DEBUG Processing 331/723 atomic regions from SNP 99226 to 99826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,315 DEBUG Processing 425/665 atomic regions from SNP 127473 to 128073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:10,511 DEBUG Processing 332/723 atomic regions from SNP 99526 to 100126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,549 DEBUG Processing 426/665 atomic regions from SNP 127773 to 128373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:10,761 DEBUG Processing 333/723 atomic regions from SNP 99826 to 100426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,783 DEBUG Processing 427/665 atomic regions from SNP 128073 to 128673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:11,018 DEBUG Processing 428/665 atomic regions from SNP 128373 to 128973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:11,021 DEBUG Processing 334/723 atomic regions from SNP 100126 to 100726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,253 DEBUG Processing 429/665 atomic regions from SNP 128673 to 129273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:11,258 DEBUG Processing 335/723 atomic regions from SNP 100426 to 101026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,484 DEBUG Processing 430/665 atomic regions from SNP 128973 to 129573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:11,512 DEBUG Processing 336/723 atomic regions from SNP 100726 to 101326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,720 DEBUG Processing 431/665 atomic regions from SNP 129273 to 129873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:11,770 DEBUG Processing 337/723 atomic regions from SNP 101026 to 101626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,952 DEBUG Processing 432/665 atomic regions from SNP 129573 to 130173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:11,993 DEBUG Processing 338/723 atomic regions from SNP 101326 to 101926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,185 DEBUG Processing 433/665 atomic regions from SNP 129873 to 130473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:12,216 DEBUG Processing 339/723 atomic regions from SNP 101626 to 102226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,417 DEBUG Processing 434/665 atomic regions from SNP 130173 to 130773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:12,440 DEBUG Processing 340/723 atomic regions from SNP 101926 to 102526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,645 DEBUG Processing 435/665 atomic regions from SNP 130473 to 131073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:12,664 DEBUG Processing 341/723 atomic regions from SNP 102226 to 102826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,877 DEBUG Processing 436/665 atomic regions from SNP 130773 to 131373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:12,894 DEBUG Processing 342/723 atomic regions from SNP 102526 to 103126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,104 DEBUG Processing 437/665 atomic regions from SNP 131073 to 131673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:13,118 DEBUG Processing 343/723 atomic regions from SNP 102826 to 103426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,331 DEBUG Processing 438/665 atomic regions from SNP 131373 to 131973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:13,342 DEBUG Processing 344/723 atomic regions from SNP 103126 to 103726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,558 DEBUG Processing 439/665 atomic regions from SNP 131673 to 132273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:13,575 DEBUG Processing 345/723 atomic regions from SNP 103426 to 104026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,778 DEBUG Processing 440/665 atomic regions from SNP 131973 to 132573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:13,812 DEBUG Processing 346/723 atomic regions from SNP 103726 to 104326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,002 DEBUG Processing 441/665 atomic regions from SNP 132273 to 132873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:14,077 DEBUG Processing 347/723 atomic regions from SNP 104026 to 104626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,225 DEBUG Processing 442/665 atomic regions from SNP 132573 to 133173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:14,326 DEBUG Processing 348/723 atomic regions from SNP 104326 to 104926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,451 DEBUG Processing 443/665 atomic regions from SNP 132873 to 133473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:14,560 DEBUG Processing 349/723 atomic regions from SNP 104626 to 105226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,676 DEBUG Processing 444/665 atomic regions from SNP 133173 to 133773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:14,798 DEBUG Processing 350/723 atomic regions from SNP 104926 to 105526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,899 DEBUG Processing 445/665 atomic regions from SNP 133473 to 134073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:15,075 DEBUG Processing 351/723 atomic regions from SNP 105226 to 105826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,119 DEBUG Processing 446/665 atomic regions from SNP 133773 to 134373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:15,338 DEBUG Processing 352/723 atomic regions from SNP 105526 to 106126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,346 DEBUG Processing 447/665 atomic regions from SNP 134073 to 134673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:15,586 DEBUG Processing 448/665 atomic regions from SNP 134373 to 134973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:15,602 DEBUG Processing 353/723 atomic regions from SNP 105826 to 106426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,807 DEBUG Processing 449/665 atomic regions from SNP 134673 to 135273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:15,850 DEBUG Processing 354/723 atomic regions from SNP 106126 to 106726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,032 DEBUG Processing 450/665 atomic regions from SNP 134973 to 135573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:16,086 DEBUG Processing 355/723 atomic regions from SNP 106426 to 107026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,257 DEBUG Processing 451/665 atomic regions from SNP 135273 to 135873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:16,327 DEBUG Processing 356/723 atomic regions from SNP 106726 to 107326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,491 DEBUG Processing 452/665 atomic regions from SNP 135573 to 136173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:16,576 DEBUG Processing 357/723 atomic regions from SNP 107026 to 107626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,724 DEBUG Processing 453/665 atomic regions from SNP 135873 to 136473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:16,813 DEBUG Processing 358/723 atomic regions from SNP 107326 to 107926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,959 DEBUG Processing 454/665 atomic regions from SNP 136173 to 136773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:17,049 DEBUG Processing 359/723 atomic regions from SNP 107626 to 108226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,191 DEBUG Processing 455/665 atomic regions from SNP 136473 to 137073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:17,265 DEBUG Processing 360/723 atomic regions from SNP 107926 to 108526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,430 DEBUG Processing 456/665 atomic regions from SNP 136773 to 137373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:17,495 DEBUG Processing 361/723 atomic regions from SNP 108226 to 108826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,677 DEBUG Processing 457/665 atomic regions from SNP 137073 to 137673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:17,743 DEBUG Processing 362/723 atomic regions from SNP 108526 to 109126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,917 DEBUG Processing 458/665 atomic regions from SNP 137373 to 137973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:17,989 DEBUG Processing 363/723 atomic regions from SNP 108826 to 109426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,157 DEBUG Processing 459/665 atomic regions from SNP 137673 to 138273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:18,231 DEBUG Processing 364/723 atomic regions from SNP 109126 to 109726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,393 DEBUG Processing 460/665 atomic regions from SNP 137973 to 138573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:18,477 DEBUG Processing 365/723 atomic regions from SNP 109426 to 110026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,556 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:55:18,558 DEBUG chr13: Signal quantile: 0.987. signal threshold: 12. Best RMSEA: 0.010 2025-01-31 09:55:18,626 DEBUG Processing 461/665 atomic regions from SNP 138273 to 138873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:18,728 DEBUG Processing 366/723 atomic regions from SNP 109726 to 110326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,865 DEBUG Processing 462/665 atomic regions from SNP 138573 to 139173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:18,973 DEBUG Processing 367/723 atomic regions from SNP 110026 to 110626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,095 DEBUG Processing 463/665 atomic regions from SNP 138873 to 139473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:19,222 DEBUG Processing 368/723 atomic regions from SNP 110326 to 110926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,331 DEBUG Processing 464/665 atomic regions from SNP 139173 to 139773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:19,483 DEBUG Processing 369/723 atomic regions from SNP 110626 to 111226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,582 DEBUG Processing 465/665 atomic regions from SNP 139473 to 140073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:19,743 DEBUG Processing 370/723 atomic regions from SNP 110926 to 111526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,824 DEBUG Processing 466/665 atomic regions from SNP 139773 to 140373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:20,001 DEBUG Processing 371/723 atomic regions from SNP 111226 to 111826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,071 DEBUG Processing 467/665 atomic regions from SNP 140073 to 140673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:20,259 DEBUG Processing 372/723 atomic regions from SNP 111526 to 112126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,308 DEBUG Processing 468/665 atomic regions from SNP 140373 to 140973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:20,507 DEBUG Processing 373/723 atomic regions from SNP 111826 to 112426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,545 DEBUG Processing 469/665 atomic regions from SNP 140673 to 141273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:20,651 DEBUG Segmenting atomic regions: 2025-01-31 09:55:20,748 DEBUG Processing 1/705 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,775 DEBUG Processing 374/723 atomic regions from SNP 112126 to 112726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,781 DEBUG Processing 470/665 atomic regions from SNP 140973 to 141573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:20,814 DEBUG chr13 total SNP count: 202949 2025-01-31 09:55:20,814 DEBUG chr13 length: 120421639 2025-01-31 09:55:20,814 DEBUG ----------------------------------------- 2025-01-31 09:55:20,814 INFO Processing SNPs in chr13 2025-01-31 09:55:21,010 DEBUG Processing 2/705 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,023 DEBUG Processing 471/665 atomic regions from SNP 141273 to 141873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:21,026 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 202949)] 2025-01-31 09:55:21,034 DEBUG Processing 375/723 atomic regions from SNP 112426 to 113026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,180 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:21,271 DEBUG Processing 472/665 atomic regions from SNP 141573 to 142173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:21,273 DEBUG Processing 3/705 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,299 DEBUG Processing 376/723 atomic regions from SNP 112726 to 113326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,508 DEBUG Processing 473/665 atomic regions from SNP 141873 to 142473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:21,523 DEBUG Processing 4/705 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,548 DEBUG Processing 377/723 atomic regions from SNP 113026 to 113626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,743 DEBUG Processing 474/665 atomic regions from SNP 142173 to 142773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:21,760 DEBUG Processing 5/705 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,810 DEBUG Processing 378/723 atomic regions from SNP 113326 to 113926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,980 DEBUG Processing 475/665 atomic regions from SNP 142473 to 143073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:22,007 DEBUG Processing 6/705 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,059 DEBUG Processing 379/723 atomic regions from SNP 113626 to 114226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,218 DEBUG Processing 476/665 atomic regions from SNP 142773 to 143373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:22,263 DEBUG Processing 7/705 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,296 DEBUG Processing 380/723 atomic regions from SNP 113926 to 114526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,457 DEBUG Processing 477/665 atomic regions from SNP 143073 to 143673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:22,518 DEBUG Processing 8/705 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,547 DEBUG Processing 381/723 atomic regions from SNP 114226 to 114826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,697 DEBUG Processing 478/665 atomic regions from SNP 143373 to 143973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:22,739 DEBUG Processing 9/705 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,780 DEBUG Processing 382/723 atomic regions from SNP 114526 to 115126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,936 DEBUG Processing 479/665 atomic regions from SNP 143673 to 144273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:22,968 DEBUG Processing 10/705 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,034 DEBUG Processing 383/723 atomic regions from SNP 114826 to 115426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,180 DEBUG Processing 480/665 atomic regions from SNP 143973 to 144573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:23,223 DEBUG Processing 11/705 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,283 DEBUG Processing 384/723 atomic regions from SNP 115126 to 115726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,423 DEBUG Processing 481/665 atomic regions from SNP 144273 to 144873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:23,476 DEBUG Processing 12/705 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,513 DEBUG Processing 385/723 atomic regions from SNP 115426 to 116026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,665 DEBUG Processing 482/665 atomic regions from SNP 144573 to 145173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:23,734 DEBUG Processing 13/705 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,745 DEBUG Processing 386/723 atomic regions from SNP 115726 to 116326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,912 DEBUG Processing 483/665 atomic regions from SNP 144873 to 145473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:23,971 DEBUG Processing 14/705 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,977 DEBUG Processing 387/723 atomic regions from SNP 116026 to 116626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,153 DEBUG Processing 484/665 atomic regions from SNP 145173 to 145773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:24,201 DEBUG Processing 15/705 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,222 DEBUG Processing 388/723 atomic regions from SNP 116326 to 116926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,393 DEBUG Processing 485/665 atomic regions from SNP 145473 to 146073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:24,444 DEBUG Processing 16/705 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,460 DEBUG Processing 389/723 atomic regions from SNP 116626 to 117226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,630 DEBUG Processing 486/665 atomic regions from SNP 145773 to 146373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:24,675 DEBUG Processing 17/705 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,682 DEBUG Processing 390/723 atomic regions from SNP 116926 to 117526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,861 DEBUG Processing 487/665 atomic regions from SNP 146073 to 146673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:24,906 DEBUG Processing 391/723 atomic regions from SNP 117226 to 117826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,925 DEBUG Processing 18/705 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,090 DEBUG Processing 488/665 atomic regions from SNP 146373 to 146973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:25,136 DEBUG Processing 392/723 atomic regions from SNP 117526 to 118126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,180 DEBUG Processing 19/705 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,317 DEBUG Processing 489/665 atomic regions from SNP 146673 to 147273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:25,368 DEBUG Processing 393/723 atomic regions from SNP 117826 to 118426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,426 DEBUG Processing 20/705 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,557 DEBUG Processing 490/665 atomic regions from SNP 146973 to 147573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:25,610 DEBUG Processing 394/723 atomic regions from SNP 118126 to 118726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,686 DEBUG Processing 21/705 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,801 DEBUG Processing 491/665 atomic regions from SNP 147273 to 147873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:25,850 DEBUG Processing 395/723 atomic regions from SNP 118426 to 119026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,953 DEBUG Processing 22/705 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,035 DEBUG Processing 492/665 atomic regions from SNP 147573 to 148173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:26,079 DEBUG Processing 396/723 atomic regions from SNP 118726 to 119326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,182 DEBUG Processing 23/705 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,267 DEBUG Processing 493/665 atomic regions from SNP 147873 to 148473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:26,292 DEBUG Processing 397/723 atomic regions from SNP 119026 to 119626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,397 DEBUG Processing 24/705 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,496 DEBUG Processing 494/665 atomic regions from SNP 148173 to 148773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:26,506 DEBUG Processing 398/723 atomic regions from SNP 119326 to 119926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,612 DEBUG Processing 25/705 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,724 DEBUG Processing 399/723 atomic regions from SNP 119626 to 120226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,728 DEBUG Processing 495/665 atomic regions from SNP 148473 to 149073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:26,825 DEBUG Processing 26/705 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,942 DEBUG Processing 400/723 atomic regions from SNP 119926 to 120526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,957 DEBUG Processing 496/665 atomic regions from SNP 148773 to 149373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:27,035 DEBUG Processing 27/705 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,161 DEBUG Processing 401/723 atomic regions from SNP 120226 to 120826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,185 DEBUG Processing 497/665 atomic regions from SNP 149073 to 149673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:27,254 DEBUG Processing 28/705 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,388 DEBUG Processing 402/723 atomic regions from SNP 120526 to 121126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,440 DEBUG Processing 498/665 atomic regions from SNP 149373 to 149973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:27,484 DEBUG Processing 29/705 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,606 DEBUG Processing 403/723 atomic regions from SNP 120826 to 121426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,672 DEBUG Processing 499/665 atomic regions from SNP 149673 to 150273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:27,706 DEBUG Processing 30/705 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,825 DEBUG Processing 404/723 atomic regions from SNP 121126 to 121726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,898 DEBUG Processing 500/665 atomic regions from SNP 149973 to 150573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:27,923 DEBUG Processing 31/705 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,055 DEBUG Processing 405/723 atomic regions from SNP 121426 to 122026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,130 DEBUG Processing 501/665 atomic regions from SNP 150273 to 150873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:28,145 DEBUG Processing 32/705 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,300 DEBUG Processing 406/723 atomic regions from SNP 121726 to 122326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,368 DEBUG Processing 502/665 atomic regions from SNP 150573 to 151173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:28,379 DEBUG Processing 33/705 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,539 DEBUG Processing 407/723 atomic regions from SNP 122026 to 122626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,596 DEBUG Processing 503/665 atomic regions from SNP 150873 to 151473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:28,604 DEBUG Processing 34/705 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,770 DEBUG Processing 408/723 atomic regions from SNP 122326 to 122926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,823 DEBUG Processing 504/665 atomic regions from SNP 151173 to 151773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:28,830 DEBUG Processing 35/705 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,005 DEBUG Processing 409/723 atomic regions from SNP 122626 to 123226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,045 DEBUG Processing 505/665 atomic regions from SNP 151473 to 152073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:29,057 DEBUG Processing 36/705 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,241 DEBUG Processing 410/723 atomic regions from SNP 122926 to 123526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,261 DEBUG Processing 506/665 atomic regions from SNP 151773 to 152373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:29,282 DEBUG Processing 37/705 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,477 DEBUG Processing 411/723 atomic regions from SNP 123226 to 123826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,480 DEBUG Processing 507/665 atomic regions from SNP 152073 to 152673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:29,508 DEBUG Processing 38/705 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,703 DEBUG Processing 508/665 atomic regions from SNP 152373 to 152973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:29,727 DEBUG Processing 412/723 atomic regions from SNP 123526 to 124126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,741 DEBUG Processing 39/705 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,940 DEBUG Processing 509/665 atomic regions from SNP 152673 to 153273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:29,962 DEBUG Processing 413/723 atomic regions from SNP 123826 to 124426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,974 DEBUG Processing 40/705 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,177 DEBUG Processing 510/665 atomic regions from SNP 152973 to 153573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:30,193 DEBUG Processing 414/723 atomic regions from SNP 124126 to 124726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,207 DEBUG Processing 41/705 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,411 DEBUG Processing 511/665 atomic regions from SNP 153273 to 153873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:30,427 DEBUG Processing 415/723 atomic regions from SNP 124426 to 125026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,442 DEBUG Processing 42/705 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,646 DEBUG Processing 512/665 atomic regions from SNP 153573 to 154173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:30,668 DEBUG Processing 416/723 atomic regions from SNP 124726 to 125326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,676 DEBUG Processing 43/705 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,878 DEBUG Processing 513/665 atomic regions from SNP 153873 to 154473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:30,914 DEBUG Processing 44/705 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,930 DEBUG Processing 417/723 atomic regions from SNP 125026 to 125626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,114 DEBUG Processing 514/665 atomic regions from SNP 154173 to 154773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:31,154 DEBUG Processing 45/705 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,191 DEBUG Processing 418/723 atomic regions from SNP 125326 to 125926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,353 DEBUG Processing 515/665 atomic regions from SNP 154473 to 155073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:31,395 DEBUG Processing 46/705 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,445 DEBUG Processing 419/723 atomic regions from SNP 125626 to 126226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,591 DEBUG Processing 516/665 atomic regions from SNP 154773 to 155373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:31,634 DEBUG Processing 47/705 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,689 DEBUG Processing 420/723 atomic regions from SNP 125926 to 126526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,824 DEBUG Processing 517/665 atomic regions from SNP 155073 to 155673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:31,879 DEBUG Processing 48/705 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,935 DEBUG Processing 421/723 atomic regions from SNP 126226 to 126826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,058 DEBUG Processing 518/665 atomic regions from SNP 155373 to 155973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:32,113 DEBUG Processing 49/705 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,170 DEBUG Processing 422/723 atomic regions from SNP 126526 to 127126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,288 DEBUG Processing 519/665 atomic regions from SNP 155673 to 156273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:32,352 DEBUG Processing 50/705 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,409 DEBUG Processing 423/723 atomic regions from SNP 126826 to 127426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,523 DEBUG Processing 520/665 atomic regions from SNP 155973 to 156573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:32,597 DEBUG Processing 51/705 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,648 DEBUG Processing 424/723 atomic regions from SNP 127126 to 127726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,751 DEBUG Processing 521/665 atomic regions from SNP 156273 to 156873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:32,826 DEBUG Processing 52/705 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,888 DEBUG Processing 425/723 atomic regions from SNP 127426 to 128026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,989 DEBUG Processing 522/665 atomic regions from SNP 156573 to 157173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:33,049 DEBUG Processing 53/705 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,133 DEBUG Processing 426/723 atomic regions from SNP 127726 to 128326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,234 DEBUG Processing 523/665 atomic regions from SNP 156873 to 157473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:33,275 DEBUG Processing 54/705 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,365 DEBUG Processing 427/723 atomic regions from SNP 128026 to 128626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,476 DEBUG Processing 524/665 atomic regions from SNP 157173 to 157773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:33,500 DEBUG Processing 55/705 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,588 DEBUG Processing 428/723 atomic regions from SNP 128326 to 128926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,720 DEBUG Processing 525/665 atomic regions from SNP 157473 to 158073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:33,731 DEBUG Processing 56/705 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,812 DEBUG Processing 429/723 atomic regions from SNP 128626 to 129226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,967 DEBUG Processing 526/665 atomic regions from SNP 157773 to 158373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:33,972 DEBUG Processing 57/705 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,043 DEBUG Processing 430/723 atomic regions from SNP 128926 to 129526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,198 DEBUG Processing 58/705 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,212 DEBUG Processing 527/665 atomic regions from SNP 158073 to 158673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:34,267 DEBUG Processing 431/723 atomic regions from SNP 129226 to 129826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,425 DEBUG Processing 59/705 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,456 DEBUG Processing 528/665 atomic regions from SNP 158373 to 158973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:34,503 DEBUG Processing 432/723 atomic regions from SNP 129526 to 130126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,657 DEBUG Processing 60/705 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,699 DEBUG Processing 529/665 atomic regions from SNP 158673 to 159273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:34,743 DEBUG Processing 433/723 atomic regions from SNP 129826 to 130426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,877 DEBUG Processing 61/705 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,929 DEBUG Processing 530/665 atomic regions from SNP 158973 to 159573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:34,991 DEBUG Processing 434/723 atomic regions from SNP 130126 to 130726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,100 DEBUG Processing 62/705 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,164 DEBUG Processing 531/665 atomic regions from SNP 159273 to 159873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:35,243 DEBUG Processing 435/723 atomic regions from SNP 130426 to 131026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,329 DEBUG Processing 63/705 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,403 DEBUG Processing 532/665 atomic regions from SNP 159573 to 160173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:35,481 DEBUG Processing 436/723 atomic regions from SNP 130726 to 131326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,561 DEBUG Processing 64/705 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,627 DEBUG Processing 533/665 atomic regions from SNP 159873 to 160473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:35,707 DEBUG Processing 437/723 atomic regions from SNP 131026 to 131626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,801 DEBUG Processing 65/705 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,854 DEBUG Processing 534/665 atomic regions from SNP 160173 to 160773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:35,919 DEBUG Processing 438/723 atomic regions from SNP 131326 to 131926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,033 DEBUG Processing 66/705 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,083 DEBUG Processing 535/665 atomic regions from SNP 160473 to 161073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:36,132 DEBUG Processing 439/723 atomic regions from SNP 131626 to 132226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,272 DEBUG Processing 67/705 atomic regions from SNP 19866 to 20466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,321 DEBUG Processing 536/665 atomic regions from SNP 160773 to 161373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:36,355 DEBUG Processing 440/723 atomic regions from SNP 131926 to 132526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,515 DEBUG Processing 68/705 atomic regions from SNP 20166 to 20766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,568 DEBUG Processing 537/665 atomic regions from SNP 161073 to 161673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:36,582 DEBUG Processing 441/723 atomic regions from SNP 132226 to 132826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,756 DEBUG Processing 69/705 atomic regions from SNP 20466 to 21066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,804 DEBUG Processing 538/665 atomic regions from SNP 161373 to 161973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:36,811 DEBUG Processing 442/723 atomic regions from SNP 132526 to 133126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,989 DEBUG Processing 70/705 atomic regions from SNP 20766 to 21366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,040 DEBUG Processing 443/723 atomic regions from SNP 132826 to 133426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,043 DEBUG Processing 539/665 atomic regions from SNP 161673 to 162273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:37,219 DEBUG Processing 71/705 atomic regions from SNP 21066 to 21666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,272 DEBUG Processing 444/723 atomic regions from SNP 133126 to 133726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,278 DEBUG Processing 540/665 atomic regions from SNP 161973 to 162573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:37,443 DEBUG Processing 72/705 atomic regions from SNP 21366 to 21966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,497 DEBUG Processing 445/723 atomic regions from SNP 133426 to 134026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,521 DEBUG Processing 541/665 atomic regions from SNP 162273 to 162873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:37,669 DEBUG Processing 73/705 atomic regions from SNP 21666 to 22266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,722 DEBUG Processing 446/723 atomic regions from SNP 133726 to 134326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,776 DEBUG Processing 542/665 atomic regions from SNP 162573 to 163173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:37,888 DEBUG Processing 74/705 atomic regions from SNP 21966 to 22566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,948 DEBUG Processing 447/723 atomic regions from SNP 134026 to 134626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,006 DEBUG Processing 543/665 atomic regions from SNP 162873 to 163473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:38,106 DEBUG Processing 75/705 atomic regions from SNP 22266 to 22866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,174 DEBUG Processing 448/723 atomic regions from SNP 134326 to 134926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,242 DEBUG Processing 544/665 atomic regions from SNP 163173 to 163773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:38,316 DEBUG Processing 76/705 atomic regions from SNP 22566 to 23166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,405 DEBUG Processing 449/723 atomic regions from SNP 134626 to 135226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,478 DEBUG Processing 545/665 atomic regions from SNP 163473 to 164073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:38,523 DEBUG Processing 77/705 atomic regions from SNP 22866 to 23466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,648 DEBUG Processing 450/723 atomic regions from SNP 134926 to 135526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,716 DEBUG Processing 546/665 atomic regions from SNP 163773 to 164373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:38,740 DEBUG Processing 78/705 atomic regions from SNP 23166 to 23766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,899 DEBUG Processing 451/723 atomic regions from SNP 135226 to 135826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,961 DEBUG Processing 79/705 atomic regions from SNP 23466 to 24066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,961 DEBUG Processing 547/665 atomic regions from SNP 164073 to 164673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:39,145 DEBUG Processing 452/723 atomic regions from SNP 135526 to 136126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,192 DEBUG Processing 80/705 atomic regions from SNP 23766 to 24366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,212 DEBUG Processing 548/665 atomic regions from SNP 164373 to 164973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:39,389 DEBUG Processing 453/723 atomic regions from SNP 135826 to 136426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,411 DEBUG Processing 81/705 atomic regions from SNP 24066 to 24666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,447 DEBUG Processing 549/665 atomic regions from SNP 164673 to 165273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:39,620 DEBUG Processing 454/723 atomic regions from SNP 136126 to 136726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,635 DEBUG Processing 82/705 atomic regions from SNP 24366 to 24966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,678 DEBUG Processing 550/665 atomic regions from SNP 164973 to 165573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:39,845 DEBUG Processing 455/723 atomic regions from SNP 136426 to 137026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,866 DEBUG Processing 83/705 atomic regions from SNP 24666 to 25266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,909 DEBUG Processing 551/665 atomic regions from SNP 165273 to 165873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:40,075 DEBUG Processing 456/723 atomic regions from SNP 136726 to 137326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,097 DEBUG Processing 84/705 atomic regions from SNP 24966 to 25566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,138 DEBUG Processing 552/665 atomic regions from SNP 165573 to 166173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:40,310 DEBUG Processing 457/723 atomic regions from SNP 137026 to 137626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,330 DEBUG Processing 85/705 atomic regions from SNP 25266 to 25866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,378 DEBUG Processing 553/665 atomic regions from SNP 165873 to 166473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:40,543 DEBUG Processing 458/723 atomic regions from SNP 137326 to 137926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,566 DEBUG Processing 86/705 atomic regions from SNP 25566 to 26166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,613 DEBUG Processing 554/665 atomic regions from SNP 166173 to 166773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:40,771 DEBUG Processing 459/723 atomic regions from SNP 137626 to 138226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,801 DEBUG Processing 87/705 atomic regions from SNP 25866 to 26466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,851 DEBUG Processing 555/665 atomic regions from SNP 166473 to 167073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:40,999 DEBUG Processing 460/723 atomic regions from SNP 137926 to 138526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,044 DEBUG Processing 88/705 atomic regions from SNP 26166 to 26766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,090 DEBUG Processing 556/665 atomic regions from SNP 166773 to 167373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:41,233 DEBUG Processing 461/723 atomic regions from SNP 138226 to 138826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,282 DEBUG Processing 89/705 atomic regions from SNP 26466 to 27066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,328 DEBUG Processing 557/665 atomic regions from SNP 167073 to 167673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:41,454 DEBUG Processing 462/723 atomic regions from SNP 138526 to 139126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,509 DEBUG Processing 90/705 atomic regions from SNP 26766 to 27366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,562 DEBUG Processing 558/665 atomic regions from SNP 167373 to 167973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:41,673 DEBUG Processing 463/723 atomic regions from SNP 138826 to 139426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,729 DEBUG Processing 91/705 atomic regions from SNP 27066 to 27666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,802 DEBUG Processing 559/665 atomic regions from SNP 167673 to 168273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:41,902 DEBUG Processing 464/723 atomic regions from SNP 139126 to 139726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,955 DEBUG Processing 92/705 atomic regions from SNP 27366 to 27966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,039 DEBUG Processing 560/665 atomic regions from SNP 167973 to 168573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:42,130 DEBUG Processing 465/723 atomic regions from SNP 139426 to 140026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,178 DEBUG Processing 93/705 atomic regions from SNP 27666 to 28266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,286 DEBUG Processing 561/665 atomic regions from SNP 168273 to 168873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:42,362 DEBUG Processing 466/723 atomic regions from SNP 139726 to 140326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,397 DEBUG Processing 94/705 atomic regions from SNP 27966 to 28566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,519 DEBUG Processing 562/665 atomic regions from SNP 168573 to 169173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:42,592 DEBUG Processing 467/723 atomic regions from SNP 140026 to 140626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,618 DEBUG Processing 95/705 atomic regions from SNP 28266 to 28866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,750 DEBUG Processing 563/665 atomic regions from SNP 168873 to 169473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:42,824 DEBUG Processing 468/723 atomic regions from SNP 140326 to 140926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,857 DEBUG Processing 96/705 atomic regions from SNP 28566 to 29166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,014 DEBUG Processing 564/665 atomic regions from SNP 169173 to 169773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:43,062 DEBUG Processing 469/723 atomic regions from SNP 140626 to 141226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,085 DEBUG Processing 97/705 atomic regions from SNP 28866 to 29466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,243 DEBUG Processing 565/665 atomic regions from SNP 169473 to 170073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:43,293 DEBUG Processing 470/723 atomic regions from SNP 140926 to 141526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,317 DEBUG Processing 98/705 atomic regions from SNP 29166 to 29766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,475 DEBUG Processing 566/665 atomic regions from SNP 169773 to 170373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:43,525 DEBUG Processing 471/723 atomic regions from SNP 141226 to 141826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,552 DEBUG Processing 99/705 atomic regions from SNP 29466 to 30066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,702 DEBUG Processing 567/665 atomic regions from SNP 170073 to 170673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:43,749 DEBUG Processing 472/723 atomic regions from SNP 141526 to 142126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,784 DEBUG Processing 100/705 atomic regions from SNP 29766 to 30366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,933 DEBUG Processing 568/665 atomic regions from SNP 170373 to 170973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:43,975 DEBUG Processing 473/723 atomic regions from SNP 141826 to 142426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,008 DEBUG Processing 101/705 atomic regions from SNP 30066 to 30666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,170 DEBUG Processing 569/665 atomic regions from SNP 170673 to 171273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:44,205 DEBUG Processing 474/723 atomic regions from SNP 142126 to 142726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,237 DEBUG Processing 102/705 atomic regions from SNP 30366 to 30966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,407 DEBUG Processing 570/665 atomic regions from SNP 170973 to 171573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:44,435 DEBUG Processing 475/723 atomic regions from SNP 142426 to 143026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,460 DEBUG Processing 103/705 atomic regions from SNP 30666 to 31266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,648 DEBUG Processing 571/665 atomic regions from SNP 171273 to 171873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:44,690 DEBUG Processing 104/705 atomic regions from SNP 30966 to 31566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,694 DEBUG Processing 476/723 atomic regions from SNP 142726 to 143326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,886 DEBUG Processing 572/665 atomic regions from SNP 171573 to 172173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:44,910 DEBUG Processing 105/705 atomic regions from SNP 31266 to 31866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,920 DEBUG Processing 477/723 atomic regions from SNP 143026 to 143626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,111 DEBUG Processing 573/665 atomic regions from SNP 171873 to 172473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:45,118 DEBUG Processing 106/705 atomic regions from SNP 31566 to 32166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,134 DEBUG Processing 478/723 atomic regions from SNP 143326 to 143926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,323 DEBUG Processing 107/705 atomic regions from SNP 31866 to 32466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,340 DEBUG Processing 574/665 atomic regions from SNP 172173 to 172773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:45,347 DEBUG Processing 479/723 atomic regions from SNP 143626 to 144226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,531 DEBUG Processing 108/705 atomic regions from SNP 32166 to 32766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,560 DEBUG Processing 480/723 atomic regions from SNP 143926 to 144526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,568 DEBUG Processing 575/665 atomic regions from SNP 172473 to 173073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:45,745 DEBUG Processing 109/705 atomic regions from SNP 32466 to 33066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,780 DEBUG Processing 481/723 atomic regions from SNP 144226 to 144826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,797 DEBUG Processing 576/665 atomic regions from SNP 172773 to 173373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:45,962 DEBUG Processing 110/705 atomic regions from SNP 32766 to 33366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,007 DEBUG Processing 482/723 atomic regions from SNP 144526 to 145126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,026 DEBUG Processing 577/665 atomic regions from SNP 173073 to 173673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:46,177 DEBUG Processing 111/705 atomic regions from SNP 33066 to 33666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,230 DEBUG Processing 483/723 atomic regions from SNP 144826 to 145426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,255 DEBUG Processing 578/665 atomic regions from SNP 173373 to 173973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:46,282 DEBUG Segmenting atomic regions: 2025-01-31 09:55:46,372 DEBUG Processing 1/675 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,396 DEBUG Processing 112/705 atomic regions from SNP 33366 to 33966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,466 DEBUG Processing 484/723 atomic regions from SNP 145126 to 145726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,493 DEBUG Processing 579/665 atomic regions from SNP 173673 to 174273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:46,582 DEBUG Processing 2/675 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,630 DEBUG Processing 113/705 atomic regions from SNP 33666 to 34266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,693 DEBUG Processing 485/723 atomic regions from SNP 145426 to 146026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,735 DEBUG Processing 580/665 atomic regions from SNP 173973 to 174573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:46,802 DEBUG Processing 3/675 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,814 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:55:46,881 DEBUG Processing 114/705 atomic regions from SNP 33966 to 34566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,930 DEBUG Processing 486/723 atomic regions from SNP 145726 to 146326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,982 DEBUG Processing 581/665 atomic regions from SNP 174273 to 174873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:47,041 DEBUG Processing 4/675 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,110 DEBUG Processing 115/705 atomic regions from SNP 34266 to 34866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,159 DEBUG Processing 487/723 atomic regions from SNP 146026 to 146626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,222 DEBUG Processing 582/665 atomic regions from SNP 174573 to 175173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:47,265 DEBUG Processing 5/675 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,333 DEBUG Processing 116/705 atomic regions from SNP 34566 to 35166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,393 DEBUG Processing 488/723 atomic regions from SNP 146326 to 146926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,459 DEBUG Processing 583/665 atomic regions from SNP 174873 to 175473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:47,487 DEBUG Processing 6/675 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,556 DEBUG Processing 117/705 atomic regions from SNP 34866 to 35466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,624 DEBUG Processing 489/723 atomic regions from SNP 146626 to 147226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,688 DEBUG Processing 584/665 atomic regions from SNP 175173 to 175773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:47,708 DEBUG Processing 7/675 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,776 DEBUG Processing 118/705 atomic regions from SNP 35166 to 35766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,852 DEBUG Processing 490/723 atomic regions from SNP 146926 to 147526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,917 DEBUG Processing 585/665 atomic regions from SNP 175473 to 176073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:47,933 DEBUG Processing 8/675 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,999 DEBUG Processing 119/705 atomic regions from SNP 35466 to 36066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,079 DEBUG Processing 491/723 atomic regions from SNP 147226 to 147826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,149 DEBUG Processing 586/665 atomic regions from SNP 175773 to 176373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:48,163 DEBUG Processing 9/675 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,222 DEBUG Processing 120/705 atomic regions from SNP 35766 to 36366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,302 DEBUG Processing 492/723 atomic regions from SNP 147526 to 148126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,392 DEBUG Processing 587/665 atomic regions from SNP 176073 to 176673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:48,398 DEBUG Processing 10/675 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,450 DEBUG Processing 121/705 atomic regions from SNP 36066 to 36666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,521 DEBUG Processing 493/723 atomic regions from SNP 147826 to 148426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,622 DEBUG Processing 588/665 atomic regions from SNP 176373 to 176973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:48,630 DEBUG Processing 11/675 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,673 DEBUG Processing 122/705 atomic regions from SNP 36366 to 36966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,742 DEBUG Processing 494/723 atomic regions from SNP 148126 to 148726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,853 DEBUG Processing 589/665 atomic regions from SNP 176673 to 177273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:48,858 DEBUG Processing 12/675 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,901 DEBUG Processing 123/705 atomic regions from SNP 36666 to 37266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,965 DEBUG Processing 495/723 atomic regions from SNP 148426 to 149026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,078 DEBUG Processing 590/665 atomic regions from SNP 176973 to 177573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:49,081 DEBUG Processing 13/675 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,125 DEBUG Processing 124/705 atomic regions from SNP 36966 to 37566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,190 DEBUG Processing 496/723 atomic regions from SNP 148726 to 149326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,302 DEBUG Processing 14/675 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,304 DEBUG Processing 591/665 atomic regions from SNP 177273 to 177873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:49,348 DEBUG Processing 125/705 atomic regions from SNP 37266 to 37866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,415 DEBUG Processing 497/723 atomic regions from SNP 149026 to 149626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,527 DEBUG Processing 15/675 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,540 DEBUG Processing 592/665 atomic regions from SNP 177573 to 178173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:49,574 DEBUG Processing 126/705 atomic regions from SNP 37566 to 38166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,646 DEBUG Processing 498/723 atomic regions from SNP 149326 to 149926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,750 DEBUG Processing 16/675 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,773 DEBUG Processing 593/665 atomic regions from SNP 177873 to 178473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:49,800 DEBUG Processing 127/705 atomic regions from SNP 37866 to 38466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,874 DEBUG Processing 499/723 atomic regions from SNP 149626 to 150226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,973 DEBUG Processing 17/675 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,001 DEBUG Processing 594/665 atomic regions from SNP 178173 to 178773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:50,026 DEBUG Processing 128/705 atomic regions from SNP 38166 to 38766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,101 DEBUG Processing 500/723 atomic regions from SNP 149926 to 150526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,197 DEBUG Processing 18/675 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,254 DEBUG Processing 595/665 atomic regions from SNP 178473 to 179073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:50,255 DEBUG Processing 129/705 atomic regions from SNP 38466 to 39066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,331 DEBUG Processing 501/723 atomic regions from SNP 150226 to 150826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,429 DEBUG Processing 19/675 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,493 DEBUG Processing 130/705 atomic regions from SNP 38766 to 39366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,497 DEBUG Processing 596/665 atomic regions from SNP 178773 to 179373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:50,564 DEBUG Processing 502/723 atomic regions from SNP 150526 to 151126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,656 DEBUG Processing 20/675 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,740 DEBUG Processing 131/705 atomic regions from SNP 39066 to 39666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,745 DEBUG Processing 597/665 atomic regions from SNP 179073 to 179673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:50,805 DEBUG Processing 503/723 atomic regions from SNP 150826 to 151426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,884 DEBUG Processing 21/675 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,974 DEBUG Processing 132/705 atomic regions from SNP 39366 to 39966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,987 DEBUG Processing 598/665 atomic regions from SNP 179373 to 179973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:51,036 DEBUG Processing 504/723 atomic regions from SNP 151126 to 151726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,104 DEBUG Processing 22/675 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,200 DEBUG Processing 133/705 atomic regions from SNP 39666 to 40266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,220 DEBUG Processing 599/665 atomic regions from SNP 179673 to 180273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:51,264 DEBUG Processing 505/723 atomic regions from SNP 151426 to 152026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,317 DEBUG Processing 23/675 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,421 DEBUG Processing 134/705 atomic regions from SNP 39966 to 40566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,456 DEBUG Processing 600/665 atomic regions from SNP 179973 to 180573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:51,491 DEBUG Processing 506/723 atomic regions from SNP 151726 to 152326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,527 DEBUG Processing 24/675 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,643 DEBUG Processing 135/705 atomic regions from SNP 40266 to 40866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,697 DEBUG Processing 601/665 atomic regions from SNP 180273 to 180873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:51,725 DEBUG Processing 507/723 atomic regions from SNP 152026 to 152626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,751 DEBUG Processing 25/675 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,868 DEBUG Processing 136/705 atomic regions from SNP 40566 to 41166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,939 DEBUG Processing 602/665 atomic regions from SNP 180573 to 181173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:51,954 DEBUG Processing 508/723 atomic regions from SNP 152326 to 152926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,973 DEBUG Processing 26/675 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,096 DEBUG Processing 137/705 atomic regions from SNP 40866 to 41466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,184 DEBUG Processing 509/723 atomic regions from SNP 152626 to 153226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,185 DEBUG Processing 603/665 atomic regions from SNP 180873 to 181473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:52,198 DEBUG Processing 27/675 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,328 DEBUG Processing 138/705 atomic regions from SNP 41166 to 41766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,415 DEBUG Processing 510/723 atomic regions from SNP 152926 to 153526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,419 DEBUG Processing 604/665 atomic regions from SNP 181173 to 181773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:52,429 DEBUG Processing 28/675 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,559 DEBUG Processing 139/705 atomic regions from SNP 41466 to 42066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,654 DEBUG Processing 605/665 atomic regions from SNP 181473 to 182073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:52,655 DEBUG Processing 29/675 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,655 DEBUG Processing 511/723 atomic regions from SNP 153226 to 153826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,793 DEBUG Processing 140/705 atomic regions from SNP 41766 to 42366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,881 DEBUG Processing 30/675 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,889 DEBUG Processing 512/723 atomic regions from SNP 153526 to 154126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,891 DEBUG Processing 606/665 atomic regions from SNP 181773 to 182373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:53,026 DEBUG Processing 141/705 atomic regions from SNP 42066 to 42666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,105 DEBUG Processing 31/675 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,118 DEBUG Processing 513/723 atomic regions from SNP 153826 to 154426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,129 DEBUG Processing 607/665 atomic regions from SNP 182073 to 182673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:53,253 DEBUG Processing 142/705 atomic regions from SNP 42366 to 42966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,314 DEBUG Processing 32/675 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,334 DEBUG Processing 514/723 atomic regions from SNP 154126 to 154726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,358 DEBUG Processing 608/665 atomic regions from SNP 182373 to 182973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:53,471 DEBUG Processing 143/705 atomic regions from SNP 42666 to 43266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,525 DEBUG Processing 33/675 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,550 DEBUG Processing 515/723 atomic regions from SNP 154426 to 155026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,584 DEBUG Processing 609/665 atomic regions from SNP 182673 to 183273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:53,685 DEBUG Processing 144/705 atomic regions from SNP 42966 to 43566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,744 DEBUG Processing 34/675 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,771 DEBUG Processing 516/723 atomic regions from SNP 154726 to 155326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,811 DEBUG Processing 610/665 atomic regions from SNP 182973 to 183573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:53,906 DEBUG Processing 145/705 atomic regions from SNP 43266 to 43866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,973 DEBUG Processing 35/675 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,997 DEBUG Processing 517/723 atomic regions from SNP 155026 to 155626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,051 DEBUG Processing 611/665 atomic regions from SNP 183273 to 183873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:54,124 DEBUG Processing 146/705 atomic regions from SNP 43566 to 44166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,188 DEBUG Processing 36/675 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,231 DEBUG Processing 518/723 atomic regions from SNP 155326 to 155926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,281 DEBUG Processing 612/665 atomic regions from SNP 183573 to 184173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:54,336 DEBUG Processing 147/705 atomic regions from SNP 43866 to 44466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,403 DEBUG Processing 37/675 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,472 DEBUG Processing 519/723 atomic regions from SNP 155626 to 156226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,517 DEBUG Processing 613/665 atomic regions from SNP 183873 to 184473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:54,548 DEBUG Processing 148/705 atomic regions from SNP 44166 to 44766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,619 DEBUG Processing 38/675 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,690 DEBUG Processing 520/723 atomic regions from SNP 155926 to 156526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,749 DEBUG Processing 614/665 atomic regions from SNP 184173 to 184773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:54,755 DEBUG Processing 149/705 atomic regions from SNP 44466 to 45066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,837 DEBUG Processing 39/675 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,907 DEBUG Processing 521/723 atomic regions from SNP 156226 to 156826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,963 DEBUG Processing 150/705 atomic regions from SNP 44766 to 45366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,983 DEBUG Processing 615/665 atomic regions from SNP 184473 to 185073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:55,046 DEBUG Processing 40/675 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,130 DEBUG Processing 522/723 atomic regions from SNP 156526 to 157126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,181 DEBUG Processing 151/705 atomic regions from SNP 45066 to 45666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,222 DEBUG Processing 616/665 atomic regions from SNP 184773 to 185373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:55,258 DEBUG Processing 41/675 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,351 DEBUG Processing 523/723 atomic regions from SNP 156826 to 157426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,399 DEBUG Processing 152/705 atomic regions from SNP 45366 to 45966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,452 DEBUG Processing 617/665 atomic regions from SNP 185073 to 185673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:55,469 DEBUG Processing 42/675 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,579 DEBUG Processing 524/723 atomic regions from SNP 157126 to 157726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,623 DEBUG Processing 153/705 atomic regions from SNP 45666 to 46266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,691 DEBUG Processing 43/675 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,700 DEBUG Processing 618/665 atomic regions from SNP 185373 to 185973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:55,808 DEBUG Processing 525/723 atomic regions from SNP 157426 to 158026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,850 DEBUG Processing 154/705 atomic regions from SNP 45966 to 46566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,916 DEBUG Processing 44/675 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,935 DEBUG Processing 619/665 atomic regions from SNP 185673 to 186273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:56,031 DEBUG Processing 526/723 atomic regions from SNP 157726 to 158326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,071 DEBUG Processing 155/705 atomic regions from SNP 46266 to 46866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,131 DEBUG Processing 45/675 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,161 DEBUG Processing 620/665 atomic regions from SNP 185973 to 186573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:56,259 DEBUG Processing 527/723 atomic regions from SNP 158026 to 158626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,292 DEBUG Processing 156/705 atomic regions from SNP 46566 to 47166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,352 DEBUG Processing 46/675 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,386 DEBUG Processing 621/665 atomic regions from SNP 186273 to 186873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:56,491 DEBUG Processing 528/723 atomic regions from SNP 158326 to 158926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,516 DEBUG Processing 157/705 atomic regions from SNP 46866 to 47466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,574 DEBUG Processing 47/675 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,607 DEBUG Processing 622/665 atomic regions from SNP 186573 to 187173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:56,716 DEBUG Processing 529/723 atomic regions from SNP 158626 to 159226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,736 DEBUG Processing 158/705 atomic regions from SNP 47166 to 47766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,795 DEBUG Processing 48/675 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,836 DEBUG Processing 623/665 atomic regions from SNP 186873 to 187473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:56,938 DEBUG Processing 530/723 atomic regions from SNP 158926 to 159526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,955 DEBUG Processing 159/705 atomic regions from SNP 47466 to 48066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,017 DEBUG Processing 49/675 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,062 DEBUG Processing 624/665 atomic regions from SNP 187173 to 187773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:57,160 DEBUG Processing 531/723 atomic regions from SNP 159226 to 159826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,170 DEBUG Processing 160/705 atomic regions from SNP 47766 to 48366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,237 DEBUG Processing 50/675 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,293 DEBUG Processing 625/665 atomic regions from SNP 187473 to 188073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:57,393 DEBUG Processing 532/723 atomic regions from SNP 159526 to 160126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,394 DEBUG Processing 161/705 atomic regions from SNP 48066 to 48666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,489 DEBUG Processing 51/675 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,530 DEBUG Processing 626/665 atomic regions from SNP 187773 to 188373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:57,609 DEBUG Processing 162/705 atomic regions from SNP 48366 to 48966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,632 DEBUG Processing 533/723 atomic regions from SNP 159826 to 160426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,730 DEBUG Processing 52/675 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,763 DEBUG Processing 627/665 atomic regions from SNP 188073 to 188673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:57,830 DEBUG Processing 163/705 atomic regions from SNP 48666 to 49266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,860 DEBUG Processing 534/723 atomic regions from SNP 160126 to 160726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,975 DEBUG Processing 53/675 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,993 DEBUG Processing 628/665 atomic regions from SNP 188373 to 188973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:58,072 DEBUG Processing 164/705 atomic regions from SNP 48966 to 49566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,093 DEBUG Processing 535/723 atomic regions from SNP 160426 to 161026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,212 DEBUG Processing 54/675 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,213 DEBUG Processing 629/665 atomic regions from SNP 188673 to 189273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:58,297 DEBUG Processing 165/705 atomic regions from SNP 49266 to 49866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,322 DEBUG Processing 536/723 atomic regions from SNP 160726 to 161326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,435 DEBUG Processing 630/665 atomic regions from SNP 188973 to 189573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:58,442 DEBUG Processing 55/675 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,540 DEBUG Processing 166/705 atomic regions from SNP 49566 to 50166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,553 DEBUG Processing 537/723 atomic regions from SNP 161026 to 161626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,657 DEBUG Processing 631/665 atomic regions from SNP 189273 to 189873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:58,666 DEBUG Processing 56/675 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,789 DEBUG Processing 538/723 atomic regions from SNP 161326 to 161926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,797 DEBUG Processing 167/705 atomic regions from SNP 49866 to 50466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,890 DEBUG Processing 57/675 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,897 DEBUG Processing 632/665 atomic regions from SNP 189573 to 190173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:59,024 DEBUG Processing 539/723 atomic regions from SNP 161626 to 162226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,031 DEBUG Processing 168/705 atomic regions from SNP 50166 to 50766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,122 DEBUG Processing 58/675 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,143 DEBUG Processing 633/665 atomic regions from SNP 189873 to 190473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:59,256 DEBUG Processing 540/723 atomic regions from SNP 161926 to 162526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,269 DEBUG Processing 169/705 atomic regions from SNP 50466 to 51066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,369 DEBUG Processing 634/665 atomic regions from SNP 190173 to 190773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:59,369 DEBUG Processing 59/675 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,492 DEBUG Processing 170/705 atomic regions from SNP 50766 to 51366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,496 DEBUG Processing 541/723 atomic regions from SNP 162226 to 162826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,597 DEBUG Processing 635/665 atomic regions from SNP 190473 to 191073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:59,612 DEBUG Processing 60/675 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,723 DEBUG Processing 171/705 atomic regions from SNP 51066 to 51666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,732 DEBUG Processing 542/723 atomic regions from SNP 162526 to 163126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,836 DEBUG Processing 636/665 atomic regions from SNP 190773 to 191373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:55:59,875 DEBUG Processing 61/675 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,955 DEBUG Processing 172/705 atomic regions from SNP 51366 to 51966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,988 DEBUG Processing 543/723 atomic regions from SNP 162826 to 163426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,070 DEBUG Processing 637/665 atomic regions from SNP 191073 to 191673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:00,125 DEBUG Processing 62/675 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,181 DEBUG Processing 173/705 atomic regions from SNP 51666 to 52266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,218 DEBUG Processing 544/723 atomic regions from SNP 163126 to 163726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,305 DEBUG Processing 638/665 atomic regions from SNP 191373 to 191973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:00,356 DEBUG Processing 63/675 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,414 DEBUG Processing 174/705 atomic regions from SNP 51966 to 52566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,455 DEBUG Processing 545/723 atomic regions from SNP 163426 to 164026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,556 DEBUG Processing 639/665 atomic regions from SNP 191673 to 192273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:00,594 DEBUG Processing 64/675 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,644 DEBUG Processing 175/705 atomic regions from SNP 52266 to 52866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,689 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:56:00,690 DEBUG chr12: Signal quantile: 0.992. signal threshold: 12. Best RMSEA: 0.010 2025-01-31 09:56:00,691 DEBUG Processing 546/723 atomic regions from SNP 163726 to 164326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,788 DEBUG Processing 640/665 atomic regions from SNP 191973 to 192573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:00,820 DEBUG Processing 65/675 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,876 DEBUG Processing 176/705 atomic regions from SNP 52566 to 53166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,928 DEBUG Processing 547/723 atomic regions from SNP 164026 to 164626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,022 DEBUG Processing 641/665 atomic regions from SNP 192273 to 192873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:01,048 DEBUG Processing 66/675 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,109 DEBUG Processing 177/705 atomic regions from SNP 52866 to 53466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,164 DEBUG Processing 548/723 atomic regions from SNP 164326 to 164926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,265 DEBUG Processing 642/665 atomic regions from SNP 192573 to 193173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:01,281 DEBUG Processing 67/675 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,341 DEBUG Processing 178/705 atomic regions from SNP 53166 to 53766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,426 DEBUG Processing 549/723 atomic regions from SNP 164626 to 165226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,495 DEBUG Processing 643/665 atomic regions from SNP 192873 to 193473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:01,507 DEBUG Processing 68/675 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,566 DEBUG Processing 179/705 atomic regions from SNP 53466 to 54066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,658 DEBUG Processing 550/723 atomic regions from SNP 164926 to 165526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,718 DEBUG Processing 644/665 atomic regions from SNP 193173 to 193773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:01,734 DEBUG Processing 69/675 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,795 DEBUG Processing 180/705 atomic regions from SNP 53766 to 54366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,886 DEBUG Processing 551/723 atomic regions from SNP 165226 to 165826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,944 DEBUG Processing 645/665 atomic regions from SNP 193473 to 194073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:01,960 DEBUG Processing 70/675 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,024 DEBUG Processing 181/705 atomic regions from SNP 54066 to 54666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,124 DEBUG Processing 552/723 atomic regions from SNP 165526 to 166126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,173 DEBUG Processing 646/665 atomic regions from SNP 193773 to 194373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:02,189 DEBUG Processing 71/675 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,253 DEBUG Processing 182/705 atomic regions from SNP 54366 to 54966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,383 DEBUG Processing 553/723 atomic regions from SNP 165826 to 166426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,420 DEBUG Processing 72/675 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,425 DEBUG Processing 647/665 atomic regions from SNP 194073 to 194673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:02,483 DEBUG Processing 183/705 atomic regions from SNP 54666 to 55266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,627 DEBUG Processing 554/723 atomic regions from SNP 166126 to 166726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,650 DEBUG Processing 73/675 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,672 DEBUG Processing 648/665 atomic regions from SNP 194373 to 194973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:02,705 DEBUG Processing 184/705 atomic regions from SNP 54966 to 55566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,875 DEBUG Processing 555/723 atomic regions from SNP 166426 to 167026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,884 DEBUG Processing 74/675 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,908 DEBUG Processing 649/665 atomic regions from SNP 194673 to 195273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:02,933 DEBUG Processing 185/705 atomic regions from SNP 55266 to 55866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,002 DEBUG chr12 total SNP count: 199077 2025-01-31 09:56:03,002 DEBUG chr12 length: 120129022 2025-01-31 09:56:03,002 DEBUG ----------------------------------------- 2025-01-31 09:56:03,002 INFO Processing SNPs in chr12 2025-01-31 09:56:03,118 DEBUG Processing 75/675 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,133 DEBUG Processing 556/723 atomic regions from SNP 166726 to 167326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,178 DEBUG Processing 650/665 atomic regions from SNP 194973 to 195573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:03,178 DEBUG Processing 186/705 atomic regions from SNP 55566 to 56166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,204 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 199077)] 2025-01-31 09:56:03,345 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:03,347 DEBUG Processing 76/675 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,391 DEBUG Processing 557/723 atomic regions from SNP 167026 to 167626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,399 DEBUG Processing 187/705 atomic regions from SNP 55866 to 56466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,423 DEBUG Processing 651/665 atomic regions from SNP 195273 to 195873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:03,574 DEBUG Processing 77/675 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,625 DEBUG Processing 558/723 atomic regions from SNP 167326 to 167926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,626 DEBUG Processing 188/705 atomic regions from SNP 56166 to 56766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,676 DEBUG Processing 652/665 atomic regions from SNP 195573 to 196173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:03,795 DEBUG Processing 78/675 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,851 DEBUG Processing 189/705 atomic regions from SNP 56466 to 57066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,857 DEBUG Processing 559/723 atomic regions from SNP 167626 to 168226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,921 DEBUG Processing 653/665 atomic regions from SNP 195873 to 196473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:04,024 DEBUG Processing 79/675 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,090 DEBUG Processing 190/705 atomic regions from SNP 56766 to 57366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,098 DEBUG Processing 560/723 atomic regions from SNP 167926 to 168526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,151 DEBUG Processing 654/665 atomic regions from SNP 196173 to 196773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:04,257 DEBUG Processing 80/675 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,332 DEBUG Processing 191/705 atomic regions from SNP 57066 to 57666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,341 DEBUG Processing 561/723 atomic regions from SNP 168226 to 168826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,377 DEBUG Processing 655/665 atomic regions from SNP 196473 to 197073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:04,476 DEBUG Processing 81/675 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,570 DEBUG Processing 192/705 atomic regions from SNP 57366 to 57966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,581 DEBUG Processing 562/723 atomic regions from SNP 168526 to 169126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,602 DEBUG Processing 656/665 atomic regions from SNP 196773 to 197373 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:04,689 DEBUG Processing 82/675 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,813 DEBUG Processing 193/705 atomic regions from SNP 57666 to 58266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,819 DEBUG Processing 563/723 atomic regions from SNP 168826 to 169426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,841 DEBUG Processing 657/665 atomic regions from SNP 197073 to 197673 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:04,916 DEBUG Processing 83/675 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,056 DEBUG Processing 564/723 atomic regions from SNP 169126 to 169726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,058 DEBUG Processing 194/705 atomic regions from SNP 57966 to 58566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,075 DEBUG Processing 658/665 atomic regions from SNP 197373 to 197973 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:05,139 DEBUG Processing 84/675 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,294 DEBUG Processing 565/723 atomic regions from SNP 169426 to 170026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,295 DEBUG Processing 195/705 atomic regions from SNP 58266 to 58866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,316 DEBUG Processing 659/665 atomic regions from SNP 197673 to 198273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:05,356 DEBUG Processing 85/675 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,529 DEBUG Processing 196/705 atomic regions from SNP 58566 to 59166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,531 DEBUG Processing 566/723 atomic regions from SNP 169726 to 170326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,555 DEBUG Processing 660/665 atomic regions from SNP 197973 to 198573 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:05,578 DEBUG Processing 86/675 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,757 DEBUG Processing 197/705 atomic regions from SNP 58866 to 59466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,768 DEBUG Processing 567/723 atomic regions from SNP 170026 to 170626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,784 DEBUG Processing 661/665 atomic regions from SNP 198273 to 198873 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:05,805 DEBUG Processing 87/675 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,988 DEBUG Processing 198/705 atomic regions from SNP 59166 to 59766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,001 DEBUG Processing 568/723 atomic regions from SNP 170326 to 170926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,016 DEBUG Processing 662/665 atomic regions from SNP 198573 to 199173 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:06,031 DEBUG Processing 88/675 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,223 DEBUG Processing 199/705 atomic regions from SNP 59466 to 60066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,236 DEBUG Processing 569/723 atomic regions from SNP 170626 to 171226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,245 DEBUG Processing 663/665 atomic regions from SNP 198873 to 199473 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:06,255 DEBUG Processing 89/675 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,458 DEBUG Processing 200/705 atomic regions from SNP 59766 to 60366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,471 DEBUG Processing 664/665 atomic regions from SNP 199173 to 199773 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:06,473 DEBUG Processing 570/723 atomic regions from SNP 170926 to 171526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,480 DEBUG Processing 90/675 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,696 DEBUG Processing 665/665 atomic regions from SNP 199473 to 200073 for chr14 (subchromosome 3 of 3). 2025-01-31 09:56:06,697 DEBUG Processing 201/705 atomic regions from SNP 60066 to 60666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,704 DEBUG Processing 91/675 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,716 DEBUG Processing 571/723 atomic regions from SNP 171226 to 171826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,834 DEBUG Unique SNPs positions in subchromosome 3: 200074 2025-01-31 09:56:06,928 DEBUG Processing 92/675 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,930 DEBUG Processing 202/705 atomic regions from SNP 60366 to 60966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,964 DEBUG Processing 572/723 atomic regions from SNP 171526 to 172126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,147 DEBUG Processing 93/675 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,162 DEBUG Processing 203/705 atomic regions from SNP 60666 to 61266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,196 DEBUG Processing 573/723 atomic regions from SNP 171826 to 172426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,367 DEBUG Processing 94/675 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,390 DEBUG Processing 204/705 atomic regions from SNP 60966 to 61566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,443 DEBUG Processing 574/723 atomic regions from SNP 172126 to 172726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,586 DEBUG Processing 95/675 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,616 DEBUG Processing 205/705 atomic regions from SNP 61266 to 61866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,681 DEBUG Processing 575/723 atomic regions from SNP 172426 to 173026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,811 DEBUG Processing 96/675 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,846 DEBUG Processing 206/705 atomic regions from SNP 61566 to 62166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,910 DEBUG Processing 576/723 atomic regions from SNP 172726 to 173326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,035 DEBUG Processing 97/675 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,077 DEBUG Processing 207/705 atomic regions from SNP 61866 to 62466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,140 DEBUG Processing 577/723 atomic regions from SNP 173026 to 173626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,267 DEBUG Processing 98/675 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,313 DEBUG Processing 208/705 atomic regions from SNP 62166 to 62766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,377 DEBUG Processing 578/723 atomic regions from SNP 173326 to 173926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,491 DEBUG Processing 99/675 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,548 DEBUG Processing 209/705 atomic regions from SNP 62466 to 63066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,619 DEBUG Processing 579/723 atomic regions from SNP 173626 to 174226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,715 DEBUG Processing 100/675 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,777 DEBUG Processing 210/705 atomic regions from SNP 62766 to 63366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,876 DEBUG Processing 580/723 atomic regions from SNP 173926 to 174526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,942 DEBUG Processing 101/675 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,009 DEBUG Processing 211/705 atomic regions from SNP 63066 to 63666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,110 DEBUG Processing 581/723 atomic regions from SNP 174226 to 174826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,165 DEBUG Processing 102/675 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,236 DEBUG Processing 212/705 atomic regions from SNP 63366 to 63966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,338 DEBUG Processing 582/723 atomic regions from SNP 174526 to 175126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,418 DEBUG Processing 103/675 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,467 DEBUG Processing 213/705 atomic regions from SNP 63666 to 64266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,582 DEBUG Processing 583/723 atomic regions from SNP 174826 to 175426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,677 DEBUG Processing 104/675 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,701 DEBUG Processing 214/705 atomic regions from SNP 63966 to 64566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,811 DEBUG Processing 584/723 atomic regions from SNP 175126 to 175726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,934 DEBUG Processing 105/675 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,934 DEBUG Processing 215/705 atomic regions from SNP 64266 to 64866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,045 DEBUG Processing 585/723 atomic regions from SNP 175426 to 176026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,162 DEBUG Processing 216/705 atomic regions from SNP 64566 to 65166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,185 DEBUG Processing 106/675 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,272 DEBUG Processing 586/723 atomic regions from SNP 175726 to 176326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,386 DEBUG Processing 217/705 atomic regions from SNP 64866 to 65466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,445 DEBUG Processing 107/675 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,502 DEBUG Processing 587/723 atomic regions from SNP 176026 to 176626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,621 DEBUG Processing 218/705 atomic regions from SNP 65166 to 65766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,708 DEBUG Processing 108/675 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,735 DEBUG Processing 588/723 atomic regions from SNP 176326 to 176926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,858 DEBUG Processing 219/705 atomic regions from SNP 65466 to 66066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,945 DEBUG Processing 109/675 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,974 DEBUG Processing 589/723 atomic regions from SNP 176626 to 177226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,099 DEBUG Processing 220/705 atomic regions from SNP 65766 to 66366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,174 DEBUG Processing 110/675 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,209 DEBUG Processing 590/723 atomic regions from SNP 176926 to 177526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,341 DEBUG Processing 221/705 atomic regions from SNP 66066 to 66666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,411 DEBUG Processing 111/675 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,441 DEBUG Processing 591/723 atomic regions from SNP 177226 to 177826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,578 DEBUG Processing 222/705 atomic regions from SNP 66366 to 66966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,641 DEBUG Processing 112/675 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,673 DEBUG Processing 592/723 atomic regions from SNP 177526 to 178126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,812 DEBUG Processing 223/705 atomic regions from SNP 66666 to 67266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,874 DEBUG Processing 113/675 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,923 DEBUG Processing 593/723 atomic regions from SNP 177826 to 178426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,048 DEBUG Processing 224/705 atomic regions from SNP 66966 to 67566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,127 DEBUG Processing 114/675 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,173 DEBUG Processing 594/723 atomic regions from SNP 178126 to 178726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,279 DEBUG Processing 225/705 atomic regions from SNP 67266 to 67866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,382 DEBUG Processing 115/675 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,421 DEBUG Processing 595/723 atomic regions from SNP 178426 to 179026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,511 DEBUG Processing 226/705 atomic regions from SNP 67566 to 68166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,643 DEBUG Processing 116/675 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,673 DEBUG Processing 596/723 atomic regions from SNP 178726 to 179326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,739 DEBUG Processing 227/705 atomic regions from SNP 67866 to 68466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,897 DEBUG Processing 117/675 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,931 DEBUG Processing 597/723 atomic regions from SNP 179026 to 179626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,971 DEBUG Processing 228/705 atomic regions from SNP 68166 to 68766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,127 DEBUG Processing 118/675 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,176 DEBUG Processing 598/723 atomic regions from SNP 179326 to 179926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,204 DEBUG Processing 229/705 atomic regions from SNP 68466 to 69066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,370 DEBUG Processing 119/675 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,408 DEBUG Processing 599/723 atomic regions from SNP 179626 to 180226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,437 DEBUG Processing 230/705 atomic regions from SNP 68766 to 69366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,623 DEBUG Processing 120/675 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,641 DEBUG Processing 600/723 atomic regions from SNP 179926 to 180526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,668 DEBUG Processing 231/705 atomic regions from SNP 69066 to 69666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,871 DEBUG Processing 601/723 atomic regions from SNP 180226 to 180826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,876 DEBUG Processing 121/675 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,899 DEBUG Processing 232/705 atomic regions from SNP 69366 to 69966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,100 DEBUG Processing 602/723 atomic regions from SNP 180526 to 181126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,122 DEBUG Processing 233/705 atomic regions from SNP 69666 to 70266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,133 DEBUG Processing 122/675 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,347 DEBUG Processing 234/705 atomic regions from SNP 69966 to 70566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,347 DEBUG Processing 603/723 atomic regions from SNP 180826 to 181426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,392 DEBUG Processing 123/675 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,575 DEBUG Processing 235/705 atomic regions from SNP 70266 to 70866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,578 DEBUG Processing 604/723 atomic regions from SNP 181126 to 181726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,649 DEBUG Processing 124/675 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,804 DEBUG Processing 236/705 atomic regions from SNP 70566 to 71166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,811 DEBUG Processing 605/723 atomic regions from SNP 181426 to 182026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,889 DEBUG Processing 125/675 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,028 DEBUG Processing 237/705 atomic regions from SNP 70866 to 71466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,041 DEBUG Processing 606/723 atomic regions from SNP 181726 to 182326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,114 DEBUG Processing 126/675 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,264 DEBUG Processing 238/705 atomic regions from SNP 71166 to 71766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,270 DEBUG Processing 607/723 atomic regions from SNP 182026 to 182626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,342 DEBUG Processing 127/675 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,503 DEBUG Processing 239/705 atomic regions from SNP 71466 to 72066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,511 DEBUG Processing 608/723 atomic regions from SNP 182326 to 182926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,581 DEBUG Processing 128/675 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,736 DEBUG Processing 240/705 atomic regions from SNP 71766 to 72366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,748 DEBUG Processing 609/723 atomic regions from SNP 182626 to 183226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,814 DEBUG Processing 129/675 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,974 DEBUG Processing 241/705 atomic regions from SNP 72066 to 72666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,997 DEBUG Processing 610/723 atomic regions from SNP 182926 to 183526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,053 DEBUG Processing 130/675 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,219 DEBUG Processing 242/705 atomic regions from SNP 72366 to 72966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,238 DEBUG Processing 611/723 atomic regions from SNP 183226 to 183826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,306 DEBUG Processing 131/675 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,443 DEBUG Processing 243/705 atomic regions from SNP 72666 to 73266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,463 DEBUG Processing 612/723 atomic regions from SNP 183526 to 184126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,537 DEBUG Processing 132/675 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,659 DEBUG Processing 244/705 atomic regions from SNP 72966 to 73566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,685 DEBUG Processing 613/723 atomic regions from SNP 183826 to 184426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,763 DEBUG Processing 133/675 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,875 DEBUG Processing 245/705 atomic regions from SNP 73266 to 73866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,910 DEBUG Processing 614/723 atomic regions from SNP 184126 to 184726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,997 DEBUG Processing 134/675 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,090 DEBUG Processing 246/705 atomic regions from SNP 73566 to 74166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,164 DEBUG Processing 615/723 atomic regions from SNP 184426 to 185026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,226 DEBUG Processing 135/675 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,311 DEBUG Processing 247/705 atomic regions from SNP 73866 to 74466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,430 DEBUG Processing 616/723 atomic regions from SNP 184726 to 185326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,456 DEBUG Processing 136/675 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,532 DEBUG Processing 248/705 atomic regions from SNP 74166 to 74766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,684 DEBUG Processing 617/723 atomic regions from SNP 185026 to 185626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,688 DEBUG Processing 137/675 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,745 DEBUG Processing 249/705 atomic regions from SNP 74466 to 75066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,787 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:56:17,914 DEBUG Subchromosome time: 191.6156722990563, subchromosome SNPs: 200074 2025-01-31 09:56:17,914 DEBUG Estimated BADs: [0.00, 0.31, 1.22, 4.89, 1.22, 3.66, 2.44, 1.22, 0.41, 1.22, 2.44, 0.41, 3.66, 1.22, 6.11, 2.44, 1.22, 2.44, 1.22, 3.66, 1.22, 3.66, 0.31, 1.22, 0.31, 0.61, 8.55, 0.61, 0.31, 1.22, 2.44, 0.41] SNP counts: [22, 138, 21134, 4084, 13768, 4255, 6206, 3623, 6013, 2942, 8488, 1414, 2812, 2137, 2387, 21615, 2385, 3907, 8197, 2320, 4461, 917, 10188, 2728, 17688, 8761, 106, 5847, 12866, 12695, 4703, 1427] SNP IDs counts: [22, 138, 21134, 4084, 13768, 4255, 6206, 3623, 6013, 2942, 8488, 1414, 2812, 2137, 2387, 21615, 2385, 3907, 8197, 2320, 4461, 917, 10188, 2728, 17688, 8761, 106, 5847, 12866, 12695, 4703, 1427] Critical gap: 618213bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 3.29Mbp[0.64Mbp], 5.13Mbp[0.71Mbp], 19.70Mbp, 21.85Mbp, 29.71Mbp, 31.95Mbp, 35.29Mbp, 37.36Mbp, 40.89Mbp, 45.28Mbp, 49.86Mbp, 50.78Mbp, 52.45Mbp, 54.36Mbp, 55.63Mbp, 67.33Mbp, 68.62Mbp, 71.16Mbp, 75.75Mbp, 76.96Mbp, 79.39Mbp, 79.89Mbp, 86.11Mbp, 87.62Mbp, 98.14Mbp, 103.05Mbp, 103.10Mbp, 106.43Mbp, 114.14Mbp, 121.25Mbp, 123.91Mbp, 124.90Mbp] 2025-01-31 09:56:17,914 DEBUG chr14 time: 191.61635088804178 s 2025-01-31 09:56:17,915 DEBUG Processing 618/723 atomic regions from SNP 185326 to 185926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,918 DEBUG Processing 138/675 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,962 DEBUG Processing 250/705 atomic regions from SNP 74766 to 75366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,085 DEBUG chr14: Fitting background model for 31 segments 2025-01-31 09:56:18,158 DEBUG Processing 139/675 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,182 DEBUG Processing 251/705 atomic regions from SNP 75066 to 75666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,187 DEBUG Processing 619/723 atomic regions from SNP 185626 to 186226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,381 DEBUG Processing 140/675 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,401 DEBUG Processing 252/705 atomic regions from SNP 75366 to 75966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,414 DEBUG Processing 620/723 atomic regions from SNP 185926 to 186526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,609 DEBUG Processing 141/675 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,630 DEBUG Processing 253/705 atomic regions from SNP 75666 to 76266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,656 DEBUG Processing 621/723 atomic regions from SNP 186226 to 186826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,839 DEBUG Processing 142/675 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,858 DEBUG Processing 254/705 atomic regions from SNP 75966 to 76566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,916 DEBUG Processing 622/723 atomic regions from SNP 186526 to 187126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,062 DEBUG Processing 143/675 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,090 DEBUG Processing 255/705 atomic regions from SNP 76266 to 76866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,174 DEBUG Processing 623/723 atomic regions from SNP 186826 to 187426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,286 DEBUG Processing 144/675 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,321 DEBUG Processing 256/705 atomic regions from SNP 76566 to 77166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,434 DEBUG Processing 624/723 atomic regions from SNP 187126 to 187726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,519 DEBUG Processing 145/675 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,553 DEBUG Processing 257/705 atomic regions from SNP 76866 to 77466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,679 DEBUG Processing 625/723 atomic regions from SNP 187426 to 188026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,752 DEBUG Processing 146/675 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,786 DEBUG Processing 258/705 atomic regions from SNP 77166 to 77766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,938 DEBUG Processing 626/723 atomic regions from SNP 187726 to 188326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,974 DEBUG Processing 147/675 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,020 DEBUG Processing 259/705 atomic regions from SNP 77466 to 78066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,193 DEBUG Processing 148/675 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,194 DEBUG Processing 627/723 atomic regions from SNP 188026 to 188626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,254 DEBUG Processing 260/705 atomic regions from SNP 77766 to 78366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,412 DEBUG Processing 149/675 atomic regions from SNP 44548 to 45148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,454 DEBUG Processing 628/723 atomic regions from SNP 188326 to 188926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,487 DEBUG Processing 261/705 atomic regions from SNP 78066 to 78666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,629 DEBUG Processing 150/675 atomic regions from SNP 44848 to 45448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,721 DEBUG Processing 629/723 atomic regions from SNP 188626 to 189226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,732 DEBUG Processing 262/705 atomic regions from SNP 78366 to 78966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,855 DEBUG Processing 151/675 atomic regions from SNP 45148 to 45748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,990 DEBUG Processing 630/723 atomic regions from SNP 188926 to 189526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,998 DEBUG Processing 263/705 atomic regions from SNP 78666 to 79266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,083 DEBUG Processing 152/675 atomic regions from SNP 45448 to 46048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,242 DEBUG Processing 264/705 atomic regions from SNP 78966 to 79566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,266 DEBUG Processing 631/723 atomic regions from SNP 189226 to 189826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,332 DEBUG Processing 153/675 atomic regions from SNP 45748 to 46348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,473 DEBUG Processing 265/705 atomic regions from SNP 79266 to 79866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,541 DEBUG Processing 632/723 atomic regions from SNP 189526 to 190126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,578 DEBUG Processing 154/675 atomic regions from SNP 46048 to 46648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,700 DEBUG Processing 266/705 atomic regions from SNP 79566 to 80166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,796 DEBUG Processing 633/723 atomic regions from SNP 189826 to 190426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,827 DEBUG Processing 155/675 atomic regions from SNP 46348 to 46948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,927 DEBUG Processing 267/705 atomic regions from SNP 79866 to 80466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,027 DEBUG Processing 634/723 atomic regions from SNP 190126 to 190726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,074 DEBUG Processing 156/675 atomic regions from SNP 46648 to 47248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,165 DEBUG Processing 268/705 atomic regions from SNP 80166 to 80766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,255 DEBUG Processing 635/723 atomic regions from SNP 190426 to 191026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,305 DEBUG Processing 157/675 atomic regions from SNP 46948 to 47548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,391 DEBUG Processing 269/705 atomic regions from SNP 80466 to 81066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,486 DEBUG Processing 636/723 atomic regions from SNP 190726 to 191326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,538 DEBUG Processing 158/675 atomic regions from SNP 47248 to 47848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,638 DEBUG Processing 270/705 atomic regions from SNP 80766 to 81366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,737 DEBUG Processing 637/723 atomic regions from SNP 191026 to 191626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,781 DEBUG Processing 159/675 atomic regions from SNP 47548 to 48148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,896 DEBUG Processing 271/705 atomic regions from SNP 81066 to 81666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,990 DEBUG Processing 638/723 atomic regions from SNP 191326 to 191926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,046 DEBUG Processing 160/675 atomic regions from SNP 47848 to 48448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,134 DEBUG Processing 272/705 atomic regions from SNP 81366 to 81966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,239 DEBUG Processing 639/723 atomic regions from SNP 191626 to 192226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,285 DEBUG Processing 161/675 atomic regions from SNP 48148 to 48748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,360 DEBUG Processing 273/705 atomic regions from SNP 81666 to 82266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,509 DEBUG Processing 640/723 atomic regions from SNP 191926 to 192526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,515 DEBUG Processing 162/675 atomic regions from SNP 48448 to 49048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,584 DEBUG Processing 274/705 atomic regions from SNP 81966 to 82566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,748 DEBUG Processing 163/675 atomic regions from SNP 48748 to 49348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,767 DEBUG Processing 641/723 atomic regions from SNP 192226 to 192826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,813 DEBUG Processing 275/705 atomic regions from SNP 82266 to 82866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,998 DEBUG Processing 164/675 atomic regions from SNP 49048 to 49648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,037 DEBUG Processing 276/705 atomic regions from SNP 82566 to 83166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,040 DEBUG Processing 642/723 atomic regions from SNP 192526 to 193126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,241 DEBUG Processing 165/675 atomic regions from SNP 49348 to 49948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,265 DEBUG Processing 277/705 atomic regions from SNP 82866 to 83466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,298 DEBUG Processing 643/723 atomic regions from SNP 192826 to 193426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,470 DEBUG Processing 166/675 atomic regions from SNP 49648 to 50248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,503 DEBUG Processing 278/705 atomic regions from SNP 83166 to 83766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,551 DEBUG Processing 644/723 atomic regions from SNP 193126 to 193726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,697 DEBUG Processing 167/675 atomic regions from SNP 49948 to 50548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,759 DEBUG Processing 279/705 atomic regions from SNP 83466 to 84066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,795 DEBUG Processing 645/723 atomic regions from SNP 193426 to 194026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,928 DEBUG Processing 168/675 atomic regions from SNP 50248 to 50848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,011 DEBUG Processing 280/705 atomic regions from SNP 83766 to 84366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,033 DEBUG Processing 646/723 atomic regions from SNP 193726 to 194326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,158 DEBUG Processing 169/675 atomic regions from SNP 50548 to 51148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,273 DEBUG Processing 281/705 atomic regions from SNP 84066 to 84666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,283 DEBUG Processing 647/723 atomic regions from SNP 194026 to 194626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,381 DEBUG Processing 170/675 atomic regions from SNP 50848 to 51448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,512 DEBUG Processing 282/705 atomic regions from SNP 84366 to 84966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,516 DEBUG Processing 648/723 atomic regions from SNP 194326 to 194926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,616 DEBUG Processing 171/675 atomic regions from SNP 51148 to 51748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,755 DEBUG Processing 649/723 atomic regions from SNP 194626 to 195226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,766 DEBUG Processing 283/705 atomic regions from SNP 84666 to 85266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,858 DEBUG Processing 172/675 atomic regions from SNP 51448 to 52048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,993 DEBUG Processing 650/723 atomic regions from SNP 194926 to 195526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,015 DEBUG Processing 284/705 atomic regions from SNP 84966 to 85566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,081 DEBUG Processing 173/675 atomic regions from SNP 51748 to 52348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,233 DEBUG Processing 651/723 atomic regions from SNP 195226 to 195826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,252 DEBUG Processing 285/705 atomic regions from SNP 85266 to 85866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,312 DEBUG Processing 174/675 atomic regions from SNP 52048 to 52648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,474 DEBUG Processing 652/723 atomic regions from SNP 195526 to 196126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,486 DEBUG Processing 286/705 atomic regions from SNP 85566 to 86166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,545 DEBUG Processing 175/675 atomic regions from SNP 52348 to 52948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,718 DEBUG Processing 653/723 atomic regions from SNP 195826 to 196426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,725 DEBUG Processing 287/705 atomic regions from SNP 85866 to 86466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,798 DEBUG Processing 176/675 atomic regions from SNP 52648 to 53248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,959 DEBUG Processing 654/723 atomic regions from SNP 196126 to 196726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,959 DEBUG Processing 288/705 atomic regions from SNP 86166 to 86766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,069 DEBUG Processing 177/675 atomic regions from SNP 52948 to 53548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,194 DEBUG Processing 655/723 atomic regions from SNP 196426 to 197026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,199 DEBUG Processing 289/705 atomic regions from SNP 86466 to 87066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,328 DEBUG Processing 178/675 atomic regions from SNP 53248 to 53848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,426 DEBUG Processing 656/723 atomic regions from SNP 196726 to 197326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,452 DEBUG Processing 290/705 atomic regions from SNP 86766 to 87366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,573 DEBUG Processing 179/675 atomic regions from SNP 53548 to 54148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,664 DEBUG Processing 657/723 atomic regions from SNP 197026 to 197626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,706 DEBUG Processing 291/705 atomic regions from SNP 87066 to 87666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,797 DEBUG Processing 180/675 atomic regions from SNP 53848 to 54448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,899 DEBUG Processing 658/723 atomic regions from SNP 197326 to 197926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,943 DEBUG Processing 292/705 atomic regions from SNP 87366 to 87966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,036 DEBUG Processing 181/675 atomic regions from SNP 54148 to 54748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,135 DEBUG Processing 659/723 atomic regions from SNP 197626 to 198226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,171 DEBUG Processing 293/705 atomic regions from SNP 87666 to 88266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,287 DEBUG Processing 182/675 atomic regions from SNP 54448 to 55048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,353 DEBUG Segmenting atomic regions: 2025-01-31 09:56:28,383 DEBUG Processing 660/723 atomic regions from SNP 197926 to 198526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,398 DEBUG Processing 294/705 atomic regions from SNP 87966 to 88566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,443 DEBUG Processing 1/662 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,515 DEBUG Processing 183/675 atomic regions from SNP 54748 to 55348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,633 DEBUG Processing 295/705 atomic regions from SNP 88266 to 88866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,635 DEBUG Processing 661/723 atomic regions from SNP 198226 to 198826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,693 DEBUG Processing 2/662 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,746 DEBUG Processing 184/675 atomic regions from SNP 55048 to 55648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,861 DEBUG Processing 296/705 atomic regions from SNP 88566 to 89166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,896 DEBUG Processing 662/723 atomic regions from SNP 198526 to 199126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,951 DEBUG Processing 3/662 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,002 DEBUG Processing 185/675 atomic regions from SNP 55348 to 55948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,086 DEBUG Processing 297/705 atomic regions from SNP 88866 to 89466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,135 DEBUG Processing 663/723 atomic regions from SNP 198826 to 199426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,195 DEBUG Processing 4/662 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,250 DEBUG Processing 186/675 atomic regions from SNP 55648 to 56248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,320 DEBUG Processing 298/705 atomic regions from SNP 89166 to 89766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,392 DEBUG Processing 664/723 atomic regions from SNP 199126 to 199726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,455 DEBUG Processing 5/662 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,511 DEBUG Processing 187/675 atomic regions from SNP 55948 to 56548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,574 DEBUG Processing 299/705 atomic regions from SNP 89466 to 90066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,640 DEBUG Processing 665/723 atomic regions from SNP 199426 to 200026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,720 DEBUG Processing 6/662 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,761 DEBUG Processing 188/675 atomic regions from SNP 56248 to 56848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,814 DEBUG Processing 300/705 atomic regions from SNP 89766 to 90366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,890 DEBUG Processing 666/723 atomic regions from SNP 199726 to 200326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,980 DEBUG Processing 7/662 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,017 DEBUG Processing 189/675 atomic regions from SNP 56548 to 57148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,043 DEBUG Processing 301/705 atomic regions from SNP 90066 to 90666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,125 DEBUG Processing 667/723 atomic regions from SNP 200026 to 200626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,224 DEBUG Processing 8/662 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,246 DEBUG Processing 190/675 atomic regions from SNP 56848 to 57448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,294 DEBUG Processing 302/705 atomic regions from SNP 90366 to 90966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,362 DEBUG Processing 668/723 atomic regions from SNP 200326 to 200926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,455 DEBUG Processing 9/662 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,474 DEBUG Processing 191/675 atomic regions from SNP 57148 to 57748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,545 DEBUG Processing 303/705 atomic regions from SNP 90666 to 91266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,607 DEBUG Processing 669/723 atomic regions from SNP 200626 to 201226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,692 DEBUG Processing 10/662 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,702 DEBUG Processing 192/675 atomic regions from SNP 57448 to 58048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,781 DEBUG Processing 304/705 atomic regions from SNP 90966 to 91566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,852 DEBUG Processing 670/723 atomic regions from SNP 200926 to 201526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,930 DEBUG Processing 193/675 atomic regions from SNP 57748 to 58348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,953 DEBUG Processing 11/662 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,017 DEBUG Processing 305/705 atomic regions from SNP 91266 to 91866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,088 DEBUG Processing 671/723 atomic regions from SNP 201226 to 201826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,159 DEBUG Processing 194/675 atomic regions from SNP 58048 to 58648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,217 DEBUG Processing 12/662 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,256 DEBUG Processing 306/705 atomic regions from SNP 91566 to 92166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,329 DEBUG Processing 672/723 atomic regions from SNP 201526 to 202126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,388 DEBUG Processing 195/675 atomic regions from SNP 58348 to 58948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,459 DEBUG Processing 13/662 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,498 DEBUG Processing 307/705 atomic regions from SNP 91866 to 92466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,567 DEBUG Processing 673/723 atomic regions from SNP 201826 to 202426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,615 DEBUG Processing 196/675 atomic regions from SNP 58648 to 59248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,695 DEBUG Processing 14/662 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,743 DEBUG Processing 308/705 atomic regions from SNP 92166 to 92766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,806 DEBUG Processing 674/723 atomic regions from SNP 202126 to 202726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,840 DEBUG Processing 197/675 atomic regions from SNP 58948 to 59548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,930 DEBUG Processing 15/662 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,982 DEBUG Processing 309/705 atomic regions from SNP 92466 to 93066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,049 DEBUG Processing 675/723 atomic regions from SNP 202426 to 203026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,072 DEBUG Processing 198/675 atomic regions from SNP 59248 to 59848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,172 DEBUG Processing 16/662 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,225 DEBUG Processing 310/705 atomic regions from SNP 92766 to 93366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,285 DEBUG Processing 676/723 atomic regions from SNP 202726 to 203326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,326 DEBUG Processing 199/675 atomic regions from SNP 59548 to 60148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,402 DEBUG Processing 17/662 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,464 DEBUG Processing 311/705 atomic regions from SNP 93066 to 93666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,519 DEBUG Processing 677/723 atomic regions from SNP 203026 to 203626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,595 DEBUG Processing 200/675 atomic regions from SNP 59848 to 60448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,642 DEBUG Processing 18/662 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,704 DEBUG Processing 312/705 atomic regions from SNP 93366 to 93966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,754 DEBUG Processing 678/723 atomic regions from SNP 203326 to 203926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,848 DEBUG Processing 201/675 atomic regions from SNP 60148 to 60748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,882 DEBUG Processing 19/662 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,950 DEBUG Processing 313/705 atomic regions from SNP 93666 to 94266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,997 DEBUG Processing 679/723 atomic regions from SNP 203626 to 204226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,079 DEBUG Processing 202/675 atomic regions from SNP 60448 to 61048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,120 DEBUG Processing 20/662 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,190 DEBUG Processing 314/705 atomic regions from SNP 93966 to 94566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,236 DEBUG Processing 680/723 atomic regions from SNP 203926 to 204526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,313 DEBUG Processing 203/675 atomic regions from SNP 60748 to 61348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,353 DEBUG Processing 21/662 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,451 DEBUG Processing 315/705 atomic regions from SNP 94266 to 94866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,475 DEBUG Processing 681/723 atomic regions from SNP 204226 to 204826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,566 DEBUG Processing 204/675 atomic regions from SNP 61048 to 61648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,584 DEBUG Processing 22/662 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,712 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:56:33,713 DEBUG Processing 682/723 atomic regions from SNP 204526 to 205126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,713 DEBUG Processing 316/705 atomic regions from SNP 94566 to 95166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,714 DEBUG chr15: Signal quantile: 0.988. signal threshold: 15. Best RMSEA: 0.010 2025-01-31 09:56:33,817 DEBUG Processing 23/662 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,821 DEBUG Processing 205/675 atomic regions from SNP 61348 to 61948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,954 DEBUG Processing 683/723 atomic regions from SNP 204826 to 205426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,962 DEBUG Processing 317/705 atomic regions from SNP 94866 to 95466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,053 DEBUG Processing 24/662 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,060 DEBUG Processing 206/675 atomic regions from SNP 61648 to 62248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,201 DEBUG Processing 684/723 atomic regions from SNP 205126 to 205726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,218 DEBUG Processing 318/705 atomic regions from SNP 95166 to 95766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,290 DEBUG Processing 25/662 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,293 DEBUG Processing 207/675 atomic regions from SNP 61948 to 62548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,435 DEBUG Processing 685/723 atomic regions from SNP 205426 to 206026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,473 DEBUG Processing 319/705 atomic regions from SNP 95466 to 96066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,527 DEBUG Processing 26/662 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,530 DEBUG Processing 208/675 atomic regions from SNP 62248 to 62848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,693 DEBUG Processing 686/723 atomic regions from SNP 205726 to 206326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,724 DEBUG Processing 320/705 atomic regions from SNP 95766 to 96366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,775 DEBUG Processing 209/675 atomic regions from SNP 62548 to 63148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,777 DEBUG Processing 27/662 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,928 DEBUG Processing 687/723 atomic regions from SNP 206026 to 206626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,958 DEBUG Processing 321/705 atomic regions from SNP 96066 to 96666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,018 DEBUG Processing 210/675 atomic regions from SNP 62848 to 63448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,018 DEBUG Processing 28/662 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,165 DEBUG Processing 688/723 atomic regions from SNP 206326 to 206926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,200 DEBUG Processing 322/705 atomic regions from SNP 96366 to 96966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,260 DEBUG Processing 29/662 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,261 DEBUG Processing 211/675 atomic regions from SNP 63148 to 63748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,415 DEBUG Processing 689/723 atomic regions from SNP 206626 to 207226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,464 DEBUG Processing 323/705 atomic regions from SNP 96666 to 97266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,496 DEBUG Processing 30/662 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,499 DEBUG Processing 212/675 atomic regions from SNP 63448 to 64048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,660 DEBUG Processing 690/723 atomic regions from SNP 206926 to 207526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,727 DEBUG chr15 total SNP count: 179294 2025-01-31 09:56:35,728 DEBUG chr15 length: 104043685 2025-01-31 09:56:35,728 DEBUG ----------------------------------------- 2025-01-31 09:56:35,728 INFO Processing SNPs in chr15 2025-01-31 09:56:35,742 DEBUG Processing 31/662 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,743 DEBUG Processing 324/705 atomic regions from SNP 96966 to 97566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,748 DEBUG Processing 213/675 atomic regions from SNP 63748 to 64348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,895 DEBUG Processing 691/723 atomic regions from SNP 207226 to 207826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,917 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 179294)] 2025-01-31 09:56:35,992 DEBUG Processing 32/662 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,001 DEBUG Processing 214/675 atomic regions from SNP 64048 to 64648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,017 DEBUG Processing 325/705 atomic regions from SNP 97266 to 97866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,049 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:36,132 DEBUG Processing 692/723 atomic regions from SNP 207526 to 208126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,237 DEBUG Processing 215/675 atomic regions from SNP 64348 to 64948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,255 DEBUG Processing 33/662 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,266 DEBUG Processing 326/705 atomic regions from SNP 97566 to 98166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,381 DEBUG Processing 693/723 atomic regions from SNP 207826 to 208426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,471 DEBUG Processing 216/675 atomic regions from SNP 64648 to 65248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,510 DEBUG Processing 327/705 atomic regions from SNP 97866 to 98466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,513 DEBUG Processing 34/662 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,638 DEBUG Processing 694/723 atomic regions from SNP 208126 to 208726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,702 DEBUG Processing 217/675 atomic regions from SNP 64948 to 65548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,750 DEBUG Processing 35/662 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,763 DEBUG Processing 328/705 atomic regions from SNP 98166 to 98766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,900 DEBUG Processing 695/723 atomic regions from SNP 208426 to 209026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,942 DEBUG Processing 218/675 atomic regions from SNP 65248 to 65848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,987 DEBUG Processing 36/662 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,025 DEBUG Processing 329/705 atomic regions from SNP 98466 to 99066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,146 DEBUG Processing 696/723 atomic regions from SNP 208726 to 209326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,191 DEBUG Processing 219/675 atomic regions from SNP 65548 to 66148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,221 DEBUG Processing 37/662 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,285 DEBUG Processing 330/705 atomic regions from SNP 98766 to 99366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,379 DEBUG Processing 697/723 atomic regions from SNP 209026 to 209626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,439 DEBUG Processing 220/675 atomic regions from SNP 65848 to 66448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,456 DEBUG Processing 38/662 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,548 DEBUG Processing 331/705 atomic regions from SNP 99066 to 99666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,632 DEBUG Processing 698/723 atomic regions from SNP 209326 to 209926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,688 DEBUG Processing 39/662 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,688 DEBUG Processing 221/675 atomic regions from SNP 66148 to 66748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,793 DEBUG Processing 332/705 atomic regions from SNP 99366 to 99966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,901 DEBUG Processing 699/723 atomic regions from SNP 209626 to 210226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,920 DEBUG Processing 40/662 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,929 DEBUG Processing 222/675 atomic regions from SNP 66448 to 67048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,049 DEBUG Processing 333/705 atomic regions from SNP 99666 to 100266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,153 DEBUG Processing 41/662 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,155 DEBUG Processing 700/723 atomic regions from SNP 209926 to 210526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,162 DEBUG Processing 223/675 atomic regions from SNP 66748 to 67348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,305 DEBUG Processing 334/705 atomic regions from SNP 99966 to 100566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,391 DEBUG Processing 42/662 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,404 DEBUG Processing 224/675 atomic regions from SNP 67048 to 67648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,417 DEBUG Processing 701/723 atomic regions from SNP 210226 to 210826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,562 DEBUG Processing 335/705 atomic regions from SNP 100266 to 100866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,625 DEBUG Processing 43/662 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,636 DEBUG Processing 225/675 atomic regions from SNP 67348 to 67948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,684 DEBUG Processing 702/723 atomic regions from SNP 210526 to 211126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,807 DEBUG Processing 336/705 atomic regions from SNP 100566 to 101166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,861 DEBUG Processing 44/662 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,869 DEBUG Processing 226/675 atomic regions from SNP 67648 to 68248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,936 DEBUG Processing 703/723 atomic regions from SNP 210826 to 211426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,050 DEBUG Processing 337/705 atomic regions from SNP 100866 to 101466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,100 DEBUG Processing 45/662 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,104 DEBUG Processing 227/675 atomic regions from SNP 67948 to 68548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,191 DEBUG Processing 704/723 atomic regions from SNP 211126 to 211726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,295 DEBUG Processing 338/705 atomic regions from SNP 101166 to 101766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,334 DEBUG Processing 46/662 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,338 DEBUG Processing 228/675 atomic regions from SNP 68248 to 68848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,438 DEBUG Processing 705/723 atomic regions from SNP 211426 to 212026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,546 DEBUG Processing 339/705 atomic regions from SNP 101466 to 102066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,567 DEBUG Processing 47/662 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,570 DEBUG Processing 229/675 atomic regions from SNP 68548 to 69148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,693 DEBUG Processing 706/723 atomic regions from SNP 211726 to 212326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,794 DEBUG Processing 340/705 atomic regions from SNP 101766 to 102366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,802 DEBUG Processing 48/662 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,806 DEBUG Processing 230/675 atomic regions from SNP 68848 to 69448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,962 DEBUG Processing 707/723 atomic regions from SNP 212026 to 212626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,034 DEBUG Processing 341/705 atomic regions from SNP 102066 to 102666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,039 DEBUG Processing 49/662 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,042 DEBUG Processing 231/675 atomic regions from SNP 69148 to 69748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,212 DEBUG Processing 708/723 atomic regions from SNP 212326 to 212926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,272 DEBUG Processing 342/705 atomic regions from SNP 102366 to 102966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,281 DEBUG Processing 50/662 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,304 DEBUG Processing 232/675 atomic regions from SNP 69448 to 70048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,489 DEBUG Processing 709/723 atomic regions from SNP 212626 to 213226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,524 DEBUG Processing 343/705 atomic regions from SNP 102666 to 103266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,533 DEBUG Processing 51/662 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,575 DEBUG Processing 233/675 atomic regions from SNP 69748 to 70348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,763 DEBUG Processing 710/723 atomic regions from SNP 212926 to 213526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,779 DEBUG Processing 344/705 atomic regions from SNP 102966 to 103566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,803 DEBUG Processing 52/662 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,840 DEBUG Processing 234/675 atomic regions from SNP 70048 to 70648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,032 DEBUG Processing 711/723 atomic regions from SNP 213226 to 213826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,048 DEBUG Processing 53/662 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,056 DEBUG Processing 345/705 atomic regions from SNP 103266 to 103866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,097 DEBUG Processing 235/675 atomic regions from SNP 70348 to 70948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,288 DEBUG Processing 712/723 atomic regions from SNP 213526 to 214126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,290 DEBUG Processing 54/662 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,308 DEBUG Processing 346/705 atomic regions from SNP 103566 to 104166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,336 DEBUG Processing 236/675 atomic regions from SNP 70648 to 71248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,531 DEBUG Processing 55/662 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,548 DEBUG Processing 347/705 atomic regions from SNP 103866 to 104466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,553 DEBUG Processing 713/723 atomic regions from SNP 213826 to 214426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,574 DEBUG Processing 237/675 atomic regions from SNP 70948 to 71548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,775 DEBUG Processing 56/662 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,792 DEBUG Processing 348/705 atomic regions from SNP 104166 to 104766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,807 DEBUG Processing 714/723 atomic regions from SNP 214126 to 214726 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,817 DEBUG Processing 238/675 atomic regions from SNP 71248 to 71848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,025 DEBUG Processing 57/662 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,036 DEBUG Processing 349/705 atomic regions from SNP 104466 to 105066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,065 DEBUG Processing 239/675 atomic regions from SNP 71548 to 72148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,065 DEBUG Processing 715/723 atomic regions from SNP 214426 to 215026 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,269 DEBUG Processing 58/662 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,285 DEBUG Processing 350/705 atomic regions from SNP 104766 to 105366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,313 DEBUG Processing 240/675 atomic regions from SNP 71848 to 72448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,319 DEBUG Processing 716/723 atomic regions from SNP 214726 to 215326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,511 DEBUG Processing 59/662 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,525 DEBUG Processing 351/705 atomic regions from SNP 105066 to 105666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,565 DEBUG Processing 241/675 atomic regions from SNP 72148 to 72748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,569 DEBUG Processing 717/723 atomic regions from SNP 215026 to 215626 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,748 DEBUG Processing 60/662 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,764 DEBUG Processing 352/705 atomic regions from SNP 105366 to 105966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,834 DEBUG Processing 718/723 atomic regions from SNP 215326 to 215926 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,838 DEBUG Processing 242/675 atomic regions from SNP 72448 to 73048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,983 DEBUG Processing 61/662 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,998 DEBUG Processing 353/705 atomic regions from SNP 105666 to 106266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,091 DEBUG Processing 243/675 atomic regions from SNP 72748 to 73348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,097 DEBUG Processing 719/723 atomic regions from SNP 215626 to 216226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,211 DEBUG Processing 62/662 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,230 DEBUG Processing 354/705 atomic regions from SNP 105966 to 106566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,340 DEBUG Processing 244/675 atomic regions from SNP 73048 to 73648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,350 DEBUG Processing 720/723 atomic regions from SNP 215926 to 216526 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,445 DEBUG Processing 63/662 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,468 DEBUG Processing 355/705 atomic regions from SNP 106266 to 106866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,579 DEBUG Processing 245/675 atomic regions from SNP 73348 to 73948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,595 DEBUG Processing 721/723 atomic regions from SNP 216226 to 216826 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,678 DEBUG Processing 64/662 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,704 DEBUG Processing 356/705 atomic regions from SNP 106566 to 107166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,814 DEBUG Processing 246/675 atomic regions from SNP 73648 to 74248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,841 DEBUG Processing 722/723 atomic regions from SNP 216526 to 217126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,917 DEBUG Processing 65/662 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,940 DEBUG Processing 357/705 atomic regions from SNP 106866 to 107466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,068 DEBUG Processing 247/675 atomic regions from SNP 73948 to 74548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,078 DEBUG Processing 723/723 atomic regions from SNP 216826 to 217426 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,152 DEBUG Processing 66/662 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,175 DEBUG Processing 358/705 atomic regions from SNP 107166 to 107766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,240 DEBUG Unique SNPs positions in subchromosome 1: 217427 2025-01-31 09:56:44,319 DEBUG Processing 248/675 atomic regions from SNP 74248 to 74848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,396 DEBUG Processing 67/662 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,415 DEBUG Processing 359/705 atomic regions from SNP 107466 to 108066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,564 DEBUG Processing 249/675 atomic regions from SNP 74548 to 75148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,640 DEBUG Processing 68/662 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,651 DEBUG Processing 360/705 atomic regions from SNP 107766 to 108366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,815 DEBUG Processing 250/675 atomic regions from SNP 74848 to 75448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,869 DEBUG Processing 69/662 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,877 DEBUG Processing 361/705 atomic regions from SNP 108066 to 108666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,042 DEBUG Processing 251/675 atomic regions from SNP 75148 to 75748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,116 DEBUG Processing 362/705 atomic regions from SNP 108366 to 108966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,118 DEBUG Processing 70/662 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,274 DEBUG Processing 252/675 atomic regions from SNP 75448 to 76048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,353 DEBUG Processing 363/705 atomic regions from SNP 108666 to 109266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,355 DEBUG Processing 71/662 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,506 DEBUG Processing 253/675 atomic regions from SNP 75748 to 76348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,588 DEBUG Processing 364/705 atomic regions from SNP 108966 to 109566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,590 DEBUG Processing 72/662 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,748 DEBUG Processing 254/675 atomic regions from SNP 76048 to 76648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,822 DEBUG Processing 365/705 atomic regions from SNP 109266 to 109866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,825 DEBUG Processing 73/662 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,001 DEBUG Processing 255/675 atomic regions from SNP 76348 to 76948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,056 DEBUG Processing 366/705 atomic regions from SNP 109566 to 110166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,057 DEBUG Processing 74/662 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,236 DEBUG Processing 256/675 atomic regions from SNP 76648 to 77248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,287 DEBUG Processing 367/705 atomic regions from SNP 109866 to 110466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,287 DEBUG Processing 75/662 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,500 DEBUG Processing 257/675 atomic regions from SNP 76948 to 77548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,521 DEBUG Processing 368/705 atomic regions from SNP 110166 to 110766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,521 DEBUG Processing 76/662 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,746 DEBUG Processing 258/675 atomic regions from SNP 77248 to 77848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,753 DEBUG Processing 369/705 atomic regions from SNP 110466 to 111066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,756 DEBUG Processing 77/662 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,980 DEBUG Processing 259/675 atomic regions from SNP 77548 to 78148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,988 DEBUG Processing 370/705 atomic regions from SNP 110766 to 111366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,990 DEBUG Processing 78/662 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,212 DEBUG Processing 260/675 atomic regions from SNP 77848 to 78448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,226 DEBUG Processing 371/705 atomic regions from SNP 111066 to 111666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,227 DEBUG Processing 79/662 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,449 DEBUG Processing 261/675 atomic regions from SNP 78148 to 78748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,463 DEBUG Processing 372/705 atomic regions from SNP 111366 to 111966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,464 DEBUG Processing 80/662 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,684 DEBUG Processing 262/675 atomic regions from SNP 78448 to 79048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,696 DEBUG Processing 373/705 atomic regions from SNP 111666 to 112266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,703 DEBUG Processing 81/662 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,918 DEBUG Processing 263/675 atomic regions from SNP 78748 to 79348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,928 DEBUG Processing 374/705 atomic regions from SNP 111966 to 112566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,959 DEBUG Processing 82/662 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,168 DEBUG Processing 264/675 atomic regions from SNP 79048 to 79648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,171 DEBUG Processing 375/705 atomic regions from SNP 112266 to 112866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,209 DEBUG Processing 83/662 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,407 DEBUG Processing 376/705 atomic regions from SNP 112566 to 113166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,411 DEBUG Processing 265/675 atomic regions from SNP 79348 to 79948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,453 DEBUG Processing 84/662 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,643 DEBUG Processing 377/705 atomic regions from SNP 112866 to 113466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,686 DEBUG Processing 266/675 atomic regions from SNP 79648 to 80248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,719 DEBUG Processing 85/662 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,877 DEBUG Processing 378/705 atomic regions from SNP 113166 to 113766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,947 DEBUG Processing 267/675 atomic regions from SNP 79948 to 80548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,986 DEBUG Processing 86/662 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,105 DEBUG Processing 379/705 atomic regions from SNP 113466 to 114066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,216 DEBUG Processing 268/675 atomic regions from SNP 80248 to 80848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,244 DEBUG Processing 87/662 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,336 DEBUG Processing 380/705 atomic regions from SNP 113766 to 114366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,482 DEBUG Processing 88/662 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,486 DEBUG Processing 269/675 atomic regions from SNP 80548 to 81148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,572 DEBUG Processing 381/705 atomic regions from SNP 114066 to 114666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,717 DEBUG Processing 89/662 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,754 DEBUG Processing 270/675 atomic regions from SNP 80848 to 81448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,815 DEBUG Processing 382/705 atomic regions from SNP 114366 to 114966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,955 DEBUG Processing 90/662 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,033 DEBUG Processing 271/675 atomic regions from SNP 81148 to 81748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,067 DEBUG Processing 383/705 atomic regions from SNP 114666 to 115266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,193 DEBUG Processing 91/662 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,292 DEBUG Processing 272/675 atomic regions from SNP 81448 to 82048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,333 DEBUG Processing 384/705 atomic regions from SNP 114966 to 115566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,441 DEBUG Processing 92/662 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,545 DEBUG Processing 273/675 atomic regions from SNP 81748 to 82348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,600 DEBUG Processing 385/705 atomic regions from SNP 115266 to 115866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,672 DEBUG Processing 93/662 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,778 DEBUG Processing 274/675 atomic regions from SNP 82048 to 82648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,856 DEBUG Processing 386/705 atomic regions from SNP 115566 to 116166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,902 DEBUG Processing 94/662 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,009 DEBUG Processing 275/675 atomic regions from SNP 82348 to 82948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,110 DEBUG Processing 387/705 atomic regions from SNP 115866 to 116466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,132 DEBUG Processing 95/662 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,242 DEBUG Processing 276/675 atomic regions from SNP 82648 to 83248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,363 DEBUG Processing 96/662 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,379 DEBUG Processing 388/705 atomic regions from SNP 116166 to 116766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,483 DEBUG Processing 277/675 atomic regions from SNP 82948 to 83548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,609 DEBUG Processing 97/662 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,650 DEBUG Processing 389/705 atomic regions from SNP 116466 to 117066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,713 DEBUG Processing 278/675 atomic regions from SNP 83248 to 83848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,854 DEBUG Processing 98/662 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,911 DEBUG Processing 390/705 atomic regions from SNP 116766 to 117366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,962 DEBUG Processing 279/675 atomic regions from SNP 83548 to 84148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,093 DEBUG Processing 99/662 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,168 DEBUG Processing 391/705 atomic regions from SNP 117066 to 117666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,198 DEBUG Processing 280/675 atomic regions from SNP 83848 to 84448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,328 DEBUG Processing 100/662 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,432 DEBUG Processing 392/705 atomic regions from SNP 117366 to 117966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,438 DEBUG Processing 281/675 atomic regions from SNP 84148 to 84748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,559 DEBUG Processing 101/662 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,681 DEBUG Processing 393/705 atomic regions from SNP 117666 to 118266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,685 DEBUG Processing 282/675 atomic regions from SNP 84448 to 85048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,814 DEBUG Processing 102/662 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,947 DEBUG Processing 283/675 atomic regions from SNP 84748 to 85348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,948 DEBUG Processing 394/705 atomic regions from SNP 117966 to 118566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,083 DEBUG Processing 103/662 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,205 DEBUG Processing 284/675 atomic regions from SNP 85048 to 85648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,211 DEBUG Processing 395/705 atomic regions from SNP 118266 to 118866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,340 DEBUG Processing 104/662 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,440 DEBUG Processing 285/675 atomic regions from SNP 85348 to 85948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,444 DEBUG Processing 396/705 atomic regions from SNP 118566 to 119166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,588 DEBUG Processing 105/662 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,671 DEBUG Processing 286/675 atomic regions from SNP 85648 to 86248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,678 DEBUG Processing 397/705 atomic regions from SNP 118866 to 119466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,843 DEBUG Processing 106/662 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,911 DEBUG Processing 287/675 atomic regions from SNP 85948 to 86548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,924 DEBUG Processing 398/705 atomic regions from SNP 119166 to 119766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,069 DEBUG Processing 107/662 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,145 DEBUG Processing 288/675 atomic regions from SNP 86248 to 86848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,160 DEBUG Processing 399/705 atomic regions from SNP 119466 to 120066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,292 DEBUG Processing 108/662 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,382 DEBUG Processing 289/675 atomic regions from SNP 86548 to 87148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,403 DEBUG Processing 400/705 atomic regions from SNP 119766 to 120366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,517 DEBUG Processing 109/662 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,577 DEBUG Subchromosome time: 212.38299882493448, subchromosome SNPs: 217427 2025-01-31 09:56:54,577 DEBUG Estimated BADs: [0.44, 2.65, 0.44, 1.33, 0.66, 5.31, 1.33, 0.66, 1.33, 0.44, 1.33, 0.27, 1.33, 2.65, 1.33, 3.98, 1.33, 2.65, 1.33, 0.33, 1.33, 0.66, 1.33, 0.33, 1.33, 2.65, 5.31, 0.66, 2.65, 1.33, 2.65] SNP counts: [7795, 423, 8794, 3599, 9107, 3186, 2511, 13218, 3527, 3728, 4729, 3555, 5975, 5486, 19800, 5686, 2838, 10749, 17015, 1494, 3289, 18832, 792, 5589, 22588, 2019, 3459, 1096, 1743, 15600, 9205] SNP IDs counts: [7795, 423, 8794, 3599, 9107, 3186, 2511, 13218, 3527, 3728, 4729, 3555, 5975, 5486, 19800, 5686, 2838, 10749, 17015, 1494, 3289, 18832, 792, 5589, 22588, 2019, 3459, 1096, 1743, 15600, 9205] Critical gap: 598462bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 7.71Mbp, 7.95Mbp, 13.19Mbp, 15.24Mbp, 20.64Mbp, 22.33Mbp, 23.72Mbp, 31.03Mbp, 32.92Mbp, 34.99Mbp, 37.75Mbp, 39.89Mbp, 43.10Mbp, 45.98Mbp, 56.75Mbp, 59.75Mbp, 61.25Mbp, 66.91Mbp, 76.16Mbp, 77.00Mbp, 78.86Mbp, 90.11Mbp, 90.57Mbp, 93.90Mbp, 106.15Mbp, 107.26Mbp, 109.12Mbp, 109.86Mbp, 110.78Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:56:54,577 DEBUG chr9 time: 212.38360624189954 s 2025-01-31 09:56:54,631 DEBUG Processing 290/675 atomic regions from SNP 86848 to 87448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,647 DEBUG Processing 401/705 atomic regions from SNP 120066 to 120666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,729 DEBUG chr9: Fitting background model for 31 segments 2025-01-31 09:56:54,747 DEBUG Processing 110/662 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,884 DEBUG Processing 291/675 atomic regions from SNP 87148 to 87748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,898 DEBUG Processing 402/705 atomic regions from SNP 120366 to 120966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,989 DEBUG Processing 111/662 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,131 DEBUG Processing 292/675 atomic regions from SNP 87448 to 88048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,155 DEBUG Processing 403/705 atomic regions from SNP 120666 to 121266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,227 DEBUG Processing 112/662 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,374 DEBUG Processing 293/675 atomic regions from SNP 87748 to 88348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,398 DEBUG Processing 404/705 atomic regions from SNP 120966 to 121566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,463 DEBUG Processing 113/662 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,607 DEBUG Processing 294/675 atomic regions from SNP 88048 to 88648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,663 DEBUG Processing 405/705 atomic regions from SNP 121266 to 121866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,689 DEBUG Processing 114/662 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,836 DEBUG Processing 295/675 atomic regions from SNP 88348 to 88948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,917 DEBUG Processing 406/705 atomic regions from SNP 121566 to 122166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,918 DEBUG Processing 115/662 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,070 DEBUG Processing 296/675 atomic regions from SNP 88648 to 89248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,151 DEBUG Processing 407/705 atomic regions from SNP 121866 to 122466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,151 DEBUG Processing 116/662 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,301 DEBUG Processing 297/675 atomic regions from SNP 88948 to 89548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,386 DEBUG Processing 117/662 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,390 DEBUG Processing 408/705 atomic regions from SNP 122166 to 122766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,539 DEBUG Processing 298/675 atomic regions from SNP 89248 to 89848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,616 DEBUG Processing 118/662 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,644 DEBUG Processing 409/705 atomic regions from SNP 122466 to 123066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,773 DEBUG Processing 299/675 atomic regions from SNP 89548 to 90148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,859 DEBUG Processing 119/662 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,883 DEBUG Processing 410/705 atomic regions from SNP 122766 to 123366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,024 DEBUG Processing 300/675 atomic regions from SNP 89848 to 90448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,089 DEBUG Processing 120/662 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,118 DEBUG Processing 411/705 atomic regions from SNP 123066 to 123666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,284 DEBUG Processing 301/675 atomic regions from SNP 90148 to 90748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,320 DEBUG Processing 121/662 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,361 DEBUG Processing 412/705 atomic regions from SNP 123366 to 123966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,558 DEBUG Processing 302/675 atomic regions from SNP 90448 to 91048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,559 DEBUG Processing 122/662 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,603 DEBUG Processing 413/705 atomic regions from SNP 123666 to 124266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,798 DEBUG Processing 123/662 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,825 DEBUG Processing 303/675 atomic regions from SNP 90748 to 91348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,847 DEBUG Processing 414/705 atomic regions from SNP 123966 to 124566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,033 DEBUG Processing 124/662 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,085 DEBUG Processing 415/705 atomic regions from SNP 124266 to 124866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,092 DEBUG Processing 304/675 atomic regions from SNP 91048 to 91648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,266 DEBUG Processing 125/662 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,321 DEBUG Processing 416/705 atomic regions from SNP 124566 to 125166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,362 DEBUG Processing 305/675 atomic regions from SNP 91348 to 91948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,408 DEBUG Segmenting atomic regions: 2025-01-31 09:56:58,491 DEBUG Processing 1/596 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,496 DEBUG Processing 126/662 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,561 DEBUG Processing 417/705 atomic regions from SNP 124866 to 125466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,635 DEBUG Processing 306/675 atomic regions from SNP 91648 to 92248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,697 DEBUG Processing 2/596 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,745 DEBUG Processing 127/662 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,815 DEBUG Processing 418/705 atomic regions from SNP 125166 to 125766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,897 DEBUG Processing 3/596 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,906 DEBUG Processing 307/675 atomic regions from SNP 91948 to 92548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,995 DEBUG Processing 128/662 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,079 DEBUG Processing 419/705 atomic regions from SNP 125466 to 126066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,103 DEBUG Processing 4/596 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,171 DEBUG Processing 308/675 atomic regions from SNP 92248 to 92848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,231 DEBUG Processing 129/662 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,309 DEBUG Processing 5/596 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,316 DEBUG Processing 420/705 atomic regions from SNP 125766 to 126366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,421 DEBUG Processing 309/675 atomic regions from SNP 92548 to 93148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,471 DEBUG Processing 130/662 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,514 DEBUG Processing 6/596 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,577 DEBUG Processing 421/705 atomic regions from SNP 126066 to 126666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,662 DEBUG Processing 310/675 atomic regions from SNP 92848 to 93448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,712 DEBUG Processing 131/662 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,726 DEBUG Processing 7/596 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,850 DEBUG Processing 422/705 atomic regions from SNP 126366 to 126966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,908 DEBUG Processing 311/675 atomic regions from SNP 93148 to 93748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,945 DEBUG Processing 8/596 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,952 DEBUG Processing 132/662 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,125 DEBUG Processing 423/705 atomic regions from SNP 126666 to 127266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,150 DEBUG Processing 312/675 atomic regions from SNP 93448 to 94048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,156 DEBUG Processing 9/596 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,195 DEBUG Processing 133/662 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,368 DEBUG Processing 10/596 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,386 DEBUG Processing 313/675 atomic regions from SNP 93748 to 94348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,393 DEBUG Processing 424/705 atomic regions from SNP 126966 to 127566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,434 DEBUG Processing 134/662 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,576 DEBUG Processing 11/596 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,624 DEBUG Processing 314/675 atomic regions from SNP 94048 to 94648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,656 DEBUG Processing 425/705 atomic regions from SNP 127266 to 127866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,675 DEBUG Processing 135/662 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,804 DEBUG Processing 12/596 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,859 DEBUG Processing 315/675 atomic regions from SNP 94348 to 94948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,916 DEBUG Processing 136/662 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,920 DEBUG Processing 426/705 atomic regions from SNP 127566 to 128166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,031 DEBUG Processing 13/596 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,083 DEBUG Processing 316/675 atomic regions from SNP 94648 to 95248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,156 DEBUG Processing 137/662 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,173 DEBUG Processing 427/705 atomic regions from SNP 127866 to 128466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,239 DEBUG Processing 14/596 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,308 DEBUG Processing 317/675 atomic regions from SNP 94948 to 95548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,393 DEBUG Processing 138/662 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,429 DEBUG Processing 428/705 atomic regions from SNP 128166 to 128766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,444 DEBUG Processing 15/596 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,469 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:57:01,530 DEBUG Processing 318/675 atomic regions from SNP 95248 to 95848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,632 DEBUG Processing 139/662 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,661 DEBUG Processing 16/596 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,696 DEBUG Processing 429/705 atomic regions from SNP 128466 to 129066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,759 DEBUG Processing 319/675 atomic regions from SNP 95548 to 96148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,866 DEBUG Processing 140/662 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,875 DEBUG Processing 17/596 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,946 DEBUG Processing 430/705 atomic regions from SNP 128766 to 129366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,991 DEBUG Processing 320/675 atomic regions from SNP 95848 to 96448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,083 DEBUG Processing 18/596 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,099 DEBUG Processing 141/662 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,186 DEBUG Processing 431/705 atomic regions from SNP 129066 to 129666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,225 DEBUG Processing 321/675 atomic regions from SNP 96148 to 96748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,302 DEBUG Processing 19/596 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,338 DEBUG Processing 142/662 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,429 DEBUG Processing 432/705 atomic regions from SNP 129366 to 129966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,462 DEBUG Processing 322/675 atomic regions from SNP 96448 to 97048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,503 DEBUG Processing 20/596 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,570 DEBUG Processing 143/662 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,667 DEBUG Processing 433/705 atomic regions from SNP 129666 to 130266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,720 DEBUG Processing 21/596 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,728 DEBUG Processing 323/675 atomic regions from SNP 96748 to 97348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,806 DEBUG Processing 144/662 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,908 DEBUG Processing 434/705 atomic regions from SNP 129966 to 130566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,939 DEBUG Processing 22/596 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,997 DEBUG Processing 324/675 atomic regions from SNP 97048 to 97648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,049 DEBUG Processing 145/662 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,140 DEBUG Processing 23/596 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,167 DEBUG Processing 435/705 atomic regions from SNP 130266 to 130866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,264 DEBUG Processing 325/675 atomic regions from SNP 97348 to 97948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,282 DEBUG Processing 146/662 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,341 DEBUG Processing 24/596 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,420 DEBUG Processing 436/705 atomic regions from SNP 130566 to 131166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,507 DEBUG Processing 147/662 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,523 DEBUG Processing 326/675 atomic regions from SNP 97648 to 98248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,541 DEBUG Processing 25/596 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,673 DEBUG Processing 437/705 atomic regions from SNP 130866 to 131466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,736 DEBUG Processing 26/596 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,747 DEBUG Processing 327/675 atomic regions from SNP 97948 to 98548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,755 DEBUG Processing 148/662 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,932 DEBUG Processing 438/705 atomic regions from SNP 131166 to 131766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,938 DEBUG Processing 27/596 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,997 DEBUG Processing 328/675 atomic regions from SNP 98248 to 98848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,005 DEBUG Processing 149/662 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,140 DEBUG Processing 28/596 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,198 DEBUG Processing 439/705 atomic regions from SNP 131466 to 132066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,236 DEBUG Processing 329/675 atomic regions from SNP 98548 to 99148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,243 DEBUG Processing 150/662 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,349 DEBUG Processing 29/596 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,466 DEBUG Processing 440/705 atomic regions from SNP 131766 to 132366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,477 DEBUG Processing 330/675 atomic regions from SNP 98848 to 99448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,484 DEBUG Processing 151/662 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,580 DEBUG Processing 30/596 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,714 DEBUG Processing 331/675 atomic regions from SNP 99148 to 99748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,735 DEBUG Processing 441/705 atomic regions from SNP 132066 to 132666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,740 DEBUG Processing 152/662 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,784 DEBUG Processing 31/596 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,963 DEBUG Processing 332/675 atomic regions from SNP 99448 to 100048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,987 DEBUG Processing 442/705 atomic regions from SNP 132366 to 132966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,994 DEBUG Processing 32/596 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,005 DEBUG Processing 153/662 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,217 DEBUG Processing 33/596 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,218 DEBUG Processing 443/705 atomic regions from SNP 132666 to 133266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,223 DEBUG Processing 333/675 atomic regions from SNP 99748 to 100348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,249 DEBUG Processing 154/662 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,416 DEBUG Processing 34/596 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,455 DEBUG Processing 444/705 atomic regions from SNP 132966 to 133566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,482 DEBUG Processing 334/675 atomic regions from SNP 100048 to 100648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,504 DEBUG Processing 155/662 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,644 DEBUG Processing 35/596 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,712 DEBUG Processing 445/705 atomic regions from SNP 133266 to 133866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,720 DEBUG Processing 335/675 atomic regions from SNP 100348 to 100948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,766 DEBUG Processing 156/662 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,864 DEBUG Processing 36/596 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,954 DEBUG Processing 336/675 atomic regions from SNP 100648 to 101248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,960 DEBUG Processing 446/705 atomic regions from SNP 133566 to 134166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,009 DEBUG Processing 157/662 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,072 DEBUG Processing 37/596 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,195 DEBUG Processing 447/705 atomic regions from SNP 133866 to 134466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,197 DEBUG Processing 337/675 atomic regions from SNP 100948 to 101548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,246 DEBUG Processing 158/662 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,277 DEBUG Processing 38/596 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,433 DEBUG Processing 448/705 atomic regions from SNP 134166 to 134766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,438 DEBUG Processing 338/675 atomic regions from SNP 101248 to 101848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,482 DEBUG Processing 159/662 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,484 DEBUG Processing 39/596 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,672 DEBUG Processing 339/675 atomic regions from SNP 101548 to 102148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,685 DEBUG Processing 40/596 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,690 DEBUG Processing 449/705 atomic regions from SNP 134466 to 135066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,715 DEBUG Processing 160/662 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,887 DEBUG Processing 41/596 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,906 DEBUG Processing 340/675 atomic regions from SNP 101848 to 102448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,941 DEBUG Processing 450/705 atomic regions from SNP 134766 to 135366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,949 DEBUG Processing 161/662 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,084 DEBUG Processing 42/596 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,137 DEBUG Processing 341/675 atomic regions from SNP 102148 to 102748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,181 DEBUG Processing 162/662 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,191 DEBUG Processing 451/705 atomic regions from SNP 135066 to 135666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,280 DEBUG Processing 43/596 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,368 DEBUG Processing 342/675 atomic regions from SNP 102448 to 103048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,416 DEBUG Processing 163/662 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,436 DEBUG Processing 452/705 atomic regions from SNP 135366 to 135966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,479 DEBUG Processing 44/596 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,595 DEBUG Processing 343/675 atomic regions from SNP 102748 to 103348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,653 DEBUG Processing 164/662 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,683 DEBUG Processing 45/596 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,684 DEBUG Processing 453/705 atomic regions from SNP 135666 to 136266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,848 DEBUG Processing 344/675 atomic regions from SNP 103048 to 103648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,888 DEBUG Processing 46/596 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,890 DEBUG Processing 165/662 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,924 DEBUG Processing 454/705 atomic regions from SNP 135966 to 136566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,073 DEBUG Processing 345/675 atomic regions from SNP 103348 to 103948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,098 DEBUG Processing 47/596 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,125 DEBUG Processing 166/662 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,159 DEBUG Processing 455/705 atomic regions from SNP 136266 to 136866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,290 DEBUG Processing 346/675 atomic regions from SNP 103648 to 104248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,292 DEBUG Processing 48/596 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,358 DEBUG Processing 167/662 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,395 DEBUG Processing 456/705 atomic regions from SNP 136566 to 137166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,486 DEBUG Processing 49/596 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,511 DEBUG Processing 347/675 atomic regions from SNP 103948 to 104548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,595 DEBUG Processing 168/662 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,634 DEBUG Processing 457/705 atomic regions from SNP 136866 to 137466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,681 DEBUG Processing 50/596 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,728 DEBUG Processing 348/675 atomic regions from SNP 104248 to 104848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,838 DEBUG Processing 169/662 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,872 DEBUG Processing 458/705 atomic regions from SNP 137166 to 137766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,880 DEBUG Processing 51/596 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,965 DEBUG Processing 349/675 atomic regions from SNP 104548 to 105148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,069 DEBUG Processing 170/662 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,076 DEBUG Processing 52/596 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,105 DEBUG Processing 459/705 atomic regions from SNP 137466 to 138066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,210 DEBUG Processing 350/675 atomic regions from SNP 104848 to 105448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,291 DEBUG Processing 53/596 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,302 DEBUG Processing 171/662 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,336 DEBUG Processing 460/705 atomic regions from SNP 137766 to 138366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,464 DEBUG Processing 351/675 atomic regions from SNP 105148 to 105748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,523 DEBUG Processing 54/596 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,532 DEBUG Processing 172/662 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,576 DEBUG Processing 461/705 atomic regions from SNP 138066 to 138666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,725 DEBUG Processing 352/675 atomic regions from SNP 105448 to 106048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,745 DEBUG Processing 55/596 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,763 DEBUG Processing 173/662 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,805 DEBUG Processing 462/705 atomic regions from SNP 138366 to 138966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,944 DEBUG Processing 56/596 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,979 DEBUG Processing 353/675 atomic regions from SNP 105748 to 106348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,993 DEBUG Processing 174/662 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,027 DEBUG Processing 463/705 atomic regions from SNP 138666 to 139266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,144 DEBUG Processing 57/596 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,219 DEBUG Processing 354/675 atomic regions from SNP 106048 to 106648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,224 DEBUG Processing 175/662 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,259 DEBUG Processing 464/705 atomic regions from SNP 138966 to 139566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,350 DEBUG Processing 58/596 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,448 DEBUG Processing 176/662 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,461 DEBUG Processing 355/675 atomic regions from SNP 106348 to 106948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,483 DEBUG Processing 465/705 atomic regions from SNP 139266 to 139866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,546 DEBUG Processing 59/596 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,677 DEBUG Processing 177/662 atomic regions from SNP 52976 to 53576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,703 DEBUG Processing 466/705 atomic regions from SNP 139566 to 140166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,709 DEBUG Processing 356/675 atomic regions from SNP 106648 to 107248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,740 DEBUG Processing 60/596 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,898 DEBUG Processing 178/662 atomic regions from SNP 53276 to 53876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,932 DEBUG Processing 467/705 atomic regions from SNP 139866 to 140466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,939 DEBUG Processing 61/596 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,960 DEBUG Processing 357/675 atomic regions from SNP 106948 to 107548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,127 DEBUG Processing 179/662 atomic regions from SNP 53576 to 54176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,137 DEBUG Processing 62/596 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,183 DEBUG Processing 468/705 atomic regions from SNP 140166 to 140766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,204 DEBUG Processing 358/675 atomic regions from SNP 107248 to 107848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,350 DEBUG Processing 63/596 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,359 DEBUG Processing 180/662 atomic regions from SNP 53876 to 54476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,420 DEBUG Processing 469/705 atomic regions from SNP 140466 to 141066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,434 DEBUG Processing 359/675 atomic regions from SNP 107548 to 108148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,558 DEBUG Processing 64/596 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,588 DEBUG Processing 181/662 atomic regions from SNP 54176 to 54776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,655 DEBUG Processing 360/675 atomic regions from SNP 107848 to 108448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,659 DEBUG Processing 470/705 atomic regions from SNP 140766 to 141366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,766 DEBUG Processing 65/596 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,811 DEBUG Processing 182/662 atomic regions from SNP 54476 to 55076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,878 DEBUG Processing 361/675 atomic regions from SNP 108148 to 108748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,885 DEBUG Processing 471/705 atomic regions from SNP 141066 to 141666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,973 DEBUG Processing 66/596 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,032 DEBUG Processing 183/662 atomic regions from SNP 54776 to 55376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,095 DEBUG Processing 362/675 atomic regions from SNP 108448 to 109048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,102 DEBUG Processing 472/705 atomic regions from SNP 141366 to 141966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,177 DEBUG Processing 67/596 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,251 DEBUG Processing 184/662 atomic regions from SNP 55076 to 55676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,316 DEBUG Processing 363/675 atomic regions from SNP 108748 to 109348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,323 DEBUG Processing 473/705 atomic regions from SNP 141666 to 142266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,384 DEBUG Processing 68/596 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,469 DEBUG Processing 185/662 atomic regions from SNP 55376 to 55976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,489 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:57:12,491 DEBUG chr16: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.010 2025-01-31 09:57:12,541 DEBUG Processing 364/675 atomic regions from SNP 109048 to 109648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,547 DEBUG Processing 474/705 atomic regions from SNP 141966 to 142566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,592 DEBUG Processing 69/596 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,690 DEBUG Processing 186/662 atomic regions from SNP 55676 to 56276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,769 DEBUG Processing 365/675 atomic regions from SNP 109348 to 109948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,783 DEBUG Processing 475/705 atomic regions from SNP 142266 to 142866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,800 DEBUG Processing 70/596 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,912 DEBUG Processing 187/662 atomic regions from SNP 55976 to 56576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,995 DEBUG Processing 366/675 atomic regions from SNP 109648 to 110248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,008 DEBUG Processing 71/596 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,027 DEBUG Processing 476/705 atomic regions from SNP 142566 to 143166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,127 DEBUG Processing 188/662 atomic regions from SNP 56276 to 56876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,211 DEBUG Processing 72/596 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,221 DEBUG Processing 367/675 atomic regions from SNP 109948 to 110548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,251 DEBUG Processing 477/705 atomic regions from SNP 142866 to 143466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,341 DEBUG Processing 189/662 atomic regions from SNP 56576 to 57176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,415 DEBUG Processing 73/596 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,451 DEBUG Processing 368/675 atomic regions from SNP 110248 to 110848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,491 DEBUG Processing 478/705 atomic regions from SNP 143166 to 143766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,557 DEBUG Processing 190/662 atomic regions from SNP 56876 to 57476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,621 DEBUG Processing 74/596 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,679 DEBUG Processing 369/675 atomic regions from SNP 110548 to 111148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,742 DEBUG Processing 479/705 atomic regions from SNP 143466 to 144066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,775 DEBUG Processing 191/662 atomic regions from SNP 57176 to 57776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,825 DEBUG Processing 75/596 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,916 DEBUG Processing 370/675 atomic regions from SNP 110848 to 111448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,999 DEBUG Processing 192/662 atomic regions from SNP 57476 to 58076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,001 DEBUG Processing 480/705 atomic regions from SNP 143766 to 144366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,024 DEBUG Processing 76/596 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,140 DEBUG Processing 371/675 atomic regions from SNP 111148 to 111748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,219 DEBUG Processing 77/596 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,225 DEBUG Processing 193/662 atomic regions from SNP 57776 to 58376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,240 DEBUG Processing 481/705 atomic regions from SNP 144066 to 144666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,265 DEBUG chr16 total SNP count: 168736 2025-01-31 09:57:14,265 DEBUG chr16 length: 98207768 2025-01-31 09:57:14,265 DEBUG ----------------------------------------- 2025-01-31 09:57:14,265 INFO Processing SNPs in chr16 2025-01-31 09:57:14,355 DEBUG Processing 372/675 atomic regions from SNP 111448 to 112048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,413 DEBUG Processing 78/596 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,437 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 168736)] 2025-01-31 09:57:14,447 DEBUG Processing 194/662 atomic regions from SNP 58076 to 58676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,467 DEBUG Processing 482/705 atomic regions from SNP 144366 to 144966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,558 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:14,571 DEBUG Processing 373/675 atomic regions from SNP 111748 to 112348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,610 DEBUG Processing 79/596 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,669 DEBUG Processing 195/662 atomic regions from SNP 58376 to 58976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,713 DEBUG Processing 483/705 atomic regions from SNP 144666 to 145266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,783 DEBUG Processing 374/675 atomic regions from SNP 112048 to 112648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,806 DEBUG Processing 80/596 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,890 DEBUG Processing 196/662 atomic regions from SNP 58676 to 59276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,933 DEBUG Processing 484/705 atomic regions from SNP 144966 to 145566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,004 DEBUG Processing 375/675 atomic regions from SNP 112348 to 112948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,005 DEBUG Processing 81/596 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,112 DEBUG Processing 197/662 atomic regions from SNP 58976 to 59576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,151 DEBUG Processing 485/705 atomic regions from SNP 145266 to 145866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,205 DEBUG Processing 82/596 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,221 DEBUG Processing 376/675 atomic regions from SNP 112648 to 113248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,332 DEBUG Processing 198/662 atomic regions from SNP 59276 to 59876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,399 DEBUG Processing 486/705 atomic regions from SNP 145566 to 146166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,410 DEBUG Processing 83/596 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,441 DEBUG Processing 377/675 atomic regions from SNP 112948 to 113548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,551 DEBUG Processing 199/662 atomic regions from SNP 59576 to 60176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,615 DEBUG Processing 84/596 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,633 DEBUG Processing 487/705 atomic regions from SNP 145866 to 146466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,686 DEBUG Processing 378/675 atomic regions from SNP 113248 to 113848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,770 DEBUG Processing 200/662 atomic regions from SNP 59876 to 60476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,822 DEBUG Processing 85/596 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,851 DEBUG Processing 488/705 atomic regions from SNP 146166 to 146766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,933 DEBUG Processing 379/675 atomic regions from SNP 113548 to 114148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,993 DEBUG Processing 201/662 atomic regions from SNP 60176 to 60776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,024 DEBUG Processing 86/596 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,069 DEBUG Processing 489/705 atomic regions from SNP 146466 to 147066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,155 DEBUG Processing 380/675 atomic regions from SNP 113848 to 114448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,212 DEBUG Processing 202/662 atomic regions from SNP 60476 to 61076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,227 DEBUG Processing 87/596 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,296 DEBUG Processing 490/705 atomic regions from SNP 146766 to 147366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,372 DEBUG Processing 381/675 atomic regions from SNP 114148 to 114748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,432 DEBUG Processing 88/596 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,433 DEBUG Processing 203/662 atomic regions from SNP 60776 to 61376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,524 DEBUG Processing 491/705 atomic regions from SNP 147066 to 147666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,591 DEBUG Processing 382/675 atomic regions from SNP 114448 to 115048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,639 DEBUG Processing 89/596 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,663 DEBUG Processing 204/662 atomic regions from SNP 61076 to 61676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,743 DEBUG Processing 492/705 atomic regions from SNP 147366 to 147966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,806 DEBUG Processing 383/675 atomic regions from SNP 114748 to 115348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,842 DEBUG Processing 90/596 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,880 DEBUG Processing 205/662 atomic regions from SNP 61376 to 61976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,974 DEBUG Processing 493/705 atomic regions from SNP 147666 to 148266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,025 DEBUG Processing 384/675 atomic regions from SNP 115048 to 115648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,046 DEBUG Processing 91/596 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,097 DEBUG Processing 206/662 atomic regions from SNP 61676 to 62276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,194 DEBUG Processing 494/705 atomic regions from SNP 147966 to 148566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,248 DEBUG Processing 385/675 atomic regions from SNP 115348 to 115948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,256 DEBUG Processing 92/596 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,314 DEBUG Processing 207/662 atomic regions from SNP 61976 to 62576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,415 DEBUG Processing 495/705 atomic regions from SNP 148266 to 148866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,459 DEBUG Processing 93/596 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,469 DEBUG Processing 386/675 atomic regions from SNP 115648 to 116248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,531 DEBUG Processing 208/662 atomic regions from SNP 62276 to 62876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,666 DEBUG Processing 496/705 atomic regions from SNP 148566 to 149166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,670 DEBUG Processing 94/596 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,688 DEBUG Processing 387/675 atomic regions from SNP 115948 to 116548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,760 DEBUG Processing 209/662 atomic regions from SNP 62576 to 63176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,872 DEBUG Processing 95/596 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,910 DEBUG Processing 388/675 atomic regions from SNP 116248 to 116848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,921 DEBUG Processing 497/705 atomic regions from SNP 148866 to 149466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,981 DEBUG Processing 210/662 atomic regions from SNP 62876 to 63476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,070 DEBUG Processing 96/596 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,131 DEBUG Processing 389/675 atomic regions from SNP 116548 to 117148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,172 DEBUG Processing 498/705 atomic regions from SNP 149166 to 149766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,203 DEBUG Processing 211/662 atomic regions from SNP 63176 to 63776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,265 DEBUG Processing 97/596 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,356 DEBUG Processing 390/675 atomic regions from SNP 116848 to 117448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,419 DEBUG Processing 499/705 atomic regions from SNP 149466 to 150066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,431 DEBUG Processing 212/662 atomic regions from SNP 63476 to 64076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,461 DEBUG Processing 98/596 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,584 DEBUG Processing 391/675 atomic regions from SNP 117148 to 117748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,660 DEBUG Processing 99/596 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,660 DEBUG Processing 213/662 atomic regions from SNP 63776 to 64376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,678 DEBUG Processing 500/705 atomic regions from SNP 149766 to 150366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,808 DEBUG Processing 392/675 atomic regions from SNP 117448 to 118048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,857 DEBUG Processing 100/596 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,888 DEBUG Processing 214/662 atomic regions from SNP 64076 to 64676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,922 DEBUG Processing 501/705 atomic regions from SNP 150066 to 150666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,033 DEBUG Processing 393/675 atomic regions from SNP 117748 to 118348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,055 DEBUG Processing 101/596 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,117 DEBUG Processing 215/662 atomic regions from SNP 64376 to 64976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,155 DEBUG Processing 502/705 atomic regions from SNP 150366 to 150966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,251 DEBUG Processing 102/596 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,263 DEBUG Processing 394/675 atomic regions from SNP 118048 to 118648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,346 DEBUG Processing 216/662 atomic regions from SNP 64676 to 65276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,387 DEBUG Processing 503/705 atomic regions from SNP 150666 to 151266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,456 DEBUG Processing 103/596 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,514 DEBUG Processing 395/675 atomic regions from SNP 118348 to 118948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,583 DEBUG Processing 217/662 atomic regions from SNP 64976 to 65576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,626 DEBUG Processing 504/705 atomic regions from SNP 150966 to 151566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,661 DEBUG Processing 104/596 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,748 DEBUG Processing 396/675 atomic regions from SNP 118648 to 119248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,813 DEBUG Processing 218/662 atomic regions from SNP 65276 to 65876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,866 DEBUG Processing 105/596 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,867 DEBUG Processing 505/705 atomic regions from SNP 151266 to 151866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,975 DEBUG Processing 397/675 atomic regions from SNP 118948 to 119548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,046 DEBUG Processing 219/662 atomic regions from SNP 65576 to 66176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,094 DEBUG Processing 106/596 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,110 DEBUG Processing 506/705 atomic regions from SNP 151566 to 152166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,204 DEBUG Processing 398/675 atomic regions from SNP 119248 to 119848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,273 DEBUG Processing 220/662 atomic regions from SNP 65876 to 66476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,303 DEBUG Processing 107/596 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,335 DEBUG Processing 507/705 atomic regions from SNP 151866 to 152466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,439 DEBUG Processing 399/675 atomic regions from SNP 119548 to 120148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,506 DEBUG Processing 221/662 atomic regions from SNP 66176 to 66776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,518 DEBUG Processing 108/596 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,566 DEBUG Processing 508/705 atomic regions from SNP 152166 to 152766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,665 DEBUG Processing 400/675 atomic regions from SNP 119848 to 120448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,723 DEBUG Processing 109/596 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,725 DEBUG Processing 222/662 atomic regions from SNP 66476 to 67076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,793 DEBUG Processing 509/705 atomic regions from SNP 152466 to 153066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,929 DEBUG Processing 401/675 atomic regions from SNP 120148 to 120748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,938 DEBUG Processing 110/596 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,957 DEBUG Processing 223/662 atomic regions from SNP 66776 to 67376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,030 DEBUG Processing 510/705 atomic regions from SNP 152766 to 153366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,142 DEBUG Processing 111/596 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,189 DEBUG Processing 402/675 atomic regions from SNP 120448 to 121048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,189 DEBUG Processing 224/662 atomic regions from SNP 67076 to 67676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,268 DEBUG Processing 511/705 atomic regions from SNP 153066 to 153666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,348 DEBUG Processing 112/596 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,424 DEBUG Processing 225/662 atomic regions from SNP 67376 to 67976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,455 DEBUG Processing 403/675 atomic regions from SNP 120748 to 121348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,509 DEBUG Processing 512/705 atomic regions from SNP 153366 to 153966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,555 DEBUG Processing 113/596 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,668 DEBUG Processing 226/662 atomic regions from SNP 67676 to 68276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,727 DEBUG Processing 404/675 atomic regions from SNP 121048 to 121648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,750 DEBUG Processing 513/705 atomic regions from SNP 153666 to 154266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,761 DEBUG Processing 114/596 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,903 DEBUG Processing 227/662 atomic regions from SNP 67976 to 68576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,969 DEBUG Processing 115/596 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,990 DEBUG Processing 405/675 atomic regions from SNP 121348 to 121948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,995 DEBUG Processing 514/705 atomic regions from SNP 153966 to 154566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,138 DEBUG Processing 228/662 atomic regions from SNP 68276 to 68876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,179 DEBUG Processing 116/596 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,225 DEBUG Processing 515/705 atomic regions from SNP 154266 to 154866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,248 DEBUG Processing 406/675 atomic regions from SNP 121648 to 122248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,371 DEBUG Processing 229/662 atomic regions from SNP 68576 to 69176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,391 DEBUG Processing 117/596 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,461 DEBUG Processing 516/705 atomic regions from SNP 154566 to 155166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,502 DEBUG Processing 407/675 atomic regions from SNP 121948 to 122548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,606 DEBUG Processing 118/596 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,616 DEBUG Processing 230/662 atomic regions from SNP 68876 to 69476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,698 DEBUG Processing 517/705 atomic regions from SNP 154866 to 155466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,731 DEBUG Processing 408/675 atomic regions from SNP 122248 to 122848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,815 DEBUG Processing 119/596 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,842 DEBUG Processing 231/662 atomic regions from SNP 69176 to 69776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,927 DEBUG Processing 518/705 atomic regions from SNP 155166 to 155766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,962 DEBUG Processing 409/675 atomic regions from SNP 122548 to 123148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,025 DEBUG Processing 120/596 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,067 DEBUG Processing 232/662 atomic regions from SNP 69476 to 70076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,156 DEBUG Processing 519/705 atomic regions from SNP 155466 to 156066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,186 DEBUG Processing 410/675 atomic regions from SNP 122848 to 123448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,236 DEBUG Processing 121/596 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,295 DEBUG Processing 233/662 atomic regions from SNP 69776 to 70376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,408 DEBUG Processing 520/705 atomic regions from SNP 155766 to 156366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,422 DEBUG Processing 411/675 atomic regions from SNP 123148 to 123748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,455 DEBUG Processing 122/596 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,526 DEBUG Processing 234/662 atomic regions from SNP 70076 to 70676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,641 DEBUG Processing 521/705 atomic regions from SNP 156066 to 156666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,657 DEBUG Processing 412/675 atomic regions from SNP 123448 to 124048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,669 DEBUG Processing 123/596 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,766 DEBUG Processing 235/662 atomic regions from SNP 70376 to 70976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,883 DEBUG Processing 124/596 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,888 DEBUG Processing 522/705 atomic regions from SNP 156366 to 156966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,896 DEBUG Processing 413/675 atomic regions from SNP 123748 to 124348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,010 DEBUG Processing 236/662 atomic regions from SNP 70676 to 71276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,092 DEBUG Processing 125/596 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,133 DEBUG Processing 523/705 atomic regions from SNP 156666 to 157266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,134 DEBUG Processing 414/675 atomic regions from SNP 124048 to 124648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,245 DEBUG Processing 237/662 atomic regions from SNP 70976 to 71576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,298 DEBUG Processing 126/596 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,380 DEBUG Processing 524/705 atomic regions from SNP 156966 to 157566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,386 DEBUG Processing 415/675 atomic regions from SNP 124348 to 124948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,477 DEBUG Processing 238/662 atomic regions from SNP 71276 to 71876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,505 DEBUG Processing 127/596 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,624 DEBUG Processing 525/705 atomic regions from SNP 157266 to 157866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,639 DEBUG Processing 416/675 atomic regions from SNP 124648 to 125248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,710 DEBUG Processing 239/662 atomic regions from SNP 71576 to 72176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,715 DEBUG Processing 128/596 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,873 DEBUG Processing 526/705 atomic regions from SNP 157566 to 158166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,884 DEBUG Processing 417/675 atomic regions from SNP 124948 to 125548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,924 DEBUG Processing 129/596 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,942 DEBUG Processing 240/662 atomic regions from SNP 71876 to 72476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,125 DEBUG Processing 527/705 atomic regions from SNP 157866 to 158466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,127 DEBUG Processing 418/675 atomic regions from SNP 125248 to 125848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,160 DEBUG Processing 130/596 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,181 DEBUG Processing 241/662 atomic regions from SNP 72176 to 72776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,370 DEBUG Processing 419/675 atomic regions from SNP 125548 to 126148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,374 DEBUG Processing 528/705 atomic regions from SNP 158166 to 158766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,377 DEBUG Processing 131/596 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,423 DEBUG Processing 242/662 atomic regions from SNP 72476 to 73076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,600 DEBUG Processing 132/596 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,609 DEBUG Processing 420/675 atomic regions from SNP 125848 to 126448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,620 DEBUG Processing 529/705 atomic regions from SNP 158466 to 159066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,662 DEBUG Processing 243/662 atomic regions from SNP 72776 to 73376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,813 DEBUG Processing 133/596 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,853 DEBUG Processing 421/675 atomic regions from SNP 126148 to 126748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,868 DEBUG Processing 530/705 atomic regions from SNP 158766 to 159366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,902 DEBUG Processing 244/662 atomic regions from SNP 73076 to 73676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,027 DEBUG Processing 134/596 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,094 DEBUG Processing 422/675 atomic regions from SNP 126448 to 127048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,113 DEBUG Processing 531/705 atomic regions from SNP 159066 to 159666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,142 DEBUG Processing 245/662 atomic regions from SNP 73376 to 73976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,240 DEBUG Processing 135/596 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,335 DEBUG Processing 423/675 atomic regions from SNP 126748 to 127348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,353 DEBUG Processing 532/705 atomic regions from SNP 159366 to 159966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,380 DEBUG Processing 246/662 atomic regions from SNP 73676 to 74276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,453 DEBUG Processing 136/596 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,579 DEBUG Processing 424/675 atomic regions from SNP 127048 to 127648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,595 DEBUG Processing 533/705 atomic regions from SNP 159666 to 160266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,622 DEBUG Processing 247/662 atomic regions from SNP 73976 to 74576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,668 DEBUG Processing 137/596 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,825 DEBUG Processing 425/675 atomic regions from SNP 127348 to 127948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,837 DEBUG Processing 534/705 atomic regions from SNP 159966 to 160566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,867 DEBUG Processing 248/662 atomic regions from SNP 74276 to 74876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,906 DEBUG Processing 138/596 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,087 DEBUG Processing 535/705 atomic regions from SNP 160266 to 160866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,094 DEBUG Processing 426/675 atomic regions from SNP 127648 to 128248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,115 DEBUG Processing 249/662 atomic regions from SNP 74576 to 75176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,130 DEBUG Processing 139/596 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,346 DEBUG Processing 427/675 atomic regions from SNP 127948 to 128548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,355 DEBUG Processing 140/596 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,358 DEBUG Processing 536/705 atomic regions from SNP 160566 to 161166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,366 DEBUG Processing 250/662 atomic regions from SNP 74876 to 75476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,597 DEBUG Processing 428/675 atomic regions from SNP 128248 to 128848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,604 DEBUG Processing 141/596 atomic regions from SNP 42140 to 42741 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,618 DEBUG Processing 251/662 atomic regions from SNP 75176 to 75776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,635 DEBUG Processing 537/705 atomic regions from SNP 160866 to 161466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,847 DEBUG Processing 142/596 atomic regions from SNP 42441 to 43042 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,866 DEBUG Processing 252/662 atomic regions from SNP 75476 to 76076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,867 DEBUG Processing 429/675 atomic regions from SNP 128548 to 129148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,905 DEBUG Processing 538/705 atomic regions from SNP 161166 to 161766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,067 DEBUG Processing 143/596 atomic regions from SNP 42742 to 43343 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,113 DEBUG Processing 253/662 atomic regions from SNP 75776 to 76376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,135 DEBUG Processing 430/675 atomic regions from SNP 128848 to 129448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,167 DEBUG Processing 539/705 atomic regions from SNP 161466 to 162066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,285 DEBUG Processing 144/596 atomic regions from SNP 43043 to 43644 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,355 DEBUG Processing 254/662 atomic regions from SNP 76076 to 76676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,390 DEBUG Processing 431/675 atomic regions from SNP 129148 to 129748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,413 DEBUG Processing 540/705 atomic regions from SNP 161766 to 162366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,506 DEBUG Processing 145/596 atomic regions from SNP 43344 to 43945 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,598 DEBUG Processing 255/662 atomic regions from SNP 76376 to 76976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,639 DEBUG Processing 432/675 atomic regions from SNP 129448 to 130048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,686 DEBUG Processing 541/705 atomic regions from SNP 162066 to 162666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,725 DEBUG Processing 146/596 atomic regions from SNP 43645 to 44246 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,839 DEBUG Processing 256/662 atomic regions from SNP 76676 to 77276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,889 DEBUG Processing 433/675 atomic regions from SNP 129748 to 130348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,951 DEBUG Processing 147/596 atomic regions from SNP 43946 to 44547 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,953 DEBUG Processing 542/705 atomic regions from SNP 162366 to 162966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,075 DEBUG Processing 257/662 atomic regions from SNP 76976 to 77576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,137 DEBUG Processing 434/675 atomic regions from SNP 130048 to 130648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,171 DEBUG Processing 148/596 atomic regions from SNP 44247 to 44848 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,224 DEBUG Processing 543/705 atomic regions from SNP 162666 to 163266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,314 DEBUG Processing 258/662 atomic regions from SNP 77276 to 77876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,389 DEBUG Processing 435/675 atomic regions from SNP 130348 to 130948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,392 DEBUG Processing 149/596 atomic regions from SNP 44548 to 45149 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,489 DEBUG Processing 544/705 atomic regions from SNP 162966 to 163566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,554 DEBUG Processing 259/662 atomic regions from SNP 77576 to 78176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,610 DEBUG Processing 150/596 atomic regions from SNP 44849 to 45450 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,627 DEBUG Processing 436/675 atomic regions from SNP 130648 to 131248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,745 DEBUG Processing 545/705 atomic regions from SNP 163266 to 163866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,816 DEBUG Processing 260/662 atomic regions from SNP 77876 to 78476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,830 DEBUG Processing 151/596 atomic regions from SNP 45150 to 45751 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,871 DEBUG Processing 437/675 atomic regions from SNP 130948 to 131548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,000 DEBUG Processing 546/705 atomic regions from SNP 163566 to 164166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,051 DEBUG Processing 152/596 atomic regions from SNP 45451 to 46052 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,080 DEBUG Processing 261/662 atomic regions from SNP 78176 to 78776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,110 DEBUG Processing 438/675 atomic regions from SNP 131248 to 131848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,248 DEBUG Processing 547/705 atomic regions from SNP 163866 to 164466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,267 DEBUG Processing 153/596 atomic regions from SNP 45752 to 46353 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,335 DEBUG Processing 262/662 atomic regions from SNP 78476 to 79076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,348 DEBUG Processing 439/675 atomic regions from SNP 131548 to 132148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,485 DEBUG Processing 154/596 atomic regions from SNP 46053 to 46654 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,498 DEBUG Processing 548/705 atomic regions from SNP 164166 to 164766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,571 DEBUG Processing 263/662 atomic regions from SNP 78776 to 79376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,598 DEBUG Processing 440/675 atomic regions from SNP 131848 to 132448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,704 DEBUG Processing 155/596 atomic regions from SNP 46354 to 46955 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,744 DEBUG Processing 549/705 atomic regions from SNP 164466 to 165066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,803 DEBUG Processing 264/662 atomic regions from SNP 79076 to 79676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,836 DEBUG Processing 441/675 atomic regions from SNP 132148 to 132748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,919 DEBUG Processing 156/596 atomic regions from SNP 46655 to 47256 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,981 DEBUG Processing 550/705 atomic regions from SNP 164766 to 165366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,034 DEBUG Processing 265/662 atomic regions from SNP 79376 to 79976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,074 DEBUG Processing 442/675 atomic regions from SNP 132448 to 133048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,135 DEBUG Processing 157/596 atomic regions from SNP 46956 to 47557 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,213 DEBUG Processing 551/705 atomic regions from SNP 165066 to 165666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,285 DEBUG Processing 266/662 atomic regions from SNP 79676 to 80276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,314 DEBUG Processing 443/675 atomic regions from SNP 132748 to 133348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,350 DEBUG Processing 158/596 atomic regions from SNP 47257 to 47858 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,460 DEBUG Processing 552/705 atomic regions from SNP 165366 to 165966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,518 DEBUG Processing 267/662 atomic regions from SNP 79976 to 80576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,551 DEBUG Processing 444/675 atomic regions from SNP 133048 to 133648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,568 DEBUG Processing 159/596 atomic regions from SNP 47558 to 48159 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,722 DEBUG Processing 553/705 atomic regions from SNP 165666 to 166266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,755 DEBUG Processing 268/662 atomic regions from SNP 80276 to 80876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,782 DEBUG Processing 160/596 atomic regions from SNP 47859 to 48460 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,808 DEBUG Processing 445/675 atomic regions from SNP 133348 to 133948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,996 DEBUG Processing 554/705 atomic regions from SNP 165966 to 166566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,000 DEBUG Processing 161/596 atomic regions from SNP 48160 to 48761 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,001 DEBUG Processing 269/662 atomic regions from SNP 80576 to 81176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,046 DEBUG Processing 446/675 atomic regions from SNP 133648 to 134248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,214 DEBUG Processing 162/596 atomic regions from SNP 48461 to 49062 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,237 DEBUG Processing 270/662 atomic regions from SNP 80876 to 81476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,255 DEBUG Processing 555/705 atomic regions from SNP 166266 to 166866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,278 DEBUG Processing 447/675 atomic regions from SNP 133948 to 134548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,425 DEBUG Processing 163/596 atomic regions from SNP 48762 to 49363 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,469 DEBUG Processing 271/662 atomic regions from SNP 81176 to 81776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,508 DEBUG Processing 448/675 atomic regions from SNP 134248 to 134848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,524 DEBUG Processing 556/705 atomic regions from SNP 166566 to 167166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,641 DEBUG Processing 164/596 atomic regions from SNP 49063 to 49664 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,704 DEBUG Processing 272/662 atomic regions from SNP 81476 to 82076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,762 DEBUG Processing 449/675 atomic regions from SNP 134548 to 135148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,793 DEBUG Processing 557/705 atomic regions from SNP 166866 to 167466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,877 DEBUG Processing 165/596 atomic regions from SNP 49364 to 49965 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,933 DEBUG Processing 273/662 atomic regions from SNP 81776 to 82376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,018 DEBUG Processing 450/675 atomic regions from SNP 134848 to 135448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,061 DEBUG Processing 558/705 atomic regions from SNP 167166 to 167766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,104 DEBUG Processing 166/596 atomic regions from SNP 49665 to 50266 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,163 DEBUG Processing 274/662 atomic regions from SNP 82076 to 82676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,255 DEBUG Processing 451/675 atomic regions from SNP 135148 to 135748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,322 DEBUG Processing 167/596 atomic regions from SNP 49966 to 50567 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,334 DEBUG Processing 559/705 atomic regions from SNP 167466 to 168066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,399 DEBUG Processing 275/662 atomic regions from SNP 82376 to 82976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,487 DEBUG Processing 452/675 atomic regions from SNP 135448 to 136048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,535 DEBUG Processing 168/596 atomic regions from SNP 50267 to 50868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,600 DEBUG Processing 560/705 atomic regions from SNP 167766 to 168366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,656 DEBUG Processing 276/662 atomic regions from SNP 82676 to 83276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,715 DEBUG Processing 453/675 atomic regions from SNP 135748 to 136348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,743 DEBUG Processing 169/596 atomic regions from SNP 50568 to 51169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,852 DEBUG Processing 561/705 atomic regions from SNP 168066 to 168666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,889 DEBUG Processing 277/662 atomic regions from SNP 82976 to 83576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,949 DEBUG Processing 454/675 atomic regions from SNP 136048 to 136648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,951 DEBUG Processing 170/596 atomic regions from SNP 50869 to 51470 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,111 DEBUG Processing 562/705 atomic regions from SNP 168366 to 168966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,126 DEBUG Processing 278/662 atomic regions from SNP 83276 to 83876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,166 DEBUG Processing 171/596 atomic regions from SNP 51170 to 51771 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,184 DEBUG Processing 455/675 atomic regions from SNP 136348 to 136948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,374 DEBUG Processing 563/705 atomic regions from SNP 168666 to 169266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,377 DEBUG Processing 279/662 atomic regions from SNP 83576 to 84176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,385 DEBUG Processing 172/596 atomic regions from SNP 51471 to 52072 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,441 DEBUG Processing 456/675 atomic regions from SNP 136648 to 137248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,603 DEBUG Processing 173/596 atomic regions from SNP 51772 to 52373 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,633 DEBUG Processing 280/662 atomic regions from SNP 83876 to 84476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,642 DEBUG Processing 564/705 atomic regions from SNP 168966 to 169566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,679 DEBUG Processing 457/675 atomic regions from SNP 136948 to 137548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,821 DEBUG Processing 174/596 atomic regions from SNP 52073 to 52674 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,890 DEBUG Processing 281/662 atomic regions from SNP 84176 to 84776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,906 DEBUG Processing 565/705 atomic regions from SNP 169266 to 169866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,915 DEBUG Processing 458/675 atomic regions from SNP 137248 to 137848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,041 DEBUG Processing 175/596 atomic regions from SNP 52374 to 52975 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,149 DEBUG Processing 282/662 atomic regions from SNP 84476 to 85076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,153 DEBUG Processing 459/675 atomic regions from SNP 137548 to 138148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,169 DEBUG Processing 566/705 atomic regions from SNP 169566 to 170166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,260 DEBUG Processing 176/596 atomic regions from SNP 52675 to 53276 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,385 DEBUG Processing 460/675 atomic regions from SNP 137848 to 138448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,406 DEBUG Processing 283/662 atomic regions from SNP 84776 to 85376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,414 DEBUG Processing 567/705 atomic regions from SNP 169866 to 170466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,421 DEBUG Segmenting atomic regions: 2025-01-31 09:57:35,478 DEBUG Processing 177/596 atomic regions from SNP 52976 to 53577 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,497 DEBUG Processing 1/561 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,628 DEBUG Processing 461/675 atomic regions from SNP 138148 to 138748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,642 DEBUG Processing 284/662 atomic regions from SNP 85076 to 85676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,646 DEBUG Processing 568/705 atomic regions from SNP 170166 to 170766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,694 DEBUG Processing 178/596 atomic regions from SNP 53277 to 53878 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,712 DEBUG Processing 2/561 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,877 DEBUG Processing 285/662 atomic regions from SNP 85376 to 85976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,882 DEBUG Processing 569/705 atomic regions from SNP 170466 to 171066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,890 DEBUG Processing 462/675 atomic regions from SNP 138448 to 139048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,914 DEBUG Processing 179/596 atomic regions from SNP 53578 to 54179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,940 DEBUG Processing 3/561 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,118 DEBUG Processing 286/662 atomic regions from SNP 85676 to 86276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,123 DEBUG Processing 570/705 atomic regions from SNP 170766 to 171366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,138 DEBUG Processing 463/675 atomic regions from SNP 138748 to 139348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,139 DEBUG Processing 180/596 atomic regions from SNP 53879 to 54480 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,185 DEBUG Processing 4/561 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,365 DEBUG Processing 287/662 atomic regions from SNP 85976 to 86576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,373 DEBUG Processing 571/705 atomic regions from SNP 171066 to 171666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,380 DEBUG Processing 181/596 atomic regions from SNP 54180 to 54781 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,386 DEBUG Processing 464/675 atomic regions from SNP 139048 to 139648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,427 DEBUG Processing 5/561 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,609 DEBUG Processing 288/662 atomic regions from SNP 86276 to 86876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,617 DEBUG Processing 572/705 atomic regions from SNP 171366 to 171966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,631 DEBUG Processing 465/675 atomic regions from SNP 139348 to 139948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,635 DEBUG Processing 182/596 atomic regions from SNP 54481 to 55082 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,663 DEBUG Processing 6/561 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,856 DEBUG Processing 289/662 atomic regions from SNP 86576 to 87176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,871 DEBUG Processing 573/705 atomic regions from SNP 171666 to 172266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,877 DEBUG Processing 183/596 atomic regions from SNP 54782 to 55383 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,879 DEBUG Processing 466/675 atomic regions from SNP 139648 to 140248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,914 DEBUG Processing 7/561 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,089 DEBUG Processing 184/596 atomic regions from SNP 55083 to 55684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,090 DEBUG Processing 290/662 atomic regions from SNP 86876 to 87476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,118 DEBUG Processing 467/675 atomic regions from SNP 139948 to 140548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,131 DEBUG Processing 574/705 atomic regions from SNP 171966 to 172566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,161 DEBUG Processing 8/561 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,301 DEBUG Processing 185/596 atomic regions from SNP 55384 to 55985 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,318 DEBUG Processing 291/662 atomic regions from SNP 87176 to 87776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,355 DEBUG Processing 468/675 atomic regions from SNP 140248 to 140848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,391 DEBUG Processing 575/705 atomic regions from SNP 172266 to 172866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,414 DEBUG Processing 9/561 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,526 DEBUG Processing 186/596 atomic regions from SNP 55685 to 56286 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,539 DEBUG Processing 292/662 atomic regions from SNP 87476 to 88076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,585 DEBUG Processing 469/675 atomic regions from SNP 140548 to 141148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,653 DEBUG Processing 10/561 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,662 DEBUG Processing 576/705 atomic regions from SNP 172566 to 173166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,753 DEBUG Processing 187/596 atomic regions from SNP 55986 to 56587 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,764 DEBUG Processing 293/662 atomic regions from SNP 87776 to 88376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,820 DEBUG Processing 470/675 atomic regions from SNP 140848 to 141448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,895 DEBUG Processing 11/561 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,922 DEBUG Processing 577/705 atomic regions from SNP 172866 to 173466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,965 DEBUG Processing 188/596 atomic regions from SNP 56287 to 56888 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,998 DEBUG Processing 294/662 atomic regions from SNP 88076 to 88676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,053 DEBUG Processing 471/675 atomic regions from SNP 141148 to 141748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,137 DEBUG Processing 12/561 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,179 DEBUG Processing 189/596 atomic regions from SNP 56588 to 57189 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,180 DEBUG Processing 578/705 atomic regions from SNP 173166 to 173766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,229 DEBUG Processing 295/662 atomic regions from SNP 88376 to 88976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,289 DEBUG Processing 472/675 atomic regions from SNP 141448 to 142048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,362 DEBUG Processing 13/561 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,396 DEBUG Processing 190/596 atomic regions from SNP 56889 to 57490 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,447 DEBUG Processing 579/705 atomic regions from SNP 173466 to 174066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,462 DEBUG Processing 296/662 atomic regions from SNP 88676 to 89276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,522 DEBUG Processing 473/675 atomic regions from SNP 141748 to 142348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,573 DEBUG Processing 14/561 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,620 DEBUG Processing 191/596 atomic regions from SNP 57190 to 57791 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,700 DEBUG Processing 297/662 atomic regions from SNP 88976 to 89576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,717 DEBUG Processing 580/705 atomic regions from SNP 173766 to 174366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,766 DEBUG Processing 474/675 atomic regions from SNP 142048 to 142648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,786 DEBUG Processing 15/561 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,862 DEBUG Processing 192/596 atomic regions from SNP 57491 to 58092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,934 DEBUG Processing 298/662 atomic regions from SNP 89276 to 89876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,981 DEBUG Processing 581/705 atomic regions from SNP 174066 to 174666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,995 DEBUG Processing 16/561 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,002 DEBUG Processing 475/675 atomic regions from SNP 142348 to 142948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,106 DEBUG Processing 193/596 atomic regions from SNP 57792 to 58393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,169 DEBUG Processing 299/662 atomic regions from SNP 89576 to 90176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,216 DEBUG Processing 17/561 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,249 DEBUG Processing 476/675 atomic regions from SNP 142648 to 143248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,252 DEBUG Processing 582/705 atomic regions from SNP 174366 to 174966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,359 DEBUG Processing 194/596 atomic regions from SNP 58093 to 58693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,400 DEBUG Processing 300/662 atomic regions from SNP 89876 to 90476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,438 DEBUG Processing 18/561 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,495 DEBUG Processing 477/675 atomic regions from SNP 142948 to 143548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,504 DEBUG Processing 583/705 atomic regions from SNP 174666 to 175266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,609 DEBUG Processing 195/596 atomic regions from SNP 58393 to 58993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,629 DEBUG Processing 301/662 atomic regions from SNP 90176 to 90776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,653 DEBUG Processing 19/561 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,751 DEBUG Processing 478/675 atomic regions from SNP 143248 to 143848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,762 DEBUG Processing 584/705 atomic regions from SNP 174966 to 175566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,851 DEBUG Processing 196/596 atomic regions from SNP 58693 to 59293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,857 DEBUG Processing 302/662 atomic regions from SNP 90476 to 91076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,870 DEBUG Processing 20/561 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,002 DEBUG Processing 479/675 atomic regions from SNP 143548 to 144148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,039 DEBUG Processing 585/705 atomic regions from SNP 175266 to 175866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,088 DEBUG Processing 21/561 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,088 DEBUG Processing 197/596 atomic regions from SNP 58993 to 59593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,103 DEBUG Processing 303/662 atomic regions from SNP 90776 to 91376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,243 DEBUG Processing 480/675 atomic regions from SNP 143848 to 144448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,307 DEBUG Processing 198/596 atomic regions from SNP 59293 to 59893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,309 DEBUG Processing 586/705 atomic regions from SNP 175566 to 176166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,311 DEBUG Processing 22/561 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,376 DEBUG Processing 304/662 atomic regions from SNP 91076 to 91676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,484 DEBUG Processing 481/675 atomic regions from SNP 144148 to 144748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,521 DEBUG Processing 199/596 atomic regions from SNP 59593 to 60193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,523 DEBUG Processing 23/561 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,581 DEBUG Processing 587/705 atomic regions from SNP 175866 to 176466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,612 DEBUG Processing 305/662 atomic regions from SNP 91376 to 91976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,731 DEBUG Processing 482/675 atomic regions from SNP 144448 to 145048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,741 DEBUG Processing 200/596 atomic regions from SNP 59893 to 60493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,741 DEBUG Processing 24/561 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,831 DEBUG Processing 588/705 atomic regions from SNP 176166 to 176766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,846 DEBUG Processing 306/662 atomic regions from SNP 91676 to 92276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,953 DEBUG Processing 25/561 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,959 DEBUG Processing 201/596 atomic regions from SNP 60193 to 60793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,972 DEBUG Processing 483/675 atomic regions from SNP 144748 to 145348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,074 DEBUG Processing 589/705 atomic regions from SNP 176466 to 177066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,078 DEBUG Processing 307/662 atomic regions from SNP 91976 to 92576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,167 DEBUG Processing 26/561 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,177 DEBUG Processing 202/596 atomic regions from SNP 60493 to 61093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,216 DEBUG Processing 484/675 atomic regions from SNP 145048 to 145648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,311 DEBUG Processing 308/662 atomic regions from SNP 92276 to 92876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,320 DEBUG Processing 590/705 atomic regions from SNP 176766 to 177366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,379 DEBUG Processing 27/561 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,409 DEBUG Processing 203/596 atomic regions from SNP 60793 to 61393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,454 DEBUG Processing 485/675 atomic regions from SNP 145348 to 145948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,541 DEBUG Processing 309/662 atomic regions from SNP 92576 to 93176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,584 DEBUG Processing 591/705 atomic regions from SNP 177066 to 177666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,588 DEBUG Processing 28/561 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,643 DEBUG Processing 204/596 atomic regions from SNP 61093 to 61693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,690 DEBUG Processing 486/675 atomic regions from SNP 145648 to 146248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,772 DEBUG Processing 310/662 atomic regions from SNP 92876 to 93476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,794 DEBUG Processing 29/561 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,848 DEBUG Processing 592/705 atomic regions from SNP 177366 to 177966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,882 DEBUG Processing 205/596 atomic regions from SNP 61393 to 61993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,926 DEBUG Processing 487/675 atomic regions from SNP 145948 to 146548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,002 DEBUG Processing 311/662 atomic regions from SNP 93176 to 93776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,008 DEBUG Processing 30/561 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,100 DEBUG Processing 593/705 atomic regions from SNP 177666 to 178266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,129 DEBUG Processing 206/596 atomic regions from SNP 61693 to 62293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,162 DEBUG Processing 488/675 atomic regions from SNP 146248 to 146848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,217 DEBUG Processing 31/561 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,232 DEBUG Processing 312/662 atomic regions from SNP 93476 to 94076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,333 DEBUG Processing 594/705 atomic regions from SNP 177966 to 178566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,360 DEBUG Processing 207/596 atomic regions from SNP 61993 to 62593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,402 DEBUG Processing 489/675 atomic regions from SNP 146548 to 147148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,456 DEBUG Processing 32/561 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,462 DEBUG Processing 313/662 atomic regions from SNP 93776 to 94376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,570 DEBUG Processing 595/705 atomic regions from SNP 178266 to 178866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,577 DEBUG Processing 208/596 atomic regions from SNP 62293 to 62893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,661 DEBUG Processing 490/675 atomic regions from SNP 146848 to 147448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,693 DEBUG Processing 314/662 atomic regions from SNP 94076 to 94676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,696 DEBUG Processing 33/561 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,796 DEBUG Processing 209/596 atomic regions from SNP 62593 to 63193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,800 DEBUG Processing 596/705 atomic regions from SNP 178566 to 179166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,901 DEBUG Processing 491/675 atomic regions from SNP 147148 to 147748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,927 DEBUG Processing 315/662 atomic regions from SNP 94376 to 94976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,928 DEBUG Processing 34/561 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,013 DEBUG Processing 210/596 atomic regions from SNP 62893 to 63493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,037 DEBUG Processing 597/705 atomic regions from SNP 178866 to 179466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,138 DEBUG Processing 35/561 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,140 DEBUG Processing 492/675 atomic regions from SNP 147448 to 148048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,161 DEBUG Processing 316/662 atomic regions from SNP 94676 to 95276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,225 DEBUG Processing 211/596 atomic regions from SNP 63193 to 63793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,282 DEBUG Processing 598/705 atomic regions from SNP 179166 to 179766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,344 DEBUG Processing 36/561 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,380 DEBUG Processing 493/675 atomic regions from SNP 147748 to 148348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,397 DEBUG Processing 317/662 atomic regions from SNP 94976 to 95576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,452 DEBUG Processing 212/596 atomic regions from SNP 63493 to 64093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,522 DEBUG Processing 599/705 atomic regions from SNP 179466 to 180066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,552 DEBUG Processing 37/561 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,623 DEBUG Processing 494/675 atomic regions from SNP 148048 to 148648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,632 DEBUG Processing 318/662 atomic regions from SNP 95276 to 95876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,671 DEBUG Processing 213/596 atomic regions from SNP 63793 to 64393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,757 DEBUG Processing 38/561 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,758 DEBUG Processing 600/705 atomic regions from SNP 179766 to 180366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,857 DEBUG Processing 495/675 atomic regions from SNP 148348 to 148948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,867 DEBUG Processing 319/662 atomic regions from SNP 95576 to 96176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,885 DEBUG Processing 214/596 atomic regions from SNP 64093 to 64693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,963 DEBUG Processing 39/561 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,989 DEBUG Processing 601/705 atomic regions from SNP 180066 to 180666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,096 DEBUG Processing 496/675 atomic regions from SNP 148648 to 149248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,101 DEBUG Processing 320/662 atomic regions from SNP 95876 to 96476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,102 DEBUG Processing 215/596 atomic regions from SNP 64393 to 64993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,176 DEBUG Processing 40/561 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,223 DEBUG Processing 602/705 atomic regions from SNP 180366 to 180966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,325 DEBUG Processing 216/596 atomic regions from SNP 64693 to 65293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,339 DEBUG Processing 497/675 atomic regions from SNP 148948 to 149548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,340 DEBUG Processing 321/662 atomic regions from SNP 96176 to 96776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,395 DEBUG Processing 41/561 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,463 DEBUG Processing 603/705 atomic regions from SNP 180666 to 181266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,547 DEBUG Processing 217/596 atomic regions from SNP 64993 to 65593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,590 DEBUG Processing 322/662 atomic regions from SNP 96476 to 97076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,592 DEBUG Processing 498/675 atomic regions from SNP 149248 to 149848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,624 DEBUG Processing 42/561 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,738 DEBUG Processing 604/705 atomic regions from SNP 180966 to 181566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,770 DEBUG Processing 218/596 atomic regions from SNP 65293 to 65893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,831 DEBUG Processing 323/662 atomic regions from SNP 96776 to 97376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,834 DEBUG Processing 499/675 atomic regions from SNP 149548 to 150148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,842 DEBUG Processing 43/561 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,985 DEBUG Processing 605/705 atomic regions from SNP 181266 to 181866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,988 DEBUG Processing 219/596 atomic regions from SNP 65593 to 66193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,070 DEBUG Processing 324/662 atomic regions from SNP 97076 to 97676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,076 DEBUG Processing 500/675 atomic regions from SNP 149848 to 150448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,081 DEBUG Processing 44/561 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,202 DEBUG Processing 220/596 atomic regions from SNP 65893 to 66493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,222 DEBUG Processing 606/705 atomic regions from SNP 181566 to 182166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,309 DEBUG Processing 325/662 atomic regions from SNP 97376 to 97976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,318 DEBUG Processing 501/675 atomic regions from SNP 150148 to 150748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,324 DEBUG Processing 45/561 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,417 DEBUG Processing 221/596 atomic regions from SNP 66193 to 66793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,448 DEBUG Processing 607/705 atomic regions from SNP 181866 to 182466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,546 DEBUG Processing 326/662 atomic regions from SNP 97676 to 98276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,567 DEBUG Processing 46/561 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,571 DEBUG Processing 502/675 atomic regions from SNP 150448 to 151048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,634 DEBUG Processing 222/596 atomic regions from SNP 66493 to 67093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,677 DEBUG Processing 608/705 atomic regions from SNP 182166 to 182766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,782 DEBUG Processing 327/662 atomic regions from SNP 97976 to 98576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,811 DEBUG Processing 47/561 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,829 DEBUG Processing 503/675 atomic regions from SNP 150748 to 151348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,850 DEBUG Processing 223/596 atomic regions from SNP 66793 to 67393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,932 DEBUG Processing 609/705 atomic regions from SNP 182466 to 183066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,020 DEBUG Processing 328/662 atomic regions from SNP 98276 to 98876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,059 DEBUG Processing 48/561 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,068 DEBUG Processing 224/596 atomic regions from SNP 67093 to 67693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,073 DEBUG Processing 504/675 atomic regions from SNP 151048 to 151648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,191 DEBUG Processing 610/705 atomic regions from SNP 182766 to 183366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,258 DEBUG Processing 329/662 atomic regions from SNP 98576 to 99176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,287 DEBUG Processing 225/596 atomic regions from SNP 67393 to 67993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,298 DEBUG Processing 49/561 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,323 DEBUG Processing 505/675 atomic regions from SNP 151348 to 151948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,450 DEBUG Processing 611/705 atomic regions from SNP 183066 to 183666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,497 DEBUG Processing 330/662 atomic regions from SNP 98876 to 99476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,505 DEBUG Processing 226/596 atomic regions from SNP 67693 to 68293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,538 DEBUG Processing 50/561 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,568 DEBUG Processing 506/675 atomic regions from SNP 151648 to 152248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,711 DEBUG Processing 612/705 atomic regions from SNP 183366 to 183966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,729 DEBUG Processing 227/596 atomic regions from SNP 67993 to 68593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,733 DEBUG Processing 331/662 atomic regions from SNP 99176 to 99776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,764 DEBUG Processing 51/561 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,793 DEBUG Processing 507/675 atomic regions from SNP 151948 to 152548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,951 DEBUG Processing 228/596 atomic regions from SNP 68293 to 68893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,962 DEBUG Processing 613/705 atomic regions from SNP 183666 to 184266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,971 DEBUG Processing 332/662 atomic regions from SNP 99476 to 100076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,001 DEBUG Processing 52/561 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,025 DEBUG Processing 508/675 atomic regions from SNP 152248 to 152848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,178 DEBUG Processing 229/596 atomic regions from SNP 68593 to 69193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,205 DEBUG Processing 614/705 atomic regions from SNP 183966 to 184566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,207 DEBUG Processing 333/662 atomic regions from SNP 99776 to 100376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,220 DEBUG Processing 53/561 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,258 DEBUG Processing 509/675 atomic regions from SNP 152548 to 153148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,398 DEBUG Processing 230/596 atomic regions from SNP 68893 to 69493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,437 DEBUG Processing 54/561 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,442 DEBUG Processing 334/662 atomic regions from SNP 100076 to 100676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,462 DEBUG Processing 615/705 atomic regions from SNP 184266 to 184866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,490 DEBUG Processing 510/675 atomic regions from SNP 152848 to 153448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,618 DEBUG Processing 231/596 atomic regions from SNP 69193 to 69793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,654 DEBUG Processing 55/561 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,681 DEBUG Processing 335/662 atomic regions from SNP 100376 to 100976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,717 DEBUG Processing 616/705 atomic regions from SNP 184566 to 185166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,745 DEBUG Processing 511/675 atomic regions from SNP 153148 to 153748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,836 DEBUG Processing 232/596 atomic regions from SNP 69493 to 70093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,870 DEBUG Processing 56/561 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,920 DEBUG Processing 336/662 atomic regions from SNP 100676 to 101276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,954 DEBUG Processing 617/705 atomic regions from SNP 184866 to 185466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,996 DEBUG Processing 512/675 atomic regions from SNP 153448 to 154048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,051 DEBUG Processing 233/596 atomic regions from SNP 69793 to 70393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,086 DEBUG Processing 57/561 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,171 DEBUG Processing 337/662 atomic regions from SNP 100976 to 101576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,212 DEBUG Processing 618/705 atomic regions from SNP 185166 to 185766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,258 DEBUG Processing 513/675 atomic regions from SNP 153748 to 154348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,270 DEBUG Processing 234/596 atomic regions from SNP 70093 to 70693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,300 DEBUG Processing 58/561 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,408 DEBUG Processing 338/662 atomic regions from SNP 101276 to 101876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,451 DEBUG Processing 619/705 atomic regions from SNP 185466 to 186066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,492 DEBUG Processing 235/596 atomic regions from SNP 70393 to 70993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,511 DEBUG Processing 514/675 atomic regions from SNP 154048 to 154648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,520 DEBUG Processing 59/561 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,644 DEBUG Processing 339/662 atomic regions from SNP 101576 to 102176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,684 DEBUG Processing 620/705 atomic regions from SNP 185766 to 186366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,718 DEBUG Processing 236/596 atomic regions from SNP 70693 to 71293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,746 DEBUG Processing 515/675 atomic regions from SNP 154348 to 154948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,751 DEBUG Processing 60/561 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,874 DEBUG Processing 340/662 atomic regions from SNP 101876 to 102476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,914 DEBUG Processing 621/705 atomic regions from SNP 186066 to 186666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,932 DEBUG Processing 237/596 atomic regions from SNP 70993 to 71593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,978 DEBUG Processing 516/675 atomic regions from SNP 154648 to 155248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,978 DEBUG Processing 61/561 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,097 DEBUG Processing 341/662 atomic regions from SNP 102176 to 102776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,140 DEBUG Processing 622/705 atomic regions from SNP 186366 to 186966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,145 DEBUG Processing 238/596 atomic regions from SNP 71293 to 71893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,216 DEBUG Processing 62/561 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,228 DEBUG Processing 517/675 atomic regions from SNP 154948 to 155548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,325 DEBUG Processing 342/662 atomic regions from SNP 102476 to 103076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,354 DEBUG Processing 239/596 atomic regions from SNP 71593 to 72193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,385 DEBUG Processing 623/705 atomic regions from SNP 186666 to 187266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,455 DEBUG Processing 63/561 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,483 DEBUG Processing 518/675 atomic regions from SNP 155248 to 155848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,560 DEBUG Processing 343/662 atomic regions from SNP 102776 to 103376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,586 DEBUG Processing 240/596 atomic regions from SNP 71893 to 72493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,620 DEBUG Processing 624/705 atomic regions from SNP 186966 to 187566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,696 DEBUG Processing 64/561 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,718 DEBUG Processing 519/675 atomic regions from SNP 155548 to 156148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,794 DEBUG Processing 344/662 atomic regions from SNP 103076 to 103676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,806 DEBUG Processing 241/596 atomic regions from SNP 72193 to 72793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,859 DEBUG Processing 625/705 atomic regions from SNP 187266 to 187866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,932 DEBUG Processing 65/561 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,954 DEBUG Processing 520/675 atomic regions from SNP 155848 to 156448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,025 DEBUG Processing 242/596 atomic regions from SNP 72493 to 73093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,033 DEBUG Processing 345/662 atomic regions from SNP 103376 to 103976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,097 DEBUG Processing 626/705 atomic regions from SNP 187566 to 188166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,166 DEBUG Processing 66/561 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,187 DEBUG Processing 521/675 atomic regions from SNP 156148 to 156748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,241 DEBUG Processing 243/596 atomic regions from SNP 72793 to 73393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,266 DEBUG Processing 346/662 atomic regions from SNP 103676 to 104276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,333 DEBUG Processing 627/705 atomic regions from SNP 187866 to 188466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,408 DEBUG Processing 67/561 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,420 DEBUG Processing 522/675 atomic regions from SNP 156448 to 157048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,462 DEBUG Processing 244/596 atomic regions from SNP 73093 to 73693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,502 DEBUG Processing 347/662 atomic regions from SNP 103976 to 104576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,569 DEBUG Processing 628/705 atomic regions from SNP 188166 to 188766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,638 DEBUG Processing 68/561 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,660 DEBUG Processing 523/675 atomic regions from SNP 156748 to 157348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,688 DEBUG Processing 245/596 atomic regions from SNP 73393 to 73993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,736 DEBUG Processing 348/662 atomic regions from SNP 104276 to 104876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,808 DEBUG Processing 629/705 atomic regions from SNP 188466 to 189066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,858 DEBUG Processing 69/561 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,906 DEBUG Processing 524/675 atomic regions from SNP 157048 to 157648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,926 DEBUG Processing 246/596 atomic regions from SNP 73693 to 74293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,976 DEBUG Processing 349/662 atomic regions from SNP 104576 to 105176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,067 DEBUG Processing 70/561 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,070 DEBUG Processing 630/705 atomic regions from SNP 188766 to 189366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,141 DEBUG Processing 525/675 atomic regions from SNP 157348 to 157948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,156 DEBUG Processing 247/596 atomic regions from SNP 73993 to 74593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,216 DEBUG Processing 350/662 atomic regions from SNP 104876 to 105476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,275 DEBUG Processing 71/561 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,329 DEBUG Processing 631/705 atomic regions from SNP 189066 to 189666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,380 DEBUG Processing 526/675 atomic regions from SNP 157648 to 158248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,381 DEBUG Processing 248/596 atomic regions from SNP 74293 to 74893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,457 DEBUG Processing 351/662 atomic regions from SNP 105176 to 105776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,485 DEBUG Processing 72/561 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,556 DEBUG Processing 632/705 atomic regions from SNP 189366 to 189966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,596 DEBUG Processing 249/596 atomic regions from SNP 74593 to 75193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,614 DEBUG Processing 527/675 atomic regions from SNP 157948 to 158548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,689 DEBUG Processing 352/662 atomic regions from SNP 105476 to 106076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,697 DEBUG Processing 73/561 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,776 DEBUG Processing 633/705 atomic regions from SNP 189666 to 190266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,807 DEBUG Processing 250/596 atomic regions from SNP 74893 to 75493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,843 DEBUG Processing 528/675 atomic regions from SNP 158248 to 158848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,911 DEBUG Processing 74/561 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,922 DEBUG Processing 353/662 atomic regions from SNP 105776 to 106376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,992 DEBUG Processing 634/705 atomic regions from SNP 189966 to 190566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,030 DEBUG Processing 251/596 atomic regions from SNP 75193 to 75793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,070 DEBUG Processing 529/675 atomic regions from SNP 158548 to 159148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,126 DEBUG Processing 75/561 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,152 DEBUG Processing 354/662 atomic regions from SNP 106076 to 106676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,216 DEBUG Processing 635/705 atomic regions from SNP 190266 to 190866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,247 DEBUG Processing 252/596 atomic regions from SNP 75493 to 76093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,303 DEBUG Processing 530/675 atomic regions from SNP 158848 to 159448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,336 DEBUG Processing 76/561 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,381 DEBUG Processing 355/662 atomic regions from SNP 106376 to 106976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,443 DEBUG Processing 636/705 atomic regions from SNP 190566 to 191166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,462 DEBUG Processing 253/596 atomic regions from SNP 75793 to 76393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,544 DEBUG Processing 77/561 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,545 DEBUG Processing 531/675 atomic regions from SNP 159148 to 159748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,609 DEBUG Processing 356/662 atomic regions from SNP 106676 to 107276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,664 DEBUG Processing 637/705 atomic regions from SNP 190866 to 191466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,680 DEBUG Processing 254/596 atomic regions from SNP 76093 to 76693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,754 DEBUG Processing 78/561 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,780 DEBUG Processing 532/675 atomic regions from SNP 159448 to 160048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,834 DEBUG Processing 357/662 atomic regions from SNP 106976 to 107576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,893 DEBUG Processing 638/705 atomic regions from SNP 191166 to 191766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,897 DEBUG Processing 255/596 atomic regions from SNP 76393 to 76993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,967 DEBUG Processing 79/561 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,001 DEBUG Processing 533/675 atomic regions from SNP 159748 to 160348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,061 DEBUG Processing 358/662 atomic regions from SNP 107276 to 107876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,114 DEBUG Processing 256/596 atomic regions from SNP 76693 to 77293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,126 DEBUG Processing 639/705 atomic regions from SNP 191466 to 192066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,181 DEBUG Processing 80/561 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,224 DEBUG Processing 534/675 atomic regions from SNP 160048 to 160648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,288 DEBUG Processing 359/662 atomic regions from SNP 107576 to 108176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,333 DEBUG Processing 257/596 atomic regions from SNP 76993 to 77593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,362 DEBUG Processing 640/705 atomic regions from SNP 191766 to 192366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,397 DEBUG Processing 81/561 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,448 DEBUG Processing 535/675 atomic regions from SNP 160348 to 160948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,545 DEBUG Processing 360/662 atomic regions from SNP 107876 to 108476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,555 DEBUG Processing 258/596 atomic regions from SNP 77293 to 77893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,603 DEBUG Processing 641/705 atomic regions from SNP 192066 to 192666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,629 DEBUG Processing 82/561 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,672 DEBUG Processing 536/675 atomic regions from SNP 160648 to 161248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,775 DEBUG Processing 259/596 atomic regions from SNP 77593 to 78193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,812 DEBUG Processing 361/662 atomic regions from SNP 108176 to 108776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,845 DEBUG Processing 642/705 atomic regions from SNP 192366 to 192966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,879 DEBUG Processing 83/561 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,902 DEBUG Processing 537/675 atomic regions from SNP 160948 to 161548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,992 DEBUG Processing 260/596 atomic regions from SNP 77893 to 78493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,069 DEBUG Processing 362/662 atomic regions from SNP 108476 to 109076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,081 DEBUG Processing 643/705 atomic regions from SNP 192666 to 193266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,131 DEBUG Processing 84/561 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,138 DEBUG Processing 538/675 atomic regions from SNP 161248 to 161848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,212 DEBUG Processing 261/596 atomic regions from SNP 78193 to 78793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,318 DEBUG Processing 363/662 atomic regions from SNP 108776 to 109376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,321 DEBUG Processing 644/705 atomic regions from SNP 192966 to 193566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,371 DEBUG Processing 85/561 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,391 DEBUG Processing 539/675 atomic regions from SNP 161548 to 162148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,434 DEBUG Processing 262/596 atomic regions from SNP 78493 to 79093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,558 DEBUG Processing 645/705 atomic regions from SNP 193266 to 193866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,580 DEBUG Processing 364/662 atomic regions from SNP 109076 to 109676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,623 DEBUG Processing 86/561 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,658 DEBUG Processing 263/596 atomic regions from SNP 78793 to 79393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,663 DEBUG Processing 540/675 atomic regions from SNP 161848 to 162448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,792 DEBUG Processing 646/705 atomic regions from SNP 193566 to 194166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,837 DEBUG Processing 365/662 atomic regions from SNP 109376 to 109976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,870 DEBUG Processing 87/561 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,885 DEBUG Processing 264/596 atomic regions from SNP 79093 to 79693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,938 DEBUG Processing 541/675 atomic regions from SNP 162148 to 162748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,026 DEBUG Processing 647/705 atomic regions from SNP 193866 to 194466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,085 DEBUG Processing 366/662 atomic regions from SNP 109676 to 110276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,109 DEBUG Processing 265/596 atomic regions from SNP 79393 to 79993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,121 DEBUG Processing 88/561 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,199 DEBUG Processing 542/675 atomic regions from SNP 162448 to 163048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,263 DEBUG Processing 648/705 atomic regions from SNP 194166 to 194766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,332 DEBUG Processing 266/596 atomic regions from SNP 79693 to 80293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,338 DEBUG Processing 367/662 atomic regions from SNP 109976 to 110576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,371 DEBUG Processing 89/561 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,458 DEBUG Processing 543/675 atomic regions from SNP 162748 to 163348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,497 DEBUG Processing 649/705 atomic regions from SNP 194466 to 195066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,561 DEBUG Processing 267/596 atomic regions from SNP 79993 to 80593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,593 DEBUG Processing 368/662 atomic regions from SNP 110276 to 110876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,618 DEBUG Processing 90/561 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,714 DEBUG Processing 544/675 atomic regions from SNP 163048 to 163648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,733 DEBUG Processing 650/705 atomic regions from SNP 194766 to 195366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,778 DEBUG Processing 268/596 atomic regions from SNP 80293 to 80893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,835 DEBUG Processing 369/662 atomic regions from SNP 110576 to 111176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,866 DEBUG Processing 91/561 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,956 DEBUG Processing 545/675 atomic regions from SNP 163348 to 163948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,967 DEBUG Processing 651/705 atomic regions from SNP 195066 to 195666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,990 DEBUG Processing 269/596 atomic regions from SNP 80593 to 81193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,073 DEBUG Processing 370/662 atomic regions from SNP 110876 to 111476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,107 DEBUG Processing 92/561 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,201 DEBUG Processing 652/705 atomic regions from SNP 195366 to 195966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,203 DEBUG Processing 270/596 atomic regions from SNP 80893 to 81493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,217 DEBUG Processing 546/675 atomic regions from SNP 163648 to 164248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,335 DEBUG Processing 371/662 atomic regions from SNP 111176 to 111776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,343 DEBUG Processing 93/561 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,422 DEBUG Processing 271/596 atomic regions from SNP 81193 to 81793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,435 DEBUG Processing 653/705 atomic regions from SNP 195666 to 196266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,495 DEBUG Processing 547/675 atomic regions from SNP 163948 to 164548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,571 DEBUG Processing 94/561 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,601 DEBUG Processing 372/662 atomic regions from SNP 111476 to 112076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,633 DEBUG Processing 272/596 atomic regions from SNP 81493 to 82093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,667 DEBUG Processing 654/705 atomic regions from SNP 195966 to 196566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,760 DEBUG Processing 548/675 atomic regions from SNP 164248 to 164848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,780 DEBUG Processing 95/561 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,846 DEBUG Processing 373/662 atomic regions from SNP 111776 to 112376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,849 DEBUG Processing 273/596 atomic regions from SNP 81793 to 82393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,905 DEBUG Processing 655/705 atomic regions from SNP 196266 to 196866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,986 DEBUG Processing 96/561 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,999 DEBUG Processing 549/675 atomic regions from SNP 164548 to 165148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,072 DEBUG Processing 274/596 atomic regions from SNP 82093 to 82693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,087 DEBUG Processing 374/662 atomic regions from SNP 112076 to 112676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,137 DEBUG Processing 656/705 atomic regions from SNP 196566 to 197166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,181 DEBUG Processing 97/561 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,237 DEBUG Processing 550/675 atomic regions from SNP 164848 to 165448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,280 DEBUG Processing 275/596 atomic regions from SNP 82393 to 82993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,323 DEBUG Processing 375/662 atomic regions from SNP 112376 to 112976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,369 DEBUG Processing 657/705 atomic regions from SNP 196866 to 197466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,382 DEBUG Processing 98/561 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,503 DEBUG Processing 276/596 atomic regions from SNP 82693 to 83293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,514 DEBUG Processing 551/675 atomic regions from SNP 165148 to 165748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,560 DEBUG Processing 376/662 atomic regions from SNP 112676 to 113276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,581 DEBUG Processing 99/561 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,603 DEBUG Processing 658/705 atomic regions from SNP 197166 to 197766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,716 DEBUG Processing 277/596 atomic regions from SNP 82993 to 83593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,773 DEBUG Processing 552/675 atomic regions from SNP 165448 to 166048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,791 DEBUG Processing 100/561 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,814 DEBUG Processing 377/662 atomic regions from SNP 112976 to 113576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,837 DEBUG Processing 659/705 atomic regions from SNP 197466 to 198066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,921 DEBUG Processing 278/596 atomic regions from SNP 83293 to 83893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,014 DEBUG Processing 101/561 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,030 DEBUG Processing 553/675 atomic regions from SNP 165748 to 166348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,076 DEBUG Processing 378/662 atomic regions from SNP 113276 to 113876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,077 DEBUG Processing 660/705 atomic regions from SNP 197766 to 198366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,134 DEBUG Processing 279/596 atomic regions from SNP 83593 to 84193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,216 DEBUG Processing 102/561 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,271 DEBUG Processing 554/675 atomic regions from SNP 166048 to 166648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,316 DEBUG Processing 661/705 atomic regions from SNP 198066 to 198666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,334 DEBUG Processing 379/662 atomic regions from SNP 113576 to 114176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,348 DEBUG Processing 280/596 atomic regions from SNP 83893 to 84493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,449 DEBUG Processing 103/561 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,513 DEBUG Processing 555/675 atomic regions from SNP 166348 to 166948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,558 DEBUG Processing 662/705 atomic regions from SNP 198366 to 198966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,569 DEBUG Processing 281/596 atomic regions from SNP 84193 to 84793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,578 DEBUG Processing 380/662 atomic regions from SNP 113876 to 114476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,693 DEBUG Processing 104/561 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,739 DEBUG Processing 556/675 atomic regions from SNP 166648 to 167248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,790 DEBUG Processing 282/596 atomic regions from SNP 84493 to 85093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,793 DEBUG Processing 663/705 atomic regions from SNP 198666 to 199266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,816 DEBUG Processing 381/662 atomic regions from SNP 114176 to 114776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,916 DEBUG Processing 105/561 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,978 DEBUG Processing 557/675 atomic regions from SNP 166948 to 167548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,012 DEBUG Processing 283/596 atomic regions from SNP 84793 to 85393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,042 DEBUG Processing 664/705 atomic regions from SNP 198966 to 199566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,068 DEBUG Processing 382/662 atomic regions from SNP 114476 to 115076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,115 DEBUG Processing 106/561 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,209 DEBUG Processing 558/675 atomic regions from SNP 167248 to 167848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,243 DEBUG Processing 284/596 atomic regions from SNP 85093 to 85693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,303 DEBUG Processing 665/705 atomic regions from SNP 199266 to 199866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,305 DEBUG Processing 383/662 atomic regions from SNP 114776 to 115376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,330 DEBUG Processing 107/561 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,447 DEBUG Processing 559/675 atomic regions from SNP 167548 to 168148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,458 DEBUG Processing 285/596 atomic regions from SNP 85393 to 85993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,538 DEBUG Processing 384/662 atomic regions from SNP 115076 to 115676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,567 DEBUG Processing 108/561 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,573 DEBUG Processing 666/705 atomic regions from SNP 199566 to 200166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,674 DEBUG Processing 286/596 atomic regions from SNP 85693 to 86293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,676 DEBUG Processing 560/675 atomic regions from SNP 167848 to 168448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,764 DEBUG Processing 385/662 atomic regions from SNP 115376 to 115976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,790 DEBUG Processing 109/561 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,835 DEBUG Processing 667/705 atomic regions from SNP 199866 to 200466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,891 DEBUG Processing 287/596 atomic regions from SNP 85993 to 86593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,915 DEBUG Processing 561/675 atomic regions from SNP 168148 to 168748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,998 DEBUG Processing 386/662 atomic regions from SNP 115676 to 116276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,006 DEBUG Processing 110/561 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,097 DEBUG Processing 668/705 atomic regions from SNP 200166 to 200766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,110 DEBUG Processing 288/596 atomic regions from SNP 86293 to 86893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,174 DEBUG Processing 562/675 atomic regions from SNP 168448 to 169048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,225 DEBUG Processing 111/561 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,231 DEBUG Processing 387/662 atomic regions from SNP 115976 to 116576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,323 DEBUG Processing 289/596 atomic regions from SNP 86593 to 87193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,355 DEBUG Processing 669/705 atomic regions from SNP 200466 to 201066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,435 DEBUG Processing 563/675 atomic regions from SNP 168748 to 169348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,449 DEBUG Processing 112/561 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,454 DEBUG Processing 388/662 atomic regions from SNP 116276 to 116876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,534 DEBUG Processing 290/596 atomic regions from SNP 86893 to 87493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,613 DEBUG Processing 670/705 atomic regions from SNP 200766 to 201366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,660 DEBUG Processing 564/675 atomic regions from SNP 169048 to 169648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,668 DEBUG Processing 113/561 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,676 DEBUG Processing 389/662 atomic regions from SNP 116576 to 117176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,746 DEBUG Processing 291/596 atomic regions from SNP 87193 to 87793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,870 DEBUG Processing 671/705 atomic regions from SNP 201066 to 201666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,884 DEBUG Processing 114/561 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,886 DEBUG Processing 565/675 atomic regions from SNP 169348 to 169948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,923 DEBUG Processing 390/662 atomic regions from SNP 116876 to 117476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,958 DEBUG Processing 292/596 atomic regions from SNP 87493 to 88093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,107 DEBUG Processing 115/561 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,114 DEBUG Processing 566/675 atomic regions from SNP 169648 to 170248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,117 DEBUG Processing 672/705 atomic regions from SNP 201366 to 201966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,143 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:58:01,157 DEBUG Processing 391/662 atomic regions from SNP 117176 to 117776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,189 DEBUG Processing 293/596 atomic regions from SNP 87793 to 88393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,326 DEBUG Processing 116/561 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,339 DEBUG Processing 567/675 atomic regions from SNP 169948 to 170548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,376 DEBUG Processing 673/705 atomic regions from SNP 201666 to 202266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,391 DEBUG Processing 392/662 atomic regions from SNP 117476 to 118076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,406 DEBUG Processing 294/596 atomic regions from SNP 88093 to 88693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,540 DEBUG Processing 117/561 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,580 DEBUG Processing 568/675 atomic regions from SNP 170248 to 170848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,619 DEBUG Processing 295/596 atomic regions from SNP 88393 to 88993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,622 DEBUG Processing 393/662 atomic regions from SNP 117776 to 118376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,641 DEBUG Processing 674/705 atomic regions from SNP 201966 to 202566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,762 DEBUG Processing 118/561 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,826 DEBUG Processing 569/675 atomic regions from SNP 170548 to 171148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,833 DEBUG Processing 296/596 atomic regions from SNP 88693 to 89293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,850 DEBUG Processing 394/662 atomic regions from SNP 118076 to 118676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,903 DEBUG Processing 675/705 atomic regions from SNP 202266 to 202866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,991 DEBUG Processing 119/561 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,049 DEBUG Processing 297/596 atomic regions from SNP 88993 to 89593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,058 DEBUG Processing 570/675 atomic regions from SNP 170848 to 171448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,091 DEBUG Processing 395/662 atomic regions from SNP 118376 to 118976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,169 DEBUG Processing 676/705 atomic regions from SNP 202566 to 203166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,195 DEBUG Processing 120/561 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,259 DEBUG Processing 298/596 atomic regions from SNP 89293 to 89893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,283 DEBUG Processing 571/675 atomic regions from SNP 171148 to 171748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,319 DEBUG Processing 396/662 atomic regions from SNP 118676 to 119276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,392 DEBUG Processing 121/561 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,423 DEBUG Processing 677/705 atomic regions from SNP 202866 to 203466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,468 DEBUG Processing 299/596 atomic regions from SNP 89593 to 90193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,506 DEBUG Processing 572/675 atomic regions from SNP 171448 to 172048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,546 DEBUG Processing 397/662 atomic regions from SNP 118976 to 119576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,589 DEBUG Processing 122/561 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,673 DEBUG Processing 300/596 atomic regions from SNP 89893 to 90493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,680 DEBUG Processing 678/705 atomic regions from SNP 203166 to 203766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,734 DEBUG Processing 573/675 atomic regions from SNP 171748 to 172348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,772 DEBUG Processing 398/662 atomic regions from SNP 119276 to 119876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,790 DEBUG Processing 123/561 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,880 DEBUG Processing 301/596 atomic regions from SNP 90193 to 90793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,934 DEBUG Processing 679/705 atomic regions from SNP 203466 to 204066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,986 DEBUG Processing 574/675 atomic regions from SNP 172048 to 172648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,993 DEBUG Processing 124/561 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,005 DEBUG Processing 399/662 atomic regions from SNP 119576 to 120176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,109 DEBUG Processing 302/596 atomic regions from SNP 90493 to 91093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,179 DEBUG Processing 680/705 atomic regions from SNP 203766 to 204366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,195 DEBUG Processing 125/561 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,228 DEBUG Processing 575/675 atomic regions from SNP 172348 to 172948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,253 DEBUG Processing 400/662 atomic regions from SNP 119876 to 120476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,312 DEBUG Processing 303/596 atomic regions from SNP 90793 to 91393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,402 DEBUG Processing 126/561 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,445 DEBUG Processing 681/705 atomic regions from SNP 204066 to 204666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,460 DEBUG Processing 576/675 atomic regions from SNP 172648 to 173248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,484 DEBUG Processing 401/662 atomic regions from SNP 120176 to 120776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,512 DEBUG Processing 304/596 atomic regions from SNP 91093 to 91693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,602 DEBUG Processing 127/561 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,691 DEBUG Processing 577/675 atomic regions from SNP 172948 to 173548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,710 DEBUG Processing 682/705 atomic regions from SNP 204366 to 204966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,711 DEBUG Processing 305/596 atomic regions from SNP 91393 to 91993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,716 DEBUG Processing 402/662 atomic regions from SNP 120476 to 121076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,796 DEBUG Processing 128/561 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,912 DEBUG Processing 306/596 atomic regions from SNP 91693 to 92293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,915 DEBUG Processing 578/675 atomic regions from SNP 173248 to 173848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,954 DEBUG Processing 403/662 atomic regions from SNP 120776 to 121376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,959 DEBUG Processing 683/705 atomic regions from SNP 204666 to 205266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,988 DEBUG Processing 129/561 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,111 DEBUG Processing 307/596 atomic regions from SNP 91993 to 92593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,136 DEBUG Processing 579/675 atomic regions from SNP 173548 to 174148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,182 DEBUG Processing 130/561 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,206 DEBUG Processing 684/705 atomic regions from SNP 204966 to 205566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,209 DEBUG Processing 404/662 atomic regions from SNP 121076 to 121676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,308 DEBUG Processing 308/596 atomic regions from SNP 92293 to 92893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,360 DEBUG Processing 580/675 atomic regions from SNP 173848 to 174448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,375 DEBUG Processing 131/561 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,462 DEBUG Processing 405/662 atomic regions from SNP 121376 to 121976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,462 DEBUG Processing 685/705 atomic regions from SNP 205266 to 205866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,510 DEBUG Processing 309/596 atomic regions from SNP 92593 to 93193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,572 DEBUG Processing 132/561 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,590 DEBUG Processing 581/675 atomic regions from SNP 174148 to 174748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,711 DEBUG Processing 310/596 atomic regions from SNP 92893 to 93493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,712 DEBUG Processing 686/705 atomic regions from SNP 205566 to 206166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,725 DEBUG Processing 406/662 atomic regions from SNP 121676 to 122276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,776 DEBUG Processing 133/561 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,843 DEBUG Processing 582/675 atomic regions from SNP 174448 to 175048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,916 DEBUG Processing 311/596 atomic regions from SNP 93193 to 93793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,951 DEBUG Processing 687/705 atomic regions from SNP 205866 to 206466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,985 DEBUG Processing 134/561 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,993 DEBUG Processing 407/662 atomic regions from SNP 121976 to 122576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,089 DEBUG Processing 583/675 atomic regions from SNP 174748 to 175348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,125 DEBUG Processing 312/596 atomic regions from SNP 93493 to 94093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,185 DEBUG Processing 688/705 atomic regions from SNP 206166 to 206766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,192 DEBUG Processing 135/561 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,252 DEBUG Processing 408/662 atomic regions from SNP 122276 to 122876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,310 DEBUG Processing 584/675 atomic regions from SNP 175048 to 175648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,327 DEBUG Processing 313/596 atomic regions from SNP 93793 to 94393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,402 DEBUG Processing 136/561 atomic regions from SNP 40635 to 41235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,429 DEBUG Processing 689/705 atomic regions from SNP 206466 to 207066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,513 DEBUG Processing 409/662 atomic regions from SNP 122576 to 123176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,531 DEBUG Processing 585/675 atomic regions from SNP 175348 to 175948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,537 DEBUG Processing 314/596 atomic regions from SNP 94093 to 94693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,609 DEBUG Processing 137/561 atomic regions from SNP 40935 to 41535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,686 DEBUG Processing 690/705 atomic regions from SNP 206766 to 207366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,740 DEBUG Processing 315/596 atomic regions from SNP 94393 to 94993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,741 DEBUG Processing 410/662 atomic regions from SNP 122876 to 123476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,758 DEBUG Processing 586/675 atomic regions from SNP 175648 to 176248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,813 DEBUG Processing 138/561 atomic regions from SNP 41235 to 41835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,936 DEBUG Processing 691/705 atomic regions from SNP 207066 to 207666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,950 DEBUG Processing 316/596 atomic regions from SNP 94693 to 95293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,974 DEBUG Processing 411/662 atomic regions from SNP 123176 to 123776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,994 DEBUG Processing 587/675 atomic regions from SNP 175948 to 176548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,026 DEBUG Processing 139/561 atomic regions from SNP 41535 to 42135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,176 DEBUG Processing 317/596 atomic regions from SNP 94993 to 95593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,184 DEBUG Processing 692/705 atomic regions from SNP 207366 to 207966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,207 DEBUG Processing 412/662 atomic regions from SNP 123476 to 124076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,221 DEBUG Processing 588/675 atomic regions from SNP 176248 to 176848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,236 DEBUG Processing 140/561 atomic regions from SNP 41835 to 42435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,418 DEBUG Processing 693/705 atomic regions from SNP 207666 to 208266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,425 DEBUG Processing 318/596 atomic regions from SNP 95293 to 95893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,435 DEBUG Processing 413/662 atomic regions from SNP 123776 to 124376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,452 DEBUG Processing 589/675 atomic regions from SNP 176548 to 177148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,454 DEBUG Processing 141/561 atomic regions from SNP 42135 to 42735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,673 DEBUG Processing 414/662 atomic regions from SNP 124076 to 124676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,675 DEBUG Processing 142/561 atomic regions from SNP 42435 to 43035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,676 DEBUG Processing 694/705 atomic regions from SNP 207966 to 208566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,682 DEBUG Processing 319/596 atomic regions from SNP 95593 to 96193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,690 DEBUG Processing 590/675 atomic regions from SNP 176848 to 177448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,894 DEBUG Processing 143/561 atomic regions from SNP 42735 to 43335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,907 DEBUG Processing 415/662 atomic regions from SNP 124376 to 124976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,928 DEBUG Processing 591/675 atomic regions from SNP 177148 to 177748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,934 DEBUG Processing 320/596 atomic regions from SNP 95893 to 96493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,946 DEBUG Processing 695/705 atomic regions from SNP 208266 to 208866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,111 DEBUG Processing 144/561 atomic regions from SNP 43035 to 43635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,138 DEBUG Processing 416/662 atomic regions from SNP 124676 to 125276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,167 DEBUG Processing 592/675 atomic regions from SNP 177448 to 178048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,169 DEBUG Processing 321/596 atomic regions from SNP 96193 to 96793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,211 DEBUG Processing 696/705 atomic regions from SNP 208566 to 209166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,330 DEBUG Processing 145/561 atomic regions from SNP 43335 to 43935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,371 DEBUG Processing 417/662 atomic regions from SNP 124976 to 125576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,408 DEBUG Processing 322/596 atomic regions from SNP 96493 to 97093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,409 DEBUG Processing 593/675 atomic regions from SNP 177748 to 178348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,486 DEBUG Processing 697/705 atomic regions from SNP 208866 to 209466 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,547 DEBUG Processing 146/561 atomic regions from SNP 43635 to 44235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,604 DEBUG Processing 418/662 atomic regions from SNP 125276 to 125876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,644 DEBUG Processing 594/675 atomic regions from SNP 178048 to 178648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,660 DEBUG Processing 323/596 atomic regions from SNP 96793 to 97393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,760 DEBUG Processing 698/705 atomic regions from SNP 209166 to 209766 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,768 DEBUG Processing 147/561 atomic regions from SNP 43935 to 44535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,839 DEBUG Processing 419/662 atomic regions from SNP 125576 to 126176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,886 DEBUG Processing 595/675 atomic regions from SNP 178348 to 178948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,908 DEBUG Processing 324/596 atomic regions from SNP 97093 to 97693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,983 DEBUG Processing 148/561 atomic regions from SNP 44235 to 44835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,035 DEBUG Processing 699/705 atomic regions from SNP 209466 to 210066 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,081 DEBUG Processing 420/662 atomic regions from SNP 125876 to 126476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,124 DEBUG Processing 596/675 atomic regions from SNP 178648 to 179248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,160 DEBUG Processing 325/596 atomic regions from SNP 97393 to 97993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,195 DEBUG Processing 149/561 atomic regions from SNP 44535 to 45135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,320 DEBUG Processing 700/705 atomic regions from SNP 209766 to 210366 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,329 DEBUG Processing 421/662 atomic regions from SNP 126176 to 126776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,363 DEBUG Processing 597/675 atomic regions from SNP 178948 to 179548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,402 DEBUG Processing 326/596 atomic regions from SNP 97693 to 98293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,406 DEBUG Processing 150/561 atomic regions from SNP 44835 to 45435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,576 DEBUG Processing 422/662 atomic regions from SNP 126476 to 127076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,589 DEBUG Processing 701/705 atomic regions from SNP 210066 to 210666 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,602 DEBUG Processing 598/675 atomic regions from SNP 179248 to 179848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,624 DEBUG Processing 151/561 atomic regions from SNP 45135 to 45735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,652 DEBUG Processing 327/596 atomic regions from SNP 97993 to 98593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,807 DEBUG Processing 423/662 atomic regions from SNP 126776 to 127376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,838 DEBUG Processing 152/561 atomic regions from SNP 45435 to 46035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,842 DEBUG Processing 702/705 atomic regions from SNP 210366 to 210966 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,847 DEBUG Processing 599/675 atomic regions from SNP 179548 to 180148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,880 DEBUG Processing 328/596 atomic regions from SNP 98293 to 98893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,035 DEBUG Processing 424/662 atomic regions from SNP 127076 to 127676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,055 DEBUG Processing 153/561 atomic regions from SNP 45735 to 46335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,096 DEBUG Processing 703/705 atomic regions from SNP 210666 to 211266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,096 DEBUG Processing 600/675 atomic regions from SNP 179848 to 180448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,103 DEBUG Processing 329/596 atomic regions from SNP 98593 to 99193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,259 DEBUG Processing 425/662 atomic regions from SNP 127376 to 127976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,267 DEBUG Processing 154/561 atomic regions from SNP 46035 to 46635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,316 DEBUG Processing 330/596 atomic regions from SNP 98893 to 99493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,323 DEBUG Processing 601/675 atomic regions from SNP 180148 to 180748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,338 DEBUG Processing 704/705 atomic regions from SNP 210966 to 211566 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,486 DEBUG Processing 155/561 atomic regions from SNP 46335 to 46935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,499 DEBUG Processing 426/662 atomic regions from SNP 127676 to 128276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,541 DEBUG Processing 331/596 atomic regions from SNP 99193 to 99793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,556 DEBUG Processing 602/675 atomic regions from SNP 180448 to 181048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,573 DEBUG Processing 705/705 atomic regions from SNP 211266 to 211866 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,703 DEBUG Processing 156/561 atomic regions from SNP 46635 to 47235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,718 DEBUG Unique SNPs positions in subchromosome 1: 211867 2025-01-31 09:58:09,756 DEBUG Processing 427/662 atomic regions from SNP 127976 to 128576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,766 DEBUG Processing 332/596 atomic regions from SNP 99493 to 100093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,788 DEBUG Processing 603/675 atomic regions from SNP 180748 to 181348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,923 DEBUG Processing 157/561 atomic regions from SNP 46935 to 47535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,985 DEBUG Processing 333/596 atomic regions from SNP 99793 to 100393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,012 DEBUG Processing 604/675 atomic regions from SNP 181048 to 181648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,013 DEBUG Processing 428/662 atomic regions from SNP 128276 to 128876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,144 DEBUG Processing 158/561 atomic regions from SNP 47235 to 47835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,214 DEBUG Processing 334/596 atomic regions from SNP 100093 to 100693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,241 DEBUG Processing 605/675 atomic regions from SNP 181348 to 181948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,257 DEBUG Processing 429/662 atomic regions from SNP 128576 to 129176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,351 DEBUG Processing 159/561 atomic regions from SNP 47535 to 48135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,427 DEBUG Processing 335/596 atomic regions from SNP 100393 to 100993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,489 DEBUG Processing 606/675 atomic regions from SNP 181648 to 182248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,518 DEBUG Processing 430/662 atomic regions from SNP 128876 to 129476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,569 DEBUG Processing 160/561 atomic regions from SNP 47835 to 48435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,644 DEBUG Processing 336/596 atomic regions from SNP 100693 to 101293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,734 DEBUG Processing 607/675 atomic regions from SNP 181948 to 182548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,780 DEBUG Processing 161/561 atomic regions from SNP 48135 to 48735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,785 DEBUG Processing 431/662 atomic regions from SNP 129176 to 129776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,861 DEBUG Processing 337/596 atomic regions from SNP 100993 to 101593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,988 DEBUG Processing 608/675 atomic regions from SNP 182248 to 182848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,995 DEBUG Processing 162/561 atomic regions from SNP 48435 to 49035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,044 DEBUG Processing 432/662 atomic regions from SNP 129476 to 130076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,085 DEBUG Processing 338/596 atomic regions from SNP 101293 to 101893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,225 DEBUG Processing 163/561 atomic regions from SNP 48735 to 49335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,228 DEBUG Processing 609/675 atomic regions from SNP 182548 to 183148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,287 DEBUG Processing 433/662 atomic regions from SNP 129776 to 130376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,307 DEBUG Processing 339/596 atomic regions from SNP 101593 to 102193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,459 DEBUG Processing 164/561 atomic regions from SNP 49035 to 49635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,465 DEBUG Processing 610/675 atomic regions from SNP 182848 to 183448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,523 DEBUG Processing 434/662 atomic regions from SNP 130076 to 130676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,527 DEBUG Processing 340/596 atomic regions from SNP 101893 to 102493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,675 DEBUG Processing 165/561 atomic regions from SNP 49335 to 49935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,698 DEBUG Processing 611/675 atomic regions from SNP 183148 to 183748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,749 DEBUG Processing 341/596 atomic regions from SNP 102193 to 102793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,757 DEBUG Processing 435/662 atomic regions from SNP 130376 to 130976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,895 DEBUG Processing 166/561 atomic regions from SNP 49635 to 50235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,932 DEBUG Processing 612/675 atomic regions from SNP 183448 to 184048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,972 DEBUG Processing 342/596 atomic regions from SNP 102493 to 103093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,992 DEBUG Processing 436/662 atomic regions from SNP 130676 to 131276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,115 DEBUG Processing 167/561 atomic regions from SNP 49935 to 50535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,165 DEBUG Processing 613/675 atomic regions from SNP 183748 to 184348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,200 DEBUG Processing 343/596 atomic regions from SNP 102793 to 103393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,227 DEBUG Processing 437/662 atomic regions from SNP 130976 to 131576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,348 DEBUG Processing 168/561 atomic regions from SNP 50235 to 50835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,390 DEBUG Processing 614/675 atomic regions from SNP 184048 to 184648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,434 DEBUG Processing 344/596 atomic regions from SNP 103093 to 103693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,455 DEBUG Processing 438/662 atomic regions from SNP 131276 to 131876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,580 DEBUG Processing 169/561 atomic regions from SNP 50535 to 51135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,627 DEBUG Processing 615/675 atomic regions from SNP 184348 to 184948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,659 DEBUG Processing 345/596 atomic regions from SNP 103393 to 103993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,689 DEBUG Processing 439/662 atomic regions from SNP 131576 to 132176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,817 DEBUG Processing 170/561 atomic regions from SNP 50835 to 51435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,881 DEBUG Processing 346/596 atomic regions from SNP 103693 to 104293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,891 DEBUG Processing 616/675 atomic regions from SNP 184648 to 185248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,930 DEBUG Processing 440/662 atomic regions from SNP 131876 to 132476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,049 DEBUG Processing 171/561 atomic regions from SNP 51135 to 51735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,111 DEBUG Processing 347/596 atomic regions from SNP 103993 to 104593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,165 DEBUG Processing 617/675 atomic regions from SNP 184948 to 185548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,172 DEBUG Processing 441/662 atomic regions from SNP 132176 to 132776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,274 DEBUG Processing 172/561 atomic regions from SNP 51435 to 52035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,325 DEBUG Processing 348/596 atomic regions from SNP 104293 to 104893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,411 DEBUG Processing 442/662 atomic regions from SNP 132476 to 133076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,415 DEBUG Processing 618/675 atomic regions from SNP 185248 to 185848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,505 DEBUG Processing 173/561 atomic regions from SNP 51735 to 52335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,541 DEBUG Processing 349/596 atomic regions from SNP 104593 to 105193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,646 DEBUG Processing 443/662 atomic regions from SNP 132776 to 133376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,649 DEBUG Processing 619/675 atomic regions from SNP 185548 to 186148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,743 DEBUG Processing 174/561 atomic regions from SNP 52035 to 52635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,764 DEBUG Processing 350/596 atomic regions from SNP 104893 to 105493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,878 DEBUG Processing 444/662 atomic regions from SNP 133076 to 133676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,879 DEBUG Processing 620/675 atomic regions from SNP 185848 to 186448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,978 DEBUG Processing 175/561 atomic regions from SNP 52335 to 52935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,988 DEBUG Processing 351/596 atomic regions from SNP 105193 to 105793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,115 DEBUG Processing 621/675 atomic regions from SNP 186148 to 186748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,127 DEBUG Processing 445/662 atomic regions from SNP 133376 to 133976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,204 DEBUG Processing 352/596 atomic regions from SNP 105493 to 106093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,229 DEBUG Processing 176/561 atomic regions from SNP 52635 to 53235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,350 DEBUG Processing 622/675 atomic regions from SNP 186448 to 187048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,381 DEBUG Processing 446/662 atomic regions from SNP 133676 to 134276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,420 DEBUG Processing 353/596 atomic regions from SNP 105793 to 106393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,477 DEBUG Processing 177/561 atomic regions from SNP 52935 to 53535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,581 DEBUG Processing 623/675 atomic regions from SNP 186748 to 187348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,632 DEBUG Processing 354/596 atomic regions from SNP 106093 to 106693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,633 DEBUG Processing 447/662 atomic regions from SNP 133976 to 134576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,715 DEBUG Processing 178/561 atomic regions from SNP 53235 to 53835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,814 DEBUG Processing 624/675 atomic regions from SNP 187048 to 187648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,870 DEBUG Processing 355/596 atomic regions from SNP 106393 to 106993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,900 DEBUG Processing 448/662 atomic regions from SNP 134276 to 134876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,904 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:58:14,906 DEBUG chr17: Signal quantile: 0.987. signal threshold: 13. Best RMSEA: 0.010 2025-01-31 09:58:14,955 DEBUG Processing 179/561 atomic regions from SNP 53535 to 54135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,044 DEBUG Processing 625/675 atomic regions from SNP 187348 to 187948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,120 DEBUG Processing 356/596 atomic regions from SNP 106693 to 107293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,156 DEBUG Processing 449/662 atomic regions from SNP 134576 to 135176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,196 DEBUG Processing 180/561 atomic regions from SNP 53835 to 54435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,267 DEBUG Processing 626/675 atomic regions from SNP 187648 to 188248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,362 DEBUG Processing 357/596 atomic regions from SNP 106993 to 107593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,405 DEBUG Processing 450/662 atomic regions from SNP 134876 to 135476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,430 DEBUG Processing 181/561 atomic regions from SNP 54135 to 54735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,509 DEBUG Processing 627/675 atomic regions from SNP 187948 to 188548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,590 DEBUG Processing 358/596 atomic regions from SNP 107293 to 107893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,650 DEBUG Processing 451/662 atomic regions from SNP 135176 to 135776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,661 DEBUG Processing 182/561 atomic regions from SNP 54435 to 55035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,763 DEBUG Processing 628/675 atomic regions from SNP 188248 to 188848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,815 DEBUG Processing 359/596 atomic regions from SNP 107593 to 108193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,878 DEBUG Processing 183/561 atomic regions from SNP 54735 to 55335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,898 DEBUG Processing 452/662 atomic regions from SNP 135476 to 136076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,022 DEBUG Processing 629/675 atomic regions from SNP 188548 to 189148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,042 DEBUG Processing 360/596 atomic regions from SNP 107893 to 108493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,087 DEBUG Processing 184/561 atomic regions from SNP 55035 to 55635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,148 DEBUG Processing 453/662 atomic regions from SNP 135776 to 136376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,268 DEBUG Processing 361/596 atomic regions from SNP 108193 to 108793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,273 DEBUG Processing 630/675 atomic regions from SNP 188848 to 189448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,312 DEBUG Processing 185/561 atomic regions from SNP 55335 to 55935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,370 DEBUG Processing 454/662 atomic regions from SNP 136076 to 136676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,493 DEBUG Processing 362/596 atomic regions from SNP 108493 to 109093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,511 DEBUG Processing 631/675 atomic regions from SNP 189148 to 189748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,543 DEBUG Processing 186/561 atomic regions from SNP 55635 to 56235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,603 DEBUG Processing 455/662 atomic regions from SNP 136376 to 136976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,690 DEBUG chr17 total SNP count: 160007 2025-01-31 09:58:16,690 DEBUG chr17 length: 94987271 2025-01-31 09:58:16,690 DEBUG ----------------------------------------- 2025-01-31 09:58:16,690 INFO Processing SNPs in chr17 2025-01-31 09:58:16,720 DEBUG Processing 363/596 atomic regions from SNP 108793 to 109393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,759 DEBUG Processing 632/675 atomic regions from SNP 189448 to 190048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,765 DEBUG Processing 187/561 atomic regions from SNP 55935 to 56535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,848 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 160007)] 2025-01-31 09:58:16,852 DEBUG Processing 456/662 atomic regions from SNP 136676 to 137276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,931 DEBUG Processing 364/596 atomic regions from SNP 109093 to 109693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,958 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:16,969 DEBUG Processing 188/561 atomic regions from SNP 56235 to 56835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,997 DEBUG Processing 633/675 atomic regions from SNP 189748 to 190348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,094 DEBUG Processing 457/662 atomic regions from SNP 136976 to 137576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,138 DEBUG Processing 365/596 atomic regions from SNP 109393 to 109993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,175 DEBUG Processing 189/561 atomic regions from SNP 56535 to 57135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,232 DEBUG Processing 634/675 atomic regions from SNP 190048 to 190648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,337 DEBUG Processing 458/662 atomic regions from SNP 137276 to 137876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,347 DEBUG Processing 366/596 atomic regions from SNP 109693 to 110293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,384 DEBUG Processing 190/561 atomic regions from SNP 56835 to 57435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,480 DEBUG Processing 635/675 atomic regions from SNP 190348 to 190948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,564 DEBUG Processing 367/596 atomic regions from SNP 109993 to 110593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,599 DEBUG Processing 459/662 atomic regions from SNP 137576 to 138176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,605 DEBUG Processing 191/561 atomic regions from SNP 57135 to 57735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,720 DEBUG Processing 636/675 atomic regions from SNP 190648 to 191248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,775 DEBUG Processing 368/596 atomic regions from SNP 110293 to 110893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,817 DEBUG Processing 192/561 atomic regions from SNP 57435 to 58035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,854 DEBUG Processing 460/662 atomic regions from SNP 137876 to 138476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,937 DEBUG Processing 637/675 atomic regions from SNP 190948 to 191548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,988 DEBUG Processing 369/596 atomic regions from SNP 110593 to 111193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,035 DEBUG Processing 193/561 atomic regions from SNP 57735 to 58335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,098 DEBUG Processing 461/662 atomic regions from SNP 138176 to 138776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,161 DEBUG Processing 638/675 atomic regions from SNP 191248 to 191848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,201 DEBUG Processing 370/596 atomic regions from SNP 110893 to 111493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,254 DEBUG Processing 194/561 atomic regions from SNP 58035 to 58635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,328 DEBUG Processing 462/662 atomic regions from SNP 138476 to 139076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,377 DEBUG Processing 639/675 atomic regions from SNP 191548 to 192148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,440 DEBUG Processing 371/596 atomic regions from SNP 111193 to 111793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,484 DEBUG Processing 195/561 atomic regions from SNP 58335 to 58935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,554 DEBUG Processing 463/662 atomic regions from SNP 138776 to 139376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,598 DEBUG Processing 640/675 atomic regions from SNP 191848 to 192448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,667 DEBUG Processing 372/596 atomic regions from SNP 111493 to 112093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,712 DEBUG Processing 196/561 atomic regions from SNP 58635 to 59235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,787 DEBUG Processing 464/662 atomic regions from SNP 139076 to 139676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,833 DEBUG Processing 641/675 atomic regions from SNP 192148 to 192748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,911 DEBUG Processing 373/596 atomic regions from SNP 111793 to 112393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,945 DEBUG Processing 197/561 atomic regions from SNP 58935 to 59535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,021 DEBUG Processing 465/662 atomic regions from SNP 139376 to 139976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,057 DEBUG Processing 642/675 atomic regions from SNP 192448 to 193048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,135 DEBUG Processing 374/596 atomic regions from SNP 112093 to 112693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,173 DEBUG Processing 198/561 atomic regions from SNP 59235 to 59835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,248 DEBUG Processing 466/662 atomic regions from SNP 139676 to 140276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,274 DEBUG Processing 643/675 atomic regions from SNP 192748 to 193348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,349 DEBUG Processing 375/596 atomic regions from SNP 112393 to 112993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,385 DEBUG Processing 199/561 atomic regions from SNP 59535 to 60135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,476 DEBUG Processing 467/662 atomic regions from SNP 139976 to 140576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,495 DEBUG Processing 644/675 atomic regions from SNP 193048 to 193648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,565 DEBUG Processing 376/596 atomic regions from SNP 112693 to 113293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,599 DEBUG Processing 200/561 atomic regions from SNP 59835 to 60435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,699 DEBUG Processing 468/662 atomic regions from SNP 140276 to 140876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,708 DEBUG Processing 645/675 atomic regions from SNP 193348 to 193948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,775 DEBUG Processing 377/596 atomic regions from SNP 112993 to 113593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,809 DEBUG Processing 201/561 atomic regions from SNP 60135 to 60735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,926 DEBUG Processing 646/675 atomic regions from SNP 193648 to 194248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,951 DEBUG Processing 469/662 atomic regions from SNP 140576 to 141176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,981 DEBUG Processing 378/596 atomic regions from SNP 113293 to 113893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,017 DEBUG Processing 202/561 atomic regions from SNP 60435 to 61035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,146 DEBUG Processing 647/675 atomic regions from SNP 193948 to 194548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,200 DEBUG Processing 379/596 atomic regions from SNP 113593 to 114193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,213 DEBUG Processing 470/662 atomic regions from SNP 140876 to 141476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,236 DEBUG Processing 203/561 atomic regions from SNP 60735 to 61335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,367 DEBUG Processing 648/675 atomic regions from SNP 194248 to 194848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,410 DEBUG Processing 380/596 atomic regions from SNP 113893 to 114493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,441 DEBUG Processing 204/561 atomic regions from SNP 61035 to 61635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,457 DEBUG Processing 471/662 atomic regions from SNP 141176 to 141776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,581 DEBUG Processing 649/675 atomic regions from SNP 194548 to 195148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,622 DEBUG Processing 381/596 atomic regions from SNP 114193 to 114793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,650 DEBUG Processing 205/561 atomic regions from SNP 61335 to 61935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,703 DEBUG Processing 472/662 atomic regions from SNP 141476 to 142076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,804 DEBUG Processing 650/675 atomic regions from SNP 194848 to 195448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,839 DEBUG Processing 382/596 atomic regions from SNP 114493 to 115093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,883 DEBUG Processing 206/561 atomic regions from SNP 61635 to 62235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,963 DEBUG Processing 473/662 atomic regions from SNP 141776 to 142376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,033 DEBUG Processing 651/675 atomic regions from SNP 195148 to 195748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,050 DEBUG Processing 383/596 atomic regions from SNP 114793 to 115393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,087 DEBUG Processing 207/561 atomic regions from SNP 61935 to 62535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,185 DEBUG Processing 474/662 atomic regions from SNP 142076 to 142676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,262 DEBUG Processing 384/596 atomic regions from SNP 115093 to 115693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,263 DEBUG Processing 652/675 atomic regions from SNP 195448 to 196048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,321 DEBUG Processing 208/561 atomic regions from SNP 62235 to 62835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,409 DEBUG Processing 475/662 atomic regions from SNP 142376 to 142976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,476 DEBUG Processing 385/596 atomic regions from SNP 115393 to 115993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,494 DEBUG Processing 653/675 atomic regions from SNP 195748 to 196348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,555 DEBUG Processing 209/561 atomic regions from SNP 62535 to 63135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,629 DEBUG Processing 476/662 atomic regions from SNP 142676 to 143276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,690 DEBUG Processing 386/596 atomic regions from SNP 115693 to 116293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,717 DEBUG Processing 654/675 atomic regions from SNP 196048 to 196648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,792 DEBUG Processing 210/561 atomic regions from SNP 62835 to 63435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,844 DEBUG Processing 477/662 atomic regions from SNP 142976 to 143576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,897 DEBUG Processing 387/596 atomic regions from SNP 115993 to 116593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,934 DEBUG Processing 655/675 atomic regions from SNP 196348 to 196948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,023 DEBUG Processing 211/561 atomic regions from SNP 63135 to 63735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,060 DEBUG Processing 478/662 atomic regions from SNP 143276 to 143876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,106 DEBUG Processing 388/596 atomic regions from SNP 116293 to 116893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,154 DEBUG Processing 656/675 atomic regions from SNP 196648 to 197248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,249 DEBUG Processing 212/561 atomic regions from SNP 63435 to 64035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,274 DEBUG Processing 479/662 atomic regions from SNP 143576 to 144176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,318 DEBUG Processing 389/596 atomic regions from SNP 116593 to 117193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,383 DEBUG Processing 657/675 atomic regions from SNP 196948 to 197548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,495 DEBUG Processing 213/561 atomic regions from SNP 63735 to 64335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,496 DEBUG Processing 480/662 atomic regions from SNP 143876 to 144476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,545 DEBUG Processing 390/596 atomic regions from SNP 116893 to 117493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,609 DEBUG Processing 658/675 atomic regions from SNP 197248 to 197848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,720 DEBUG Processing 481/662 atomic regions from SNP 144176 to 144776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,730 DEBUG Processing 214/561 atomic regions from SNP 64035 to 64635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,756 DEBUG Processing 391/596 atomic regions from SNP 117193 to 117793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,834 DEBUG Processing 659/675 atomic regions from SNP 197548 to 198148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,948 DEBUG Processing 482/662 atomic regions from SNP 144476 to 145076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,967 DEBUG Processing 215/561 atomic regions from SNP 64335 to 64935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,976 DEBUG Processing 392/596 atomic regions from SNP 117493 to 118093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,053 DEBUG Processing 660/675 atomic regions from SNP 197848 to 198448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,175 DEBUG Processing 483/662 atomic regions from SNP 144776 to 145376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,183 DEBUG Processing 216/561 atomic regions from SNP 64635 to 65235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,198 DEBUG Processing 393/596 atomic regions from SNP 117793 to 118393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,273 DEBUG Processing 661/675 atomic regions from SNP 198148 to 198748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,396 DEBUG Processing 217/561 atomic regions from SNP 64935 to 65535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,403 DEBUG Processing 484/662 atomic regions from SNP 145076 to 145676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,420 DEBUG Processing 394/596 atomic regions from SNP 118093 to 118693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,493 DEBUG Processing 662/675 atomic regions from SNP 198448 to 199048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,619 DEBUG Processing 218/561 atomic regions from SNP 65235 to 65835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,639 DEBUG Processing 485/662 atomic regions from SNP 145376 to 145976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,649 DEBUG Processing 395/596 atomic regions from SNP 118393 to 118993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,728 DEBUG Processing 663/675 atomic regions from SNP 198748 to 199348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,828 DEBUG Processing 219/561 atomic regions from SNP 65535 to 66135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,850 DEBUG Processing 486/662 atomic regions from SNP 145676 to 146276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,867 DEBUG Processing 396/596 atomic regions from SNP 118693 to 119293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,951 DEBUG Processing 664/675 atomic regions from SNP 199048 to 199648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,036 DEBUG Processing 220/561 atomic regions from SNP 65835 to 66435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,063 DEBUG Processing 487/662 atomic regions from SNP 145976 to 146576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,085 DEBUG Processing 397/596 atomic regions from SNP 118993 to 119593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,173 DEBUG Processing 665/675 atomic regions from SNP 199348 to 199948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,248 DEBUG Processing 221/561 atomic regions from SNP 66135 to 66735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,283 DEBUG Processing 488/662 atomic regions from SNP 146276 to 146876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,306 DEBUG Processing 398/596 atomic regions from SNP 119293 to 119893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,398 DEBUG Processing 666/675 atomic regions from SNP 199648 to 200248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,457 DEBUG Processing 222/561 atomic regions from SNP 66435 to 67035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,501 DEBUG Processing 489/662 atomic regions from SNP 146576 to 147176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,522 DEBUG Processing 399/596 atomic regions from SNP 119593 to 120193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,617 DEBUG Processing 667/675 atomic regions from SNP 199948 to 200548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,666 DEBUG Processing 223/561 atomic regions from SNP 66735 to 67335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,727 DEBUG Processing 490/662 atomic regions from SNP 146876 to 147476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,739 DEBUG Processing 400/596 atomic regions from SNP 119893 to 120493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,849 DEBUG Processing 668/675 atomic regions from SNP 200248 to 200848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,882 DEBUG Processing 224/561 atomic regions from SNP 67035 to 67635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,954 DEBUG Processing 491/662 atomic regions from SNP 147176 to 147776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,966 DEBUG Processing 401/596 atomic regions from SNP 120193 to 120793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,073 DEBUG Processing 669/675 atomic regions from SNP 200548 to 201148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,097 DEBUG Processing 225/561 atomic regions from SNP 67335 to 67935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,166 DEBUG Processing 492/662 atomic regions from SNP 147476 to 148076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,201 DEBUG Processing 402/596 atomic regions from SNP 120493 to 121093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,294 DEBUG Processing 670/675 atomic regions from SNP 200848 to 201448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,299 DEBUG Processing 226/561 atomic regions from SNP 67635 to 68235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,379 DEBUG Processing 493/662 atomic regions from SNP 147776 to 148376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,417 DEBUG Processing 403/596 atomic regions from SNP 120793 to 121393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,502 DEBUG Processing 227/561 atomic regions from SNP 67935 to 68535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,516 DEBUG Processing 671/675 atomic regions from SNP 201148 to 201748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,594 DEBUG Processing 494/662 atomic regions from SNP 148076 to 148676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,627 DEBUG Processing 404/596 atomic regions from SNP 121093 to 121693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,716 DEBUG Processing 228/561 atomic regions from SNP 68235 to 68835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,751 DEBUG Processing 672/675 atomic regions from SNP 201448 to 202048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,849 DEBUG Processing 405/596 atomic regions from SNP 121393 to 121993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,855 DEBUG Processing 495/662 atomic regions from SNP 148376 to 148976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,926 DEBUG Processing 229/561 atomic regions from SNP 68535 to 69135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,971 DEBUG Processing 673/675 atomic regions from SNP 201748 to 202348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,066 DEBUG Processing 406/596 atomic regions from SNP 121693 to 122293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,091 DEBUG Processing 496/662 atomic regions from SNP 148676 to 149276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,138 DEBUG Processing 230/561 atomic regions from SNP 68835 to 69435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,213 DEBUG Processing 674/675 atomic regions from SNP 202048 to 202648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,298 DEBUG Processing 407/596 atomic regions from SNP 121993 to 122593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,317 DEBUG Processing 497/662 atomic regions from SNP 148976 to 149576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,352 DEBUG Processing 231/561 atomic regions from SNP 69135 to 69735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,466 DEBUG Processing 675/675 atomic regions from SNP 202348 to 202948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,539 DEBUG Processing 498/662 atomic regions from SNP 149276 to 149876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,553 DEBUG Processing 408/596 atomic regions from SNP 122293 to 122893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,563 DEBUG Processing 232/561 atomic regions from SNP 69435 to 70035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,643 DEBUG Unique SNPs positions in subchromosome 1: 202949 2025-01-31 09:58:26,762 DEBUG Processing 499/662 atomic regions from SNP 149576 to 150176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,770 DEBUG Processing 233/561 atomic regions from SNP 69735 to 70335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,789 DEBUG Processing 409/596 atomic regions from SNP 122593 to 123193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,976 DEBUG Processing 234/561 atomic regions from SNP 70035 to 70635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,983 DEBUG Processing 500/662 atomic regions from SNP 149876 to 150476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,001 DEBUG Processing 410/596 atomic regions from SNP 122893 to 123493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,195 DEBUG Processing 235/561 atomic regions from SNP 70335 to 70935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,206 DEBUG Processing 501/662 atomic regions from SNP 150176 to 150776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,249 DEBUG Processing 411/596 atomic regions from SNP 123193 to 123793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,401 DEBUG Processing 236/561 atomic regions from SNP 70635 to 71235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,424 DEBUG Processing 502/662 atomic regions from SNP 150476 to 151076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,499 DEBUG Processing 412/596 atomic regions from SNP 123493 to 124093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,601 DEBUG Processing 237/561 atomic regions from SNP 70935 to 71535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,640 DEBUG Processing 503/662 atomic regions from SNP 150776 to 151376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,742 DEBUG Processing 413/596 atomic regions from SNP 123793 to 124393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,801 DEBUG Processing 238/561 atomic regions from SNP 71235 to 71835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,862 DEBUG Processing 504/662 atomic regions from SNP 151076 to 151676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,949 DEBUG Processing 414/596 atomic regions from SNP 124093 to 124693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,007 DEBUG Processing 239/561 atomic regions from SNP 71535 to 72135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,082 DEBUG Processing 505/662 atomic regions from SNP 151376 to 151976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,164 DEBUG Processing 415/596 atomic regions from SNP 124393 to 124993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,214 DEBUG Processing 240/561 atomic regions from SNP 71835 to 72435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,303 DEBUG Processing 506/662 atomic regions from SNP 151676 to 152276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,373 DEBUG Processing 416/596 atomic regions from SNP 124693 to 125293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,413 DEBUG Processing 241/561 atomic regions from SNP 72135 to 72735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,523 DEBUG Processing 507/662 atomic regions from SNP 151976 to 152576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,586 DEBUG Processing 417/596 atomic regions from SNP 124993 to 125593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,625 DEBUG Processing 242/561 atomic regions from SNP 72435 to 73035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,742 DEBUG Processing 508/662 atomic regions from SNP 152276 to 152876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,817 DEBUG Processing 418/596 atomic regions from SNP 125293 to 125893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,829 DEBUG Processing 243/561 atomic regions from SNP 72735 to 73335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,968 DEBUG Processing 509/662 atomic regions from SNP 152576 to 153176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,038 DEBUG Processing 244/561 atomic regions from SNP 73035 to 73635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,046 DEBUG Processing 419/596 atomic regions from SNP 125593 to 126193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,192 DEBUG Processing 510/662 atomic regions from SNP 152876 to 153476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,246 DEBUG Processing 245/561 atomic regions from SNP 73335 to 73935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,259 DEBUG Processing 420/596 atomic regions from SNP 125893 to 126493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,411 DEBUG Processing 511/662 atomic regions from SNP 153176 to 153776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,455 DEBUG Processing 246/561 atomic regions from SNP 73635 to 74235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,474 DEBUG Processing 421/596 atomic regions from SNP 126193 to 126793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,628 DEBUG Processing 512/662 atomic regions from SNP 153476 to 154076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,671 DEBUG Processing 247/561 atomic regions from SNP 73935 to 74535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,682 DEBUG Processing 422/596 atomic regions from SNP 126493 to 127093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,852 DEBUG Processing 513/662 atomic regions from SNP 153776 to 154376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,883 DEBUG Processing 248/561 atomic regions from SNP 74235 to 74835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,901 DEBUG Processing 423/596 atomic regions from SNP 126793 to 127393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,083 DEBUG Processing 514/662 atomic regions from SNP 154076 to 154676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,096 DEBUG Processing 249/561 atomic regions from SNP 74535 to 75135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,150 DEBUG Processing 424/596 atomic regions from SNP 127093 to 127693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,307 DEBUG Processing 250/561 atomic regions from SNP 74835 to 75435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,314 DEBUG Processing 515/662 atomic regions from SNP 154376 to 154976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,396 DEBUG Processing 425/596 atomic regions from SNP 127393 to 127993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,506 DEBUG Processing 251/561 atomic regions from SNP 75135 to 75735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,529 DEBUG Processing 516/662 atomic regions from SNP 154676 to 155276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,640 DEBUG Processing 426/596 atomic regions from SNP 127693 to 128293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,712 DEBUG Processing 252/561 atomic regions from SNP 75435 to 76035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,748 DEBUG Processing 517/662 atomic regions from SNP 154976 to 155576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,891 DEBUG Processing 427/596 atomic regions from SNP 127993 to 128593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,925 DEBUG Processing 253/561 atomic regions from SNP 75735 to 76335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,972 DEBUG Processing 518/662 atomic regions from SNP 155276 to 155876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,121 DEBUG Processing 254/561 atomic regions from SNP 76035 to 76635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,129 DEBUG Processing 428/596 atomic regions from SNP 128293 to 128893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,193 DEBUG Processing 519/662 atomic regions from SNP 155576 to 156176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,320 DEBUG Processing 255/561 atomic regions from SNP 76335 to 76935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,372 DEBUG Processing 429/596 atomic regions from SNP 128593 to 129193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,415 DEBUG Processing 520/662 atomic regions from SNP 155876 to 156476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,524 DEBUG Processing 256/561 atomic regions from SNP 76635 to 77235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,633 DEBUG Processing 430/596 atomic regions from SNP 128893 to 129493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,667 DEBUG Processing 521/662 atomic regions from SNP 156176 to 156776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,728 DEBUG Processing 257/561 atomic regions from SNP 76935 to 77535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,891 DEBUG Processing 431/596 atomic regions from SNP 129193 to 129793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,896 DEBUG Processing 522/662 atomic regions from SNP 156476 to 157076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,935 DEBUG Processing 258/561 atomic regions from SNP 77235 to 77835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,126 DEBUG Processing 523/662 atomic regions from SNP 156776 to 157376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,144 DEBUG Processing 432/596 atomic regions from SNP 129493 to 130093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,149 DEBUG Processing 259/561 atomic regions from SNP 77535 to 78135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,349 DEBUG Processing 524/662 atomic regions from SNP 157076 to 157676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,358 DEBUG Processing 260/561 atomic regions from SNP 77835 to 78435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,374 DEBUG Processing 433/596 atomic regions from SNP 129793 to 130393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,563 DEBUG Processing 261/561 atomic regions from SNP 78135 to 78735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,569 DEBUG Processing 525/662 atomic regions from SNP 157376 to 157976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,628 DEBUG Processing 434/596 atomic regions from SNP 130093 to 130693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,766 DEBUG Processing 262/561 atomic regions from SNP 78435 to 79035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,793 DEBUG Processing 526/662 atomic regions from SNP 157676 to 158276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,855 DEBUG Processing 435/596 atomic regions from SNP 130393 to 130993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,969 DEBUG Processing 263/561 atomic regions from SNP 78735 to 79335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,016 DEBUG Processing 527/662 atomic regions from SNP 157976 to 158576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,090 DEBUG Processing 436/596 atomic regions from SNP 130693 to 131293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,168 DEBUG Processing 264/561 atomic regions from SNP 79035 to 79635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,240 DEBUG Processing 528/662 atomic regions from SNP 158276 to 158876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,339 DEBUG Processing 437/596 atomic regions from SNP 130993 to 131593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,377 DEBUG Processing 265/561 atomic regions from SNP 79335 to 79935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,474 DEBUG Processing 529/662 atomic regions from SNP 158576 to 159176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,583 DEBUG Processing 266/561 atomic regions from SNP 79635 to 80235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,585 DEBUG Processing 438/596 atomic regions from SNP 131293 to 131893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,700 DEBUG Processing 530/662 atomic regions from SNP 158876 to 159476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,787 DEBUG Processing 267/561 atomic regions from SNP 79935 to 80535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,830 DEBUG Processing 439/596 atomic regions from SNP 131593 to 132193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,919 DEBUG Processing 531/662 atomic regions from SNP 159176 to 159776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,992 DEBUG Processing 268/561 atomic regions from SNP 80235 to 80835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,090 DEBUG Processing 440/596 atomic regions from SNP 131893 to 132493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,151 DEBUG Processing 532/662 atomic regions from SNP 159476 to 160076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,194 DEBUG Processing 269/561 atomic regions from SNP 80535 to 81135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,343 DEBUG Processing 441/596 atomic regions from SNP 132193 to 132793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,376 DEBUG Processing 533/662 atomic regions from SNP 159776 to 160376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,398 DEBUG Processing 270/561 atomic regions from SNP 80835 to 81435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,593 DEBUG Processing 442/596 atomic regions from SNP 132493 to 133093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,601 DEBUG Processing 271/561 atomic regions from SNP 81135 to 81735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,602 DEBUG Processing 534/662 atomic regions from SNP 160076 to 160676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,801 DEBUG Processing 272/561 atomic regions from SNP 81435 to 82035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,828 DEBUG Processing 535/662 atomic regions from SNP 160376 to 160976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,831 DEBUG Processing 443/596 atomic regions from SNP 132793 to 133393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,994 DEBUG Processing 273/561 atomic regions from SNP 81735 to 82335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,072 DEBUG Processing 444/596 atomic regions from SNP 133093 to 133693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,077 DEBUG Processing 536/662 atomic regions from SNP 160676 to 161276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,188 DEBUG Processing 274/561 atomic regions from SNP 82035 to 82635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,302 DEBUG Processing 537/662 atomic regions from SNP 160976 to 161576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,313 DEBUG Processing 445/596 atomic regions from SNP 133393 to 133993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,381 DEBUG Processing 275/561 atomic regions from SNP 82335 to 82935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,525 DEBUG Processing 538/662 atomic regions from SNP 161276 to 161876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,550 DEBUG Processing 446/596 atomic regions from SNP 133693 to 134293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,573 DEBUG Processing 276/561 atomic regions from SNP 82635 to 83235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,753 DEBUG Processing 539/662 atomic regions from SNP 161576 to 162176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,771 DEBUG Processing 277/561 atomic regions from SNP 82935 to 83535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,789 DEBUG Processing 447/596 atomic regions from SNP 133993 to 134593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,988 DEBUG Processing 278/561 atomic regions from SNP 83235 to 83835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,002 DEBUG Processing 540/662 atomic regions from SNP 161876 to 162476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,028 DEBUG Processing 448/596 atomic regions from SNP 134293 to 134893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,205 DEBUG Processing 279/561 atomic regions from SNP 83535 to 84135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,206 DEBUG Segmenting atomic regions: 2025-01-31 09:58:36,244 DEBUG Processing 541/662 atomic regions from SNP 162176 to 162776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,277 DEBUG Processing 1/532 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,279 DEBUG Processing 449/596 atomic regions from SNP 134593 to 135193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,428 DEBUG Processing 280/561 atomic regions from SNP 83835 to 84435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,474 DEBUG Processing 542/662 atomic regions from SNP 162476 to 163076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,489 DEBUG Processing 2/532 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,528 DEBUG Processing 450/596 atomic regions from SNP 134893 to 135493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,626 DEBUG Processing 281/561 atomic regions from SNP 84135 to 84735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,692 DEBUG Processing 3/532 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,706 DEBUG Processing 543/662 atomic regions from SNP 162776 to 163376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,724 DEBUG Subchromosome time: 222.3328381619649, subchromosome SNPs: 211867 2025-01-31 09:58:36,724 DEBUG Estimated BADs: [15.79, 3.16, 0.79, 0.26, 1.58, 0.32, 1.58, 0.32, 1.58, 0.79, 0.32, 0.79, 11.06, 1.58, 3.16, 1.58, 0.53, 1.58, 3.16, 1.58, 9.48, 3.16, 1.58, 0.26, 1.58, 14.21, 3.16, 1.58, 3.16, 0.53, 3.16, 0.79, 3.16, 1.58, 0.39, 0.79, 4.74, 3.16] SNP counts: [149, 6459, 4048, 3285, 2394, 11123, 9020, 7477, 10375, 2536, 10482, 11193, 191, 4633, 1394, 5998, 2088, 3735, 6482, 11933, 2012, 1921, 3997, 1103, 1371, 121, 8750, 8994, 9283, 7950, 10063, 1260, 15264, 3966, 3201, 4944, 3772, 8900] SNP IDs counts: [149, 6459, 4048, 3285, 2394, 11123, 9020, 7477, 10375, 2536, 10482, 11193, 191, 4633, 1394, 5998, 2088, 3735, 6482, 11933, 2012, 1921, 3997, 1103, 1371, 121, 8750, 8994, 9283, 7950, 10063, 1260, 15264, 3966, 3201, 4944, 3772, 8900] Critical gap: 593215bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.73Mbp, 9.14Mbp, 11.13Mbp, 12.52Mbp, 19.31Mbp, 24.35Mbp, 28.87Mbp, 34.85Mbp, 36.23Mbp, 42.37Mbp, 48.77Mbp, 48.88Mbp, 51.57Mbp, 52.34Mbp, 55.60Mbp, 56.81Mbp, 58.90Mbp, 62.46Mbp, 68.97Mbp, 70.03Mbp, 71.09Mbp, 73.30Mbp, 74.03Mbp, 74.83Mbp, 74.90Mbp, 79.61Mbp, 84.57Mbp, 89.60Mbp, 94.13Mbp, 99.51Mbp, 100.25Mbp, 108.50Mbp, 110.67Mbp, 112.46Mbp, 115.15Mbp, 117.19Mbp, 122.08Mbp] 2025-01-31 09:58:36,725 DEBUG chr11 time: 222.33358419302385 s 2025-01-31 09:58:36,765 DEBUG Processing 451/596 atomic regions from SNP 135193 to 135793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,824 DEBUG Processing 282/561 atomic regions from SNP 84435 to 85035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,876 DEBUG chr11: Fitting background model for 38 segments 2025-01-31 09:58:36,892 DEBUG Processing 4/532 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,942 DEBUG Processing 544/662 atomic regions from SNP 163076 to 163676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,004 DEBUG Processing 452/596 atomic regions from SNP 135493 to 136093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,026 DEBUG Processing 283/561 atomic regions from SNP 84735 to 85335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,090 DEBUG Processing 5/532 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,192 DEBUG Processing 545/662 atomic regions from SNP 163376 to 163976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,233 DEBUG Processing 284/561 atomic regions from SNP 85035 to 85635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,244 DEBUG Processing 453/596 atomic regions from SNP 135793 to 136393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,288 DEBUG Processing 6/532 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,437 DEBUG Processing 285/561 atomic regions from SNP 85335 to 85935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,442 DEBUG Processing 546/662 atomic regions from SNP 163676 to 164276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,488 DEBUG Processing 454/596 atomic regions from SNP 136093 to 136693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,498 DEBUG Processing 7/532 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,654 DEBUG Processing 286/561 atomic regions from SNP 85635 to 86235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,697 DEBUG Processing 547/662 atomic regions from SNP 163976 to 164576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,720 DEBUG Processing 8/532 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,744 DEBUG Processing 455/596 atomic regions from SNP 136393 to 136993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,851 DEBUG Processing 287/561 atomic regions from SNP 85935 to 86535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,908 DEBUG Subchromosome time: 196.72811621101573, subchromosome SNPs: 202949 2025-01-31 09:58:37,909 DEBUG Estimated BADs: [1.34, 0.67, 1.34, 0.67, 4.03, 12.09, 0.67, 13.43, 2.69, 0.45, 1.34, 4.03, 1.34, 4.03, 1.34, 2.69, 0.67, 2.69, 0.67, 5.37, 1.34, 2.69, 0.67, 9.40, 0.45, 8.06, 1.34, 6.72, 0.67, 12.09, 0.45, 1.34, 2.69, 1.34, 2.69, 1.34, 0.67, 2.69] SNP counts: [2271, 7165, 9940, 11309, 997, 552, 1771, 878, 3137, 4201, 37215, 1508, 8911, 2181, 4542, 5378, 2760, 3233, 5242, 154, 6710, 2940, 5632, 130, 4545, 98, 1258, 171, 3490, 87, 12166, 11071, 8671, 17928, 1997, 4700, 7198, 812] SNP IDs counts: [2271, 7165, 9940, 11309, 997, 552, 1771, 878, 3137, 4201, 37215, 1508, 8911, 2181, 4542, 5378, 2760, 3233, 5242, 154, 6710, 2940, 5632, 130, 4545, 98, 1258, 171, 3490, 87, 12166, 11071, 8671, 17928, 1997, 4700, 7198, 812] Critical gap: 598118bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.40Mbp, 8.62Mbp, 14.65Mbp, 21.16Mbp, 21.71Mbp, 22.05Mbp, 23.28Mbp, 23.77Mbp, 25.49Mbp, 27.96Mbp, 48.44Mbp, 49.22Mbp, 54.44Mbp, 55.60Mbp, 58.00Mbp, 60.88Mbp, 63.01Mbp, 64.79Mbp, 69.48Mbp, 69.56Mbp, 73.25Mbp, 74.87Mbp, 78.16Mbp, 78.23Mbp, 80.88Mbp, 80.93Mbp, 81.63Mbp, 81.71Mbp, 83.69Mbp, 83.74Mbp, 90.89Mbp, 96.93Mbp, 101.69Mbp, 111.68Mbp, 112.74Mbp, 115.29Mbp, 119.41Mbp, 120.42Mbp] 2025-01-31 09:58:37,909 DEBUG chr13 time: 196.7290714700939 s 2025-01-31 09:58:37,930 DEBUG Processing 9/532 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,949 DEBUG Processing 548/662 atomic regions from SNP 164276 to 164876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,984 DEBUG Processing 456/596 atomic regions from SNP 136693 to 137293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,040 DEBUG chr13: Fitting background model for 38 segments 2025-01-31 09:58:38,056 DEBUG Processing 288/561 atomic regions from SNP 86235 to 86835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,135 DEBUG Processing 10/532 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,203 DEBUG Processing 549/662 atomic regions from SNP 164576 to 165176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,218 DEBUG Processing 457/596 atomic regions from SNP 136993 to 137593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,251 DEBUG Processing 289/561 atomic regions from SNP 86535 to 87135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,336 DEBUG Processing 11/532 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,444 DEBUG Processing 458/596 atomic regions from SNP 137293 to 137893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,451 DEBUG Processing 290/561 atomic regions from SNP 86835 to 87435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,466 DEBUG Processing 550/662 atomic regions from SNP 164876 to 165476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,534 DEBUG Processing 12/532 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,652 DEBUG Processing 291/561 atomic regions from SNP 87135 to 87735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,681 DEBUG Processing 459/596 atomic regions from SNP 137593 to 138193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,712 DEBUG Processing 551/662 atomic regions from SNP 165176 to 165776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,745 DEBUG Processing 13/532 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,853 DEBUG Processing 292/561 atomic regions from SNP 87435 to 88035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,922 DEBUG Processing 460/596 atomic regions from SNP 137893 to 138493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,937 DEBUG Processing 552/662 atomic regions from SNP 165476 to 166076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,954 DEBUG Processing 14/532 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,047 DEBUG Processing 293/561 atomic regions from SNP 87735 to 88335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,165 DEBUG Processing 461/596 atomic regions from SNP 138193 to 138793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,176 DEBUG Processing 15/532 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,177 DEBUG Processing 553/662 atomic regions from SNP 165776 to 166376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,250 DEBUG Processing 294/561 atomic regions from SNP 88035 to 88635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,397 DEBUG Processing 16/532 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,403 DEBUG Processing 462/596 atomic regions from SNP 138493 to 139093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,407 DEBUG Processing 554/662 atomic regions from SNP 166076 to 166676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,443 DEBUG Processing 295/561 atomic regions from SNP 88335 to 88935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,611 DEBUG Processing 17/532 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,638 DEBUG Processing 296/561 atomic regions from SNP 88635 to 89235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,649 DEBUG Processing 463/596 atomic regions from SNP 138793 to 139393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,659 DEBUG Processing 555/662 atomic regions from SNP 166376 to 166976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,835 DEBUG Processing 297/561 atomic regions from SNP 88935 to 89535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,836 DEBUG Processing 18/532 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,887 DEBUG Processing 464/596 atomic regions from SNP 139093 to 139693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,912 DEBUG Processing 556/662 atomic regions from SNP 166676 to 167276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,026 DEBUG Processing 298/561 atomic regions from SNP 89235 to 89835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,058 DEBUG Processing 19/532 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,126 DEBUG Processing 465/596 atomic regions from SNP 139393 to 139993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,142 DEBUG Processing 557/662 atomic regions from SNP 166976 to 167576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,218 DEBUG Processing 299/561 atomic regions from SNP 89535 to 90135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,271 DEBUG Processing 20/532 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,344 DEBUG Processing 466/596 atomic regions from SNP 139693 to 140293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,390 DEBUG Processing 558/662 atomic regions from SNP 167276 to 167876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,411 DEBUG Processing 300/561 atomic regions from SNP 89835 to 90435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,484 DEBUG Processing 21/532 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,550 DEBUG Processing 467/596 atomic regions from SNP 139993 to 140593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,609 DEBUG Processing 301/561 atomic regions from SNP 90135 to 90735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,646 DEBUG Processing 559/662 atomic regions from SNP 167576 to 168176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,705 DEBUG Processing 22/532 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,767 DEBUG Processing 468/596 atomic regions from SNP 140293 to 140893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,805 DEBUG Processing 302/561 atomic regions from SNP 90435 to 91035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,901 DEBUG Processing 560/662 atomic regions from SNP 167876 to 168476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,906 DEBUG Processing 23/532 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,994 DEBUG Processing 303/561 atomic regions from SNP 90735 to 91335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,997 DEBUG Processing 469/596 atomic regions from SNP 140593 to 141193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,106 DEBUG Processing 24/532 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,153 DEBUG Processing 561/662 atomic regions from SNP 168176 to 168776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,189 DEBUG Processing 304/561 atomic regions from SNP 91035 to 91635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,231 DEBUG Processing 470/596 atomic regions from SNP 140893 to 141493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,305 DEBUG Processing 25/532 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,381 DEBUG Processing 562/662 atomic regions from SNP 168476 to 169076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,384 DEBUG Processing 305/561 atomic regions from SNP 91335 to 91935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,460 DEBUG Processing 471/596 atomic regions from SNP 141193 to 141793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,498 DEBUG Processing 26/532 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,571 DEBUG Processing 306/561 atomic regions from SNP 91635 to 92235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,600 DEBUG Processing 563/662 atomic regions from SNP 168776 to 169376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,692 DEBUG Processing 472/596 atomic regions from SNP 141493 to 142093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,694 DEBUG Processing 27/532 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,757 DEBUG Processing 307/561 atomic regions from SNP 91935 to 92535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,843 DEBUG Processing 564/662 atomic regions from SNP 169076 to 169676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,906 DEBUG Processing 28/532 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,916 DEBUG Processing 473/596 atomic regions from SNP 141793 to 142393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,948 DEBUG Processing 308/561 atomic regions from SNP 92235 to 92835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,088 DEBUG Processing 565/662 atomic regions from SNP 169376 to 169976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,105 DEBUG Processing 29/532 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,121 DEBUG Processing 474/596 atomic regions from SNP 142093 to 142693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,143 DEBUG Processing 309/561 atomic regions from SNP 92535 to 93135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,313 DEBUG Processing 30/532 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,315 DEBUG Processing 566/662 atomic regions from SNP 169676 to 170276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,330 DEBUG Processing 475/596 atomic regions from SNP 142393 to 142993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,340 DEBUG Processing 310/561 atomic regions from SNP 92835 to 93435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,516 DEBUG Processing 31/532 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,545 DEBUG Processing 311/561 atomic regions from SNP 93135 to 93735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,550 DEBUG Processing 567/662 atomic regions from SNP 169976 to 170576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,555 DEBUG Processing 476/596 atomic regions from SNP 142693 to 143293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,716 DEBUG Processing 32/532 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,748 DEBUG Processing 312/561 atomic regions from SNP 93435 to 94035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,786 DEBUG Processing 568/662 atomic regions from SNP 170276 to 170876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,791 DEBUG Processing 477/596 atomic regions from SNP 142993 to 143593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,911 DEBUG Processing 33/532 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,941 DEBUG Processing 313/561 atomic regions from SNP 93735 to 94335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,016 DEBUG Processing 569/662 atomic regions from SNP 170576 to 171176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,020 DEBUG Processing 478/596 atomic regions from SNP 143293 to 143893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,110 DEBUG Processing 34/532 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,156 DEBUG Processing 314/561 atomic regions from SNP 94035 to 94635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,247 DEBUG Processing 570/662 atomic regions from SNP 170876 to 171476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,252 DEBUG Processing 479/596 atomic regions from SNP 143593 to 144193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,309 DEBUG Processing 35/532 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,391 DEBUG Processing 315/561 atomic regions from SNP 94335 to 94935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,483 DEBUG Processing 571/662 atomic regions from SNP 171176 to 171776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,484 DEBUG Processing 480/596 atomic regions from SNP 143893 to 144493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,514 DEBUG Processing 36/532 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,604 DEBUG Processing 316/561 atomic regions from SNP 94635 to 95235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,713 DEBUG Processing 572/662 atomic regions from SNP 171476 to 172076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,716 DEBUG Processing 37/532 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,721 DEBUG Processing 481/596 atomic regions from SNP 144193 to 144793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,794 DEBUG Processing 317/561 atomic regions from SNP 94935 to 95535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,912 DEBUG Processing 38/532 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,931 DEBUG Processing 482/596 atomic regions from SNP 144493 to 145093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,950 DEBUG Processing 573/662 atomic regions from SNP 171776 to 172376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,983 DEBUG Processing 318/561 atomic regions from SNP 95235 to 95835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,107 DEBUG Processing 39/532 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,154 DEBUG Processing 483/596 atomic regions from SNP 144793 to 145393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,179 DEBUG Processing 319/561 atomic regions from SNP 95535 to 96135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,203 DEBUG Processing 574/662 atomic regions from SNP 172076 to 172676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,312 DEBUG Processing 40/532 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,380 DEBUG Processing 484/596 atomic regions from SNP 145093 to 145693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,385 DEBUG Processing 320/561 atomic regions from SNP 95835 to 96435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,452 DEBUG Processing 575/662 atomic regions from SNP 172376 to 172976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,509 DEBUG Processing 41/532 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,578 DEBUG Processing 321/561 atomic regions from SNP 96135 to 96735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,616 DEBUG Processing 485/596 atomic regions from SNP 145393 to 145993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,677 DEBUG Processing 576/662 atomic regions from SNP 172676 to 173276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,706 DEBUG Processing 42/532 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,770 DEBUG Processing 322/561 atomic regions from SNP 96435 to 97035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,844 DEBUG Processing 486/596 atomic regions from SNP 145693 to 146293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,906 DEBUG Processing 43/532 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,917 DEBUG Processing 577/662 atomic regions from SNP 172976 to 173576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,967 DEBUG Processing 323/561 atomic regions from SNP 96735 to 97335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,084 DEBUG Processing 487/596 atomic regions from SNP 145993 to 146593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,123 DEBUG Processing 44/532 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,165 DEBUG Processing 324/561 atomic regions from SNP 97035 to 97635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,173 DEBUG Processing 578/662 atomic regions from SNP 173276 to 173876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,297 DEBUG Processing 488/596 atomic regions from SNP 146293 to 146893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,324 DEBUG Processing 45/532 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,361 DEBUG Processing 325/561 atomic regions from SNP 97335 to 97935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,421 DEBUG Processing 579/662 atomic regions from SNP 173576 to 174176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,511 DEBUG Processing 489/596 atomic regions from SNP 146593 to 147193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,522 DEBUG Processing 46/532 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,561 DEBUG Processing 326/561 atomic regions from SNP 97635 to 98235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,675 DEBUG Processing 580/662 atomic regions from SNP 173876 to 174476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,719 DEBUG Processing 47/532 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,720 DEBUG Processing 490/596 atomic regions from SNP 146893 to 147493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,760 DEBUG Processing 327/561 atomic regions from SNP 97935 to 98535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,913 DEBUG Processing 581/662 atomic regions from SNP 174176 to 174776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,921 DEBUG Processing 48/532 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,928 DEBUG Processing 491/596 atomic regions from SNP 147193 to 147793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,960 DEBUG Processing 328/561 atomic regions from SNP 98235 to 98835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,123 DEBUG Processing 49/532 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,132 DEBUG Processing 492/596 atomic regions from SNP 147493 to 148093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,144 DEBUG Processing 582/662 atomic regions from SNP 174476 to 175076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,178 DEBUG Processing 329/561 atomic regions from SNP 98535 to 99135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,330 DEBUG Processing 50/532 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,343 DEBUG Processing 493/596 atomic regions from SNP 147793 to 148393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,378 DEBUG Processing 583/662 atomic regions from SNP 174776 to 175376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,415 DEBUG Processing 330/561 atomic regions from SNP 98835 to 99435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,530 DEBUG Processing 51/532 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,549 DEBUG Processing 494/596 atomic regions from SNP 148093 to 148693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,611 DEBUG Processing 584/662 atomic regions from SNP 175076 to 175676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,632 DEBUG Processing 331/561 atomic regions from SNP 99135 to 99735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,727 DEBUG Processing 52/532 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,748 DEBUG Processing 495/596 atomic regions from SNP 148393 to 148993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,842 DEBUG Processing 585/662 atomic regions from SNP 175376 to 175976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,844 DEBUG Processing 332/561 atomic regions from SNP 99435 to 100035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,937 DEBUG Processing 53/532 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,964 DEBUG Processing 496/596 atomic regions from SNP 148693 to 149293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,058 DEBUG Processing 333/561 atomic regions from SNP 99735 to 100335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,079 DEBUG Processing 586/662 atomic regions from SNP 175676 to 176276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,133 DEBUG Processing 54/532 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,166 DEBUG Processing 497/596 atomic regions from SNP 148993 to 149593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,256 DEBUG Processing 334/561 atomic regions from SNP 100035 to 100635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,299 DEBUG Processing 587/662 atomic regions from SNP 175976 to 176576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,332 DEBUG Processing 55/532 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,367 DEBUG Processing 498/596 atomic regions from SNP 149293 to 149893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,458 DEBUG Processing 335/561 atomic regions from SNP 100335 to 100935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,523 DEBUG Processing 588/662 atomic regions from SNP 176276 to 176876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,547 DEBUG Processing 56/532 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,583 DEBUG Processing 499/596 atomic regions from SNP 149593 to 150193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,657 DEBUG Processing 336/561 atomic regions from SNP 100635 to 101235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,751 DEBUG Processing 589/662 atomic regions from SNP 176576 to 177176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,756 DEBUG Processing 57/532 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,792 DEBUG Processing 500/596 atomic regions from SNP 149893 to 150493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,860 DEBUG Processing 337/561 atomic regions from SNP 100935 to 101535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,958 DEBUG Processing 58/532 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,980 DEBUG Processing 590/662 atomic regions from SNP 176876 to 177476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,002 DEBUG Processing 501/596 atomic regions from SNP 150193 to 150793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,062 DEBUG Processing 338/561 atomic regions from SNP 101235 to 101835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,154 DEBUG Processing 59/532 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,209 DEBUG Processing 591/662 atomic regions from SNP 177176 to 177776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,213 DEBUG Processing 502/596 atomic regions from SNP 150493 to 151093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,258 DEBUG Processing 339/561 atomic regions from SNP 101535 to 102135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,347 DEBUG Processing 60/532 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,418 DEBUG Processing 503/596 atomic regions from SNP 150793 to 151393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,434 DEBUG Processing 592/662 atomic regions from SNP 177476 to 178076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,458 DEBUG Processing 340/561 atomic regions from SNP 101835 to 102435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,544 DEBUG Processing 61/532 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,635 DEBUG Processing 504/596 atomic regions from SNP 151093 to 151693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,662 DEBUG Processing 341/561 atomic regions from SNP 102135 to 102735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,666 DEBUG Processing 593/662 atomic regions from SNP 177776 to 178376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,736 DEBUG Processing 62/532 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,861 DEBUG Processing 342/561 atomic regions from SNP 102435 to 103035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,873 DEBUG Processing 505/596 atomic regions from SNP 151393 to 151993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,902 DEBUG Processing 594/662 atomic regions from SNP 178076 to 178676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,932 DEBUG Processing 63/532 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,060 DEBUG Processing 343/561 atomic regions from SNP 102735 to 103335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,109 DEBUG Processing 506/596 atomic regions from SNP 151693 to 152293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,133 DEBUG Processing 64/532 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,135 DEBUG Processing 595/662 atomic regions from SNP 178376 to 178976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,257 DEBUG Processing 344/561 atomic regions from SNP 103035 to 103635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,337 DEBUG Processing 65/532 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,339 DEBUG Processing 507/596 atomic regions from SNP 151993 to 152593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,364 DEBUG Processing 596/662 atomic regions from SNP 178676 to 179276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,448 DEBUG Processing 345/561 atomic regions from SNP 103335 to 103935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,544 DEBUG Processing 66/532 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,578 DEBUG Processing 508/596 atomic regions from SNP 152293 to 152893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,598 DEBUG Processing 597/662 atomic regions from SNP 178976 to 179576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,643 DEBUG Processing 346/561 atomic regions from SNP 103635 to 104235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,750 DEBUG Processing 67/532 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,812 DEBUG Processing 509/596 atomic regions from SNP 152593 to 153193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,837 DEBUG Processing 347/561 atomic regions from SNP 103935 to 104535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,850 DEBUG Processing 598/662 atomic regions from SNP 179276 to 179876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,958 DEBUG Processing 68/532 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,032 DEBUG Processing 510/596 atomic regions from SNP 152893 to 153493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,035 DEBUG Processing 348/561 atomic regions from SNP 104235 to 104835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,091 DEBUG Processing 599/662 atomic regions from SNP 179576 to 180176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,151 DEBUG Processing 69/532 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,237 DEBUG Processing 511/596 atomic regions from SNP 153193 to 153793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,240 DEBUG Processing 349/561 atomic regions from SNP 104535 to 105135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,317 DEBUG Processing 600/662 atomic regions from SNP 179876 to 180476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,346 DEBUG Processing 70/532 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,441 DEBUG Processing 350/561 atomic regions from SNP 104835 to 105435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,441 DEBUG Processing 512/596 atomic regions from SNP 153493 to 154093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,540 DEBUG Processing 71/532 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,541 DEBUG Processing 601/662 atomic regions from SNP 180176 to 180776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,650 DEBUG Processing 351/561 atomic regions from SNP 105135 to 105735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,654 DEBUG Processing 513/596 atomic regions from SNP 153793 to 154393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,732 DEBUG Processing 72/532 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,767 DEBUG Processing 602/662 atomic regions from SNP 180476 to 181076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,848 DEBUG Processing 352/561 atomic regions from SNP 105435 to 106035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,857 DEBUG Processing 514/596 atomic regions from SNP 154093 to 154693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,926 DEBUG Processing 73/532 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,987 DEBUG Processing 603/662 atomic regions from SNP 180776 to 181376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,052 DEBUG Processing 353/561 atomic regions from SNP 105735 to 106335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,064 DEBUG Processing 515/596 atomic regions from SNP 154393 to 154993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,131 DEBUG Processing 74/532 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,221 DEBUG Processing 604/662 atomic regions from SNP 181076 to 181676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,261 DEBUG Processing 354/561 atomic regions from SNP 106035 to 106635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,276 DEBUG Processing 516/596 atomic regions from SNP 154693 to 155293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,334 DEBUG Processing 75/532 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,451 DEBUG Processing 605/662 atomic regions from SNP 181376 to 181976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,462 DEBUG Processing 355/561 atomic regions from SNP 106335 to 106935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,482 DEBUG Processing 517/596 atomic regions from SNP 154993 to 155593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,527 DEBUG Processing 76/532 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,662 DEBUG Processing 356/561 atomic regions from SNP 106635 to 107235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,672 DEBUG Processing 606/662 atomic regions from SNP 181676 to 182276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,685 DEBUG Processing 518/596 atomic regions from SNP 155293 to 155893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,721 DEBUG Processing 77/532 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,860 DEBUG Processing 357/561 atomic regions from SNP 106935 to 107535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,888 DEBUG Processing 519/596 atomic regions from SNP 155593 to 156193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,901 DEBUG Processing 607/662 atomic regions from SNP 181976 to 182576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,920 DEBUG Processing 78/532 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,058 DEBUG Processing 358/561 atomic regions from SNP 107235 to 107835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,091 DEBUG Processing 520/596 atomic regions from SNP 155893 to 156493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,114 DEBUG Processing 79/532 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,156 DEBUG Processing 608/662 atomic regions from SNP 182276 to 182876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,251 DEBUG Processing 359/561 atomic regions from SNP 107535 to 108135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,291 DEBUG Processing 521/596 atomic regions from SNP 156193 to 156793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,308 DEBUG Processing 80/532 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,414 DEBUG Processing 609/662 atomic regions from SNP 182576 to 183176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,450 DEBUG Processing 360/561 atomic regions from SNP 107835 to 108435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,499 DEBUG Processing 81/532 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,503 DEBUG Processing 522/596 atomic regions from SNP 156493 to 157093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,643 DEBUG Processing 361/561 atomic regions from SNP 108135 to 108735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,667 DEBUG Processing 610/662 atomic regions from SNP 182876 to 183476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,698 DEBUG Processing 82/532 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,712 DEBUG Processing 523/596 atomic regions from SNP 156793 to 157393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,834 DEBUG Processing 362/561 atomic regions from SNP 108435 to 109035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,905 DEBUG Processing 83/532 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,923 DEBUG Processing 524/596 atomic regions from SNP 157093 to 157693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,926 DEBUG Processing 611/662 atomic regions from SNP 183176 to 183776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,022 DEBUG Processing 363/561 atomic regions from SNP 108735 to 109335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,104 DEBUG Processing 84/532 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,130 DEBUG Processing 525/596 atomic regions from SNP 157393 to 157993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,184 DEBUG Processing 612/662 atomic regions from SNP 183476 to 184076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,213 DEBUG Processing 364/561 atomic regions from SNP 109035 to 109635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,302 DEBUG Processing 85/532 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,333 DEBUG Processing 526/596 atomic regions from SNP 157693 to 158293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,411 DEBUG Processing 365/561 atomic regions from SNP 109335 to 109935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,426 DEBUG Processing 613/662 atomic regions from SNP 183776 to 184376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,495 DEBUG Processing 86/532 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,542 DEBUG Processing 527/596 atomic regions from SNP 157993 to 158593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,604 DEBUG Processing 366/561 atomic regions from SNP 109635 to 110235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,684 DEBUG Processing 614/662 atomic regions from SNP 184076 to 184676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,694 DEBUG Processing 87/532 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,745 DEBUG Processing 528/596 atomic regions from SNP 158293 to 158893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,800 DEBUG Processing 367/561 atomic regions from SNP 109935 to 110535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,898 DEBUG Processing 88/532 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,946 DEBUG Processing 529/596 atomic regions from SNP 158593 to 159193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,946 DEBUG Processing 615/662 atomic regions from SNP 184376 to 184976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,994 DEBUG Processing 368/561 atomic regions from SNP 110235 to 110835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,103 DEBUG Processing 89/532 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,149 DEBUG Processing 530/596 atomic regions from SNP 158893 to 159493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,193 DEBUG Processing 369/561 atomic regions from SNP 110535 to 111135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,212 DEBUG Processing 616/662 atomic regions from SNP 184676 to 185276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,309 DEBUG Processing 90/532 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,348 DEBUG Processing 531/596 atomic regions from SNP 159193 to 159793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,387 DEBUG Processing 370/561 atomic regions from SNP 110835 to 111435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,481 DEBUG Processing 617/662 atomic regions from SNP 184976 to 185576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,501 DEBUG Processing 91/532 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,565 DEBUG Processing 532/596 atomic regions from SNP 159493 to 160093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,586 DEBUG Processing 371/561 atomic regions from SNP 111135 to 111735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,696 DEBUG Processing 92/532 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,726 DEBUG Processing 618/662 atomic regions from SNP 185276 to 185876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,785 DEBUG Processing 372/561 atomic regions from SNP 111435 to 112035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,796 DEBUG Processing 533/596 atomic regions from SNP 159793 to 160393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,892 DEBUG Processing 93/532 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,980 DEBUG Processing 619/662 atomic regions from SNP 185576 to 186176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,987 DEBUG Processing 373/561 atomic regions from SNP 111735 to 112335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,020 DEBUG Processing 534/596 atomic regions from SNP 160093 to 160693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,088 DEBUG Processing 94/532 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,185 DEBUG Processing 374/561 atomic regions from SNP 112035 to 112635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,223 DEBUG Processing 620/662 atomic regions from SNP 185876 to 186476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,227 DEBUG Processing 535/596 atomic regions from SNP 160393 to 160993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,279 DEBUG Processing 95/532 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,384 DEBUG Processing 375/561 atomic regions from SNP 112335 to 112935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,428 DEBUG Processing 536/596 atomic regions from SNP 160693 to 161293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,479 DEBUG Processing 96/532 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,480 DEBUG Processing 621/662 atomic regions from SNP 186176 to 186776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,583 DEBUG Processing 376/561 atomic regions from SNP 112635 to 113235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,630 DEBUG Processing 537/596 atomic regions from SNP 160993 to 161593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,670 DEBUG Processing 97/532 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,737 DEBUG Processing 622/662 atomic regions from SNP 186476 to 187076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,777 DEBUG Processing 377/561 atomic regions from SNP 112935 to 113535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,827 DEBUG Processing 538/596 atomic regions from SNP 161293 to 161893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,853 DEBUG Processing 98/532 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,980 DEBUG Processing 378/561 atomic regions from SNP 113235 to 113835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,003 DEBUG Processing 623/662 atomic regions from SNP 186776 to 187376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,035 DEBUG Processing 539/596 atomic regions from SNP 161593 to 162193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,059 DEBUG Processing 99/532 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,193 DEBUG Processing 379/561 atomic regions from SNP 113535 to 114135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,253 DEBUG Processing 540/596 atomic regions from SNP 161893 to 162493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,267 DEBUG Processing 100/532 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,286 DEBUG Processing 624/662 atomic regions from SNP 187076 to 187676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,399 DEBUG Processing 380/561 atomic regions from SNP 113835 to 114435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,470 DEBUG Processing 541/596 atomic regions from SNP 162193 to 162793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,471 DEBUG Processing 101/532 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,558 DEBUG Processing 625/662 atomic regions from SNP 187376 to 187976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,601 DEBUG Processing 381/561 atomic regions from SNP 114135 to 114735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,674 DEBUG Processing 102/532 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,680 DEBUG Processing 542/596 atomic regions from SNP 162493 to 163093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,810 DEBUG Processing 382/561 atomic regions from SNP 114435 to 115035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,837 DEBUG Processing 626/662 atomic regions from SNP 187676 to 188276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,879 DEBUG Processing 103/532 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,885 DEBUG Processing 543/596 atomic regions from SNP 162793 to 163393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,019 DEBUG Processing 383/561 atomic regions from SNP 114735 to 115335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,084 DEBUG Processing 104/532 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,088 DEBUG Processing 627/662 atomic regions from SNP 187976 to 188576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,090 DEBUG Processing 544/596 atomic regions from SNP 163093 to 163693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,209 DEBUG Processing 384/561 atomic regions from SNP 115035 to 115635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,284 DEBUG Processing 105/532 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,287 DEBUG Processing 545/596 atomic regions from SNP 163393 to 163993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,318 DEBUG Processing 628/662 atomic regions from SNP 188276 to 188876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,397 DEBUG Processing 385/561 atomic regions from SNP 115335 to 115935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,484 DEBUG Processing 106/532 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,487 DEBUG Processing 546/596 atomic regions from SNP 163693 to 164293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,552 DEBUG Processing 629/662 atomic regions from SNP 188576 to 189176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,590 DEBUG Processing 386/561 atomic regions from SNP 115635 to 116235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,690 DEBUG Processing 107/532 atomic regions from SNP 31906 to 32506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,693 DEBUG Processing 547/596 atomic regions from SNP 163993 to 164593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,784 DEBUG Processing 630/662 atomic regions from SNP 188876 to 189476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,785 DEBUG Processing 387/561 atomic regions from SNP 115935 to 116535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,890 DEBUG Processing 108/532 atomic regions from SNP 32206 to 32806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,896 DEBUG Processing 548/596 atomic regions from SNP 164293 to 164893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,985 DEBUG Processing 388/561 atomic regions from SNP 116235 to 116835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,018 DEBUG Processing 631/662 atomic regions from SNP 189176 to 189776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,098 DEBUG Processing 109/532 atomic regions from SNP 32506 to 33106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,106 DEBUG Processing 549/596 atomic regions from SNP 164593 to 165193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,187 DEBUG Processing 389/561 atomic regions from SNP 116535 to 117135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,254 DEBUG Processing 632/662 atomic regions from SNP 189476 to 190076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,311 DEBUG Processing 550/596 atomic regions from SNP 164893 to 165493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,331 DEBUG Processing 110/532 atomic regions from SNP 32806 to 33406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,384 DEBUG Processing 390/561 atomic regions from SNP 116835 to 117435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,481 DEBUG Processing 633/662 atomic regions from SNP 189776 to 190376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,544 DEBUG Processing 551/596 atomic regions from SNP 165193 to 165793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,561 DEBUG Processing 111/532 atomic regions from SNP 33106 to 33706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,585 DEBUG Processing 391/561 atomic regions from SNP 117135 to 117735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,708 DEBUG Processing 634/662 atomic regions from SNP 190076 to 190676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,757 DEBUG Processing 552/596 atomic regions from SNP 165493 to 166093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,776 DEBUG Processing 112/532 atomic regions from SNP 33406 to 34006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,785 DEBUG Processing 392/561 atomic regions from SNP 117435 to 118035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,939 DEBUG Processing 635/662 atomic regions from SNP 190376 to 190976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,980 DEBUG Processing 553/596 atomic regions from SNP 165793 to 166393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,989 DEBUG Processing 393/561 atomic regions from SNP 117735 to 118335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,995 DEBUG Processing 113/532 atomic regions from SNP 33706 to 34306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,167 DEBUG Processing 636/662 atomic regions from SNP 190676 to 191276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,201 DEBUG Processing 394/561 atomic regions from SNP 118035 to 118635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,211 DEBUG Processing 554/596 atomic regions from SNP 166093 to 166693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,242 DEBUG Processing 114/532 atomic regions from SNP 34006 to 34606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,420 DEBUG Processing 637/662 atomic regions from SNP 190976 to 191576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,430 DEBUG Processing 395/561 atomic regions from SNP 118335 to 118935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,441 DEBUG Processing 555/596 atomic regions from SNP 166393 to 166993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,497 DEBUG Processing 115/532 atomic regions from SNP 34306 to 34906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,644 DEBUG Processing 396/561 atomic regions from SNP 118635 to 119235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,655 DEBUG Processing 638/662 atomic regions from SNP 191276 to 191876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,658 DEBUG Processing 556/596 atomic regions from SNP 166693 to 167293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,733 DEBUG Processing 116/532 atomic regions from SNP 34606 to 35206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,854 DEBUG Processing 397/561 atomic regions from SNP 118935 to 119535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,880 DEBUG Processing 557/596 atomic regions from SNP 166993 to 167593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,884 DEBUG Processing 639/662 atomic regions from SNP 191576 to 192176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,976 DEBUG Processing 117/532 atomic regions from SNP 34906 to 35506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,063 DEBUG Processing 398/561 atomic regions from SNP 119235 to 119835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,105 DEBUG Processing 558/596 atomic regions from SNP 167293 to 167893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,115 DEBUG Processing 640/662 atomic regions from SNP 191876 to 192476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,206 DEBUG Processing 118/532 atomic regions from SNP 35206 to 35806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,273 DEBUG Processing 399/561 atomic regions from SNP 119535 to 120135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,325 DEBUG Processing 559/596 atomic regions from SNP 167593 to 168193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,358 DEBUG Processing 641/662 atomic regions from SNP 192176 to 192776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,429 DEBUG Processing 119/532 atomic regions from SNP 35506 to 36106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,481 DEBUG Processing 400/561 atomic regions from SNP 119835 to 120435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,553 DEBUG Processing 560/596 atomic regions from SNP 167893 to 168493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,611 DEBUG Processing 642/662 atomic regions from SNP 192476 to 193076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,656 DEBUG Processing 120/532 atomic regions from SNP 35806 to 36406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,692 DEBUG Processing 401/561 atomic regions from SNP 120135 to 120735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,779 DEBUG Processing 561/596 atomic regions from SNP 168193 to 168793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,842 DEBUG Processing 643/662 atomic regions from SNP 192776 to 193376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,890 DEBUG Processing 121/532 atomic regions from SNP 36106 to 36706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,895 DEBUG Processing 402/561 atomic regions from SNP 120435 to 121035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,012 DEBUG Processing 562/596 atomic regions from SNP 168493 to 169093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,068 DEBUG Processing 644/662 atomic regions from SNP 193076 to 193676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,101 DEBUG Processing 403/561 atomic regions from SNP 120735 to 121335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,122 DEBUG Processing 122/532 atomic regions from SNP 36406 to 37006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,234 DEBUG Processing 563/596 atomic regions from SNP 168793 to 169393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,304 DEBUG Processing 404/561 atomic regions from SNP 121035 to 121635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,320 DEBUG Processing 645/662 atomic regions from SNP 193376 to 193976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,370 DEBUG Processing 123/532 atomic regions from SNP 36706 to 37306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,448 DEBUG Processing 564/596 atomic regions from SNP 169093 to 169693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,508 DEBUG Processing 405/561 atomic regions from SNP 121335 to 121935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,553 DEBUG Processing 646/662 atomic regions from SNP 193676 to 194276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,606 DEBUG Processing 124/532 atomic regions from SNP 37006 to 37606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,688 DEBUG Processing 565/596 atomic regions from SNP 169393 to 169993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,708 DEBUG Processing 406/561 atomic regions from SNP 121635 to 122235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,801 DEBUG Processing 647/662 atomic regions from SNP 193976 to 194576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,841 DEBUG Processing 125/532 atomic regions from SNP 37306 to 37906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,914 DEBUG Processing 407/561 atomic regions from SNP 121935 to 122535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,939 DEBUG Processing 566/596 atomic regions from SNP 169693 to 170293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,046 DEBUG Processing 648/662 atomic regions from SNP 194276 to 194876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,070 DEBUG Processing 126/532 atomic regions from SNP 37606 to 38206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,129 DEBUG Processing 408/561 atomic regions from SNP 122235 to 122835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,192 DEBUG Processing 567/596 atomic regions from SNP 169993 to 170593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,265 DEBUG Processing 649/662 atomic regions from SNP 194576 to 195176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,289 DEBUG Processing 127/532 atomic regions from SNP 37906 to 38506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,337 DEBUG Processing 409/561 atomic regions from SNP 122535 to 123135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,445 DEBUG Processing 568/596 atomic regions from SNP 170293 to 170893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,488 DEBUG Processing 650/662 atomic regions from SNP 194876 to 195476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,510 DEBUG Processing 128/532 atomic regions from SNP 38206 to 38806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,552 DEBUG Processing 410/561 atomic regions from SNP 122835 to 123435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,695 DEBUG Processing 569/596 atomic regions from SNP 170593 to 171193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,719 DEBUG Processing 651/662 atomic regions from SNP 195176 to 195776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,736 DEBUG Processing 129/532 atomic regions from SNP 38506 to 39106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,758 DEBUG Processing 411/561 atomic regions from SNP 123135 to 123735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,947 DEBUG Processing 570/596 atomic regions from SNP 170893 to 171493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,963 DEBUG Processing 652/662 atomic regions from SNP 195476 to 196076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,968 DEBUG Processing 130/532 atomic regions from SNP 38806 to 39406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,971 DEBUG Processing 412/561 atomic regions from SNP 123435 to 124035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,194 DEBUG Processing 653/662 atomic regions from SNP 195776 to 196376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,196 DEBUG Processing 413/561 atomic regions from SNP 123735 to 124335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,200 DEBUG Processing 131/532 atomic regions from SNP 39106 to 39706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,206 DEBUG Processing 571/596 atomic regions from SNP 171193 to 171793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,408 DEBUG Processing 414/561 atomic regions from SNP 124035 to 124635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,444 DEBUG Processing 132/532 atomic regions from SNP 39406 to 40006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,455 DEBUG Processing 572/596 atomic regions from SNP 171493 to 172093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,458 DEBUG Processing 654/662 atomic regions from SNP 196076 to 196676 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,620 DEBUG Processing 415/561 atomic regions from SNP 124335 to 124935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,685 DEBUG Processing 133/532 atomic regions from SNP 39706 to 40306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,698 DEBUG Processing 573/596 atomic regions from SNP 171793 to 172393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,699 DEBUG Processing 655/662 atomic regions from SNP 196376 to 196976 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,829 DEBUG Processing 416/561 atomic regions from SNP 124635 to 125235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,917 DEBUG Processing 134/532 atomic regions from SNP 40006 to 40606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,938 DEBUG Processing 656/662 atomic regions from SNP 196676 to 197276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,943 DEBUG Processing 574/596 atomic regions from SNP 172093 to 172693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,038 DEBUG Processing 417/561 atomic regions from SNP 124935 to 125535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,155 DEBUG Processing 135/532 atomic regions from SNP 40306 to 40906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,169 DEBUG Processing 657/662 atomic regions from SNP 196976 to 197576 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,184 DEBUG Processing 575/596 atomic regions from SNP 172393 to 172993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,247 DEBUG Processing 418/561 atomic regions from SNP 125235 to 125835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,398 DEBUG Processing 136/532 atomic regions from SNP 40606 to 41206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,406 DEBUG Processing 658/662 atomic regions from SNP 197276 to 197876 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,432 DEBUG Processing 576/596 atomic regions from SNP 172693 to 173293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,456 DEBUG Processing 419/561 atomic regions from SNP 125535 to 126135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,637 DEBUG Processing 137/532 atomic regions from SNP 40906 to 41506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,644 DEBUG Processing 659/662 atomic regions from SNP 197576 to 198176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,667 DEBUG Processing 420/561 atomic regions from SNP 125835 to 126435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,684 DEBUG Processing 577/596 atomic regions from SNP 172993 to 173593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,866 DEBUG Processing 138/532 atomic regions from SNP 41206 to 41806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,878 DEBUG Processing 421/561 atomic regions from SNP 126135 to 126735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,887 DEBUG Processing 660/662 atomic regions from SNP 197876 to 198476 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,937 DEBUG Processing 578/596 atomic regions from SNP 173293 to 173893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,088 DEBUG Processing 422/561 atomic regions from SNP 126435 to 127035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,107 DEBUG Processing 139/532 atomic regions from SNP 41506 to 42106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,127 DEBUG Processing 661/662 atomic regions from SNP 198176 to 198776 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,179 DEBUG Processing 579/596 atomic regions from SNP 173593 to 174193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,297 DEBUG Processing 423/561 atomic regions from SNP 126735 to 127335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,350 DEBUG Processing 140/532 atomic regions from SNP 41806 to 42406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,368 DEBUG Processing 662/662 atomic regions from SNP 198476 to 199076 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,404 DEBUG Processing 580/596 atomic regions from SNP 173893 to 174493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,499 DEBUG Processing 424/561 atomic regions from SNP 127035 to 127635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,522 DEBUG Unique SNPs positions in subchromosome 1: 199077 2025-01-31 09:59:05,583 DEBUG Processing 141/532 atomic regions from SNP 42106 to 42706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,652 DEBUG Processing 581/596 atomic regions from SNP 174193 to 174793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,704 DEBUG Processing 425/561 atomic regions from SNP 127335 to 127935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,809 DEBUG Processing 142/532 atomic regions from SNP 42406 to 43006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,900 DEBUG Processing 582/596 atomic regions from SNP 174493 to 175093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,908 DEBUG Processing 426/561 atomic regions from SNP 127635 to 128235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,046 DEBUG Processing 143/532 atomic regions from SNP 42706 to 43306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,116 DEBUG Processing 427/561 atomic regions from SNP 127935 to 128535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,132 DEBUG Processing 583/596 atomic regions from SNP 174793 to 175393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,286 DEBUG Processing 144/532 atomic regions from SNP 43006 to 43606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,320 DEBUG Processing 428/561 atomic regions from SNP 128235 to 128835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,344 DEBUG Processing 584/596 atomic regions from SNP 175093 to 175693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,519 DEBUG Processing 145/532 atomic regions from SNP 43306 to 43906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,527 DEBUG Processing 429/561 atomic regions from SNP 128535 to 129135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,554 DEBUG Processing 585/596 atomic regions from SNP 175393 to 175993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,730 DEBUG Processing 430/561 atomic regions from SNP 128835 to 129435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,753 DEBUG Processing 146/532 atomic regions from SNP 43606 to 44206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,787 DEBUG Processing 586/596 atomic regions from SNP 175693 to 176293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,935 DEBUG Processing 431/561 atomic regions from SNP 129135 to 129735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,993 DEBUG Processing 147/532 atomic regions from SNP 43906 to 44506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,038 DEBUG Processing 587/596 atomic regions from SNP 175993 to 176593 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,145 DEBUG Processing 432/561 atomic regions from SNP 129435 to 130035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,223 DEBUG Processing 148/532 atomic regions from SNP 44206 to 44806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,298 DEBUG Processing 588/596 atomic regions from SNP 176293 to 176893 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,355 DEBUG Processing 433/561 atomic regions from SNP 129735 to 130335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,452 DEBUG Processing 149/532 atomic regions from SNP 44506 to 45106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,561 DEBUG Processing 589/596 atomic regions from SNP 176593 to 177193 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,567 DEBUG Processing 434/561 atomic regions from SNP 130035 to 130635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,697 DEBUG Processing 150/532 atomic regions from SNP 44806 to 45406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,798 DEBUG Processing 435/561 atomic regions from SNP 130335 to 130935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,818 DEBUG Processing 590/596 atomic regions from SNP 176893 to 177493 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,926 DEBUG Processing 151/532 atomic regions from SNP 45106 to 45706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,039 DEBUG Processing 436/561 atomic regions from SNP 130635 to 131235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,071 DEBUG Processing 591/596 atomic regions from SNP 177193 to 177793 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,151 DEBUG Processing 152/532 atomic regions from SNP 45406 to 46006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,269 DEBUG Processing 437/561 atomic regions from SNP 130935 to 131535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,305 DEBUG Processing 592/596 atomic regions from SNP 177493 to 178093 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,363 DEBUG Processing 153/532 atomic regions from SNP 45706 to 46306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,485 DEBUG Processing 438/561 atomic regions from SNP 131235 to 131835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,559 DEBUG Processing 593/596 atomic regions from SNP 177793 to 178393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,576 DEBUG Processing 154/532 atomic regions from SNP 46006 to 46606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,699 DEBUG Processing 439/561 atomic regions from SNP 131535 to 132135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,795 DEBUG Processing 155/532 atomic regions from SNP 46306 to 46906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,817 DEBUG Processing 594/596 atomic regions from SNP 178093 to 178693 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,912 DEBUG Processing 440/561 atomic regions from SNP 131835 to 132435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,018 DEBUG Processing 156/532 atomic regions from SNP 46606 to 47206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,074 DEBUG Processing 595/596 atomic regions from SNP 178393 to 178993 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,128 DEBUG Processing 441/561 atomic regions from SNP 132135 to 132735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,247 DEBUG Processing 157/532 atomic regions from SNP 46906 to 47506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,298 DEBUG Processing 596/596 atomic regions from SNP 178693 to 179293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,345 DEBUG Processing 442/561 atomic regions from SNP 132435 to 133035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,446 DEBUG Unique SNPs positions in subchromosome 1: 179294 2025-01-31 09:59:09,474 DEBUG Processing 158/532 atomic regions from SNP 47206 to 47806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,568 DEBUG Processing 443/561 atomic regions from SNP 132735 to 133335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,690 DEBUG Processing 159/532 atomic regions from SNP 47506 to 48106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,785 DEBUG Processing 444/561 atomic regions from SNP 133035 to 133635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,923 DEBUG Processing 160/532 atomic regions from SNP 47806 to 48406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,996 DEBUG Processing 445/561 atomic regions from SNP 133335 to 133935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,150 DEBUG Processing 161/532 atomic regions from SNP 48106 to 48706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,206 DEBUG Processing 446/561 atomic regions from SNP 133635 to 134235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,373 DEBUG Processing 162/532 atomic regions from SNP 48406 to 49006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,423 DEBUG Processing 447/561 atomic regions from SNP 133935 to 134535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,598 DEBUG Processing 163/532 atomic regions from SNP 48706 to 49306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,636 DEBUG Processing 448/561 atomic regions from SNP 134235 to 134835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,816 DEBUG Processing 164/532 atomic regions from SNP 49006 to 49606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,859 DEBUG Processing 449/561 atomic regions from SNP 134535 to 135135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,044 DEBUG Processing 165/532 atomic regions from SNP 49306 to 49906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,076 DEBUG Processing 450/561 atomic regions from SNP 134835 to 135435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,268 DEBUG Processing 166/532 atomic regions from SNP 49606 to 50206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,308 DEBUG Processing 451/561 atomic regions from SNP 135135 to 135735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,472 DEBUG Processing 167/532 atomic regions from SNP 49906 to 50506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,528 DEBUG Processing 452/561 atomic regions from SNP 135435 to 136035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,674 DEBUG Processing 168/532 atomic regions from SNP 50206 to 50806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,746 DEBUG Processing 453/561 atomic regions from SNP 135735 to 136335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,875 DEBUG Processing 169/532 atomic regions from SNP 50506 to 51106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,967 DEBUG Processing 454/561 atomic regions from SNP 136035 to 136635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,078 DEBUG Processing 170/532 atomic regions from SNP 50806 to 51406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,188 DEBUG Processing 455/561 atomic regions from SNP 136335 to 136935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,285 DEBUG Processing 171/532 atomic regions from SNP 51106 to 51706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,407 DEBUG Processing 456/561 atomic regions from SNP 136635 to 137235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,492 DEBUG Processing 172/532 atomic regions from SNP 51406 to 52006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,624 DEBUG Processing 457/561 atomic regions from SNP 136935 to 137535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,725 DEBUG Processing 173/532 atomic regions from SNP 51706 to 52306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,839 DEBUG Processing 458/561 atomic regions from SNP 137235 to 137835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,960 DEBUG Processing 174/532 atomic regions from SNP 52006 to 52606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,058 DEBUG Processing 459/561 atomic regions from SNP 137535 to 138135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,200 DEBUG Processing 175/532 atomic regions from SNP 52306 to 52906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,270 DEBUG Processing 460/561 atomic regions from SNP 137835 to 138435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,417 DEBUG Processing 176/532 atomic regions from SNP 52606 to 53206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,484 DEBUG Processing 461/561 atomic regions from SNP 138135 to 138735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,622 DEBUG Processing 177/532 atomic regions from SNP 52906 to 53506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,704 DEBUG Processing 462/561 atomic regions from SNP 138435 to 139035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,854 DEBUG Processing 178/532 atomic regions from SNP 53206 to 53806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,920 DEBUG Processing 463/561 atomic regions from SNP 138735 to 139335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,088 DEBUG Processing 179/532 atomic regions from SNP 53506 to 54106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,136 DEBUG Processing 464/561 atomic regions from SNP 139035 to 139635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,327 DEBUG Processing 180/532 atomic regions from SNP 53806 to 54406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,350 DEBUG Processing 465/561 atomic regions from SNP 139335 to 139935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,565 DEBUG Processing 181/532 atomic regions from SNP 54106 to 54706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,568 DEBUG Processing 466/561 atomic regions from SNP 139635 to 140235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,786 DEBUG Processing 467/561 atomic regions from SNP 139935 to 140535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,805 DEBUG Processing 182/532 atomic regions from SNP 54406 to 55006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,001 DEBUG Processing 468/561 atomic regions from SNP 140235 to 140835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,027 DEBUG Processing 183/532 atomic regions from SNP 54706 to 55306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,221 DEBUG Processing 469/561 atomic regions from SNP 140535 to 141135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,260 DEBUG Processing 184/532 atomic regions from SNP 55006 to 55606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,443 DEBUG Processing 470/561 atomic regions from SNP 140835 to 141435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,496 DEBUG Processing 185/532 atomic regions from SNP 55306 to 55906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,666 DEBUG Processing 471/561 atomic regions from SNP 141135 to 141735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,725 DEBUG Processing 186/532 atomic regions from SNP 55606 to 56206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,877 DEBUG Processing 472/561 atomic regions from SNP 141435 to 142035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,926 DEBUG Processing 187/532 atomic regions from SNP 55906 to 56506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,080 DEBUG Processing 473/561 atomic regions from SNP 141735 to 142335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,108 DEBUG Processing 188/532 atomic regions from SNP 56206 to 56806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,282 DEBUG Processing 474/561 atomic regions from SNP 142035 to 142635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,290 DEBUG Processing 189/532 atomic regions from SNP 56506 to 57106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,474 DEBUG Processing 190/532 atomic regions from SNP 56806 to 57406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,489 DEBUG Processing 475/561 atomic regions from SNP 142335 to 142935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,674 DEBUG Processing 191/532 atomic regions from SNP 57106 to 57706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,697 DEBUG Processing 476/561 atomic regions from SNP 142635 to 143235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,859 DEBUG Processing 192/532 atomic regions from SNP 57406 to 58006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,905 DEBUG Processing 477/561 atomic regions from SNP 142935 to 143535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,040 DEBUG Processing 193/532 atomic regions from SNP 57706 to 58306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,112 DEBUG Processing 478/561 atomic regions from SNP 143235 to 143835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,228 DEBUG Processing 194/532 atomic regions from SNP 58006 to 58606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,317 DEBUG Processing 479/561 atomic regions from SNP 143535 to 144135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,415 DEBUG Processing 195/532 atomic regions from SNP 58306 to 58906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,518 DEBUG Processing 480/561 atomic regions from SNP 143835 to 144435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,599 DEBUG Processing 196/532 atomic regions from SNP 58606 to 59206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,703 DEBUG Subchromosome time: 161.65396162704565, subchromosome SNPs: 179294 2025-01-31 09:59:17,703 DEBUG Estimated BADs: [0.94, 1.88, 0.47, 0.94, 1.88, 5.65, 1.88, 13.19, 1.88, 0.47, 5.65, 0.94, 3.77, 0.94, 3.77, 0.94, 3.77, 0.94, 7.54, 1.88, 7.54, 3.77, 1.88, 5.65, 0.94, 1.88, 5.65, 1.88] SNP counts: [3349, 14806, 21070, 14308, 3750, 1792, 2211, 204, 11399, 9978, 142, 11787, 3596, 7799, 605, 4113, 1277, 9909, 405, 4471, 12223, 6641, 5519, 1930, 6315, 9676, 9188, 831] SNP IDs counts: [3349, 14806, 21070, 14308, 3750, 1792, 2211, 204, 11399, 9978, 142, 11787, 3596, 7799, 605, 4113, 1277, 9909, 405, 4471, 12223, 6641, 5519, 1930, 6315, 9676, 9188, 831] Critical gap: 547159bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 13.44Mbp, 25.80Mbp, 34.01Mbp, 36.12Mbp, 37.09Mbp, 38.28Mbp, 38.39Mbp, 44.93Mbp, 50.82Mbp, 50.89Mbp, 57.59Mbp, 59.50Mbp, 63.99Mbp, 64.30Mbp, 66.67Mbp, 67.37Mbp, 72.97Mbp, 73.19Mbp, 75.66Mbp, 82.20Mbp, 85.78Mbp, 88.72Mbp, 89.77Mbp, 93.26Mbp, 98.50Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:59:17,703 DEBUG chr15 time: 161.65449701307807 s 2025-01-31 09:59:17,738 DEBUG Processing 481/561 atomic regions from SNP 144135 to 144735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,782 DEBUG Processing 197/532 atomic regions from SNP 58906 to 59506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,809 DEBUG chr15: Fitting background model for 28 segments 2025-01-31 09:59:17,947 DEBUG Processing 482/561 atomic regions from SNP 144435 to 145035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,967 DEBUG Processing 198/532 atomic regions from SNP 59206 to 59806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,151 DEBUG Processing 199/532 atomic regions from SNP 59506 to 60106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,157 DEBUG Processing 483/561 atomic regions from SNP 144735 to 145335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,328 DEBUG Subchromosome time: 194.98329450003803, subchromosome SNPs: 199077 2025-01-31 09:59:18,336 DEBUG Processing 200/532 atomic regions from SNP 59806 to 60406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,339 DEBUG Estimated BADs: [2.64, 0.44, 1.32, 0.66, 1.32, 5.29, 1.32, 2.64, 0.66, 1.32, 0.26, 1.32, 0.44, 2.64, 1.32, 5.29, 1.32, 3.97, 1.32, 3.97, 1.32, 0.26, 1.32, 2.64, 1.32, 5.29, 0.44, 1.32] SNP counts: [4117, 2574, 5113, 9653, 9064, 581, 12983, 2416, 31168, 14397, 6904, 2738, 6254, 5520, 7500, 1064, 5787, 1442, 4137, 7864, 8399, 8681, 3339, 11984, 8472, 6519, 3703, 6704] SNP IDs counts: [4117, 2574, 5113, 9653, 9064, 581, 12983, 2416, 31168, 14397, 6904, 2738, 6254, 5520, 7500, 1064, 5787, 1442, 4137, 7864, 8399, 8681, 3339, 11984, 8472, 6519, 3703, 6704] Critical gap: 602383bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.31Mbp, 6.82Mbp, 9.67Mbp, 15.26Mbp, 24.56Mbp, 24.87Mbp, 31.94Mbp, 33.26Mbp, 51.47Mbp, 59.72Mbp, 63.91Mbp, 65.49Mbp, 69.15Mbp, 72.11Mbp, 76.18Mbp, 76.77Mbp, 79.97Mbp, 80.72Mbp, 83.02Mbp, 87.15Mbp, 92.27Mbp, 97.41Mbp, 99.27Mbp, 105.87Mbp, 110.37Mbp, 113.89Mbp, 116.26Mbp, 120.13Mbp] 2025-01-31 09:59:18,339 DEBUG chr12 time: 194.99407785909716 s 2025-01-31 09:59:18,360 DEBUG Processing 484/561 atomic regions from SNP 145035 to 145635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,462 DEBUG chr12: Fitting background model for 28 segments 2025-01-31 09:59:18,523 DEBUG Processing 201/532 atomic regions from SNP 60106 to 60706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,565 DEBUG Processing 485/561 atomic regions from SNP 145335 to 145935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,714 DEBUG Processing 202/532 atomic regions from SNP 60406 to 61006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,764 DEBUG Processing 486/561 atomic regions from SNP 145635 to 146235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,896 DEBUG Processing 203/532 atomic regions from SNP 60706 to 61306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,967 DEBUG Processing 487/561 atomic regions from SNP 145935 to 146535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,081 DEBUG Processing 204/532 atomic regions from SNP 61006 to 61606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,167 DEBUG Processing 488/561 atomic regions from SNP 146235 to 146835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,266 DEBUG Processing 205/532 atomic regions from SNP 61306 to 61906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,369 DEBUG Processing 489/561 atomic regions from SNP 146535 to 147135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,455 DEBUG Processing 206/532 atomic regions from SNP 61606 to 62206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,569 DEBUG Processing 490/561 atomic regions from SNP 146835 to 147435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,640 DEBUG Processing 207/532 atomic regions from SNP 61906 to 62506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,771 DEBUG Processing 491/561 atomic regions from SNP 147135 to 147735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,828 DEBUG Processing 208/532 atomic regions from SNP 62206 to 62806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,986 DEBUG Processing 492/561 atomic regions from SNP 147435 to 148035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,019 DEBUG Processing 209/532 atomic regions from SNP 62506 to 63106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,196 DEBUG Processing 493/561 atomic regions from SNP 147735 to 148335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,210 DEBUG Processing 210/532 atomic regions from SNP 62806 to 63406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,438 DEBUG Processing 211/532 atomic regions from SNP 63106 to 63706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,443 DEBUG Processing 494/561 atomic regions from SNP 148035 to 148635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,624 DEBUG Processing 212/532 atomic regions from SNP 63406 to 64006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,646 DEBUG Processing 495/561 atomic regions from SNP 148335 to 148935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,810 DEBUG Processing 213/532 atomic regions from SNP 63706 to 64306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,862 DEBUG Processing 496/561 atomic regions from SNP 148635 to 149235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,999 DEBUG Processing 214/532 atomic regions from SNP 64006 to 64606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,086 DEBUG Processing 497/561 atomic regions from SNP 148935 to 149535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,186 DEBUG Processing 215/532 atomic regions from SNP 64306 to 64906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,304 DEBUG Processing 498/561 atomic regions from SNP 149235 to 149835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,378 DEBUG Processing 216/532 atomic regions from SNP 64606 to 65206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,509 DEBUG Processing 499/561 atomic regions from SNP 149535 to 150135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,567 DEBUG Processing 217/532 atomic regions from SNP 64906 to 65506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,706 DEBUG Processing 500/561 atomic regions from SNP 149835 to 150435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,755 DEBUG Processing 218/532 atomic regions from SNP 65206 to 65806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,917 DEBUG Processing 501/561 atomic regions from SNP 150135 to 150735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,949 DEBUG Processing 219/532 atomic regions from SNP 65506 to 66106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,136 DEBUG Processing 502/561 atomic regions from SNP 150435 to 151035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,153 DEBUG Processing 220/532 atomic regions from SNP 65806 to 66406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,353 DEBUG Processing 221/532 atomic regions from SNP 66106 to 66706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,368 DEBUG Processing 503/561 atomic regions from SNP 150735 to 151335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,551 DEBUG Processing 222/532 atomic regions from SNP 66406 to 67006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,592 DEBUG Processing 504/561 atomic regions from SNP 151035 to 151635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,751 DEBUG Processing 223/532 atomic regions from SNP 66706 to 67306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,822 DEBUG Processing 505/561 atomic regions from SNP 151335 to 151935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,945 DEBUG Processing 224/532 atomic regions from SNP 67006 to 67606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,032 DEBUG Processing 506/561 atomic regions from SNP 151635 to 152235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,139 DEBUG Processing 225/532 atomic regions from SNP 67306 to 67906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,238 DEBUG Processing 507/561 atomic regions from SNP 151935 to 152535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,330 DEBUG Processing 226/532 atomic regions from SNP 67606 to 68206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,438 DEBUG Processing 508/561 atomic regions from SNP 152235 to 152835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,516 DEBUG Processing 227/532 atomic regions from SNP 67906 to 68506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,635 DEBUG Processing 509/561 atomic regions from SNP 152535 to 153135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,702 DEBUG Processing 228/532 atomic regions from SNP 68206 to 68806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,832 DEBUG Processing 510/561 atomic regions from SNP 152835 to 153435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,896 DEBUG Processing 229/532 atomic regions from SNP 68506 to 69106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,058 DEBUG Processing 511/561 atomic regions from SNP 153135 to 153735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,093 DEBUG Processing 230/532 atomic regions from SNP 68806 to 69406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,291 DEBUG Processing 231/532 atomic regions from SNP 69106 to 69706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,301 DEBUG Processing 512/561 atomic regions from SNP 153435 to 154035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,484 DEBUG Processing 232/532 atomic regions from SNP 69406 to 70006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,539 DEBUG Processing 513/561 atomic regions from SNP 153735 to 154335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,681 DEBUG Processing 233/532 atomic regions from SNP 69706 to 70306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,777 DEBUG Processing 514/561 atomic regions from SNP 154035 to 154635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,877 DEBUG Processing 234/532 atomic regions from SNP 70006 to 70606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,993 DEBUG Processing 515/561 atomic regions from SNP 154335 to 154935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,075 DEBUG Processing 235/532 atomic regions from SNP 70306 to 70906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,226 DEBUG Processing 516/561 atomic regions from SNP 154635 to 155235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,273 DEBUG Processing 236/532 atomic regions from SNP 70606 to 71206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,473 DEBUG Processing 237/532 atomic regions from SNP 70906 to 71506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,485 DEBUG Processing 517/561 atomic regions from SNP 154935 to 155535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,670 DEBUG Processing 238/532 atomic regions from SNP 71206 to 71806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,739 DEBUG Processing 518/561 atomic regions from SNP 155235 to 155835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,881 DEBUG Processing 239/532 atomic regions from SNP 71506 to 72106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,986 DEBUG Processing 519/561 atomic regions from SNP 155535 to 156135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,107 DEBUG Processing 240/532 atomic regions from SNP 71806 to 72406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,233 DEBUG Processing 520/561 atomic regions from SNP 155835 to 156435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,333 DEBUG Processing 241/532 atomic regions from SNP 72106 to 72706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,496 DEBUG Processing 521/561 atomic regions from SNP 156135 to 156735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,559 DEBUG Processing 242/532 atomic regions from SNP 72406 to 73006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,757 DEBUG Processing 522/561 atomic regions from SNP 156435 to 157035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,782 DEBUG Processing 243/532 atomic regions from SNP 72706 to 73306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,999 DEBUG Processing 244/532 atomic regions from SNP 73006 to 73606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,005 DEBUG Processing 523/561 atomic regions from SNP 156735 to 157335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,216 DEBUG Processing 245/532 atomic regions from SNP 73306 to 73906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,256 DEBUG Processing 524/561 atomic regions from SNP 157035 to 157635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,436 DEBUG Processing 246/532 atomic regions from SNP 73606 to 74206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,500 DEBUG Processing 525/561 atomic regions from SNP 157335 to 157935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,663 DEBUG Processing 247/532 atomic regions from SNP 73906 to 74506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,737 DEBUG Processing 526/561 atomic regions from SNP 157635 to 158235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,885 DEBUG Processing 248/532 atomic regions from SNP 74206 to 74806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,988 DEBUG Processing 527/561 atomic regions from SNP 157935 to 158535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,085 DEBUG Processing 249/532 atomic regions from SNP 74506 to 75106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,232 DEBUG Processing 528/561 atomic regions from SNP 158235 to 158835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,276 DEBUG Processing 250/532 atomic regions from SNP 74806 to 75406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,472 DEBUG Processing 529/561 atomic regions from SNP 158535 to 159135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,483 DEBUG Processing 251/532 atomic regions from SNP 75106 to 75706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,711 DEBUG Processing 252/532 atomic regions from SNP 75406 to 76006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,717 DEBUG Processing 530/561 atomic regions from SNP 158835 to 159435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,940 DEBUG Processing 253/532 atomic regions from SNP 75706 to 76306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,946 DEBUG Processing 531/561 atomic regions from SNP 159135 to 159735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,160 DEBUG Processing 254/532 atomic regions from SNP 76006 to 76606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,171 DEBUG Processing 532/561 atomic regions from SNP 159435 to 160035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,385 DEBUG Processing 533/561 atomic regions from SNP 159735 to 160335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,387 DEBUG Processing 255/532 atomic regions from SNP 76306 to 76906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,603 DEBUG Processing 256/532 atomic regions from SNP 76606 to 77206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,608 DEBUG Processing 534/561 atomic regions from SNP 160035 to 160635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,814 DEBUG Processing 257/532 atomic regions from SNP 76906 to 77506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,846 DEBUG Processing 535/561 atomic regions from SNP 160335 to 160935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,036 DEBUG Processing 258/532 atomic regions from SNP 77206 to 77806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,086 DEBUG Processing 536/561 atomic regions from SNP 160635 to 161235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,225 DEBUG Processing 259/532 atomic regions from SNP 77506 to 78106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,314 DEBUG Processing 537/561 atomic regions from SNP 160935 to 161535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,413 DEBUG Processing 260/532 atomic regions from SNP 77806 to 78406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,545 DEBUG Processing 538/561 atomic regions from SNP 161235 to 161835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,599 DEBUG Processing 261/532 atomic regions from SNP 78106 to 78706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,781 DEBUG Processing 539/561 atomic regions from SNP 161535 to 162135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,787 DEBUG Processing 262/532 atomic regions from SNP 78406 to 79006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,986 DEBUG Processing 263/532 atomic regions from SNP 78706 to 79306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,012 DEBUG Processing 540/561 atomic regions from SNP 161835 to 162435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,184 DEBUG Processing 264/532 atomic regions from SNP 79006 to 79606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,253 DEBUG Processing 541/561 atomic regions from SNP 162135 to 162735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,389 DEBUG Processing 265/532 atomic regions from SNP 79306 to 79906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,495 DEBUG Processing 542/561 atomic regions from SNP 162435 to 163035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,588 DEBUG Processing 266/532 atomic regions from SNP 79606 to 80206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,711 DEBUG Processing 543/561 atomic regions from SNP 162735 to 163335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,789 DEBUG Processing 267/532 atomic regions from SNP 79906 to 80506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,927 DEBUG Processing 544/561 atomic regions from SNP 163035 to 163635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,987 DEBUG Processing 268/532 atomic regions from SNP 80206 to 80806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,137 DEBUG Processing 545/561 atomic regions from SNP 163335 to 163935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,180 DEBUG Processing 269/532 atomic regions from SNP 80506 to 81106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,344 DEBUG Processing 546/561 atomic regions from SNP 163635 to 164235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,368 DEBUG Processing 270/532 atomic regions from SNP 80806 to 81406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,547 DEBUG Processing 547/561 atomic regions from SNP 163935 to 164535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,552 DEBUG Processing 271/532 atomic regions from SNP 81106 to 81706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,740 DEBUG Processing 272/532 atomic regions from SNP 81406 to 82006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,748 DEBUG Processing 548/561 atomic regions from SNP 164235 to 164835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,929 DEBUG Processing 273/532 atomic regions from SNP 81706 to 82306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,955 DEBUG Processing 549/561 atomic regions from SNP 164535 to 165135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,117 DEBUG Processing 274/532 atomic regions from SNP 82006 to 82606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,184 DEBUG Processing 550/561 atomic regions from SNP 164835 to 165435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,305 DEBUG Processing 275/532 atomic regions from SNP 82306 to 82906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,413 DEBUG Processing 551/561 atomic regions from SNP 165135 to 165735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,507 DEBUG Processing 276/532 atomic regions from SNP 82606 to 83206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,625 DEBUG Processing 552/561 atomic regions from SNP 165435 to 166035 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,712 DEBUG Processing 277/532 atomic regions from SNP 82906 to 83506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,815 DEBUG Processing 553/561 atomic regions from SNP 165735 to 166335 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,898 DEBUG Processing 278/532 atomic regions from SNP 83206 to 83806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,028 DEBUG Processing 554/561 atomic regions from SNP 166035 to 166635 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,082 DEBUG Processing 279/532 atomic regions from SNP 83506 to 84106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,247 DEBUG Processing 555/561 atomic regions from SNP 166335 to 166935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,277 DEBUG Processing 280/532 atomic regions from SNP 83806 to 84406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,472 DEBUG Processing 281/532 atomic regions from SNP 84106 to 84706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,475 DEBUG Processing 556/561 atomic regions from SNP 166635 to 167235 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,670 DEBUG Processing 282/532 atomic regions from SNP 84406 to 85006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,694 DEBUG Processing 557/561 atomic regions from SNP 166935 to 167535 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,863 DEBUG Processing 283/532 atomic regions from SNP 84706 to 85306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,918 DEBUG Processing 558/561 atomic regions from SNP 167235 to 167835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,056 DEBUG Processing 284/532 atomic regions from SNP 85006 to 85606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,139 DEBUG Processing 559/561 atomic regions from SNP 167535 to 168135 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,251 DEBUG Processing 285/532 atomic regions from SNP 85306 to 85906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,352 DEBUG Processing 560/561 atomic regions from SNP 167835 to 168435 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,441 DEBUG Processing 286/532 atomic regions from SNP 85606 to 86206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,572 DEBUG Processing 561/561 atomic regions from SNP 168135 to 168735 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,638 DEBUG Processing 287/532 atomic regions from SNP 85906 to 86506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,723 DEBUG Unique SNPs positions in subchromosome 1: 168736 2025-01-31 09:59:35,826 DEBUG Processing 288/532 atomic regions from SNP 86206 to 86806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,022 DEBUG Processing 289/532 atomic regions from SNP 86506 to 87106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,044 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:59:36,208 DEBUG Processing 290/532 atomic regions from SNP 86806 to 87406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,395 DEBUG Processing 291/532 atomic regions from SNP 87106 to 87706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,582 DEBUG Processing 292/532 atomic regions from SNP 87406 to 88006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,770 DEBUG Processing 293/532 atomic regions from SNP 87706 to 88306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,968 DEBUG Processing 294/532 atomic regions from SNP 88006 to 88606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,157 DEBUG Processing 295/532 atomic regions from SNP 88306 to 88906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,347 DEBUG Processing 296/532 atomic regions from SNP 88606 to 89206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,538 DEBUG Processing 297/532 atomic regions from SNP 88906 to 89506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,732 DEBUG Processing 298/532 atomic regions from SNP 89206 to 89806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,927 DEBUG Processing 299/532 atomic regions from SNP 89506 to 90106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,120 DEBUG Processing 300/532 atomic regions from SNP 89806 to 90406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,317 DEBUG Processing 301/532 atomic regions from SNP 90106 to 90706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,541 DEBUG Processing 302/532 atomic regions from SNP 90406 to 91006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,774 DEBUG Processing 303/532 atomic regions from SNP 90706 to 91306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,008 DEBUG Processing 304/532 atomic regions from SNP 91006 to 91606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,236 DEBUG Processing 305/532 atomic regions from SNP 91306 to 91906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,472 DEBUG Processing 306/532 atomic regions from SNP 91606 to 92206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,707 DEBUG Processing 307/532 atomic regions from SNP 91906 to 92506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,937 DEBUG Processing 308/532 atomic regions from SNP 92206 to 92806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,176 DEBUG Processing 309/532 atomic regions from SNP 92506 to 93106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,392 DEBUG Processing 310/532 atomic regions from SNP 92806 to 93406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,585 DEBUG Processing 311/532 atomic regions from SNP 93106 to 93706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,778 DEBUG Processing 312/532 atomic regions from SNP 93406 to 94006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,965 DEBUG Processing 313/532 atomic regions from SNP 93706 to 94306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,149 DEBUG Processing 314/532 atomic regions from SNP 94006 to 94606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,334 DEBUG Processing 315/532 atomic regions from SNP 94306 to 94906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,520 DEBUG Processing 316/532 atomic regions from SNP 94606 to 95206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,703 DEBUG Processing 317/532 atomic regions from SNP 94906 to 95506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,889 DEBUG Processing 318/532 atomic regions from SNP 95206 to 95806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,079 DEBUG Processing 319/532 atomic regions from SNP 95506 to 96106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,272 DEBUG Processing 320/532 atomic regions from SNP 95806 to 96406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,463 DEBUG Processing 321/532 atomic regions from SNP 96106 to 96706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,655 DEBUG Processing 322/532 atomic regions from SNP 96406 to 97006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,850 DEBUG Processing 323/532 atomic regions from SNP 96706 to 97306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,045 DEBUG Processing 324/532 atomic regions from SNP 97006 to 97606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,239 DEBUG Processing 325/532 atomic regions from SNP 97306 to 97906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,440 DEBUG Processing 326/532 atomic regions from SNP 97606 to 98206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,645 DEBUG Processing 327/532 atomic regions from SNP 97906 to 98506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,844 DEBUG Processing 328/532 atomic regions from SNP 98206 to 98806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,047 DEBUG Processing 329/532 atomic regions from SNP 98506 to 99106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,249 DEBUG Processing 330/532 atomic regions from SNP 98806 to 99406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,265 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:59:44,267 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:59:44,449 DEBUG Processing 331/532 atomic regions from SNP 99106 to 99706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,646 DEBUG Processing 332/532 atomic regions from SNP 99406 to 100006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,844 DEBUG Processing 333/532 atomic regions from SNP 99706 to 100306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,051 DEBUG Processing 334/532 atomic regions from SNP 100006 to 100606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,256 DEBUG Processing 335/532 atomic regions from SNP 100306 to 100906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,460 DEBUG Processing 336/532 atomic regions from SNP 100606 to 101206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,655 DEBUG Processing 337/532 atomic regions from SNP 100906 to 101506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,850 DEBUG Processing 338/532 atomic regions from SNP 101206 to 101806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,998 DEBUG Subchromosome time: 151.43994143791497, subchromosome SNPs: 168736 2025-01-31 09:59:45,999 DEBUG Estimated BADs: [1.56, 4.68, 0.78, 4.68, 0.78, 3.12, 1.56, 4.68, 0.52, 3.12, 0.78, 3.12, 0.78, 0.39, 1.56, 4.68, 0.39, 0.78, 4.68, 1.56, 6.24, 3.12] SNP counts: [730, 2979, 5424, 1503, 2101, 7651, 4387, 3617, 887, 6948, 10203, 18307, 20704, 8570, 4571, 630, 9012, 40591, 467, 3745, 8930, 6779] SNP IDs counts: [730, 2979, 5424, 1503, 2101, 7651, 4387, 3617, 887, 6948, 10203, 18307, 20704, 8570, 4571, 630, 9012, 40591, 467, 3745, 8930, 6779] Critical gap: 531066bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.85Mbp, 5.43Mbp, 8.40Mbp, 9.22Mbp, 10.37Mbp, 14.54Mbp, 17.12Mbp, 19.06Mbp, 19.65Mbp, 23.48Mbp, 29.17Mbp, 39.01Mbp, 50.74Mbp, 55.82Mbp, 58.44Mbp, 58.80Mbp, 64.21Mbp, 87.42Mbp, 87.67Mbp, 89.76Mbp, 94.48Mbp, 98.21Mbp] 2025-01-31 09:59:45,999 DEBUG chr16 time: 151.44052142999135 s 2025-01-31 09:59:46,044 DEBUG Processing 339/532 atomic regions from SNP 101506 to 102106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,081 DEBUG chrY total SNP count: 128 2025-01-31 09:59:46,081 DEBUG chrY length: 91744698 2025-01-31 09:59:46,081 DEBUG ----------------------------------------- 2025-01-31 09:59:46,082 INFO Processing SNPs in chrY 2025-01-31 09:59:46,083 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 1), (1, 22), (22, 41), (41, 52), (52, 57), (57, 66), (66, 67), (67, 75), (75, 76), (76, 79), (79, 81), (81, 85), (85, 86), (86, 128)] 2025-01-31 09:59:46,083 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [1, 21, 19, 11, 5, 9, 1, 8, 1, 3, 2, 4, 1, 42] SNP IDs counts: [1, 21, 19, 11, 5, 9, 1, 8, 1, 3, 2, 4, 1, 42] Critical gap: 18967bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.69Mbp], 0.69Mbp[0.15Mbp], 0.87Mbp[1.01Mbp], 1.89Mbp[2.00Mbp], 3.90Mbp[0.25Mbp], 4.15Mbp[0.06Mbp], 4.21Mbp[3.94Mbp], 8.15Mbp[2.55Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[17.31Mbp], 40.03Mbp[3.01Mbp], 43.04Mbp[0.88Mbp], 43.93Mbp[42.81Mbp], 86.75Mbp[3.97Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:59:46,083 DEBUG chrY time: 0.0019367039203643799 s 2025-01-31 09:59:46,107 DEBUG chr16: Fitting background model for 22 segments 2025-01-31 09:59:46,251 DEBUG Processing 340/532 atomic regions from SNP 101806 to 102406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,447 DEBUG Processing 341/532 atomic regions from SNP 102106 to 102706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,639 DEBUG Processing 342/532 atomic regions from SNP 102406 to 103006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,829 DEBUG Processing 343/532 atomic regions from SNP 102706 to 103306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,030 DEBUG Processing 344/532 atomic regions from SNP 103006 to 103606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,227 DEBUG Processing 345/532 atomic regions from SNP 103306 to 103906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,426 DEBUG Processing 346/532 atomic regions from SNP 103606 to 104206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,615 DEBUG Processing 347/532 atomic regions from SNP 103906 to 104506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,807 DEBUG Processing 348/532 atomic regions from SNP 104206 to 104806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,998 DEBUG Processing 349/532 atomic regions from SNP 104506 to 105106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,192 DEBUG Processing 350/532 atomic regions from SNP 104806 to 105406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,384 DEBUG Processing 351/532 atomic regions from SNP 105106 to 105706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,585 DEBUG Processing 352/532 atomic regions from SNP 105406 to 106006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,778 DEBUG Processing 353/532 atomic regions from SNP 105706 to 106306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,814 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:59:48,973 DEBUG Processing 354/532 atomic regions from SNP 106006 to 106606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,162 DEBUG Processing 355/532 atomic regions from SNP 106306 to 106906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,348 DEBUG Processing 356/532 atomic regions from SNP 106606 to 107206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,542 DEBUG Processing 357/532 atomic regions from SNP 106906 to 107506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,728 DEBUG Processing 358/532 atomic regions from SNP 107206 to 107806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,932 DEBUG Processing 359/532 atomic regions from SNP 107506 to 108106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,139 DEBUG Processing 360/532 atomic regions from SNP 107806 to 108406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,359 DEBUG Processing 361/532 atomic regions from SNP 108106 to 108706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,576 DEBUG Processing 362/532 atomic regions from SNP 108406 to 109006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,779 DEBUG Processing 363/532 atomic regions from SNP 108706 to 109306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,977 DEBUG Processing 364/532 atomic regions from SNP 109006 to 109606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,176 DEBUG Processing 365/532 atomic regions from SNP 109306 to 109906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,387 DEBUG Processing 366/532 atomic regions from SNP 109606 to 110206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,584 DEBUG Processing 367/532 atomic regions from SNP 109906 to 110506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,788 DEBUG Processing 368/532 atomic regions from SNP 110206 to 110806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,984 DEBUG Processing 369/532 atomic regions from SNP 110506 to 111106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,183 DEBUG Processing 370/532 atomic regions from SNP 110806 to 111406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,387 DEBUG Processing 371/532 atomic regions from SNP 111106 to 111706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,599 DEBUG Processing 372/532 atomic regions from SNP 111406 to 112006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,799 DEBUG Processing 373/532 atomic regions from SNP 111706 to 112306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,996 DEBUG Processing 374/532 atomic regions from SNP 112006 to 112606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,203 DEBUG Processing 375/532 atomic regions from SNP 112306 to 112906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,400 DEBUG Processing 376/532 atomic regions from SNP 112606 to 113206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,591 DEBUG Processing 377/532 atomic regions from SNP 112906 to 113506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,781 DEBUG Processing 378/532 atomic regions from SNP 113206 to 113806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,971 DEBUG Processing 379/532 atomic regions from SNP 113506 to 114106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,165 DEBUG Processing 380/532 atomic regions from SNP 113806 to 114406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,355 DEBUG Processing 381/532 atomic regions from SNP 114106 to 114706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,363 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:59:54,550 DEBUG Processing 382/532 atomic regions from SNP 114406 to 115006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,742 DEBUG Processing 383/532 atomic regions from SNP 114706 to 115306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,940 DEBUG Processing 384/532 atomic regions from SNP 115006 to 115606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,131 DEBUG Processing 385/532 atomic regions from SNP 115306 to 115906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,323 DEBUG Processing 386/532 atomic regions from SNP 115606 to 116206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,511 DEBUG Processing 387/532 atomic regions from SNP 115906 to 116506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,703 DEBUG Processing 388/532 atomic regions from SNP 116206 to 116806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,895 DEBUG Processing 389/532 atomic regions from SNP 116506 to 117106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,098 DEBUG Processing 390/532 atomic regions from SNP 116806 to 117406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,311 DEBUG Processing 391/532 atomic regions from SNP 117106 to 117706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,529 DEBUG Processing 392/532 atomic regions from SNP 117406 to 118006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,746 DEBUG Processing 393/532 atomic regions from SNP 117706 to 118306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,944 DEBUG Processing 394/532 atomic regions from SNP 118006 to 118606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,150 DEBUG Processing 395/532 atomic regions from SNP 118306 to 118906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,347 DEBUG Processing 396/532 atomic regions from SNP 118606 to 119206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,536 DEBUG Processing 397/532 atomic regions from SNP 118906 to 119506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,732 DEBUG Processing 398/532 atomic regions from SNP 119206 to 119806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,931 DEBUG Processing 399/532 atomic regions from SNP 119506 to 120106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,129 DEBUG Processing 400/532 atomic regions from SNP 119806 to 120406 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,323 DEBUG Processing 401/532 atomic regions from SNP 120106 to 120706 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,512 DEBUG Processing 402/532 atomic regions from SNP 120406 to 121006 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,521 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:59:58,522 DEBUG chr18: Signal quantile: 0.991. signal threshold: 10. Best RMSEA: 0.013 2025-01-31 09:59:58,708 DEBUG Processing 403/532 atomic regions from SNP 120706 to 121306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,909 DEBUG Processing 404/532 atomic regions from SNP 121006 to 121606 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,113 DEBUG Processing 405/532 atomic regions from SNP 121306 to 121906 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,307 DEBUG Processing 406/532 atomic regions from SNP 121606 to 122206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,498 DEBUG Processing 407/532 atomic regions from SNP 121906 to 122506 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,690 DEBUG Processing 408/532 atomic regions from SNP 122206 to 122806 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,876 DEBUG Processing 409/532 atomic regions from SNP 122506 to 123106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,061 DEBUG Processing 410/532 atomic regions from SNP 122806 to 123406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,166 DEBUG chr18 total SNP count: 155931 2025-01-31 10:00:00,166 DEBUG chr18 length: 90702639 2025-01-31 10:00:00,166 DEBUG ----------------------------------------- 2025-01-31 10:00:00,166 INFO Processing SNPs in chr18 2025-01-31 10:00:00,258 DEBUG Processing 411/532 atomic regions from SNP 123106 to 123706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,320 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155931)] 2025-01-31 10:00:00,427 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 10:00:00,451 DEBUG Processing 412/532 atomic regions from SNP 123406 to 124006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,639 DEBUG Processing 413/532 atomic regions from SNP 123706 to 124306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,840 DEBUG Processing 414/532 atomic regions from SNP 124006 to 124606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,026 DEBUG Processing 415/532 atomic regions from SNP 124306 to 124906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,213 DEBUG Processing 416/532 atomic regions from SNP 124606 to 125206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,398 DEBUG Processing 417/532 atomic regions from SNP 124906 to 125506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,585 DEBUG Processing 418/532 atomic regions from SNP 125206 to 125806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,781 DEBUG Processing 419/532 atomic regions from SNP 125506 to 126106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,973 DEBUG Processing 420/532 atomic regions from SNP 125806 to 126406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,192 DEBUG Processing 421/532 atomic regions from SNP 126106 to 126706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,403 DEBUG Processing 422/532 atomic regions from SNP 126406 to 127006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,602 DEBUG Processing 423/532 atomic regions from SNP 126706 to 127306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,812 DEBUG Processing 424/532 atomic regions from SNP 127006 to 127606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,027 DEBUG Processing 425/532 atomic regions from SNP 127306 to 127906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,168 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 10:00:03,169 DEBUG chr19: Signal quantile: 0.985. signal threshold: 13. Best RMSEA: 0.010 2025-01-31 10:00:03,224 DEBUG Processing 426/532 atomic regions from SNP 127606 to 128206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,414 DEBUG Processing 427/532 atomic regions from SNP 127906 to 128506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,610 DEBUG Processing 428/532 atomic regions from SNP 128206 to 128806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,808 DEBUG Processing 429/532 atomic regions from SNP 128506 to 129106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,998 DEBUG Processing 430/532 atomic regions from SNP 128806 to 129406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,186 DEBUG Processing 431/532 atomic regions from SNP 129106 to 129706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,297 DEBUG chr19 total SNP count: 104569 2025-01-31 10:00:04,297 DEBUG chr19 length: 61431566 2025-01-31 10:00:04,297 DEBUG ----------------------------------------- 2025-01-31 10:00:04,297 INFO Processing SNPs in chr19 2025-01-31 10:00:04,389 DEBUG Processing 432/532 atomic regions from SNP 129406 to 130006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,400 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 104569)] 2025-01-31 10:00:04,470 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 10:00:04,571 DEBUG Processing 433/532 atomic regions from SNP 129706 to 130306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,775 DEBUG Processing 434/532 atomic regions from SNP 130006 to 130606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,972 DEBUG Processing 435/532 atomic regions from SNP 130306 to 130906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,159 DEBUG Processing 436/532 atomic regions from SNP 130606 to 131206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,353 DEBUG Processing 437/532 atomic regions from SNP 130906 to 131506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,542 DEBUG Processing 438/532 atomic regions from SNP 131206 to 131806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,732 DEBUG Processing 439/532 atomic regions from SNP 131506 to 132106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,913 DEBUG Processing 440/532 atomic regions from SNP 131806 to 132406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,096 DEBUG Processing 441/532 atomic regions from SNP 132106 to 132706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,274 DEBUG Processing 442/532 atomic regions from SNP 132406 to 133006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,455 DEBUG Processing 443/532 atomic regions from SNP 132706 to 133306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,633 DEBUG Processing 444/532 atomic regions from SNP 133006 to 133606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,831 DEBUG Processing 445/532 atomic regions from SNP 133306 to 133906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,045 DEBUG Processing 446/532 atomic regions from SNP 133606 to 134206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,248 DEBUG Processing 447/532 atomic regions from SNP 133906 to 134506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,449 DEBUG Processing 448/532 atomic regions from SNP 134206 to 134806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,651 DEBUG Processing 449/532 atomic regions from SNP 134506 to 135106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,833 DEBUG Processing 450/532 atomic regions from SNP 134806 to 135406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,016 DEBUG Processing 451/532 atomic regions from SNP 135106 to 135706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,203 DEBUG Processing 452/532 atomic regions from SNP 135406 to 136006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,378 DEBUG Processing 453/532 atomic regions from SNP 135706 to 136306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,558 DEBUG Processing 454/532 atomic regions from SNP 136006 to 136606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,741 DEBUG Processing 455/532 atomic regions from SNP 136306 to 136906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,935 DEBUG Processing 456/532 atomic regions from SNP 136606 to 137206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,131 DEBUG Processing 457/532 atomic regions from SNP 136906 to 137506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,325 DEBUG Processing 458/532 atomic regions from SNP 137206 to 137806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,506 DEBUG Processing 459/532 atomic regions from SNP 137506 to 138106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,693 DEBUG Processing 460/532 atomic regions from SNP 137806 to 138406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,898 DEBUG Processing 461/532 atomic regions from SNP 138106 to 138706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,100 DEBUG Processing 462/532 atomic regions from SNP 138406 to 139006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,282 DEBUG Processing 463/532 atomic regions from SNP 138706 to 139306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,480 DEBUG Processing 464/532 atomic regions from SNP 139006 to 139606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,665 DEBUG Processing 465/532 atomic regions from SNP 139306 to 139906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,844 DEBUG Processing 466/532 atomic regions from SNP 139606 to 140206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,035 DEBUG Processing 467/532 atomic regions from SNP 139906 to 140506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,234 DEBUG Processing 468/532 atomic regions from SNP 140206 to 140806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,435 DEBUG Processing 469/532 atomic regions from SNP 140506 to 141106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,641 DEBUG Processing 470/532 atomic regions from SNP 140806 to 141406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,830 DEBUG Processing 471/532 atomic regions from SNP 141106 to 141706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,007 DEBUG Processing 472/532 atomic regions from SNP 141406 to 142006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,183 DEBUG Processing 473/532 atomic regions from SNP 141706 to 142306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,362 DEBUG Processing 474/532 atomic regions from SNP 142006 to 142606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,566 DEBUG Processing 475/532 atomic regions from SNP 142306 to 142906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,744 DEBUG Processing 476/532 atomic regions from SNP 142606 to 143206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,918 DEBUG Processing 477/532 atomic regions from SNP 142906 to 143506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,095 DEBUG Processing 478/532 atomic regions from SNP 143206 to 143806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,284 DEBUG Processing 479/532 atomic regions from SNP 143506 to 144106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,462 DEBUG Processing 480/532 atomic regions from SNP 143806 to 144406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,638 DEBUG Processing 481/532 atomic regions from SNP 144106 to 144706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,821 DEBUG Processing 482/532 atomic regions from SNP 144406 to 145006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,025 DEBUG Processing 483/532 atomic regions from SNP 144706 to 145306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,226 DEBUG Processing 484/532 atomic regions from SNP 145006 to 145606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,421 DEBUG Processing 485/532 atomic regions from SNP 145306 to 145906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,601 DEBUG Processing 486/532 atomic regions from SNP 145606 to 146206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,779 DEBUG Processing 487/532 atomic regions from SNP 145906 to 146506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,964 DEBUG Processing 488/532 atomic regions from SNP 146206 to 146806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,148 DEBUG Processing 489/532 atomic regions from SNP 146506 to 147106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,346 DEBUG Processing 490/532 atomic regions from SNP 146806 to 147406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,532 DEBUG Processing 491/532 atomic regions from SNP 147106 to 147706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,712 DEBUG Processing 492/532 atomic regions from SNP 147406 to 148006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,903 DEBUG Processing 493/532 atomic regions from SNP 147706 to 148306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,092 DEBUG Processing 494/532 atomic regions from SNP 148006 to 148606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,269 DEBUG Processing 495/532 atomic regions from SNP 148306 to 148906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,444 DEBUG Processing 496/532 atomic regions from SNP 148606 to 149206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,627 DEBUG Processing 497/532 atomic regions from SNP 148906 to 149506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,810 DEBUG Processing 498/532 atomic regions from SNP 149206 to 149806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,892 DEBUG Segmenting atomic regions: 2025-01-31 10:00:16,937 DEBUG Processing 1/347 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,985 DEBUG Processing 499/532 atomic regions from SNP 149506 to 150106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,115 DEBUG Processing 2/347 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,159 DEBUG Processing 500/532 atomic regions from SNP 149806 to 150406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,283 DEBUG Processing 3/347 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,335 DEBUG Processing 501/532 atomic regions from SNP 150106 to 150706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,462 DEBUG Processing 4/347 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,511 DEBUG Processing 502/532 atomic regions from SNP 150406 to 151006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,639 DEBUG Processing 5/347 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,689 DEBUG Processing 503/532 atomic regions from SNP 150706 to 151306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,825 DEBUG Processing 6/347 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,867 DEBUG Processing 504/532 atomic regions from SNP 151006 to 151606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,011 DEBUG Processing 7/347 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,044 DEBUG Processing 505/532 atomic regions from SNP 151306 to 151906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,193 DEBUG Processing 8/347 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,224 DEBUG Processing 506/532 atomic regions from SNP 151606 to 152206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,370 DEBUG Processing 9/347 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,407 DEBUG Processing 507/532 atomic regions from SNP 151906 to 152506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,552 DEBUG Processing 10/347 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,588 DEBUG Processing 508/532 atomic regions from SNP 152206 to 152806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,733 DEBUG Processing 11/347 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,772 DEBUG Processing 509/532 atomic regions from SNP 152506 to 153106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,913 DEBUG Processing 12/347 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,961 DEBUG Processing 510/532 atomic regions from SNP 152806 to 153406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,029 DEBUG Segmenting atomic regions: 2025-01-31 10:00:19,096 DEBUG Processing 1/518 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,105 DEBUG Processing 13/347 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,148 DEBUG Processing 511/532 atomic regions from SNP 153106 to 153706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,279 DEBUG Processing 2/518 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,287 DEBUG Processing 14/347 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,332 DEBUG Processing 512/532 atomic regions from SNP 153406 to 154006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,457 DEBUG Processing 3/518 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,475 DEBUG Processing 15/347 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,519 DEBUG Processing 513/532 atomic regions from SNP 153706 to 154306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,641 DEBUG Processing 4/518 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,666 DEBUG Processing 16/347 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,702 DEBUG Processing 514/532 atomic regions from SNP 154006 to 154606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,819 DEBUG Processing 5/518 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,858 DEBUG Processing 17/347 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,886 DEBUG Processing 515/532 atomic regions from SNP 154306 to 154906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,012 DEBUG Processing 6/518 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,062 DEBUG Processing 18/347 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,076 DEBUG Processing 516/532 atomic regions from SNP 154606 to 155206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,190 DEBUG Processing 7/518 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,255 DEBUG Processing 19/347 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,261 DEBUG Processing 517/532 atomic regions from SNP 154906 to 155506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,367 DEBUG Processing 8/518 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,446 DEBUG Processing 518/532 atomic regions from SNP 155206 to 155806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,450 DEBUG Processing 20/347 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,546 DEBUG Processing 9/518 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,631 DEBUG Processing 519/532 atomic regions from SNP 155506 to 156106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,643 DEBUG Processing 21/347 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,733 DEBUG Processing 10/518 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,813 DEBUG Processing 520/532 atomic regions from SNP 155806 to 156406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,829 DEBUG Processing 22/347 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,920 DEBUG Processing 11/518 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,991 DEBUG Processing 521/532 atomic regions from SNP 156106 to 156706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,007 DEBUG Processing 23/347 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,115 DEBUG Processing 12/518 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,170 DEBUG Processing 522/532 atomic regions from SNP 156406 to 157006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,197 DEBUG Processing 24/347 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,304 DEBUG Processing 13/518 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,355 DEBUG Processing 523/532 atomic regions from SNP 156706 to 157306 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,389 DEBUG Processing 25/347 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,490 DEBUG Processing 14/518 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,536 DEBUG Processing 524/532 atomic regions from SNP 157006 to 157606 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,576 DEBUG Processing 26/347 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,678 DEBUG Processing 15/518 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,715 DEBUG Processing 525/532 atomic regions from SNP 157306 to 157906 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,758 DEBUG Processing 27/347 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,874 DEBUG Processing 16/518 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,905 DEBUG Processing 526/532 atomic regions from SNP 157606 to 158206 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,928 DEBUG Processing 28/347 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,061 DEBUG Processing 17/518 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,085 DEBUG Processing 29/347 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,086 DEBUG Processing 527/532 atomic regions from SNP 157906 to 158506 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,244 DEBUG Processing 30/347 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,245 DEBUG Processing 18/518 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,267 DEBUG Processing 528/532 atomic regions from SNP 158206 to 158806 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,403 DEBUG Processing 31/347 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,429 DEBUG Processing 19/518 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,449 DEBUG Processing 529/532 atomic regions from SNP 158506 to 159106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,559 DEBUG Processing 32/347 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,611 DEBUG Processing 20/518 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,630 DEBUG Processing 530/532 atomic regions from SNP 158806 to 159406 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,730 DEBUG Processing 33/347 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,799 DEBUG Processing 21/518 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,811 DEBUG Processing 531/532 atomic regions from SNP 159106 to 159706 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,918 DEBUG Processing 34/347 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,980 DEBUG Processing 22/518 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,990 DEBUG Processing 532/532 atomic regions from SNP 159406 to 160006 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,106 DEBUG Unique SNPs positions in subchromosome 1: 160007 2025-01-31 10:00:23,108 DEBUG Processing 35/347 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,164 DEBUG Processing 23/518 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,280 DEBUG Processing 36/347 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,342 DEBUG Processing 24/518 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,431 DEBUG Processing 37/347 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,520 DEBUG Processing 25/518 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,583 DEBUG Processing 38/347 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,697 DEBUG Processing 26/518 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,755 DEBUG Processing 39/347 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,873 DEBUG Processing 27/518 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,938 DEBUG Processing 40/347 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,047 DEBUG Processing 28/518 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,133 DEBUG Processing 41/347 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,232 DEBUG Processing 29/518 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,313 DEBUG Processing 42/347 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,411 DEBUG Processing 30/518 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,491 DEBUG Processing 43/347 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,582 DEBUG Processing 31/518 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,661 DEBUG Processing 44/347 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,752 DEBUG Processing 32/518 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,842 DEBUG Processing 45/347 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,931 DEBUG Processing 33/518 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,006 DEBUG Processing 46/347 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,100 DEBUG Processing 34/518 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,159 DEBUG Processing 47/347 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,273 DEBUG Processing 35/518 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,309 DEBUG Processing 48/347 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,446 DEBUG Processing 36/518 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,469 DEBUG Processing 49/347 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,619 DEBUG Processing 50/347 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,620 DEBUG Processing 37/518 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,774 DEBUG Processing 51/347 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,792 DEBUG Processing 38/518 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,945 DEBUG Processing 52/347 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,965 DEBUG Processing 39/518 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,095 DEBUG Processing 53/347 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,138 DEBUG Processing 40/518 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,247 DEBUG Processing 54/347 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,324 DEBUG Processing 41/518 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,404 DEBUG Processing 55/347 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,497 DEBUG Processing 42/518 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,553 DEBUG Processing 56/347 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,668 DEBUG Processing 43/518 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,703 DEBUG Processing 57/347 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,855 DEBUG Processing 58/347 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,863 DEBUG Processing 44/518 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,008 DEBUG Processing 59/347 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,050 DEBUG Processing 45/518 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,160 DEBUG Processing 60/347 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,220 DEBUG Processing 46/518 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,311 DEBUG Processing 61/347 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,391 DEBUG Processing 47/518 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,459 DEBUG Processing 62/347 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,560 DEBUG Processing 48/518 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,608 DEBUG Processing 63/347 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,731 DEBUG Processing 49/518 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,759 DEBUG Processing 64/347 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,901 DEBUG Processing 50/518 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,910 DEBUG Processing 65/347 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,063 DEBUG Processing 66/347 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,081 DEBUG Processing 51/518 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,224 DEBUG Processing 67/347 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,264 DEBUG Processing 52/518 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,370 DEBUG Processing 68/347 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,435 DEBUG Processing 53/518 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,518 DEBUG Processing 69/347 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,613 DEBUG Processing 54/518 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,669 DEBUG Processing 70/347 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,785 DEBUG Processing 55/518 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,823 DEBUG Processing 71/347 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,955 DEBUG Processing 56/518 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,975 DEBUG Processing 72/347 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,126 DEBUG Processing 73/347 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,127 DEBUG Processing 57/518 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,275 DEBUG Processing 74/347 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,300 DEBUG Processing 58/518 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,433 DEBUG Processing 75/347 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,471 DEBUG Processing 59/518 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,590 DEBUG Processing 76/347 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,641 DEBUG Processing 60/518 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,742 DEBUG Processing 77/347 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,811 DEBUG Processing 61/518 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,891 DEBUG Processing 78/347 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,982 DEBUG Processing 62/518 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,041 DEBUG Processing 79/347 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,154 DEBUG Processing 63/518 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,189 DEBUG Processing 80/347 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,325 DEBUG Processing 64/518 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,337 DEBUG Processing 81/347 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,487 DEBUG Processing 82/347 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,499 DEBUG Processing 65/518 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,643 DEBUG Processing 83/347 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,672 DEBUG Processing 66/518 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,796 DEBUG Processing 84/347 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,847 DEBUG Processing 67/518 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,947 DEBUG Processing 85/347 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,020 DEBUG Processing 68/518 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,096 DEBUG Processing 86/347 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,193 DEBUG Processing 69/518 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,243 DEBUG Processing 87/347 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,364 DEBUG Processing 70/518 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,392 DEBUG Processing 88/347 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,540 DEBUG Processing 71/518 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,545 DEBUG Processing 89/347 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,697 DEBUG Processing 90/347 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,715 DEBUG Processing 72/518 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,735 DEBUG Subchromosome time: 134.77687607402913, subchromosome SNPs: 160007 2025-01-31 10:00:31,735 DEBUG Estimated BADs: [1.61, 0.80, 0.23, 0.80, 4.83, 3.22, 4.83, 0.54, 1.61, 4.83, 0.80, 6.44, 0.54, 1.61, 0.40, 1.61, 0.40, 1.61, 3.22, 0.32] SNP counts: [20867, 3124, 4394, 4378, 10963, 8108, 5726, 11646, 2434, 5851, 12793, 2725, 7091, 26084, 3302, 6292, 2112, 2412, 9910, 9795] SNP IDs counts: [20867, 3124, 4394, 4378, 10963, 8108, 5726, 11646, 2434, 5851, 12793, 2725, 7091, 26084, 3302, 6292, 2112, 2412, 9910, 9795] Critical gap: 527413bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.86Mbp, 17.87Mbp, 20.53Mbp, 23.53Mbp, 29.35Mbp, 33.81Mbp, 37.09Mbp, 44.20Mbp, 45.50Mbp, 48.60Mbp, 55.93Mbp, 57.36Mbp, 61.54Mbp, 75.96Mbp, 77.86Mbp, 81.28Mbp, 82.50Mbp, 83.86Mbp, 89.13Mbp, 94.99Mbp] 2025-01-31 10:00:31,736 DEBUG chr17 time: 134.77739432104863 s 2025-01-31 10:00:31,848 DEBUG chr17: Fitting background model for 20 segments 2025-01-31 10:00:31,860 DEBUG Processing 91/347 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,890 DEBUG Processing 73/518 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,013 DEBUG Processing 92/347 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,065 DEBUG Processing 74/518 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,170 DEBUG Processing 93/347 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,240 DEBUG Processing 75/518 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,319 DEBUG Processing 94/347 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,411 DEBUG Processing 76/518 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,469 DEBUG Processing 95/347 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,584 DEBUG Processing 77/518 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,621 DEBUG Processing 96/347 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,758 DEBUG Processing 78/518 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,774 DEBUG Processing 97/347 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,931 DEBUG Processing 98/347 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,933 DEBUG Processing 79/518 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,090 DEBUG Processing 99/347 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,110 DEBUG Processing 80/518 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,245 DEBUG Processing 100/347 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,286 DEBUG Processing 81/518 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,395 DEBUG Processing 101/347 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,462 DEBUG Processing 82/518 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,542 DEBUG Processing 102/347 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,635 DEBUG Processing 83/518 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,691 DEBUG Processing 103/347 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,806 DEBUG Processing 84/518 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,840 DEBUG Processing 104/347 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,977 DEBUG Processing 85/518 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,990 DEBUG Processing 105/347 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,152 DEBUG Processing 86/518 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,154 DEBUG Processing 106/347 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,306 DEBUG Processing 107/347 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,327 DEBUG Processing 87/518 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,456 DEBUG Processing 108/347 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,502 DEBUG Processing 88/518 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,604 DEBUG Processing 109/347 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,674 DEBUG Processing 89/518 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,752 DEBUG Processing 110/347 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,845 DEBUG Processing 90/518 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,901 DEBUG Processing 111/347 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,017 DEBUG Processing 91/518 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,053 DEBUG Processing 112/347 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,187 DEBUG Processing 92/518 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,206 DEBUG Processing 113/347 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,357 DEBUG Processing 93/518 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,358 DEBUG Processing 114/347 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,508 DEBUG Processing 115/347 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,529 DEBUG Processing 94/518 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,657 DEBUG Processing 116/347 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,699 DEBUG Processing 95/518 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,818 DEBUG Processing 117/347 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,868 DEBUG Processing 96/518 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,992 DEBUG Processing 118/347 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,039 DEBUG Processing 97/518 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,139 DEBUG Processing 119/347 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,207 DEBUG Processing 98/518 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,288 DEBUG Processing 120/347 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,377 DEBUG Processing 99/518 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,435 DEBUG Processing 121/347 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,545 DEBUG Processing 100/518 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,583 DEBUG Processing 122/347 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,716 DEBUG Processing 101/518 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,734 DEBUG Processing 123/347 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,887 DEBUG Processing 124/347 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,888 DEBUG Processing 102/518 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,045 DEBUG Processing 125/347 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,068 DEBUG Processing 103/518 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,222 DEBUG Processing 126/347 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,252 DEBUG Processing 104/518 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,388 DEBUG Processing 127/347 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,449 DEBUG Processing 105/518 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,537 DEBUG Processing 128/347 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,635 DEBUG Processing 106/518 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,685 DEBUG Processing 129/347 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,813 DEBUG Processing 107/518 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,835 DEBUG Processing 130/347 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,984 DEBUG Processing 108/518 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,986 DEBUG Processing 131/347 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,137 DEBUG Processing 132/347 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,157 DEBUG Processing 109/518 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,288 DEBUG Processing 133/347 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,333 DEBUG Processing 110/518 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,435 DEBUG Processing 134/347 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,504 DEBUG Processing 111/518 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,585 DEBUG Processing 135/347 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,676 DEBUG Processing 112/518 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,740 DEBUG Processing 136/347 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,849 DEBUG Processing 113/518 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,891 DEBUG Processing 137/347 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,022 DEBUG Processing 114/518 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,042 DEBUG Processing 138/347 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,191 DEBUG Processing 115/518 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,192 DEBUG Processing 139/347 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,348 DEBUG Processing 140/347 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,366 DEBUG Processing 116/518 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,495 DEBUG Processing 141/347 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,536 DEBUG Processing 117/518 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,641 DEBUG Processing 142/347 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,706 DEBUG Processing 118/518 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,786 DEBUG Processing 143/347 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,874 DEBUG Processing 119/518 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,933 DEBUG Processing 144/347 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,043 DEBUG Processing 120/518 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,078 DEBUG Processing 145/347 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,218 DEBUG Processing 121/518 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,228 DEBUG Processing 146/347 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,376 DEBUG Processing 147/347 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,405 DEBUG Processing 122/518 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,523 DEBUG Processing 148/347 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,609 DEBUG Processing 123/518 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,879 DEBUG Processing 149/347 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,945 DEBUG Processing 124/518 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,025 DEBUG Processing 150/347 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,123 DEBUG Processing 125/518 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,188 DEBUG Processing 151/347 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,309 DEBUG Processing 126/518 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,334 DEBUG Processing 152/347 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,483 DEBUG Processing 127/518 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,487 DEBUG Processing 153/347 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,652 DEBUG Processing 128/518 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,658 DEBUG Processing 154/347 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,819 DEBUG Processing 155/347 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,828 DEBUG Processing 129/518 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,082 DEBUG Processing 156/347 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,104 DEBUG Processing 130/518 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,260 DEBUG Processing 157/347 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,287 DEBUG Processing 131/518 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,428 DEBUG Processing 158/347 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,469 DEBUG Processing 132/518 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,588 DEBUG Processing 159/347 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,655 DEBUG Processing 133/518 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,748 DEBUG Processing 160/347 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,836 DEBUG Processing 134/518 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,913 DEBUG Processing 161/347 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,028 DEBUG Processing 135/518 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,081 DEBUG Processing 162/347 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,245 DEBUG Processing 136/518 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,269 DEBUG Processing 163/347 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,425 DEBUG Processing 137/518 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,426 DEBUG Processing 164/347 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,584 DEBUG Processing 165/347 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,605 DEBUG Processing 138/518 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,739 DEBUG Processing 166/347 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,783 DEBUG Processing 139/518 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,894 DEBUG Processing 167/347 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,962 DEBUG Processing 140/518 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,047 DEBUG Processing 168/347 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,138 DEBUG Processing 141/518 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,197 DEBUG Processing 169/347 atomic regions from SNP 50568 to 51168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,311 DEBUG Processing 142/518 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,347 DEBUG Processing 170/347 atomic regions from SNP 50868 to 51468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,482 DEBUG Processing 143/518 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,495 DEBUG Processing 171/347 atomic regions from SNP 51168 to 51768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,644 DEBUG Processing 172/347 atomic regions from SNP 51468 to 52068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,653 DEBUG Processing 144/518 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,815 DEBUG Processing 173/347 atomic regions from SNP 51768 to 52368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,829 DEBUG Processing 145/518 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,990 DEBUG Processing 174/347 atomic regions from SNP 52068 to 52668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,000 DEBUG Processing 146/518 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,162 DEBUG Processing 175/347 atomic regions from SNP 52368 to 52968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,175 DEBUG Processing 147/518 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,316 DEBUG Processing 176/347 atomic regions from SNP 52668 to 53268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,348 DEBUG Processing 148/518 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,466 DEBUG Processing 177/347 atomic regions from SNP 52968 to 53568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,520 DEBUG Processing 149/518 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,615 DEBUG Processing 178/347 atomic regions from SNP 53268 to 53868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,691 DEBUG Processing 150/518 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,763 DEBUG Processing 179/347 atomic regions from SNP 53568 to 54168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,860 DEBUG Processing 151/518 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,915 DEBUG Processing 180/347 atomic regions from SNP 53868 to 54468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,033 DEBUG Processing 152/518 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,069 DEBUG Processing 181/347 atomic regions from SNP 54168 to 54768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,209 DEBUG Processing 153/518 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,230 DEBUG Processing 182/347 atomic regions from SNP 54468 to 55068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,387 DEBUG Processing 154/518 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,391 DEBUG Processing 183/347 atomic regions from SNP 54768 to 55368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,548 DEBUG Processing 184/347 atomic regions from SNP 55068 to 55668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,564 DEBUG Processing 155/518 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,716 DEBUG Processing 185/347 atomic regions from SNP 55368 to 55968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,738 DEBUG Processing 156/518 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,870 DEBUG Processing 186/347 atomic regions from SNP 55668 to 56268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,912 DEBUG Processing 157/518 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,024 DEBUG Processing 187/347 atomic regions from SNP 55968 to 56568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,087 DEBUG Processing 158/518 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,178 DEBUG Processing 188/347 atomic regions from SNP 56268 to 56868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,262 DEBUG Processing 159/518 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,333 DEBUG Processing 189/347 atomic regions from SNP 56568 to 57168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,442 DEBUG Processing 160/518 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,496 DEBUG Processing 190/347 atomic regions from SNP 56868 to 57468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,619 DEBUG Processing 161/518 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,656 DEBUG Processing 191/347 atomic regions from SNP 57168 to 57768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,799 DEBUG Processing 162/518 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,823 DEBUG Processing 192/347 atomic regions from SNP 57468 to 58068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,975 DEBUG Processing 163/518 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,983 DEBUG Processing 193/347 atomic regions from SNP 57768 to 58368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,143 DEBUG Processing 194/347 atomic regions from SNP 58068 to 58668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,155 DEBUG Processing 164/518 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,298 DEBUG Processing 195/347 atomic regions from SNP 58368 to 58968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,335 DEBUG Processing 165/518 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,453 DEBUG Processing 196/347 atomic regions from SNP 58668 to 59268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,513 DEBUG Processing 166/518 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,616 DEBUG Processing 197/347 atomic regions from SNP 58968 to 59568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,697 DEBUG Processing 167/518 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,774 DEBUG Processing 198/347 atomic regions from SNP 59268 to 59868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,887 DEBUG Processing 168/518 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,930 DEBUG Processing 199/347 atomic regions from SNP 59568 to 60168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,084 DEBUG Processing 169/518 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,093 DEBUG Processing 200/347 atomic regions from SNP 59868 to 60468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,249 DEBUG Processing 201/347 atomic regions from SNP 60168 to 60768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,276 DEBUG Processing 170/518 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,423 DEBUG Processing 202/347 atomic regions from SNP 60468 to 61068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,459 DEBUG Processing 171/518 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,600 DEBUG Processing 203/347 atomic regions from SNP 60768 to 61368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,637 DEBUG Processing 172/518 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,762 DEBUG Processing 204/347 atomic regions from SNP 61068 to 61668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,834 DEBUG Processing 173/518 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,921 DEBUG Processing 205/347 atomic regions from SNP 61368 to 61968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,013 DEBUG Processing 174/518 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,081 DEBUG Processing 206/347 atomic regions from SNP 61668 to 62268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,185 DEBUG Processing 175/518 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,234 DEBUG Processing 207/347 atomic regions from SNP 61968 to 62568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,361 DEBUG Processing 176/518 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,388 DEBUG Processing 208/347 atomic regions from SNP 62268 to 62868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,540 DEBUG Processing 177/518 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,543 DEBUG Processing 209/347 atomic regions from SNP 62568 to 63168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,697 DEBUG Processing 210/347 atomic regions from SNP 62868 to 63468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,717 DEBUG Processing 178/518 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,849 DEBUG Processing 211/347 atomic regions from SNP 63168 to 63768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,893 DEBUG Processing 179/518 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,004 DEBUG Processing 212/347 atomic regions from SNP 63468 to 64068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,070 DEBUG Processing 180/518 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,157 DEBUG Processing 213/347 atomic regions from SNP 63768 to 64368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,246 DEBUG Processing 181/518 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,310 DEBUG Processing 214/347 atomic regions from SNP 64068 to 64668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,436 DEBUG Processing 182/518 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,470 DEBUG Processing 215/347 atomic regions from SNP 64368 to 64968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,627 DEBUG Processing 216/347 atomic regions from SNP 64668 to 65268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,629 DEBUG Processing 183/518 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,790 DEBUG Processing 217/347 atomic regions from SNP 64968 to 65568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,838 DEBUG Processing 184/518 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,947 DEBUG Processing 218/347 atomic regions from SNP 65268 to 65868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,045 DEBUG Processing 185/518 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,099 DEBUG Processing 219/347 atomic regions from SNP 65568 to 66168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,255 DEBUG Processing 186/518 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,256 DEBUG Processing 220/347 atomic regions from SNP 65868 to 66468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,431 DEBUG Processing 221/347 atomic regions from SNP 66168 to 66768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,467 DEBUG Processing 187/518 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,594 DEBUG Processing 222/347 atomic regions from SNP 66468 to 67068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,672 DEBUG Processing 188/518 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,765 DEBUG Processing 223/347 atomic regions from SNP 66768 to 67368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,859 DEBUG Processing 189/518 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,921 DEBUG Processing 224/347 atomic regions from SNP 67068 to 67668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,041 DEBUG Processing 190/518 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,076 DEBUG Processing 225/347 atomic regions from SNP 67368 to 67968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,231 DEBUG Processing 226/347 atomic regions from SNP 67668 to 68268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,247 DEBUG Processing 191/518 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,388 DEBUG Processing 227/347 atomic regions from SNP 67968 to 68568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,455 DEBUG Processing 192/518 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,560 DEBUG Processing 228/347 atomic regions from SNP 68268 to 68868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,665 DEBUG Processing 193/518 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,742 DEBUG Processing 229/347 atomic regions from SNP 68568 to 69168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,874 DEBUG Processing 194/518 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,923 DEBUG Processing 230/347 atomic regions from SNP 68868 to 69468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,076 DEBUG Processing 195/518 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,103 DEBUG Processing 231/347 atomic regions from SNP 69168 to 69768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,282 DEBUG Processing 232/347 atomic regions from SNP 69468 to 70068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,290 DEBUG Processing 196/518 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,451 DEBUG Processing 233/347 atomic regions from SNP 69768 to 70368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,502 DEBUG Processing 197/518 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,640 DEBUG Processing 234/347 atomic regions from SNP 70068 to 70668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,898 DEBUG Processing 198/518 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,956 DEBUG Processing 235/347 atomic regions from SNP 70368 to 70968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,134 DEBUG Processing 236/347 atomic regions from SNP 70668 to 71268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,138 DEBUG Processing 199/518 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,286 DEBUG Processing 237/347 atomic regions from SNP 70968 to 71568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,312 DEBUG Processing 200/518 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,440 DEBUG Processing 238/347 atomic regions from SNP 71268 to 71868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,486 DEBUG Processing 201/518 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,605 DEBUG Processing 239/347 atomic regions from SNP 71568 to 72168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,663 DEBUG Processing 202/518 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,786 DEBUG Processing 240/347 atomic regions from SNP 71868 to 72468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,839 DEBUG Processing 203/518 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,967 DEBUG Processing 241/347 atomic regions from SNP 72168 to 72768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,037 DEBUG Processing 204/518 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,170 DEBUG Processing 242/347 atomic regions from SNP 72468 to 73068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,295 DEBUG Processing 205/518 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,342 DEBUG Processing 243/347 atomic regions from SNP 72768 to 73368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,550 DEBUG Processing 206/518 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,570 DEBUG Processing 244/347 atomic regions from SNP 73068 to 73668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,781 DEBUG Processing 245/347 atomic regions from SNP 73368 to 73968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,794 DEBUG Processing 207/518 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,988 DEBUG Processing 246/347 atomic regions from SNP 73668 to 74268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,020 DEBUG Processing 208/518 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,188 DEBUG Processing 247/347 atomic regions from SNP 73968 to 74568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,246 DEBUG Processing 209/518 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,377 DEBUG Processing 248/347 atomic regions from SNP 74268 to 74868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,449 DEBUG Processing 210/518 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,581 DEBUG Processing 249/347 atomic regions from SNP 74568 to 75168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,643 DEBUG Processing 211/518 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,778 DEBUG Processing 250/347 atomic regions from SNP 74868 to 75468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,828 DEBUG Processing 212/518 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,953 DEBUG Processing 251/347 atomic regions from SNP 75168 to 75768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,012 DEBUG Processing 213/518 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,130 DEBUG Processing 252/347 atomic regions from SNP 75468 to 76068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,194 DEBUG Processing 214/518 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,321 DEBUG Processing 253/347 atomic regions from SNP 75768 to 76368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,413 DEBUG Processing 215/518 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,500 DEBUG Processing 254/347 atomic regions from SNP 76068 to 76668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,611 DEBUG Processing 216/518 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,670 DEBUG Processing 255/347 atomic regions from SNP 76368 to 76968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,783 DEBUG Processing 217/518 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,851 DEBUG Processing 256/347 atomic regions from SNP 76668 to 77268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,957 DEBUG Processing 218/518 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,026 DEBUG Processing 257/347 atomic regions from SNP 76968 to 77568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,137 DEBUG Processing 219/518 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,221 DEBUG Processing 258/347 atomic regions from SNP 77268 to 77868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,312 DEBUG Processing 220/518 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,416 DEBUG Processing 259/347 atomic regions from SNP 77568 to 78168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,493 DEBUG Processing 221/518 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,606 DEBUG Processing 260/347 atomic regions from SNP 77868 to 78468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,673 DEBUG Processing 222/518 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,790 DEBUG Processing 261/347 atomic regions from SNP 78168 to 78768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,849 DEBUG Processing 223/518 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,977 DEBUG Processing 262/347 atomic regions from SNP 78468 to 79068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,033 DEBUG Processing 224/518 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,156 DEBUG Processing 263/347 atomic regions from SNP 78768 to 79368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,222 DEBUG Processing 225/518 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,345 DEBUG Processing 264/347 atomic regions from SNP 79068 to 79668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,410 DEBUG Processing 226/518 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,525 DEBUG Processing 265/347 atomic regions from SNP 79368 to 79968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,599 DEBUG Processing 227/518 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,691 DEBUG Processing 266/347 atomic regions from SNP 79668 to 80268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,785 DEBUG Processing 228/518 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,854 DEBUG Processing 267/347 atomic regions from SNP 79968 to 80568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,974 DEBUG Processing 229/518 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,019 DEBUG Processing 268/347 atomic regions from SNP 80268 to 80868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,156 DEBUG Processing 230/518 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,184 DEBUG Processing 269/347 atomic regions from SNP 80568 to 81168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,349 DEBUG Processing 231/518 atomic regions from SNP 69230 to 69830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,353 DEBUG Processing 270/347 atomic regions from SNP 80868 to 81468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,543 DEBUG Processing 271/347 atomic regions from SNP 81168 to 81768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,556 DEBUG Processing 232/518 atomic regions from SNP 69530 to 70130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,715 DEBUG Processing 272/347 atomic regions from SNP 81468 to 82068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,750 DEBUG Processing 233/518 atomic regions from SNP 69830 to 70430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,883 DEBUG Processing 273/347 atomic regions from SNP 81768 to 82368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,941 DEBUG Processing 234/518 atomic regions from SNP 70130 to 70730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,049 DEBUG Processing 274/347 atomic regions from SNP 82068 to 82668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,125 DEBUG Processing 235/518 atomic regions from SNP 70430 to 71030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,212 DEBUG Processing 275/347 atomic regions from SNP 82368 to 82968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,313 DEBUG Processing 236/518 atomic regions from SNP 70730 to 71330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,379 DEBUG Processing 276/347 atomic regions from SNP 82668 to 83268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,500 DEBUG Processing 237/518 atomic regions from SNP 71030 to 71630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,548 DEBUG Processing 277/347 atomic regions from SNP 82968 to 83568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,697 DEBUG Processing 238/518 atomic regions from SNP 71330 to 71930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,724 DEBUG Processing 278/347 atomic regions from SNP 83268 to 83868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,885 DEBUG Processing 239/518 atomic regions from SNP 71630 to 72230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,895 DEBUG Processing 279/347 atomic regions from SNP 83568 to 84168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,086 DEBUG Processing 280/347 atomic regions from SNP 83868 to 84468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,087 DEBUG Processing 240/518 atomic regions from SNP 71930 to 72530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,265 DEBUG Processing 281/347 atomic regions from SNP 84168 to 84768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,282 DEBUG Processing 241/518 atomic regions from SNP 72230 to 72830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,475 DEBUG Processing 282/347 atomic regions from SNP 84468 to 85068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,513 DEBUG Processing 242/518 atomic regions from SNP 72530 to 73130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,683 DEBUG Processing 283/347 atomic regions from SNP 84768 to 85368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,726 DEBUG Processing 243/518 atomic regions from SNP 72830 to 73430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,863 DEBUG Processing 284/347 atomic regions from SNP 85068 to 85668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,921 DEBUG Processing 244/518 atomic regions from SNP 73130 to 73730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,051 DEBUG Processing 285/347 atomic regions from SNP 85368 to 85968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,151 DEBUG Processing 245/518 atomic regions from SNP 73430 to 74030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,235 DEBUG Processing 286/347 atomic regions from SNP 85668 to 86268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,363 DEBUG Processing 246/518 atomic regions from SNP 73730 to 74330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,438 DEBUG Processing 287/347 atomic regions from SNP 85968 to 86568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,585 DEBUG Processing 247/518 atomic regions from SNP 74030 to 74630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,642 DEBUG Processing 288/347 atomic regions from SNP 86268 to 86868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,832 DEBUG Processing 248/518 atomic regions from SNP 74330 to 74930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,879 DEBUG Processing 289/347 atomic regions from SNP 86568 to 87168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,046 DEBUG Processing 249/518 atomic regions from SNP 74630 to 75230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,068 DEBUG Processing 290/347 atomic regions from SNP 86868 to 87468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,243 DEBUG Processing 250/518 atomic regions from SNP 74930 to 75530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,252 DEBUG Processing 291/347 atomic regions from SNP 87168 to 87768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,427 DEBUG Processing 292/347 atomic regions from SNP 87468 to 88068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,437 DEBUG Processing 251/518 atomic regions from SNP 75230 to 75830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,648 DEBUG Processing 293/347 atomic regions from SNP 87768 to 88368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,673 DEBUG Processing 252/518 atomic regions from SNP 75530 to 76130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,885 DEBUG Processing 294/347 atomic regions from SNP 88068 to 88668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,923 DEBUG Processing 253/518 atomic regions from SNP 75830 to 76430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,128 DEBUG Processing 295/347 atomic regions from SNP 88368 to 88968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,163 DEBUG Processing 254/518 atomic regions from SNP 76130 to 76730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,328 DEBUG Processing 296/347 atomic regions from SNP 88668 to 89268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,404 DEBUG Processing 255/518 atomic regions from SNP 76430 to 77030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,573 DEBUG Processing 297/347 atomic regions from SNP 88968 to 89568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,765 DEBUG Processing 256/518 atomic regions from SNP 76730 to 77330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,851 DEBUG Processing 298/347 atomic regions from SNP 89268 to 89868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,988 DEBUG Processing 257/518 atomic regions from SNP 77030 to 77630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,058 DEBUG Processing 299/347 atomic regions from SNP 89568 to 90168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,185 DEBUG Processing 258/518 atomic regions from SNP 77330 to 77930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,284 DEBUG Processing 300/347 atomic regions from SNP 89868 to 90468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,413 DEBUG Processing 259/518 atomic regions from SNP 77630 to 78230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,489 DEBUG Processing 301/347 atomic regions from SNP 90168 to 90768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,602 DEBUG Processing 260/518 atomic regions from SNP 77930 to 78530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,679 DEBUG Processing 302/347 atomic regions from SNP 90468 to 91068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,809 DEBUG Processing 261/518 atomic regions from SNP 78230 to 78830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,923 DEBUG Processing 303/347 atomic regions from SNP 90768 to 91368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,115 DEBUG Processing 262/518 atomic regions from SNP 78530 to 79130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:08,150 DEBUG Processing 304/347 atomic regions from SNP 91068 to 91668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,344 DEBUG Processing 263/518 atomic regions from SNP 78830 to 79430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:08,368 DEBUG Processing 305/347 atomic regions from SNP 91368 to 91968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,540 DEBUG Processing 264/518 atomic regions from SNP 79130 to 79730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:08,547 DEBUG Processing 306/347 atomic regions from SNP 91668 to 92268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,784 DEBUG Processing 307/347 atomic regions from SNP 91968 to 92568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,801 DEBUG Processing 265/518 atomic regions from SNP 79430 to 80030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:09,050 DEBUG Processing 308/347 atomic regions from SNP 92268 to 92868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,079 DEBUG Processing 266/518 atomic regions from SNP 79730 to 80330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:09,225 DEBUG Processing 309/347 atomic regions from SNP 92568 to 93168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,269 DEBUG Processing 267/518 atomic regions from SNP 80030 to 80630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:09,426 DEBUG Processing 310/347 atomic regions from SNP 92868 to 93468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,491 DEBUG Processing 268/518 atomic regions from SNP 80330 to 80930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:09,683 DEBUG Processing 311/347 atomic regions from SNP 93168 to 93768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,759 DEBUG Processing 269/518 atomic regions from SNP 80630 to 81230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,043 DEBUG Processing 312/347 atomic regions from SNP 93468 to 94068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,073 DEBUG Processing 270/518 atomic regions from SNP 80930 to 81530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,210 DEBUG Processing 313/347 atomic regions from SNP 93768 to 94368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,264 DEBUG Processing 271/518 atomic regions from SNP 81230 to 81830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,383 DEBUG Processing 314/347 atomic regions from SNP 94068 to 94668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,459 DEBUG Processing 272/518 atomic regions from SNP 81530 to 82130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,555 DEBUG Processing 315/347 atomic regions from SNP 94368 to 94968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,686 DEBUG Processing 273/518 atomic regions from SNP 81830 to 82430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,858 DEBUG Processing 316/347 atomic regions from SNP 94668 to 95268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,994 DEBUG Processing 274/518 atomic regions from SNP 82130 to 82730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,224 DEBUG Processing 317/347 atomic regions from SNP 94968 to 95568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,380 DEBUG Processing 275/518 atomic regions from SNP 82430 to 83030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,454 DEBUG Processing 318/347 atomic regions from SNP 95268 to 95868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,580 DEBUG Processing 276/518 atomic regions from SNP 82730 to 83330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,649 DEBUG Processing 319/347 atomic regions from SNP 95568 to 96168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,788 DEBUG Processing 277/518 atomic regions from SNP 83030 to 83630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,906 DEBUG Processing 320/347 atomic regions from SNP 95868 to 96468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,055 DEBUG Processing 278/518 atomic regions from SNP 83330 to 83930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:12,086 DEBUG Processing 321/347 atomic regions from SNP 96168 to 96768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,241 DEBUG Processing 279/518 atomic regions from SNP 83630 to 84230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:12,259 DEBUG Processing 322/347 atomic regions from SNP 96468 to 97068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,480 DEBUG Processing 323/347 atomic regions from SNP 96768 to 97368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,493 DEBUG Processing 280/518 atomic regions from SNP 83930 to 84530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:12,838 DEBUG Processing 324/347 atomic regions from SNP 97068 to 97668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,861 DEBUG Processing 281/518 atomic regions from SNP 84230 to 84830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,061 DEBUG Processing 325/347 atomic regions from SNP 97368 to 97968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,159 DEBUG Processing 282/518 atomic regions from SNP 84530 to 85130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,372 DEBUG Processing 326/347 atomic regions from SNP 97668 to 98268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,492 DEBUG Processing 283/518 atomic regions from SNP 84830 to 85430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,547 DEBUG Processing 327/347 atomic regions from SNP 97968 to 98568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,716 DEBUG Processing 284/518 atomic regions from SNP 85130 to 85730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,860 DEBUG Processing 328/347 atomic regions from SNP 98268 to 98868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,408 DEBUG Processing 285/518 atomic regions from SNP 85430 to 86030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:14,475 DEBUG Processing 329/347 atomic regions from SNP 98568 to 99168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,947 DEBUG Processing 330/347 atomic regions from SNP 98868 to 99468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,970 DEBUG Processing 286/518 atomic regions from SNP 85730 to 86330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:15,607 DEBUG Processing 331/347 atomic regions from SNP 99168 to 99768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,678 DEBUG Processing 287/518 atomic regions from SNP 86030 to 86630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,057 DEBUG Processing 332/347 atomic regions from SNP 99468 to 100068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,105 DEBUG Processing 288/518 atomic regions from SNP 86330 to 86930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,371 DEBUG Processing 333/347 atomic regions from SNP 99768 to 100368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,444 DEBUG Processing 289/518 atomic regions from SNP 86630 to 87230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,641 DEBUG Processing 334/347 atomic regions from SNP 100068 to 100668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,694 DEBUG Processing 290/518 atomic regions from SNP 86930 to 87530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,910 DEBUG Processing 335/347 atomic regions from SNP 100368 to 100968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:17,050 DEBUG Processing 291/518 atomic regions from SNP 87230 to 87830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:17,325 DEBUG Processing 336/347 atomic regions from SNP 100668 to 101268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:17,523 DEBUG Processing 292/518 atomic regions from SNP 87530 to 88130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,001 DEBUG Processing 337/347 atomic regions from SNP 100968 to 101568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:18,314 DEBUG Processing 293/518 atomic regions from SNP 87830 to 88430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,360 DEBUG Processing 338/347 atomic regions from SNP 101268 to 101868 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:18,594 DEBUG Processing 339/347 atomic regions from SNP 101568 to 102168 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:18,599 DEBUG Processing 294/518 atomic regions from SNP 88130 to 88730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,762 DEBUG Processing 340/347 atomic regions from SNP 101868 to 102468 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:18,784 DEBUG Processing 295/518 atomic regions from SNP 88430 to 89030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,928 DEBUG Processing 341/347 atomic regions from SNP 102168 to 102768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:18,985 DEBUG Processing 296/518 atomic regions from SNP 88730 to 89330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,090 DEBUG Processing 342/347 atomic regions from SNP 102468 to 103068 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:19,181 DEBUG Processing 297/518 atomic regions from SNP 89030 to 89630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,257 DEBUG Processing 343/347 atomic regions from SNP 102768 to 103368 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:19,360 DEBUG Processing 298/518 atomic regions from SNP 89330 to 89930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,412 DEBUG Processing 344/347 atomic regions from SNP 103068 to 103668 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:19,550 DEBUG Processing 299/518 atomic regions from SNP 89630 to 90230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,578 DEBUG Processing 345/347 atomic regions from SNP 103368 to 103968 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:19,730 DEBUG Processing 300/518 atomic regions from SNP 89930 to 90530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,759 DEBUG Processing 346/347 atomic regions from SNP 103668 to 104268 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:19,912 DEBUG Processing 301/518 atomic regions from SNP 90230 to 90830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,926 DEBUG Processing 347/347 atomic regions from SNP 103968 to 104568 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:20,046 DEBUG Unique SNPs positions in subchromosome 1: 104569 2025-01-31 10:01:20,101 DEBUG Processing 302/518 atomic regions from SNP 90530 to 91130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,308 DEBUG Processing 303/518 atomic regions from SNP 90830 to 91430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,511 DEBUG Processing 304/518 atomic regions from SNP 91130 to 91730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,701 DEBUG Processing 305/518 atomic regions from SNP 91430 to 92030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,901 DEBUG Processing 306/518 atomic regions from SNP 91730 to 92330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,105 DEBUG Processing 307/518 atomic regions from SNP 92030 to 92630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,325 DEBUG Processing 308/518 atomic regions from SNP 92330 to 92930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,529 DEBUG Processing 309/518 atomic regions from SNP 92630 to 93230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,751 DEBUG Processing 310/518 atomic regions from SNP 92930 to 93530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,947 DEBUG Processing 311/518 atomic regions from SNP 93230 to 93830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,173 DEBUG Processing 312/518 atomic regions from SNP 93530 to 94130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,330 DEBUG Subchromosome time: 77.85957648197655, subchromosome SNPs: 104569 2025-01-31 10:01:22,330 DEBUG Estimated BADs: [4.69, 6.25, 0.78, 3.13, 0.78, 1.56, 0.78, 1.56, 0.78, 1.56, 0.78, 3.13, 0.39, 1.56, 0.31, 1.56, 3.13, 0.52, 4.69, 1.56, 0.39, 1.56] SNP counts: [4162, 4064, 880, 4457, 7902, 3674, 9264, 4023, 7587, 2548, 3247, 1561, 4490, 6045, 1138, 3325, 2397, 870, 6667, 3265, 6286, 16717] SNP IDs counts: [4162, 4064, 880, 4457, 7902, 3674, 9264, 4023, 7587, 2548, 3247, 1561, 4490, 6045, 1138, 3325, 2397, 870, 6667, 3265, 6286, 16717] Critical gap: 413253bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 5.36Mbp, 7.62Mbp, 8.24Mbp, 10.99Mbp, 15.56Mbp, 17.54Mbp, 22.75Mbp, 24.90Mbp, 29.02Mbp, 30.37Mbp, 32.18Mbp, 33.02Mbp, 35.74Mbp, 38.98Mbp, 39.82Mbp, 41.68Mbp, 42.94Mbp, 43.44Mbp, 46.95Mbp, 48.70Mbp, 52.33Mbp, 61.43Mbp] 2025-01-31 10:01:22,330 DEBUG chr19 time: 77.86038220406044 s 2025-01-31 10:01:22,410 DEBUG chr19: Fitting background model for 22 segments 2025-01-31 10:01:22,445 DEBUG Processing 313/518 atomic regions from SNP 93830 to 94430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,673 DEBUG Processing 314/518 atomic regions from SNP 94130 to 94730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,906 DEBUG Processing 315/518 atomic regions from SNP 94430 to 95030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,125 DEBUG Processing 316/518 atomic regions from SNP 94730 to 95330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,360 DEBUG Processing 317/518 atomic regions from SNP 95030 to 95630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,670 DEBUG Processing 318/518 atomic regions from SNP 95330 to 95930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,034 DEBUG Processing 319/518 atomic regions from SNP 95630 to 96230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,276 DEBUG Processing 320/518 atomic regions from SNP 95930 to 96530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,552 DEBUG Processing 321/518 atomic regions from SNP 96230 to 96830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,907 DEBUG Processing 322/518 atomic regions from SNP 96530 to 97130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,135 DEBUG Processing 323/518 atomic regions from SNP 96830 to 97430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,547 DEBUG Processing 324/518 atomic regions from SNP 97130 to 97730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,750 DEBUG Processing 325/518 atomic regions from SNP 97430 to 98030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,104 DEBUG Processing 326/518 atomic regions from SNP 97730 to 98330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,298 DEBUG Processing 327/518 atomic regions from SNP 98030 to 98630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,498 DEBUG Processing 328/518 atomic regions from SNP 98330 to 98930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,811 DEBUG Processing 329/518 atomic regions from SNP 98630 to 99230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,155 DEBUG Processing 330/518 atomic regions from SNP 98930 to 99530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,594 DEBUG Processing 331/518 atomic regions from SNP 99230 to 99830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,142 DEBUG Processing 332/518 atomic regions from SNP 99530 to 100130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,661 DEBUG Processing 333/518 atomic regions from SNP 99830 to 100430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,922 DEBUG Processing 334/518 atomic regions from SNP 100130 to 100730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,264 DEBUG Processing 335/518 atomic regions from SNP 100430 to 101030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,800 DEBUG Processing 336/518 atomic regions from SNP 100730 to 101330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,409 DEBUG Processing 337/518 atomic regions from SNP 101030 to 101630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,668 DEBUG Processing 338/518 atomic regions from SNP 101330 to 101930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,220 DEBUG Processing 339/518 atomic regions from SNP 101630 to 102230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,494 DEBUG Processing 340/518 atomic regions from SNP 101930 to 102530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,961 DEBUG Processing 341/518 atomic regions from SNP 102230 to 102830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,283 DEBUG Processing 342/518 atomic regions from SNP 102530 to 103130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,648 DEBUG Processing 343/518 atomic regions from SNP 102830 to 103430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,957 DEBUG Processing 344/518 atomic regions from SNP 103130 to 103730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,193 DEBUG Processing 345/518 atomic regions from SNP 103430 to 104030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,716 DEBUG Processing 346/518 atomic regions from SNP 103730 to 104330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,278 DEBUG Processing 347/518 atomic regions from SNP 104030 to 104630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,731 DEBUG Processing 348/518 atomic regions from SNP 104330 to 104930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,506 DEBUG Processing 349/518 atomic regions from SNP 104630 to 105230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,203 DEBUG Processing 350/518 atomic regions from SNP 104930 to 105530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,732 DEBUG Processing 351/518 atomic regions from SNP 105230 to 105830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,530 DEBUG Processing 352/518 atomic regions from SNP 105530 to 106130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,153 DEBUG Processing 353/518 atomic regions from SNP 105830 to 106430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,441 DEBUG Processing 354/518 atomic regions from SNP 106130 to 106730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,771 DEBUG Processing 355/518 atomic regions from SNP 106430 to 107030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,091 DEBUG Processing 356/518 atomic regions from SNP 106730 to 107330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,413 DEBUG Processing 357/518 atomic regions from SNP 107030 to 107630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,617 DEBUG Processing 358/518 atomic regions from SNP 107330 to 107930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,812 DEBUG Processing 359/518 atomic regions from SNP 107630 to 108230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,000 DEBUG Processing 360/518 atomic regions from SNP 107930 to 108530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,177 DEBUG Processing 361/518 atomic regions from SNP 108230 to 108830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,360 DEBUG Processing 362/518 atomic regions from SNP 108530 to 109130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,543 DEBUG Processing 363/518 atomic regions from SNP 108830 to 109430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,743 DEBUG Processing 364/518 atomic regions from SNP 109130 to 109730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,942 DEBUG Processing 365/518 atomic regions from SNP 109430 to 110030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,132 DEBUG Processing 366/518 atomic regions from SNP 109730 to 110330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,318 DEBUG Processing 367/518 atomic regions from SNP 110030 to 110630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,507 DEBUG Processing 368/518 atomic regions from SNP 110330 to 110930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,690 DEBUG Processing 369/518 atomic regions from SNP 110630 to 111230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,870 DEBUG Processing 370/518 atomic regions from SNP 110930 to 111530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,055 DEBUG Processing 371/518 atomic regions from SNP 111230 to 111830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,236 DEBUG Processing 372/518 atomic regions from SNP 111530 to 112130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,420 DEBUG Processing 373/518 atomic regions from SNP 111830 to 112430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,599 DEBUG Processing 374/518 atomic regions from SNP 112130 to 112730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,778 DEBUG Processing 375/518 atomic regions from SNP 112430 to 113030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,966 DEBUG Processing 376/518 atomic regions from SNP 112730 to 113330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,154 DEBUG Processing 377/518 atomic regions from SNP 113030 to 113630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,334 DEBUG Processing 378/518 atomic regions from SNP 113330 to 113930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,509 DEBUG Processing 379/518 atomic regions from SNP 113630 to 114230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,686 DEBUG Processing 380/518 atomic regions from SNP 113930 to 114530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,882 DEBUG Processing 381/518 atomic regions from SNP 114230 to 114830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,094 DEBUG Processing 382/518 atomic regions from SNP 114530 to 115130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,307 DEBUG Processing 383/518 atomic regions from SNP 114830 to 115430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,520 DEBUG Processing 384/518 atomic regions from SNP 115130 to 115730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,741 DEBUG Processing 385/518 atomic regions from SNP 115430 to 116030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,918 DEBUG Processing 386/518 atomic regions from SNP 115730 to 116330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,100 DEBUG Processing 387/518 atomic regions from SNP 116030 to 116630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,279 DEBUG Processing 388/518 atomic regions from SNP 116330 to 116930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,458 DEBUG Processing 389/518 atomic regions from SNP 116630 to 117230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,637 DEBUG Processing 390/518 atomic regions from SNP 116930 to 117530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,823 DEBUG Processing 391/518 atomic regions from SNP 117230 to 117830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,006 DEBUG Processing 392/518 atomic regions from SNP 117530 to 118130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,185 DEBUG Processing 393/518 atomic regions from SNP 117830 to 118430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,369 DEBUG Processing 394/518 atomic regions from SNP 118130 to 118730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,564 DEBUG Processing 395/518 atomic regions from SNP 118430 to 119030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,749 DEBUG Processing 396/518 atomic regions from SNP 118730 to 119330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,930 DEBUG Processing 397/518 atomic regions from SNP 119030 to 119630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,118 DEBUG Processing 398/518 atomic regions from SNP 119330 to 119930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,424 DEBUG Processing 399/518 atomic regions from SNP 119630 to 120230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,606 DEBUG Processing 400/518 atomic regions from SNP 119930 to 120530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,802 DEBUG Processing 401/518 atomic regions from SNP 120230 to 120830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,116 DEBUG Processing 402/518 atomic regions from SNP 120530 to 121130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,376 DEBUG Processing 403/518 atomic regions from SNP 120830 to 121430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,670 DEBUG Processing 404/518 atomic regions from SNP 121130 to 121730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,878 DEBUG Processing 405/518 atomic regions from SNP 121430 to 122030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,389 DEBUG Processing 406/518 atomic regions from SNP 121730 to 122330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,832 DEBUG Processing 407/518 atomic regions from SNP 122030 to 122630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,285 DEBUG Processing 408/518 atomic regions from SNP 122330 to 122930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,058 DEBUG Processing 409/518 atomic regions from SNP 122630 to 123230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,419 DEBUG Processing 410/518 atomic regions from SNP 122930 to 123530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,025 DEBUG Processing 411/518 atomic regions from SNP 123230 to 123830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,306 DEBUG Processing 412/518 atomic regions from SNP 123530 to 124130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,497 DEBUG Processing 413/518 atomic regions from SNP 123830 to 124430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,789 DEBUG Processing 414/518 atomic regions from SNP 124130 to 124730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,064 DEBUG Processing 415/518 atomic regions from SNP 124430 to 125030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,576 DEBUG Processing 416/518 atomic regions from SNP 124730 to 125330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,665 DEBUG Processing 417/518 atomic regions from SNP 125030 to 125630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,626 DEBUG Processing 418/518 atomic regions from SNP 125330 to 125930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,652 DEBUG Processing 419/518 atomic regions from SNP 125630 to 126230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,220 DEBUG Processing 420/518 atomic regions from SNP 125930 to 126530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,333 DEBUG Processing 421/518 atomic regions from SNP 126230 to 126830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,248 DEBUG Processing 422/518 atomic regions from SNP 126530 to 127130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,298 DEBUG Processing 423/518 atomic regions from SNP 126830 to 127430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,913 DEBUG Processing 424/518 atomic regions from SNP 127130 to 127730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,283 DEBUG Processing 425/518 atomic regions from SNP 127430 to 128030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,627 DEBUG Processing 426/518 atomic regions from SNP 127730 to 128330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,863 DEBUG Processing 427/518 atomic regions from SNP 128030 to 128630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,221 DEBUG Processing 428/518 atomic regions from SNP 128330 to 128930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,583 DEBUG Processing 429/518 atomic regions from SNP 128630 to 129230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,839 DEBUG Processing 430/518 atomic regions from SNP 128930 to 129530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,168 DEBUG Processing 431/518 atomic regions from SNP 129230 to 129830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,462 DEBUG Processing 432/518 atomic regions from SNP 129530 to 130130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,701 DEBUG Processing 433/518 atomic regions from SNP 129830 to 130430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,015 DEBUG Processing 434/518 atomic regions from SNP 130130 to 130730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,319 DEBUG Processing 435/518 atomic regions from SNP 130430 to 131030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,679 DEBUG Processing 436/518 atomic regions from SNP 130730 to 131330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,056 DEBUG Processing 437/518 atomic regions from SNP 131030 to 131630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,313 DEBUG Processing 438/518 atomic regions from SNP 131330 to 131930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,498 DEBUG Processing 439/518 atomic regions from SNP 131630 to 132230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,783 DEBUG Processing 440/518 atomic regions from SNP 131930 to 132530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,119 DEBUG Processing 441/518 atomic regions from SNP 132230 to 132830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,409 DEBUG Processing 442/518 atomic regions from SNP 132530 to 133130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,824 DEBUG Processing 443/518 atomic regions from SNP 132830 to 133430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,317 DEBUG Processing 444/518 atomic regions from SNP 133130 to 133730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,538 DEBUG Processing 445/518 atomic regions from SNP 133430 to 134030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,879 DEBUG Processing 446/518 atomic regions from SNP 133730 to 134330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,259 DEBUG Processing 447/518 atomic regions from SNP 134030 to 134630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,571 DEBUG Processing 448/518 atomic regions from SNP 134330 to 134930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,944 DEBUG Processing 449/518 atomic regions from SNP 134630 to 135230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,132 DEBUG Processing 450/518 atomic regions from SNP 134930 to 135530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,328 DEBUG Processing 451/518 atomic regions from SNP 135230 to 135830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,504 DEBUG Processing 452/518 atomic regions from SNP 135530 to 136130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,803 DEBUG Processing 453/518 atomic regions from SNP 135830 to 136430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,201 DEBUG Processing 454/518 atomic regions from SNP 136130 to 136730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,630 DEBUG Processing 455/518 atomic regions from SNP 136430 to 137030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,930 DEBUG Processing 456/518 atomic regions from SNP 136730 to 137330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,266 DEBUG Processing 457/518 atomic regions from SNP 137030 to 137630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,627 DEBUG Processing 458/518 atomic regions from SNP 137330 to 137930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,967 DEBUG Processing 459/518 atomic regions from SNP 137630 to 138230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,288 DEBUG Processing 460/518 atomic regions from SNP 137930 to 138530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,513 DEBUG Processing 461/518 atomic regions from SNP 138230 to 138830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,709 DEBUG Processing 462/518 atomic regions from SNP 138530 to 139130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,900 DEBUG Processing 463/518 atomic regions from SNP 138830 to 139430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,121 DEBUG Processing 464/518 atomic regions from SNP 139130 to 139730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,370 DEBUG Processing 465/518 atomic regions from SNP 139430 to 140030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,614 DEBUG Processing 466/518 atomic regions from SNP 139730 to 140330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,840 DEBUG Processing 467/518 atomic regions from SNP 140030 to 140630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,059 DEBUG Processing 468/518 atomic regions from SNP 140330 to 140930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,245 DEBUG Processing 469/518 atomic regions from SNP 140630 to 141230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,422 DEBUG Processing 470/518 atomic regions from SNP 140930 to 141530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,606 DEBUG Processing 471/518 atomic regions from SNP 141230 to 141830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,789 DEBUG Processing 472/518 atomic regions from SNP 141530 to 142130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,967 DEBUG Processing 473/518 atomic regions from SNP 141830 to 142430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,160 DEBUG Processing 474/518 atomic regions from SNP 142130 to 142730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,362 DEBUG Processing 475/518 atomic regions from SNP 142430 to 143030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,551 DEBUG Processing 476/518 atomic regions from SNP 142730 to 143330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,733 DEBUG Processing 477/518 atomic regions from SNP 143030 to 143630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,973 DEBUG Processing 478/518 atomic regions from SNP 143330 to 143930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,246 DEBUG Processing 479/518 atomic regions from SNP 143630 to 144230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,500 DEBUG Processing 480/518 atomic regions from SNP 143930 to 144530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,755 DEBUG Processing 481/518 atomic regions from SNP 144230 to 144830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,990 DEBUG Processing 482/518 atomic regions from SNP 144530 to 145130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,242 DEBUG Processing 483/518 atomic regions from SNP 144830 to 145430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,500 DEBUG Processing 484/518 atomic regions from SNP 145130 to 145730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,699 DEBUG Processing 485/518 atomic regions from SNP 145430 to 146030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,935 DEBUG Processing 486/518 atomic regions from SNP 145730 to 146330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,187 DEBUG Processing 487/518 atomic regions from SNP 146030 to 146630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,446 DEBUG Processing 488/518 atomic regions from SNP 146330 to 146930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,713 DEBUG Processing 489/518 atomic regions from SNP 146630 to 147230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,899 DEBUG Processing 490/518 atomic regions from SNP 146930 to 147530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,074 DEBUG Processing 491/518 atomic regions from SNP 147230 to 147830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,303 DEBUG Processing 492/518 atomic regions from SNP 147530 to 148130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,513 DEBUG Processing 493/518 atomic regions from SNP 147830 to 148430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,726 DEBUG Processing 494/518 atomic regions from SNP 148130 to 148730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,952 DEBUG Processing 495/518 atomic regions from SNP 148430 to 149030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,179 DEBUG Processing 496/518 atomic regions from SNP 148730 to 149330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,419 DEBUG Processing 497/518 atomic regions from SNP 149030 to 149630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,649 DEBUG Processing 498/518 atomic regions from SNP 149330 to 149930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,880 DEBUG Processing 499/518 atomic regions from SNP 149630 to 150230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,123 DEBUG Processing 500/518 atomic regions from SNP 149930 to 150530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,302 DEBUG Processing 501/518 atomic regions from SNP 150230 to 150830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,476 DEBUG Processing 502/518 atomic regions from SNP 150530 to 151130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,666 DEBUG Processing 503/518 atomic regions from SNP 150830 to 151430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,914 DEBUG Processing 504/518 atomic regions from SNP 151130 to 151730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,160 DEBUG Processing 505/518 atomic regions from SNP 151430 to 152030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,379 DEBUG Processing 506/518 atomic regions from SNP 151730 to 152330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,568 DEBUG Processing 507/518 atomic regions from SNP 152030 to 152630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,875 DEBUG Processing 508/518 atomic regions from SNP 152330 to 152930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,097 DEBUG Processing 509/518 atomic regions from SNP 152630 to 153230 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,288 DEBUG Processing 510/518 atomic regions from SNP 152930 to 153530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,462 DEBUG Processing 511/518 atomic regions from SNP 153230 to 153830 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,637 DEBUG Processing 512/518 atomic regions from SNP 153530 to 154130 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,816 DEBUG Processing 513/518 atomic regions from SNP 153830 to 154430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,990 DEBUG Processing 514/518 atomic regions from SNP 154130 to 154730 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,173 DEBUG Processing 515/518 atomic regions from SNP 154430 to 155030 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,347 DEBUG Processing 516/518 atomic regions from SNP 154730 to 155330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,523 DEBUG Processing 517/518 atomic regions from SNP 155030 to 155630 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,696 DEBUG Processing 518/518 atomic regions from SNP 155330 to 155930 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,809 DEBUG Unique SNPs positions in subchromosome 1: 155931 2025-01-31 10:02:30,966 DEBUG Subchromosome time: 150.5386783259455, subchromosome SNPs: 155931 2025-01-31 10:02:30,966 DEBUG Estimated BADs: [1.11, 0.28, 1.11, 0.37, 1.11, 4.44, 1.11, 3.33, 1.11, 0.55, 3.33, 1.11, 4.44, 1.11, 4.44, 1.11, 0.37, 2.22, 1.11, 3.33, 1.11, 4.44, 0.55] SNP counts: [24233, 4445, 11753, 8714, 5209, 5273, 1667, 821, 21893, 10723, 396, 6638, 2731, 9766, 972, 6592, 3921, 8382, 3510, 692, 8123, 267, 9210] SNP IDs counts: [24233, 4445, 11753, 8714, 5209, 5273, 1667, 821, 21893, 10723, 396, 6638, 2731, 9766, 972, 6592, 3921, 8382, 3510, 692, 8123, 267, 9210] Critical gap: 509323bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.82Mbp, 19.54Mbp, 26.12Mbp, 31.12Mbp, 34.05Mbp, 36.81Mbp, 37.81Mbp, 38.24Mbp, 50.49Mbp, 56.55Mbp, 56.76Mbp, 60.48Mbp, 61.91Mbp, 67.20Mbp, 67.70Mbp, 71.34Mbp, 73.57Mbp, 78.13Mbp, 80.08Mbp, 80.44Mbp, 84.85Mbp, 84.98Mbp, 90.70Mbp] 2025-01-31 10:02:30,967 DEBUG chr18 time: 150.5391971609788 s 2025-01-31 10:02:31,098 DEBUG chr18: Fitting background model for 23 segments 2025-01-31 10:02:49,180 DEBUG Results of fit_background_model emitted. 2025-01-31 10:02:49,299 INFO Signal to noise fit: SPOT=0.29±0.15 2025-01-31 10:02:49,305 INFO Found 7 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 10:02:49,354 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:02:49,354 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:02:53,888 DEBUG chr11: Fitting background model for 2 segments 2025-01-31 10:02:54,021 DEBUG chr13: Fitting background model for 3 segments 2025-01-31 10:02:56,512 DEBUG chr1: Fitting background model for 2 segments 2025-01-31 10:02:59,682 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:02:59,755 INFO Signal to noise fit: SPOT=0.29±0.14 2025-01-31 10:02:59,760 INFO Found 4 outlier SPOT score segments at iteration 2. Refitting with approximated signal/noise constraint. 2025-01-31 10:02:59,801 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:02:59,801 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:03:04,200 DEBUG chr10: Fitting background model for 1 segments 2025-01-31 10:03:04,493 DEBUG chr11: Fitting background model for 1 segments 2025-01-31 10:03:05,306 DEBUG chr7: Fitting background model for 1 segments 2025-01-31 10:03:06,866 DEBUG chr1: Fitting background model for 1 segments 2025-01-31 10:03:15,001 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:03:15,072 INFO Signal to noise fit: SPOT=0.29±0.14 2025-01-31 10:03:15,077 INFO Final SPOT score: 0.29±0.14. Refitted 9 segments. 2025-01-31 10:03:15,125 INFO Estimating per-bp parameters of background model 2025-01-31 10:03:15,131 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:03:15,131 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:03:21,688 DEBUG chr5:3002500-5907001: Successfully fit background model for 2,547,570 bp. Use segment r for 0 bp 2025-01-31 10:03:21,859 DEBUG chr4:3050000-5104251: Successfully fit background model for 1,606,176 bp. Use segment r for 0 bp 2025-01-31 10:03:22,150 DEBUG chr3:3000000-8563251: Successfully fit background model for 4,799,713 bp. Use segment r for 0 bp 2025-01-31 10:03:22,200 DEBUG chr4:5104251-8522751: Successfully fit background model for 3,001,375 bp. Use segment r for 0 bp 2025-01-31 10:03:22,326 DEBUG chr3:8563251-10246251: Successfully fit background model for 1,545,956 bp. Use segment r for 0 bp 2025-01-31 10:03:22,853 DEBUG chr2:3051000-7387751: Successfully fit background model for 4,100,380 bp. Use segment r for 0 bp 2025-01-31 10:03:23,037 DEBUG chr2:7387751-9175251: Successfully fit background model for 1,570,882 bp. Use segment r for 0 bp 2025-01-31 10:03:23,053 DEBUG chr4:8522751-16331751: Successfully fit background model for 7,045,085 bp. Use segment r for 0 bp 2025-01-31 10:03:23,386 DEBUG chrX:3055000-7541251: Successfully fit background model for 1,993,547 bp. Use segment r for 1,637 bp 2025-01-31 10:03:23,416 DEBUG chr3:10246251-19125751: Successfully fit background model for 7,469,523 bp. Use segment r for 0 bp 2025-01-31 10:03:23,417 DEBUG chr2:9175251-12519251: Successfully fit background model for 3,107,134 bp. Use segment r for 0 bp 2025-01-31 10:03:23,440 DEBUG chrX:7541251-7935251: Successfully fit background model for 385,051 bp. Use segment r for 0 bp 2025-01-31 10:03:23,509 DEBUG chr3:19125751-19892251: Successfully fit background model for 710,996 bp. Use segment r for 0 bp 2025-01-31 10:03:23,982 DEBUG chr2:12519251-18018751: Successfully fit background model for 4,917,733 bp. Use segment r for 0 bp 2025-01-31 10:03:24,111 DEBUG chrX:7935251-13757751: Successfully fit background model for 5,119,362 bp. Use segment r for 0 bp 2025-01-31 10:03:24,168 DEBUG chr2:18018751-19803751: Successfully fit background model for 1,661,010 bp. Use segment r for 0 bp 2025-01-31 10:03:24,388 DEBUG chrX:13757751-16483501: Successfully fit background model for 2,333,726 bp. Use segment r for 0 bp 2025-01-31 10:03:24,570 DEBUG chr5:5907001-20873751: Successfully fit background model for 11,927,865 bp. Use segment r for 4,314 bp 2025-01-31 10:03:24,734 DEBUG chr2:19803751-24914751: Successfully fit background model for 4,485,024 bp. Use segment r for 0 bp 2025-01-31 10:03:24,933 DEBUG chr5:20873751-24315251: Successfully fit background model for 3,169,887 bp. Use segment r for 0 bp 2025-01-31 10:03:24,946 DEBUG chrX:16483501-21525501: Successfully fit background model for 4,359,721 bp. Use segment r for 0 bp 2025-01-31 10:03:25,005 DEBUG chr5:24315251-24899251: Successfully fit background model for 563,798 bp. Use segment r for 0 bp 2025-01-31 10:03:25,514 DEBUG chr3:19892251-30592251: Successfully fit background model for 9,539,484 bp. Use segment r for 182 bp 2025-01-31 10:03:25,564 DEBUG chr2:24914751-32766251: Successfully fit background model for 7,612,171 bp. Use segment r for 0 bp 2025-01-31 10:03:25,649 DEBUG chr5:24899251-30286251: Successfully fit background model for 4,857,415 bp. Use segment r for 0 bp 2025-01-31 10:03:25,758 DEBUG chr5:30286251-31242751: Successfully fit background model for 879,119 bp. Use segment r for 0 bp 2025-01-31 10:03:25,858 DEBUG chrX:21525501-26917001: Successfully fit background model for 2,786,251 bp. Use segment r for 2,957 bp 2025-01-31 10:03:25,916 DEBUG chr2:32766251-36253251: Successfully fit background model for 3,405,489 bp. Use segment r for 0 bp 2025-01-31 10:03:26,009 DEBUG chr1:3000500-16604751: Successfully fit background model for 12,086,217 bp. Use segment r for 3,388 bp 2025-01-31 10:03:26,015 DEBUG chr2:36253251-36976251: Successfully fit background model for 595,283 bp. Use segment r for 0 bp 2025-01-31 10:03:26,110 DEBUG chr3:30592251-35914251: Successfully fit background model for 4,871,639 bp. Use segment r for 0 bp 2025-01-31 10:03:26,159 DEBUG chr4:16331751-32735251: Successfully fit background model for 14,552,061 bp. Use segment r for 11,496 bp 2025-01-31 10:03:26,255 DEBUG chr4:32735251-33306001: Successfully fit background model for 548,950 bp. Use segment r for 0 bp 2025-01-31 10:03:26,293 DEBUG chr2:36976251-39376251: Successfully fit background model for 2,243,776 bp. Use segment r for 0 bp 2025-01-31 10:03:26,463 DEBUG chr4:33306001-34979251: Successfully fit background model for 1,559,221 bp. Use segment r for 0 bp 2025-01-31 10:03:26,684 DEBUG chr5:31242751-39199751: Successfully fit background model for 7,563,248 bp. Use segment r for 0 bp 2025-01-31 10:03:26,747 DEBUG chr2:39376251-43931751: Successfully fit background model for 4,140,032 bp. Use segment r for 0 bp 2025-01-31 10:03:26,945 DEBUG chr2:43931751-45835251: Successfully fit background model for 1,824,475 bp. Use segment r for 0 bp 2025-01-31 10:03:26,995 DEBUG chr4:34979251-40134251: Successfully fit background model for 4,572,292 bp. Use segment r for 0 bp 2025-01-31 10:03:27,046 DEBUG chr3:35914251-42199751: Successfully fit background model for 5,721,015 bp. Use segment r for 4,722 bp 2025-01-31 10:03:27,054 DEBUG chr5:39199751-42731251: Successfully fit background model for 3,161,192 bp. Use segment r for 0 bp 2025-01-31 10:03:27,177 DEBUG chr2:45835251-48005251: Successfully fit background model for 1,943,737 bp. Use segment r for 0 bp 2025-01-31 10:03:27,178 DEBUG chrX:31132500-38871251: Successfully fit background model for 2,795,261 bp. Use segment r for 2,857 bp 2025-01-31 10:03:27,188 DEBUG chr4:40134251-41855501: Successfully fit background model for 1,562,054 bp. Use segment r for 0 bp 2025-01-31 10:03:27,236 DEBUG chr4:42724000-43059751: Successfully fit background model for 261,675 bp. Use segment r for 0 bp 2025-01-31 10:03:27,543 DEBUG chr5:42731251-46016251: Successfully fit background model for 2,968,224 bp. Use segment r for 7,863 bp 2025-01-31 10:03:27,730 DEBUG chr4:43059751-47525751: Successfully fit background model for 4,300,111 bp. Use segment r for 0 bp 2025-01-31 10:03:27,732 DEBUG chr2:48005251-53265751: Successfully fit background model for 4,979,829 bp. Use segment r for 0 bp 2025-01-31 10:03:27,959 DEBUG chr4:47525751-49699751: Successfully fit background model for 2,005,624 bp. Use segment r for 0 bp 2025-01-31 10:03:28,064 DEBUG chr2:53265751-56464501: Successfully fit background model for 2,736,566 bp. Use segment r for 0 bp 2025-01-31 10:03:28,088 DEBUG chr5:46016251-51209251: Successfully fit background model for 4,754,141 bp. Use segment r for 0 bp 2025-01-31 10:03:28,122 DEBUG chr3:42199751-48912001: Successfully fit background model for 5,909,641 bp. Use segment r for 64,687 bp 2025-01-31 10:03:28,210 DEBUG chr4:49699751-52290251: Successfully fit background model for 2,267,126 bp. Use segment r for 0 bp 2025-01-31 10:03:28,286 DEBUG chrX:38871251-48053251: Successfully fit background model for 7,926,686 bp. Use segment r for 0 bp 2025-01-31 10:03:28,335 DEBUG chrX:48053251-48367251: Successfully fit background model for 306,590 bp. Use segment r for 0 bp 2025-01-31 10:03:28,352 DEBUG chr3:48912001-51154751: Successfully fit background model for 1,971,307 bp. Use segment r for 0 bp 2025-01-31 10:03:28,386 DEBUG chr5:51209251-54280251: Successfully fit background model for 2,957,456 bp. Use segment r for 0 bp 2025-01-31 10:03:28,406 DEBUG chr3:51154751-51629251: Successfully fit background model for 453,809 bp. Use segment r for 0 bp 2025-01-31 10:03:28,555 DEBUG chrX:48367251-50547251: Successfully fit background model for 1,838,439 bp. Use segment r for 0 bp 2025-01-31 10:03:28,571 DEBUG chrX:50547251-50636251: Successfully fit background model for 81,397 bp. Use segment r for 0 bp 2025-01-31 10:03:28,605 DEBUG chr4:52290251-56165251: Successfully fit background model for 3,609,074 bp. Use segment r for 0 bp 2025-01-31 10:03:29,151 DEBUG chr1:16604751-33487001: Successfully fit background model for 15,030,248 bp. Use segment r for 4,386 bp 2025-01-31 10:03:29,264 DEBUG chr2:56464501-66258251: Successfully fit background model for 9,077,852 bp. Use segment r for 0 bp 2025-01-31 10:03:29,445 DEBUG chr2:66258251-67963751: Successfully fit background model for 1,562,769 bp. Use segment r for 0 bp 2025-01-31 10:03:29,763 DEBUG chr1:33487001-39559751: Successfully fit background model for 5,798,176 bp. Use segment r for 0 bp 2025-01-31 10:03:29,879 DEBUG chr4:56165251-63983251: Successfully fit background model for 5,762,714 bp. Use segment r for 3,743 bp 2025-01-31 10:03:30,067 DEBUG chr5:54280251-63395501: Successfully fit background model for 8,061,240 bp. Use segment r for 5,037 bp 2025-01-31 10:03:30,201 DEBUG chr1:39559751-44098251: Successfully fit background model for 4,338,706 bp. Use segment r for 0 bp 2025-01-31 10:03:30,227 DEBUG chr1:44098251-44175251: Successfully fit background model for 75,297 bp. Use segment r for 0 bp 2025-01-31 10:03:30,597 DEBUG chr5:63395501-68509751: Successfully fit background model for 4,821,542 bp. Use segment r for 0 bp 2025-01-31 10:03:30,777 DEBUG chr3:51629251-71054751: Successfully fit background model for 17,600,285 bp. Use segment r for 0 bp 2025-01-31 10:03:30,916 DEBUG chr5:68509751-71614751: Successfully fit background model for 2,734,157 bp. Use segment r for 0 bp 2025-01-31 10:03:30,997 DEBUG chr2:67963751-80937251: Successfully fit background model for 12,376,778 bp. Use segment r for 0 bp 2025-01-31 10:03:31,087 DEBUG chr1:44175251-52097751: Successfully fit background model for 6,889,820 bp. Use segment r for 0 bp 2025-01-31 10:03:31,162 DEBUG chr1:52097751-52668751: Successfully fit background model for 531,351 bp. Use segment r for 0 bp 2025-01-31 10:03:31,231 DEBUG chr2:80937251-83114251: Successfully fit background model for 1,903,239 bp. Use segment r for 0 bp 2025-01-31 10:03:31,248 DEBUG chrX:50636251-72906251: Successfully fit background model for 18,187,332 bp. Use segment r for 0 bp 2025-01-31 10:03:31,389 DEBUG chr2:83114251-84648251: Successfully fit background model for 1,248,334 bp. Use segment r for 0 bp 2025-01-31 10:03:31,466 DEBUG chr2:84648251-85302251: Successfully fit background model for 616,965 bp. Use segment r for 0 bp 2025-01-31 10:03:31,553 DEBUG chrX:72906251-75672251: Successfully fit background model for 2,153,173 bp. Use segment r for 0 bp 2025-01-31 10:03:31,585 DEBUG chr5:71614751-77855751: Successfully fit background model for 5,905,136 bp. Use segment r for 0 bp 2025-01-31 10:03:31,726 DEBUG chr3:71054751-79428251: Successfully fit background model for 7,451,652 bp. Use segment r for 0 bp 2025-01-31 10:03:31,740 DEBUG chr1:52668751-58390251: Successfully fit background model for 5,270,514 bp. Use segment r for 0 bp 2025-01-31 10:03:31,842 DEBUG chr3:79428251-80463751: Successfully fit background model for 944,476 bp. Use segment r for 0 bp 2025-01-31 10:03:31,895 DEBUG chr1:58390251-59893001: Successfully fit background model for 1,414,642 bp. Use segment r for 0 bp 2025-01-31 10:03:31,924 DEBUG chr2:85302251-89752751: Successfully fit background model for 3,881,916 bp. Use segment r for 0 bp 2025-01-31 10:03:32,185 DEBUG chr1:59893001-62695751: Successfully fit background model for 2,620,765 bp. Use segment r for 0 bp 2025-01-31 10:03:32,215 DEBUG chr3:80463751-84135251: Successfully fit background model for 3,400,344 bp. Use segment r for 0 bp 2025-01-31 10:03:32,417 DEBUG chr2:89752751-94612751: Successfully fit background model for 4,479,686 bp. Use segment r for 0 bp 2025-01-31 10:03:32,437 DEBUG chr1:62695751-65214751: Successfully fit background model for 2,369,398 bp. Use segment r for 0 bp 2025-01-31 10:03:32,566 DEBUG chr3:84135251-87745751: Successfully fit background model for 3,437,093 bp. Use segment r for 0 bp 2025-01-31 10:03:32,836 DEBUG chr3:87745751-90473751: Successfully fit background model for 2,591,514 bp. Use segment r for 0 bp 2025-01-31 10:03:33,015 DEBUG chr4:63983251-81797751: Successfully fit background model for 15,785,647 bp. Use segment r for 609 bp 2025-01-31 10:03:33,093 DEBUG chr2:94612751-101027751: Successfully fit background model for 5,341,373 bp. Use segment r for 0 bp 2025-01-31 10:03:33,168 DEBUG chr1:65214751-72210751: Successfully fit background model for 6,449,808 bp. Use segment r for 0 bp 2025-01-31 10:03:33,378 DEBUG chrX:75672251-91275751: Successfully fit background model for 13,406,394 bp. Use segment r for 0 bp 2025-01-31 10:03:33,378 DEBUG chr1:72210751-74274251: Successfully fit background model for 1,958,364 bp. Use segment r for 0 bp 2025-01-31 10:03:33,407 DEBUG chr3:90473751-94337251: Successfully fit background model for 2,953,963 bp. Use segment r for 608 bp 2025-01-31 10:03:33,421 DEBUG chr5:77855751-88549501: Successfully fit background model for 9,507,663 bp. Use segment r for 4,276 bp 2025-01-31 10:03:33,502 DEBUG chr4:81797751-86664251: Successfully fit background model for 4,522,737 bp. Use segment r for 0 bp 2025-01-31 10:03:33,507 DEBUG chr1:74274251-75496251: Successfully fit background model for 1,125,463 bp. Use segment r for 0 bp 2025-01-31 10:03:33,588 DEBUG chr2:101027751-106084251: Successfully fit background model for 4,821,892 bp. Use segment r for 0 bp 2025-01-31 10:03:33,657 DEBUG chrX:91275751-93793251: Successfully fit background model for 1,956,498 bp. Use segment r for 0 bp 2025-01-31 10:03:33,669 DEBUG chr3:94337251-96833751: Successfully fit background model for 2,293,353 bp. Use segment r for 0 bp 2025-01-31 10:03:33,795 DEBUG chrX:93793251-95029751: Successfully fit background model for 979,183 bp. Use segment r for 0 bp 2025-01-31 10:03:33,870 DEBUG chr4:86664251-89809751: Successfully fit background model for 2,788,208 bp. Use segment r for 0 bp 2025-01-31 10:03:34,014 DEBUG chr3:96833751-100358251: Successfully fit background model for 3,102,629 bp. Use segment r for 0 bp 2025-01-31 10:03:34,165 DEBUG chrX:95029751-98935751: Successfully fit background model for 3,329,464 bp. Use segment r for 0 bp 2025-01-31 10:03:34,175 DEBUG chr4:89809751-92920251: Successfully fit background model for 2,742,847 bp. Use segment r for 0 bp 2025-01-31 10:03:34,488 DEBUG chr1:75496251-84850251: Successfully fit background model for 8,622,491 bp. Use segment r for 0 bp 2025-01-31 10:03:34,650 DEBUG chr1:84850251-86313251: Successfully fit background model for 926,376 bp. Use segment r for 0 bp 2025-01-31 10:03:34,687 DEBUG chr1:86313251-86538751: Successfully fit background model for 216,746 bp. Use segment r for 0 bp 2025-01-31 10:03:34,770 DEBUG chr3:100358251-107839251: Successfully fit background model for 7,069,266 bp. Use segment r for 0 bp 2025-01-31 10:03:34,875 DEBUG chr3:107839251-108774751: Successfully fit background model for 908,082 bp. Use segment r for 0 bp 2025-01-31 10:03:34,917 DEBUG chrX:98935751-105953251: Successfully fit background model for 6,311,376 bp. Use segment r for 0 bp 2025-01-31 10:03:34,949 DEBUG chr2:106084251-118633251: Successfully fit background model for 11,500,050 bp. Use segment r for 0 bp 2025-01-31 10:03:35,046 DEBUG chr4:92920251-100986251: Successfully fit background model for 7,413,196 bp. Use segment r for 0 bp 2025-01-31 10:03:35,075 DEBUG chr3:108774751-110781751: Successfully fit background model for 1,852,639 bp. Use segment r for 0 bp 2025-01-31 10:03:35,323 DEBUG chr2:118633251-122386251: Successfully fit background model for 3,612,175 bp. Use segment r for 0 bp 2025-01-31 10:03:35,415 DEBUG chrX:105953251-110856751: Successfully fit background model for 4,210,427 bp. Use segment r for 0 bp 2025-01-31 10:03:35,478 DEBUG chr1:86538751-94318751: Successfully fit background model for 7,309,912 bp. Use segment r for 0 bp 2025-01-31 10:03:35,500 DEBUG chr2:122386251-123981751: Successfully fit background model for 1,418,518 bp. Use segment r for 0 bp 2025-01-31 10:03:35,574 DEBUG chr4:100986251-106561001: Successfully fit background model for 5,243,161 bp. Use segment r for 0 bp 2025-01-31 10:03:35,591 DEBUG chr3:110781751-115673251: Successfully fit background model for 4,080,886 bp. Use segment r for 0 bp 2025-01-31 10:03:35,697 DEBUG chr3:115673251-116618751: Successfully fit background model for 907,570 bp. Use segment r for 0 bp 2025-01-31 10:03:35,813 DEBUG chr2:123981751-127204751: Successfully fit background model for 3,037,370 bp. Use segment r for 0 bp 2025-01-31 10:03:35,942 DEBUG chr4:106561001-110294751: Successfully fit background model for 3,552,513 bp. Use segment r for 0 bp 2025-01-31 10:03:36,111 DEBUG chr4:110294751-111913751: Successfully fit background model for 1,430,473 bp. Use segment r for 0 bp 2025-01-31 10:03:36,158 DEBUG chr5:88549501-103653251: Successfully fit background model for 12,037,592 bp. Use segment r for 5,697 bp 2025-01-31 10:03:36,190 DEBUG chr3:116618751-121159751: Successfully fit background model for 4,197,292 bp. Use segment r for 0 bp 2025-01-31 10:03:36,214 DEBUG chr5:103653251-103833751: Successfully fit background model for 178,695 bp. Use segment r for 0 bp 2025-01-31 10:03:36,311 DEBUG chr2:127204751-132245751: Successfully fit background model for 4,840,903 bp. Use segment r for 0 bp 2025-01-31 10:03:36,393 DEBUG chr3:121159751-123233751: Successfully fit background model for 2,017,117 bp. Use segment r for 0 bp 2025-01-31 10:03:36,435 DEBUG chr4:111913751-113941251: Successfully fit background model for 1,738,532 bp. Use segment r for 28,477 bp 2025-01-31 10:03:36,515 DEBUG chr1:94318751-104536251: Successfully fit background model for 8,970,780 bp. Use segment r for 0 bp 2025-01-31 10:03:36,550 DEBUG chr4:113941251-115037251: Successfully fit background model for 1,007,688 bp. Use segment r for 0 bp 2025-01-31 10:03:36,562 DEBUG chr4:115037251-115104751: Successfully fit background model for 66,826 bp. Use segment r for 0 bp 2025-01-31 10:03:36,690 DEBUG chr4:115104751-115779751: Successfully fit background model for 504,487 bp. Use segment r for 2,951 bp 2025-01-31 10:03:36,692 DEBUG chr2:132245751-136177751: Successfully fit background model for 3,697,123 bp. Use segment r for 0 bp 2025-01-31 10:03:36,763 DEBUG chr5:103833751-108896751: Successfully fit background model for 4,623,391 bp. Use segment r for 0 bp 2025-01-31 10:03:36,767 DEBUG chr3:123233751-127183251: Successfully fit background model for 3,632,016 bp. Use segment r for 0 bp 2025-01-31 10:03:36,839 DEBUG chr1:104536251-107749751: Successfully fit background model for 2,954,446 bp. Use segment r for 0 bp 2025-01-31 10:03:36,909 DEBUG chr5:108896751-110092001: Successfully fit background model for 960,278 bp. Use segment r for 0 bp 2025-01-31 10:03:37,013 DEBUG chr5:110092001-111054751: Successfully fit background model for 937,459 bp. Use segment r for 0 bp 2025-01-31 10:03:37,153 DEBUG chr3:127183251-130731501: Successfully fit background model for 3,360,444 bp. Use segment r for 0 bp 2025-01-31 10:03:37,303 DEBUG chr5:111054751-113733751: Successfully fit background model for 2,608,075 bp. Use segment r for 0 bp 2025-01-31 10:03:37,489 DEBUG chr5:113733751-115504251: Successfully fit background model for 1,722,099 bp. Use segment r for 0 bp 2025-01-31 10:03:37,615 DEBUG chr3:130731501-135274751: Successfully fit background model for 4,075,569 bp. Use segment r for 0 bp 2025-01-31 10:03:37,685 DEBUG chr3:135274751-135865751: Successfully fit background model for 566,503 bp. Use segment r for 0 bp 2025-01-31 10:03:37,776 DEBUG chr5:115504251-118361251: Successfully fit background model for 2,787,681 bp. Use segment r for 0 bp 2025-01-31 10:03:37,832 DEBUG chrX:110856751-124247501: Successfully fit background model for 10,515,588 bp. Use segment r for 3,921 bp 2025-01-31 10:03:37,960 DEBUG chr5:118361251-120084751: Successfully fit background model for 1,696,994 bp. Use segment r for 0 bp 2025-01-31 10:03:38,040 DEBUG chr3:135865751-139163251: Successfully fit background model for 3,098,356 bp. Use segment r for 0 bp 2025-01-31 10:03:38,127 DEBUG chr1:107749751-118309751: Successfully fit background model for 9,183,039 bp. Use segment r for 0 bp 2025-01-31 10:03:38,330 DEBUG chr1:118309751-120187251: Successfully fit background model for 1,825,016 bp. Use segment r for 0 bp 2025-01-31 10:03:38,425 DEBUG chr3:139163251-141883251: Successfully fit background model for 2,454,813 bp. Use segment r for 14,928 bp 2025-01-31 10:03:38,471 DEBUG chr2:136177751-150743751: Successfully fit background model for 13,465,091 bp. Use segment r for 0 bp 2025-01-31 10:03:38,518 DEBUG chr5:120084751-125476751: Successfully fit background model for 5,166,024 bp. Use segment r for 0 bp 2025-01-31 10:03:38,578 DEBUG chr1:120187251-122684751: Successfully fit background model for 2,324,105 bp. Use segment r for 0 bp 2025-01-31 10:03:38,636 DEBUG chr4:115779751-131660751: Successfully fit background model for 14,387,803 bp. Use segment r for 0 bp 2025-01-31 10:03:38,696 DEBUG chr1:122684751-123713001: Successfully fit background model for 954,059 bp. Use segment r for 0 bp 2025-01-31 10:03:38,942 DEBUG chr3:141883251-147035251: Successfully fit background model for 4,894,488 bp. Use segment r for 0 bp 2025-01-31 10:03:38,944 DEBUG chr5:125476751-129713251: Successfully fit background model for 4,050,425 bp. Use segment r for 0 bp 2025-01-31 10:03:39,003 DEBUG chr5:129713251-130132251: Successfully fit background model for 358,730 bp. Use segment r for 0 bp 2025-01-31 10:03:39,106 DEBUG chrX:126004000-133900251: Successfully fit background model for 6,787,073 bp. Use segment r for 259 bp 2025-01-31 10:03:39,303 DEBUG chr2:150743751-158555001: Successfully fit background model for 7,237,811 bp. Use segment r for 0 bp 2025-01-31 10:03:39,396 DEBUG chr5:130132251-134134751: Successfully fit background model for 3,837,857 bp. Use segment r for 0 bp 2025-01-31 10:03:39,443 DEBUG chr1:123713001-130703251: Successfully fit background model for 6,489,534 bp. Use segment r for 0 bp 2025-01-31 10:03:39,596 DEBUG chr3:147035251-151603751: Successfully fit background model for 4,329,900 bp. Use segment r for 18 bp 2025-01-31 10:03:39,758 DEBUG chr2:158555001-163225251: Successfully fit background model for 4,462,341 bp. Use segment r for 0 bp 2025-01-31 10:03:39,760 DEBUG chr5:134134751-137788251: Successfully fit background model for 3,493,206 bp. Use segment r for 0 bp 2025-01-31 10:03:39,813 DEBUG chr4:131660751-141719751: Successfully fit background model for 9,823,617 bp. Use segment r for 0 bp 2025-01-31 10:03:39,927 DEBUG chr3:151603751-154911751: Successfully fit background model for 3,123,473 bp. Use segment r for 0 bp 2025-01-31 10:03:39,972 DEBUG chr1:130703251-136099251: Successfully fit background model for 5,245,781 bp. Use segment r for 0 bp 2025-01-31 10:03:40,151 DEBUG chr2:163225251-166990751: Successfully fit background model for 3,630,454 bp. Use segment r for 0 bp 2025-01-31 10:03:40,159 DEBUG chr3:154911751-157032251: Successfully fit background model for 1,952,168 bp. Use segment r for 0 bp 2025-01-31 10:03:40,275 DEBUG chr3:157032251-158046251: Successfully fit background model for 944,834 bp. Use segment r for 0 bp 2025-01-31 10:03:40,280 DEBUG chr2:166990751-168064751: Successfully fit background model for 1,035,440 bp. Use segment r for 0 bp 2025-01-31 10:03:40,325 DEBUG chr1:136099251-139544001: Successfully fit background model for 3,240,843 bp. Use segment r for 0 bp 2025-01-31 10:03:40,597 DEBUG chr3:158046251-160039680: Successfully fit background model for 1,605,461 bp. Use segment r for 8,248 bp 2025-01-31 10:03:40,680 DEBUG chr1:139544001-142859251: Successfully fit background model for 2,849,294 bp. Use segment r for 0 bp 2025-01-31 10:03:40,789 DEBUG chr4:141719751-147844251: Successfully fit background model for 3,894,721 bp. Use segment r for 367 bp 2025-01-31 10:03:40,847 DEBUG chr1:142859251-144410751: Successfully fit background model for 1,303,050 bp. Use segment r for 0 bp 2025-01-31 10:03:41,076 DEBUG chr4:147844251-150655251: Successfully fit background model for 2,751,680 bp. Use segment r for 0 bp 2025-01-31 10:03:41,269 DEBUG chr5:137788251-149609751: Successfully fit background model for 10,993,296 bp. Use segment r for 0 bp 2025-01-31 10:03:41,394 DEBUG chr1:144410751-149536251: Successfully fit background model for 4,493,397 bp. Use segment r for 0 bp 2025-01-31 10:03:41,401 DEBUG chr2:168064751-175179501: Successfully fit background model for 6,771,506 bp. Use segment r for 691 bp 2025-01-31 10:03:41,430 DEBUG chr4:150655251-153955251: Successfully fit background model for 3,237,856 bp. Use segment r for 0 bp 2025-01-31 10:03:41,529 DEBUG chr5:149609751-151834684: Successfully fit background model for 1,985,920 bp. Use segment r for 0 bp 2025-01-31 10:03:41,557 DEBUG chr1:149536251-151077251: Successfully fit background model for 1,430,819 bp. Use segment r for 0 bp 2025-01-31 10:03:41,695 DEBUG chr4:153955251-156508116: Successfully fit background model for 2,255,436 bp. Use segment r for 0 bp 2025-01-31 10:03:41,897 DEBUG chr2:176700000-179684751: Successfully fit background model for 1,796,078 bp. Use segment r for 801 bp 2025-01-31 10:03:42,162 DEBUG chr2:179684751-182113224: Successfully fit background model for 2,236,027 bp. Use segment r for 0 bp 2025-01-31 10:03:42,260 DEBUG chr1:151077251-156919751: Successfully fit background model for 5,530,444 bp. Use segment r for 0 bp 2025-01-31 10:03:42,592 DEBUG chr1:156919751-160041251: Successfully fit background model for 2,977,118 bp. Use segment r for 0 bp 2025-01-31 10:03:43,503 DEBUG chr1:160041251-167394751: Successfully fit background model for 6,839,206 bp. Use segment r for 0 bp 2025-01-31 10:03:43,845 DEBUG chr1:167394751-170834751: Successfully fit background model for 3,243,110 bp. Use segment r for 0 bp 2025-01-31 10:03:43,933 DEBUG chr1:170834751-171375751: Successfully fit background model for 501,885 bp. Use segment r for 0 bp 2025-01-31 10:03:44,020 DEBUG chr1:171375751-172205751: Successfully fit background model for 768,719 bp. Use segment r for 0 bp 2025-01-31 10:03:45,050 DEBUG chr1:172205751-178302251: Successfully fit background model for 5,506,693 bp. Use segment r for 0 bp 2025-01-31 10:03:45,384 DEBUG chr1:178302251-181228751: Successfully fit background model for 2,826,739 bp. Use segment r for 0 bp 2025-01-31 10:03:46,044 DEBUG chrX:133900251-162124751: Successfully fit background model for 22,750,110 bp. Use segment r for 76 bp 2025-01-31 10:03:46,156 DEBUG chr1:181228751-185403751: Successfully fit background model for 3,889,333 bp. Use segment r for 0 bp 2025-01-31 10:03:46,322 DEBUG chrX:162124751-164258251: Successfully fit background model for 1,965,592 bp. Use segment r for 0 bp 2025-01-31 10:03:46,877 DEBUG chr1:185403751-190817251: Successfully fit background model for 5,213,425 bp. Use segment r for 0 bp 2025-01-31 10:03:47,028 DEBUG chr1:190817251-192138001: Successfully fit background model for 1,225,954 bp. Use segment r for 0 bp 2025-01-31 10:03:47,108 DEBUG chrX:164258251-169971501: Successfully fit background model for 5,200,365 bp. Use segment r for 0 bp 2025-01-31 10:03:47,290 DEBUG chrX:169971501-171031299: Successfully fit background model for 5,730 bp. Use segment r for 0 bp 2025-01-31 10:03:47,599 DEBUG chr1:192138001-195471971: Successfully fit background model for 3,034,594 bp. Use segment r for 0 bp 2025-01-31 10:05:24,176 DEBUG chr6:3050000-9061751: Successfully fit background model for 5,340,973 bp. Use segment r for 0 bp 2025-01-31 10:05:26,055 DEBUG chr7:3004000-3573251: Successfully fit background model for 423,422 bp. Use segment r for 0 bp 2025-01-31 10:05:26,290 DEBUG chr7:3573251-5107751: Successfully fit background model for 1,232,062 bp. Use segment r for 76 bp 2025-01-31 10:05:26,305 DEBUG chr6:9061751-28386751: Successfully fit background model for 17,126,990 bp. Use segment r for 0 bp 2025-01-31 10:05:26,352 DEBUG chr7:5107751-5719501: Successfully fit background model for 444,639 bp. Use segment r for 0 bp 2025-01-31 10:05:26,501 DEBUG chr7:5719501-7302751: Successfully fit background model for 1,333,112 bp. Use segment r for 0 bp 2025-01-31 10:05:26,711 DEBUG chr10:3101500-14819251: Successfully fit background model for 10,665,026 bp. Use segment r for 0 bp 2025-01-31 10:05:26,848 DEBUG chr10:14819251-16135751: Successfully fit background model for 1,110,128 bp. Use segment r for 0 bp 2025-01-31 10:05:26,921 DEBUG chr6:28386751-35236751: Successfully fit background model for 6,550,647 bp. Use segment r for 0 bp 2025-01-31 10:05:27,194 DEBUG chr6:35236751-38114251: Successfully fit background model for 2,649,316 bp. Use segment r for 0 bp 2025-01-31 10:05:27,318 DEBUG chr6:38114251-39374251: Successfully fit background model for 1,230,914 bp. Use segment r for 0 bp 2025-01-31 10:05:27,344 DEBUG chr7:7302751-12880751: Successfully fit background model for 2,138,391 bp. Use segment r for 12,838 bp 2025-01-31 10:05:27,374 DEBUG chr7:12880751-13063751: Successfully fit background model for 175,231 bp. Use segment r for 0 bp 2025-01-31 10:05:27,670 DEBUG chr7:13063751-15907751: Successfully fit background model for 1,758,350 bp. Use segment r for 0 bp 2025-01-31 10:05:27,805 DEBUG chr7:15907751-17077751: Successfully fit background model for 1,135,451 bp. Use segment r for 0 bp 2025-01-31 10:05:27,805 DEBUG chr6:39374251-44036251: Successfully fit background model for 4,173,613 bp. Use segment r for 0 bp 2025-01-31 10:05:28,055 DEBUG chr7:17077751-18884251: Successfully fit background model for 1,264,387 bp. Use segment r for 8,890 bp 2025-01-31 10:05:28,150 DEBUG chr7:18884251-19817751: Successfully fit background model for 914,787 bp. Use segment r for 0 bp 2025-01-31 10:05:28,185 DEBUG chr7:19817751-20096001: Successfully fit background model for 225,180 bp. Use segment r for 0 bp 2025-01-31 10:05:28,219 DEBUG chr6:44036251-47175251: Successfully fit background model for 2,789,973 bp. Use segment r for 14,359 bp 2025-01-31 10:05:28,404 DEBUG chr6:47175251-49187251: Successfully fit background model for 1,756,343 bp. Use segment r for 0 bp 2025-01-31 10:05:28,419 DEBUG chr7:22771000-24269751: Successfully fit background model for 817,505 bp. Use segment r for 2,575 bp 2025-01-31 10:05:28,583 DEBUG chr7:24269751-25932251: Successfully fit background model for 1,562,475 bp. Use segment r for 0 bp 2025-01-31 10:05:28,765 DEBUG chr7:25932251-27159751: Successfully fit background model for 958,046 bp. Use segment r for 2,310 bp 2025-01-31 10:05:29,128 DEBUG chr10:16135751-29518751: Successfully fit background model for 12,289,526 bp. Use segment r for 144 bp 2025-01-31 10:05:29,151 DEBUG chr7:27159751-31163751: Successfully fit background model for 3,773,737 bp. Use segment r for 0 bp 2025-01-31 10:05:29,516 DEBUG chr7:31163751-33718251: Successfully fit background model for 960,230 bp. Use segment r for 26,399 bp 2025-01-31 10:05:29,525 DEBUG chr6:49187251-59310001: Successfully fit background model for 9,468,520 bp. Use segment r for 0 bp 2025-01-31 10:05:29,982 DEBUG chr7:33718251-38274251: Successfully fit background model for 4,374,575 bp. Use segment r for 0 bp 2025-01-31 10:05:30,086 DEBUG chr10:29518751-38428501: Successfully fit background model for 8,021,926 bp. Use segment r for 0 bp 2025-01-31 10:05:30,236 DEBUG chr10:38428501-39958251: Successfully fit background model for 1,414,239 bp. Use segment r for 0 bp 2025-01-31 10:05:30,551 DEBUG chr10:39958251-43474251: Successfully fit background model for 3,371,223 bp. Use segment r for 0 bp 2025-01-31 10:05:30,584 DEBUG chr6:59310001-67031251: Successfully fit background model for 6,851,081 bp. Use segment r for 706 bp 2025-01-31 10:05:30,688 DEBUG chr6:67031251-68031501: Successfully fit background model for 887,854 bp. Use segment r for 0 bp 2025-01-31 10:05:30,840 DEBUG chr7:38274251-44301751: Successfully fit background model for 4,449,643 bp. Use segment r for 267 bp 2025-01-31 10:05:30,842 DEBUG chr10:43474251-46787251: Successfully fit background model for 3,086,047 bp. Use segment r for 0 bp 2025-01-31 10:05:30,929 DEBUG chr6:68031501-70709251: Successfully fit background model for 2,081,741 bp. Use segment r for 0 bp 2025-01-31 10:05:30,969 DEBUG chr7:44301751-45555501: Successfully fit background model for 1,230,167 bp. Use segment r for 0 bp 2025-01-31 10:05:31,105 DEBUG chr6:70709251-72590751: Successfully fit background model for 1,817,486 bp. Use segment r for 0 bp 2025-01-31 10:05:31,118 DEBUG chr7:45555501-47154251: Successfully fit background model for 1,566,961 bp. Use segment r for 0 bp 2025-01-31 10:05:31,131 DEBUG chr10:46787251-50104251: Successfully fit background model for 2,899,997 bp. Use segment r for 0 bp 2025-01-31 10:05:31,243 DEBUG chr6:72590751-74110251: Successfully fit background model for 1,395,525 bp. Use segment r for 0 bp 2025-01-31 10:05:31,246 DEBUG chr7:47154251-48500251: Successfully fit background model for 1,076,936 bp. Use segment r for 0 bp 2025-01-31 10:05:31,392 DEBUG chr7:48500251-49984251: Successfully fit background model for 1,415,090 bp. Use segment r for 0 bp 2025-01-31 10:05:31,597 DEBUG chr7:49984251-52129751: Successfully fit background model for 1,871,544 bp. Use segment r for 0 bp 2025-01-31 10:05:31,823 DEBUG chr10:50104251-57021251: Successfully fit background model for 6,157,455 bp. Use segment r for 0 bp 2025-01-31 10:05:31,896 DEBUG chr6:74110251-80892251: Successfully fit background model for 6,119,597 bp. Use segment r for 0 bp 2025-01-31 10:05:31,910 DEBUG chr7:52129751-55441751: Successfully fit background model for 2,920,512 bp. Use segment r for 0 bp 2025-01-31 10:05:32,031 DEBUG chr7:55441751-56686751: Successfully fit background model for 1,081,042 bp. Use segment r for 0 bp 2025-01-31 10:05:32,096 DEBUG chr6:80892251-82997001: Successfully fit background model for 1,911,889 bp. Use segment r for 0 bp 2025-01-31 10:05:32,121 DEBUG chr10:57021251-59220751: Successfully fit background model for 1,687,055 bp. Use segment r for 1,255 bp 2025-01-31 10:05:32,155 DEBUG chr6:82997001-83562251: Successfully fit background model for 552,946 bp. Use segment r for 0 bp 2025-01-31 10:05:32,328 DEBUG chr6:83562251-85185751: Successfully fit background model for 1,550,778 bp. Use segment r for 0 bp 2025-01-31 10:05:32,575 DEBUG chr10:59220751-64046751: Successfully fit background model for 4,640,557 bp. Use segment r for 0 bp 2025-01-31 10:05:32,859 DEBUG chr10:64046751-66156001: Successfully fit background model for 1,821,793 bp. Use segment r for 100,101 bp 2025-01-31 10:05:32,936 DEBUG chr7:56686751-63009251: Successfully fit background model for 5,175,998 bp. Use segment r for 702 bp 2025-01-31 10:05:32,950 DEBUG chr6:85185751-91616251: Successfully fit background model for 6,034,070 bp. Use segment r for 0 bp 2025-01-31 10:05:33,404 DEBUG chr10:66156001-72117251: Successfully fit background model for 5,593,019 bp. Use segment r for 0 bp 2025-01-31 10:05:33,463 DEBUG chr7:63009251-68792001: Successfully fit background model for 5,456,881 bp. Use segment r for 0 bp 2025-01-31 10:05:33,703 DEBUG chr10:72117251-75498251: Successfully fit background model for 3,093,192 bp. Use segment r for 0 bp 2025-01-31 10:05:33,786 DEBUG chr7:68792001-72471751: Successfully fit background model for 3,488,342 bp. Use segment r for 0 bp 2025-01-31 10:05:34,024 DEBUG chr6:91616251-101818751: Successfully fit background model for 9,726,551 bp. Use segment r for 0 bp 2025-01-31 10:05:34,066 DEBUG chr10:75498251-79607751: Successfully fit background model for 3,814,573 bp. Use segment r for 0 bp 2025-01-31 10:05:34,124 DEBUG chr7:72471751-76272751: Successfully fit background model for 3,451,167 bp. Use segment r for 0 bp 2025-01-31 10:05:34,260 DEBUG chr10:79607751-81649751: Successfully fit background model for 2,007,145 bp. Use segment r for 0 bp 2025-01-31 10:05:34,287 DEBUG chr7:76272751-77997251: Successfully fit background model for 1,587,573 bp. Use segment r for 0 bp 2025-01-31 10:05:34,404 DEBUG chr6:101818751-106016251: Successfully fit background model for 3,789,453 bp. Use segment r for 0 bp 2025-01-31 10:05:34,406 DEBUG chr7:77997251-79226251: Successfully fit background model for 1,189,455 bp. Use segment r for 0 bp 2025-01-31 10:05:34,562 DEBUG chr7:79226251-80875251: Successfully fit background model for 1,608,455 bp. Use segment r for 0 bp 2025-01-31 10:05:34,945 DEBUG chr7:80875251-84896751: Successfully fit background model for 3,787,861 bp. Use segment r for 0 bp 2025-01-31 10:05:35,045 DEBUG chr6:106016251-112861251: Successfully fit background model for 6,205,952 bp. Use segment r for 0 bp 2025-01-31 10:05:35,126 DEBUG chr6:112861251-113604251: Successfully fit background model for 728,265 bp. Use segment r for 0 bp 2025-01-31 10:05:35,273 DEBUG chr7:84896751-88499251: Successfully fit background model for 3,199,665 bp. Use segment r for 0 bp 2025-01-31 10:05:35,461 DEBUG chr7:88499251-90536251: Successfully fit background model for 1,851,823 bp. Use segment r for 0 bp 2025-01-31 10:05:35,616 DEBUG chr7:90536251-92055751: Successfully fit background model for 1,429,813 bp. Use segment r for 0 bp 2025-01-31 10:05:35,716 DEBUG chr7:92055751-93083251: Successfully fit background model for 942,612 bp. Use segment r for 0 bp 2025-01-31 10:05:35,761 DEBUG chr10:81649751-91081501: Successfully fit background model for 8,458,619 bp. Use segment r for 1,833 bp 2025-01-31 10:05:35,788 DEBUG chr10:91081501-91190251: Successfully fit background model for 105,938 bp. Use segment r for 0 bp 2025-01-31 10:05:35,950 DEBUG chr7:93083251-95654251: Successfully fit background model for 2,278,576 bp. Use segment r for 0 bp 2025-01-31 10:05:35,978 DEBUG chr10:91190251-93043251: Successfully fit background model for 1,767,696 bp. Use segment r for 0 bp 2025-01-31 10:05:36,056 DEBUG chr6:113604251-122835251: Successfully fit background model for 8,557,741 bp. Use segment r for 0 bp 2025-01-31 10:05:36,169 DEBUG chr7:95654251-98050751: Successfully fit background model for 2,271,854 bp. Use segment r for 0 bp 2025-01-31 10:05:36,277 DEBUG chr6:122835251-124364501: Successfully fit background model for 1,068,545 bp. Use segment r for 32 bp 2025-01-31 10:05:36,365 DEBUG chr6:124364501-125270251: Successfully fit background model for 849,683 bp. Use segment r for 0 bp 2025-01-31 10:05:36,647 DEBUG chr7:98050751-103086501: Successfully fit background model for 4,859,818 bp. Use segment r for 0 bp 2025-01-31 10:05:36,670 DEBUG chr10:93043251-100109251: Successfully fit background model for 6,705,208 bp. Use segment r for 0 bp 2025-01-31 10:05:36,678 DEBUG chr6:125270251-128854751: Successfully fit background model for 3,442,489 bp. Use segment r for 0 bp 2025-01-31 10:05:37,217 DEBUG chr6:128854751-132710751: Successfully fit background model for 3,185,309 bp. Use segment r for 4,054 bp 2025-01-31 10:05:37,478 DEBUG chr7:103086501-109090751: Successfully fit background model for 4,764,469 bp. Use segment r for 4,562 bp 2025-01-31 10:05:37,655 DEBUG chr7:109090751-110979251: Successfully fit background model for 1,828,929 bp. Use segment r for 0 bp 2025-01-31 10:05:37,996 DEBUG chr6:132710751-138334751: Successfully fit background model for 5,181,508 bp. Use segment r for 63 bp 2025-01-31 10:05:38,071 DEBUG chr10:100109251-109908251: Successfully fit background model for 8,879,453 bp. Use segment r for 39 bp 2025-01-31 10:05:38,097 DEBUG chr6:138334751-139332751: Successfully fit background model for 935,258 bp. Use segment r for 0 bp 2025-01-31 10:05:39,225 DEBUG chr7:110979251-125387751: Successfully fit background model for 13,737,460 bp. Use segment r for 0 bp 2025-01-31 10:05:39,251 DEBUG chr6:139332751-149736546: Successfully fit background model for 9,571,798 bp. Use segment r for 0 bp 2025-01-31 10:05:39,327 DEBUG chr7:125387751-126247751: Successfully fit background model for 837,172 bp. Use segment r for 0 bp 2025-01-31 10:05:39,493 DEBUG chr10:109908251-123870751: Successfully fit background model for 13,037,575 bp. Use segment r for 0 bp 2025-01-31 10:05:39,506 DEBUG chr7:126247751-127968751: Successfully fit background model for 1,665,592 bp. Use segment r for 0 bp 2025-01-31 10:05:39,775 DEBUG chr10:123870751-126894251: Successfully fit background model for 2,811,685 bp. Use segment r for 0 bp 2025-01-31 10:05:39,958 DEBUG chr10:126894251-128787751: Successfully fit background model for 1,838,802 bp. Use segment r for 0 bp 2025-01-31 10:05:40,142 DEBUG chr10:128787751-130694993: Successfully fit background model for 1,516,390 bp. Use segment r for 0 bp 2025-01-31 10:05:41,007 DEBUG chr7:127968751-140805751: Successfully fit background model for 12,250,986 bp. Use segment r for 0 bp 2025-01-31 10:05:41,100 DEBUG chr7:140805751-141507751: Successfully fit background model for 685,900 bp. Use segment r for 0 bp 2025-01-31 10:05:41,469 DEBUG chr7:141507751-145441459: Successfully fit background model for 3,662,558 bp. Use segment r for 0 bp 2025-01-31 10:05:43,696 DEBUG chr8:3005000-4680751: Successfully fit background model for 1,416,309 bp. Use segment r for 1,143 bp 2025-01-31 10:05:43,944 DEBUG chr8:4680751-7376751: Successfully fit background model for 2,360,724 bp. Use segment r for 0 bp 2025-01-31 10:05:44,246 DEBUG chr8:7376751-9595751: Successfully fit background model for 2,081,703 bp. Use segment r for 600 bp 2025-01-31 10:05:44,373 DEBUG chr8:9595751-10878251: Successfully fit background model for 1,235,710 bp. Use segment r for 0 bp 2025-01-31 10:05:44,627 DEBUG chr8:10878251-13282751: Successfully fit background model for 2,350,433 bp. Use segment r for 0 bp 2025-01-31 10:05:44,968 DEBUG chr8:13282751-15798001: Successfully fit background model for 2,335,067 bp. Use segment r for 7,349 bp 2025-01-31 10:05:45,151 DEBUG chr8:15798001-17848251: Successfully fit background model for 1,901,044 bp. Use segment r for 0 bp 2025-01-31 10:05:45,531 DEBUG chr14:3931000-5131001: Successfully fit background model for 65,771 bp. Use segment r for 73 bp 2025-01-31 10:05:46,213 DEBUG chr8:17848251-25553251: Successfully fit background model for 5,624,293 bp. Use segment r for 36,849 bp 2025-01-31 10:05:46,428 DEBUG chr8:25553251-27771251: Successfully fit background model for 2,078,676 bp. Use segment r for 0 bp 2025-01-31 10:05:46,925 DEBUG chr8:27771251-33590751: Successfully fit background model for 5,271,444 bp. Use segment r for 0 bp 2025-01-31 10:05:47,232 DEBUG chr8:33590751-37005751: Successfully fit background model for 3,256,964 bp. Use segment r for 0 bp 2025-01-31 10:05:47,811 DEBUG chr14:5838000-19695751: Successfully fit background model for 10,933,490 bp. Use segment r for 10,373 bp 2025-01-31 10:05:47,866 DEBUG chr8:37005751-43704751: Successfully fit background model for 5,926,028 bp. Use segment r for 0 bp 2025-01-31 10:05:48,025 DEBUG chr14:19695751-21854251: Successfully fit background model for 2,088,718 bp. Use segment r for 0 bp 2025-01-31 10:05:48,329 DEBUG chr8:43704751-49012751: Successfully fit background model for 5,000,043 bp. Use segment r for 0 bp 2025-01-31 10:05:48,736 DEBUG chr8:49012751-53311751: Successfully fit background model for 3,907,181 bp. Use segment r for 0 bp 2025-01-31 10:05:48,774 DEBUG chr14:21854251-29707251: Successfully fit background model for 7,089,114 bp. Use segment r for 0 bp 2025-01-31 10:05:48,991 DEBUG chr14:29707251-31951751: Successfully fit background model for 2,176,948 bp. Use segment r for 0 bp 2025-01-31 10:05:49,169 DEBUG chr8:53311751-57994751: Successfully fit background model for 3,928,663 bp. Use segment r for 0 bp 2025-01-31 10:05:49,293 DEBUG chr14:31951751-35290751: Successfully fit background model for 3,199,323 bp. Use segment r for 0 bp 2025-01-31 10:05:49,353 DEBUG chr8:57994751-60017751: Successfully fit background model for 1,788,439 bp. Use segment r for 0 bp 2025-01-31 10:05:49,483 DEBUG chr14:35290751-37360001: Successfully fit background model for 1,882,881 bp. Use segment r for 0 bp 2025-01-31 10:05:49,805 DEBUG chr14:37360001-40892751: Successfully fit background model for 3,155,472 bp. Use segment r for 0 bp 2025-01-31 10:05:50,452 DEBUG chr14:40892751-45278751: Successfully fit background model for 1,503,234 bp. Use segment r for 18,586 bp 2025-01-31 10:05:50,888 DEBUG chr8:60017751-69749251: Successfully fit background model for 8,632,155 bp. Use segment r for 3,806 bp 2025-01-31 10:05:50,922 DEBUG chr14:45278751-49862001: Successfully fit background model for 4,355,786 bp. Use segment r for 0 bp 2025-01-31 10:05:51,012 DEBUG chr14:49862001-50784751: Successfully fit background model for 753,755 bp. Use segment r for 0 bp 2025-01-31 10:05:51,017 DEBUG chr8:69749251-70929751: Successfully fit background model for 1,156,272 bp. Use segment r for 0 bp 2025-01-31 10:05:51,168 DEBUG chr14:50784751-52451251: Successfully fit background model for 1,441,193 bp. Use segment r for 0 bp 2025-01-31 10:05:51,172 DEBUG chr8:70929751-72517251: Successfully fit background model for 1,340,183 bp. Use segment r for 0 bp 2025-01-31 10:05:51,399 DEBUG chr14:52451251-54359751: Successfully fit background model for 1,114,881 bp. Use segment r for 0 bp 2025-01-31 10:05:51,443 DEBUG chr8:72517251-75027751: Successfully fit background model for 2,152,688 bp. Use segment r for 0 bp 2025-01-31 10:05:51,476 DEBUG chr8:75027751-75297751: Successfully fit background model for 247,736 bp. Use segment r for 0 bp 2025-01-31 10:05:51,525 DEBUG chr14:54359751-55629501: Successfully fit background model for 1,215,876 bp. Use segment r for 0 bp 2025-01-31 10:05:51,575 DEBUG chr8:75297751-76203251: Successfully fit background model for 778,924 bp. Use segment r for 0 bp 2025-01-31 10:05:52,704 DEBUG chr8:76203251-83565251: Successfully fit background model for 6,846,626 bp. Use segment r for 0 bp 2025-01-31 10:05:52,922 DEBUG chr8:83565251-84569751: Successfully fit background model for 985,068 bp. Use segment r for 0 bp 2025-01-31 10:05:53,010 DEBUG chr8:84569751-85097251: Successfully fit background model for 518,787 bp. Use segment r for 0 bp 2025-01-31 10:05:53,012 DEBUG chr14:55629501-67332751: Successfully fit background model for 11,116,477 bp. Use segment r for 0 bp 2025-01-31 10:05:53,146 DEBUG chr14:67332751-68620751: Successfully fit background model for 1,228,042 bp. Use segment r for 0 bp 2025-01-31 10:05:53,389 DEBUG chr14:68620751-71160751: Successfully fit background model for 2,009,289 bp. Use segment r for 0 bp 2025-01-31 10:05:53,829 DEBUG chr14:71160751-75749251: Successfully fit background model for 4,240,566 bp. Use segment r for 0 bp 2025-01-31 10:05:54,023 DEBUG chr14:75749251-76963751: Successfully fit background model for 1,186,368 bp. Use segment r for 0 bp 2025-01-31 10:05:54,523 DEBUG chr14:76963751-79388251: Successfully fit background model for 2,286,293 bp. Use segment r for 0 bp 2025-01-31 10:05:54,571 DEBUG chr8:85097251-93859751: Successfully fit background model for 8,366,556 bp. Use segment r for 0 bp 2025-01-31 10:05:54,624 DEBUG chr14:79388251-79887751: Successfully fit background model for 469,009 bp. Use segment r for 0 bp 2025-01-31 10:05:55,064 DEBUG chr8:93859751-96176751: Successfully fit background model for 2,217,788 bp. Use segment r for 0 bp 2025-01-31 10:05:55,293 DEBUG chr14:79887751-86113251: Successfully fit background model for 5,569,840 bp. Use segment r for 0 bp 2025-01-31 10:05:55,459 DEBUG chr14:86113251-87619751: Successfully fit background model for 1,406,058 bp. Use segment r for 0 bp 2025-01-31 10:05:55,941 DEBUG chr8:96176751-103048251: Successfully fit background model for 6,278,490 bp. Use segment r for 0 bp 2025-01-31 10:05:56,222 DEBUG chr8:103048251-104528251: Successfully fit background model for 1,411,137 bp. Use segment r for 0 bp 2025-01-31 10:05:56,688 DEBUG chr14:87619751-98143251: Successfully fit background model for 9,556,847 bp. Use segment r for 0 bp 2025-01-31 10:05:56,753 DEBUG chr8:104528251-107382251: Successfully fit background model for 2,673,982 bp. Use segment r for 0 bp 2025-01-31 10:05:57,147 DEBUG chr14:98143251-103047251: Successfully fit background model for 4,548,219 bp. Use segment r for 0 bp 2025-01-31 10:05:57,161 DEBUG chr14:103047251-103103251: Successfully fit background model for 53,667 bp. Use segment r for 0 bp 2025-01-31 10:05:57,393 DEBUG chr8:107382251-110686251: Successfully fit background model for 3,210,389 bp. Use segment r for 0 bp 2025-01-31 10:05:57,496 DEBUG chr14:103103251-106431251: Successfully fit background model for 3,039,481 bp. Use segment r for 0 bp 2025-01-31 10:05:57,615 DEBUG chr8:110686251-111850251: Successfully fit background model for 1,133,103 bp. Use segment r for 0 bp 2025-01-31 10:05:58,095 DEBUG chr9:3002500-7712251: Successfully fit background model for 4,085,684 bp. Use segment r for 0 bp 2025-01-31 10:05:58,171 DEBUG chr9:7712251-7949751: Successfully fit background model for 217,722 bp. Use segment r for 0 bp 2025-01-31 10:05:58,278 DEBUG chr14:106431251-114137001: Successfully fit background model for 6,926,637 bp. Use segment r for 0 bp 2025-01-31 10:05:58,980 DEBUG chr14:114137001-121251751: Successfully fit background model for 6,593,010 bp. Use segment r for 0 bp 2025-01-31 10:05:58,983 DEBUG chr8:111850251-116866251: Successfully fit background model for 4,624,972 bp. Use segment r for 206,902 bp 2025-01-31 10:05:58,999 DEBUG chr9:7949751-13194751: Successfully fit background model for 4,619,139 bp. Use segment r for 0 bp 2025-01-31 10:05:59,244 DEBUG chr14:121251751-123912751: Successfully fit background model for 2,420,842 bp. Use segment r for 0 bp 2025-01-31 10:05:59,328 DEBUG chr9:13194751-15236751: Successfully fit background model for 1,850,079 bp. Use segment r for 0 bp 2025-01-31 10:05:59,350 DEBUG chr14:123912751-124902244: Successfully fit background model for 742,438 bp. Use segment r for 0 bp 2025-01-31 10:05:59,401 DEBUG chr8:116866251-119321251: Successfully fit background model for 2,390,017 bp. Use segment r for 0 bp 2025-01-31 10:05:59,955 DEBUG chr8:119321251-124134751: Successfully fit background model for 4,590,010 bp. Use segment r for 0 bp 2025-01-31 10:06:00,006 DEBUG chr9:15236751-20637251: Successfully fit background model for 4,777,892 bp. Use segment r for 0 bp 2025-01-31 10:06:00,169 DEBUG chr9:20637251-22327751: Successfully fit background model for 1,627,377 bp. Use segment r for 0 bp 2025-01-31 10:06:00,206 DEBUG chr8:124134751-126842751: Successfully fit background model for 2,631,334 bp. Use segment r for 0 bp 2025-01-31 10:06:00,317 DEBUG chr9:22327751-23724751: Successfully fit background model for 1,299,630 bp. Use segment r for 0 bp 2025-01-31 10:06:00,456 DEBUG chr8:126842751-129401213: Successfully fit background model for 2,266,089 bp. Use segment r for 0 bp 2025-01-31 10:06:00,996 DEBUG chr9:23724751-31028751: Successfully fit background model for 6,857,939 bp. Use segment r for 0 bp 2025-01-31 10:06:01,166 DEBUG chr9:31028751-32915751: Successfully fit background model for 1,814,290 bp. Use segment r for 0 bp 2025-01-31 10:06:01,351 DEBUG chr9:32915751-34991751: Successfully fit background model for 1,952,711 bp. Use segment r for 0 bp 2025-01-31 10:06:01,711 DEBUG chr9:34991751-37751751: Successfully fit background model for 2,473,377 bp. Use segment r for 2,012 bp 2025-01-31 10:06:01,909 DEBUG chr9:37751751-39886001: Successfully fit background model for 1,909,016 bp. Use segment r for 0 bp 2025-01-31 10:06:02,195 DEBUG chr9:39886001-43097751: Successfully fit background model for 3,094,386 bp. Use segment r for 0 bp 2025-01-31 10:06:02,455 DEBUG chr9:43097751-45975751: Successfully fit background model for 2,823,879 bp. Use segment r for 0 bp 2025-01-31 10:06:03,619 DEBUG chr9:45975751-56752251: Successfully fit background model for 10,251,477 bp. Use segment r for 0 bp 2025-01-31 10:06:03,889 DEBUG chr9:56752251-59752251: Successfully fit background model for 2,914,697 bp. Use segment r for 0 bp 2025-01-31 10:06:04,026 DEBUG chr9:59752251-61249751: Successfully fit background model for 1,456,550 bp. Use segment r for 0 bp 2025-01-31 10:06:04,574 DEBUG chr9:61249751-66912251: Successfully fit background model for 5,516,981 bp. Use segment r for 0 bp 2025-01-31 10:06:05,544 DEBUG chr9:66912251-76158751: Successfully fit background model for 8,797,386 bp. Use segment r for 0 bp 2025-01-31 10:06:05,631 DEBUG chr9:76158751-76995001: Successfully fit background model for 788,625 bp. Use segment r for 0 bp 2025-01-31 10:06:05,811 DEBUG chr9:76995001-78861251: Successfully fit background model for 1,702,078 bp. Use segment r for 0 bp 2025-01-31 10:06:07,695 DEBUG chr9:78861251-90110251: Successfully fit background model for 9,827,843 bp. Use segment r for 1,071 bp 2025-01-31 10:06:07,755 DEBUG chr9:90110251-90568251: Successfully fit background model for 407,565 bp. Use segment r for 0 bp 2025-01-31 10:06:08,236 DEBUG chr9:90568251-93901751: Successfully fit background model for 2,961,482 bp. Use segment r for 2,638 bp 2025-01-31 10:06:09,602 DEBUG chr9:93901751-106147251: Successfully fit background model for 11,673,684 bp. Use segment r for 0 bp 2025-01-31 10:06:09,726 DEBUG chr9:106147251-107261751: Successfully fit background model for 1,040,916 bp. Use segment r for 0 bp 2025-01-31 10:06:09,912 DEBUG chr9:107261751-109124251: Successfully fit background model for 1,772,141 bp. Use segment r for 0 bp 2025-01-31 10:06:09,981 DEBUG chr9:109124251-109862251: Successfully fit background model for 571,678 bp. Use segment r for 0 bp 2025-01-31 10:06:10,090 DEBUG chr9:109862251-110775751: Successfully fit background model for 889,189 bp. Use segment r for 0 bp 2025-01-31 10:06:11,331 DEBUG chr9:110775751-119320251: Successfully fit background model for 8,069,599 bp. Use segment r for 0 bp 2025-01-31 10:06:11,827 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:06:59,894 DEBUG chr11:3100500-3204251: Successfully fit background model for 76,714 bp. Use segment r for 0 bp 2025-01-31 10:07:00,234 DEBUG chr11:3204251-6725751: Successfully fit background model for 3,386,744 bp. Use segment r for 0 bp 2025-01-31 10:07:00,448 DEBUG chr11:6725751-9136751: Successfully fit background model for 2,172,476 bp. Use segment r for 0 bp 2025-01-31 10:07:00,627 DEBUG chr11:9136751-11132751: Successfully fit background model for 1,772,564 bp. Use segment r for 0 bp 2025-01-31 10:07:00,764 DEBUG chr11:11132751-12517251: Successfully fit background model for 1,267,477 bp. Use segment r for 0 bp 2025-01-31 10:07:01,414 DEBUG chr11:12517251-19314251: Successfully fit background model for 6,084,410 bp. Use segment r for 0 bp 2025-01-31 10:07:01,847 DEBUG chr11:19314251-24354751: Successfully fit background model for 4,758,383 bp. Use segment r for 0 bp 2025-01-31 10:07:02,259 DEBUG chr11:24354751-28869251: Successfully fit background model for 4,056,260 bp. Use segment r for 0 bp 2025-01-31 10:07:02,876 DEBUG chr11:28869251-34849001: Successfully fit background model for 5,490,557 bp. Use segment r for 0 bp 2025-01-31 10:07:03,071 DEBUG chr11:34849001-36225001: Successfully fit background model for 1,327,309 bp. Use segment r for 13,306 bp 2025-01-31 10:07:03,655 DEBUG chr11:36225001-42369751: Successfully fit background model for 5,698,832 bp. Use segment r for 0 bp 2025-01-31 10:07:04,078 DEBUG chr13:3000500-4402251: Successfully fit background model for 1,175,128 bp. Use segment r for 0 bp 2025-01-31 10:07:04,491 DEBUG chr13:4402251-8620251: Successfully fit background model for 3,742,088 bp. Use segment r for 0 bp 2025-01-31 10:07:04,573 DEBUG chr11:42369751-48773251: Successfully fit background model for 5,951,549 bp. Use segment r for 3,319 bp 2025-01-31 10:07:04,597 DEBUG chr11:48773251-48875251: Successfully fit background model for 99,033 bp. Use segment r for 0 bp 2025-01-31 10:07:05,015 DEBUG chr11:48875251-51571251: Successfully fit background model for 2,437,228 bp. Use segment r for 104 bp 2025-01-31 10:07:05,098 DEBUG chr11:51571251-52340751: Successfully fit background model for 730,953 bp. Use segment r for 0 bp 2025-01-31 10:07:05,109 DEBUG chr13:8620251-14651251: Successfully fit background model for 5,144,886 bp. Use segment r for 0 bp 2025-01-31 10:07:05,405 DEBUG chr11:52340751-55596251: Successfully fit background model for 3,146,957 bp. Use segment r for 0 bp 2025-01-31 10:07:05,534 DEBUG chr11:55596251-56814751: Successfully fit background model for 1,121,004 bp. Use segment r for 0 bp 2025-01-31 10:07:05,755 DEBUG chr11:56814751-58902751: Successfully fit background model for 1,978,631 bp. Use segment r for 0 bp 2025-01-31 10:07:05,757 DEBUG chr13:14651251-21159001: Successfully fit background model for 5,863,330 bp. Use segment r for 0 bp 2025-01-31 10:07:05,827 DEBUG chr13:21159001-21709751: Successfully fit background model for 513,136 bp. Use segment r for 0 bp 2025-01-31 10:07:05,871 DEBUG chr13:21709751-22052251: Successfully fit background model for 286,979 bp. Use segment r for 0 bp 2025-01-31 10:07:06,020 DEBUG chr13:22052251-23284251: Successfully fit background model for 925,483 bp. Use segment r for 0 bp 2025-01-31 10:07:06,075 DEBUG chr13:23284251-23765751: Successfully fit background model for 446,443 bp. Use segment r for 0 bp 2025-01-31 10:07:06,249 DEBUG chr13:23765751-25485751: Successfully fit background model for 1,611,440 bp. Use segment r for 0 bp 2025-01-31 10:07:06,271 DEBUG chr11:58902751-62457501: Successfully fit background model for 3,377,834 bp. Use segment r for 1,411 bp 2025-01-31 10:07:06,487 DEBUG chr13:25485751-27955501: Successfully fit background model for 2,214,098 bp. Use segment r for 0 bp 2025-01-31 10:07:06,952 DEBUG chr11:62457501-68965751: Successfully fit background model for 6,279,945 bp. Use segment r for 0 bp 2025-01-31 10:07:07,075 DEBUG chr11:68965751-70030251: Successfully fit background model for 1,046,025 bp. Use segment r for 0 bp 2025-01-31 10:07:07,192 DEBUG chr11:70030251-71086001: Successfully fit background model for 1,009,508 bp. Use segment r for 0 bp 2025-01-31 10:07:07,265 DEBUG chr12:3000500-5314751: Successfully fit background model for 2,121,707 bp. Use segment r for 0 bp 2025-01-31 10:07:07,422 DEBUG chr12:5314751-6818251: Successfully fit background model for 1,347,573 bp. Use segment r for 0 bp 2025-01-31 10:07:07,431 DEBUG chr11:71086001-73300251: Successfully fit background model for 2,098,918 bp. Use segment r for 0 bp 2025-01-31 10:07:07,512 DEBUG chr11:73300251-74031751: Successfully fit background model for 599,839 bp. Use segment r for 0 bp 2025-01-31 10:07:07,598 DEBUG chr11:74031751-74827751: Successfully fit background model for 731,620 bp. Use segment r for 0 bp 2025-01-31 10:07:07,610 DEBUG chr11:74827751-74898751: Successfully fit background model for 63,292 bp. Use segment r for 0 bp 2025-01-31 10:07:07,695 DEBUG chr12:6818251-9672751: Successfully fit background model for 2,645,997 bp. Use segment r for 0 bp 2025-01-31 10:07:08,112 DEBUG chr11:74898751-79607251: Successfully fit background model for 4,582,787 bp. Use segment r for 0 bp 2025-01-31 10:07:08,192 DEBUG chr15:3050500-5087751: Successfully fit background model for 1,734,031 bp. Use segment r for 0 bp 2025-01-31 10:07:08,273 DEBUG chr12:9672751-15256751: Successfully fit background model for 5,044,503 bp. Use segment r for 0 bp 2025-01-31 10:07:08,623 DEBUG chr11:79607251-84566751: Successfully fit background model for 4,740,690 bp. Use segment r for 0 bp 2025-01-31 10:07:09,123 DEBUG chr11:84566751-89599251: Successfully fit background model for 4,874,994 bp. Use segment r for 0 bp 2025-01-31 10:07:09,138 DEBUG chr15:5087751-13444751: Successfully fit background model for 7,697,840 bp. Use segment r for 0 bp 2025-01-31 10:07:09,556 DEBUG chr11:89599251-94126251: Successfully fit background model for 4,229,183 bp. Use segment r for 0 bp 2025-01-31 10:07:09,928 DEBUG chr12:15256751-24562251: Successfully fit background model for 4,754,272 bp. Use segment r for 6,668 bp 2025-01-31 10:07:09,975 DEBUG chr12:24562251-24871251: Successfully fit background model for 294,650 bp. Use segment r for 0 bp 2025-01-31 10:07:10,075 DEBUG chr11:94126251-99513251: Successfully fit background model for 5,265,249 bp. Use segment r for 0 bp 2025-01-31 10:07:10,136 DEBUG chr13:27955501-48436251: Successfully fit background model for 19,209,626 bp. Use segment r for 791 bp 2025-01-31 10:07:10,158 DEBUG chr11:99513251-100252751: Successfully fit background model for 675,786 bp. Use segment r for 0 bp 2025-01-31 10:07:10,240 DEBUG chr13:48436251-49219751: Successfully fit background model for 771,797 bp. Use segment r for 0 bp 2025-01-31 10:07:10,432 DEBUG chr15:13444751-25804751: Successfully fit background model for 11,055,626 bp. Use segment r for 0 bp 2025-01-31 10:07:10,679 DEBUG chr12:24871251-31942751: Successfully fit background model for 6,727,524 bp. Use segment r for 0 bp 2025-01-31 10:07:10,744 DEBUG chr13:49219751-54439751: Successfully fit background model for 4,613,371 bp. Use segment r for 0 bp 2025-01-31 10:07:10,820 DEBUG chr12:31942751-33260251: Successfully fit background model for 1,228,999 bp. Use segment r for 0 bp 2025-01-31 10:07:10,866 DEBUG chr13:54439751-55602001: Successfully fit background model for 1,120,552 bp. Use segment r for 0 bp 2025-01-31 10:07:10,918 DEBUG chr11:100252751-108497251: Successfully fit background model for 7,973,498 bp. Use segment r for 0 bp 2025-01-31 10:07:11,116 DEBUG chr13:55602001-58004751: Successfully fit background model for 2,346,934 bp. Use segment r for 0 bp 2025-01-31 10:07:11,130 DEBUG chr11:108497251-110665751: Successfully fit background model for 2,083,121 bp. Use segment r for 0 bp 2025-01-31 10:07:11,238 DEBUG chr15:25804751-34010251: Successfully fit background model for 7,455,312 bp. Use segment r for 0 bp 2025-01-31 10:07:11,296 DEBUG chr11:110665751-112457251: Successfully fit background model for 1,705,711 bp. Use segment r for 0 bp 2025-01-31 10:07:11,393 DEBUG chr13:58004751-60879251: Successfully fit background model for 2,763,311 bp. Use segment r for 0 bp 2025-01-31 10:07:11,445 DEBUG chr15:34010251-36122251: Successfully fit background model for 1,929,683 bp. Use segment r for 0 bp 2025-01-31 10:07:11,551 DEBUG chr15:36122251-37089751: Successfully fit background model for 920,768 bp. Use segment r for 0 bp 2025-01-31 10:07:11,563 DEBUG chr11:112457251-115153251: Successfully fit background model for 2,603,079 bp. Use segment r for 0 bp 2025-01-31 10:07:11,683 DEBUG chr15:37089751-38283751: Successfully fit background model for 1,136,868 bp. Use segment r for 0 bp 2025-01-31 10:07:11,699 DEBUG chr15:38283751-38388251: Successfully fit background model for 103,260 bp. Use segment r for 0 bp 2025-01-31 10:07:11,721 DEBUG chr13:60879251-63014751: Successfully fit background model for 1,585,692 bp. Use segment r for 30,925 bp 2025-01-31 10:07:11,778 DEBUG chr11:115153251-117186251: Successfully fit background model for 1,964,783 bp. Use segment r for 0 bp 2025-01-31 10:07:11,894 DEBUG chr13:63014751-64792251: Successfully fit background model for 1,664,006 bp. Use segment r for 0 bp 2025-01-31 10:07:12,248 DEBUG chr11:117186251-122082543: Successfully fit background model for 4,648,922 bp. Use segment r for 0 bp 2025-01-31 10:07:12,355 DEBUG chr15:38388251-44933751: Successfully fit background model for 5,884,689 bp. Use segment r for 0 bp 2025-01-31 10:07:12,590 DEBUG chr13:64792251-69481751: Successfully fit background model for 2,870,959 bp. Use segment r for 7,175 bp 2025-01-31 10:07:12,610 DEBUG chr13:69481751-69562751: Successfully fit background model for 80,086 bp. Use segment r for 0 bp 2025-01-31 10:07:12,905 DEBUG chr15:44933751-50817251: Successfully fit background model for 5,262,471 bp. Use segment r for 0 bp 2025-01-31 10:07:12,924 DEBUG chr15:50817251-50890751: Successfully fit background model for 73,431 bp. Use segment r for 0 bp 2025-01-31 10:07:12,977 DEBUG chr13:69562751-73246751: Successfully fit background model for 3,467,825 bp. Use segment r for 0 bp 2025-01-31 10:07:13,135 DEBUG chr13:73246751-74865751: Successfully fit background model for 1,510,595 bp. Use segment r for 0 bp 2025-01-31 10:07:13,447 DEBUG chr13:74865751-78162251: Successfully fit background model for 2,931,381 bp. Use segment r for 0 bp 2025-01-31 10:07:13,466 DEBUG chr13:78162251-78230251: Successfully fit background model for 66,356 bp. Use segment r for 0 bp 2025-01-31 10:07:13,597 DEBUG chr15:50890751-57588251: Successfully fit background model for 6,122,568 bp. Use segment r for 0 bp 2025-01-31 10:07:13,726 DEBUG chr13:78230251-80881751: Successfully fit background model for 2,380,818 bp. Use segment r for 0 bp 2025-01-31 10:07:13,739 DEBUG chr13:80881751-80933251: Successfully fit background model for 51,270 bp. Use segment r for 0 bp 2025-01-31 10:07:13,786 DEBUG chr15:57588251-59504251: Successfully fit background model for 1,855,412 bp. Use segment r for 0 bp 2025-01-31 10:07:13,823 DEBUG chr13:80933251-81625501: Successfully fit background model for 650,614 bp. Use segment r for 0 bp 2025-01-31 10:07:13,837 DEBUG chr13:81625501-81714751: Successfully fit background model for 86,892 bp. Use segment r for 0 bp 2025-01-31 10:07:13,888 DEBUG chr12:33260251-51469001: Successfully fit background model for 16,349,009 bp. Use segment r for 136,613 bp 2025-01-31 10:07:14,040 DEBUG chr13:81714751-83687001: Successfully fit background model for 1,812,178 bp. Use segment r for 0 bp 2025-01-31 10:07:14,052 DEBUG chr13:83687001-83738751: Successfully fit background model for 44,739 bp. Use segment r for 0 bp 2025-01-31 10:07:14,229 DEBUG chr15:59504251-63987251: Successfully fit background model for 4,066,804 bp. Use segment r for 0 bp 2025-01-31 10:07:14,268 DEBUG chr15:63987251-64298251: Successfully fit background model for 307,706 bp. Use segment r for 0 bp 2025-01-31 10:07:14,479 DEBUG chr15:64298251-66665751: Successfully fit background model for 2,130,627 bp. Use segment r for 0 bp 2025-01-31 10:07:14,557 DEBUG chr15:66665751-67371751: Successfully fit background model for 660,737 bp. Use segment r for 0 bp 2025-01-31 10:07:14,657 DEBUG chr12:51469001-59723501: Successfully fit background model for 7,451,296 bp. Use segment r for 0 bp 2025-01-31 10:07:14,794 DEBUG chr13:83738751-90885751: Successfully fit background model for 6,385,031 bp. Use segment r for 0 bp 2025-01-31 10:07:15,033 DEBUG chr12:59723501-63906501: Successfully fit background model for 3,686,418 bp. Use segment r for 0 bp 2025-01-31 10:07:15,089 DEBUG chr15:67371751-72970751: Successfully fit background model for 5,169,074 bp. Use segment r for 0 bp 2025-01-31 10:07:15,122 DEBUG chr15:72970751-73190251: Successfully fit background model for 209,337 bp. Use segment r for 0 bp 2025-01-31 10:07:15,184 DEBUG chr12:63906501-65492251: Successfully fit background model for 1,425,866 bp. Use segment r for 0 bp 2025-01-31 10:07:15,348 DEBUG chr13:90885751-96933501: Successfully fit background model for 5,698,269 bp. Use segment r for 0 bp 2025-01-31 10:07:15,381 DEBUG chr15:73190251-75655751: Successfully fit background model for 2,300,621 bp. Use segment r for 0 bp 2025-01-31 10:07:15,523 DEBUG chr12:65492251-69154751: Successfully fit background model for 3,307,432 bp. Use segment r for 0 bp 2025-01-31 10:07:15,789 DEBUG chr13:96933501-101690251: Successfully fit background model for 4,460,580 bp. Use segment r for 0 bp 2025-01-31 10:07:15,823 DEBUG chr12:69154751-72108251: Successfully fit background model for 2,834,872 bp. Use segment r for 0 bp 2025-01-31 10:07:16,011 DEBUG chr15:75655751-82197251: Successfully fit background model for 6,263,488 bp. Use segment r for 0 bp 2025-01-31 10:07:16,198 DEBUG chr12:72108251-76176251: Successfully fit background model for 3,859,845 bp. Use segment r for 0 bp 2025-01-31 10:07:16,268 DEBUG chr12:76176251-76765501: Successfully fit background model for 548,984 bp. Use segment r for 0 bp 2025-01-31 10:07:16,344 DEBUG chr15:82197251-85784751: Successfully fit background model for 3,418,112 bp. Use segment r for 0 bp 2025-01-31 10:07:16,575 DEBUG chr12:76765501-79965751: Successfully fit background model for 3,013,137 bp. Use segment r for 0 bp 2025-01-31 10:07:16,624 DEBUG chr15:85784751-88716251: Successfully fit background model for 2,850,838 bp. Use segment r for 0 bp 2025-01-31 10:07:16,655 DEBUG chr12:79965751-80721751: Successfully fit background model for 733,561 bp. Use segment r for 0 bp 2025-01-31 10:07:16,727 DEBUG chr15:88716251-89768251: Successfully fit background model for 992,112 bp. Use segment r for 0 bp 2025-01-31 10:07:16,841 DEBUG chr13:101690251-111679251: Successfully fit background model for 9,278,182 bp. Use segment r for 0 bp 2025-01-31 10:07:16,862 DEBUG chr12:80721751-83015251: Successfully fit background model for 2,117,789 bp. Use segment r for 0 bp 2025-01-31 10:07:16,960 DEBUG chr13:111679251-112741251: Successfully fit background model for 1,025,572 bp. Use segment r for 0 bp 2025-01-31 10:07:17,038 DEBUG chr15:89768251-93260251: Successfully fit background model for 3,266,460 bp. Use segment r for 0 bp 2025-01-31 10:07:17,192 DEBUG chr13:112741251-115292001: Successfully fit background model for 2,417,298 bp. Use segment r for 0 bp 2025-01-31 10:07:17,241 DEBUG chr12:83015251-87146751: Successfully fit background model for 4,027,932 bp. Use segment r for 0 bp 2025-01-31 10:07:17,543 DEBUG chr15:93260251-98499751: Successfully fit background model for 4,988,331 bp. Use segment r for 0 bp 2025-01-31 10:07:17,588 DEBUG chr13:115292001-119406751: Successfully fit background model for 3,760,613 bp. Use segment r for 0 bp 2025-01-31 10:07:17,690 DEBUG chr13:119406751-120421639: Successfully fit background model for 422,427 bp. Use segment r for 0 bp 2025-01-31 10:07:17,722 DEBUG chr12:87146751-92267251: Successfully fit background model for 4,364,321 bp. Use segment r for 0 bp 2025-01-31 10:07:17,999 DEBUG chr15:98499751-103366751: Successfully fit background model for 4,713,409 bp. Use segment r for 0 bp 2025-01-31 10:07:18,071 DEBUG chr15:103366751-104043685: Successfully fit background model for 430,154 bp. Use segment r for 0 bp 2025-01-31 10:07:18,172 DEBUG chr12:92267251-97408751: Successfully fit background model for 4,629,380 bp. Use segment r for 0 bp 2025-01-31 10:07:18,354 DEBUG chr12:97408751-99265751: Successfully fit background model for 1,721,476 bp. Use segment r for 0 bp 2025-01-31 10:07:18,976 DEBUG chr12:99265751-105867251: Successfully fit background model for 6,198,125 bp. Use segment r for 0 bp 2025-01-31 10:07:19,433 DEBUG chr12:105867251-110365751: Successfully fit background model for 4,357,718 bp. Use segment r for 0 bp 2025-01-31 10:07:19,755 DEBUG chr12:110365751-113887251: Successfully fit background model for 3,335,371 bp. Use segment r for 0 bp 2025-01-31 10:07:19,987 DEBUG chr12:113887251-116260751: Successfully fit background model for 1,945,138 bp. Use segment r for 0 bp 2025-01-31 10:07:20,164 DEBUG chr16:3101000-3845751: Successfully fit background model for 381,064 bp. Use segment r for 636 bp 2025-01-31 10:07:20,319 DEBUG chr16:3845751-5432751: Successfully fit background model for 1,523,633 bp. Use segment r for 0 bp 2025-01-31 10:07:20,372 DEBUG chr12:116260751-120129022: Successfully fit background model for 3,471,862 bp. Use segment r for 0 bp 2025-01-31 10:07:20,619 DEBUG chr16:5432751-8402751: Successfully fit background model for 2,822,314 bp. Use segment r for 0 bp 2025-01-31 10:07:20,705 DEBUG chr16:8402751-9218751: Successfully fit background model for 776,000 bp. Use segment r for 0 bp 2025-01-31 10:07:20,814 DEBUG chr16:9218751-10372251: Successfully fit background model for 1,091,062 bp. Use segment r for 0 bp 2025-01-31 10:07:21,387 DEBUG chr16:10372251-14538251: Successfully fit background model for 3,939,139 bp. Use segment r for 0 bp 2025-01-31 10:07:21,635 DEBUG chr16:14538251-17123751: Successfully fit background model for 2,262,286 bp. Use segment r for 0 bp 2025-01-31 10:07:21,829 DEBUG chr16:17123751-19057251: Successfully fit background model for 1,857,636 bp. Use segment r for 0 bp 2025-01-31 10:07:21,913 DEBUG chr16:19057251-19650751: Successfully fit background model for 461,809 bp. Use segment r for 0 bp 2025-01-31 10:07:22,330 DEBUG chr16:19650751-23478251: Successfully fit background model for 3,576,409 bp. Use segment r for 0 bp 2025-01-31 10:07:22,984 DEBUG chr16:23478251-29167501: Successfully fit background model for 5,334,095 bp. Use segment r for 0 bp 2025-01-31 10:07:24,601 DEBUG chr16:29167501-39005251: Successfully fit background model for 9,400,522 bp. Use segment r for 0 bp 2025-01-31 10:07:26,059 DEBUG chr16:39005251-50739751: Successfully fit background model for 10,800,019 bp. Use segment r for 0 bp 2025-01-31 10:07:26,527 DEBUG chr16:50739751-55820751: Successfully fit background model for 4,537,724 bp. Use segment r for 0 bp 2025-01-31 10:07:26,798 DEBUG chr16:55820751-58444751: Successfully fit background model for 2,353,723 bp. Use segment r for 0 bp 2025-01-31 10:07:26,841 DEBUG chr16:58444751-58803751: Successfully fit background model for 324,720 bp. Use segment r for 0 bp 2025-01-31 10:07:27,386 DEBUG chr16:58803751-64207751: Successfully fit background model for 4,793,431 bp. Use segment r for 0 bp 2025-01-31 10:07:30,599 DEBUG chr16:64207751-87421751: Successfully fit background model for 21,096,246 bp. Use segment r for 0 bp 2025-01-31 10:07:30,669 DEBUG chr16:87421751-87670751: Successfully fit background model for 243,160 bp. Use segment r for 0 bp 2025-01-31 10:07:30,892 DEBUG chr16:87670751-89760751: Successfully fit background model for 1,939,108 bp. Use segment r for 0 bp 2025-01-31 10:07:31,431 DEBUG chr16:89760751-94480751: Successfully fit background model for 4,577,561 bp. Use segment r for 0 bp 2025-01-31 10:07:31,770 DEBUG chr16:94480751-98207768: Successfully fit background model for 3,468,178 bp. Use segment r for 0 bp 2025-01-31 10:07:31,988 DEBUG chr17:3000000-15861251: Successfully fit background model for 10,838,457 bp. Use segment r for 0 bp 2025-01-31 10:07:32,190 DEBUG chr17:15861251-17868751: Successfully fit background model for 1,640,850 bp. Use segment r for 0 bp 2025-01-31 10:07:32,573 DEBUG chr17:17868751-20529251: Successfully fit background model for 2,381,400 bp. Use segment r for 1,102 bp 2025-01-31 10:07:32,857 DEBUG chr17:20529251-23531751: Successfully fit background model for 2,301,237 bp. Use segment r for 0 bp 2025-01-31 10:07:33,401 DEBUG chr17:23531751-29345251: Successfully fit background model for 5,626,362 bp. Use segment r for 0 bp 2025-01-31 10:07:33,849 DEBUG chr17:29345251-33810251: Successfully fit background model for 4,185,797 bp. Use segment r for 0 bp 2025-01-31 10:07:34,147 DEBUG chr17:33810251-37094751: Successfully fit background model for 2,951,198 bp. Use segment r for 0 bp 2025-01-31 10:07:34,971 DEBUG chr17:37094751-44197751: Successfully fit background model for 6,197,798 bp. Use segment r for 0 bp 2025-01-31 10:07:35,101 DEBUG chr17:44197751-45501751: Successfully fit background model for 1,256,513 bp. Use segment r for 0 bp 2025-01-31 10:07:35,378 DEBUG chr17:45501751-48604751: Successfully fit background model for 3,003,850 bp. Use segment r for 0 bp 2025-01-31 10:07:36,104 DEBUG chr17:48604751-55931251: Successfully fit background model for 6,688,957 bp. Use segment r for 0 bp 2025-01-31 10:07:36,248 DEBUG chr17:55931251-57362751: Successfully fit background model for 1,401,857 bp. Use segment r for 0 bp 2025-01-31 10:07:36,659 DEBUG chr17:57362751-61539751: Successfully fit background model for 3,719,880 bp. Use segment r for 0 bp 2025-01-31 10:07:38,614 DEBUG chr17:61539751-75961251: Successfully fit background model for 13,543,341 bp. Use segment r for 0 bp 2025-01-31 10:07:38,849 DEBUG chr17:75961251-77860751: Successfully fit background model for 1,730,685 bp. Use segment r for 0 bp 2025-01-31 10:07:39,177 DEBUG chr17:77860751-81279751: Successfully fit background model for 3,265,207 bp. Use segment r for 0 bp 2025-01-31 10:07:39,307 DEBUG chr17:81279751-82496251: Successfully fit background model for 1,113,353 bp. Use segment r for 0 bp 2025-01-31 10:07:39,449 DEBUG chr17:82496251-83862001: Successfully fit background model for 1,255,640 bp. Use segment r for 0 bp 2025-01-31 10:07:40,228 DEBUG chr17:83862001-89128751: Successfully fit background model for 5,098,735 bp. Use segment r for 0 bp 2025-01-31 10:07:40,843 DEBUG chr17:89128751-94987271: Successfully fit background model for 5,201,677 bp. Use segment r for 0 bp 2025-01-31 10:08:25,540 DEBUG chr19:3087500-5364251: Successfully fit background model for 2,153,280 bp. Use segment r for 0 bp 2025-01-31 10:08:25,758 DEBUG chr19:5364251-7619251: Successfully fit background model for 2,080,515 bp. Use segment r for 0 bp 2025-01-31 10:08:25,823 DEBUG chr19:7619251-8237251: Successfully fit background model for 462,469 bp. Use segment r for 0 bp 2025-01-31 10:08:26,078 DEBUG chr19:8237251-10994751: Successfully fit background model for 2,314,266 bp. Use segment r for 0 bp 2025-01-31 10:08:26,211 DEBUG chr18:3000500-16821751: Successfully fit background model for 12,573,605 bp. Use segment r for 0 bp 2025-01-31 10:08:26,480 DEBUG chr18:16821751-19542251: Successfully fit background model for 2,393,555 bp. Use segment r for 0 bp 2025-01-31 10:08:26,508 DEBUG chr19:10994751-15557251: Successfully fit background model for 4,135,181 bp. Use segment r for 0 bp 2025-01-31 10:08:26,701 DEBUG chr19:15557251-17539751: Successfully fit background model for 1,900,193 bp. Use segment r for 0 bp 2025-01-31 10:08:27,175 DEBUG chr18:19542251-26122751: Successfully fit background model for 6,095,572 bp. Use segment r for 0 bp 2025-01-31 10:08:27,267 DEBUG chr19:17539751-22745251: Successfully fit background model for 4,839,127 bp. Use segment r for 0 bp 2025-01-31 10:08:27,468 DEBUG chr19:22745251-24897751: Successfully fit background model for 2,082,820 bp. Use segment r for 0 bp 2025-01-31 10:08:27,650 DEBUG chr18:26122751-31115751: Successfully fit background model for 4,609,676 bp. Use segment r for 0 bp 2025-01-31 10:08:27,917 DEBUG chr19:24897751-29019751: Successfully fit background model for 3,934,779 bp. Use segment r for 0 bp 2025-01-31 10:08:27,934 DEBUG chr18:31115751-34047251: Successfully fit background model for 2,698,050 bp. Use segment r for 0 bp 2025-01-31 10:08:28,046 DEBUG chr19:29019751-30372251: Successfully fit background model for 1,305,725 bp. Use segment r for 0 bp 2025-01-31 10:08:28,224 DEBUG chr19:30372251-32179751: Successfully fit background model for 1,700,980 bp. Use segment r for 0 bp 2025-01-31 10:08:28,252 DEBUG chr18:34047251-36810751: Successfully fit background model for 2,695,773 bp. Use segment r for 0 bp 2025-01-31 10:08:28,310 DEBUG chr19:32179751-33023751: Successfully fit background model for 807,026 bp. Use segment r for 0 bp 2025-01-31 10:08:28,359 DEBUG chr18:36810751-37814251: Successfully fit background model for 872,819 bp. Use segment r for 0 bp 2025-01-31 10:08:28,419 DEBUG chr18:37814251-38239251: Successfully fit background model for 419,271 bp. Use segment r for 0 bp 2025-01-31 10:08:28,567 DEBUG chr19:33023751-35735251: Successfully fit background model for 2,393,886 bp. Use segment r for 0 bp 2025-01-31 10:08:28,872 DEBUG chr19:35735251-38982251: Successfully fit background model for 3,122,321 bp. Use segment r for 0 bp 2025-01-31 10:08:28,996 DEBUG chr19:38982251-39818251: Successfully fit background model for 616,708 bp. Use segment r for 503 bp 2025-01-31 10:08:29,162 DEBUG chr19:39818251-41680501: Successfully fit background model for 1,729,115 bp. Use segment r for 0 bp 2025-01-31 10:08:29,288 DEBUG chr19:41680501-42943751: Successfully fit background model for 1,235,875 bp. Use segment r for 0 bp 2025-01-31 10:08:29,338 DEBUG chr19:42943751-43436251: Successfully fit background model for 447,866 bp. Use segment r for 0 bp 2025-01-31 10:08:29,683 DEBUG chr19:43436251-46954751: Successfully fit background model for 3,418,481 bp. Use segment r for 0 bp 2025-01-31 10:08:29,851 DEBUG chr19:46954751-48703751: Successfully fit background model for 1,690,737 bp. Use segment r for 0 bp 2025-01-31 10:08:29,943 DEBUG chr18:38239251-50486751: Successfully fit background model for 11,348,867 bp. Use segment r for 0 bp 2025-01-31 10:08:30,198 DEBUG chr19:48703751-52330001: Successfully fit background model for 3,339,828 bp. Use segment r for 0 bp 2025-01-31 10:08:30,529 DEBUG chr18:50486751-56551251: Successfully fit background model for 5,604,233 bp. Use segment r for 0 bp 2025-01-31 10:08:30,567 DEBUG chr18:56551251-56761751: Successfully fit background model for 204,566 bp. Use segment r for 0 bp 2025-01-31 10:08:30,924 DEBUG chr18:56761751-60480751: Successfully fit background model for 3,455,838 bp. Use segment r for 0 bp 2025-01-31 10:08:31,060 DEBUG chr18:60480751-61908751: Successfully fit background model for 1,402,145 bp. Use segment r for 0 bp 2025-01-31 10:08:31,141 DEBUG chr19:52330001-61431566: Successfully fit background model for 8,633,837 bp. Use segment r for 0 bp 2025-01-31 10:08:31,549 DEBUG chr18:61908751-67196751: Successfully fit background model for 5,043,292 bp. Use segment r for 0 bp 2025-01-31 10:08:31,609 DEBUG chr18:67196751-67701251: Successfully fit background model for 494,437 bp. Use segment r for 0 bp 2025-01-31 10:08:31,960 DEBUG chr18:67701251-71344751: Successfully fit background model for 3,399,236 bp. Use segment r for 0 bp 2025-01-31 10:08:32,163 DEBUG chr18:71344751-73567001: Successfully fit background model for 2,057,047 bp. Use segment r for 0 bp 2025-01-31 10:08:32,588 DEBUG chr18:73567001-78129751: Successfully fit background model for 4,289,673 bp. Use segment r for 0 bp 2025-01-31 10:08:32,763 DEBUG chr18:78129751-80080751: Successfully fit background model for 1,810,896 bp. Use segment r for 0 bp 2025-01-31 10:08:32,801 DEBUG chr18:80080751-80441251: Successfully fit background model for 353,566 bp. Use segment r for 0 bp 2025-01-31 10:08:33,174 DEBUG chr18:80441251-84846251: Successfully fit background model for 4,174,021 bp. Use segment r for 0 bp 2025-01-31 10:08:33,200 DEBUG chr18:84846251-84983751: Successfully fit background model for 135,238 bp. Use segment r for 0 bp 2025-01-31 10:08:33,767 DEBUG chr18:84983751-90702639: Successfully fit background model for 4,848,809 bp. Use segment r for 0 bp 2025-01-31 10:09:41,196 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:09:41,199 INFO Calculating per-bp p-values 2025-01-31 10:09:41,200 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:09:41,258 DEBUG chr1: Calculating p-values 2025-01-31 10:09:41,261 DEBUG chr3: Calculating p-values 2025-01-31 10:09:41,262 DEBUG chr2: Calculating p-values 2025-01-31 10:09:41,263 DEBUG chrX: Calculating p-values 2025-01-31 10:09:41,263 DEBUG chr4: Calculating p-values 2025-01-31 10:09:41,275 DEBUG chr5: Calculating p-values 2025-01-31 10:10:17,454 DEBUG Saving p-values for chrX 2025-01-31 10:10:19,093 DEBUG Saving p-values for chr3 2025-01-31 10:10:23,798 DEBUG Saving p-values for chr5 2025-01-31 10:10:25,343 DEBUG Saving p-values for chr4 2025-01-31 10:10:31,352 DEBUG Saving p-values for chr2 2025-01-31 10:10:38,700 DEBUG Saving p-values for chr1 2025-01-31 10:10:48,856 DEBUG chr6: Calculating p-values 2025-01-31 10:10:50,712 DEBUG chr7: Calculating p-values 2025-01-31 10:10:53,272 DEBUG chr10: Calculating p-values 2025-01-31 10:10:56,126 DEBUG chr8: Calculating p-values 2025-01-31 10:11:08,880 DEBUG chr14: Calculating p-values 2025-01-31 10:11:17,441 DEBUG chr9: Calculating p-values 2025-01-31 10:11:22,560 DEBUG Saving p-values for chr6 2025-01-31 10:11:22,901 DEBUG Saving p-values for chr10 2025-01-31 10:11:29,841 DEBUG Saving p-values for chr8 2025-01-31 10:11:30,171 DEBUG Saving p-values for chr7 2025-01-31 10:11:35,123 DEBUG Saving p-values for chr14 2025-01-31 10:11:43,058 DEBUG chr11: Calculating p-values 2025-01-31 10:11:49,735 DEBUG chr13: Calculating p-values 2025-01-31 10:11:50,250 DEBUG Saving p-values for chr9 2025-01-31 10:11:52,606 DEBUG chr12: Calculating p-values 2025-01-31 10:11:55,269 DEBUG chr15: Calculating p-values 2025-01-31 10:11:56,757 DEBUG chr16: Calculating p-values 2025-01-31 10:12:14,165 DEBUG chr17: Calculating p-values 2025-01-31 10:12:20,399 DEBUG Saving p-values for chr12 2025-01-31 10:12:20,416 DEBUG Saving p-values for chr16 2025-01-31 10:12:25,518 DEBUG Saving p-values for chr11 2025-01-31 10:12:26,367 DEBUG Saving p-values for chr13 2025-01-31 10:12:28,354 DEBUG Saving p-values for chr15 2025-01-31 10:12:36,183 DEBUG chrY: Calculating p-values 2025-01-31 10:12:40,533 DEBUG chr18: Calculating p-values 2025-01-31 10:12:40,916 DEBUG chr19: Calculating p-values 2025-01-31 10:12:41,092 DEBUG Saving p-values for chr17 2025-01-31 10:12:58,981 DEBUG Saving p-values for chr18 2025-01-31 10:12:59,070 DEBUG Saving p-values for chr19 2025-01-31 10:13:15,451 DEBUG Results of calc_pvals emitted. 2025-01-31 10:13:15,452 INFO Converting threshold values to bigwig 2025-01-31 10:13:15,452 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:13:32,783 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:14:04,210 INFO Converting background quantile values to bigwig 2025-01-31 10:14:04,210 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:14:43,312 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:15:13,207 INFO Calculating per-bp FDRs 2025-01-31 10:15:13,209 DEBUG AG81952: Extracting raw P-values 2025-01-31 10:15:55,347 DEBUG AG81952: Computing FDR 2025-01-31 10:16:14,998 DEBUG AG81952: Saving FDRs to parquet 2025-01-31 10:18:20,951 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:18:20,954 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:18:20,955 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:18:24,714 DEBUG chr3: Calling hotspots 2025-01-31 10:18:24,850 DEBUG chr4: Calling hotspots 2025-01-31 10:18:24,930 DEBUG chrX: Calling hotspots 2025-01-31 10:18:24,986 DEBUG chr5: Calling hotspots 2025-01-31 10:18:25,370 DEBUG chr1: Calling hotspots 2025-01-31 10:18:25,453 DEBUG chr2: Calling hotspots 2025-01-31 10:18:31,865 DEBUG chr3: 3935 hotspots called 2025-01-31 10:18:32,315 DEBUG chr5: 4807 hotspots called 2025-01-31 10:18:32,386 DEBUG chr4: 5028 hotspots called 2025-01-31 10:18:33,853 DEBUG chrX: 2226 hotspots called 2025-01-31 10:18:34,847 DEBUG chr6: Calling hotspots 2025-01-31 10:18:35,429 DEBUG chr10: Calling hotspots 2025-01-31 10:18:35,596 DEBUG chr7: Calling hotspots 2025-01-31 10:18:35,930 DEBUG chr2: 6232 hotspots called 2025-01-31 10:18:36,649 DEBUG chr8: Calling hotspots 2025-01-31 10:18:37,786 DEBUG chr1: 5374 hotspots called 2025-01-31 10:18:38,833 DEBUG chr14: Calling hotspots 2025-01-31 10:18:40,218 DEBUG chr9: Calling hotspots 2025-01-31 10:18:44,175 DEBUG chr10: 3740 hotspots called 2025-01-31 10:18:44,791 DEBUG chr6: 4060 hotspots called 2025-01-31 10:18:44,856 DEBUG chr8: 3627 hotspots called 2025-01-31 10:18:44,956 DEBUG chr7: 4886 hotspots called 2025-01-31 10:18:46,160 DEBUG chr14: 2624 hotspots called 2025-01-31 10:18:46,772 DEBUG chr11: Calling hotspots 2025-01-31 10:18:46,792 DEBUG chr9: 4276 hotspots called 2025-01-31 10:18:47,512 DEBUG chr15: Calling hotspots 2025-01-31 10:18:47,569 DEBUG chr12: Calling hotspots 2025-01-31 10:18:47,608 DEBUG chr13: Calling hotspots 2025-01-31 10:18:48,294 DEBUG chr16: Calling hotspots 2025-01-31 10:18:48,849 DEBUG chr17: Calling hotspots 2025-01-31 10:18:52,596 DEBUG chr11: 5573 hotspots called 2025-01-31 10:18:52,635 DEBUG chr15: 3355 hotspots called 2025-01-31 10:18:53,150 DEBUG chr17: 3439 hotspots called 2025-01-31 10:18:53,172 DEBUG chr12: 2939 hotspots called 2025-01-31 10:18:53,325 DEBUG chr16: 2610 hotspots called 2025-01-31 10:18:53,339 DEBUG chr13: 3700 hotspots called 2025-01-31 10:18:53,711 DEBUG chr19: Calling hotspots 2025-01-31 10:18:54,093 DEBUG chr18: Calling hotspots 2025-01-31 10:18:56,626 DEBUG chr19: 2490 hotspots called 2025-01-31 10:18:58,544 DEBUG chr18: 2130 hotspots called 2025-01-31 10:18:59,275 DEBUG Results of call_hotspots emitted. 2025-01-31 10:18:59,316 INFO There are 77051 hotspots called at FDR=0.05 2025-01-31 10:19:03,277 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:19:03,278 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:19:14,326 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:19:15,213 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:19:15,340 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:19:15,472 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:19:15,561 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:19:17,310 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:19:31,239 DEBUG chrX: 2619 peaks called 2025-01-31 10:19:32,675 DEBUG chr5: 5904 peaks called 2025-01-31 10:19:33,947 DEBUG chr3: 4731 peaks called 2025-01-31 10:19:34,829 DEBUG chr4: 6117 peaks called 2025-01-31 10:19:36,263 DEBUG chr2: 7610 peaks called 2025-01-31 10:19:39,687 DEBUG chr1: 6369 peaks called 2025-01-31 10:19:40,658 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:19:41,880 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:19:42,180 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:19:42,316 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:19:43,800 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:19:46,850 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:19:50,598 DEBUG chr6: 4819 peaks called 2025-01-31 10:19:52,761 DEBUG chr10: 4599 peaks called 2025-01-31 10:19:52,870 DEBUG chr8: 4524 peaks called 2025-01-31 10:19:55,527 DEBUG chr7: 6173 peaks called 2025-01-31 10:19:56,216 DEBUG chr14: 3098 peaks called 2025-01-31 10:19:58,640 DEBUG chr9: 5229 peaks called 2025-01-31 10:19:58,691 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:20:00,789 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:20:00,986 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:20:01,707 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:20:01,947 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:20:03,410 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:20:06,473 DEBUG chr11: 7161 peaks called 2025-01-31 10:20:06,621 DEBUG chr16: 3146 peaks called 2025-01-31 10:20:06,914 DEBUG chr15: 4115 peaks called 2025-01-31 10:20:07,029 DEBUG chr13: 4540 peaks called 2025-01-31 10:20:07,093 DEBUG chr12: 3550 peaks called 2025-01-31 10:20:07,184 DEBUG chr17: 4297 peaks called 2025-01-31 10:20:10,720 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:20:10,912 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:20:13,844 DEBUG chr19: 3180 peaks called 2025-01-31 10:20:14,512 DEBUG chr18: 2519 peaks called 2025-01-31 10:20:15,265 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:20:15,303 INFO There are 94300 peaks called at FDR=0.05 2025-01-31 10:20:17,111 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:20:17,112 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:20:20,873 DEBUG chr5: Calling hotspots 2025-01-31 10:20:21,005 DEBUG chr3: Calling hotspots 2025-01-31 10:20:21,141 DEBUG chr4: Calling hotspots 2025-01-31 10:20:21,267 DEBUG chrX: Calling hotspots 2025-01-31 10:20:21,570 DEBUG chr2: Calling hotspots 2025-01-31 10:20:21,598 DEBUG chr1: Calling hotspots 2025-01-31 10:20:26,842 DEBUG chr5: 3788 hotspots called 2025-01-31 10:20:27,138 DEBUG chr4: 3957 hotspots called 2025-01-31 10:20:27,219 DEBUG chr3: 2950 hotspots called 2025-01-31 10:20:27,455 DEBUG chrX: 1620 hotspots called 2025-01-31 10:20:28,176 DEBUG chr2: 4878 hotspots called 2025-01-31 10:20:28,394 DEBUG chr1: 3975 hotspots called 2025-01-31 10:20:29,702 DEBUG chr6: Calling hotspots 2025-01-31 10:20:29,922 DEBUG chr10: Calling hotspots 2025-01-31 10:20:30,170 DEBUG chr8: Calling hotspots 2025-01-31 10:20:30,253 DEBUG chr7: Calling hotspots 2025-01-31 10:20:30,659 DEBUG chr14: Calling hotspots 2025-01-31 10:20:31,069 DEBUG chr9: Calling hotspots 2025-01-31 10:20:34,947 DEBUG chr10: 2918 hotspots called 2025-01-31 10:20:35,589 DEBUG chr14: 1939 hotspots called 2025-01-31 10:20:35,619 DEBUG chr6: 3047 hotspots called 2025-01-31 10:20:35,854 DEBUG chr8: 2854 hotspots called 2025-01-31 10:20:35,864 DEBUG chr9: 3338 hotspots called 2025-01-31 10:20:35,983 DEBUG chr7: 3895 hotspots called 2025-01-31 10:20:37,321 DEBUG chr11: Calling hotspots 2025-01-31 10:20:37,729 DEBUG chr16: Calling hotspots 2025-01-31 10:20:37,778 DEBUG chr12: Calling hotspots 2025-01-31 10:20:37,791 DEBUG chr15: Calling hotspots 2025-01-31 10:20:37,934 DEBUG chr17: Calling hotspots 2025-01-31 10:20:37,946 DEBUG chr13: Calling hotspots 2025-01-31 10:20:40,459 DEBUG chr16: 1947 hotspots called 2025-01-31 10:20:40,804 DEBUG chr17: 2734 hotspots called 2025-01-31 10:20:40,861 DEBUG chr11: 4591 hotspots called 2025-01-31 10:20:41,243 DEBUG chr15: 2600 hotspots called 2025-01-31 10:20:41,299 DEBUG chr12: 2225 hotspots called 2025-01-31 10:20:41,430 DEBUG chr13: 2846 hotspots called 2025-01-31 10:20:41,663 DEBUG chr19: Calling hotspots 2025-01-31 10:20:41,703 DEBUG chr18: Calling hotspots 2025-01-31 10:20:43,028 DEBUG chr19: 1976 hotspots called 2025-01-31 10:20:43,610 DEBUG chr18: 1575 hotspots called 2025-01-31 10:20:43,835 DEBUG Results of call_hotspots emitted. 2025-01-31 10:20:43,869 INFO There are 59653 hotspots called at FDR=0.01 2025-01-31 10:20:46,608 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:20:46,609 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:20:54,663 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:20:55,031 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:20:55,349 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:20:56,065 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:20:56,809 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:20:57,494 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:21:02,530 DEBUG chr5: 4754 peaks called 2025-01-31 10:21:03,085 DEBUG chr4: 4907 peaks called 2025-01-31 10:21:04,134 DEBUG chr3: 3704 peaks called 2025-01-31 10:21:04,545 DEBUG chrX: 2001 peaks called 2025-01-31 10:21:05,787 DEBUG chr2: 6052 peaks called 2025-01-31 10:21:07,625 DEBUG chr1: 4895 peaks called 2025-01-31 10:21:09,725 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:21:10,399 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:21:10,858 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:21:11,204 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:21:12,154 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:21:13,415 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:21:17,746 DEBUG chr10: 3670 peaks called 2025-01-31 10:21:18,095 DEBUG chr6: 3775 peaks called 2025-01-31 10:21:18,203 DEBUG chr8: 3649 peaks called 2025-01-31 10:21:18,210 DEBUG chr7: 5014 peaks called 2025-01-31 10:21:18,963 DEBUG chr14: 2382 peaks called 2025-01-31 10:21:18,995 DEBUG chr9: 4183 peaks called 2025-01-31 10:21:23,433 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:21:23,565 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:21:23,933 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:21:24,118 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:21:24,367 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:21:24,561 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:21:28,285 DEBUG chr15: 3284 peaks called 2025-01-31 10:21:28,712 DEBUG chr11: 5968 peaks called 2025-01-31 10:21:28,802 DEBUG chr17: 3505 peaks called 2025-01-31 10:21:28,886 DEBUG chr16: 2450 peaks called 2025-01-31 10:21:29,217 DEBUG chr12: 2787 peaks called 2025-01-31 10:21:30,035 DEBUG chr13: 3623 peaks called 2025-01-31 10:21:30,815 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:21:31,231 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:21:32,486 DEBUG chr19: 2568 peaks called 2025-01-31 10:21:33,776 DEBUG chr18: 1931 peaks called 2025-01-31 10:21:34,372 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:21:34,402 INFO There are 75102 peaks called at FDR=0.01 2025-01-31 10:21:35,656 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:21:35,656 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:21:39,418 DEBUG chr3: Calling hotspots 2025-01-31 10:21:39,548 DEBUG chr4: Calling hotspots 2025-01-31 10:21:39,590 DEBUG chr5: Calling hotspots 2025-01-31 10:21:39,631 DEBUG chrX: Calling hotspots 2025-01-31 10:21:40,096 DEBUG chr2: Calling hotspots 2025-01-31 10:21:40,446 DEBUG chr1: Calling hotspots 2025-01-31 10:21:44,564 DEBUG chr4: 3264 hotspots called 2025-01-31 10:21:44,584 DEBUG chr3: 2453 hotspots called 2025-01-31 10:21:44,602 DEBUG chr5: 3109 hotspots called 2025-01-31 10:21:44,738 DEBUG chrX: 1342 hotspots called 2025-01-31 10:21:45,540 DEBUG chr2: 4007 hotspots called 2025-01-31 10:21:45,867 DEBUG chr1: 3198 hotspots called 2025-01-31 10:21:47,018 DEBUG chr10: Calling hotspots 2025-01-31 10:21:47,276 DEBUG chr8: Calling hotspots 2025-01-31 10:21:47,322 DEBUG chr7: Calling hotspots 2025-01-31 10:21:47,339 DEBUG chr6: Calling hotspots 2025-01-31 10:21:47,993 DEBUG chr14: Calling hotspots 2025-01-31 10:21:48,403 DEBUG chr9: Calling hotspots 2025-01-31 10:21:49,910 DEBUG chr10: 2397 hotspots called 2025-01-31 10:21:50,173 DEBUG chr8: 2383 hotspots called 2025-01-31 10:21:50,678 DEBUG chr7: 3296 hotspots called 2025-01-31 10:21:50,708 DEBUG chr6: 2457 hotspots called 2025-01-31 10:21:50,972 DEBUG chr14: 1564 hotspots called 2025-01-31 10:21:51,440 DEBUG chr9: 2762 hotspots called 2025-01-31 10:21:52,289 DEBUG chr11: Calling hotspots 2025-01-31 10:21:52,299 DEBUG chr13: Calling hotspots 2025-01-31 10:21:52,392 DEBUG chr15: Calling hotspots 2025-01-31 10:21:52,774 DEBUG chr16: Calling hotspots 2025-01-31 10:21:52,948 DEBUG chr12: Calling hotspots 2025-01-31 10:21:53,361 DEBUG chr17: Calling hotspots 2025-01-31 10:21:54,698 DEBUG chr15: 2167 hotspots called 2025-01-31 10:21:54,954 DEBUG chr16: 1576 hotspots called 2025-01-31 10:21:55,009 DEBUG chr13: 2330 hotspots called 2025-01-31 10:21:55,063 DEBUG chr11: 3906 hotspots called 2025-01-31 10:21:55,515 DEBUG chr17: 2285 hotspots called 2025-01-31 10:21:55,619 DEBUG chr12: 1822 hotspots called 2025-01-31 10:21:55,802 DEBUG chr19: Calling hotspots 2025-01-31 10:21:55,981 DEBUG chr18: Calling hotspots 2025-01-31 10:21:57,151 DEBUG chr19: 1656 hotspots called 2025-01-31 10:21:57,871 DEBUG chr18: 1277 hotspots called 2025-01-31 10:21:58,056 DEBUG Results of call_hotspots emitted. 2025-01-31 10:21:58,086 INFO There are 49251 hotspots called at FDR=0.001 2025-01-31 10:22:00,347 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:22:00,348 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:22:08,041 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:22:08,516 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:22:08,681 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:22:09,071 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:22:09,413 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:22:09,936 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:22:12,534 DEBUG chr5: 3927 peaks called 2025-01-31 10:22:12,927 DEBUG chr4: 4063 peaks called 2025-01-31 10:22:13,388 DEBUG chr3: 3056 peaks called 2025-01-31 10:22:13,994 DEBUG chrX: 1646 peaks called 2025-01-31 10:22:14,471 DEBUG chr2: 5001 peaks called 2025-01-31 10:22:16,217 DEBUG chr1: 3964 peaks called 2025-01-31 10:22:19,090 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:22:19,310 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:22:19,638 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:22:19,939 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:22:20,010 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:22:21,390 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:22:23,195 DEBUG chr6: 3043 peaks called 2025-01-31 10:22:23,311 DEBUG chr10: 3022 peaks called 2025-01-31 10:22:23,402 DEBUG chr14: 1951 peaks called 2025-01-31 10:22:23,676 DEBUG chr8: 3070 peaks called 2025-01-31 10:22:23,936 DEBUG chr7: 4252 peaks called 2025-01-31 10:22:25,955 DEBUG chr9: 3449 peaks called 2025-01-31 10:22:28,243 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:22:28,429 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:22:28,491 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:22:28,793 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:22:28,814 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:22:29,833 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:22:31,158 DEBUG chr15: 2738 peaks called 2025-01-31 10:22:31,316 DEBUG chr16: 1991 peaks called 2025-01-31 10:22:32,108 DEBUG chr11: 5107 peaks called 2025-01-31 10:22:32,182 DEBUG chr12: 2278 peaks called 2025-01-31 10:22:32,543 DEBUG chr13: 2953 peaks called 2025-01-31 10:22:32,590 DEBUG chr17: 2952 peaks called 2025-01-31 10:22:33,773 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:22:33,984 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:22:35,355 DEBUG chr19: 2152 peaks called 2025-01-31 10:22:36,352 DEBUG chr18: 1561 peaks called 2025-01-31 10:22:36,672 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:22:36,703 INFO There are 62176 peaks called at FDR=0.001 2025-01-31 10:22:37,730 INFO Saving density 2025-01-31 10:22:37,730 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:22:51,129 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:22:56,372 DEBUG Converting density to bigwig 2025-01-31 10:24:04,265 INFO Program finished