2025-01-31 09:31:52,964 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:52,967 INFO Extracting cutcounts from bam file 2025-01-31 09:33:49,775 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:50,029 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:50,033 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:50,034 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:50,035 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:50,036 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:50,046 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:52,376 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:33:52,400 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:33:52,533 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:33:52,548 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:33:52,601 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:33:52,723 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:33:53,526 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:33:53,629 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:33:53,681 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:33:53,793 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:33:53,814 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:33:53,960 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:33:56,087 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:33:56,127 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:33:56,193 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:33:56,892 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:33:56,893 INFO Total cutcounts = 18527716 2025-01-31 09:33:56,898 INFO Smoothing signal using MODWT 2025-01-31 09:33:56,900 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:33:56,951 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:56,954 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:56,954 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:56,955 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:56,955 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:56,972 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:37,680 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:39,184 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:44,139 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:46,562 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:11,274 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:27,531 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:39,423 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:43,678 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:48,559 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:49,410 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:54,803 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:24,337 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:16,939 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:27,481 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:30,838 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:51,354 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:41:51,354 INFO Estimating parameters of background model 2025-01-31 09:41:51,355 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:41:57,835 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:41:57,971 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:41:58,324 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:41:58,598 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:41:58,960 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:41:59,366 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:42:19,932 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:42:19,934 DEBUG chr4: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:42:20,173 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:42:20,175 DEBUG chr5: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:42:20,392 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:42:20,395 DEBUG chr3: Signal quantile: 0.995. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:42:21,714 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:42:21,716 DEBUG chrX: Signal quantile: 0.994. signal threshold: 9. Best RMSEA: 0.031 2025-01-31 09:42:23,780 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:42:23,840 DEBUG chr2: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.016 2025-01-31 09:42:23,958 DEBUG chr4 total SNP count: 261232 2025-01-31 09:42:23,958 DEBUG chr4 length: 156508116 2025-01-31 09:42:23,958 DEBUG ----------------------------------------- 2025-01-31 09:42:23,958 INFO Processing SNPs in chr4 2025-01-31 09:42:24,249 DEBUG chr5 total SNP count: 257750 2025-01-31 09:42:24,249 DEBUG chr5 length: 151834684 2025-01-31 09:42:24,249 DEBUG ----------------------------------------- 2025-01-31 09:42:24,249 INFO Processing SNPs in chr5 2025-01-31 09:42:24,368 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 65905), (65905, 261232)] 2025-01-31 09:42:24,497 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:24,505 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 257750)] 2025-01-31 09:42:24,683 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:24,831 DEBUG chr3 total SNP count: 270131 2025-01-31 09:42:24,831 DEBUG chr3 length: 160039680 2025-01-31 09:42:24,831 DEBUG ----------------------------------------- 2025-01-31 09:42:24,831 INFO Processing SNPs in chr3 2025-01-31 09:42:25,100 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 270131)] 2025-01-31 09:42:25,287 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:25,567 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:25,569 DEBUG chr1: Signal quantile: 0.995. signal threshold: 15. Best RMSEA: 0.015 2025-01-31 09:42:25,755 DEBUG chrX total SNP count: 247794 2025-01-31 09:42:25,756 DEBUG chrX length: 171031299 2025-01-31 09:42:25,756 DEBUG ----------------------------------------- 2025-01-31 09:42:25,756 INFO Processing SNPs in chrX 2025-01-31 09:42:26,138 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32940), (32940, 32943), (32943, 32995), (32995, 176477), (176477, 176480), (176480, 247794)] 2025-01-31 09:42:26,252 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:27,378 DEBUG chr2 total SNP count: 315748 2025-01-31 09:42:27,378 DEBUG chr2 length: 182113224 2025-01-31 09:42:27,378 DEBUG ----------------------------------------- 2025-01-31 09:42:27,378 INFO Processing SNPs in chr2 2025-01-31 09:42:27,866 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 307871), (307871, 315748)] 2025-01-31 09:42:28,080 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:28,930 DEBUG chr1 total SNP count: 341226 2025-01-31 09:42:28,930 DEBUG chr1 length: 195471971 2025-01-31 09:42:28,930 DEBUG ----------------------------------------- 2025-01-31 09:42:28,930 INFO Processing SNPs in chr1 2025-01-31 09:42:29,270 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 341226)] 2025-01-31 09:42:29,500 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:30,165 DEBUG Segmenting atomic regions: 2025-01-31 09:42:30,272 DEBUG Processing 1/108 atomic regions from SNP 0 to 603 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:30,998 DEBUG Processing 2/108 atomic regions from SNP 303 to 906 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:31,210 DEBUG Processing 3/108 atomic regions from SNP 606 to 1209 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:31,424 DEBUG Processing 4/108 atomic regions from SNP 909 to 1512 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:31,639 DEBUG Processing 5/108 atomic regions from SNP 1212 to 1815 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:31,860 DEBUG Processing 6/108 atomic regions from SNP 1515 to 2118 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:32,078 DEBUG Processing 7/108 atomic regions from SNP 1818 to 2421 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:32,298 DEBUG Processing 8/108 atomic regions from SNP 2121 to 2724 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:32,323 DEBUG Segmenting atomic regions: 2025-01-31 09:42:32,436 DEBUG Processing 1/218 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,513 DEBUG Processing 9/108 atomic regions from SNP 2424 to 3027 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:32,728 DEBUG Processing 10/108 atomic regions from SNP 2727 to 3330 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:32,943 DEBUG Processing 11/108 atomic regions from SNP 3030 to 3633 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:33,150 DEBUG Processing 2/218 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,165 DEBUG Processing 12/108 atomic regions from SNP 3333 to 3936 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:33,380 DEBUG Processing 3/218 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,389 DEBUG Processing 13/108 atomic regions from SNP 3636 to 4239 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:33,608 DEBUG Processing 4/218 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,632 DEBUG Processing 14/108 atomic regions from SNP 3939 to 4542 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:33,831 DEBUG Processing 5/218 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,886 DEBUG Processing 15/108 atomic regions from SNP 4242 to 4845 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:34,051 DEBUG Processing 6/218 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,142 DEBUG Processing 16/108 atomic regions from SNP 4545 to 5148 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:34,272 DEBUG Processing 7/218 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,395 DEBUG Processing 17/108 atomic regions from SNP 4848 to 5451 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:34,495 DEBUG Processing 8/218 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,646 DEBUG Processing 18/108 atomic regions from SNP 5151 to 5754 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:34,719 DEBUG Processing 9/218 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,874 DEBUG Processing 19/108 atomic regions from SNP 5454 to 6057 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:34,944 DEBUG Processing 10/218 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,096 DEBUG Processing 20/108 atomic regions from SNP 5757 to 6360 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:35,168 DEBUG Processing 11/218 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,318 DEBUG Processing 21/108 atomic regions from SNP 6060 to 6663 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:35,390 DEBUG Processing 12/218 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,541 DEBUG Processing 22/108 atomic regions from SNP 6363 to 6966 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:35,618 DEBUG Processing 13/218 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,768 DEBUG Processing 23/108 atomic regions from SNP 6666 to 7269 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:35,845 DEBUG Processing 14/218 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,987 DEBUG Processing 24/108 atomic regions from SNP 6969 to 7571 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:36,070 DEBUG Processing 15/218 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,197 DEBUG Processing 25/108 atomic regions from SNP 7271 to 7873 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:36,295 DEBUG Processing 16/218 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,407 DEBUG Processing 26/108 atomic regions from SNP 7573 to 8175 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:36,516 DEBUG Processing 17/218 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,622 DEBUG Processing 27/108 atomic regions from SNP 7875 to 8477 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:36,738 DEBUG Processing 18/218 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,839 DEBUG Processing 28/108 atomic regions from SNP 8177 to 8779 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:36,956 DEBUG Processing 19/218 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,064 DEBUG Processing 29/108 atomic regions from SNP 8479 to 9081 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:37,179 DEBUG Processing 20/218 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,288 DEBUG Processing 30/108 atomic regions from SNP 8781 to 9383 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:37,397 DEBUG Processing 21/218 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,509 DEBUG Processing 31/108 atomic regions from SNP 9083 to 9685 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:37,621 DEBUG Processing 22/218 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,724 DEBUG Processing 32/108 atomic regions from SNP 9385 to 9987 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:37,843 DEBUG Processing 23/218 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,938 DEBUG Processing 33/108 atomic regions from SNP 9687 to 10289 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:38,069 DEBUG Processing 24/218 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,157 DEBUG Processing 34/108 atomic regions from SNP 9989 to 10591 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:38,297 DEBUG Processing 25/218 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,380 DEBUG Processing 35/108 atomic regions from SNP 10291 to 10893 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:38,519 DEBUG Processing 26/218 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,609 DEBUG Processing 36/108 atomic regions from SNP 10593 to 11195 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:38,740 DEBUG Processing 27/218 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,844 DEBUG Processing 37/108 atomic regions from SNP 10895 to 11497 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:38,960 DEBUG Processing 28/218 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,085 DEBUG Processing 38/108 atomic regions from SNP 11197 to 11799 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:39,181 DEBUG Processing 29/218 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,337 DEBUG Processing 39/108 atomic regions from SNP 11499 to 12101 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:39,401 DEBUG Processing 30/218 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,580 DEBUG Processing 40/108 atomic regions from SNP 11801 to 12403 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:39,639 DEBUG Processing 31/218 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,814 DEBUG Processing 41/108 atomic regions from SNP 12103 to 12705 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:39,879 DEBUG Processing 32/218 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,054 DEBUG Processing 42/108 atomic regions from SNP 12405 to 13007 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:40,106 DEBUG Processing 33/218 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,287 DEBUG Processing 43/108 atomic regions from SNP 12707 to 13309 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:40,336 DEBUG Processing 34/218 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,526 DEBUG Processing 44/108 atomic regions from SNP 13009 to 13611 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:40,566 DEBUG Processing 35/218 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,760 DEBUG Processing 45/108 atomic regions from SNP 13311 to 13913 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:40,795 DEBUG Processing 36/218 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,004 DEBUG Processing 46/108 atomic regions from SNP 13613 to 14215 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:41,024 DEBUG Processing 37/218 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,239 DEBUG Processing 47/108 atomic regions from SNP 13915 to 14517 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:41,256 DEBUG Processing 38/218 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,458 DEBUG Processing 48/108 atomic regions from SNP 14217 to 14819 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:41,480 DEBUG Processing 39/218 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,670 DEBUG Processing 49/108 atomic regions from SNP 14519 to 15121 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:41,704 DEBUG Processing 40/218 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,884 DEBUG Processing 50/108 atomic regions from SNP 14821 to 15423 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:41,924 DEBUG Processing 41/218 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,100 DEBUG Processing 51/108 atomic regions from SNP 15123 to 15725 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:42,151 DEBUG Processing 42/218 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,316 DEBUG Processing 52/108 atomic regions from SNP 15425 to 16027 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:42,378 DEBUG Processing 43/218 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,532 DEBUG Processing 53/108 atomic regions from SNP 15727 to 16329 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:42,608 DEBUG Processing 44/218 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,746 DEBUG Processing 54/108 atomic regions from SNP 16029 to 16631 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:42,858 DEBUG Processing 45/218 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,955 DEBUG Processing 55/108 atomic regions from SNP 16331 to 16933 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:43,096 DEBUG Processing 46/218 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,169 DEBUG Processing 56/108 atomic regions from SNP 16633 to 17235 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:43,326 DEBUG Processing 47/218 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,386 DEBUG Processing 57/108 atomic regions from SNP 16935 to 17537 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:43,550 DEBUG Processing 48/218 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,605 DEBUG Processing 58/108 atomic regions from SNP 17237 to 17839 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:43,773 DEBUG Processing 49/218 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,823 DEBUG Processing 59/108 atomic regions from SNP 17539 to 18141 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:43,994 DEBUG Processing 50/218 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,043 DEBUG Processing 60/108 atomic regions from SNP 17841 to 18443 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:44,219 DEBUG Processing 51/218 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,263 DEBUG Processing 61/108 atomic regions from SNP 18143 to 18745 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:44,442 DEBUG Processing 52/218 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,483 DEBUG Processing 62/108 atomic regions from SNP 18445 to 19047 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:44,665 DEBUG Processing 53/218 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,703 DEBUG Processing 63/108 atomic regions from SNP 18747 to 19349 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:44,887 DEBUG Processing 54/218 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,923 DEBUG Processing 64/108 atomic regions from SNP 19049 to 19651 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:45,105 DEBUG Processing 55/218 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,142 DEBUG Processing 65/108 atomic regions from SNP 19351 to 19953 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:45,326 DEBUG Processing 56/218 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,357 DEBUG Processing 66/108 atomic regions from SNP 19653 to 20255 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:45,566 DEBUG Processing 57/218 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,575 DEBUG Processing 67/108 atomic regions from SNP 19955 to 20557 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:45,788 DEBUG Processing 58/218 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,793 DEBUG Processing 68/108 atomic regions from SNP 20257 to 20859 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:46,008 DEBUG Processing 59/218 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,011 DEBUG Processing 69/108 atomic regions from SNP 20559 to 21161 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:46,231 DEBUG Processing 70/108 atomic regions from SNP 20861 to 21463 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:46,238 DEBUG Processing 60/218 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,450 DEBUG Processing 71/108 atomic regions from SNP 21163 to 21765 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:46,472 DEBUG Processing 61/218 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,664 DEBUG Processing 72/108 atomic regions from SNP 21465 to 22067 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:46,711 DEBUG Processing 62/218 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,881 DEBUG Processing 73/108 atomic regions from SNP 21767 to 22369 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:46,931 DEBUG Processing 63/218 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,100 DEBUG Processing 74/108 atomic regions from SNP 22069 to 22671 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:47,152 DEBUG Processing 64/218 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,318 DEBUG Processing 75/108 atomic regions from SNP 22371 to 22973 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:47,377 DEBUG Processing 65/218 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,538 DEBUG Processing 76/108 atomic regions from SNP 22673 to 23275 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:47,614 DEBUG Processing 66/218 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,761 DEBUG Processing 77/108 atomic regions from SNP 22975 to 23577 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:47,850 DEBUG Processing 67/218 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,986 DEBUG Processing 78/108 atomic regions from SNP 23277 to 23879 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:48,083 DEBUG Processing 68/218 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,215 DEBUG Processing 79/108 atomic regions from SNP 23579 to 24181 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:48,349 DEBUG Processing 69/218 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,441 DEBUG Processing 80/108 atomic regions from SNP 23881 to 24483 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:48,643 DEBUG Processing 70/218 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,695 DEBUG Processing 81/108 atomic regions from SNP 24183 to 24785 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:49,058 DEBUG Processing 71/218 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,083 DEBUG Processing 82/108 atomic regions from SNP 24485 to 25087 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:49,366 DEBUG Processing 72/218 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,399 DEBUG Processing 83/108 atomic regions from SNP 24787 to 25389 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:49,640 DEBUG Processing 73/218 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,656 DEBUG Processing 84/108 atomic regions from SNP 25089 to 25691 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:49,973 DEBUG Processing 74/218 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,978 DEBUG Processing 85/108 atomic regions from SNP 25391 to 25993 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:50,225 DEBUG Processing 75/218 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,229 DEBUG Processing 86/108 atomic regions from SNP 25693 to 26295 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:50,468 DEBUG Processing 76/218 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,481 DEBUG Processing 87/108 atomic regions from SNP 25995 to 26597 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:50,790 DEBUG Processing 77/218 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,812 DEBUG Processing 88/108 atomic regions from SNP 26297 to 26899 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,045 DEBUG Processing 78/218 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,053 DEBUG Processing 89/108 atomic regions from SNP 26599 to 27201 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,275 DEBUG Processing 90/108 atomic regions from SNP 26901 to 27503 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,280 DEBUG Processing 79/218 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,491 DEBUG Processing 91/108 atomic regions from SNP 27203 to 27805 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,510 DEBUG Processing 80/218 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,715 DEBUG Processing 92/108 atomic regions from SNP 27505 to 28107 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,744 DEBUG Processing 81/218 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,008 DEBUG Processing 93/108 atomic regions from SNP 27807 to 28409 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,039 DEBUG Processing 82/218 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,271 DEBUG Processing 94/108 atomic regions from SNP 28109 to 28711 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,314 DEBUG Processing 83/218 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,540 DEBUG Processing 95/108 atomic regions from SNP 28411 to 29013 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,589 DEBUG Processing 84/218 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,849 DEBUG Processing 96/108 atomic regions from SNP 28713 to 29315 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,950 DEBUG Processing 85/218 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,094 DEBUG Processing 97/108 atomic regions from SNP 29015 to 29617 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,287 DEBUG Processing 86/218 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,482 DEBUG Processing 98/108 atomic regions from SNP 29317 to 29919 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,617 DEBUG Processing 87/218 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,908 DEBUG Processing 99/108 atomic regions from SNP 29619 to 30221 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,020 DEBUG Processing 88/218 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,333 DEBUG Processing 100/108 atomic regions from SNP 29921 to 30523 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,397 DEBUG Processing 89/218 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,732 DEBUG Processing 101/108 atomic regions from SNP 30223 to 30825 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,823 DEBUG Processing 90/218 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,123 DEBUG Processing 102/108 atomic regions from SNP 30525 to 31127 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,220 DEBUG Processing 91/218 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,347 DEBUG Processing 103/108 atomic regions from SNP 30827 to 31429 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,542 DEBUG Segmenting atomic regions: 2025-01-31 09:42:55,658 DEBUG Processing 1/858 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,678 DEBUG Processing 92/218 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,690 DEBUG Processing 104/108 atomic regions from SNP 31129 to 31731 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,104 DEBUG Processing 93/218 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,116 DEBUG Processing 105/108 atomic regions from SNP 31431 to 32033 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,506 DEBUG Processing 94/218 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,512 DEBUG Processing 106/108 atomic regions from SNP 31733 to 32335 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,670 DEBUG Processing 2/858 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,880 DEBUG Processing 95/218 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,883 DEBUG Processing 107/108 atomic regions from SNP 32035 to 32637 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,024 DEBUG Processing 3/858 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,215 DEBUG Processing 108/108 atomic regions from SNP 32337 to 32939 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,227 DEBUG Processing 96/218 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,403 DEBUG Processing 4/858 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,467 DEBUG Unique SNPs positions in subchromosome 1: 32940 2025-01-31 09:42:57,541 DEBUG Subchromosome time: 31.289311926811934, subchromosome SNPs: 32940 2025-01-31 09:42:57,578 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:57,592 DEBUG Processing 97/218 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,662 DEBUG Segmenting atomic regions: 2025-01-31 09:42:57,775 DEBUG Processing 5/858 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,784 DEBUG Processing 1/899 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,957 DEBUG Processing 98/218 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,158 DEBUG Processing 6/858 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,299 DEBUG Processing 99/218 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,516 DEBUG Processing 7/858 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,674 DEBUG Processing 2/899 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,679 DEBUG Processing 100/218 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,840 DEBUG Processing 8/858 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,077 DEBUG Processing 101/218 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,081 DEBUG Processing 3/899 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,130 DEBUG Processing 9/858 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,412 DEBUG Processing 102/218 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,437 DEBUG Processing 4/899 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,497 DEBUG Processing 10/858 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,648 DEBUG Processing 103/218 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,735 DEBUG Processing 5/899 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,891 DEBUG Processing 11/858 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,950 DEBUG Processing 104/218 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,001 DEBUG Processing 6/899 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,243 DEBUG Processing 12/858 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,335 DEBUG Processing 105/218 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,346 DEBUG Processing 7/899 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,570 DEBUG Processing 13/858 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,738 DEBUG Processing 106/218 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,751 DEBUG Processing 8/899 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,887 DEBUG Processing 14/858 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,121 DEBUG Processing 107/218 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,175 DEBUG Processing 9/899 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,235 DEBUG Processing 15/858 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,489 DEBUG Processing 108/218 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,589 DEBUG Processing 10/899 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,637 DEBUG Processing 16/858 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,857 DEBUG Processing 109/218 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,993 DEBUG Processing 11/899 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,044 DEBUG Processing 17/858 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,244 DEBUG Processing 110/218 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,387 DEBUG Processing 12/899 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,446 DEBUG Processing 18/858 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,628 DEBUG Processing 111/218 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,782 DEBUG Processing 13/899 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,836 DEBUG Processing 19/858 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,025 DEBUG Processing 112/218 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,186 DEBUG Processing 14/899 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,230 DEBUG Processing 20/858 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,446 DEBUG Processing 113/218 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,582 DEBUG Processing 15/899 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,622 DEBUG Processing 21/858 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,854 DEBUG Processing 114/218 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,969 DEBUG Processing 16/899 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,998 DEBUG Processing 22/858 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,266 DEBUG Processing 115/218 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,373 DEBUG Processing 17/899 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,382 DEBUG Processing 23/858 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,669 DEBUG Processing 116/218 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,766 DEBUG Processing 18/899 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,781 DEBUG Processing 24/858 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,070 DEBUG Processing 117/218 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,070 DEBUG Segmenting atomic regions: 2025-01-31 09:43:05,171 DEBUG Processing 19/899 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,172 DEBUG Processing 25/858 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,212 DEBUG Processing 1/1025 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,460 DEBUG Processing 118/218 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,602 DEBUG Processing 20/899 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,605 DEBUG Processing 26/858 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,784 DEBUG Processing 119/218 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,005 DEBUG Processing 21/899 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,007 DEBUG Processing 27/858 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,114 DEBUG Processing 2/1025 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,133 DEBUG Processing 120/218 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,390 DEBUG Processing 22/899 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,396 DEBUG Processing 28/858 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,517 DEBUG Processing 121/218 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,517 DEBUG Processing 3/1025 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,762 DEBUG Processing 23/899 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,778 DEBUG Processing 29/858 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,927 DEBUG Processing 122/218 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,938 DEBUG Processing 4/1025 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,159 DEBUG Processing 24/899 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,191 DEBUG Processing 30/858 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,344 DEBUG Processing 123/218 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,347 DEBUG Processing 5/1025 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,550 DEBUG Processing 25/899 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,585 DEBUG Processing 31/858 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,734 DEBUG Processing 124/218 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,740 DEBUG Processing 6/1025 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,912 DEBUG Processing 26/899 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,961 DEBUG Processing 32/858 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,113 DEBUG Processing 7/1025 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,121 DEBUG Processing 125/218 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,271 DEBUG Processing 27/899 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,319 DEBUG Processing 33/858 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,496 DEBUG Processing 126/218 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,498 DEBUG Processing 8/1025 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,663 DEBUG Processing 28/899 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,695 DEBUG Processing 34/858 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,880 DEBUG Processing 127/218 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,891 DEBUG Processing 9/1025 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,067 DEBUG Processing 29/899 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,090 DEBUG Processing 35/858 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,279 DEBUG Processing 128/218 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,298 DEBUG Processing 10/1025 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,445 DEBUG Processing 30/899 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,490 DEBUG Processing 36/858 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,618 DEBUG Processing 129/218 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,651 DEBUG Processing 11/1025 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,727 DEBUG Processing 31/899 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,797 DEBUG Processing 37/858 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,969 DEBUG Processing 130/218 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,014 DEBUG Processing 12/1025 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,041 DEBUG Processing 32/899 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,091 DEBUG Processing 38/858 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,341 DEBUG Processing 131/218 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,412 DEBUG Processing 13/1025 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,419 DEBUG Processing 33/899 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,441 DEBUG Processing 39/858 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,463 DEBUG Segmenting atomic regions: 2025-01-31 09:43:10,615 DEBUG Processing 1/1136 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,689 DEBUG Processing 132/218 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,790 DEBUG Processing 14/1025 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,817 DEBUG Processing 40/858 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,819 DEBUG Processing 34/899 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,939 DEBUG Processing 133/218 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,057 DEBUG Processing 15/1025 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,070 DEBUG Processing 41/858 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,076 DEBUG Processing 35/899 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,177 DEBUG Processing 134/218 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,309 DEBUG Processing 42/858 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,320 DEBUG Processing 36/899 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,321 DEBUG Processing 16/1025 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,430 DEBUG Processing 2/1136 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,446 DEBUG Processing 135/218 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,547 DEBUG Processing 43/858 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,566 DEBUG Processing 37/899 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,578 DEBUG Processing 17/1025 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,693 DEBUG Processing 136/218 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,720 DEBUG Processing 3/1136 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,803 DEBUG Processing 44/858 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,823 DEBUG Processing 38/899 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,857 DEBUG Processing 18/1025 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,925 DEBUG Processing 137/218 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,983 DEBUG Processing 4/1136 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,072 DEBUG Processing 45/858 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,089 DEBUG Processing 39/899 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,147 DEBUG Processing 19/1025 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,168 DEBUG Processing 138/218 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,250 DEBUG Processing 5/1136 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,338 DEBUG Processing 46/858 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,387 DEBUG Processing 40/899 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,440 DEBUG Processing 139/218 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,458 DEBUG Processing 20/1025 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,525 DEBUG Processing 6/1136 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,574 DEBUG Processing 47/858 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,686 DEBUG Processing 41/899 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,735 DEBUG Processing 140/218 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,799 DEBUG Processing 21/1025 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,845 DEBUG Processing 7/1136 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,861 DEBUG Processing 48/858 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,965 DEBUG Processing 42/899 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,032 DEBUG Processing 141/218 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,144 DEBUG Processing 22/1025 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,181 DEBUG Processing 49/858 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,215 DEBUG Processing 8/1136 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,249 DEBUG Processing 43/899 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,312 DEBUG Processing 142/218 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,479 DEBUG Processing 23/1025 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,507 DEBUG Processing 50/858 atomic regions from SNP 14749 to 15349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,573 DEBUG Processing 44/899 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,576 DEBUG Processing 9/1136 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,608 DEBUG Processing 143/218 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,851 DEBUG Processing 24/1025 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,866 DEBUG Processing 51/858 atomic regions from SNP 15049 to 15649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,960 DEBUG Processing 45/899 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,978 DEBUG Processing 144/218 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,991 DEBUG Processing 10/1136 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,208 DEBUG Processing 25/1025 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,232 DEBUG Processing 52/858 atomic regions from SNP 15349 to 15949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,328 DEBUG Processing 46/899 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,344 DEBUG Processing 145/218 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,372 DEBUG Processing 11/1136 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,551 DEBUG Processing 26/1025 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,594 DEBUG Processing 53/858 atomic regions from SNP 15649 to 16249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,704 DEBUG Processing 47/899 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,716 DEBUG Processing 146/218 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,781 DEBUG Processing 12/1136 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,832 DEBUG Segmenting atomic regions: 2025-01-31 09:43:14,888 DEBUG Processing 27/1025 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,934 DEBUG Processing 54/858 atomic regions from SNP 15949 to 16549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,940 DEBUG Processing 1/477 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:15,066 DEBUG Processing 48/899 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,069 DEBUG Processing 147/218 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,135 DEBUG Processing 13/1136 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,189 DEBUG Processing 28/1025 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,227 DEBUG Processing 2/477 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:15,230 DEBUG Processing 55/858 atomic regions from SNP 16249 to 16849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,406 DEBUG Processing 148/218 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,408 DEBUG Processing 49/899 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,502 DEBUG Processing 14/1136 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,510 DEBUG Processing 3/477 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:15,518 DEBUG Processing 29/1025 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,519 DEBUG Processing 56/858 atomic regions from SNP 16549 to 17149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,727 DEBUG Processing 149/218 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,738 DEBUG Processing 50/899 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,829 DEBUG Processing 4/477 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:15,850 DEBUG Processing 57/858 atomic regions from SNP 16849 to 17449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,867 DEBUG Processing 15/1136 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,876 DEBUG Processing 30/1025 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,022 DEBUG Processing 150/218 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,056 DEBUG Processing 51/899 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,119 DEBUG Processing 5/477 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:16,137 DEBUG Processing 58/858 atomic regions from SNP 17149 to 17749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,188 DEBUG Processing 16/1136 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,192 DEBUG Processing 31/1025 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,255 DEBUG Processing 151/218 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,307 DEBUG Processing 52/899 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,368 DEBUG Processing 6/477 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:16,423 DEBUG Processing 59/858 atomic regions from SNP 17449 to 18049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,506 DEBUG Processing 32/1025 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,512 DEBUG Processing 17/1136 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,530 DEBUG Processing 152/218 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,570 DEBUG Processing 53/899 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,602 DEBUG Processing 7/477 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:16,716 DEBUG Processing 60/858 atomic regions from SNP 17749 to 18349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,873 DEBUG Processing 33/1025 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,883 DEBUG Processing 153/218 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,888 DEBUG Processing 18/1136 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,909 DEBUG Processing 8/477 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:16,909 DEBUG Processing 54/899 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,994 DEBUG Processing 61/858 atomic regions from SNP 18049 to 18649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,252 DEBUG Processing 34/1025 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,268 DEBUG Processing 154/218 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,288 DEBUG Processing 19/1136 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,295 DEBUG Processing 9/477 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:17,312 DEBUG Processing 55/899 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,342 DEBUG Processing 62/858 atomic regions from SNP 18349 to 18949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,643 DEBUG Processing 35/1025 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,663 DEBUG Processing 155/218 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,726 DEBUG Processing 10/477 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:17,731 DEBUG Processing 20/1136 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,738 DEBUG Processing 56/899 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,760 DEBUG Processing 63/858 atomic regions from SNP 18649 to 19249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,006 DEBUG Processing 36/1025 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,013 DEBUG Processing 156/218 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,088 DEBUG Processing 11/477 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,128 DEBUG Processing 57/899 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,133 DEBUG Processing 64/858 atomic regions from SNP 18949 to 19549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,159 DEBUG Processing 21/1136 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,362 DEBUG Processing 37/1025 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,367 DEBUG Processing 157/218 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,455 DEBUG Processing 12/477 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,525 DEBUG Processing 65/858 atomic regions from SNP 19249 to 19849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,527 DEBUG Processing 58/899 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,583 DEBUG Processing 22/1136 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,740 DEBUG Processing 38/1025 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,749 DEBUG Processing 158/218 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,803 DEBUG Processing 13/477 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,892 DEBUG Processing 66/858 atomic regions from SNP 19549 to 20149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,907 DEBUG Processing 59/899 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,022 DEBUG Processing 23/1136 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,133 DEBUG Processing 39/1025 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,135 DEBUG Processing 159/218 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,194 DEBUG Processing 14/477 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:19,257 DEBUG Processing 67/858 atomic regions from SNP 19849 to 20449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,291 DEBUG Processing 60/899 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,429 DEBUG Processing 24/1136 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,535 DEBUG Processing 160/218 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,563 DEBUG Processing 40/1025 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,565 DEBUG Processing 15/477 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:19,628 DEBUG Processing 68/858 atomic regions from SNP 20149 to 20749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,636 DEBUG Processing 61/899 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,766 DEBUG Processing 25/1136 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,863 DEBUG Processing 161/218 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,863 DEBUG Processing 16/477 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:19,899 DEBUG Processing 41/1025 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,959 DEBUG Processing 69/858 atomic regions from SNP 20449 to 21049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,973 DEBUG Processing 62/899 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,134 DEBUG Processing 26/1136 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,205 DEBUG Processing 17/477 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:20,236 DEBUG Processing 162/218 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,265 DEBUG Processing 42/1025 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,324 DEBUG Processing 70/858 atomic regions from SNP 20749 to 21349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,359 DEBUG Processing 63/899 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,539 DEBUG Processing 27/1136 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,577 DEBUG Processing 18/477 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:20,636 DEBUG Processing 163/218 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,671 DEBUG Processing 43/1025 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,718 DEBUG Processing 71/858 atomic regions from SNP 21049 to 21649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,763 DEBUG Processing 64/899 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,998 DEBUG Processing 19/477 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:21,014 DEBUG Processing 28/1136 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,059 DEBUG Processing 164/218 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,121 DEBUG Processing 44/1025 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,151 DEBUG Processing 72/858 atomic regions from SNP 21349 to 21949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,211 DEBUG Processing 65/899 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,352 DEBUG Processing 20/477 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:21,429 DEBUG Processing 29/1136 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,438 DEBUG Processing 165/218 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,529 DEBUG Processing 45/1025 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,539 DEBUG Processing 73/858 atomic regions from SNP 21649 to 22249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,623 DEBUG Processing 66/899 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,699 DEBUG Processing 21/477 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:21,811 DEBUG Processing 30/1136 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,824 DEBUG Processing 166/218 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,924 DEBUG Processing 74/858 atomic regions from SNP 21949 to 22549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,933 DEBUG Processing 46/1025 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,018 DEBUG Processing 67/899 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,100 DEBUG Processing 22/477 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:22,224 DEBUG Processing 167/218 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,229 DEBUG Processing 31/1136 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,331 DEBUG Processing 75/858 atomic regions from SNP 22249 to 22849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,365 DEBUG Processing 47/1025 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,427 DEBUG Processing 68/899 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,513 DEBUG Processing 23/477 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:22,645 DEBUG Processing 168/218 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,679 DEBUG Processing 32/1136 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,723 DEBUG Processing 76/858 atomic regions from SNP 22549 to 23149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,800 DEBUG Processing 48/1025 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,843 DEBUG Processing 69/899 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,881 DEBUG Processing 24/477 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,110 DEBUG Processing 169/218 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,144 DEBUG Processing 77/858 atomic regions from SNP 22849 to 23449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,151 DEBUG Processing 33/1136 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,228 DEBUG Processing 49/1025 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,280 DEBUG Processing 70/899 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,302 DEBUG Processing 25/477 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,577 DEBUG Processing 170/218 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,590 DEBUG Processing 78/858 atomic regions from SNP 23149 to 23749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,649 DEBUG Processing 34/1136 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,697 DEBUG Processing 50/1025 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,708 DEBUG Processing 26/477 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,723 DEBUG Processing 71/899 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,027 DEBUG Processing 79/858 atomic regions from SNP 23449 to 24049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,038 DEBUG Processing 171/218 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,139 DEBUG Processing 35/1136 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,152 DEBUG Processing 27/477 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,170 DEBUG Processing 72/899 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,182 DEBUG Processing 51/1025 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,361 DEBUG Processing 80/858 atomic regions from SNP 23749 to 24349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,402 DEBUG Processing 172/218 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,560 DEBUG Processing 28/477 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,582 DEBUG Processing 73/899 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,600 DEBUG Processing 36/1136 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,621 DEBUG Processing 52/1025 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,661 DEBUG Processing 81/858 atomic regions from SNP 24049 to 24649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,703 DEBUG Processing 173/218 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,928 DEBUG Processing 29/477 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,985 DEBUG Processing 74/899 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,076 DEBUG Processing 53/1025 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,080 DEBUG Processing 82/858 atomic regions from SNP 24349 to 24949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,088 DEBUG Processing 37/1136 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,116 DEBUG Processing 174/218 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,221 DEBUG Processing 30/477 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:25,344 DEBUG Processing 75/899 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,521 DEBUG Processing 83/858 atomic regions from SNP 24649 to 25249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,534 DEBUG Processing 54/1025 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,544 DEBUG Processing 38/1136 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,588 DEBUG Processing 175/218 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,620 DEBUG Processing 31/477 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:25,720 DEBUG Processing 76/899 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,924 DEBUG Processing 84/858 atomic regions from SNP 24949 to 25549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,966 DEBUG Processing 55/1025 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,007 DEBUG Processing 39/1136 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,043 DEBUG Processing 176/218 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,082 DEBUG Processing 32/477 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,147 DEBUG Processing 77/899 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,327 DEBUG Processing 85/858 atomic regions from SNP 25249 to 25849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,394 DEBUG Processing 56/1025 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,449 DEBUG Processing 40/1136 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,460 DEBUG Processing 177/218 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,485 DEBUG Processing 33/477 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,550 DEBUG Processing 78/899 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,719 DEBUG Processing 86/858 atomic regions from SNP 25549 to 26149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,817 DEBUG Processing 57/1025 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,899 DEBUG Processing 178/218 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,915 DEBUG Processing 34/477 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,934 DEBUG Processing 41/1136 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,001 DEBUG Processing 79/899 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,109 DEBUG Processing 87/858 atomic regions from SNP 25849 to 26449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,226 DEBUG Processing 58/1025 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,281 DEBUG Processing 179/218 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,327 DEBUG Processing 35/477 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:27,376 DEBUG Processing 42/1136 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,437 DEBUG Processing 80/899 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,527 DEBUG Processing 88/858 atomic regions from SNP 26149 to 26749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,642 DEBUG Processing 59/1025 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,659 DEBUG Processing 180/218 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,703 DEBUG Processing 36/477 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:27,823 DEBUG Processing 43/1136 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,874 DEBUG Processing 81/899 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,917 DEBUG Processing 89/858 atomic regions from SNP 26449 to 27049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,028 DEBUG Processing 181/218 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,029 DEBUG Processing 37/477 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,044 DEBUG Processing 60/1025 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,192 DEBUG Processing 44/1136 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,274 DEBUG Processing 82/899 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,305 DEBUG Processing 90/858 atomic regions from SNP 26749 to 27349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,438 DEBUG Processing 38/477 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,438 DEBUG Processing 182/218 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,470 DEBUG Processing 61/1025 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,547 DEBUG Processing 45/1136 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,608 DEBUG Processing 83/899 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,635 DEBUG Processing 91/858 atomic regions from SNP 27049 to 27649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,853 DEBUG Processing 39/477 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,863 DEBUG Processing 183/218 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,952 DEBUG Processing 62/1025 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,980 DEBUG Processing 92/858 atomic regions from SNP 27349 to 27949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,981 DEBUG Processing 84/899 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,992 DEBUG Processing 46/1136 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,190 DEBUG Processing 40/477 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:29,257 DEBUG Processing 184/218 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,373 DEBUG Processing 63/1025 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,442 DEBUG Processing 85/899 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,445 DEBUG Processing 93/858 atomic regions from SNP 27649 to 28249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,472 DEBUG Processing 47/1136 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,542 DEBUG Processing 41/477 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:29,611 DEBUG Processing 185/218 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,735 DEBUG Processing 64/1025 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,863 DEBUG Processing 86/899 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,901 DEBUG Processing 94/858 atomic regions from SNP 27949 to 28549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,943 DEBUG Processing 48/1136 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,945 DEBUG Processing 42/477 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:29,999 DEBUG Processing 186/218 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,104 DEBUG Processing 65/1025 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,296 DEBUG Processing 87/899 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,339 DEBUG Processing 95/858 atomic regions from SNP 28249 to 28849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,381 DEBUG Processing 43/477 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:30,410 DEBUG Processing 49/1136 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,429 DEBUG Processing 187/218 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,513 DEBUG Processing 66/1025 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,741 DEBUG Processing 88/899 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,771 DEBUG Processing 96/858 atomic regions from SNP 28549 to 29149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,825 DEBUG Processing 44/477 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:30,893 DEBUG Processing 188/218 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,900 DEBUG Processing 50/1136 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,955 DEBUG Processing 67/1025 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,176 DEBUG Processing 89/899 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,198 DEBUG Processing 97/858 atomic regions from SNP 28849 to 29449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,255 DEBUG Processing 45/477 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:31,335 DEBUG Processing 189/218 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,388 DEBUG Processing 51/1136 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,446 DEBUG Processing 68/1025 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,563 DEBUG Processing 90/899 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,596 DEBUG Processing 98/858 atomic regions from SNP 29149 to 29749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,666 DEBUG Processing 46/477 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:31,751 DEBUG Processing 190/218 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,862 DEBUG Processing 52/1136 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,911 DEBUG Processing 69/1025 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,991 DEBUG Processing 91/899 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,017 DEBUG Processing 99/858 atomic regions from SNP 29449 to 30049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,086 DEBUG Processing 47/477 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,208 DEBUG Processing 191/218 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,336 DEBUG Processing 53/1136 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,386 DEBUG Processing 70/1025 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,445 DEBUG Processing 100/858 atomic regions from SNP 29749 to 30349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,449 DEBUG Processing 92/899 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,486 DEBUG Processing 48/477 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,576 DEBUG Processing 192/218 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,775 DEBUG Processing 54/1136 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,820 DEBUG Processing 71/1025 atomic regions from SNP 21070 to 21670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,842 DEBUG Processing 93/899 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,847 DEBUG Processing 101/858 atomic regions from SNP 30049 to 30649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,855 DEBUG Processing 49/477 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,919 DEBUG Processing 193/218 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,156 DEBUG Processing 55/1136 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,192 DEBUG Processing 72/1025 atomic regions from SNP 21370 to 21970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,202 DEBUG Processing 94/899 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,212 DEBUG Processing 102/858 atomic regions from SNP 30349 to 30949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,235 DEBUG Processing 50/477 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,268 DEBUG Processing 194/218 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,448 DEBUG Processing 56/1136 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,464 DEBUG Processing 73/1025 atomic regions from SNP 21670 to 22270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,482 DEBUG Processing 95/899 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,506 DEBUG Processing 103/858 atomic regions from SNP 30649 to 31249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,540 DEBUG Processing 51/477 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,613 DEBUG Processing 195/218 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,794 DEBUG Processing 104/858 atomic regions from SNP 30949 to 31549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,796 DEBUG Processing 96/899 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,798 DEBUG Processing 57/1136 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,800 DEBUG Processing 74/1025 atomic regions from SNP 21970 to 22570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,811 DEBUG Processing 52/477 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,918 DEBUG Processing 196/218 atomic regions from SNP 58695 to 59296 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,213 DEBUG Processing 105/858 atomic regions from SNP 31249 to 31849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,215 DEBUG Processing 53/477 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,230 DEBUG Processing 97/899 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,230 DEBUG Processing 75/1025 atomic regions from SNP 22270 to 22870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,241 DEBUG Processing 58/1136 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,275 DEBUG Processing 197/218 atomic regions from SNP 58996 to 59597 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,662 DEBUG Processing 54/477 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,664 DEBUG Processing 106/858 atomic regions from SNP 31549 to 32149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,700 DEBUG Processing 98/899 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,728 DEBUG Processing 76/1025 atomic regions from SNP 22570 to 23170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,737 DEBUG Processing 198/218 atomic regions from SNP 59297 to 59898 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,743 DEBUG Processing 59/1136 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,046 DEBUG Processing 55/477 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,056 DEBUG Processing 107/858 atomic regions from SNP 31849 to 32449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,115 DEBUG Processing 99/899 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,181 DEBUG Processing 199/218 atomic regions from SNP 59598 to 60199 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,185 DEBUG Processing 77/1025 atomic regions from SNP 22870 to 23470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,210 DEBUG Processing 60/1136 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,271 DEBUG Processing 56/477 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,323 DEBUG Processing 108/858 atomic regions from SNP 32149 to 32749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,375 DEBUG Processing 100/899 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,616 DEBUG Processing 200/218 atomic regions from SNP 59899 to 60500 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,620 DEBUG Processing 78/1025 atomic regions from SNP 23170 to 23770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,637 DEBUG Processing 57/477 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,653 DEBUG Processing 109/858 atomic regions from SNP 32449 to 33049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,656 DEBUG Processing 61/1136 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,689 DEBUG Processing 101/899 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,060 DEBUG Processing 201/218 atomic regions from SNP 60200 to 60801 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,069 DEBUG Processing 79/1025 atomic regions from SNP 23470 to 24070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,096 DEBUG Processing 58/477 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,125 DEBUG Processing 110/858 atomic regions from SNP 32749 to 33349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,133 DEBUG Processing 62/1136 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,137 DEBUG Processing 102/899 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,474 DEBUG Processing 202/218 atomic regions from SNP 60501 to 61102 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,536 DEBUG Processing 59/477 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,538 DEBUG Processing 80/1025 atomic regions from SNP 23770 to 24370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,572 DEBUG Processing 111/858 atomic regions from SNP 33049 to 33649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,611 DEBUG Processing 103/899 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,624 DEBUG Processing 63/1136 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,789 DEBUG Processing 203/218 atomic regions from SNP 60802 to 61403 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,880 DEBUG Processing 60/477 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,937 DEBUG Processing 81/1025 atomic regions from SNP 24070 to 24670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,967 DEBUG Processing 112/858 atomic regions from SNP 33349 to 33949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,067 DEBUG Processing 104/899 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,108 DEBUG Processing 64/1136 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,154 DEBUG Processing 204/218 atomic regions from SNP 61103 to 61704 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,197 DEBUG Processing 61/477 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,282 DEBUG Processing 82/1025 atomic regions from SNP 24370 to 24970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,367 DEBUG Processing 113/858 atomic regions from SNP 33649 to 34249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,474 DEBUG Processing 105/899 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,542 DEBUG Processing 62/477 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,544 DEBUG Processing 65/1136 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,548 DEBUG Processing 205/218 atomic regions from SNP 61404 to 62004 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,581 DEBUG Processing 83/1025 atomic regions from SNP 24670 to 25270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,654 DEBUG Processing 114/858 atomic regions from SNP 33949 to 34549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,835 DEBUG Processing 106/899 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,961 DEBUG Processing 63/477 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,008 DEBUG Processing 206/218 atomic regions from SNP 61704 to 62304 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,023 DEBUG Processing 66/1136 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,042 DEBUG Processing 84/1025 atomic regions from SNP 24970 to 25570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,075 DEBUG Processing 115/858 atomic regions from SNP 34249 to 34849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,188 DEBUG Processing 107/899 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,378 DEBUG Processing 64/477 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,456 DEBUG Processing 207/218 atomic regions from SNP 62004 to 62604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,501 DEBUG Processing 67/1136 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,533 DEBUG Processing 85/1025 atomic regions from SNP 25270 to 25870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,572 DEBUG Processing 116/858 atomic regions from SNP 34549 to 35149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,595 DEBUG Processing 108/899 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,735 DEBUG Processing 65/477 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,830 DEBUG Processing 208/218 atomic regions from SNP 62304 to 62904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,925 DEBUG Processing 68/1136 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,946 DEBUG Processing 86/1025 atomic regions from SNP 25570 to 26170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,012 DEBUG Processing 109/899 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,018 DEBUG Processing 117/858 atomic regions from SNP 34849 to 35449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,046 DEBUG Processing 66/477 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,141 DEBUG Processing 209/218 atomic regions from SNP 62604 to 63204 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,281 DEBUG Processing 69/1136 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,325 DEBUG Processing 87/1025 atomic regions from SNP 25870 to 26470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,413 DEBUG Processing 110/899 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,417 DEBUG Processing 118/858 atomic regions from SNP 35149 to 35749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,445 DEBUG Processing 67/477 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,503 DEBUG Processing 210/218 atomic regions from SNP 62904 to 63504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,593 DEBUG Processing 70/1136 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,636 DEBUG Processing 88/1025 atomic regions from SNP 26170 to 26770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,725 DEBUG Processing 111/899 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,734 DEBUG Processing 119/858 atomic regions from SNP 35449 to 36049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,746 DEBUG Processing 68/477 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,903 DEBUG Processing 211/218 atomic regions from SNP 63204 to 63804 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,946 DEBUG Processing 71/1136 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,971 DEBUG Processing 89/1025 atomic regions from SNP 26470 to 27070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,019 DEBUG Processing 112/899 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,028 DEBUG Processing 69/477 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,041 DEBUG Processing 120/858 atomic regions from SNP 35749 to 36349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,250 DEBUG Processing 212/218 atomic regions from SNP 63504 to 64104 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,359 DEBUG Processing 72/1136 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,376 DEBUG Processing 70/477 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,383 DEBUG Processing 90/1025 atomic regions from SNP 26770 to 27370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,383 DEBUG Processing 113/899 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,401 DEBUG Processing 121/858 atomic regions from SNP 36049 to 36649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,479 DEBUG Processing 213/218 atomic regions from SNP 63804 to 64404 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,668 DEBUG Processing 73/1136 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,679 DEBUG Processing 71/477 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,697 DEBUG Processing 114/899 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,704 DEBUG Processing 91/1025 atomic regions from SNP 27070 to 27670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,707 DEBUG Processing 122/858 atomic regions from SNP 36349 to 36949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,772 DEBUG Processing 214/218 atomic regions from SNP 64104 to 64704 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,990 DEBUG Processing 72/477 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,992 DEBUG Processing 74/1136 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,008 DEBUG Processing 115/899 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,024 DEBUG Processing 123/858 atomic regions from SNP 36649 to 37249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,042 DEBUG Processing 92/1025 atomic regions from SNP 27370 to 27970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,115 DEBUG Processing 215/218 atomic regions from SNP 64404 to 65004 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,300 DEBUG Processing 73/477 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,320 DEBUG Processing 116/899 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,333 DEBUG Processing 124/858 atomic regions from SNP 36949 to 37549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,343 DEBUG Processing 75/1136 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,406 DEBUG Processing 93/1025 atomic regions from SNP 27670 to 28270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,460 DEBUG Processing 216/218 atomic regions from SNP 64704 to 65304 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,555 DEBUG Processing 74/477 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,632 DEBUG Processing 117/899 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,633 DEBUG Processing 125/858 atomic regions from SNP 37249 to 37849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,676 DEBUG Processing 76/1136 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,779 DEBUG Processing 94/1025 atomic regions from SNP 27970 to 28570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,820 DEBUG Processing 75/477 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,821 DEBUG Processing 217/218 atomic regions from SNP 65004 to 65604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,897 DEBUG Processing 126/858 atomic regions from SNP 37549 to 38149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,906 DEBUG Processing 118/899 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,977 DEBUG Processing 77/1136 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,169 DEBUG Processing 95/1025 atomic regions from SNP 28270 to 28870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,187 DEBUG Processing 76/477 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,221 DEBUG Processing 218/218 atomic regions from SNP 65304 to 65904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,240 DEBUG Processing 127/858 atomic regions from SNP 37849 to 38449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,249 DEBUG Processing 119/899 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,326 DEBUG Processing 78/1136 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,498 DEBUG Processing 96/1025 atomic regions from SNP 28570 to 29170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,505 DEBUG Unique SNPs positions in subchromosome 1: 65905 2025-01-31 09:43:42,556 DEBUG Processing 77/477 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,627 DEBUG Processing 128/858 atomic regions from SNP 38149 to 38749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,635 DEBUG Subchromosome time: 78.13746655359864, subchromosome SNPs: 65905 2025-01-31 09:43:42,655 DEBUG Processing 120/899 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,685 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:42,736 DEBUG Processing 79/1136 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,793 DEBUG Processing 97/1025 atomic regions from SNP 28870 to 29470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,874 DEBUG Processing 78/477 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,978 DEBUG Processing 129/858 atomic regions from SNP 38449 to 39049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,071 DEBUG Processing 121/899 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,136 DEBUG Processing 79/477 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,141 DEBUG Processing 80/1136 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,152 DEBUG Processing 98/1025 atomic regions from SNP 29170 to 29770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,218 DEBUG Processing 130/858 atomic regions from SNP 38749 to 39349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,392 DEBUG Processing 122/899 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,491 DEBUG Processing 80/477 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,549 DEBUG Processing 131/858 atomic regions from SNP 39049 to 39649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,551 DEBUG Processing 99/1025 atomic regions from SNP 29470 to 30070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,558 DEBUG Processing 81/1136 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,627 DEBUG Processing 123/899 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,735 DEBUG Processing 81/477 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:43,859 DEBUG Processing 132/858 atomic regions from SNP 39349 to 39949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,886 DEBUG Processing 100/1025 atomic regions from SNP 29770 to 30370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,937 DEBUG Processing 82/1136 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,951 DEBUG Processing 124/899 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,980 DEBUG Processing 82/477 atomic regions from SNP 24381 to 24981 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,176 DEBUG Processing 133/858 atomic regions from SNP 39649 to 40249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,285 DEBUG Processing 101/1025 atomic regions from SNP 30070 to 30670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,357 DEBUG Processing 125/899 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,367 DEBUG Processing 83/477 atomic regions from SNP 24681 to 25281 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,369 DEBUG Processing 83/1136 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,415 DEBUG Processing 134/858 atomic regions from SNP 39949 to 40549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,540 DEBUG Processing 102/1025 atomic regions from SNP 30370 to 30970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,750 DEBUG Processing 126/899 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,816 DEBUG Processing 84/477 atomic regions from SNP 24981 to 25581 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:44,832 DEBUG Processing 84/1136 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,862 DEBUG Processing 135/858 atomic regions from SNP 40249 to 40849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,891 DEBUG Processing 103/1025 atomic regions from SNP 30670 to 31270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,979 DEBUG Processing 127/899 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,107 DEBUG Processing 85/477 atomic regions from SNP 25281 to 25881 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,163 DEBUG Processing 85/1136 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,167 DEBUG Processing 136/858 atomic regions from SNP 40549 to 41149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,196 DEBUG Processing 104/1025 atomic regions from SNP 30970 to 31570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,226 DEBUG Processing 128/899 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,325 DEBUG Processing 86/477 atomic regions from SNP 25581 to 26181 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,425 DEBUG Processing 137/858 atomic regions from SNP 40849 to 41449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,457 DEBUG Processing 86/1136 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,481 DEBUG Processing 105/1025 atomic regions from SNP 31270 to 31870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,523 DEBUG Processing 129/899 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,576 DEBUG Processing 87/477 atomic regions from SNP 25881 to 26481 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,650 DEBUG Processing 138/858 atomic regions from SNP 41149 to 41749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,723 DEBUG Processing 87/1136 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,732 DEBUG Processing 106/1025 atomic regions from SNP 31570 to 32170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,800 DEBUG Processing 130/899 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,881 DEBUG Processing 88/477 atomic regions from SNP 26181 to 26781 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:45,938 DEBUG Processing 139/858 atomic regions from SNP 41449 to 42049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,005 DEBUG Processing 107/1025 atomic regions from SNP 31870 to 32470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,017 DEBUG Processing 88/1136 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,031 DEBUG Processing 131/899 atomic regions from SNP 39130 to 39730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,115 DEBUG Processing 89/477 atomic regions from SNP 26481 to 27081 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,264 DEBUG Processing 140/858 atomic regions from SNP 41749 to 42349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,342 DEBUG Processing 132/899 atomic regions from SNP 39430 to 40030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,353 DEBUG Processing 108/1025 atomic regions from SNP 32170 to 32770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,357 DEBUG Processing 90/477 atomic regions from SNP 26781 to 27381 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,375 DEBUG Processing 89/1136 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,533 DEBUG Processing 141/858 atomic regions from SNP 42049 to 42649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,715 DEBUG Processing 133/899 atomic regions from SNP 39730 to 40330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,717 DEBUG Processing 91/477 atomic regions from SNP 27081 to 27681 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:46,751 DEBUG Processing 109/1025 atomic regions from SNP 32470 to 33070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,782 DEBUG Processing 90/1136 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,801 DEBUG Processing 142/858 atomic regions from SNP 42349 to 42949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,082 DEBUG Processing 92/477 atomic regions from SNP 27381 to 27981 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,107 DEBUG Processing 134/899 atomic regions from SNP 40030 to 40630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,160 DEBUG Processing 110/1025 atomic regions from SNP 32770 to 33370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,162 DEBUG Processing 143/858 atomic regions from SNP 42649 to 43249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,195 DEBUG Processing 91/1136 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,441 DEBUG Processing 93/477 atomic regions from SNP 27681 to 28281 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,506 DEBUG Processing 135/899 atomic regions from SNP 40330 to 40930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,560 DEBUG Processing 144/858 atomic regions from SNP 42949 to 43549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,578 DEBUG Processing 111/1025 atomic regions from SNP 33070 to 33670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,618 DEBUG Processing 92/1136 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,782 DEBUG Processing 94/477 atomic regions from SNP 27981 to 28581 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:47,923 DEBUG Processing 136/899 atomic regions from SNP 40630 to 41230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,977 DEBUG Processing 145/858 atomic regions from SNP 43249 to 43849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,008 DEBUG Processing 112/1025 atomic regions from SNP 33370 to 33970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,056 DEBUG Processing 93/1136 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,146 DEBUG Processing 95/477 atomic regions from SNP 28281 to 28881 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,329 DEBUG Processing 137/899 atomic regions from SNP 40930 to 41530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,379 DEBUG Processing 146/858 atomic regions from SNP 43549 to 44149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,404 DEBUG Processing 113/1025 atomic regions from SNP 33670 to 34270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,471 DEBUG Processing 94/1136 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,552 DEBUG Processing 96/477 atomic regions from SNP 28581 to 29181 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:48,742 DEBUG Processing 138/899 atomic regions from SNP 41230 to 41830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,787 DEBUG Processing 147/858 atomic regions from SNP 43849 to 44449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,820 DEBUG Processing 114/1025 atomic regions from SNP 33970 to 34570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,874 DEBUG Processing 95/1136 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,966 DEBUG Processing 97/477 atomic regions from SNP 28881 to 29481 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,162 DEBUG Processing 139/899 atomic regions from SNP 41530 to 42130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,220 DEBUG Processing 148/858 atomic regions from SNP 44149 to 44749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,246 DEBUG Processing 115/1025 atomic regions from SNP 34270 to 34870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,306 DEBUG Processing 96/1136 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,381 DEBUG Processing 98/477 atomic regions from SNP 29181 to 29781 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,573 DEBUG Processing 140/899 atomic regions from SNP 41830 to 42430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,644 DEBUG Processing 149/858 atomic regions from SNP 44449 to 45049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,669 DEBUG Processing 116/1025 atomic regions from SNP 34570 to 35170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,728 DEBUG Processing 97/1136 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,777 DEBUG Processing 99/477 atomic regions from SNP 29481 to 30081 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:49,977 DEBUG Processing 141/899 atomic regions from SNP 42130 to 42730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,068 DEBUG Processing 150/858 atomic regions from SNP 44749 to 45349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,086 DEBUG Processing 117/1025 atomic regions from SNP 34870 to 35470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,154 DEBUG Processing 98/1136 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,167 DEBUG Processing 100/477 atomic regions from SNP 29781 to 30381 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,417 DEBUG Processing 142/899 atomic regions from SNP 42430 to 43030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,487 DEBUG Processing 151/858 atomic regions from SNP 45049 to 45649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,504 DEBUG Processing 118/1025 atomic regions from SNP 35170 to 35770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,523 DEBUG Processing 101/477 atomic regions from SNP 30081 to 30681 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,554 DEBUG Processing 99/1136 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,845 DEBUG Processing 143/899 atomic regions from SNP 42730 to 43330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,912 DEBUG Processing 152/858 atomic regions from SNP 45349 to 45949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,916 DEBUG Processing 102/477 atomic regions from SNP 30381 to 30981 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:50,939 DEBUG Processing 119/1025 atomic regions from SNP 35470 to 36070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,969 DEBUG Processing 100/1136 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,086 DEBUG Processing 144/899 atomic regions from SNP 43030 to 43630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,268 DEBUG Processing 103/477 atomic regions from SNP 30681 to 31281 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,333 DEBUG Processing 153/858 atomic regions from SNP 45649 to 46249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,351 DEBUG Processing 120/1025 atomic regions from SNP 35770 to 36370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,393 DEBUG Processing 101/1136 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,415 DEBUG Processing 145/899 atomic regions from SNP 43330 to 43930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,548 DEBUG Processing 104/477 atomic regions from SNP 30981 to 31581 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:51,763 DEBUG Processing 154/858 atomic regions from SNP 45949 to 46549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,763 DEBUG Processing 121/1025 atomic regions from SNP 36070 to 36670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,830 DEBUG Processing 146/899 atomic regions from SNP 43630 to 44230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,836 DEBUG Processing 102/1136 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,863 DEBUG Processing 105/477 atomic regions from SNP 31281 to 31881 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,169 DEBUG Processing 155/858 atomic regions from SNP 46249 to 46849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,176 DEBUG Processing 122/1025 atomic regions from SNP 36370 to 36970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,248 DEBUG Processing 147/899 atomic regions from SNP 43930 to 44530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,263 DEBUG Processing 106/477 atomic regions from SNP 31581 to 32181 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,291 DEBUG Processing 103/1136 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,562 DEBUG Processing 156/858 atomic regions from SNP 46549 to 47149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,593 DEBUG Processing 123/1025 atomic regions from SNP 36670 to 37270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,671 DEBUG Processing 107/477 atomic regions from SNP 31881 to 32481 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:52,674 DEBUG Processing 148/899 atomic regions from SNP 44230 to 44830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,750 DEBUG Processing 104/1136 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,952 DEBUG Processing 157/858 atomic regions from SNP 46849 to 47449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,002 DEBUG Processing 124/1025 atomic regions from SNP 36970 to 37570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,071 DEBUG Processing 108/477 atomic regions from SNP 32181 to 32781 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,097 DEBUG Processing 149/899 atomic regions from SNP 44530 to 45130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,194 DEBUG Processing 105/1136 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,362 DEBUG Processing 158/858 atomic regions from SNP 47149 to 47749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,443 DEBUG Processing 125/1025 atomic regions from SNP 37270 to 37870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,471 DEBUG Processing 109/477 atomic regions from SNP 32481 to 33081 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,525 DEBUG Processing 150/899 atomic regions from SNP 44830 to 45430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,658 DEBUG Processing 106/1136 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,814 DEBUG Processing 159/858 atomic regions from SNP 47449 to 48049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,882 DEBUG Processing 110/477 atomic regions from SNP 32781 to 33381 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:53,889 DEBUG Processing 126/1025 atomic regions from SNP 37570 to 38170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,957 DEBUG Processing 151/899 atomic regions from SNP 45130 to 45730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,115 DEBUG Processing 107/1136 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,269 DEBUG Processing 160/858 atomic regions from SNP 47749 to 48349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,320 DEBUG Processing 111/477 atomic regions from SNP 33081 to 33681 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,340 DEBUG Processing 127/1025 atomic regions from SNP 37870 to 38470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,386 DEBUG Processing 152/899 atomic regions from SNP 45430 to 46030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,507 DEBUG Processing 108/1136 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,635 DEBUG Processing 161/858 atomic regions from SNP 48049 to 48649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,710 DEBUG Processing 112/477 atomic regions from SNP 33381 to 33981 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:54,751 DEBUG Processing 128/1025 atomic regions from SNP 38170 to 38770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,782 DEBUG Processing 153/899 atomic regions from SNP 45730 to 46330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,852 DEBUG Processing 109/1136 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,880 DEBUG Processing 162/858 atomic regions from SNP 48349 to 48949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,936 DEBUG Processing 113/477 atomic regions from SNP 33681 to 34281 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,069 DEBUG Processing 129/1025 atomic regions from SNP 38470 to 39070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,120 DEBUG Processing 154/899 atomic regions from SNP 46030 to 46630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,180 DEBUG Processing 163/858 atomic regions from SNP 48649 to 49249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,192 DEBUG Processing 114/477 atomic regions from SNP 33981 to 34581 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,208 DEBUG Processing 110/1136 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,355 DEBUG Processing 130/1025 atomic regions from SNP 38770 to 39370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,422 DEBUG Processing 155/899 atomic regions from SNP 46330 to 46930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,544 DEBUG Processing 115/477 atomic regions from SNP 34281 to 34881 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,547 DEBUG Processing 164/858 atomic regions from SNP 48949 to 49549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,600 DEBUG Processing 111/1136 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,696 DEBUG Processing 156/899 atomic regions from SNP 46630 to 47230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,697 DEBUG Processing 131/1025 atomic regions from SNP 39070 to 39670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,892 DEBUG Processing 116/477 atomic regions from SNP 34581 to 35181 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:55,942 DEBUG Processing 165/858 atomic regions from SNP 49249 to 49849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,001 DEBUG Processing 112/1136 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,036 DEBUG Processing 157/899 atomic regions from SNP 46930 to 47530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,070 DEBUG Processing 132/1025 atomic regions from SNP 39370 to 39970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,185 DEBUG Processing 117/477 atomic regions from SNP 34881 to 35481 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,330 DEBUG Processing 166/858 atomic regions from SNP 49549 to 50149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,437 DEBUG Processing 113/1136 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,438 DEBUG Processing 158/899 atomic regions from SNP 47230 to 47830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,488 DEBUG Processing 133/1025 atomic regions from SNP 39670 to 40270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,501 DEBUG Processing 118/477 atomic regions from SNP 35181 to 35781 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,669 DEBUG Processing 167/858 atomic regions from SNP 49849 to 50449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,879 DEBUG Processing 159/899 atomic regions from SNP 47530 to 48130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,893 DEBUG Processing 114/1136 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,911 DEBUG Processing 119/477 atomic regions from SNP 35481 to 36081 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:56,945 DEBUG Processing 134/1025 atomic regions from SNP 39970 to 40570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,991 DEBUG Processing 168/858 atomic regions from SNP 50149 to 50749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,301 DEBUG Processing 160/899 atomic regions from SNP 47830 to 48430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,303 DEBUG Processing 120/477 atomic regions from SNP 35781 to 36381 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,338 DEBUG Processing 115/1136 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,419 DEBUG Processing 169/858 atomic regions from SNP 50449 to 51049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,429 DEBUG Processing 135/1025 atomic regions from SNP 40270 to 40870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,668 DEBUG Processing 121/477 atomic regions from SNP 36081 to 36681 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,669 DEBUG Processing 161/899 atomic regions from SNP 48130 to 48730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,778 DEBUG Processing 116/1136 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,899 DEBUG Processing 170/858 atomic regions from SNP 50749 to 51349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,922 DEBUG Processing 136/1025 atomic regions from SNP 40570 to 41170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,974 DEBUG Processing 122/477 atomic regions from SNP 36381 to 36981 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:57,998 DEBUG Processing 162/899 atomic regions from SNP 48430 to 49030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,103 DEBUG Processing 117/1136 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,305 DEBUG Processing 171/858 atomic regions from SNP 51049 to 51649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,328 DEBUG Processing 123/477 atomic regions from SNP 36681 to 37281 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,354 DEBUG Processing 163/899 atomic regions from SNP 48730 to 49330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,357 DEBUG Processing 137/1025 atomic regions from SNP 40870 to 41470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,419 DEBUG Processing 118/1136 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,650 DEBUG Processing 172/858 atomic regions from SNP 51349 to 51949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,680 DEBUG Processing 124/477 atomic regions from SNP 36981 to 37581 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:58,710 DEBUG Processing 164/899 atomic regions from SNP 49030 to 49630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,757 DEBUG Processing 138/1025 atomic regions from SNP 41170 to 41770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,789 DEBUG Processing 119/1136 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,930 DEBUG Processing 173/858 atomic regions from SNP 51649 to 52249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,943 DEBUG Processing 125/477 atomic regions from SNP 37281 to 37881 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,015 DEBUG Processing 165/899 atomic regions from SNP 49330 to 49930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,111 DEBUG Processing 139/1025 atomic regions from SNP 41470 to 42070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,122 DEBUG Processing 120/1136 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,173 DEBUG Processing 126/477 atomic regions from SNP 37581 to 38181 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,205 DEBUG Processing 174/858 atomic regions from SNP 51949 to 52549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,292 DEBUG Processing 166/899 atomic regions from SNP 49630 to 50230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,440 DEBUG Processing 127/477 atomic regions from SNP 37881 to 38481 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,441 DEBUG Processing 140/1025 atomic regions from SNP 41770 to 42370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,445 DEBUG Processing 121/1136 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,502 DEBUG Processing 175/858 atomic regions from SNP 52249 to 52849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,570 DEBUG Processing 167/899 atomic regions from SNP 49930 to 50530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,737 DEBUG Processing 128/477 atomic regions from SNP 38181 to 38781 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:59,787 DEBUG Processing 141/1025 atomic regions from SNP 42070 to 42670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,794 DEBUG Processing 122/1136 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,806 DEBUG Processing 176/858 atomic regions from SNP 52549 to 53149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,854 DEBUG Processing 168/899 atomic regions from SNP 50230 to 50830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,955 DEBUG Processing 129/477 atomic regions from SNP 38481 to 39081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,098 DEBUG Processing 123/1136 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,103 DEBUG Processing 142/1025 atomic regions from SNP 42370 to 42970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,114 DEBUG Processing 177/858 atomic regions from SNP 52849 to 53449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,154 DEBUG Processing 169/899 atomic regions from SNP 50530 to 51130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,207 DEBUG Processing 130/477 atomic regions from SNP 38781 to 39381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,402 DEBUG Processing 178/858 atomic regions from SNP 53149 to 53749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,408 DEBUG Processing 124/1136 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,413 DEBUG Processing 143/1025 atomic regions from SNP 42670 to 43270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,417 DEBUG Processing 170/899 atomic regions from SNP 50830 to 51430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,440 DEBUG Processing 131/477 atomic regions from SNP 39081 to 39681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,655 DEBUG Processing 179/858 atomic regions from SNP 53449 to 54049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,664 DEBUG Processing 171/899 atomic regions from SNP 51130 to 51730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,672 DEBUG Processing 132/477 atomic regions from SNP 39381 to 39981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,690 DEBUG Processing 125/1136 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,704 DEBUG Processing 144/1025 atomic regions from SNP 42970 to 43570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,906 DEBUG Processing 172/899 atomic regions from SNP 51430 to 52030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,907 DEBUG Processing 133/477 atomic regions from SNP 39681 to 40281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:00,907 DEBUG Processing 180/858 atomic regions from SNP 53749 to 54349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,972 DEBUG Processing 126/1136 atomic regions from SNP 37625 to 38225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,999 DEBUG Processing 145/1025 atomic regions from SNP 43270 to 43870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,136 DEBUG Processing 134/477 atomic regions from SNP 39981 to 40581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,153 DEBUG Processing 173/899 atomic regions from SNP 51730 to 52330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,164 DEBUG Processing 181/858 atomic regions from SNP 54049 to 54649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,250 DEBUG Processing 127/1136 atomic regions from SNP 37925 to 38525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,291 DEBUG Processing 146/1025 atomic regions from SNP 43570 to 44170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,362 DEBUG Processing 135/477 atomic regions from SNP 40281 to 40881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,404 DEBUG Processing 174/899 atomic regions from SNP 52030 to 52630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,407 DEBUG Processing 182/858 atomic regions from SNP 54349 to 54949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,525 DEBUG Processing 128/1136 atomic regions from SNP 38225 to 38825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,572 DEBUG Processing 147/1025 atomic regions from SNP 43870 to 44470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,584 DEBUG Processing 136/477 atomic regions from SNP 40581 to 41181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,643 DEBUG Processing 183/858 atomic regions from SNP 54649 to 55249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,647 DEBUG Processing 175/899 atomic regions from SNP 52330 to 52930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,797 DEBUG Processing 129/1136 atomic regions from SNP 38525 to 39125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,805 DEBUG Processing 137/477 atomic regions from SNP 40881 to 41481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:01,851 DEBUG Processing 148/1025 atomic regions from SNP 44170 to 44770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,877 DEBUG Processing 184/858 atomic regions from SNP 54949 to 55549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,889 DEBUG Processing 176/899 atomic regions from SNP 52630 to 53230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,027 DEBUG Processing 138/477 atomic regions from SNP 41181 to 41781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,071 DEBUG Processing 130/1136 atomic regions from SNP 38825 to 39425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,108 DEBUG Processing 185/858 atomic regions from SNP 55249 to 55849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,126 DEBUG Processing 149/1025 atomic regions from SNP 44470 to 45070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,126 DEBUG Processing 177/899 atomic regions from SNP 52930 to 53530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,255 DEBUG Processing 139/477 atomic regions from SNP 41481 to 42081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,342 DEBUG Processing 131/1136 atomic regions from SNP 39125 to 39725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,350 DEBUG Processing 186/858 atomic regions from SNP 55549 to 56149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,362 DEBUG Processing 178/899 atomic regions from SNP 53230 to 53830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,401 DEBUG Processing 150/1025 atomic regions from SNP 44770 to 45370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,482 DEBUG Processing 140/477 atomic regions from SNP 41781 to 42381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,603 DEBUG Processing 187/858 atomic regions from SNP 55849 to 56449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,604 DEBUG Processing 179/899 atomic regions from SNP 53530 to 54130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,615 DEBUG Processing 132/1136 atomic regions from SNP 39425 to 40025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,684 DEBUG Processing 151/1025 atomic regions from SNP 45070 to 45670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,708 DEBUG Processing 141/477 atomic regions from SNP 42081 to 42681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,849 DEBUG Processing 180/899 atomic regions from SNP 53830 to 54430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,867 DEBUG Processing 188/858 atomic regions from SNP 56149 to 56749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,892 DEBUG Processing 133/1136 atomic regions from SNP 39725 to 40325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,931 DEBUG Processing 142/477 atomic regions from SNP 42381 to 42981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:02,976 DEBUG Processing 152/1025 atomic regions from SNP 45370 to 45970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,087 DEBUG Processing 181/899 atomic regions from SNP 54130 to 54730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,117 DEBUG Processing 189/858 atomic regions from SNP 56449 to 57049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,158 DEBUG Processing 143/477 atomic regions from SNP 42681 to 43281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,170 DEBUG Processing 134/1136 atomic regions from SNP 40025 to 40625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,259 DEBUG Processing 153/1025 atomic regions from SNP 45670 to 46270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,327 DEBUG Processing 182/899 atomic regions from SNP 54430 to 55030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,356 DEBUG Processing 190/858 atomic regions from SNP 56749 to 57349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,388 DEBUG Processing 144/477 atomic regions from SNP 42981 to 43581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,445 DEBUG Processing 135/1136 atomic regions from SNP 40325 to 40925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,523 DEBUG Processing 154/1025 atomic regions from SNP 45970 to 46570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,568 DEBUG Processing 183/899 atomic regions from SNP 54730 to 55330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,595 DEBUG Processing 191/858 atomic regions from SNP 57049 to 57649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,621 DEBUG Processing 145/477 atomic regions from SNP 43281 to 43881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,719 DEBUG Processing 136/1136 atomic regions from SNP 40625 to 41225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,780 DEBUG Processing 155/1025 atomic regions from SNP 46270 to 46870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,808 DEBUG Processing 184/899 atomic regions from SNP 55030 to 55630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,836 DEBUG Processing 192/858 atomic regions from SNP 57349 to 57949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,851 DEBUG Processing 146/477 atomic regions from SNP 43581 to 44181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:03,991 DEBUG Processing 137/1136 atomic regions from SNP 40925 to 41525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,046 DEBUG Processing 185/899 atomic regions from SNP 55330 to 55930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,048 DEBUG Processing 156/1025 atomic regions from SNP 46570 to 47170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,074 DEBUG Processing 193/858 atomic regions from SNP 57649 to 58249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,079 DEBUG Processing 147/477 atomic regions from SNP 43881 to 44481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,264 DEBUG Processing 138/1136 atomic regions from SNP 41225 to 41825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,283 DEBUG Processing 186/899 atomic regions from SNP 55630 to 56230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,299 DEBUG Processing 148/477 atomic regions from SNP 44181 to 44781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,306 DEBUG Processing 194/858 atomic regions from SNP 57949 to 58549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,311 DEBUG Processing 157/1025 atomic regions from SNP 46870 to 47470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,520 DEBUG Processing 187/899 atomic regions from SNP 55930 to 56530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,528 DEBUG Processing 149/477 atomic regions from SNP 44481 to 45081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,540 DEBUG Processing 195/858 atomic regions from SNP 58249 to 58849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,545 DEBUG Processing 139/1136 atomic regions from SNP 41525 to 42125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,587 DEBUG Processing 158/1025 atomic regions from SNP 47170 to 47770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,757 DEBUG Processing 150/477 atomic regions from SNP 44781 to 45381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:04,760 DEBUG Processing 188/899 atomic regions from SNP 56230 to 56830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,778 DEBUG Processing 196/858 atomic regions from SNP 58549 to 59149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,821 DEBUG Processing 140/1136 atomic regions from SNP 41825 to 42425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,869 DEBUG Processing 159/1025 atomic regions from SNP 47470 to 48070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,988 DEBUG Processing 151/477 atomic regions from SNP 45081 to 45681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,007 DEBUG Processing 189/899 atomic regions from SNP 56530 to 57130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,026 DEBUG Processing 197/858 atomic regions from SNP 58849 to 59449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,094 DEBUG Processing 141/1136 atomic regions from SNP 42125 to 42725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,155 DEBUG Processing 160/1025 atomic regions from SNP 47770 to 48370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,220 DEBUG Processing 152/477 atomic regions from SNP 45381 to 45981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,258 DEBUG Processing 190/899 atomic regions from SNP 56830 to 57430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,277 DEBUG Processing 198/858 atomic regions from SNP 59149 to 59749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,380 DEBUG Processing 142/1136 atomic regions from SNP 42425 to 43025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,448 DEBUG Processing 153/477 atomic regions from SNP 45681 to 46281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,459 DEBUG Processing 161/1025 atomic regions from SNP 48070 to 48670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,504 DEBUG Processing 191/899 atomic regions from SNP 57130 to 57730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,536 DEBUG Processing 199/858 atomic regions from SNP 59449 to 60049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,649 DEBUG Processing 143/1136 atomic regions from SNP 42725 to 43325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,677 DEBUG Processing 154/477 atomic regions from SNP 45981 to 46581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,751 DEBUG Processing 192/899 atomic regions from SNP 57430 to 58030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,755 DEBUG Processing 162/1025 atomic regions from SNP 48370 to 48970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,783 DEBUG Processing 200/858 atomic regions from SNP 59749 to 60349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,900 DEBUG Processing 155/477 atomic regions from SNP 46281 to 46881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:05,920 DEBUG Processing 144/1136 atomic regions from SNP 43025 to 43625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,997 DEBUG Processing 193/899 atomic regions from SNP 57730 to 58330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,029 DEBUG Processing 201/858 atomic regions from SNP 60049 to 60649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,051 DEBUG Processing 163/1025 atomic regions from SNP 48670 to 49270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,126 DEBUG Processing 156/477 atomic regions from SNP 46581 to 47181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,192 DEBUG Processing 145/1136 atomic regions from SNP 43325 to 43925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,243 DEBUG Processing 194/899 atomic regions from SNP 58030 to 58630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,276 DEBUG Processing 202/858 atomic regions from SNP 60349 to 60949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,342 DEBUG Processing 164/1025 atomic regions from SNP 48970 to 49570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,354 DEBUG Processing 157/477 atomic regions from SNP 46881 to 47481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,458 DEBUG Processing 146/1136 atomic regions from SNP 43625 to 44225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,486 DEBUG Processing 195/899 atomic regions from SNP 58330 to 58930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,493 DEBUG Segmenting atomic regions: 2025-01-31 09:44:06,520 DEBUG Processing 203/858 atomic regions from SNP 60649 to 61249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,586 DEBUG Processing 158/477 atomic regions from SNP 47181 to 47781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,612 DEBUG Processing 1/650 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,626 DEBUG Processing 165/1025 atomic regions from SNP 49270 to 49870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,724 DEBUG Processing 196/899 atomic regions from SNP 58630 to 59230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,727 DEBUG Processing 147/1136 atomic regions from SNP 43925 to 44525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,761 DEBUG Processing 204/858 atomic regions from SNP 60949 to 61549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,816 DEBUG Processing 159/477 atomic regions from SNP 47481 to 48081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:06,875 DEBUG Processing 2/650 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,915 DEBUG Processing 166/1025 atomic regions from SNP 49570 to 50170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,969 DEBUG Processing 197/899 atomic regions from SNP 58930 to 59530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,000 DEBUG Processing 148/1136 atomic regions from SNP 44225 to 44825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,003 DEBUG Processing 205/858 atomic regions from SNP 61249 to 61849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,047 DEBUG Processing 160/477 atomic regions from SNP 47781 to 48381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,133 DEBUG Processing 3/650 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,200 DEBUG Processing 167/1025 atomic regions from SNP 49870 to 50470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,213 DEBUG Processing 198/899 atomic regions from SNP 59230 to 59830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,250 DEBUG Processing 206/858 atomic regions from SNP 61549 to 62149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,280 DEBUG Processing 149/1136 atomic regions from SNP 44525 to 45125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,283 DEBUG Processing 161/477 atomic regions from SNP 48081 to 48681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,367 DEBUG Processing 4/650 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,456 DEBUG Processing 199/899 atomic regions from SNP 59530 to 60130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,478 DEBUG Processing 168/1025 atomic regions from SNP 50170 to 50770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,496 DEBUG Processing 207/858 atomic regions from SNP 61849 to 62449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,520 DEBUG Processing 162/477 atomic regions from SNP 48381 to 48981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,567 DEBUG Processing 150/1136 atomic regions from SNP 44825 to 45425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,634 DEBUG Processing 5/650 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,693 DEBUG Processing 200/899 atomic regions from SNP 59830 to 60430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,737 DEBUG Processing 208/858 atomic regions from SNP 62149 to 62749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,758 DEBUG Processing 163/477 atomic regions from SNP 48681 to 49281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:07,759 DEBUG Processing 169/1025 atomic regions from SNP 50470 to 51070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,853 DEBUG Processing 151/1136 atomic regions from SNP 45125 to 45725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,911 DEBUG Processing 6/650 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,934 DEBUG Processing 201/899 atomic regions from SNP 60130 to 60730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,987 DEBUG Processing 209/858 atomic regions from SNP 62449 to 63049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,987 DEBUG Processing 164/477 atomic regions from SNP 48981 to 49581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,047 DEBUG Processing 170/1025 atomic regions from SNP 50770 to 51370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,137 DEBUG Processing 152/1136 atomic regions from SNP 45425 to 46025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,166 DEBUG Processing 7/650 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,175 DEBUG Processing 202/899 atomic regions from SNP 60430 to 61030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,205 DEBUG Processing 165/477 atomic regions from SNP 49281 to 49881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,220 DEBUG Processing 210/858 atomic regions from SNP 62749 to 63349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,343 DEBUG Processing 171/1025 atomic regions from SNP 51070 to 51670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,421 DEBUG Processing 8/650 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,422 DEBUG Processing 153/1136 atomic regions from SNP 45725 to 46325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,425 DEBUG Processing 166/477 atomic regions from SNP 49581 to 50181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,427 DEBUG Processing 203/899 atomic regions from SNP 60730 to 61330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,456 DEBUG Processing 211/858 atomic regions from SNP 63049 to 63649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,645 DEBUG Processing 172/1025 atomic regions from SNP 51370 to 51970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,657 DEBUG Processing 167/477 atomic regions from SNP 49881 to 50481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,685 DEBUG Processing 204/899 atomic regions from SNP 61030 to 61630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,688 DEBUG Processing 9/650 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,703 DEBUG Processing 212/858 atomic regions from SNP 63349 to 63949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,704 DEBUG Processing 154/1136 atomic regions from SNP 46025 to 46625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,894 DEBUG Processing 168/477 atomic regions from SNP 50181 to 50781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:08,939 DEBUG Processing 173/1025 atomic regions from SNP 51670 to 52270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,941 DEBUG Processing 205/899 atomic regions from SNP 61330 to 61930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,954 DEBUG Processing 213/858 atomic regions from SNP 63649 to 64249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,956 DEBUG Processing 10/650 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,986 DEBUG Processing 155/1136 atomic regions from SNP 46325 to 46925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,121 DEBUG Processing 169/477 atomic regions from SNP 50481 to 51081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,199 DEBUG Processing 206/899 atomic regions from SNP 61630 to 62230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,205 DEBUG Processing 214/858 atomic regions from SNP 63949 to 64549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,219 DEBUG Processing 11/650 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,242 DEBUG Processing 174/1025 atomic regions from SNP 51970 to 52570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,272 DEBUG Processing 156/1136 atomic regions from SNP 46625 to 47225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,344 DEBUG Processing 170/477 atomic regions from SNP 50781 to 51381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,450 DEBUG Processing 215/858 atomic regions from SNP 64249 to 64849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,451 DEBUG Processing 207/899 atomic regions from SNP 61930 to 62530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,473 DEBUG Processing 12/650 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,551 DEBUG Processing 175/1025 atomic regions from SNP 52270 to 52870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,553 DEBUG Processing 157/1136 atomic regions from SNP 46925 to 47525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,566 DEBUG Processing 171/477 atomic regions from SNP 51081 to 51681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,692 DEBUG Processing 216/858 atomic regions from SNP 64549 to 65149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,696 DEBUG Processing 208/899 atomic regions from SNP 62230 to 62830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,715 DEBUG Processing 13/650 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,796 DEBUG Processing 172/477 atomic regions from SNP 51381 to 51981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:09,834 DEBUG Processing 158/1136 atomic regions from SNP 47225 to 47825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,856 DEBUG Processing 176/1025 atomic regions from SNP 52570 to 53170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,931 DEBUG Processing 217/858 atomic regions from SNP 64849 to 65449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,943 DEBUG Processing 209/899 atomic regions from SNP 62530 to 63130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,962 DEBUG Processing 14/650 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,023 DEBUG Processing 173/477 atomic regions from SNP 51681 to 52281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,107 DEBUG Processing 159/1136 atomic regions from SNP 47525 to 48125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,153 DEBUG Processing 177/1025 atomic regions from SNP 52870 to 53470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,170 DEBUG Processing 218/858 atomic regions from SNP 65149 to 65749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,190 DEBUG Processing 210/899 atomic regions from SNP 62830 to 63430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,225 DEBUG Processing 15/650 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,250 DEBUG Processing 174/477 atomic regions from SNP 51981 to 52581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,377 DEBUG Processing 160/1136 atomic regions from SNP 47825 to 48425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,409 DEBUG Processing 219/858 atomic regions from SNP 65449 to 66049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,434 DEBUG Processing 211/899 atomic regions from SNP 63130 to 63730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,452 DEBUG Processing 178/1025 atomic regions from SNP 53170 to 53770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,478 DEBUG Processing 16/650 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,482 DEBUG Processing 175/477 atomic regions from SNP 52281 to 52881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,639 DEBUG Processing 220/858 atomic regions from SNP 65749 to 66349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,640 DEBUG Processing 161/1136 atomic regions from SNP 48125 to 48725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,675 DEBUG Processing 212/899 atomic regions from SNP 63430 to 64030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,717 DEBUG Processing 176/477 atomic regions from SNP 52581 to 53181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:10,743 DEBUG Processing 17/650 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,763 DEBUG Processing 179/1025 atomic regions from SNP 53470 to 54070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,869 DEBUG Processing 221/858 atomic regions from SNP 66049 to 66649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,908 DEBUG Processing 162/1136 atomic regions from SNP 48425 to 49025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,912 DEBUG Processing 213/899 atomic regions from SNP 63730 to 64330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,945 DEBUG Processing 177/477 atomic regions from SNP 52881 to 53481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,002 DEBUG Processing 18/650 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,063 DEBUG Processing 180/1025 atomic regions from SNP 53770 to 54370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,103 DEBUG Processing 222/858 atomic regions from SNP 66349 to 66949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,151 DEBUG Processing 214/899 atomic regions from SNP 64030 to 64630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,173 DEBUG Processing 178/477 atomic regions from SNP 53181 to 53781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,182 DEBUG Processing 163/1136 atomic regions from SNP 48725 to 49325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,260 DEBUG Processing 19/650 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,341 DEBUG Processing 223/858 atomic regions from SNP 66649 to 67249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,352 DEBUG Processing 181/1025 atomic regions from SNP 54070 to 54670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,400 DEBUG Processing 215/899 atomic regions from SNP 64330 to 64930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,407 DEBUG Processing 179/477 atomic regions from SNP 53481 to 54081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,464 DEBUG Processing 164/1136 atomic regions from SNP 49025 to 49625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,527 DEBUG Processing 20/650 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,583 DEBUG Processing 224/858 atomic regions from SNP 66949 to 67549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,622 DEBUG Processing 182/1025 atomic regions from SNP 54370 to 54970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,641 DEBUG Processing 180/477 atomic regions from SNP 53781 to 54381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,645 DEBUG Processing 216/899 atomic regions from SNP 64630 to 65230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,744 DEBUG Processing 165/1136 atomic regions from SNP 49325 to 49925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,791 DEBUG Processing 21/650 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,818 DEBUG Processing 225/858 atomic regions from SNP 67249 to 67849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,873 DEBUG Processing 181/477 atomic regions from SNP 54081 to 54681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:11,891 DEBUG Processing 217/899 atomic regions from SNP 64930 to 65530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,896 DEBUG Processing 183/1025 atomic regions from SNP 54670 to 55270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,021 DEBUG Processing 166/1136 atomic regions from SNP 49625 to 50225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,042 DEBUG Processing 22/650 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,051 DEBUG Processing 226/858 atomic regions from SNP 67549 to 68149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,099 DEBUG Processing 182/477 atomic regions from SNP 54381 to 54981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,134 DEBUG Processing 218/899 atomic regions from SNP 65230 to 65830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,175 DEBUG Processing 184/1025 atomic regions from SNP 54970 to 55570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,285 DEBUG Processing 227/858 atomic regions from SNP 67849 to 68449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,292 DEBUG Processing 23/650 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,297 DEBUG Processing 167/1136 atomic regions from SNP 49925 to 50525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,317 DEBUG Processing 183/477 atomic regions from SNP 54681 to 55281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,372 DEBUG Processing 219/899 atomic regions from SNP 65530 to 66130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,458 DEBUG Processing 185/1025 atomic regions from SNP 55270 to 55870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,522 DEBUG Processing 228/858 atomic regions from SNP 68149 to 68749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,542 DEBUG Processing 184/477 atomic regions from SNP 54981 to 55581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,560 DEBUG Processing 24/650 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,574 DEBUG Processing 168/1136 atomic regions from SNP 50225 to 50825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,611 DEBUG Processing 220/899 atomic regions from SNP 65830 to 66430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,751 DEBUG Processing 186/1025 atomic regions from SNP 55570 to 56170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,761 DEBUG Processing 229/858 atomic regions from SNP 68449 to 69049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,775 DEBUG Processing 185/477 atomic regions from SNP 55281 to 55881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:12,816 DEBUG Processing 25/650 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,847 DEBUG Processing 169/1136 atomic regions from SNP 50525 to 51125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,850 DEBUG Processing 221/899 atomic regions from SNP 66130 to 66730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,000 DEBUG Processing 230/858 atomic regions from SNP 68749 to 69349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,009 DEBUG Processing 186/477 atomic regions from SNP 55581 to 56181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,033 DEBUG Processing 187/1025 atomic regions from SNP 55870 to 56470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,073 DEBUG Processing 26/650 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,097 DEBUG Processing 222/899 atomic regions from SNP 66430 to 67030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,122 DEBUG Processing 170/1136 atomic regions from SNP 50825 to 51425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,241 DEBUG Processing 231/858 atomic regions from SNP 69049 to 69649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,255 DEBUG Processing 187/477 atomic regions from SNP 55881 to 56481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,304 DEBUG Processing 188/1025 atomic regions from SNP 56170 to 56770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,322 DEBUG Processing 27/650 atomic regions from SNP 7826 to 8426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,353 DEBUG Processing 223/899 atomic regions from SNP 66730 to 67330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,400 DEBUG Processing 171/1136 atomic regions from SNP 51125 to 51725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,477 DEBUG Processing 232/858 atomic regions from SNP 69349 to 69949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,480 DEBUG Processing 188/477 atomic regions from SNP 56181 to 56781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,566 DEBUG Processing 28/650 atomic regions from SNP 8126 to 8726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,575 DEBUG Processing 189/1025 atomic regions from SNP 56470 to 57070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,598 DEBUG Processing 224/899 atomic regions from SNP 67030 to 67630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,683 DEBUG Processing 172/1136 atomic regions from SNP 51425 to 52025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,706 DEBUG Processing 189/477 atomic regions from SNP 56481 to 57081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,714 DEBUG Processing 233/858 atomic regions from SNP 69649 to 70249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,808 DEBUG Processing 29/650 atomic regions from SNP 8426 to 9026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,840 DEBUG Processing 190/1025 atomic regions from SNP 56770 to 57370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,841 DEBUG Processing 225/899 atomic regions from SNP 67330 to 67930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,936 DEBUG Processing 190/477 atomic regions from SNP 56781 to 57381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:13,949 DEBUG Processing 234/858 atomic regions from SNP 69949 to 70549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,965 DEBUG Processing 173/1136 atomic regions from SNP 51725 to 52325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,054 DEBUG Processing 30/650 atomic regions from SNP 8726 to 9326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,085 DEBUG Processing 226/899 atomic regions from SNP 67630 to 68230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,123 DEBUG Processing 191/1025 atomic regions from SNP 57070 to 57670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,174 DEBUG Processing 191/477 atomic regions from SNP 57081 to 57681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,183 DEBUG Processing 235/858 atomic regions from SNP 70249 to 70849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,246 DEBUG Processing 174/1136 atomic regions from SNP 52025 to 52625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,299 DEBUG Processing 31/650 atomic regions from SNP 9026 to 9626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,336 DEBUG Processing 227/899 atomic regions from SNP 67930 to 68530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,412 DEBUG Processing 192/477 atomic regions from SNP 57381 to 57981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,414 DEBUG Processing 192/1025 atomic regions from SNP 57370 to 57970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,415 DEBUG Processing 236/858 atomic regions from SNP 70549 to 71149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,541 DEBUG Processing 175/1136 atomic regions from SNP 52325 to 52925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,546 DEBUG Processing 32/650 atomic regions from SNP 9326 to 9926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,588 DEBUG Processing 228/899 atomic regions from SNP 68230 to 68830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,647 DEBUG Processing 237/858 atomic regions from SNP 70849 to 71449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,653 DEBUG Processing 193/477 atomic regions from SNP 57681 to 58281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,690 DEBUG Processing 193/1025 atomic regions from SNP 57670 to 58270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,791 DEBUG Processing 33/650 atomic regions from SNP 9626 to 10226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,829 DEBUG Processing 176/1136 atomic regions from SNP 52625 to 53225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,840 DEBUG Processing 229/899 atomic regions from SNP 68530 to 69130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,885 DEBUG Processing 238/858 atomic regions from SNP 71149 to 71749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,889 DEBUG Processing 194/477 atomic regions from SNP 57981 to 58581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:14,967 DEBUG Processing 194/1025 atomic regions from SNP 57970 to 58570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,038 DEBUG Processing 34/650 atomic regions from SNP 9926 to 10526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,090 DEBUG Processing 230/899 atomic regions from SNP 68830 to 69430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,108 DEBUG Processing 177/1136 atomic regions from SNP 52925 to 53525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,124 DEBUG Processing 239/858 atomic regions from SNP 71449 to 72049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,137 DEBUG Processing 195/477 atomic regions from SNP 58281 to 58881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,252 DEBUG Processing 195/1025 atomic regions from SNP 58270 to 58870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,281 DEBUG Processing 35/650 atomic regions from SNP 10226 to 10826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,337 DEBUG Processing 231/899 atomic regions from SNP 69130 to 69730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,363 DEBUG Processing 240/858 atomic regions from SNP 71749 to 72349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,371 DEBUG Processing 196/477 atomic regions from SNP 58581 to 59181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,391 DEBUG Processing 178/1136 atomic regions from SNP 53225 to 53825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,531 DEBUG Processing 36/650 atomic regions from SNP 10526 to 11126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,543 DEBUG Processing 196/1025 atomic regions from SNP 58570 to 59170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,583 DEBUG Processing 232/899 atomic regions from SNP 69430 to 70030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,600 DEBUG Processing 197/477 atomic regions from SNP 58881 to 59481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,601 DEBUG Processing 241/858 atomic regions from SNP 72049 to 72649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,677 DEBUG Processing 179/1136 atomic regions from SNP 53525 to 54125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,780 DEBUG Processing 37/650 atomic regions from SNP 10826 to 11426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,828 DEBUG Processing 197/1025 atomic regions from SNP 58870 to 59470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,830 DEBUG Processing 198/477 atomic regions from SNP 59181 to 59781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:15,835 DEBUG Processing 233/899 atomic regions from SNP 69730 to 70330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,842 DEBUG Processing 242/858 atomic regions from SNP 72349 to 72949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,975 DEBUG Processing 180/1136 atomic regions from SNP 53825 to 54425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,030 DEBUG Processing 38/650 atomic regions from SNP 11126 to 11726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,065 DEBUG Processing 199/477 atomic regions from SNP 59481 to 60081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,090 DEBUG Processing 243/858 atomic regions from SNP 72649 to 73249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,092 DEBUG Processing 234/899 atomic regions from SNP 70030 to 70630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,102 DEBUG Processing 198/1025 atomic regions from SNP 59170 to 59770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,260 DEBUG Processing 181/1136 atomic regions from SNP 54125 to 54725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,275 DEBUG Processing 39/650 atomic regions from SNP 11426 to 12026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,304 DEBUG Processing 200/477 atomic regions from SNP 59781 to 60381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,347 DEBUG Processing 244/858 atomic regions from SNP 72949 to 73549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,357 DEBUG Processing 235/899 atomic regions from SNP 70330 to 70930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,381 DEBUG Processing 199/1025 atomic regions from SNP 59470 to 60070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,512 DEBUG Processing 40/650 atomic regions from SNP 11726 to 12326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,539 DEBUG Processing 201/477 atomic regions from SNP 60081 to 60681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,565 DEBUG Processing 182/1136 atomic regions from SNP 54425 to 55025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,601 DEBUG Processing 245/858 atomic regions from SNP 73249 to 73849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,617 DEBUG Processing 236/899 atomic regions from SNP 70630 to 71230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,650 DEBUG Processing 200/1025 atomic regions from SNP 59770 to 60370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,742 DEBUG Processing 41/650 atomic regions from SNP 12026 to 12626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,764 DEBUG Processing 202/477 atomic regions from SNP 60381 to 60981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:16,851 DEBUG Processing 246/858 atomic regions from SNP 73549 to 74149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,862 DEBUG Processing 183/1136 atomic regions from SNP 54725 to 55325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,872 DEBUG Processing 237/899 atomic regions from SNP 70930 to 71530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,918 DEBUG Processing 201/1025 atomic regions from SNP 60070 to 60670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,977 DEBUG Processing 42/650 atomic regions from SNP 12326 to 12926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,003 DEBUG Processing 203/477 atomic regions from SNP 60681 to 61281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,092 DEBUG Processing 247/858 atomic regions from SNP 73849 to 74449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,123 DEBUG Processing 238/899 atomic regions from SNP 71230 to 71830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,137 DEBUG Processing 184/1136 atomic regions from SNP 55025 to 55625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,184 DEBUG Processing 202/1025 atomic regions from SNP 60370 to 60970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,215 DEBUG Processing 43/650 atomic regions from SNP 12626 to 13226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,247 DEBUG Processing 204/477 atomic regions from SNP 60981 to 61581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,337 DEBUG Processing 248/858 atomic regions from SNP 74149 to 74749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,374 DEBUG Processing 239/899 atomic regions from SNP 71530 to 72130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,424 DEBUG Processing 185/1136 atomic regions from SNP 55325 to 55925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,449 DEBUG Processing 44/650 atomic regions from SNP 12926 to 13526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,453 DEBUG Processing 203/1025 atomic regions from SNP 60670 to 61270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,506 DEBUG Processing 205/477 atomic regions from SNP 61281 to 61881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,583 DEBUG Processing 249/858 atomic regions from SNP 74449 to 75049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,625 DEBUG Processing 240/899 atomic regions from SNP 71830 to 72430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,683 DEBUG Processing 45/650 atomic regions from SNP 13226 to 13826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,699 DEBUG Processing 186/1136 atomic regions from SNP 55625 to 56225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,717 DEBUG Processing 204/1025 atomic regions from SNP 60970 to 61570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,766 DEBUG Processing 206/477 atomic regions from SNP 61581 to 62181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:17,835 DEBUG Processing 250/858 atomic regions from SNP 74749 to 75349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,883 DEBUG Processing 241/899 atomic regions from SNP 72130 to 72730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,923 DEBUG Processing 46/650 atomic regions from SNP 13526 to 14126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,975 DEBUG Processing 187/1136 atomic regions from SNP 55925 to 56525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,981 DEBUG Processing 205/1025 atomic regions from SNP 61270 to 61870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,033 DEBUG Processing 207/477 atomic regions from SNP 61881 to 62481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,093 DEBUG Processing 251/858 atomic regions from SNP 75049 to 75649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,154 DEBUG Processing 242/899 atomic regions from SNP 72430 to 73030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,181 DEBUG Processing 47/650 atomic regions from SNP 13826 to 14426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,243 DEBUG Processing 206/1025 atomic regions from SNP 61570 to 62170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,251 DEBUG Processing 188/1136 atomic regions from SNP 56225 to 56825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,297 DEBUG Processing 208/477 atomic regions from SNP 62181 to 62781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,336 DEBUG Processing 252/858 atomic regions from SNP 75349 to 75949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,412 DEBUG Processing 243/899 atomic regions from SNP 72730 to 73330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,434 DEBUG Processing 48/650 atomic regions from SNP 14126 to 14726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,508 DEBUG Processing 207/1025 atomic regions from SNP 61870 to 62470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,546 DEBUG Processing 189/1136 atomic regions from SNP 56525 to 57125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,547 DEBUG Processing 209/477 atomic regions from SNP 62481 to 63081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,573 DEBUG Processing 253/858 atomic regions from SNP 75649 to 76249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,661 DEBUG Processing 244/899 atomic regions from SNP 73030 to 73630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,676 DEBUG Processing 49/650 atomic regions from SNP 14426 to 15026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,776 DEBUG Processing 208/1025 atomic regions from SNP 62170 to 62770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,812 DEBUG Processing 254/858 atomic regions from SNP 75949 to 76549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,819 DEBUG Processing 210/477 atomic regions from SNP 62781 to 63381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:18,860 DEBUG Processing 190/1136 atomic regions from SNP 56825 to 57425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,908 DEBUG Processing 245/899 atomic regions from SNP 73330 to 73930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,918 DEBUG Processing 50/650 atomic regions from SNP 14726 to 15326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,039 DEBUG Processing 209/1025 atomic regions from SNP 62470 to 63070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,053 DEBUG Processing 255/858 atomic regions from SNP 76249 to 76849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,076 DEBUG Processing 211/477 atomic regions from SNP 63081 to 63681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,153 DEBUG Processing 246/899 atomic regions from SNP 73630 to 74230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,155 DEBUG Processing 51/650 atomic regions from SNP 15026 to 15626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,162 DEBUG Processing 191/1136 atomic regions from SNP 57125 to 57725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,302 DEBUG Processing 256/858 atomic regions from SNP 76549 to 77149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,307 DEBUG Processing 212/477 atomic regions from SNP 63381 to 63981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,312 DEBUG Processing 210/1025 atomic regions from SNP 62770 to 63370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,401 DEBUG Processing 52/650 atomic regions from SNP 15326 to 15926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,402 DEBUG Processing 247/899 atomic regions from SNP 73930 to 74530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,471 DEBUG Processing 192/1136 atomic regions from SNP 57425 to 58025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,544 DEBUG Processing 257/858 atomic regions from SNP 76849 to 77449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,544 DEBUG Processing 213/477 atomic regions from SNP 63681 to 64281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,578 DEBUG Processing 211/1025 atomic regions from SNP 63070 to 63670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,645 DEBUG Processing 53/650 atomic regions from SNP 15626 to 16226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,651 DEBUG Processing 248/899 atomic regions from SNP 74230 to 74830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,783 DEBUG Processing 258/858 atomic regions from SNP 77149 to 77749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,784 DEBUG Processing 214/477 atomic regions from SNP 63981 to 64581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:19,785 DEBUG Processing 193/1136 atomic regions from SNP 57725 to 58325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,845 DEBUG Processing 212/1025 atomic regions from SNP 63370 to 63970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,888 DEBUG Processing 54/650 atomic regions from SNP 15926 to 16526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,900 DEBUG Processing 249/899 atomic regions from SNP 74530 to 75130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,022 DEBUG Processing 259/858 atomic regions from SNP 77449 to 78049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,026 DEBUG Processing 215/477 atomic regions from SNP 64281 to 64881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,090 DEBUG Processing 194/1136 atomic regions from SNP 58025 to 58625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,117 DEBUG Processing 213/1025 atomic regions from SNP 63670 to 64270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,131 DEBUG Processing 55/650 atomic regions from SNP 16226 to 16826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,145 DEBUG Processing 250/899 atomic regions from SNP 74830 to 75430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,256 DEBUG Processing 260/858 atomic regions from SNP 77749 to 78349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,260 DEBUG Processing 216/477 atomic regions from SNP 64581 to 65181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,375 DEBUG Processing 56/650 atomic regions from SNP 16526 to 17126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,390 DEBUG Processing 251/899 atomic regions from SNP 75130 to 75730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,395 DEBUG Processing 214/1025 atomic regions from SNP 63970 to 64570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,400 DEBUG Processing 195/1136 atomic regions from SNP 58325 to 58925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,492 DEBUG Processing 217/477 atomic regions from SNP 64881 to 65481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,493 DEBUG Processing 261/858 atomic regions from SNP 78049 to 78649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,620 DEBUG Processing 57/650 atomic regions from SNP 16826 to 17426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,638 DEBUG Processing 252/899 atomic regions from SNP 75430 to 76030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,672 DEBUG Processing 215/1025 atomic regions from SNP 64270 to 64870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,685 DEBUG Processing 196/1136 atomic regions from SNP 58625 to 59225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,723 DEBUG Processing 218/477 atomic regions from SNP 65181 to 65781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,728 DEBUG Processing 262/858 atomic regions from SNP 78349 to 78949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,866 DEBUG Processing 58/650 atomic regions from SNP 17126 to 17726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,885 DEBUG Processing 253/899 atomic regions from SNP 75730 to 76330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,942 DEBUG Processing 216/1025 atomic regions from SNP 64570 to 65170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,955 DEBUG Processing 219/477 atomic regions from SNP 65481 to 66081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:20,958 DEBUG Processing 263/858 atomic regions from SNP 78649 to 79249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,970 DEBUG Processing 197/1136 atomic regions from SNP 58925 to 59525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,122 DEBUG Processing 59/650 atomic regions from SNP 17426 to 18026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,140 DEBUG Processing 254/899 atomic regions from SNP 76030 to 76630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,191 DEBUG Processing 220/477 atomic regions from SNP 65781 to 66381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,192 DEBUG Processing 264/858 atomic regions from SNP 78949 to 79549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,236 DEBUG Processing 217/1025 atomic regions from SNP 64870 to 65470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,272 DEBUG Processing 198/1136 atomic regions from SNP 59225 to 59825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,381 DEBUG Processing 60/650 atomic regions from SNP 17726 to 18326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,400 DEBUG Processing 255/899 atomic regions from SNP 76330 to 76930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,428 DEBUG Processing 221/477 atomic regions from SNP 66081 to 66681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,430 DEBUG Processing 265/858 atomic regions from SNP 79249 to 79849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,508 DEBUG Processing 218/1025 atomic regions from SNP 65170 to 65770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,559 DEBUG Processing 199/1136 atomic regions from SNP 59525 to 60125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,633 DEBUG Processing 61/650 atomic regions from SNP 18026 to 18626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,657 DEBUG Processing 222/477 atomic regions from SNP 66381 to 66981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,657 DEBUG Processing 256/899 atomic regions from SNP 76630 to 77230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,673 DEBUG Processing 266/858 atomic regions from SNP 79549 to 80149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,777 DEBUG Processing 219/1025 atomic regions from SNP 65470 to 66070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,839 DEBUG Processing 200/1136 atomic regions from SNP 59825 to 60425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,877 DEBUG Processing 62/650 atomic regions from SNP 18326 to 18926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,886 DEBUG Processing 223/477 atomic regions from SNP 66681 to 67281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:21,910 DEBUG Processing 257/899 atomic regions from SNP 76930 to 77530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,920 DEBUG Processing 267/858 atomic regions from SNP 79849 to 80449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,042 DEBUG Processing 220/1025 atomic regions from SNP 65770 to 66370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,116 DEBUG Processing 63/650 atomic regions from SNP 18626 to 19226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,117 DEBUG Processing 224/477 atomic regions from SNP 66981 to 67581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,147 DEBUG Processing 201/1136 atomic regions from SNP 60125 to 60725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,157 DEBUG Processing 258/899 atomic regions from SNP 77230 to 77830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,166 DEBUG Processing 268/858 atomic regions from SNP 80149 to 80749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,307 DEBUG Processing 221/1025 atomic regions from SNP 66070 to 66670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,351 DEBUG Processing 225/477 atomic regions from SNP 67281 to 67881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,354 DEBUG Processing 64/650 atomic regions from SNP 18926 to 19526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,403 DEBUG Processing 259/899 atomic regions from SNP 77530 to 78130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,406 DEBUG Processing 269/858 atomic regions from SNP 80449 to 81049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,452 DEBUG Processing 202/1136 atomic regions from SNP 60425 to 61025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,572 DEBUG Processing 222/1025 atomic regions from SNP 66370 to 66970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,592 DEBUG Processing 65/650 atomic regions from SNP 19226 to 19826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,602 DEBUG Processing 226/477 atomic regions from SNP 67581 to 68181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,641 DEBUG Processing 270/858 atomic regions from SNP 80749 to 81349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,643 DEBUG Processing 260/899 atomic regions from SNP 77830 to 78430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,735 DEBUG Processing 203/1136 atomic regions from SNP 60725 to 61325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,834 DEBUG Processing 66/650 atomic regions from SNP 19526 to 20126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,835 DEBUG Processing 223/1025 atomic regions from SNP 66670 to 67270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,844 DEBUG Processing 227/477 atomic regions from SNP 67881 to 68481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:22,893 DEBUG Processing 271/858 atomic regions from SNP 81049 to 81649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,900 DEBUG Processing 261/899 atomic regions from SNP 78130 to 78730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,008 DEBUG Processing 204/1136 atomic regions from SNP 61025 to 61625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,082 DEBUG Processing 67/650 atomic regions from SNP 19826 to 20426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,084 DEBUG Processing 228/477 atomic regions from SNP 68181 to 68781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,101 DEBUG Processing 224/1025 atomic regions from SNP 66970 to 67570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,139 DEBUG Processing 272/858 atomic regions from SNP 81349 to 81949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,144 DEBUG Processing 262/899 atomic regions from SNP 78430 to 79030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,277 DEBUG Processing 205/1136 atomic regions from SNP 61325 to 61925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,311 DEBUG Processing 229/477 atomic regions from SNP 68481 to 69081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,325 DEBUG Processing 68/650 atomic regions from SNP 20126 to 20726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,368 DEBUG Processing 225/1025 atomic regions from SNP 67270 to 67870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,387 DEBUG Processing 273/858 atomic regions from SNP 81649 to 82249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,394 DEBUG Processing 263/899 atomic regions from SNP 78730 to 79330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,533 DEBUG Processing 230/477 atomic regions from SNP 68781 to 69381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,545 DEBUG Processing 206/1136 atomic regions from SNP 61625 to 62225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,557 DEBUG Processing 69/650 atomic regions from SNP 20426 to 21026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,628 DEBUG Processing 274/858 atomic regions from SNP 81949 to 82549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,634 DEBUG Processing 226/1025 atomic regions from SNP 67570 to 68170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,645 DEBUG Processing 264/899 atomic regions from SNP 79030 to 79630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,759 DEBUG Processing 231/477 atomic regions from SNP 69081 to 69681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:23,790 DEBUG Processing 70/650 atomic regions from SNP 20726 to 21326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,831 DEBUG Processing 207/1136 atomic regions from SNP 61925 to 62525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,865 DEBUG Processing 275/858 atomic regions from SNP 82249 to 82849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,897 DEBUG Processing 227/1025 atomic regions from SNP 67870 to 68470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,903 DEBUG Processing 265/899 atomic regions from SNP 79330 to 79930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,991 DEBUG Processing 232/477 atomic regions from SNP 69381 to 69981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,025 DEBUG Processing 71/650 atomic regions from SNP 21026 to 21626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,095 DEBUG Processing 276/858 atomic regions from SNP 82549 to 83149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,119 DEBUG Processing 208/1136 atomic regions from SNP 62225 to 62825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,158 DEBUG Processing 228/1025 atomic regions from SNP 68170 to 68770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,160 DEBUG Processing 266/899 atomic regions from SNP 79630 to 80230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,225 DEBUG Processing 233/477 atomic regions from SNP 69681 to 70281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,268 DEBUG Processing 72/650 atomic regions from SNP 21326 to 21926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,325 DEBUG Processing 277/858 atomic regions from SNP 82849 to 83449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,397 DEBUG Processing 209/1136 atomic regions from SNP 62525 to 63125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,422 DEBUG Processing 229/1025 atomic regions from SNP 68470 to 69070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,435 DEBUG Processing 267/899 atomic regions from SNP 79930 to 80530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,461 DEBUG Processing 234/477 atomic regions from SNP 69981 to 70581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,512 DEBUG Processing 73/650 atomic regions from SNP 21626 to 22226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,562 DEBUG Processing 278/858 atomic regions from SNP 83149 to 83749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,683 DEBUG Processing 210/1136 atomic regions from SNP 62825 to 63425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,687 DEBUG Processing 230/1025 atomic regions from SNP 68770 to 69370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,697 DEBUG Processing 235/477 atomic regions from SNP 70281 to 70881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,709 DEBUG Processing 268/899 atomic regions from SNP 80230 to 80830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,752 DEBUG Processing 74/650 atomic regions from SNP 21926 to 22526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,799 DEBUG Processing 279/858 atomic regions from SNP 83449 to 84049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,933 DEBUG Processing 236/477 atomic regions from SNP 70581 to 71181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:24,958 DEBUG Processing 231/1025 atomic regions from SNP 69070 to 69670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,983 DEBUG Processing 269/899 atomic regions from SNP 80530 to 81130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,987 DEBUG Processing 75/650 atomic regions from SNP 22226 to 22826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,987 DEBUG Processing 211/1136 atomic regions from SNP 63125 to 63725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,033 DEBUG Processing 280/858 atomic regions from SNP 83749 to 84349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,168 DEBUG Processing 237/477 atomic regions from SNP 70881 to 71481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,227 DEBUG Processing 232/1025 atomic regions from SNP 69370 to 69970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,229 DEBUG Processing 76/650 atomic regions from SNP 22526 to 23126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,259 DEBUG Processing 270/899 atomic regions from SNP 80830 to 81430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,270 DEBUG Processing 281/858 atomic regions from SNP 84049 to 84649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,287 DEBUG Processing 212/1136 atomic regions from SNP 63425 to 64025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,400 DEBUG Processing 238/477 atomic regions from SNP 71181 to 71781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,474 DEBUG Processing 77/650 atomic regions from SNP 22826 to 23426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,497 DEBUG Processing 233/1025 atomic regions from SNP 69670 to 70270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,511 DEBUG Processing 282/858 atomic regions from SNP 84349 to 84949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,522 DEBUG Processing 271/899 atomic regions from SNP 81130 to 81730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,563 DEBUG Processing 213/1136 atomic regions from SNP 63725 to 64325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,632 DEBUG Processing 239/477 atomic regions from SNP 71481 to 72081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,719 DEBUG Processing 78/650 atomic regions from SNP 23126 to 23726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,756 DEBUG Processing 283/858 atomic regions from SNP 84649 to 85249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,760 DEBUG Processing 234/1025 atomic regions from SNP 69970 to 70570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,782 DEBUG Processing 272/899 atomic regions from SNP 81430 to 82030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,840 DEBUG Processing 214/1136 atomic regions from SNP 64025 to 64625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,861 DEBUG Processing 240/477 atomic regions from SNP 71781 to 72381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:25,962 DEBUG Processing 79/650 atomic regions from SNP 23426 to 24026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,013 DEBUG Processing 284/858 atomic regions from SNP 84949 to 85549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,023 DEBUG Processing 235/1025 atomic regions from SNP 70270 to 70870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,047 DEBUG Processing 273/899 atomic regions from SNP 81730 to 82330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,095 DEBUG Processing 241/477 atomic regions from SNP 72081 to 72681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,121 DEBUG Processing 215/1136 atomic regions from SNP 64325 to 64925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,200 DEBUG Processing 80/650 atomic regions from SNP 23726 to 24326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,257 DEBUG Processing 285/858 atomic regions from SNP 85249 to 85849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,287 DEBUG Processing 236/1025 atomic regions from SNP 70570 to 71170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,299 DEBUG Processing 274/899 atomic regions from SNP 82030 to 82630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,327 DEBUG Processing 242/477 atomic regions from SNP 72381 to 72981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,398 DEBUG Processing 216/1136 atomic regions from SNP 64625 to 65225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,437 DEBUG Processing 81/650 atomic regions from SNP 24026 to 24626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,502 DEBUG Processing 286/858 atomic regions from SNP 85549 to 86149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,551 DEBUG Processing 237/1025 atomic regions from SNP 70870 to 71470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,555 DEBUG Processing 275/899 atomic regions from SNP 82330 to 82930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,563 DEBUG Processing 243/477 atomic regions from SNP 72681 to 73281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,670 DEBUG Processing 82/650 atomic regions from SNP 24326 to 24926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,675 DEBUG Processing 217/1136 atomic regions from SNP 64925 to 65525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,739 DEBUG Processing 287/858 atomic regions from SNP 85849 to 86449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,796 DEBUG Processing 244/477 atomic regions from SNP 72981 to 73581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:26,807 DEBUG Processing 276/899 atomic regions from SNP 82630 to 83230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,818 DEBUG Processing 238/1025 atomic regions from SNP 71170 to 71770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,909 DEBUG Processing 83/650 atomic regions from SNP 24626 to 25226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,950 DEBUG Processing 218/1136 atomic regions from SNP 65225 to 65825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,972 DEBUG Processing 288/858 atomic regions from SNP 86149 to 86749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,039 DEBUG Processing 245/477 atomic regions from SNP 73281 to 73881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,053 DEBUG Processing 277/899 atomic regions from SNP 82930 to 83530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,091 DEBUG Processing 239/1025 atomic regions from SNP 71470 to 72070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,153 DEBUG Processing 84/650 atomic regions from SNP 24926 to 25526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,211 DEBUG Processing 289/858 atomic regions from SNP 86449 to 87049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,221 DEBUG Processing 219/1136 atomic regions from SNP 65525 to 66125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,268 DEBUG Processing 246/477 atomic regions from SNP 73581 to 74181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,293 DEBUG Processing 278/899 atomic regions from SNP 83230 to 83830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,360 DEBUG Processing 240/1025 atomic regions from SNP 71770 to 72370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,400 DEBUG Processing 85/650 atomic regions from SNP 25226 to 25826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,460 DEBUG Processing 290/858 atomic regions from SNP 86749 to 87349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,495 DEBUG Processing 220/1136 atomic regions from SNP 65825 to 66425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,497 DEBUG Processing 247/477 atomic regions from SNP 73881 to 74481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,534 DEBUG Processing 279/899 atomic regions from SNP 83530 to 84130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,627 DEBUG Processing 241/1025 atomic regions from SNP 72070 to 72670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,648 DEBUG Processing 86/650 atomic regions from SNP 25526 to 26126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,707 DEBUG Processing 291/858 atomic regions from SNP 87049 to 87649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,726 DEBUG Processing 248/477 atomic regions from SNP 74181 to 74781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,770 DEBUG Processing 221/1136 atomic regions from SNP 66125 to 66725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,779 DEBUG Processing 280/899 atomic regions from SNP 83830 to 84430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,890 DEBUG Processing 87/650 atomic regions from SNP 25826 to 26426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,891 DEBUG Processing 242/1025 atomic regions from SNP 72370 to 72970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,959 DEBUG Processing 292/858 atomic regions from SNP 87349 to 87949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,961 DEBUG Processing 249/477 atomic regions from SNP 74481 to 75081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,034 DEBUG Processing 281/899 atomic regions from SNP 84130 to 84730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,049 DEBUG Processing 222/1136 atomic regions from SNP 66425 to 67025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,129 DEBUG Processing 88/650 atomic regions from SNP 26126 to 26726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,155 DEBUG Processing 243/1025 atomic regions from SNP 72670 to 73270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,194 DEBUG Processing 250/477 atomic regions from SNP 74781 to 75381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,217 DEBUG Processing 293/858 atomic regions from SNP 87649 to 88249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,293 DEBUG Processing 282/899 atomic regions from SNP 84430 to 85030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,330 DEBUG Processing 223/1136 atomic regions from SNP 66725 to 67325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,362 DEBUG Processing 89/650 atomic regions from SNP 26426 to 27026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,415 DEBUG Processing 244/1025 atomic regions from SNP 72970 to 73570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,424 DEBUG Processing 251/477 atomic regions from SNP 75081 to 75681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,462 DEBUG Processing 294/858 atomic regions from SNP 87949 to 88549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,549 DEBUG Processing 283/899 atomic regions from SNP 84730 to 85330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,599 DEBUG Processing 90/650 atomic regions from SNP 26726 to 27326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,609 DEBUG Processing 224/1136 atomic regions from SNP 67025 to 67625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,652 DEBUG Processing 252/477 atomic regions from SNP 75381 to 75981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,679 DEBUG Processing 245/1025 atomic regions from SNP 73270 to 73870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,703 DEBUG Processing 295/858 atomic regions from SNP 88249 to 88849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,806 DEBUG Processing 284/899 atomic regions from SNP 85030 to 85630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,855 DEBUG Processing 91/650 atomic regions from SNP 27026 to 27626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,883 DEBUG Processing 253/477 atomic regions from SNP 75681 to 76281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,887 DEBUG Processing 225/1136 atomic regions from SNP 67325 to 67925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,946 DEBUG Processing 246/1025 atomic regions from SNP 73570 to 74170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,948 DEBUG Processing 296/858 atomic regions from SNP 88549 to 89149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,059 DEBUG Processing 285/899 atomic regions from SNP 85330 to 85930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,099 DEBUG Processing 92/650 atomic regions from SNP 27326 to 27926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,112 DEBUG Processing 254/477 atomic regions from SNP 75981 to 76581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,164 DEBUG Processing 226/1136 atomic regions from SNP 67625 to 68225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,190 DEBUG Processing 297/858 atomic regions from SNP 88849 to 89449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,213 DEBUG Processing 247/1025 atomic regions from SNP 73870 to 74470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,308 DEBUG Processing 286/899 atomic regions from SNP 85630 to 86230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,342 DEBUG Processing 93/650 atomic regions from SNP 27626 to 28226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,343 DEBUG Processing 255/477 atomic regions from SNP 76281 to 76881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,433 DEBUG Processing 298/858 atomic regions from SNP 89149 to 89749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,441 DEBUG Processing 227/1136 atomic regions from SNP 67925 to 68525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,479 DEBUG Processing 248/1025 atomic regions from SNP 74170 to 74770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,565 DEBUG Processing 287/899 atomic regions from SNP 85930 to 86530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,576 DEBUG Processing 256/477 atomic regions from SNP 76581 to 77181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,583 DEBUG Processing 94/650 atomic regions from SNP 27926 to 28526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,666 DEBUG Processing 299/858 atomic regions from SNP 89449 to 90049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,716 DEBUG Processing 228/1136 atomic regions from SNP 68225 to 68825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,749 DEBUG Processing 249/1025 atomic regions from SNP 74470 to 75070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,822 DEBUG Processing 257/477 atomic regions from SNP 76881 to 77481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,830 DEBUG Processing 288/899 atomic regions from SNP 86230 to 86830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,838 DEBUG Processing 95/650 atomic regions from SNP 28226 to 28826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,907 DEBUG Processing 300/858 atomic regions from SNP 89749 to 90349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,995 DEBUG Processing 229/1136 atomic regions from SNP 68525 to 69125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,019 DEBUG Processing 250/1025 atomic regions from SNP 74770 to 75370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,057 DEBUG Processing 258/477 atomic regions from SNP 77181 to 77781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,096 DEBUG Processing 96/650 atomic regions from SNP 28526 to 29126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,100 DEBUG Processing 289/899 atomic regions from SNP 86530 to 87130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,152 DEBUG Processing 301/858 atomic regions from SNP 90049 to 90649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,273 DEBUG Processing 230/1136 atomic regions from SNP 68825 to 69425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,287 DEBUG Processing 251/1025 atomic regions from SNP 75070 to 75670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,290 DEBUG Processing 259/477 atomic regions from SNP 77481 to 78081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,345 DEBUG Processing 97/650 atomic regions from SNP 28826 to 29426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,357 DEBUG Processing 290/899 atomic regions from SNP 86830 to 87430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,399 DEBUG Processing 302/858 atomic regions from SNP 90349 to 90949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,527 DEBUG Processing 260/477 atomic regions from SNP 77781 to 78381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,555 DEBUG Processing 231/1136 atomic regions from SNP 69125 to 69725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,559 DEBUG Processing 252/1025 atomic regions from SNP 75370 to 75970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,607 DEBUG Processing 291/899 atomic regions from SNP 87130 to 87730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,609 DEBUG Processing 98/650 atomic regions from SNP 29126 to 29726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,642 DEBUG Processing 303/858 atomic regions from SNP 90649 to 91249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,758 DEBUG Processing 261/477 atomic regions from SNP 78081 to 78681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,826 DEBUG Processing 253/1025 atomic regions from SNP 75670 to 76270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,837 DEBUG Processing 232/1136 atomic regions from SNP 69425 to 70025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,860 DEBUG Processing 292/899 atomic regions from SNP 87430 to 88030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,868 DEBUG Processing 99/650 atomic regions from SNP 29426 to 30026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,891 DEBUG Processing 304/858 atomic regions from SNP 90949 to 91549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,992 DEBUG Processing 262/477 atomic regions from SNP 78381 to 78981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,093 DEBUG Processing 254/1025 atomic regions from SNP 75970 to 76570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,119 DEBUG Processing 293/899 atomic regions from SNP 87730 to 88330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,131 DEBUG Processing 233/1136 atomic regions from SNP 69725 to 70325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,131 DEBUG Processing 100/650 atomic regions from SNP 29726 to 30326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,139 DEBUG Processing 305/858 atomic regions from SNP 91249 to 91849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,216 DEBUG Processing 263/477 atomic regions from SNP 78681 to 79281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,370 DEBUG Processing 255/1025 atomic regions from SNP 76270 to 76870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,411 DEBUG Processing 294/899 atomic regions from SNP 88030 to 88630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,429 DEBUG Processing 306/858 atomic regions from SNP 91549 to 92149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,437 DEBUG Processing 101/650 atomic regions from SNP 30026 to 30626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,469 DEBUG Processing 234/1136 atomic regions from SNP 70025 to 70625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,475 DEBUG Processing 264/477 atomic regions from SNP 78981 to 79581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,628 DEBUG Processing 256/1025 atomic regions from SNP 76570 to 77170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,698 DEBUG Processing 295/899 atomic regions from SNP 88330 to 88930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,709 DEBUG Processing 307/858 atomic regions from SNP 91849 to 92449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,729 DEBUG Processing 102/650 atomic regions from SNP 30326 to 30926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,755 DEBUG Processing 265/477 atomic regions from SNP 79281 to 79881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,791 DEBUG Processing 235/1136 atomic regions from SNP 70325 to 70925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,887 DEBUG Processing 257/1025 atomic regions from SNP 76870 to 77470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,945 DEBUG Processing 296/899 atomic regions from SNP 88630 to 89230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,954 DEBUG Processing 308/858 atomic regions from SNP 92149 to 92749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,987 DEBUG Processing 103/650 atomic regions from SNP 30626 to 31226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,992 DEBUG Processing 266/477 atomic regions from SNP 79581 to 80181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,091 DEBUG Processing 236/1136 atomic regions from SNP 70625 to 71225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,170 DEBUG Processing 258/1025 atomic regions from SNP 77170 to 77770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,201 DEBUG Processing 297/899 atomic regions from SNP 88930 to 89530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,203 DEBUG Processing 309/858 atomic regions from SNP 92449 to 93049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,222 DEBUG Processing 267/477 atomic regions from SNP 79881 to 80481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,245 DEBUG Processing 104/650 atomic regions from SNP 30926 to 31526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,371 DEBUG Processing 237/1136 atomic regions from SNP 70925 to 71525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,445 DEBUG Processing 259/1025 atomic regions from SNP 77470 to 78070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,452 DEBUG Processing 310/858 atomic regions from SNP 92749 to 93349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,456 DEBUG Processing 298/899 atomic regions from SNP 89230 to 89830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,456 DEBUG Processing 268/477 atomic regions from SNP 80181 to 80781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,497 DEBUG Processing 105/650 atomic regions from SNP 31226 to 31826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,648 DEBUG Processing 238/1136 atomic regions from SNP 71225 to 71825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,692 DEBUG Processing 269/477 atomic regions from SNP 80481 to 81081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,699 DEBUG Processing 311/858 atomic regions from SNP 93049 to 93649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,708 DEBUG Processing 299/899 atomic regions from SNP 89530 to 90130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,711 DEBUG Processing 260/1025 atomic regions from SNP 77770 to 78370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,748 DEBUG Processing 106/650 atomic regions from SNP 31526 to 32126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,922 DEBUG Processing 239/1136 atomic regions from SNP 71525 to 72125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,926 DEBUG Processing 270/477 atomic regions from SNP 80781 to 81381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,943 DEBUG Processing 312/858 atomic regions from SNP 93349 to 93949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,962 DEBUG Processing 300/899 atomic regions from SNP 89830 to 90430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,979 DEBUG Processing 261/1025 atomic regions from SNP 78070 to 78670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,997 DEBUG Processing 107/650 atomic regions from SNP 31826 to 32426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,156 DEBUG Processing 271/477 atomic regions from SNP 81081 to 81681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,190 DEBUG Processing 313/858 atomic regions from SNP 93649 to 94249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,214 DEBUG Processing 301/899 atomic regions from SNP 90130 to 90730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,229 DEBUG Processing 240/1136 atomic regions from SNP 71825 to 72425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,244 DEBUG Processing 108/650 atomic regions from SNP 32126 to 32726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,250 DEBUG Processing 262/1025 atomic regions from SNP 78370 to 78970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,386 DEBUG Processing 272/477 atomic regions from SNP 81381 to 81981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,438 DEBUG Processing 314/858 atomic regions from SNP 93949 to 94549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,470 DEBUG Processing 302/899 atomic regions from SNP 90430 to 91030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,518 DEBUG Processing 109/650 atomic regions from SNP 32426 to 33026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,520 DEBUG Processing 241/1136 atomic regions from SNP 72125 to 72725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,528 DEBUG Processing 263/1025 atomic regions from SNP 78670 to 79270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,620 DEBUG Processing 273/477 atomic regions from SNP 81681 to 82281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,683 DEBUG Processing 315/858 atomic regions from SNP 94249 to 94849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,728 DEBUG Processing 303/899 atomic regions from SNP 90730 to 91330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,822 DEBUG Processing 110/650 atomic regions from SNP 32726 to 33326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,849 DEBUG Processing 264/1025 atomic regions from SNP 78970 to 79570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,856 DEBUG Processing 242/1136 atomic regions from SNP 72425 to 73025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,883 DEBUG Processing 274/477 atomic regions from SNP 81981 to 82581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,938 DEBUG Processing 316/858 atomic regions from SNP 94549 to 95149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,973 DEBUG Processing 304/899 atomic regions from SNP 91030 to 91630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,065 DEBUG Processing 111/650 atomic regions from SNP 33026 to 33626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,140 DEBUG Processing 265/1025 atomic regions from SNP 79270 to 79870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,155 DEBUG Processing 275/477 atomic regions from SNP 82281 to 82881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,162 DEBUG Processing 243/1136 atomic regions from SNP 72725 to 73325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,222 DEBUG Processing 317/858 atomic regions from SNP 94849 to 95449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,250 DEBUG Processing 305/899 atomic regions from SNP 91330 to 91930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,314 DEBUG Processing 112/650 atomic regions from SNP 33326 to 33926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,391 DEBUG Processing 276/477 atomic regions from SNP 82581 to 83181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,404 DEBUG Processing 266/1025 atomic regions from SNP 79570 to 80170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,444 DEBUG Processing 244/1136 atomic regions from SNP 73025 to 73625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,473 DEBUG Processing 318/858 atomic regions from SNP 95149 to 95749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,508 DEBUG Processing 306/899 atomic regions from SNP 91630 to 92230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,569 DEBUG Processing 113/650 atomic regions from SNP 33626 to 34226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,621 DEBUG Processing 277/477 atomic regions from SNP 82881 to 83481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,667 DEBUG Processing 267/1025 atomic regions from SNP 79870 to 80470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,712 DEBUG Processing 319/858 atomic regions from SNP 95449 to 96049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,721 DEBUG Processing 245/1136 atomic regions from SNP 73325 to 73925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,758 DEBUG Processing 307/899 atomic regions from SNP 91930 to 92530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,826 DEBUG Processing 114/650 atomic regions from SNP 33926 to 34526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,851 DEBUG Processing 278/477 atomic regions from SNP 83181 to 83781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,926 DEBUG Processing 268/1025 atomic regions from SNP 80170 to 80770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,947 DEBUG Processing 320/858 atomic regions from SNP 95749 to 96349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,991 DEBUG Processing 246/1136 atomic regions from SNP 73625 to 74225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,001 DEBUG Processing 308/899 atomic regions from SNP 92230 to 92830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,093 DEBUG Processing 115/650 atomic regions from SNP 34226 to 34826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,113 DEBUG Processing 279/477 atomic regions from SNP 83481 to 84081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,198 DEBUG Processing 321/858 atomic regions from SNP 96049 to 96649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,199 DEBUG Processing 269/1025 atomic regions from SNP 80470 to 81070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,243 DEBUG Processing 309/899 atomic regions from SNP 92530 to 93130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,257 DEBUG Processing 247/1136 atomic regions from SNP 73925 to 74525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,335 DEBUG Processing 116/650 atomic regions from SNP 34526 to 35126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,349 DEBUG Processing 280/477 atomic regions from SNP 83781 to 84381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,458 DEBUG Processing 322/858 atomic regions from SNP 96349 to 96949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,464 DEBUG Processing 270/1025 atomic regions from SNP 80770 to 81370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,498 DEBUG Processing 310/899 atomic regions from SNP 92830 to 93430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,530 DEBUG Processing 248/1136 atomic regions from SNP 74225 to 74825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,579 DEBUG Processing 117/650 atomic regions from SNP 34826 to 35426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,585 DEBUG Processing 281/477 atomic regions from SNP 84081 to 84681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,704 DEBUG Processing 323/858 atomic regions from SNP 96649 to 97249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,721 DEBUG Processing 271/1025 atomic regions from SNP 81070 to 81670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,747 DEBUG Processing 311/899 atomic regions from SNP 93130 to 93730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,805 DEBUG Processing 249/1136 atomic regions from SNP 74525 to 75125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,820 DEBUG Processing 282/477 atomic regions from SNP 84381 to 84981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,825 DEBUG Processing 118/650 atomic regions from SNP 35126 to 35726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,952 DEBUG Processing 324/858 atomic regions from SNP 96949 to 97549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,978 DEBUG Processing 272/1025 atomic regions from SNP 81370 to 81970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,002 DEBUG Processing 312/899 atomic regions from SNP 93430 to 94030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,070 DEBUG Processing 283/477 atomic regions from SNP 84681 to 85281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,086 DEBUG Processing 119/650 atomic regions from SNP 35426 to 36026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,094 DEBUG Processing 250/1136 atomic regions from SNP 74825 to 75425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,227 DEBUG Processing 325/858 atomic regions from SNP 97249 to 97849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,268 DEBUG Processing 273/1025 atomic regions from SNP 81670 to 82270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,280 DEBUG Processing 313/899 atomic regions from SNP 93730 to 94330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,318 DEBUG Processing 284/477 atomic regions from SNP 84981 to 85581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,338 DEBUG Processing 120/650 atomic regions from SNP 35726 to 36326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,383 DEBUG Processing 251/1136 atomic regions from SNP 75125 to 75725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,467 DEBUG Processing 326/858 atomic regions from SNP 97549 to 98149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,536 DEBUG Processing 274/1025 atomic regions from SNP 81970 to 82570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,548 DEBUG Processing 314/899 atomic regions from SNP 94030 to 94630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,558 DEBUG Processing 285/477 atomic regions from SNP 85281 to 85881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,631 DEBUG Processing 121/650 atomic regions from SNP 36026 to 36626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,710 DEBUG Processing 252/1136 atomic regions from SNP 75425 to 76025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,730 DEBUG Processing 327/858 atomic regions from SNP 97849 to 98449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,830 DEBUG Processing 286/477 atomic regions from SNP 85581 to 86181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,833 DEBUG Processing 275/1025 atomic regions from SNP 82270 to 82870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,837 DEBUG Processing 315/899 atomic regions from SNP 94330 to 94930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,898 DEBUG Processing 122/650 atomic regions from SNP 36326 to 36926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,994 DEBUG Processing 328/858 atomic regions from SNP 98149 to 98749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,001 DEBUG Processing 253/1136 atomic regions from SNP 75725 to 76325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,068 DEBUG Processing 287/477 atomic regions from SNP 85881 to 86481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,094 DEBUG Processing 316/899 atomic regions from SNP 94630 to 95230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,106 DEBUG Processing 276/1025 atomic regions from SNP 82570 to 83170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,148 DEBUG Processing 123/650 atomic regions from SNP 36626 to 37226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,264 DEBUG Processing 329/858 atomic regions from SNP 98449 to 99049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,295 DEBUG Processing 254/1136 atomic regions from SNP 76025 to 76625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,308 DEBUG Processing 288/477 atomic regions from SNP 86181 to 86781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,373 DEBUG Processing 317/899 atomic regions from SNP 94930 to 95530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,393 DEBUG Processing 277/1025 atomic regions from SNP 82870 to 83470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,412 DEBUG Processing 124/650 atomic regions from SNP 36926 to 37526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,528 DEBUG Processing 330/858 atomic regions from SNP 98749 to 99349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,557 DEBUG Processing 289/477 atomic regions from SNP 86481 to 87081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,598 DEBUG Processing 255/1136 atomic regions from SNP 76325 to 76925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,636 DEBUG Processing 318/899 atomic regions from SNP 95230 to 95830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,657 DEBUG Processing 278/1025 atomic regions from SNP 83170 to 83770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,666 DEBUG Processing 125/650 atomic regions from SNP 37226 to 37826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,765 DEBUG Processing 331/858 atomic regions from SNP 99049 to 99649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,791 DEBUG Processing 290/477 atomic regions from SNP 86781 to 87381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,872 DEBUG Processing 256/1136 atomic regions from SNP 76625 to 77225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,892 DEBUG Processing 319/899 atomic regions from SNP 95530 to 96130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,914 DEBUG Processing 126/650 atomic regions from SNP 37526 to 38126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,916 DEBUG Processing 279/1025 atomic regions from SNP 83470 to 84070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,006 DEBUG Processing 332/858 atomic regions from SNP 99349 to 99949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,024 DEBUG Processing 291/477 atomic regions from SNP 87081 to 87681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,140 DEBUG Processing 320/899 atomic regions from SNP 95830 to 96430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,143 DEBUG Processing 257/1136 atomic regions from SNP 76925 to 77525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,160 DEBUG Processing 127/650 atomic regions from SNP 37826 to 38426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,173 DEBUG Processing 280/1025 atomic regions from SNP 83770 to 84370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,258 DEBUG Processing 292/477 atomic regions from SNP 87381 to 87981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,259 DEBUG Processing 333/858 atomic regions from SNP 99649 to 100249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,393 DEBUG Processing 321/899 atomic regions from SNP 96130 to 96730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,407 DEBUG Processing 128/650 atomic regions from SNP 38126 to 38726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,413 DEBUG Processing 258/1136 atomic regions from SNP 77225 to 77825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,433 DEBUG Processing 281/1025 atomic regions from SNP 84070 to 84670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,487 DEBUG Processing 293/477 atomic regions from SNP 87681 to 88281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,505 DEBUG Processing 334/858 atomic regions from SNP 99949 to 100549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,639 DEBUG Processing 322/899 atomic regions from SNP 96430 to 97030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,652 DEBUG Processing 129/650 atomic regions from SNP 38426 to 39026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,687 DEBUG Processing 259/1136 atomic regions from SNP 77525 to 78125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,696 DEBUG Processing 282/1025 atomic regions from SNP 84370 to 84970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,713 DEBUG Processing 294/477 atomic regions from SNP 87981 to 88581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,745 DEBUG Processing 335/858 atomic regions from SNP 100249 to 100849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,890 DEBUG Processing 323/899 atomic regions from SNP 96730 to 97330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,898 DEBUG Processing 130/650 atomic regions from SNP 38726 to 39326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,942 DEBUG Processing 295/477 atomic regions from SNP 88281 to 88881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,959 DEBUG Processing 283/1025 atomic regions from SNP 84670 to 85270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,962 DEBUG Processing 260/1136 atomic regions from SNP 77825 to 78425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,987 DEBUG Processing 336/858 atomic regions from SNP 100549 to 101149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,139 DEBUG Processing 324/899 atomic regions from SNP 97030 to 97630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,142 DEBUG Processing 131/650 atomic regions from SNP 39026 to 39626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,173 DEBUG Processing 296/477 atomic regions from SNP 88581 to 89181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,230 DEBUG Processing 337/858 atomic regions from SNP 100849 to 101449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,235 DEBUG Processing 284/1025 atomic regions from SNP 84970 to 85570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,236 DEBUG Processing 261/1136 atomic regions from SNP 78125 to 78725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,389 DEBUG Processing 325/899 atomic regions from SNP 97330 to 97930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,404 DEBUG Processing 132/650 atomic regions from SNP 39326 to 39926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,407 DEBUG Processing 297/477 atomic regions from SNP 88881 to 89481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,481 DEBUG Processing 338/858 atomic regions from SNP 101149 to 101749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,501 DEBUG Processing 285/1025 atomic regions from SNP 85270 to 85870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,514 DEBUG Processing 262/1136 atomic regions from SNP 78425 to 79025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,640 DEBUG Processing 298/477 atomic regions from SNP 89181 to 89781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,642 DEBUG Processing 326/899 atomic regions from SNP 97630 to 98230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,653 DEBUG Processing 133/650 atomic regions from SNP 39626 to 40226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,728 DEBUG Processing 339/858 atomic regions from SNP 101449 to 102049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,762 DEBUG Processing 286/1025 atomic regions from SNP 85570 to 86170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,785 DEBUG Processing 263/1136 atomic regions from SNP 78725 to 79325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,870 DEBUG Processing 299/477 atomic regions from SNP 89481 to 90081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,892 DEBUG Processing 327/899 atomic regions from SNP 97930 to 98530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,896 DEBUG Processing 134/650 atomic regions from SNP 39926 to 40526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,974 DEBUG Processing 340/858 atomic regions from SNP 101749 to 102349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,025 DEBUG Processing 287/1025 atomic regions from SNP 85870 to 86470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,057 DEBUG Processing 264/1136 atomic regions from SNP 79025 to 79625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,100 DEBUG Processing 300/477 atomic regions from SNP 89781 to 90381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,145 DEBUG Processing 135/650 atomic regions from SNP 40226 to 40826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,145 DEBUG Processing 328/899 atomic regions from SNP 98230 to 98830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,221 DEBUG Processing 341/858 atomic regions from SNP 102049 to 102649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,290 DEBUG Processing 288/1025 atomic regions from SNP 86170 to 86770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,332 DEBUG Processing 301/477 atomic regions from SNP 90081 to 90681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,337 DEBUG Processing 265/1136 atomic regions from SNP 79325 to 79925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,406 DEBUG Processing 136/650 atomic regions from SNP 40526 to 41126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,413 DEBUG Processing 329/899 atomic regions from SNP 98530 to 99130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,478 DEBUG Processing 342/858 atomic regions from SNP 102349 to 102949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,552 DEBUG Processing 289/1025 atomic regions from SNP 86470 to 87070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,562 DEBUG Processing 302/477 atomic regions from SNP 90381 to 90981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,610 DEBUG Processing 266/1136 atomic regions from SNP 79625 to 80225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,658 DEBUG Processing 137/650 atomic regions from SNP 40826 to 41426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,679 DEBUG Processing 330/899 atomic regions from SNP 98830 to 99430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,734 DEBUG Processing 343/858 atomic regions from SNP 102649 to 103249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,792 DEBUG Processing 303/477 atomic regions from SNP 90681 to 91281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,818 DEBUG Processing 290/1025 atomic regions from SNP 86770 to 87370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,883 DEBUG Processing 267/1136 atomic regions from SNP 79925 to 80525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,899 DEBUG Processing 138/650 atomic regions from SNP 41126 to 41726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,928 DEBUG Processing 331/899 atomic regions from SNP 99130 to 99730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,990 DEBUG Processing 344/858 atomic regions from SNP 102949 to 103549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,029 DEBUG Processing 304/477 atomic regions from SNP 90981 to 91581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,086 DEBUG Processing 291/1025 atomic regions from SNP 87070 to 87670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,135 DEBUG Processing 139/650 atomic regions from SNP 41426 to 42026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,158 DEBUG Processing 268/1136 atomic regions from SNP 80225 to 80825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,177 DEBUG Processing 332/899 atomic regions from SNP 99430 to 100030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,255 DEBUG Processing 345/858 atomic regions from SNP 103249 to 103849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,279 DEBUG Processing 305/477 atomic regions from SNP 91281 to 91881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,362 DEBUG Processing 292/1025 atomic regions from SNP 87370 to 87970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,375 DEBUG Processing 140/650 atomic regions from SNP 41726 to 42326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,415 DEBUG Processing 333/899 atomic regions from SNP 99730 to 100330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,431 DEBUG Processing 269/1136 atomic regions from SNP 80525 to 81125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,501 DEBUG Processing 346/858 atomic regions from SNP 103549 to 104149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,546 DEBUG Processing 306/477 atomic regions from SNP 91581 to 92181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,630 DEBUG Processing 141/650 atomic regions from SNP 42026 to 42626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,631 DEBUG Processing 293/1025 atomic regions from SNP 87670 to 88270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,658 DEBUG Processing 334/899 atomic regions from SNP 100030 to 100630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,707 DEBUG Processing 270/1136 atomic regions from SNP 80825 to 81425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,744 DEBUG Processing 347/858 atomic regions from SNP 103849 to 104449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,773 DEBUG Processing 307/477 atomic regions from SNP 91881 to 92481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,889 DEBUG Processing 142/650 atomic regions from SNP 42326 to 42926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,904 DEBUG Processing 294/1025 atomic regions from SNP 87970 to 88570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,915 DEBUG Processing 335/899 atomic regions from SNP 100330 to 100930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,980 DEBUG Processing 348/858 atomic regions from SNP 104149 to 104749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,987 DEBUG Processing 271/1136 atomic regions from SNP 81125 to 81725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,999 DEBUG Processing 308/477 atomic regions from SNP 92181 to 92781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,146 DEBUG Processing 143/650 atomic regions from SNP 42626 to 43226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,172 DEBUG Processing 336/899 atomic regions from SNP 100630 to 101230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,174 DEBUG Processing 295/1025 atomic regions from SNP 88270 to 88870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,220 DEBUG Processing 349/858 atomic regions from SNP 104449 to 105049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,232 DEBUG Processing 309/477 atomic regions from SNP 92481 to 93081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,273 DEBUG Processing 272/1136 atomic regions from SNP 81425 to 82025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,400 DEBUG Processing 144/650 atomic regions from SNP 42926 to 43526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,434 DEBUG Processing 337/899 atomic regions from SNP 100930 to 101530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,446 DEBUG Processing 296/1025 atomic regions from SNP 88570 to 89170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,466 DEBUG Processing 350/858 atomic regions from SNP 104749 to 105349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,471 DEBUG Processing 310/477 atomic regions from SNP 92781 to 93381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,548 DEBUG Processing 273/1136 atomic regions from SNP 81725 to 82325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,646 DEBUG Processing 145/650 atomic regions from SNP 43226 to 43826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,693 DEBUG Processing 338/899 atomic regions from SNP 101230 to 101830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,709 DEBUG Processing 311/477 atomic regions from SNP 93081 to 93681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,718 DEBUG Processing 297/1025 atomic regions from SNP 88870 to 89470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,725 DEBUG Processing 351/858 atomic regions from SNP 105049 to 105649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,823 DEBUG Processing 274/1136 atomic regions from SNP 82025 to 82625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,890 DEBUG Processing 146/650 atomic regions from SNP 43526 to 44126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,946 DEBUG Processing 312/477 atomic regions from SNP 93381 to 93981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,953 DEBUG Processing 339/899 atomic regions from SNP 101530 to 102130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,980 DEBUG Processing 352/858 atomic regions from SNP 105349 to 105949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,990 DEBUG Processing 298/1025 atomic regions from SNP 89170 to 89770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,099 DEBUG Processing 275/1136 atomic regions from SNP 82325 to 82925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,133 DEBUG Processing 147/650 atomic regions from SNP 43826 to 44426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,180 DEBUG Processing 313/477 atomic regions from SNP 93681 to 94281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,202 DEBUG Processing 340/899 atomic regions from SNP 101830 to 102430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,242 DEBUG Processing 353/858 atomic regions from SNP 105649 to 106249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,257 DEBUG Processing 299/1025 atomic regions from SNP 89470 to 90070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,380 DEBUG Processing 148/650 atomic regions from SNP 44126 to 44726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,380 DEBUG Processing 276/1136 atomic regions from SNP 82625 to 83225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,416 DEBUG Processing 314/477 atomic regions from SNP 93981 to 94581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,461 DEBUG Processing 341/899 atomic regions from SNP 102130 to 102730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,485 DEBUG Processing 354/858 atomic regions from SNP 105949 to 106549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,517 DEBUG Processing 300/1025 atomic regions from SNP 89770 to 90370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,629 DEBUG Processing 149/650 atomic regions from SNP 44426 to 45026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,657 DEBUG Processing 315/477 atomic regions from SNP 94281 to 94881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,662 DEBUG Processing 277/1136 atomic regions from SNP 82925 to 83525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,717 DEBUG Processing 342/899 atomic regions from SNP 102430 to 103030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,733 DEBUG Processing 355/858 atomic regions from SNP 106249 to 106849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,774 DEBUG Processing 301/1025 atomic regions from SNP 90070 to 90670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,891 DEBUG Processing 150/650 atomic regions from SNP 44726 to 45326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,957 DEBUG Processing 316/477 atomic regions from SNP 94581 to 95181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,987 DEBUG Processing 278/1136 atomic regions from SNP 83225 to 83825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,027 DEBUG Processing 343/899 atomic regions from SNP 102730 to 103330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,036 DEBUG Processing 356/858 atomic regions from SNP 106549 to 107149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,068 DEBUG Processing 302/1025 atomic regions from SNP 90370 to 90970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,125 DEBUG Processing 151/650 atomic regions from SNP 45026 to 45626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,204 DEBUG Processing 317/477 atomic regions from SNP 94881 to 95481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,265 DEBUG Processing 279/1136 atomic regions from SNP 83525 to 84125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,284 DEBUG Processing 344/899 atomic regions from SNP 103030 to 103630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,290 DEBUG Processing 357/858 atomic regions from SNP 106849 to 107449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,337 DEBUG Processing 303/1025 atomic regions from SNP 90670 to 91270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,367 DEBUG Processing 152/650 atomic regions from SNP 45326 to 45926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,449 DEBUG Processing 318/477 atomic regions from SNP 95181 to 95781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,533 DEBUG Processing 358/858 atomic regions from SNP 107149 to 107749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,535 DEBUG Processing 345/899 atomic regions from SNP 103330 to 103930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,542 DEBUG Processing 280/1136 atomic regions from SNP 83825 to 84425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,599 DEBUG Processing 304/1025 atomic regions from SNP 90970 to 91570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,609 DEBUG Processing 153/650 atomic regions from SNP 45626 to 46226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,695 DEBUG Processing 319/477 atomic regions from SNP 95481 to 96081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,776 DEBUG Processing 359/858 atomic regions from SNP 107449 to 108049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,788 DEBUG Processing 346/899 atomic regions from SNP 103630 to 104230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,819 DEBUG Processing 281/1136 atomic regions from SNP 84125 to 84725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,855 DEBUG Processing 154/650 atomic regions from SNP 45926 to 46526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,870 DEBUG Processing 305/1025 atomic regions from SNP 91270 to 91870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,932 DEBUG Processing 320/477 atomic regions from SNP 95781 to 96381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,019 DEBUG Processing 360/858 atomic regions from SNP 107749 to 108349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,038 DEBUG Processing 347/899 atomic regions from SNP 103930 to 104530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,098 DEBUG Processing 282/1136 atomic regions from SNP 84425 to 85025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,099 DEBUG Processing 155/650 atomic regions from SNP 46226 to 46826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,141 DEBUG Processing 306/1025 atomic regions from SNP 91570 to 92170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,171 DEBUG Processing 321/477 atomic regions from SNP 96081 to 96681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,264 DEBUG Processing 361/858 atomic regions from SNP 108049 to 108649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,292 DEBUG Processing 348/899 atomic regions from SNP 104230 to 104830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,348 DEBUG Processing 156/650 atomic regions from SNP 46526 to 47126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,378 DEBUG Processing 283/1136 atomic regions from SNP 84725 to 85325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,411 DEBUG Processing 307/1025 atomic regions from SNP 91870 to 92470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,427 DEBUG Processing 322/477 atomic regions from SNP 96381 to 96981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,510 DEBUG Processing 362/858 atomic regions from SNP 108349 to 108949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,550 DEBUG Processing 349/899 atomic regions from SNP 104530 to 105130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,606 DEBUG Processing 157/650 atomic regions from SNP 46826 to 47426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,665 DEBUG Processing 323/477 atomic regions from SNP 96681 to 97281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,667 DEBUG Processing 284/1136 atomic regions from SNP 85025 to 85625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,682 DEBUG Processing 308/1025 atomic regions from SNP 92170 to 92770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,750 DEBUG Processing 363/858 atomic regions from SNP 108649 to 109249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,805 DEBUG Processing 350/899 atomic regions from SNP 104830 to 105430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,858 DEBUG Processing 158/650 atomic regions from SNP 47126 to 47726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,903 DEBUG Processing 324/477 atomic regions from SNP 96981 to 97581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,955 DEBUG Processing 309/1025 atomic regions from SNP 92470 to 93070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,978 DEBUG Processing 285/1136 atomic regions from SNP 85325 to 85925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,988 DEBUG Processing 364/858 atomic regions from SNP 108949 to 109549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,049 DEBUG Processing 351/899 atomic regions from SNP 105130 to 105730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,102 DEBUG Processing 159/650 atomic regions from SNP 47426 to 48026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,128 DEBUG Processing 325/477 atomic regions from SNP 97281 to 97881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,221 DEBUG Processing 310/1025 atomic regions from SNP 92770 to 93370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,227 DEBUG Processing 365/858 atomic regions from SNP 109249 to 109849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,278 DEBUG Processing 286/1136 atomic regions from SNP 85625 to 86225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,291 DEBUG Processing 352/899 atomic regions from SNP 105430 to 106030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,344 DEBUG Processing 160/650 atomic regions from SNP 47726 to 48326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,353 DEBUG Processing 326/477 atomic regions from SNP 97581 to 98181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,474 DEBUG Processing 366/858 atomic regions from SNP 109549 to 110149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,486 DEBUG Processing 311/1025 atomic regions from SNP 93070 to 93670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,565 DEBUG Processing 353/899 atomic regions from SNP 105730 to 106330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,566 DEBUG Processing 287/1136 atomic regions from SNP 85925 to 86525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,589 DEBUG Processing 327/477 atomic regions from SNP 97881 to 98481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,589 DEBUG Processing 161/650 atomic regions from SNP 48026 to 48626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,716 DEBUG Processing 367/858 atomic regions from SNP 109849 to 110449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,746 DEBUG Processing 312/1025 atomic regions from SNP 93370 to 93970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,818 DEBUG Processing 354/899 atomic regions from SNP 106030 to 106630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,838 DEBUG Processing 162/650 atomic regions from SNP 48326 to 48926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,838 DEBUG Processing 328/477 atomic regions from SNP 98181 to 98781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,856 DEBUG Processing 288/1136 atomic regions from SNP 86225 to 86825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,956 DEBUG Processing 368/858 atomic regions from SNP 110149 to 110749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,003 DEBUG Processing 313/1025 atomic regions from SNP 93670 to 94270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,065 DEBUG Processing 355/899 atomic regions from SNP 106330 to 106930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,078 DEBUG Processing 329/477 atomic regions from SNP 98481 to 99081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,097 DEBUG Processing 163/650 atomic regions from SNP 48626 to 49226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,154 DEBUG Processing 289/1136 atomic regions from SNP 86525 to 87125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,215 DEBUG Processing 369/858 atomic regions from SNP 110449 to 111049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,274 DEBUG Processing 314/1025 atomic regions from SNP 93970 to 94570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,330 DEBUG Processing 356/899 atomic regions from SNP 106630 to 107230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,332 DEBUG Processing 330/477 atomic regions from SNP 98781 to 99381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,352 DEBUG Processing 164/650 atomic regions from SNP 48926 to 49526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,496 DEBUG Processing 290/1136 atomic regions from SNP 86825 to 87425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,506 DEBUG Processing 370/858 atomic regions from SNP 110749 to 111349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,584 DEBUG Processing 315/1025 atomic regions from SNP 94270 to 94870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,608 DEBUG Processing 331/477 atomic regions from SNP 99081 to 99681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,621 DEBUG Processing 357/899 atomic regions from SNP 106930 to 107530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,627 DEBUG Processing 165/650 atomic regions from SNP 49226 to 49826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,831 DEBUG Processing 371/858 atomic regions from SNP 111049 to 111649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,854 DEBUG Processing 291/1136 atomic regions from SNP 87125 to 87725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,926 DEBUG Processing 332/477 atomic regions from SNP 99381 to 99981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,937 DEBUG Processing 358/899 atomic regions from SNP 107230 to 107830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,938 DEBUG Processing 316/1025 atomic regions from SNP 94570 to 95170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,953 DEBUG Processing 166/650 atomic regions from SNP 49526 to 50126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,120 DEBUG Processing 372/858 atomic regions from SNP 111349 to 111949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,180 DEBUG Processing 292/1136 atomic regions from SNP 87425 to 88025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,196 DEBUG Processing 333/477 atomic regions from SNP 99681 to 100281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,224 DEBUG Processing 359/899 atomic regions from SNP 107530 to 108130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,224 DEBUG Processing 167/650 atomic regions from SNP 49826 to 50426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,245 DEBUG Processing 317/1025 atomic regions from SNP 94870 to 95470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,368 DEBUG Processing 373/858 atomic regions from SNP 111649 to 112249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,444 DEBUG Processing 334/477 atomic regions from SNP 99981 to 100581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,470 DEBUG Processing 293/1136 atomic regions from SNP 87725 to 88325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,477 DEBUG Processing 168/650 atomic regions from SNP 50126 to 50726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,484 DEBUG Processing 360/899 atomic regions from SNP 107830 to 108430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,529 DEBUG Processing 318/1025 atomic regions from SNP 95170 to 95770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,610 DEBUG Processing 374/858 atomic regions from SNP 111949 to 112549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,677 DEBUG Processing 335/477 atomic regions from SNP 100281 to 100881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,717 DEBUG Processing 169/650 atomic regions from SNP 50426 to 51026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,732 DEBUG Processing 361/899 atomic regions from SNP 108130 to 108730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,759 DEBUG Processing 294/1136 atomic regions from SNP 88025 to 88625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,815 DEBUG Processing 319/1025 atomic regions from SNP 95470 to 96070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,871 DEBUG Processing 375/858 atomic regions from SNP 112249 to 112849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,916 DEBUG Processing 336/477 atomic regions from SNP 100581 to 101181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,977 DEBUG Processing 170/650 atomic regions from SNP 50726 to 51326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,012 DEBUG Processing 362/899 atomic regions from SNP 108430 to 109030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,052 DEBUG Processing 295/1136 atomic regions from SNP 88325 to 88925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,095 DEBUG Processing 320/1025 atomic regions from SNP 95770 to 96370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,142 DEBUG Processing 376/858 atomic regions from SNP 112549 to 113149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,186 DEBUG Processing 337/477 atomic regions from SNP 100881 to 101481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,262 DEBUG Processing 171/650 atomic regions from SNP 51026 to 51626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,284 DEBUG Processing 363/899 atomic regions from SNP 108730 to 109330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,346 DEBUG Processing 296/1136 atomic regions from SNP 88625 to 89225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,374 DEBUG Processing 321/1025 atomic regions from SNP 96070 to 96670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,377 DEBUG Processing 377/858 atomic regions from SNP 112849 to 113449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,468 DEBUG Processing 338/477 atomic regions from SNP 101181 to 101781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,573 DEBUG Processing 172/650 atomic regions from SNP 51326 to 51926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,622 DEBUG Processing 364/899 atomic regions from SNP 109030 to 109630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,662 DEBUG Processing 378/858 atomic regions from SNP 113149 to 113749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,689 DEBUG Processing 297/1136 atomic regions from SNP 88925 to 89525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,706 DEBUG Processing 322/1025 atomic regions from SNP 96370 to 96970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,748 DEBUG Processing 339/477 atomic regions from SNP 101481 to 102081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,897 DEBUG Processing 173/650 atomic regions from SNP 51626 to 52226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,960 DEBUG Processing 365/899 atomic regions from SNP 109330 to 109930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,987 DEBUG Processing 379/858 atomic regions from SNP 113449 to 114049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,048 DEBUG Processing 298/1136 atomic regions from SNP 89225 to 89825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,062 DEBUG Processing 340/477 atomic regions from SNP 101781 to 102381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,069 DEBUG Processing 323/1025 atomic regions from SNP 96670 to 97270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,187 DEBUG Processing 174/650 atomic regions from SNP 51926 to 52526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,273 DEBUG Processing 366/899 atomic regions from SNP 109630 to 110230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,296 DEBUG Processing 380/858 atomic regions from SNP 113749 to 114349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,432 DEBUG Processing 341/477 atomic regions from SNP 102081 to 102681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,435 DEBUG Processing 299/1136 atomic regions from SNP 89525 to 90125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,465 DEBUG Processing 324/1025 atomic regions from SNP 96970 to 97570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,532 DEBUG Processing 175/650 atomic regions from SNP 52226 to 52826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,597 DEBUG Processing 367/899 atomic regions from SNP 109930 to 110530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,605 DEBUG Processing 381/858 atomic regions from SNP 114049 to 114649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,788 DEBUG Processing 342/477 atomic regions from SNP 102381 to 102981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,851 DEBUG Processing 300/1136 atomic regions from SNP 89825 to 90425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,884 DEBUG Processing 325/1025 atomic regions from SNP 97270 to 97870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,930 DEBUG Processing 176/650 atomic regions from SNP 52526 to 53126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,977 DEBUG Processing 368/899 atomic regions from SNP 110230 to 110830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,987 DEBUG Processing 382/858 atomic regions from SNP 114349 to 114949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,059 DEBUG Processing 343/477 atomic regions from SNP 102681 to 103281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,168 DEBUG Processing 301/1136 atomic regions from SNP 90125 to 90725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,180 DEBUG Processing 326/1025 atomic regions from SNP 97570 to 98170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,277 DEBUG Processing 177/650 atomic regions from SNP 52826 to 53426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,318 DEBUG Processing 383/858 atomic regions from SNP 114649 to 115249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,325 DEBUG Processing 369/899 atomic regions from SNP 110530 to 111130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,364 DEBUG Processing 344/477 atomic regions from SNP 102981 to 103581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,465 DEBUG Processing 327/1025 atomic regions from SNP 97870 to 98470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,489 DEBUG Processing 302/1136 atomic regions from SNP 90425 to 91025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,573 DEBUG Processing 178/650 atomic regions from SNP 53126 to 53726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,630 DEBUG Processing 384/858 atomic regions from SNP 114949 to 115549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,649 DEBUG Processing 370/899 atomic regions from SNP 110830 to 111430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,705 DEBUG Processing 345/477 atomic regions from SNP 103281 to 103881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,797 DEBUG Processing 328/1025 atomic regions from SNP 98170 to 98770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,831 DEBUG Processing 179/650 atomic regions from SNP 53426 to 54026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,832 DEBUG Processing 303/1136 atomic regions from SNP 90725 to 91325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,883 DEBUG Processing 385/858 atomic regions from SNP 115249 to 115849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,917 DEBUG Processing 371/899 atomic regions from SNP 111130 to 111730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,016 DEBUG Processing 346/477 atomic regions from SNP 103581 to 104181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,139 DEBUG Processing 329/1025 atomic regions from SNP 98470 to 99070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,147 DEBUG Processing 180/650 atomic regions from SNP 53726 to 54326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,161 DEBUG Processing 386/858 atomic regions from SNP 115549 to 116149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,179 DEBUG Processing 304/1136 atomic regions from SNP 91025 to 91625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,216 DEBUG Processing 372/899 atomic regions from SNP 111430 to 112030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,289 DEBUG Processing 347/477 atomic regions from SNP 103881 to 104481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,407 DEBUG Processing 181/650 atomic regions from SNP 54026 to 54626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,416 DEBUG Processing 330/1025 atomic regions from SNP 98770 to 99370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,417 DEBUG Processing 387/858 atomic regions from SNP 115849 to 116449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,476 DEBUG Processing 305/1136 atomic regions from SNP 91325 to 91925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,510 DEBUG Processing 373/899 atomic regions from SNP 111730 to 112330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,566 DEBUG Processing 348/477 atomic regions from SNP 104181 to 104781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,683 DEBUG Processing 182/650 atomic regions from SNP 54326 to 54926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,686 DEBUG Processing 388/858 atomic regions from SNP 116149 to 116749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,713 DEBUG Processing 331/1025 atomic regions from SNP 99070 to 99670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,778 DEBUG Processing 306/1136 atomic regions from SNP 91625 to 92225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,838 DEBUG Processing 374/899 atomic regions from SNP 112030 to 112630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,853 DEBUG Processing 349/477 atomic regions from SNP 104481 to 105081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,004 DEBUG Processing 389/858 atomic regions from SNP 116449 to 117049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,013 DEBUG Processing 183/650 atomic regions from SNP 54626 to 55226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,048 DEBUG Processing 332/1025 atomic regions from SNP 99370 to 99970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,139 DEBUG Processing 307/1136 atomic regions from SNP 91925 to 92525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,184 DEBUG Processing 375/899 atomic regions from SNP 112330 to 112930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,201 DEBUG Processing 350/477 atomic regions from SNP 104781 to 105381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,345 DEBUG Processing 390/858 atomic regions from SNP 116749 to 117349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,350 DEBUG Processing 184/650 atomic regions from SNP 54926 to 55526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,392 DEBUG Processing 333/1025 atomic regions from SNP 99670 to 100270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,511 DEBUG Processing 308/1136 atomic regions from SNP 92225 to 92825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,544 DEBUG Processing 376/899 atomic regions from SNP 112630 to 113230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,570 DEBUG Processing 351/477 atomic regions from SNP 105081 to 105681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,698 DEBUG Processing 391/858 atomic regions from SNP 117049 to 117649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,708 DEBUG Processing 185/650 atomic regions from SNP 55226 to 55826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,772 DEBUG Processing 334/1025 atomic regions from SNP 99970 to 100570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,841 DEBUG Processing 377/899 atomic regions from SNP 112930 to 113530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,843 DEBUG Processing 352/477 atomic regions from SNP 105381 to 105981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,855 DEBUG Processing 309/1136 atomic regions from SNP 92525 to 93125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,945 DEBUG Processing 392/858 atomic regions from SNP 117349 to 117949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,963 DEBUG Processing 186/650 atomic regions from SNP 55526 to 56126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,066 DEBUG Processing 335/1025 atomic regions from SNP 100270 to 100870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,184 DEBUG Processing 353/477 atomic regions from SNP 105681 to 106281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,218 DEBUG Processing 378/899 atomic regions from SNP 113230 to 113830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,281 DEBUG Processing 310/1136 atomic regions from SNP 92825 to 93425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,308 DEBUG Processing 393/858 atomic regions from SNP 117649 to 118249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,323 DEBUG Processing 187/650 atomic regions from SNP 55826 to 56426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,375 DEBUG Processing 336/1025 atomic regions from SNP 100570 to 101170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,490 DEBUG Processing 354/477 atomic regions from SNP 105981 to 106581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,556 DEBUG Processing 379/899 atomic regions from SNP 113530 to 114130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,684 DEBUG Processing 394/858 atomic regions from SNP 117949 to 118549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,706 DEBUG Processing 311/1136 atomic regions from SNP 93125 to 93725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,715 DEBUG Processing 188/650 atomic regions from SNP 56126 to 56726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,755 DEBUG Processing 337/1025 atomic regions from SNP 100870 to 101470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,798 DEBUG Processing 355/477 atomic regions from SNP 106281 to 106881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,848 DEBUG Processing 380/899 atomic regions from SNP 113830 to 114430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,941 DEBUG Processing 395/858 atomic regions from SNP 118249 to 118849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,974 DEBUG Processing 189/650 atomic regions from SNP 56426 to 57026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,995 DEBUG Processing 312/1136 atomic regions from SNP 93425 to 94025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,046 DEBUG Processing 356/477 atomic regions from SNP 106581 to 107181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,047 DEBUG Processing 338/1025 atomic regions from SNP 101170 to 101770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,100 DEBUG Processing 381/899 atomic regions from SNP 114130 to 114730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,189 DEBUG Processing 396/858 atomic regions from SNP 118549 to 119149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,227 DEBUG Processing 190/650 atomic regions from SNP 56726 to 57326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,283 DEBUG Processing 313/1136 atomic regions from SNP 93725 to 94325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,288 DEBUG Processing 357/477 atomic regions from SNP 106881 to 107481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,326 DEBUG Processing 339/1025 atomic regions from SNP 101470 to 102070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,353 DEBUG Processing 382/899 atomic regions from SNP 114430 to 115030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,447 DEBUG Processing 397/858 atomic regions from SNP 118849 to 119449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,479 DEBUG Processing 191/650 atomic regions from SNP 57026 to 57626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,548 DEBUG Processing 358/477 atomic regions from SNP 107181 to 107781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,575 DEBUG Processing 314/1136 atomic regions from SNP 94025 to 94625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,598 DEBUG Processing 383/899 atomic regions from SNP 114730 to 115330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,606 DEBUG Processing 340/1025 atomic regions from SNP 101770 to 102370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,699 DEBUG Processing 398/858 atomic regions from SNP 119149 to 119749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,733 DEBUG Processing 192/650 atomic regions from SNP 57326 to 57926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,811 DEBUG Processing 359/477 atomic regions from SNP 107481 to 108081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,836 DEBUG Processing 384/899 atomic regions from SNP 115030 to 115630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,856 DEBUG Processing 315/1136 atomic regions from SNP 94325 to 94925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,879 DEBUG Processing 341/1025 atomic regions from SNP 102070 to 102670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,962 DEBUG Processing 399/858 atomic regions from SNP 119449 to 120049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,990 DEBUG Processing 193/650 atomic regions from SNP 57626 to 58226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,052 DEBUG Processing 360/477 atomic regions from SNP 107781 to 108381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,075 DEBUG Processing 385/899 atomic regions from SNP 115330 to 115930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,133 DEBUG Processing 316/1136 atomic regions from SNP 94625 to 95225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,146 DEBUG Processing 342/1025 atomic regions from SNP 102370 to 102970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,228 DEBUG Processing 400/858 atomic regions from SNP 119749 to 120349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,251 DEBUG Processing 194/650 atomic regions from SNP 57926 to 58526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,305 DEBUG Processing 361/477 atomic regions from SNP 108081 to 108681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,325 DEBUG Processing 386/899 atomic regions from SNP 115630 to 116230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,408 DEBUG Processing 317/1136 atomic regions from SNP 94925 to 95525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,411 DEBUG Processing 343/1025 atomic regions from SNP 102670 to 103270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,498 DEBUG Processing 401/858 atomic regions from SNP 120049 to 120649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,512 DEBUG Processing 195/650 atomic regions from SNP 58226 to 58826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,565 DEBUG Processing 362/477 atomic regions from SNP 108381 to 108981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,584 DEBUG Processing 387/899 atomic regions from SNP 115930 to 116530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,675 DEBUG Processing 344/1025 atomic regions from SNP 102970 to 103570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,683 DEBUG Processing 318/1136 atomic regions from SNP 95225 to 95825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,746 DEBUG Processing 402/858 atomic regions from SNP 120349 to 120949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,767 DEBUG Processing 196/650 atomic regions from SNP 58526 to 59126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,834 DEBUG Processing 363/477 atomic regions from SNP 108681 to 109281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,841 DEBUG Processing 388/899 atomic regions from SNP 116230 to 116830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,947 DEBUG Processing 345/1025 atomic regions from SNP 103270 to 103870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,965 DEBUG Processing 319/1136 atomic regions from SNP 95525 to 96125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,987 DEBUG Processing 403/858 atomic regions from SNP 120649 to 121249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,014 DEBUG Processing 197/650 atomic regions from SNP 58826 to 59426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,092 DEBUG Processing 389/899 atomic regions from SNP 116530 to 117130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,094 DEBUG Processing 364/477 atomic regions from SNP 108981 to 109581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,226 DEBUG Processing 346/1025 atomic regions from SNP 103570 to 104170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,237 DEBUG Processing 404/858 atomic regions from SNP 120949 to 121549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,260 DEBUG Processing 198/650 atomic regions from SNP 59126 to 59726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,263 DEBUG Processing 320/1136 atomic regions from SNP 95825 to 96425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,337 DEBUG Processing 365/477 atomic regions from SNP 109281 to 109881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,340 DEBUG Processing 390/899 atomic regions from SNP 116830 to 117430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,497 DEBUG Processing 405/858 atomic regions from SNP 121249 to 121849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,506 DEBUG Processing 347/1025 atomic regions from SNP 103870 to 104470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,508 DEBUG Processing 199/650 atomic regions from SNP 59426 to 60026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,560 DEBUG Processing 321/1136 atomic regions from SNP 96125 to 96725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,576 DEBUG Processing 366/477 atomic regions from SNP 109581 to 110181 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,582 DEBUG Processing 391/899 atomic regions from SNP 117130 to 117730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,748 DEBUG Processing 406/858 atomic regions from SNP 121549 to 122149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,758 DEBUG Processing 200/650 atomic regions from SNP 59726 to 60326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,788 DEBUG Processing 348/1025 atomic regions from SNP 104170 to 104770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,822 DEBUG Processing 367/477 atomic regions from SNP 109881 to 110481 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,826 DEBUG Processing 392/899 atomic regions from SNP 117430 to 118030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,869 DEBUG Processing 322/1136 atomic regions from SNP 96425 to 97025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,996 DEBUG Processing 407/858 atomic regions from SNP 121849 to 122449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,010 DEBUG Processing 201/650 atomic regions from SNP 60026 to 60626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,071 DEBUG Processing 349/1025 atomic regions from SNP 104470 to 105070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,073 DEBUG Processing 368/477 atomic regions from SNP 110181 to 110781 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,078 DEBUG Processing 393/899 atomic regions from SNP 117730 to 118330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,183 DEBUG Processing 323/1136 atomic regions from SNP 96725 to 97325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,235 DEBUG Processing 408/858 atomic regions from SNP 122149 to 122749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,257 DEBUG Processing 202/650 atomic regions from SNP 60326 to 60926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,314 DEBUG Processing 369/477 atomic regions from SNP 110481 to 111081 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,329 DEBUG Processing 394/899 atomic regions from SNP 118030 to 118630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,351 DEBUG Processing 350/1025 atomic regions from SNP 104770 to 105370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,479 DEBUG Processing 324/1136 atomic regions from SNP 97025 to 97625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,488 DEBUG Processing 409/858 atomic regions from SNP 122449 to 123049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,512 DEBUG Processing 203/650 atomic regions from SNP 60626 to 61226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,568 DEBUG Processing 370/477 atomic regions from SNP 110781 to 111381 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,590 DEBUG Processing 395/899 atomic regions from SNP 118330 to 118930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,635 DEBUG Processing 351/1025 atomic regions from SNP 105070 to 105670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,721 DEBUG Processing 410/858 atomic regions from SNP 122749 to 123349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,750 DEBUG Processing 204/650 atomic regions from SNP 60926 to 61526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,770 DEBUG Processing 325/1136 atomic regions from SNP 97325 to 97925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,837 DEBUG Processing 396/899 atomic regions from SNP 118630 to 119230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,842 DEBUG Processing 371/477 atomic regions from SNP 111081 to 111681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,913 DEBUG Processing 352/1025 atomic regions from SNP 105370 to 105970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,961 DEBUG Processing 411/858 atomic regions from SNP 123049 to 123649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,991 DEBUG Processing 205/650 atomic regions from SNP 61226 to 61826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,066 DEBUG Processing 326/1136 atomic regions from SNP 97625 to 98225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,081 DEBUG Processing 397/899 atomic regions from SNP 118930 to 119530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,108 DEBUG Processing 372/477 atomic regions from SNP 111381 to 111981 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,190 DEBUG Processing 353/1025 atomic regions from SNP 105670 to 106270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,202 DEBUG Processing 412/858 atomic regions from SNP 123349 to 123949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,233 DEBUG Processing 206/650 atomic regions from SNP 61526 to 62126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,324 DEBUG Processing 398/899 atomic regions from SNP 119230 to 119830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,354 DEBUG Processing 373/477 atomic regions from SNP 111681 to 112281 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,379 DEBUG Processing 327/1136 atomic regions from SNP 97925 to 98525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,442 DEBUG Processing 413/858 atomic regions from SNP 123649 to 124249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,461 DEBUG Processing 354/1025 atomic regions from SNP 105970 to 106570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,478 DEBUG Processing 207/650 atomic regions from SNP 61826 to 62426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,569 DEBUG Processing 399/899 atomic regions from SNP 119530 to 120130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,605 DEBUG Processing 374/477 atomic regions from SNP 111981 to 112581 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,682 DEBUG Processing 414/858 atomic regions from SNP 123949 to 124549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,699 DEBUG Processing 328/1136 atomic regions from SNP 98225 to 98825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,721 DEBUG Processing 208/650 atomic regions from SNP 62126 to 62726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,730 DEBUG Processing 355/1025 atomic regions from SNP 106270 to 106870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,819 DEBUG Processing 400/899 atomic regions from SNP 119830 to 120430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,853 DEBUG Processing 375/477 atomic regions from SNP 112281 to 112881 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,930 DEBUG Processing 415/858 atomic regions from SNP 124249 to 124849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,971 DEBUG Processing 209/650 atomic regions from SNP 62426 to 63026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,997 DEBUG Processing 356/1025 atomic regions from SNP 106570 to 107170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,009 DEBUG Processing 329/1136 atomic regions from SNP 98525 to 99125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,069 DEBUG Processing 401/899 atomic regions from SNP 120130 to 120730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,099 DEBUG Processing 376/477 atomic regions from SNP 112581 to 113181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,173 DEBUG Processing 416/858 atomic regions from SNP 124549 to 125149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,214 DEBUG Processing 210/650 atomic regions from SNP 62726 to 63326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,261 DEBUG Processing 357/1025 atomic regions from SNP 106870 to 107470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,300 DEBUG Processing 330/1136 atomic regions from SNP 98825 to 99425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,313 DEBUG Processing 402/899 atomic regions from SNP 120430 to 121030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,340 DEBUG Processing 377/477 atomic regions from SNP 112881 to 113481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,422 DEBUG Processing 417/858 atomic regions from SNP 124849 to 125449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,464 DEBUG Processing 211/650 atomic regions from SNP 63026 to 63626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,535 DEBUG Processing 358/1025 atomic regions from SNP 107170 to 107770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,559 DEBUG Processing 403/899 atomic regions from SNP 120730 to 121330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,577 DEBUG Processing 378/477 atomic regions from SNP 113181 to 113781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,589 DEBUG Processing 331/1136 atomic regions from SNP 99125 to 99725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,668 DEBUG Processing 418/858 atomic regions from SNP 125149 to 125749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,709 DEBUG Processing 212/650 atomic regions from SNP 63326 to 63926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,801 DEBUG Processing 404/899 atomic regions from SNP 121030 to 121630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,817 DEBUG Processing 359/1025 atomic regions from SNP 107470 to 108070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,821 DEBUG Processing 379/477 atomic regions from SNP 113481 to 114081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,901 DEBUG Processing 332/1136 atomic regions from SNP 99425 to 100025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,913 DEBUG Processing 419/858 atomic regions from SNP 125449 to 126049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,956 DEBUG Processing 213/650 atomic regions from SNP 63626 to 64226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,062 DEBUG Processing 405/899 atomic regions from SNP 121330 to 121930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,072 DEBUG Processing 380/477 atomic regions from SNP 113781 to 114381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,104 DEBUG Processing 360/1025 atomic regions from SNP 107770 to 108370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,161 DEBUG Processing 420/858 atomic regions from SNP 125749 to 126349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,203 DEBUG Processing 214/650 atomic regions from SNP 63926 to 64526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,205 DEBUG Processing 333/1136 atomic regions from SNP 99725 to 100325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,309 DEBUG Processing 406/899 atomic regions from SNP 121630 to 122230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,320 DEBUG Processing 381/477 atomic regions from SNP 114081 to 114681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,392 DEBUG Processing 361/1025 atomic regions from SNP 108070 to 108670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,411 DEBUG Processing 421/858 atomic regions from SNP 126049 to 126649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,452 DEBUG Processing 215/650 atomic regions from SNP 64226 to 64826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,494 DEBUG Processing 334/1136 atomic regions from SNP 100025 to 100625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,554 DEBUG Processing 407/899 atomic regions from SNP 121930 to 122530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,557 DEBUG Processing 382/477 atomic regions from SNP 114381 to 114981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,679 DEBUG Processing 422/858 atomic regions from SNP 126349 to 126949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,681 DEBUG Processing 362/1025 atomic regions from SNP 108370 to 108970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,708 DEBUG Processing 216/650 atomic regions from SNP 64526 to 65126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,783 DEBUG Processing 335/1136 atomic regions from SNP 100325 to 100925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,787 DEBUG Processing 383/477 atomic regions from SNP 114681 to 115281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,790 DEBUG Processing 408/899 atomic regions from SNP 122230 to 122830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,949 DEBUG Processing 423/858 atomic regions from SNP 126649 to 127249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,964 DEBUG Processing 217/650 atomic regions from SNP 64826 to 65426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,972 DEBUG Processing 363/1025 atomic regions from SNP 108670 to 109270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,028 DEBUG Processing 384/477 atomic regions from SNP 114981 to 115581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,039 DEBUG Processing 409/899 atomic regions from SNP 122530 to 123130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,073 DEBUG Processing 336/1136 atomic regions from SNP 100625 to 101225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,220 DEBUG Processing 218/650 atomic regions from SNP 65126 to 65726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,224 DEBUG Processing 424/858 atomic regions from SNP 126949 to 127549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,263 DEBUG Processing 364/1025 atomic regions from SNP 108970 to 109570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,301 DEBUG Processing 410/899 atomic regions from SNP 122830 to 123430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,303 DEBUG Processing 385/477 atomic regions from SNP 115281 to 115881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,361 DEBUG Processing 337/1136 atomic regions from SNP 100925 to 101525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,468 DEBUG Processing 219/650 atomic regions from SNP 65426 to 66026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,475 DEBUG Processing 425/858 atomic regions from SNP 127249 to 127849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,548 DEBUG Processing 411/899 atomic regions from SNP 123130 to 123730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,550 DEBUG Processing 365/1025 atomic regions from SNP 109270 to 109870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,577 DEBUG Processing 386/477 atomic regions from SNP 115581 to 116181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,651 DEBUG Processing 338/1136 atomic regions from SNP 101225 to 101825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,717 DEBUG Processing 220/650 atomic regions from SNP 65726 to 66326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,722 DEBUG Processing 426/858 atomic regions from SNP 127549 to 128149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,807 DEBUG Processing 412/899 atomic regions from SNP 123430 to 124030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,831 DEBUG Processing 366/1025 atomic regions from SNP 109570 to 110170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,831 DEBUG Processing 387/477 atomic regions from SNP 115881 to 116481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,944 DEBUG Processing 339/1136 atomic regions from SNP 101525 to 102125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,982 DEBUG Processing 221/650 atomic regions from SNP 66026 to 66626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,982 DEBUG Processing 427/858 atomic regions from SNP 127849 to 128449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,110 DEBUG Processing 413/899 atomic regions from SNP 123730 to 124330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,138 DEBUG Processing 388/477 atomic regions from SNP 116181 to 116781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,175 DEBUG Processing 367/1025 atomic regions from SNP 109870 to 110470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,288 DEBUG Processing 428/858 atomic regions from SNP 128149 to 128749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,295 DEBUG Processing 222/650 atomic regions from SNP 66326 to 66926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,298 DEBUG Processing 340/1136 atomic regions from SNP 101825 to 102425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,418 DEBUG Processing 414/899 atomic regions from SNP 124030 to 124630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,484 DEBUG Processing 389/477 atomic regions from SNP 116481 to 117081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,538 DEBUG Processing 368/1025 atomic regions from SNP 110170 to 110770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,634 DEBUG Processing 429/858 atomic regions from SNP 128449 to 129049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,667 DEBUG Processing 223/650 atomic regions from SNP 66626 to 67226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,710 DEBUG Processing 341/1136 atomic regions from SNP 102125 to 102725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,748 DEBUG Processing 415/899 atomic regions from SNP 124330 to 124930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,836 DEBUG Processing 390/477 atomic regions from SNP 116781 to 117381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,908 DEBUG Processing 369/1025 atomic regions from SNP 110470 to 111070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,941 DEBUG Processing 430/858 atomic regions from SNP 128749 to 129349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,038 DEBUG Processing 224/650 atomic regions from SNP 66926 to 67526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,145 DEBUG Processing 342/1136 atomic regions from SNP 102425 to 103025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,147 DEBUG Processing 416/899 atomic regions from SNP 124630 to 125230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,223 DEBUG Processing 391/477 atomic regions from SNP 117081 to 117681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,302 DEBUG Processing 370/1025 atomic regions from SNP 110770 to 111370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,311 DEBUG Processing 431/858 atomic regions from SNP 129049 to 129649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,362 DEBUG Processing 225/650 atomic regions from SNP 67226 to 67826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,547 DEBUG Processing 417/899 atomic regions from SNP 124930 to 125530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,576 DEBUG Processing 343/1136 atomic regions from SNP 102725 to 103325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,628 DEBUG Processing 392/477 atomic regions from SNP 117381 to 117981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,702 DEBUG Processing 432/858 atomic regions from SNP 129349 to 129949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,730 DEBUG Processing 371/1025 atomic regions from SNP 111070 to 111670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,733 DEBUG Processing 226/650 atomic regions from SNP 67526 to 68126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,901 DEBUG Processing 418/899 atomic regions from SNP 125230 to 125830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,991 DEBUG Processing 344/1136 atomic regions from SNP 103025 to 103625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,026 DEBUG Processing 393/477 atomic regions from SNP 117681 to 118281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,091 DEBUG Processing 433/858 atomic regions from SNP 129649 to 130249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,120 DEBUG Processing 227/650 atomic regions from SNP 67826 to 68426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,148 DEBUG Processing 372/1025 atomic regions from SNP 111370 to 111970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,246 DEBUG Processing 419/899 atomic regions from SNP 125530 to 126130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,336 DEBUG Processing 394/477 atomic regions from SNP 117981 to 118581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,336 DEBUG Processing 345/1136 atomic regions from SNP 103325 to 103925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,375 DEBUG Processing 434/858 atomic regions from SNP 129949 to 130549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,407 DEBUG Processing 228/650 atomic regions from SNP 68126 to 68726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,463 DEBUG Processing 373/1025 atomic regions from SNP 111670 to 112270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,513 DEBUG Processing 420/899 atomic regions from SNP 125830 to 126430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,588 DEBUG Processing 395/477 atomic regions from SNP 118281 to 118881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,619 DEBUG Processing 435/858 atomic regions from SNP 130249 to 130849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,637 DEBUG Processing 346/1136 atomic regions from SNP 103625 to 104225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,657 DEBUG Processing 229/650 atomic regions from SNP 68426 to 69026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,752 DEBUG Processing 374/1025 atomic regions from SNP 111970 to 112570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,782 DEBUG Processing 421/899 atomic regions from SNP 126130 to 126730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,890 DEBUG Processing 396/477 atomic regions from SNP 118581 to 119181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,909 DEBUG Processing 436/858 atomic regions from SNP 130549 to 131149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,920 DEBUG Processing 230/650 atomic regions from SNP 68726 to 69326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,959 DEBUG Processing 347/1136 atomic regions from SNP 103925 to 104525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,068 DEBUG Processing 375/1025 atomic regions from SNP 112270 to 112870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,071 DEBUG Processing 422/899 atomic regions from SNP 126430 to 127030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,190 DEBUG Processing 397/477 atomic regions from SNP 118881 to 119481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,206 DEBUG Processing 437/858 atomic regions from SNP 130849 to 131449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,230 DEBUG Processing 231/650 atomic regions from SNP 69026 to 69626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,290 DEBUG Processing 348/1136 atomic regions from SNP 104225 to 104825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,408 DEBUG Processing 423/899 atomic regions from SNP 126730 to 127330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,427 DEBUG Processing 376/1025 atomic regions from SNP 112570 to 113170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,511 DEBUG Processing 398/477 atomic regions from SNP 119181 to 119781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,526 DEBUG Processing 438/858 atomic regions from SNP 131149 to 131749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,562 DEBUG Processing 232/650 atomic regions from SNP 69326 to 69926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,646 DEBUG Processing 349/1136 atomic regions from SNP 104525 to 105125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,740 DEBUG Processing 424/899 atomic regions from SNP 127030 to 127630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,799 DEBUG Processing 377/1025 atomic regions from SNP 112870 to 113470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,846 DEBUG Processing 399/477 atomic regions from SNP 119481 to 120081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,855 DEBUG Processing 439/858 atomic regions from SNP 131449 to 132049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,891 DEBUG Processing 233/650 atomic regions from SNP 69626 to 70226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,988 DEBUG Processing 350/1136 atomic regions from SNP 104825 to 105425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,006 DEBUG Processing 425/899 atomic regions from SNP 127330 to 127930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,153 DEBUG Processing 378/1025 atomic regions from SNP 113170 to 113770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,226 DEBUG Processing 400/477 atomic regions from SNP 119781 to 120381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,234 DEBUG Processing 440/858 atomic regions from SNP 131749 to 132349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,280 DEBUG Processing 234/650 atomic regions from SNP 69926 to 70526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,339 DEBUG Processing 426/899 atomic regions from SNP 127630 to 128230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,388 DEBUG Processing 351/1136 atomic regions from SNP 105125 to 105725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,507 DEBUG Processing 379/1025 atomic regions from SNP 113470 to 114070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,594 DEBUG Processing 401/477 atomic regions from SNP 120081 to 120681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,608 DEBUG Processing 441/858 atomic regions from SNP 132049 to 132649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,676 DEBUG Processing 235/650 atomic regions from SNP 70226 to 70826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,708 DEBUG Processing 427/899 atomic regions from SNP 127930 to 128530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,774 DEBUG Processing 352/1136 atomic regions from SNP 105425 to 106025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,803 DEBUG Processing 380/1025 atomic regions from SNP 113770 to 114370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,817 DEBUG Processing 402/477 atomic regions from SNP 120381 to 120981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,852 DEBUG Processing 442/858 atomic regions from SNP 132349 to 132949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,933 DEBUG Processing 236/650 atomic regions from SNP 70526 to 71126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,977 DEBUG Processing 428/899 atomic regions from SNP 128230 to 128830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,056 DEBUG Processing 403/477 atomic regions from SNP 120681 to 121281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,076 DEBUG Processing 353/1136 atomic regions from SNP 105725 to 106325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,082 DEBUG Processing 381/1025 atomic regions from SNP 114070 to 114670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,086 DEBUG Processing 443/858 atomic regions from SNP 132649 to 133249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,166 DEBUG Processing 237/650 atomic regions from SNP 70826 to 71426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,217 DEBUG Processing 429/899 atomic regions from SNP 128530 to 129130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,304 DEBUG Processing 404/477 atomic regions from SNP 120981 to 121581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,327 DEBUG Processing 444/858 atomic regions from SNP 132949 to 133549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,356 DEBUG Processing 382/1025 atomic regions from SNP 114370 to 114970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,363 DEBUG Processing 354/1136 atomic regions from SNP 106025 to 106625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,398 DEBUG Processing 238/650 atomic regions from SNP 71126 to 71726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,467 DEBUG Processing 430/899 atomic regions from SNP 128830 to 129430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,543 DEBUG Processing 405/477 atomic regions from SNP 121281 to 121881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,579 DEBUG Processing 445/858 atomic regions from SNP 133249 to 133849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,635 DEBUG Processing 383/1025 atomic regions from SNP 114670 to 115270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,648 DEBUG Processing 239/650 atomic regions from SNP 71426 to 72026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,655 DEBUG Processing 355/1136 atomic regions from SNP 106325 to 106925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,717 DEBUG Processing 431/899 atomic regions from SNP 129130 to 129730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,770 DEBUG Processing 406/477 atomic regions from SNP 121581 to 122181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,829 DEBUG Processing 446/858 atomic regions from SNP 133549 to 134149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,908 DEBUG Processing 240/650 atomic regions from SNP 71726 to 72326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,928 DEBUG Processing 384/1025 atomic regions from SNP 114970 to 115570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,957 DEBUG Processing 356/1136 atomic regions from SNP 106625 to 107225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,977 DEBUG Processing 432/899 atomic regions from SNP 129430 to 130030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,005 DEBUG Processing 407/477 atomic regions from SNP 121881 to 122481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,074 DEBUG Processing 447/858 atomic regions from SNP 133849 to 134449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,163 DEBUG Processing 241/650 atomic regions from SNP 72026 to 72626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,218 DEBUG Processing 385/1025 atomic regions from SNP 115270 to 115870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,235 DEBUG Processing 433/899 atomic regions from SNP 129730 to 130330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,252 DEBUG Processing 408/477 atomic regions from SNP 122181 to 122781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,278 DEBUG Processing 357/1136 atomic regions from SNP 106925 to 107525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,309 DEBUG Processing 448/858 atomic regions from SNP 134149 to 134749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,407 DEBUG Processing 242/650 atomic regions from SNP 72326 to 72926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,497 DEBUG Processing 434/899 atomic regions from SNP 130030 to 130630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,503 DEBUG Processing 409/477 atomic regions from SNP 122481 to 123081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,505 DEBUG Processing 386/1025 atomic regions from SNP 115570 to 116170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,553 DEBUG Processing 449/858 atomic regions from SNP 134449 to 135049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,590 DEBUG Processing 358/1136 atomic regions from SNP 107225 to 107825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,648 DEBUG Processing 243/650 atomic regions from SNP 72626 to 73226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,751 DEBUG Processing 410/477 atomic regions from SNP 122781 to 123381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,753 DEBUG Processing 435/899 atomic regions from SNP 130330 to 130930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,784 DEBUG Processing 387/1025 atomic regions from SNP 115870 to 116470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,795 DEBUG Processing 450/858 atomic regions from SNP 134749 to 135349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,884 DEBUG Processing 244/650 atomic regions from SNP 72926 to 73526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,885 DEBUG Processing 359/1136 atomic regions from SNP 107525 to 108125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,992 DEBUG Processing 411/477 atomic regions from SNP 123081 to 123681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,010 DEBUG Processing 436/899 atomic regions from SNP 130630 to 131230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,042 DEBUG Processing 451/858 atomic regions from SNP 135049 to 135649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,060 DEBUG Processing 388/1025 atomic regions from SNP 116170 to 116770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,121 DEBUG Processing 245/650 atomic regions from SNP 73226 to 73826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,205 DEBUG Processing 360/1136 atomic regions from SNP 107825 to 108425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,237 DEBUG Processing 412/477 atomic regions from SNP 123381 to 123981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,267 DEBUG Processing 437/899 atomic regions from SNP 130930 to 131530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,281 DEBUG Processing 452/858 atomic regions from SNP 135349 to 135949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,336 DEBUG Processing 389/1025 atomic regions from SNP 116470 to 117070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,356 DEBUG Processing 246/650 atomic regions from SNP 73526 to 74126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,476 DEBUG Processing 413/477 atomic regions from SNP 123681 to 124281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,514 DEBUG Processing 438/899 atomic regions from SNP 131230 to 131830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,519 DEBUG Processing 453/858 atomic regions from SNP 135649 to 136249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,526 DEBUG Processing 361/1136 atomic regions from SNP 108125 to 108725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,595 DEBUG Processing 247/650 atomic regions from SNP 73826 to 74426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,601 DEBUG Processing 390/1025 atomic regions from SNP 116770 to 117370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,714 DEBUG Processing 414/477 atomic regions from SNP 123981 to 124581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,758 DEBUG Processing 454/858 atomic regions from SNP 135949 to 136549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,762 DEBUG Processing 439/899 atomic regions from SNP 131530 to 132130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,828 DEBUG Processing 362/1136 atomic regions from SNP 108425 to 109025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,832 DEBUG Processing 248/650 atomic regions from SNP 74126 to 74726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,867 DEBUG Processing 391/1025 atomic regions from SNP 117070 to 117670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,943 DEBUG Processing 415/477 atomic regions from SNP 124281 to 124881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,996 DEBUG Processing 455/858 atomic regions from SNP 136249 to 136849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,011 DEBUG Processing 440/899 atomic regions from SNP 131830 to 132430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,077 DEBUG Processing 249/650 atomic regions from SNP 74426 to 75026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,117 DEBUG Processing 363/1136 atomic regions from SNP 108725 to 109325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,133 DEBUG Processing 392/1025 atomic regions from SNP 117370 to 117970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,168 DEBUG Processing 416/477 atomic regions from SNP 124581 to 125181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,229 DEBUG Processing 456/858 atomic regions from SNP 136549 to 137149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,257 DEBUG Processing 441/899 atomic regions from SNP 132130 to 132730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,322 DEBUG Processing 250/650 atomic regions from SNP 74726 to 75326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,394 DEBUG Processing 417/477 atomic regions from SNP 124881 to 125481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,399 DEBUG Processing 393/1025 atomic regions from SNP 117670 to 118270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,422 DEBUG Processing 364/1136 atomic regions from SNP 109025 to 109625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,462 DEBUG Processing 457/858 atomic regions from SNP 136849 to 137449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,506 DEBUG Processing 442/899 atomic regions from SNP 132430 to 133030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,573 DEBUG Processing 251/650 atomic regions from SNP 75026 to 75626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,631 DEBUG Processing 418/477 atomic regions from SNP 125181 to 125781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,669 DEBUG Processing 394/1025 atomic regions from SNP 117970 to 118570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,691 DEBUG Processing 458/858 atomic regions from SNP 137149 to 137749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,701 DEBUG Processing 365/1136 atomic regions from SNP 109325 to 109925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,751 DEBUG Processing 443/899 atomic regions from SNP 132730 to 133330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,822 DEBUG Processing 252/650 atomic regions from SNP 75326 to 75926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,874 DEBUG Processing 419/477 atomic regions from SNP 125481 to 126081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,926 DEBUG Processing 459/858 atomic regions from SNP 137449 to 138049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,943 DEBUG Processing 395/1025 atomic regions from SNP 118270 to 118870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,981 DEBUG Processing 366/1136 atomic regions from SNP 109625 to 110225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,994 DEBUG Processing 444/899 atomic regions from SNP 133030 to 133630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,063 DEBUG Processing 253/650 atomic regions from SNP 75626 to 76226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,124 DEBUG Processing 420/477 atomic regions from SNP 125781 to 126381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,161 DEBUG Processing 460/858 atomic regions from SNP 137749 to 138349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,216 DEBUG Processing 396/1025 atomic regions from SNP 118570 to 119170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,238 DEBUG Processing 445/899 atomic regions from SNP 133330 to 133930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,260 DEBUG Processing 367/1136 atomic regions from SNP 109925 to 110525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,300 DEBUG Processing 254/650 atomic regions from SNP 75926 to 76526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,365 DEBUG Processing 421/477 atomic regions from SNP 126081 to 126681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,403 DEBUG Processing 461/858 atomic regions from SNP 138049 to 138649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,491 DEBUG Processing 446/899 atomic regions from SNP 133630 to 134230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,494 DEBUG Processing 397/1025 atomic regions from SNP 118870 to 119470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,538 DEBUG Processing 255/650 atomic regions from SNP 76226 to 76826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,542 DEBUG Processing 368/1136 atomic regions from SNP 110225 to 110825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,598 DEBUG Processing 422/477 atomic regions from SNP 126381 to 126981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,639 DEBUG Processing 462/858 atomic regions from SNP 138349 to 138949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,745 DEBUG Processing 447/899 atomic regions from SNP 133930 to 134530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,786 DEBUG Processing 256/650 atomic regions from SNP 76526 to 77126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,790 DEBUG Processing 398/1025 atomic regions from SNP 119170 to 119770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,828 DEBUG Processing 369/1136 atomic regions from SNP 110525 to 111125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,835 DEBUG Processing 423/477 atomic regions from SNP 126681 to 127281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,877 DEBUG Processing 463/858 atomic regions from SNP 138649 to 139249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,996 DEBUG Processing 448/899 atomic regions from SNP 134230 to 134830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,033 DEBUG Processing 257/650 atomic regions from SNP 76826 to 77426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,072 DEBUG Processing 399/1025 atomic regions from SNP 119470 to 120070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,081 DEBUG Processing 424/477 atomic regions from SNP 126981 to 127581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,114 DEBUG Processing 464/858 atomic regions from SNP 138949 to 139549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,121 DEBUG Processing 370/1136 atomic regions from SNP 110825 to 111425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,242 DEBUG Processing 449/899 atomic regions from SNP 134530 to 135130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,276 DEBUG Processing 258/650 atomic regions from SNP 77126 to 77726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,324 DEBUG Processing 425/477 atomic regions from SNP 127281 to 127881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,349 DEBUG Processing 400/1025 atomic regions from SNP 119770 to 120370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,355 DEBUG Processing 465/858 atomic regions from SNP 139249 to 139849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,403 DEBUG Processing 371/1136 atomic regions from SNP 111125 to 111725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,489 DEBUG Processing 450/899 atomic regions from SNP 134830 to 135430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,516 DEBUG Processing 259/650 atomic regions from SNP 77426 to 78026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,565 DEBUG Processing 426/477 atomic regions from SNP 127581 to 128181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,599 DEBUG Processing 466/858 atomic regions from SNP 139549 to 140149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,626 DEBUG Processing 401/1025 atomic regions from SNP 120070 to 120670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,685 DEBUG Processing 372/1136 atomic regions from SNP 111425 to 112025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,771 DEBUG Processing 451/899 atomic regions from SNP 135130 to 135730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,802 DEBUG Processing 260/650 atomic regions from SNP 77726 to 78326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,861 DEBUG Processing 427/477 atomic regions from SNP 127881 to 128481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,892 DEBUG Processing 467/858 atomic regions from SNP 139849 to 140449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,948 DEBUG Processing 402/1025 atomic regions from SNP 120370 to 120970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,020 DEBUG Processing 373/1136 atomic regions from SNP 111725 to 112325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,023 DEBUG Processing 452/899 atomic regions from SNP 135430 to 136030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,064 DEBUG Processing 261/650 atomic regions from SNP 78026 to 78626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,102 DEBUG Processing 428/477 atomic regions from SNP 128181 to 128781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,124 DEBUG Processing 468/858 atomic regions from SNP 140149 to 140749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,220 DEBUG Processing 403/1025 atomic regions from SNP 120670 to 121270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,279 DEBUG Processing 453/899 atomic regions from SNP 135730 to 136330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,314 DEBUG Processing 262/650 atomic regions from SNP 78326 to 78926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,324 DEBUG Processing 374/1136 atomic regions from SNP 112025 to 112625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,336 DEBUG Processing 429/477 atomic regions from SNP 128481 to 129081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,366 DEBUG Processing 469/858 atomic regions from SNP 140449 to 141049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,485 DEBUG Processing 404/1025 atomic regions from SNP 120970 to 121570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,519 DEBUG Processing 454/899 atomic regions from SNP 136030 to 136630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,560 DEBUG Processing 263/650 atomic regions from SNP 78626 to 79226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,572 DEBUG Processing 430/477 atomic regions from SNP 128781 to 129381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,606 DEBUG Processing 470/858 atomic regions from SNP 140749 to 141349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,615 DEBUG Processing 375/1136 atomic regions from SNP 112325 to 112925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,752 DEBUG Processing 405/1025 atomic regions from SNP 121270 to 121870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,756 DEBUG Processing 455/899 atomic regions from SNP 136330 to 136930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,800 DEBUG Processing 431/477 atomic regions from SNP 129081 to 129681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,804 DEBUG Processing 264/650 atomic regions from SNP 78926 to 79526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,845 DEBUG Processing 471/858 atomic regions from SNP 141049 to 141649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,893 DEBUG Processing 376/1136 atomic regions from SNP 112625 to 113225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,994 DEBUG Processing 456/899 atomic regions from SNP 136630 to 137230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,027 DEBUG Processing 406/1025 atomic regions from SNP 121570 to 122170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,030 DEBUG Processing 432/477 atomic regions from SNP 129381 to 129981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,045 DEBUG Processing 265/650 atomic regions from SNP 79226 to 79826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,088 DEBUG Processing 472/858 atomic regions from SNP 141349 to 141949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,175 DEBUG Processing 377/1136 atomic regions from SNP 112925 to 113525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,243 DEBUG Processing 457/899 atomic regions from SNP 136930 to 137530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,263 DEBUG Processing 433/477 atomic regions from SNP 129681 to 130281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,287 DEBUG Processing 266/650 atomic regions from SNP 79526 to 80126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,299 DEBUG Processing 407/1025 atomic regions from SNP 121870 to 122470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,326 DEBUG Processing 473/858 atomic regions from SNP 141649 to 142249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,455 DEBUG Processing 378/1136 atomic regions from SNP 113225 to 113825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,497 DEBUG Processing 434/477 atomic regions from SNP 129981 to 130581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,500 DEBUG Processing 458/899 atomic regions from SNP 137230 to 137830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,527 DEBUG Processing 267/650 atomic regions from SNP 79826 to 80426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,564 DEBUG Processing 474/858 atomic regions from SNP 141949 to 142549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,591 DEBUG Processing 408/1025 atomic regions from SNP 122170 to 122770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,730 DEBUG Processing 435/477 atomic regions from SNP 130281 to 130881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,740 DEBUG Processing 379/1136 atomic regions from SNP 113525 to 114125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,758 DEBUG Processing 459/899 atomic regions from SNP 137530 to 138130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,767 DEBUG Processing 268/650 atomic regions from SNP 80126 to 80726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,795 DEBUG Processing 475/858 atomic regions from SNP 142249 to 142849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,872 DEBUG Processing 409/1025 atomic regions from SNP 122470 to 123070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,966 DEBUG Processing 436/477 atomic regions from SNP 130581 to 131181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,013 DEBUG Processing 269/650 atomic regions from SNP 80426 to 81026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,017 DEBUG Processing 460/899 atomic regions from SNP 137830 to 138430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,023 DEBUG Processing 380/1136 atomic regions from SNP 113825 to 114425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,035 DEBUG Processing 476/858 atomic regions from SNP 142549 to 143149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,139 DEBUG Processing 410/1025 atomic regions from SNP 122770 to 123370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,195 DEBUG Processing 437/477 atomic regions from SNP 130881 to 131481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,257 DEBUG Processing 270/650 atomic regions from SNP 80726 to 81326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,271 DEBUG Processing 461/899 atomic regions from SNP 138130 to 138730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,273 DEBUG Processing 477/858 atomic regions from SNP 142849 to 143449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,301 DEBUG Processing 381/1136 atomic regions from SNP 114125 to 114725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,404 DEBUG Processing 411/1025 atomic regions from SNP 123070 to 123670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,425 DEBUG Processing 438/477 atomic regions from SNP 131181 to 131781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,505 DEBUG Processing 271/650 atomic regions from SNP 81026 to 81626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,513 DEBUG Processing 478/858 atomic regions from SNP 143149 to 143749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,521 DEBUG Processing 462/899 atomic regions from SNP 138430 to 139030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,586 DEBUG Processing 382/1136 atomic regions from SNP 114425 to 115025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,652 DEBUG Processing 439/477 atomic regions from SNP 131481 to 132081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,669 DEBUG Processing 412/1025 atomic regions from SNP 123370 to 123970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,753 DEBUG Processing 272/650 atomic regions from SNP 81326 to 81926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,756 DEBUG Processing 479/858 atomic regions from SNP 143449 to 144049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,769 DEBUG Processing 463/899 atomic regions from SNP 138730 to 139330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,867 DEBUG Processing 383/1136 atomic regions from SNP 114725 to 115325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,884 DEBUG Processing 440/477 atomic regions from SNP 131781 to 132381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,931 DEBUG Processing 413/1025 atomic regions from SNP 123670 to 124270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,057 DEBUG Processing 480/858 atomic regions from SNP 143749 to 144349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,057 DEBUG Processing 273/650 atomic regions from SNP 81626 to 82226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,071 DEBUG Processing 464/899 atomic regions from SNP 139030 to 139630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,185 DEBUG Processing 441/477 atomic regions from SNP 132081 to 132681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,218 DEBUG Processing 384/1136 atomic regions from SNP 115025 to 115625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,234 DEBUG Processing 414/1025 atomic regions from SNP 123970 to 124570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,396 DEBUG Processing 481/858 atomic regions from SNP 144049 to 144649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,408 DEBUG Processing 274/650 atomic regions from SNP 81926 to 82526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,421 DEBUG Processing 465/899 atomic regions from SNP 139330 to 139930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,532 DEBUG Processing 442/477 atomic regions from SNP 132381 to 132981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,580 DEBUG Processing 415/1025 atomic regions from SNP 124270 to 124870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,587 DEBUG Processing 385/1136 atomic regions from SNP 115325 to 115925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,635 DEBUG Processing 482/858 atomic regions from SNP 144349 to 144949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,648 DEBUG Processing 275/650 atomic regions from SNP 82226 to 82826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,669 DEBUG Processing 466/899 atomic regions from SNP 139630 to 140230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,792 DEBUG Processing 443/477 atomic regions from SNP 132681 to 133281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,953 DEBUG Processing 483/858 atomic regions from SNP 144649 to 145249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,962 DEBUG Processing 416/1025 atomic regions from SNP 124570 to 125170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,965 DEBUG Processing 276/650 atomic regions from SNP 82526 to 83126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,980 DEBUG Processing 386/1136 atomic regions from SNP 115625 to 116225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,003 DEBUG Processing 467/899 atomic regions from SNP 139930 to 140530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,076 DEBUG Processing 444/477 atomic regions from SNP 132981 to 133581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,224 DEBUG Processing 484/858 atomic regions from SNP 144949 to 145549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,229 DEBUG Processing 277/650 atomic regions from SNP 82826 to 83426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,254 DEBUG Processing 417/1025 atomic regions from SNP 124870 to 125470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,287 DEBUG Processing 387/1136 atomic regions from SNP 115925 to 116525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,291 DEBUG Processing 468/899 atomic regions from SNP 140230 to 140830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,318 DEBUG Processing 445/477 atomic regions from SNP 133281 to 133881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,463 DEBUG Processing 485/858 atomic regions from SNP 145249 to 145849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,487 DEBUG Processing 278/650 atomic regions from SNP 83126 to 83726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,551 DEBUG Processing 418/1025 atomic regions from SNP 125170 to 125770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,557 DEBUG Processing 469/899 atomic regions from SNP 140530 to 141130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,566 DEBUG Processing 446/477 atomic regions from SNP 133581 to 134181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,587 DEBUG Processing 388/1136 atomic regions from SNP 116225 to 116825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,713 DEBUG Processing 486/858 atomic regions from SNP 145549 to 146149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,747 DEBUG Processing 279/650 atomic regions from SNP 83426 to 84026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,817 DEBUG Processing 447/477 atomic regions from SNP 133881 to 134481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,829 DEBUG Processing 419/1025 atomic regions from SNP 125470 to 126070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,837 DEBUG Processing 470/899 atomic regions from SNP 140830 to 141430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,881 DEBUG Processing 389/1136 atomic regions from SNP 116525 to 117125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,965 DEBUG Processing 487/858 atomic regions from SNP 145849 to 146449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,004 DEBUG Processing 280/650 atomic regions from SNP 83726 to 84326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,092 DEBUG Processing 448/477 atomic regions from SNP 134181 to 134781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,134 DEBUG Processing 471/899 atomic regions from SNP 141130 to 141730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,140 DEBUG Processing 420/1025 atomic regions from SNP 125770 to 126370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,202 DEBUG Processing 390/1136 atomic regions from SNP 116825 to 117425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,233 DEBUG Processing 488/858 atomic regions from SNP 146149 to 146749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,274 DEBUG Processing 281/650 atomic regions from SNP 84026 to 84626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,416 DEBUG Processing 449/477 atomic regions from SNP 134481 to 135081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,490 DEBUG Processing 472/899 atomic regions from SNP 141430 to 142030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,518 DEBUG Processing 421/1025 atomic regions from SNP 126070 to 126670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,577 DEBUG Processing 489/858 atomic regions from SNP 146449 to 147049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,599 DEBUG Processing 391/1136 atomic regions from SNP 117125 to 117725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,613 DEBUG Processing 282/650 atomic regions from SNP 84326 to 84926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,753 DEBUG Processing 450/477 atomic regions from SNP 134781 to 135381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,783 DEBUG Processing 473/899 atomic regions from SNP 141730 to 142330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,839 DEBUG Processing 490/858 atomic regions from SNP 146749 to 147349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,845 DEBUG Processing 422/1025 atomic regions from SNP 126370 to 126970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,879 DEBUG Processing 283/650 atomic regions from SNP 84626 to 85226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,904 DEBUG Processing 392/1136 atomic regions from SNP 117425 to 118025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,011 DEBUG Processing 451/477 atomic regions from SNP 135081 to 135681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,138 DEBUG Processing 474/899 atomic regions from SNP 142030 to 142630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,166 DEBUG Processing 491/858 atomic regions from SNP 147049 to 147649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,221 DEBUG Processing 284/650 atomic regions from SNP 84926 to 85526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,248 DEBUG Processing 423/1025 atomic regions from SNP 126670 to 127270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,275 DEBUG Processing 393/1136 atomic regions from SNP 117725 to 118325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,289 DEBUG Processing 452/477 atomic regions from SNP 135381 to 135981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,396 DEBUG Processing 475/899 atomic regions from SNP 142330 to 142930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,426 DEBUG Processing 492/858 atomic regions from SNP 147349 to 147949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,484 DEBUG Processing 285/650 atomic regions from SNP 85226 to 85826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,547 DEBUG Processing 453/477 atomic regions from SNP 135681 to 136281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,554 DEBUG Processing 424/1025 atomic regions from SNP 126970 to 127570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,578 DEBUG Processing 394/1136 atomic regions from SNP 118025 to 118625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,639 DEBUG Processing 476/899 atomic regions from SNP 142630 to 143230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,676 DEBUG Processing 493/858 atomic regions from SNP 147649 to 148249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,734 DEBUG Processing 286/650 atomic regions from SNP 85526 to 86126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,794 DEBUG Processing 454/477 atomic regions from SNP 135981 to 136581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,839 DEBUG Processing 425/1025 atomic regions from SNP 127270 to 127870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,875 DEBUG Processing 395/1136 atomic regions from SNP 118325 to 118925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,879 DEBUG Processing 477/899 atomic regions from SNP 142930 to 143530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,913 DEBUG Processing 494/858 atomic regions from SNP 147949 to 148549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,976 DEBUG Processing 287/650 atomic regions from SNP 85826 to 86426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,026 DEBUG Processing 455/477 atomic regions from SNP 136281 to 136881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,121 DEBUG Processing 426/1025 atomic regions from SNP 127570 to 128170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,137 DEBUG Processing 478/899 atomic regions from SNP 143230 to 143830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,154 DEBUG Processing 495/858 atomic regions from SNP 148249 to 148849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,171 DEBUG Processing 396/1136 atomic regions from SNP 118625 to 119225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,216 DEBUG Processing 288/650 atomic regions from SNP 86126 to 86726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,253 DEBUG Processing 456/477 atomic regions from SNP 136581 to 137181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,394 DEBUG Processing 427/1025 atomic regions from SNP 127870 to 128470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,394 DEBUG Processing 496/858 atomic regions from SNP 148549 to 149149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,401 DEBUG Processing 479/899 atomic regions from SNP 143530 to 144130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,457 DEBUG Processing 397/1136 atomic regions from SNP 118925 to 119525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,458 DEBUG Processing 289/650 atomic regions from SNP 86426 to 87026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,479 DEBUG Processing 457/477 atomic regions from SNP 136881 to 137481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,632 DEBUG Processing 497/858 atomic regions from SNP 148849 to 149449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,670 DEBUG Processing 428/1025 atomic regions from SNP 128170 to 128770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,674 DEBUG Processing 480/899 atomic regions from SNP 143830 to 144430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,696 DEBUG Processing 290/650 atomic regions from SNP 86726 to 87326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,716 DEBUG Processing 458/477 atomic regions from SNP 137181 to 137781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,744 DEBUG Processing 398/1136 atomic regions from SNP 119225 to 119825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,875 DEBUG Processing 498/858 atomic regions from SNP 149149 to 149749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,936 DEBUG Processing 291/650 atomic regions from SNP 87026 to 87626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,942 DEBUG Processing 429/1025 atomic regions from SNP 128470 to 129070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,953 DEBUG Processing 459/477 atomic regions from SNP 137481 to 138081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,956 DEBUG Processing 481/899 atomic regions from SNP 144130 to 144730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,031 DEBUG Processing 399/1136 atomic regions from SNP 119525 to 120125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,116 DEBUG Processing 499/858 atomic regions from SNP 149449 to 150049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,175 DEBUG Processing 292/650 atomic regions from SNP 87326 to 87926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,190 DEBUG Processing 460/477 atomic regions from SNP 137781 to 138381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,213 DEBUG Processing 430/1025 atomic regions from SNP 128770 to 129370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,236 DEBUG Processing 482/899 atomic regions from SNP 144430 to 145030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,315 DEBUG Processing 400/1136 atomic regions from SNP 119825 to 120425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,360 DEBUG Processing 500/858 atomic regions from SNP 149749 to 150349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,422 DEBUG Processing 293/650 atomic regions from SNP 87626 to 88226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,422 DEBUG Processing 461/477 atomic regions from SNP 138081 to 138681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,481 DEBUG Processing 431/1025 atomic regions from SNP 129070 to 129670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,515 DEBUG Processing 483/899 atomic regions from SNP 144730 to 145330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,602 DEBUG Processing 501/858 atomic regions from SNP 150049 to 150649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,606 DEBUG Processing 401/1136 atomic regions from SNP 120125 to 120725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,660 DEBUG Processing 462/477 atomic regions from SNP 138381 to 138981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,665 DEBUG Processing 294/650 atomic regions from SNP 87926 to 88526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,748 DEBUG Processing 432/1025 atomic regions from SNP 129370 to 129970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,790 DEBUG Processing 484/899 atomic regions from SNP 145030 to 145630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,838 DEBUG Processing 502/858 atomic regions from SNP 150349 to 150949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,890 DEBUG Processing 402/1136 atomic regions from SNP 120425 to 121025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,897 DEBUG Processing 463/477 atomic regions from SNP 138681 to 139281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,909 DEBUG Processing 295/650 atomic regions from SNP 88226 to 88826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,020 DEBUG Processing 433/1025 atomic regions from SNP 129670 to 130270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,067 DEBUG Processing 485/899 atomic regions from SNP 145330 to 145930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,068 DEBUG Processing 503/858 atomic regions from SNP 150649 to 151249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,136 DEBUG Processing 464/477 atomic regions from SNP 138981 to 139581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,152 DEBUG Processing 296/650 atomic regions from SNP 88526 to 89126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,177 DEBUG Processing 403/1136 atomic regions from SNP 120725 to 121325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,288 DEBUG Processing 434/1025 atomic regions from SNP 129970 to 130570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,304 DEBUG Processing 504/858 atomic regions from SNP 150949 to 151549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,341 DEBUG Processing 486/899 atomic regions from SNP 145630 to 146230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,373 DEBUG Processing 465/477 atomic regions from SNP 139281 to 139881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,389 DEBUG Processing 297/650 atomic regions from SNP 88826 to 89426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,460 DEBUG Processing 404/1136 atomic regions from SNP 121025 to 121625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,542 DEBUG Processing 505/858 atomic regions from SNP 151249 to 151849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,593 DEBUG Processing 435/1025 atomic regions from SNP 130270 to 130870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,606 DEBUG Processing 466/477 atomic regions from SNP 139581 to 140181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,614 DEBUG Processing 487/899 atomic regions from SNP 145930 to 146530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,627 DEBUG Processing 298/650 atomic regions from SNP 89126 to 89726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,742 DEBUG Processing 405/1136 atomic regions from SNP 121325 to 121925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,782 DEBUG Processing 506/858 atomic regions from SNP 151549 to 152149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,851 DEBUG Processing 467/477 atomic regions from SNP 139881 to 140481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,871 DEBUG Processing 299/650 atomic regions from SNP 89426 to 90026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,874 DEBUG Processing 436/1025 atomic regions from SNP 130570 to 131170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,895 DEBUG Processing 488/899 atomic regions from SNP 146230 to 146830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,022 DEBUG Processing 507/858 atomic regions from SNP 151849 to 152449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,056 DEBUG Processing 406/1136 atomic regions from SNP 121625 to 122225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,091 DEBUG Processing 468/477 atomic regions from SNP 140181 to 140781 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,115 DEBUG Processing 300/650 atomic regions from SNP 89726 to 90326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,146 DEBUG Processing 437/1025 atomic regions from SNP 130870 to 131470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,182 DEBUG Processing 489/899 atomic regions from SNP 146530 to 147130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,273 DEBUG Processing 508/858 atomic regions from SNP 152149 to 152749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,331 DEBUG Processing 469/477 atomic regions from SNP 140481 to 141081 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,359 DEBUG Processing 407/1136 atomic regions from SNP 121925 to 122525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,359 DEBUG Processing 301/650 atomic regions from SNP 90026 to 90626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,418 DEBUG Processing 438/1025 atomic regions from SNP 131170 to 131770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,458 DEBUG Processing 490/899 atomic regions from SNP 146830 to 147430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,515 DEBUG Processing 509/858 atomic regions from SNP 152449 to 153049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,566 DEBUG Processing 470/477 atomic regions from SNP 140781 to 141381 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,597 DEBUG Processing 302/650 atomic regions from SNP 90326 to 90926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,651 DEBUG Processing 408/1136 atomic regions from SNP 122225 to 122825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,683 DEBUG Processing 439/1025 atomic regions from SNP 131470 to 132070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,730 DEBUG Processing 491/899 atomic regions from SNP 147130 to 147730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,758 DEBUG Processing 510/858 atomic regions from SNP 152749 to 153349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,800 DEBUG Processing 471/477 atomic regions from SNP 141081 to 141681 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,831 DEBUG Processing 303/650 atomic regions from SNP 90626 to 91226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,938 DEBUG Processing 409/1136 atomic regions from SNP 122525 to 123125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,949 DEBUG Processing 440/1025 atomic regions from SNP 131770 to 132370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,996 DEBUG Processing 511/858 atomic regions from SNP 153049 to 153649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,999 DEBUG Processing 492/899 atomic regions from SNP 147430 to 148030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,030 DEBUG Processing 472/477 atomic regions from SNP 141381 to 141981 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,070 DEBUG Processing 304/650 atomic regions from SNP 90926 to 91526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,221 DEBUG Processing 441/1025 atomic regions from SNP 132070 to 132670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,221 DEBUG Processing 410/1136 atomic regions from SNP 122825 to 123425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,236 DEBUG Processing 512/858 atomic regions from SNP 153349 to 153949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,263 DEBUG Processing 473/477 atomic regions from SNP 141681 to 142281 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,276 DEBUG Processing 493/899 atomic regions from SNP 147730 to 148330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,316 DEBUG Processing 305/650 atomic regions from SNP 91226 to 91826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,468 DEBUG Processing 513/858 atomic regions from SNP 153649 to 154249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,482 DEBUG Processing 442/1025 atomic regions from SNP 132370 to 132970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,493 DEBUG Processing 474/477 atomic regions from SNP 141981 to 142581 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,496 DEBUG Processing 411/1136 atomic regions from SNP 123125 to 123725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,552 DEBUG Processing 494/899 atomic regions from SNP 148030 to 148630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,563 DEBUG Processing 306/650 atomic regions from SNP 91526 to 92126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,692 DEBUG Processing 514/858 atomic regions from SNP 153949 to 154549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,719 DEBUG Processing 475/477 atomic regions from SNP 142281 to 142881 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,742 DEBUG Processing 443/1025 atomic regions from SNP 132670 to 133270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,767 DEBUG Processing 412/1136 atomic regions from SNP 123425 to 124025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,806 DEBUG Processing 307/650 atomic regions from SNP 91826 to 92426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,831 DEBUG Processing 495/899 atomic regions from SNP 148330 to 148930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,924 DEBUG Processing 515/858 atomic regions from SNP 154249 to 154849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,937 DEBUG Processing 476/477 atomic regions from SNP 142581 to 143181 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,999 DEBUG Processing 444/1025 atomic regions from SNP 132970 to 133570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,040 DEBUG Processing 413/1136 atomic regions from SNP 123725 to 124325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,045 DEBUG Processing 308/650 atomic regions from SNP 92126 to 92726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,113 DEBUG Processing 496/899 atomic regions from SNP 148630 to 149230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,155 DEBUG Processing 516/858 atomic regions from SNP 154549 to 155149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,163 DEBUG Processing 477/477 atomic regions from SNP 142881 to 143481 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,251 DEBUG Processing 445/1025 atomic regions from SNP 133270 to 133870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,276 DEBUG Processing 309/650 atomic regions from SNP 92426 to 93026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,287 DEBUG Unique SNPs positions in subchromosome 4: 143482 2025-01-31 09:45:26,311 DEBUG Processing 414/1136 atomic regions from SNP 124025 to 124625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,390 DEBUG Processing 517/858 atomic regions from SNP 154849 to 155449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,392 DEBUG Processing 497/899 atomic regions from SNP 148930 to 149530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,509 DEBUG Processing 446/1025 atomic regions from SNP 133570 to 134170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,510 DEBUG Processing 310/650 atomic regions from SNP 92726 to 93326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,588 DEBUG Processing 415/1136 atomic regions from SNP 124325 to 124925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,627 DEBUG Processing 518/858 atomic regions from SNP 155149 to 155749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,670 DEBUG Processing 498/899 atomic regions from SNP 149230 to 149830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,705 DEBUG Subchromosome time: 149.12713664025068, subchromosome SNPs: 143482 2025-01-31 09:45:26,723 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:26,748 DEBUG Processing 311/650 atomic regions from SNP 93026 to 93626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,767 DEBUG Processing 447/1025 atomic regions from SNP 133870 to 134470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,862 DEBUG Processing 519/858 atomic regions from SNP 155449 to 156049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,867 DEBUG Processing 416/1136 atomic regions from SNP 124625 to 125225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,919 DEBUG Processing 499/899 atomic regions from SNP 149530 to 150130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,991 DEBUG Processing 312/650 atomic regions from SNP 93326 to 93926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,029 DEBUG Processing 448/1025 atomic regions from SNP 134170 to 134770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,099 DEBUG Processing 520/858 atomic regions from SNP 155749 to 156349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,165 DEBUG Processing 500/899 atomic regions from SNP 149830 to 150430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,172 DEBUG Processing 417/1136 atomic regions from SNP 124925 to 125525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,233 DEBUG Processing 313/650 atomic regions from SNP 93626 to 94226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,292 DEBUG Processing 449/1025 atomic regions from SNP 134470 to 135070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,334 DEBUG Processing 521/858 atomic regions from SNP 156049 to 156649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,410 DEBUG Processing 501/899 atomic regions from SNP 150130 to 150730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,475 DEBUG Processing 314/650 atomic regions from SNP 93926 to 94526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,476 DEBUG Processing 418/1136 atomic regions from SNP 125225 to 125825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,559 DEBUG Processing 450/1025 atomic regions from SNP 134770 to 135370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,568 DEBUG Processing 522/858 atomic regions from SNP 156349 to 156949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,658 DEBUG Processing 502/899 atomic regions from SNP 150430 to 151030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,722 DEBUG Processing 315/650 atomic regions from SNP 94226 to 94826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,786 DEBUG Processing 419/1136 atomic regions from SNP 125525 to 126125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,813 DEBUG Processing 523/858 atomic regions from SNP 156649 to 157249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,824 DEBUG Processing 451/1025 atomic regions from SNP 135070 to 135670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,904 DEBUG Processing 503/899 atomic regions from SNP 150730 to 151330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,962 DEBUG Processing 316/650 atomic regions from SNP 94526 to 95126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,050 DEBUG Processing 524/858 atomic regions from SNP 156949 to 157549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,088 DEBUG Processing 452/1025 atomic regions from SNP 135370 to 135970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,094 DEBUG Processing 420/1136 atomic regions from SNP 125825 to 126425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,149 DEBUG Processing 504/899 atomic regions from SNP 151030 to 151630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,205 DEBUG Processing 317/650 atomic regions from SNP 94826 to 95426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,284 DEBUG Processing 525/858 atomic regions from SNP 157249 to 157849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,350 DEBUG Processing 453/1025 atomic regions from SNP 135670 to 136270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,387 DEBUG Processing 505/899 atomic regions from SNP 151330 to 151930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,397 DEBUG Processing 421/1136 atomic regions from SNP 126125 to 126725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,446 DEBUG Processing 318/650 atomic regions from SNP 95126 to 95726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,525 DEBUG Processing 526/858 atomic regions from SNP 157549 to 158149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,612 DEBUG Processing 454/1025 atomic regions from SNP 135970 to 136570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,626 DEBUG Processing 506/899 atomic regions from SNP 151630 to 152230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,687 DEBUG Processing 319/650 atomic regions from SNP 95426 to 96026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,703 DEBUG Processing 422/1136 atomic regions from SNP 126425 to 127025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,777 DEBUG Processing 527/858 atomic regions from SNP 157849 to 158449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,871 DEBUG Processing 507/899 atomic regions from SNP 151930 to 152530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,875 DEBUG Processing 455/1025 atomic regions from SNP 136270 to 136870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,924 DEBUG Processing 320/650 atomic regions from SNP 95726 to 96326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,014 DEBUG Processing 423/1136 atomic regions from SNP 126725 to 127325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,027 DEBUG Processing 528/858 atomic regions from SNP 158149 to 158749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,133 DEBUG Processing 508/899 atomic regions from SNP 152230 to 152830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,143 DEBUG Processing 456/1025 atomic regions from SNP 136570 to 137170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,180 DEBUG Processing 321/650 atomic regions from SNP 96026 to 96626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,299 DEBUG Processing 529/858 atomic regions from SNP 158449 to 159049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,378 DEBUG Processing 424/1136 atomic regions from SNP 127025 to 127625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,485 DEBUG Processing 509/899 atomic regions from SNP 152530 to 153130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,509 DEBUG Processing 457/1025 atomic regions from SNP 136870 to 137470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,509 DEBUG Processing 322/650 atomic regions from SNP 96326 to 96926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,619 DEBUG Processing 530/858 atomic regions from SNP 158749 to 159349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,772 DEBUG Processing 425/1136 atomic regions from SNP 127325 to 127925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,857 DEBUG Processing 510/899 atomic regions from SNP 152830 to 153430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,890 DEBUG Processing 323/650 atomic regions from SNP 96626 to 97226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,915 DEBUG Processing 458/1025 atomic regions from SNP 137170 to 137770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,984 DEBUG Processing 531/858 atomic regions from SNP 159049 to 159649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,193 DEBUG Processing 426/1136 atomic regions from SNP 127625 to 128225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,241 DEBUG Processing 511/899 atomic regions from SNP 153130 to 153730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,292 DEBUG Processing 324/650 atomic regions from SNP 96926 to 97526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,320 DEBUG Processing 459/1025 atomic regions from SNP 137470 to 138070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,379 DEBUG Processing 532/858 atomic regions from SNP 159349 to 159949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,633 DEBUG Processing 427/1136 atomic regions from SNP 127925 to 128525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,654 DEBUG Processing 512/899 atomic regions from SNP 153430 to 154030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,708 DEBUG Processing 325/650 atomic regions from SNP 97226 to 97826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,733 DEBUG Processing 460/1025 atomic regions from SNP 137770 to 138370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,742 DEBUG Processing 533/858 atomic regions from SNP 159649 to 160249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,905 DEBUG Processing 513/899 atomic regions from SNP 153730 to 154330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,917 DEBUG Processing 428/1136 atomic regions from SNP 128225 to 128825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,965 DEBUG Processing 326/650 atomic regions from SNP 97526 to 98126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,998 DEBUG Processing 534/858 atomic regions from SNP 159949 to 160549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,023 DEBUG Processing 461/1025 atomic regions from SNP 138070 to 138670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,149 DEBUG Processing 514/899 atomic regions from SNP 154030 to 154630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,202 DEBUG Processing 429/1136 atomic regions from SNP 128525 to 129125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,214 DEBUG Processing 327/650 atomic regions from SNP 97826 to 98426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,245 DEBUG Processing 535/858 atomic regions from SNP 160249 to 160849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,298 DEBUG Processing 462/1025 atomic regions from SNP 138370 to 138970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,395 DEBUG Processing 515/899 atomic regions from SNP 154330 to 154930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,467 DEBUG Processing 328/650 atomic regions from SNP 98126 to 98726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,490 DEBUG Processing 536/858 atomic regions from SNP 160549 to 161149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,498 DEBUG Processing 430/1136 atomic regions from SNP 128825 to 129425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,578 DEBUG Processing 463/1025 atomic regions from SNP 138670 to 139270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,731 DEBUG Processing 516/899 atomic regions from SNP 154630 to 155230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,790 DEBUG Processing 329/650 atomic regions from SNP 98426 to 99026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,803 DEBUG Processing 537/858 atomic regions from SNP 160849 to 161449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,847 DEBUG Processing 431/1136 atomic regions from SNP 129125 to 129725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,895 DEBUG Processing 464/1025 atomic regions from SNP 138970 to 139570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,075 DEBUG Processing 517/899 atomic regions from SNP 154930 to 155530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,142 DEBUG Processing 330/650 atomic regions from SNP 98726 to 99326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,149 DEBUG Processing 538/858 atomic regions from SNP 161149 to 161749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,205 DEBUG Processing 432/1136 atomic regions from SNP 129425 to 130025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,234 DEBUG Processing 465/1025 atomic regions from SNP 139270 to 139870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,442 DEBUG Processing 518/899 atomic regions from SNP 155230 to 155830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,523 DEBUG Processing 539/858 atomic regions from SNP 161449 to 162049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,526 DEBUG Processing 331/650 atomic regions from SNP 99026 to 99626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,603 DEBUG Processing 433/1136 atomic regions from SNP 129725 to 130325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,629 DEBUG Processing 466/1025 atomic regions from SNP 139570 to 140170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,767 DEBUG Processing 519/899 atomic regions from SNP 155530 to 156130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,830 DEBUG Processing 540/858 atomic regions from SNP 161749 to 162349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,839 DEBUG Processing 332/650 atomic regions from SNP 99326 to 99926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,918 DEBUG Processing 434/1136 atomic regions from SNP 130025 to 130625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,942 DEBUG Processing 467/1025 atomic regions from SNP 139870 to 140470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,060 DEBUG Processing 520/899 atomic regions from SNP 155830 to 156430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,076 DEBUG Processing 541/858 atomic regions from SNP 162049 to 162649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,096 DEBUG Processing 333/650 atomic regions from SNP 99626 to 100226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,227 DEBUG Processing 435/1136 atomic regions from SNP 130325 to 130925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,241 DEBUG Processing 468/1025 atomic regions from SNP 140170 to 140770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,315 DEBUG Processing 542/858 atomic regions from SNP 162349 to 162949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,336 DEBUG Processing 334/650 atomic regions from SNP 99926 to 100526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,347 DEBUG Processing 521/899 atomic regions from SNP 156130 to 156730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,518 DEBUG Processing 436/1136 atomic regions from SNP 130625 to 131225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,522 DEBUG Processing 469/1025 atomic regions from SNP 140470 to 141070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,602 DEBUG Processing 543/858 atomic regions from SNP 162649 to 163249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,613 DEBUG Processing 335/650 atomic regions from SNP 100226 to 100826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,670 DEBUG Processing 522/899 atomic regions from SNP 156430 to 157030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,806 DEBUG Processing 470/1025 atomic regions from SNP 140770 to 141370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,814 DEBUG Processing 437/1136 atomic regions from SNP 130925 to 131525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,845 DEBUG Processing 544/858 atomic regions from SNP 162949 to 163549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,859 DEBUG Processing 336/650 atomic regions from SNP 100526 to 101126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,943 DEBUG Processing 523/899 atomic regions from SNP 156730 to 157330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,093 DEBUG Processing 471/1025 atomic regions from SNP 141070 to 141670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,109 DEBUG Processing 337/650 atomic regions from SNP 100826 to 101426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,113 DEBUG Processing 438/1136 atomic regions from SNP 131225 to 131825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,120 DEBUG Processing 545/858 atomic regions from SNP 163249 to 163849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,230 DEBUG Processing 524/899 atomic regions from SNP 157030 to 157630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,358 DEBUG Processing 338/650 atomic regions from SNP 101126 to 101726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,369 DEBUG Processing 472/1025 atomic regions from SNP 141370 to 141970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,374 DEBUG Processing 546/858 atomic regions from SNP 163549 to 164149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,400 DEBUG Processing 439/1136 atomic regions from SNP 131525 to 132125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,511 DEBUG Processing 525/899 atomic regions from SNP 157330 to 157930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,608 DEBUG Processing 339/650 atomic regions from SNP 101426 to 102026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,644 DEBUG Processing 547/858 atomic regions from SNP 163849 to 164449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,653 DEBUG Processing 473/1025 atomic regions from SNP 141670 to 142270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,694 DEBUG Processing 440/1136 atomic regions from SNP 131825 to 132425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,796 DEBUG Processing 526/899 atomic regions from SNP 157630 to 158230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,854 DEBUG Processing 340/650 atomic regions from SNP 101726 to 102326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,891 DEBUG Processing 548/858 atomic regions from SNP 164149 to 164749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,929 DEBUG Processing 474/1025 atomic regions from SNP 141970 to 142570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,978 DEBUG Processing 441/1136 atomic regions from SNP 132125 to 132725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,067 DEBUG Processing 527/899 atomic regions from SNP 157930 to 158530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,100 DEBUG Processing 341/650 atomic regions from SNP 102026 to 102626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,138 DEBUG Processing 549/858 atomic regions from SNP 164449 to 165049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,203 DEBUG Processing 475/1025 atomic regions from SNP 142270 to 142870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,259 DEBUG Processing 442/1136 atomic regions from SNP 132425 to 133025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,315 DEBUG Segmenting atomic regions: 2025-01-31 09:45:35,345 DEBUG Processing 528/899 atomic regions from SNP 158230 to 158830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,345 DEBUG Processing 342/650 atomic regions from SNP 102326 to 102926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,384 DEBUG Processing 550/858 atomic regions from SNP 164749 to 165349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,426 DEBUG Processing 1/236 atomic regions from SNP 0 to 601 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,475 DEBUG Processing 476/1025 atomic regions from SNP 142570 to 143170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,538 DEBUG Processing 443/1136 atomic regions from SNP 132725 to 133325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,587 DEBUG Processing 343/650 atomic regions from SNP 102626 to 103226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,628 DEBUG Processing 529/899 atomic regions from SNP 158530 to 159130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,630 DEBUG Processing 551/858 atomic regions from SNP 165049 to 165649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,665 DEBUG Processing 2/236 atomic regions from SNP 301 to 902 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,745 DEBUG Processing 477/1025 atomic regions from SNP 142870 to 143470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,815 DEBUG Processing 444/1136 atomic regions from SNP 133025 to 133625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,829 DEBUG Processing 344/650 atomic regions from SNP 102926 to 103526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,875 DEBUG Processing 552/858 atomic regions from SNP 165349 to 165949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,897 DEBUG Processing 3/236 atomic regions from SNP 602 to 1203 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,916 DEBUG Processing 530/899 atomic regions from SNP 158830 to 159430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,011 DEBUG Processing 478/1025 atomic regions from SNP 143170 to 143770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,063 DEBUG Processing 345/650 atomic regions from SNP 103226 to 103826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,089 DEBUG Processing 445/1136 atomic regions from SNP 133325 to 133925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,119 DEBUG Processing 553/858 atomic regions from SNP 165649 to 166249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,124 DEBUG Processing 4/236 atomic regions from SNP 903 to 1504 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,192 DEBUG Processing 531/899 atomic regions from SNP 159130 to 159730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,277 DEBUG Processing 479/1025 atomic regions from SNP 143470 to 144070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,296 DEBUG Processing 346/650 atomic regions from SNP 103526 to 104126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,355 DEBUG Processing 5/236 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,360 DEBUG Processing 554/858 atomic regions from SNP 165949 to 166549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,366 DEBUG Processing 446/1136 atomic regions from SNP 133625 to 134225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,457 DEBUG Processing 532/899 atomic regions from SNP 159430 to 160030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,529 DEBUG Processing 347/650 atomic regions from SNP 103826 to 104426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,545 DEBUG Processing 480/1025 atomic regions from SNP 143770 to 144370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,586 DEBUG Processing 6/236 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,600 DEBUG Processing 555/858 atomic regions from SNP 166249 to 166849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,648 DEBUG Processing 447/1136 atomic regions from SNP 133925 to 134525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,726 DEBUG Processing 533/899 atomic regions from SNP 159730 to 160330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,763 DEBUG Processing 348/650 atomic regions from SNP 104126 to 104726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,809 DEBUG Processing 481/1025 atomic regions from SNP 144070 to 144670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,818 DEBUG Processing 7/236 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,833 DEBUG Processing 556/858 atomic regions from SNP 166549 to 167149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,929 DEBUG Processing 448/1136 atomic regions from SNP 134225 to 134825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,991 DEBUG Processing 534/899 atomic regions from SNP 160030 to 160630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,004 DEBUG Processing 349/650 atomic regions from SNP 104426 to 105026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,043 DEBUG Processing 8/236 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,064 DEBUG Processing 557/858 atomic regions from SNP 166849 to 167449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,067 DEBUG Processing 482/1025 atomic regions from SNP 144370 to 144970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,212 DEBUG Processing 449/1136 atomic regions from SNP 134525 to 135125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,250 DEBUG Processing 535/899 atomic regions from SNP 160330 to 160930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,254 DEBUG Processing 350/650 atomic regions from SNP 104726 to 105326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,275 DEBUG Processing 9/236 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,303 DEBUG Processing 558/858 atomic regions from SNP 167149 to 167749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,327 DEBUG Processing 483/1025 atomic regions from SNP 144670 to 145270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,492 DEBUG Processing 450/1136 atomic regions from SNP 134825 to 135425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,502 DEBUG Processing 351/650 atomic regions from SNP 105026 to 105626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,504 DEBUG Processing 10/236 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,531 DEBUG Processing 536/899 atomic regions from SNP 160630 to 161230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,546 DEBUG Processing 559/858 atomic regions from SNP 167449 to 168049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,585 DEBUG Processing 484/1025 atomic regions from SNP 144970 to 145570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,735 DEBUG Processing 11/236 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,749 DEBUG Processing 352/650 atomic regions from SNP 105326 to 105926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,773 DEBUG Processing 451/1136 atomic regions from SNP 135125 to 135725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,796 DEBUG Processing 560/858 atomic regions from SNP 167749 to 168349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,812 DEBUG Processing 537/899 atomic regions from SNP 160930 to 161530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,855 DEBUG Processing 485/1025 atomic regions from SNP 145270 to 145870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,958 DEBUG Processing 12/236 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,993 DEBUG Processing 353/650 atomic regions from SNP 105626 to 106226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,040 DEBUG Processing 561/858 atomic regions from SNP 168049 to 168649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,047 DEBUG Processing 452/1136 atomic regions from SNP 135425 to 136025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,083 DEBUG Processing 538/899 atomic regions from SNP 161230 to 161830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,129 DEBUG Processing 486/1025 atomic regions from SNP 145570 to 146170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,187 DEBUG Processing 13/236 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,235 DEBUG Processing 354/650 atomic regions from SNP 105926 to 106526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,280 DEBUG Processing 562/858 atomic regions from SNP 168349 to 168949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,318 DEBUG Processing 453/1136 atomic regions from SNP 135725 to 136325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,352 DEBUG Processing 539/899 atomic regions from SNP 161530 to 162130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,425 DEBUG Processing 14/236 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,431 DEBUG Processing 487/1025 atomic regions from SNP 145870 to 146470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,477 DEBUG Processing 355/650 atomic regions from SNP 106226 to 106826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,518 DEBUG Processing 563/858 atomic regions from SNP 168649 to 169249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,585 DEBUG Processing 454/1136 atomic regions from SNP 136025 to 136625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,618 DEBUG Processing 540/899 atomic regions from SNP 161830 to 162430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,670 DEBUG Processing 15/236 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,719 DEBUG Processing 356/650 atomic regions from SNP 106526 to 107126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,751 DEBUG Processing 488/1025 atomic regions from SNP 146170 to 146770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,765 DEBUG Processing 564/858 atomic regions from SNP 168949 to 169549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,847 DEBUG Processing 455/1136 atomic regions from SNP 136325 to 136925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,864 DEBUG Processing 541/899 atomic regions from SNP 162130 to 162730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,911 DEBUG Processing 16/236 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,959 DEBUG Processing 357/650 atomic regions from SNP 106826 to 107426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,031 DEBUG Processing 565/858 atomic regions from SNP 169249 to 169849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,057 DEBUG Processing 489/1025 atomic regions from SNP 146470 to 147070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,115 DEBUG Processing 456/1136 atomic regions from SNP 136625 to 137225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,116 DEBUG Processing 542/899 atomic regions from SNP 162430 to 163030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,146 DEBUG Processing 17/236 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,197 DEBUG Processing 358/650 atomic regions from SNP 107126 to 107726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,297 DEBUG Processing 566/858 atomic regions from SNP 169549 to 170149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,349 DEBUG Processing 490/1025 atomic regions from SNP 146770 to 147370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,370 DEBUG Processing 543/899 atomic regions from SNP 162730 to 163330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,376 DEBUG Processing 18/236 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,392 DEBUG Processing 457/1136 atomic regions from SNP 136925 to 137525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,440 DEBUG Processing 359/650 atomic regions from SNP 107426 to 108026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,570 DEBUG Processing 567/858 atomic regions from SNP 169849 to 170449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,614 DEBUG Processing 19/236 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,624 DEBUG Processing 491/1025 atomic regions from SNP 147070 to 147670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,640 DEBUG Processing 544/899 atomic regions from SNP 163030 to 163630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,676 DEBUG Processing 458/1136 atomic regions from SNP 137225 to 137825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,688 DEBUG Processing 360/650 atomic regions from SNP 107726 to 108326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,826 DEBUG Processing 568/858 atomic regions from SNP 170149 to 170749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,856 DEBUG Processing 20/236 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,896 DEBUG Processing 545/899 atomic regions from SNP 163330 to 163930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,903 DEBUG Processing 492/1025 atomic regions from SNP 147370 to 147970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,937 DEBUG Processing 361/650 atomic regions from SNP 108026 to 108626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,963 DEBUG Processing 459/1136 atomic regions from SNP 137525 to 138125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,068 DEBUG Processing 569/858 atomic regions from SNP 170449 to 171049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,091 DEBUG Processing 21/236 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,147 DEBUG Processing 546/899 atomic regions from SNP 163630 to 164230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,181 DEBUG Processing 493/1025 atomic regions from SNP 147670 to 148270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,182 DEBUG Processing 362/650 atomic regions from SNP 108326 to 108926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,250 DEBUG Processing 460/1136 atomic regions from SNP 137825 to 138425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,314 DEBUG Processing 570/858 atomic regions from SNP 170749 to 171349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,323 DEBUG Processing 22/236 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,392 DEBUG Processing 547/899 atomic regions from SNP 163930 to 164530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,429 DEBUG Processing 363/650 atomic regions from SNP 108626 to 109226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,456 DEBUG Processing 494/1025 atomic regions from SNP 147970 to 148570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,542 DEBUG Processing 461/1136 atomic regions from SNP 138125 to 138725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,560 DEBUG Processing 23/236 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,565 DEBUG Processing 571/858 atomic regions from SNP 171049 to 171649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,644 DEBUG Processing 548/899 atomic regions from SNP 164230 to 164830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,690 DEBUG Processing 364/650 atomic regions from SNP 108926 to 109526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,736 DEBUG Processing 495/1025 atomic regions from SNP 148270 to 148870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,810 DEBUG Processing 24/236 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,820 DEBUG Processing 572/858 atomic regions from SNP 171349 to 171949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,841 DEBUG Processing 462/1136 atomic regions from SNP 138425 to 139025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,897 DEBUG Processing 549/899 atomic regions from SNP 164530 to 165130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,953 DEBUG Processing 365/650 atomic regions from SNP 109226 to 109826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,012 DEBUG Processing 496/1025 atomic regions from SNP 148570 to 149170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,063 DEBUG Processing 25/236 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,073 DEBUG Processing 573/858 atomic regions from SNP 171649 to 172249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,138 DEBUG Processing 463/1136 atomic regions from SNP 138725 to 139325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,158 DEBUG Processing 550/899 atomic regions from SNP 164830 to 165430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,222 DEBUG Processing 366/650 atomic regions from SNP 109526 to 110126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,286 DEBUG Processing 497/1025 atomic regions from SNP 148870 to 149470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,308 DEBUG Processing 26/236 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,319 DEBUG Processing 574/858 atomic regions from SNP 171949 to 172549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,432 DEBUG Processing 464/1136 atomic regions from SNP 139025 to 139625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,434 DEBUG Processing 551/899 atomic regions from SNP 165130 to 165730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,492 DEBUG Processing 367/650 atomic regions from SNP 109826 to 110426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,542 DEBUG Processing 27/236 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,556 DEBUG Processing 498/1025 atomic regions from SNP 149170 to 149770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,569 DEBUG Processing 575/858 atomic regions from SNP 172249 to 172849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,714 DEBUG Processing 552/899 atomic regions from SNP 165430 to 166030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,727 DEBUG Processing 465/1136 atomic regions from SNP 139325 to 139925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,758 DEBUG Processing 368/650 atomic regions from SNP 110126 to 110726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,774 DEBUG Processing 28/236 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,822 DEBUG Processing 499/1025 atomic regions from SNP 149470 to 150070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,828 DEBUG Processing 576/858 atomic regions from SNP 172549 to 173149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,970 DEBUG Processing 553/899 atomic regions from SNP 165730 to 166330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,013 DEBUG Processing 29/236 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,016 DEBUG Processing 369/650 atomic regions from SNP 110426 to 111026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,019 DEBUG Processing 466/1136 atomic regions from SNP 139625 to 140225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,085 DEBUG Processing 577/858 atomic regions from SNP 172849 to 173449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,094 DEBUG Processing 500/1025 atomic regions from SNP 149770 to 150370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,241 DEBUG Processing 554/899 atomic regions from SNP 166030 to 166630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,257 DEBUG Processing 30/236 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,281 DEBUG Processing 370/650 atomic regions from SNP 110726 to 111326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,314 DEBUG Processing 467/1136 atomic regions from SNP 139925 to 140525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,333 DEBUG Processing 578/858 atomic regions from SNP 173149 to 173749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,368 DEBUG Processing 501/1025 atomic regions from SNP 150070 to 150670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,494 DEBUG Processing 31/236 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,517 DEBUG Processing 555/899 atomic regions from SNP 166330 to 166930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,556 DEBUG Processing 371/650 atomic regions from SNP 111026 to 111626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,580 DEBUG Processing 579/858 atomic regions from SNP 173449 to 174049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,613 DEBUG Processing 468/1136 atomic regions from SNP 140225 to 140825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,650 DEBUG Processing 502/1025 atomic regions from SNP 150370 to 150970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,732 DEBUG Processing 32/236 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,798 DEBUG Processing 556/899 atomic regions from SNP 166630 to 167230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,836 DEBUG Processing 580/858 atomic regions from SNP 173749 to 174349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,839 DEBUG Processing 372/650 atomic regions from SNP 111326 to 111926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,915 DEBUG Processing 469/1136 atomic regions from SNP 140525 to 141125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,936 DEBUG Processing 503/1025 atomic regions from SNP 150670 to 151270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,965 DEBUG Processing 33/236 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,076 DEBUG Processing 557/899 atomic regions from SNP 166930 to 167530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,084 DEBUG Processing 581/858 atomic regions from SNP 174049 to 174649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,111 DEBUG Processing 373/650 atomic regions from SNP 111626 to 112226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,207 DEBUG Processing 34/236 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,223 DEBUG Processing 504/1025 atomic regions from SNP 150970 to 151570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,239 DEBUG Processing 470/1136 atomic regions from SNP 140825 to 141425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,334 DEBUG Processing 582/858 atomic regions from SNP 174349 to 174949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,370 DEBUG Processing 558/899 atomic regions from SNP 167230 to 167830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,372 DEBUG Processing 374/650 atomic regions from SNP 111926 to 112526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,456 DEBUG Processing 35/236 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,512 DEBUG Processing 505/1025 atomic regions from SNP 151270 to 151870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,549 DEBUG Processing 471/1136 atomic regions from SNP 141125 to 141725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,589 DEBUG Processing 583/858 atomic regions from SNP 174649 to 175249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,636 DEBUG Processing 375/650 atomic regions from SNP 112226 to 112826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,663 DEBUG Processing 559/899 atomic regions from SNP 167530 to 168130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,690 DEBUG Processing 36/236 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,796 DEBUG Processing 506/1025 atomic regions from SNP 151570 to 152170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,839 DEBUG Processing 584/858 atomic regions from SNP 174949 to 175549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,841 DEBUG Processing 472/1136 atomic regions from SNP 141425 to 142025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,889 DEBUG Processing 376/650 atomic regions from SNP 112526 to 113126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,912 DEBUG Processing 37/236 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,931 DEBUG Processing 560/899 atomic regions from SNP 167830 to 168430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,079 DEBUG Processing 507/1025 atomic regions from SNP 151870 to 152470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,086 DEBUG Processing 585/858 atomic regions from SNP 175249 to 175849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,132 DEBUG Processing 473/1136 atomic regions from SNP 141725 to 142325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,135 DEBUG Processing 377/650 atomic regions from SNP 112826 to 113426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,141 DEBUG Processing 38/236 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,190 DEBUG Processing 561/899 atomic regions from SNP 168130 to 168730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,337 DEBUG Processing 586/858 atomic regions from SNP 175549 to 176149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,361 DEBUG Processing 508/1025 atomic regions from SNP 152170 to 152770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,378 DEBUG Processing 39/236 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,382 DEBUG Processing 378/650 atomic regions from SNP 113126 to 113726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,423 DEBUG Processing 474/1136 atomic regions from SNP 142025 to 142625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,459 DEBUG Processing 562/899 atomic regions from SNP 168430 to 169030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,586 DEBUG Processing 587/858 atomic regions from SNP 175849 to 176449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,620 DEBUG Processing 40/236 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,629 DEBUG Processing 379/650 atomic regions from SNP 113426 to 114026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,643 DEBUG Processing 509/1025 atomic regions from SNP 152470 to 153070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,713 DEBUG Processing 475/1136 atomic regions from SNP 142325 to 142925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,731 DEBUG Processing 563/899 atomic regions from SNP 168730 to 169330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,831 DEBUG Processing 588/858 atomic regions from SNP 176149 to 176749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,846 DEBUG Processing 41/236 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,877 DEBUG Processing 380/650 atomic regions from SNP 113726 to 114326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,914 DEBUG Processing 510/1025 atomic regions from SNP 152770 to 153370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,979 DEBUG Processing 564/899 atomic regions from SNP 169030 to 169630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,999 DEBUG Processing 476/1136 atomic regions from SNP 142625 to 143225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,065 DEBUG Processing 42/236 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,076 DEBUG Processing 589/858 atomic regions from SNP 176449 to 177049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,131 DEBUG Processing 381/650 atomic regions from SNP 114026 to 114626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,190 DEBUG Processing 511/1025 atomic regions from SNP 153070 to 153670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,227 DEBUG Processing 565/899 atomic regions from SNP 169330 to 169930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,291 DEBUG Processing 43/236 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,291 DEBUG Processing 477/1136 atomic regions from SNP 142925 to 143525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,324 DEBUG Processing 590/858 atomic regions from SNP 176749 to 177349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,385 DEBUG Processing 382/650 atomic regions from SNP 114326 to 114926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,466 DEBUG Processing 512/1025 atomic regions from SNP 153370 to 153970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,482 DEBUG Processing 566/899 atomic regions from SNP 169630 to 170230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,529 DEBUG Processing 44/236 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,572 DEBUG Processing 591/858 atomic regions from SNP 177049 to 177649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,580 DEBUG Processing 478/1136 atomic regions from SNP 143225 to 143825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,622 DEBUG Processing 383/650 atomic regions from SNP 114626 to 115226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,742 DEBUG Processing 513/1025 atomic regions from SNP 153670 to 154270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,748 DEBUG Processing 567/899 atomic regions from SNP 169930 to 170530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,772 DEBUG Processing 45/236 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,817 DEBUG Processing 592/858 atomic regions from SNP 177349 to 177949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,859 DEBUG Processing 384/650 atomic regions from SNP 114926 to 115526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,869 DEBUG Processing 479/1136 atomic regions from SNP 143525 to 144125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,012 DEBUG Processing 46/236 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,016 DEBUG Processing 514/1025 atomic regions from SNP 153970 to 154570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,028 DEBUG Processing 568/899 atomic regions from SNP 170230 to 170830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,071 DEBUG Processing 593/858 atomic regions from SNP 177649 to 178249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,105 DEBUG Processing 385/650 atomic regions from SNP 115226 to 115826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,155 DEBUG Processing 480/1136 atomic regions from SNP 143825 to 144425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,242 DEBUG Processing 47/236 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,289 DEBUG Processing 515/1025 atomic regions from SNP 154270 to 154870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,304 DEBUG Processing 569/899 atomic regions from SNP 170530 to 171130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,329 DEBUG Processing 594/858 atomic regions from SNP 177949 to 178549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,359 DEBUG Processing 386/650 atomic regions from SNP 115526 to 116126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,444 DEBUG Processing 481/1136 atomic regions from SNP 144125 to 144725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,482 DEBUG Processing 48/236 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,560 DEBUG Processing 516/1025 atomic regions from SNP 154570 to 155170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,581 DEBUG Processing 570/899 atomic regions from SNP 170830 to 171430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,604 DEBUG Processing 595/858 atomic regions from SNP 178249 to 178849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,611 DEBUG Processing 387/650 atomic regions from SNP 115826 to 116426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,733 DEBUG Processing 49/236 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,745 DEBUG Processing 482/1136 atomic regions from SNP 144425 to 145025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,830 DEBUG Processing 517/1025 atomic regions from SNP 154870 to 155470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,853 DEBUG Processing 596/858 atomic regions from SNP 178549 to 179149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,861 DEBUG Processing 388/650 atomic regions from SNP 116126 to 116726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,863 DEBUG Processing 571/899 atomic regions from SNP 171130 to 171730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,968 DEBUG Processing 50/236 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,057 DEBUG Processing 483/1136 atomic regions from SNP 144725 to 145325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,098 DEBUG Processing 597/858 atomic regions from SNP 178849 to 179449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,102 DEBUG Processing 518/1025 atomic regions from SNP 155170 to 155770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,110 DEBUG Processing 389/650 atomic regions from SNP 116426 to 117026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,139 DEBUG Processing 572/899 atomic regions from SNP 171430 to 172030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,200 DEBUG Processing 51/236 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,347 DEBUG Processing 598/858 atomic regions from SNP 179149 to 179749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,360 DEBUG Processing 390/650 atomic regions from SNP 116726 to 117326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,367 DEBUG Processing 484/1136 atomic regions from SNP 145025 to 145625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,378 DEBUG Processing 519/1025 atomic regions from SNP 155470 to 156070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,420 DEBUG Processing 573/899 atomic regions from SNP 171730 to 172330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,433 DEBUG Processing 52/236 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,595 DEBUG Processing 599/858 atomic regions from SNP 179449 to 180049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,611 DEBUG Processing 391/650 atomic regions from SNP 117026 to 117626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,658 DEBUG Processing 485/1136 atomic regions from SNP 145325 to 145925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,671 DEBUG Processing 520/1025 atomic regions from SNP 155770 to 156370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,673 DEBUG Processing 53/236 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,678 DEBUG Processing 574/899 atomic regions from SNP 172030 to 172630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,835 DEBUG Processing 600/858 atomic regions from SNP 179749 to 180349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,856 DEBUG Processing 392/650 atomic regions from SNP 117326 to 117926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,914 DEBUG Processing 54/236 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,945 DEBUG Processing 575/899 atomic regions from SNP 172330 to 172930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,966 DEBUG Processing 486/1136 atomic regions from SNP 145625 to 146225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,981 DEBUG Processing 521/1025 atomic regions from SNP 156070 to 156670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,080 DEBUG Processing 601/858 atomic regions from SNP 180049 to 180649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,098 DEBUG Processing 393/650 atomic regions from SNP 117626 to 118226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,141 DEBUG Processing 55/236 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,214 DEBUG Processing 576/899 atomic regions from SNP 172630 to 173230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,281 DEBUG Processing 487/1136 atomic regions from SNP 145925 to 146525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,297 DEBUG Processing 522/1025 atomic regions from SNP 156370 to 156970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,351 DEBUG Processing 394/650 atomic regions from SNP 117926 to 118526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,361 DEBUG Processing 602/858 atomic regions from SNP 180349 to 180949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,363 DEBUG Processing 56/236 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,474 DEBUG Processing 577/899 atomic regions from SNP 172930 to 173530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,594 DEBUG Processing 57/236 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,604 DEBUG Processing 523/1025 atomic regions from SNP 156670 to 157270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,608 DEBUG Processing 488/1136 atomic regions from SNP 146225 to 146825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,616 DEBUG Processing 395/650 atomic regions from SNP 118226 to 118826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,640 DEBUG Processing 603/858 atomic regions from SNP 180649 to 181249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,747 DEBUG Processing 578/899 atomic regions from SNP 173230 to 173830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,831 DEBUG Processing 58/236 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,871 DEBUG Processing 396/650 atomic regions from SNP 118526 to 119126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,892 DEBUG Processing 524/1025 atomic regions from SNP 156970 to 157570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,912 DEBUG Processing 604/858 atomic regions from SNP 180949 to 181549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,931 DEBUG Processing 489/1136 atomic regions from SNP 146525 to 147125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,022 DEBUG Processing 579/899 atomic regions from SNP 173530 to 174130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,072 DEBUG Processing 59/236 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,120 DEBUG Processing 397/650 atomic regions from SNP 118826 to 119426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,172 DEBUG Processing 525/1025 atomic regions from SNP 157270 to 157870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,182 DEBUG Processing 605/858 atomic regions from SNP 181249 to 181849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,238 DEBUG Processing 490/1136 atomic regions from SNP 146825 to 147425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,300 DEBUG Processing 580/899 atomic regions from SNP 173830 to 174430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,311 DEBUG Processing 60/236 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,372 DEBUG Processing 398/650 atomic regions from SNP 119126 to 119726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,436 DEBUG Processing 606/858 atomic regions from SNP 181549 to 182149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,458 DEBUG Processing 526/1025 atomic regions from SNP 157570 to 158170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,518 DEBUG Processing 491/1136 atomic regions from SNP 147125 to 147725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,543 DEBUG Processing 61/236 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,576 DEBUG Processing 581/899 atomic regions from SNP 174130 to 174730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,626 DEBUG Processing 399/650 atomic regions from SNP 119426 to 120026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,703 DEBUG Processing 607/858 atomic regions from SNP 181849 to 182449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,761 DEBUG Processing 527/1025 atomic regions from SNP 157870 to 158470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,776 DEBUG Processing 62/236 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,815 DEBUG Processing 492/1136 atomic regions from SNP 147425 to 148025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,840 DEBUG Processing 582/899 atomic regions from SNP 174430 to 175030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,888 DEBUG Processing 400/650 atomic regions from SNP 119726 to 120326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,948 DEBUG Processing 608/858 atomic regions from SNP 182149 to 182749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,004 DEBUG Processing 63/236 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,067 DEBUG Processing 528/1025 atomic regions from SNP 158170 to 158770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,117 DEBUG Processing 583/899 atomic regions from SNP 174730 to 175330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,126 DEBUG Processing 493/1136 atomic regions from SNP 147725 to 148325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,144 DEBUG Processing 401/650 atomic regions from SNP 120026 to 120626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,205 DEBUG Processing 609/858 atomic regions from SNP 182449 to 183049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,234 DEBUG Processing 64/236 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,340 DEBUG Processing 529/1025 atomic regions from SNP 158470 to 159070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,399 DEBUG Processing 584/899 atomic regions from SNP 175030 to 175630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,407 DEBUG Processing 402/650 atomic regions from SNP 120326 to 120926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,430 DEBUG Processing 494/1136 atomic regions from SNP 148025 to 148625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,470 DEBUG Processing 65/236 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,473 DEBUG Processing 610/858 atomic regions from SNP 182749 to 183349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,634 DEBUG Processing 530/1025 atomic regions from SNP 158770 to 159370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,659 DEBUG Processing 403/650 atomic regions from SNP 120626 to 121226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,679 DEBUG Processing 585/899 atomic regions from SNP 175330 to 175930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,712 DEBUG Processing 66/236 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,731 DEBUG Processing 495/1136 atomic regions from SNP 148325 to 148925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,732 DEBUG Processing 611/858 atomic regions from SNP 183049 to 183649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,905 DEBUG Processing 404/650 atomic regions from SNP 120926 to 121526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,925 DEBUG Processing 531/1025 atomic regions from SNP 159070 to 159670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,948 DEBUG Processing 67/236 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,957 DEBUG Processing 586/899 atomic regions from SNP 175630 to 176230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,992 DEBUG Processing 612/858 atomic regions from SNP 183349 to 183949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,059 DEBUG Processing 496/1136 atomic regions from SNP 148625 to 149225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,144 DEBUG Processing 405/650 atomic regions from SNP 121226 to 121826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,180 DEBUG Processing 68/236 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,198 DEBUG Processing 532/1025 atomic regions from SNP 159370 to 159970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,217 DEBUG Processing 587/899 atomic regions from SNP 175930 to 176530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,244 DEBUG Processing 613/858 atomic regions from SNP 183649 to 184249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,363 DEBUG Processing 497/1136 atomic regions from SNP 148925 to 149525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,381 DEBUG Processing 406/650 atomic regions from SNP 121526 to 122126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,417 DEBUG Processing 69/236 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,464 DEBUG Processing 588/899 atomic regions from SNP 176230 to 176830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,471 DEBUG Processing 533/1025 atomic regions from SNP 159670 to 160270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,487 DEBUG Processing 614/858 atomic regions from SNP 183949 to 184549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,629 DEBUG Processing 407/650 atomic regions from SNP 121826 to 122426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,658 DEBUG Processing 70/236 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,669 DEBUG Processing 498/1136 atomic regions from SNP 149225 to 149825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,710 DEBUG Processing 589/899 atomic regions from SNP 176530 to 177130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,731 DEBUG Processing 615/858 atomic regions from SNP 184249 to 184849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,748 DEBUG Processing 534/1025 atomic regions from SNP 159970 to 160570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,876 DEBUG Processing 408/650 atomic regions from SNP 122126 to 122726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,892 DEBUG Processing 71/236 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,962 DEBUG Processing 590/899 atomic regions from SNP 176830 to 177430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,969 DEBUG Processing 499/1136 atomic regions from SNP 149525 to 150125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,999 DEBUG Processing 616/858 atomic regions from SNP 184549 to 185149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,025 DEBUG Processing 535/1025 atomic regions from SNP 160270 to 160870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,120 DEBUG Processing 72/236 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,125 DEBUG Processing 409/650 atomic regions from SNP 122426 to 123026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,211 DEBUG Processing 591/899 atomic regions from SNP 177130 to 177730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,254 DEBUG Processing 617/858 atomic regions from SNP 184849 to 185449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,288 DEBUG Processing 500/1136 atomic regions from SNP 149825 to 150425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,309 DEBUG Processing 536/1025 atomic regions from SNP 160570 to 161170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,344 DEBUG Processing 73/236 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,371 DEBUG Processing 410/650 atomic regions from SNP 122726 to 123326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,463 DEBUG Processing 592/899 atomic regions from SNP 177430 to 178030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,499 DEBUG Processing 618/858 atomic regions from SNP 185149 to 185749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,581 DEBUG Processing 74/236 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,596 DEBUG Processing 501/1136 atomic regions from SNP 150125 to 150725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,601 DEBUG Processing 537/1025 atomic regions from SNP 160870 to 161470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,627 DEBUG Processing 411/650 atomic regions from SNP 123026 to 123626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,727 DEBUG Processing 593/899 atomic regions from SNP 177730 to 178330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,742 DEBUG Processing 619/858 atomic regions from SNP 185449 to 186049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,818 DEBUG Processing 75/236 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,881 DEBUG Processing 538/1025 atomic regions from SNP 161170 to 161770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,895 DEBUG Processing 412/650 atomic regions from SNP 123326 to 123926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,900 DEBUG Processing 502/1136 atomic regions from SNP 150425 to 151025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,992 DEBUG Processing 620/858 atomic regions from SNP 185749 to 186349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,017 DEBUG Processing 594/899 atomic regions from SNP 178030 to 178630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,053 DEBUG Processing 76/236 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,138 DEBUG Processing 413/650 atomic regions from SNP 123626 to 124226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,161 DEBUG Processing 539/1025 atomic regions from SNP 161470 to 162070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,193 DEBUG Processing 503/1136 atomic regions from SNP 150725 to 151325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,248 DEBUG Processing 621/858 atomic regions from SNP 186049 to 186649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,284 DEBUG Processing 77/236 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,296 DEBUG Processing 595/899 atomic regions from SNP 178330 to 178930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,372 DEBUG Processing 414/650 atomic regions from SNP 123926 to 124526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,439 DEBUG Processing 540/1025 atomic regions from SNP 161770 to 162370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,479 DEBUG Processing 504/1136 atomic regions from SNP 151025 to 151625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,498 DEBUG Processing 622/858 atomic regions from SNP 186349 to 186949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,516 DEBUG Processing 78/236 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,576 DEBUG Processing 596/899 atomic regions from SNP 178630 to 179230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,625 DEBUG Processing 415/650 atomic regions from SNP 124226 to 124826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,714 DEBUG Processing 541/1025 atomic regions from SNP 162070 to 162670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,748 DEBUG Processing 623/858 atomic regions from SNP 186649 to 187249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,752 DEBUG Processing 79/236 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,775 DEBUG Processing 505/1136 atomic regions from SNP 151325 to 151925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,850 DEBUG Processing 597/899 atomic regions from SNP 178930 to 179530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,883 DEBUG Processing 416/650 atomic regions from SNP 124526 to 125126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,981 DEBUG Processing 542/1025 atomic regions from SNP 162370 to 162970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,986 DEBUG Processing 80/236 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,998 DEBUG Processing 624/858 atomic regions from SNP 186949 to 187549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,061 DEBUG Processing 506/1136 atomic regions from SNP 151625 to 152225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,139 DEBUG Processing 598/899 atomic regions from SNP 179230 to 179830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,153 DEBUG Processing 417/650 atomic regions from SNP 124826 to 125426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,232 DEBUG Processing 81/236 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,255 DEBUG Processing 543/1025 atomic regions from SNP 162670 to 163270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,261 DEBUG Processing 625/858 atomic regions from SNP 187249 to 187849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,342 DEBUG Processing 507/1136 atomic regions from SNP 151925 to 152525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,408 DEBUG Processing 418/650 atomic regions from SNP 125126 to 125726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,430 DEBUG Processing 599/899 atomic regions from SNP 179530 to 180130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,481 DEBUG Processing 82/236 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,532 DEBUG Processing 544/1025 atomic regions from SNP 162970 to 163570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,535 DEBUG Processing 626/858 atomic regions from SNP 187549 to 188149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,623 DEBUG Processing 508/1136 atomic regions from SNP 152225 to 152825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,651 DEBUG Processing 419/650 atomic regions from SNP 125426 to 126026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,714 DEBUG Processing 600/899 atomic regions from SNP 179830 to 180430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,715 DEBUG Processing 83/236 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,802 DEBUG Processing 627/858 atomic regions from SNP 187849 to 188449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,810 DEBUG Processing 545/1025 atomic regions from SNP 163270 to 163870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,900 DEBUG Processing 509/1136 atomic regions from SNP 152525 to 153125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,917 DEBUG Processing 420/650 atomic regions from SNP 125726 to 126326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,949 DEBUG Processing 84/236 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,016 DEBUG Processing 601/899 atomic regions from SNP 180130 to 180730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,080 DEBUG Processing 628/858 atomic regions from SNP 188149 to 188749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,084 DEBUG Processing 546/1025 atomic regions from SNP 163570 to 164170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,179 DEBUG Processing 85/236 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,182 DEBUG Processing 421/650 atomic regions from SNP 126026 to 126626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,184 DEBUG Processing 510/1136 atomic regions from SNP 152825 to 153425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,295 DEBUG Processing 602/899 atomic regions from SNP 180430 to 181030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,335 DEBUG Processing 629/858 atomic regions from SNP 188449 to 189049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,354 DEBUG Processing 547/1025 atomic regions from SNP 163870 to 164470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,405 DEBUG Processing 86/236 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,456 DEBUG Processing 422/650 atomic regions from SNP 126326 to 126926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,477 DEBUG Processing 511/1136 atomic regions from SNP 153125 to 153725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,559 DEBUG Processing 603/899 atomic regions from SNP 180730 to 181330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,591 DEBUG Processing 630/858 atomic regions from SNP 188749 to 189349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,623 DEBUG Processing 548/1025 atomic regions from SNP 164170 to 164770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,631 DEBUG Processing 87/236 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,729 DEBUG Processing 423/650 atomic regions from SNP 126626 to 127226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,785 DEBUG Processing 512/1136 atomic regions from SNP 153425 to 154025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,830 DEBUG Processing 604/899 atomic regions from SNP 181030 to 181630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,853 DEBUG Processing 631/858 atomic regions from SNP 189049 to 189649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,858 DEBUG Processing 88/236 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,890 DEBUG Processing 549/1025 atomic regions from SNP 164470 to 165070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,010 DEBUG Processing 424/650 atomic regions from SNP 126926 to 127526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,084 DEBUG Processing 605/899 atomic regions from SNP 181330 to 181930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,088 DEBUG Processing 89/236 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,097 DEBUG Processing 513/1136 atomic regions from SNP 153725 to 154325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,114 DEBUG Processing 632/858 atomic regions from SNP 189349 to 189949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,159 DEBUG Processing 550/1025 atomic regions from SNP 164770 to 165370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,277 DEBUG Processing 425/650 atomic regions from SNP 127226 to 127826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,315 DEBUG Processing 90/236 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,332 DEBUG Processing 606/899 atomic regions from SNP 181630 to 182230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,374 DEBUG Processing 633/858 atomic regions from SNP 189649 to 190249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,392 DEBUG Processing 514/1136 atomic regions from SNP 154025 to 154625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,429 DEBUG Processing 551/1025 atomic regions from SNP 165070 to 165670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,533 DEBUG Processing 426/650 atomic regions from SNP 127526 to 128126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,540 DEBUG Processing 91/236 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,582 DEBUG Processing 607/899 atomic regions from SNP 181930 to 182530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,648 DEBUG Processing 634/858 atomic regions from SNP 189949 to 190549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,684 DEBUG Processing 515/1136 atomic regions from SNP 154325 to 154925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,699 DEBUG Processing 552/1025 atomic regions from SNP 165370 to 165970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,771 DEBUG Processing 92/236 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,781 DEBUG Processing 427/650 atomic regions from SNP 127826 to 128426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,829 DEBUG Processing 608/899 atomic regions from SNP 182230 to 182830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,925 DEBUG Processing 635/858 atomic regions from SNP 190249 to 190849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,957 DEBUG Processing 516/1136 atomic regions from SNP 154625 to 155225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,963 DEBUG Processing 553/1025 atomic regions from SNP 165670 to 166270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,012 DEBUG Processing 93/236 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,056 DEBUG Processing 428/650 atomic regions from SNP 128126 to 128726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,077 DEBUG Processing 609/899 atomic regions from SNP 182530 to 183130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,199 DEBUG Processing 636/858 atomic regions from SNP 190549 to 191149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,233 DEBUG Processing 554/1025 atomic regions from SNP 165970 to 166570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,239 DEBUG Processing 517/1136 atomic regions from SNP 154925 to 155525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,260 DEBUG Processing 94/236 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,322 DEBUG Processing 429/650 atomic regions from SNP 128426 to 129026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,327 DEBUG Processing 610/899 atomic regions from SNP 182830 to 183430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,472 DEBUG Processing 637/858 atomic regions from SNP 190849 to 191449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,492 DEBUG Processing 95/236 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,501 DEBUG Processing 555/1025 atomic regions from SNP 166270 to 166870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,531 DEBUG Processing 518/1136 atomic regions from SNP 155225 to 155825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,571 DEBUG Processing 611/899 atomic regions from SNP 183130 to 183730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,585 DEBUG Processing 430/650 atomic regions from SNP 128726 to 129326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,725 DEBUG Processing 96/236 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,729 DEBUG Processing 638/858 atomic regions from SNP 191149 to 191749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,773 DEBUG Processing 556/1025 atomic regions from SNP 166570 to 167170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,828 DEBUG Processing 612/899 atomic regions from SNP 183430 to 184030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,842 DEBUG Processing 519/1136 atomic regions from SNP 155525 to 156125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,849 DEBUG Processing 431/650 atomic regions from SNP 129026 to 129626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,953 DEBUG Processing 97/236 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,976 DEBUG Processing 639/858 atomic regions from SNP 191449 to 192049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,045 DEBUG Processing 557/1025 atomic regions from SNP 166870 to 167470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,095 DEBUG Processing 613/899 atomic regions from SNP 183730 to 184330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,132 DEBUG Processing 432/650 atomic regions from SNP 129326 to 129926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,160 DEBUG Processing 520/1136 atomic regions from SNP 155825 to 156425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,179 DEBUG Processing 98/236 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,215 DEBUG Processing 640/858 atomic regions from SNP 191749 to 192349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,310 DEBUG Processing 558/1025 atomic regions from SNP 167170 to 167770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,353 DEBUG Processing 614/899 atomic regions from SNP 184030 to 184630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,390 DEBUG Processing 433/650 atomic regions from SNP 129626 to 130226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,408 DEBUG Processing 99/236 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,452 DEBUG Processing 641/858 atomic regions from SNP 192049 to 192649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,466 DEBUG Processing 521/1136 atomic regions from SNP 156125 to 156725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,573 DEBUG Processing 559/1025 atomic regions from SNP 167470 to 168070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,612 DEBUG Processing 615/899 atomic regions from SNP 184330 to 184930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,639 DEBUG Processing 100/236 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,647 DEBUG Processing 434/650 atomic regions from SNP 129926 to 130526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,690 DEBUG Processing 642/858 atomic regions from SNP 192349 to 192949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,768 DEBUG Processing 522/1136 atomic regions from SNP 156425 to 157025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,839 DEBUG Processing 560/1025 atomic regions from SNP 167770 to 168370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,875 DEBUG Processing 101/236 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,880 DEBUG Processing 616/899 atomic regions from SNP 184630 to 185230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,932 DEBUG Processing 435/650 atomic regions from SNP 130226 to 130826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,944 DEBUG Processing 643/858 atomic regions from SNP 192649 to 193249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,071 DEBUG Processing 523/1136 atomic regions from SNP 156725 to 157325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,098 DEBUG Processing 102/236 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,114 DEBUG Processing 561/1025 atomic regions from SNP 168070 to 168670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,132 DEBUG Processing 617/899 atomic regions from SNP 184930 to 185530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,195 DEBUG Processing 644/858 atomic regions from SNP 192949 to 193549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,219 DEBUG Processing 436/650 atomic regions from SNP 130526 to 131126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,323 DEBUG Processing 103/236 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,367 DEBUG Processing 524/1136 atomic regions from SNP 157025 to 157625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,376 DEBUG Processing 618/899 atomic regions from SNP 185230 to 185830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,378 DEBUG Processing 562/1025 atomic regions from SNP 168370 to 168970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,440 DEBUG Processing 645/858 atomic regions from SNP 193249 to 193849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,495 DEBUG Processing 437/650 atomic regions from SNP 130826 to 131426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,551 DEBUG Processing 104/236 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,614 DEBUG Processing 619/899 atomic regions from SNP 185530 to 186130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,647 DEBUG Processing 563/1025 atomic regions from SNP 168670 to 169270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,670 DEBUG Processing 525/1136 atomic regions from SNP 157325 to 157925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,693 DEBUG Processing 646/858 atomic regions from SNP 193549 to 194149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,765 DEBUG Processing 438/650 atomic regions from SNP 131126 to 131726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,780 DEBUG Processing 105/236 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,854 DEBUG Processing 620/899 atomic regions from SNP 185830 to 186430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,914 DEBUG Processing 564/1025 atomic regions from SNP 168970 to 169570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,960 DEBUG Processing 647/858 atomic regions from SNP 193849 to 194449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,974 DEBUG Processing 526/1136 atomic regions from SNP 157625 to 158225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,013 DEBUG Processing 106/236 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,016 DEBUG Processing 439/650 atomic regions from SNP 131426 to 132026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,104 DEBUG Processing 621/899 atomic regions from SNP 186130 to 186730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,177 DEBUG Processing 565/1025 atomic regions from SNP 169270 to 169870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,224 DEBUG Processing 648/858 atomic regions from SNP 194149 to 194749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,248 DEBUG Processing 107/236 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,263 DEBUG Processing 440/650 atomic regions from SNP 131726 to 132326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,275 DEBUG Processing 527/1136 atomic regions from SNP 157925 to 158525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,357 DEBUG Processing 622/899 atomic regions from SNP 186430 to 187030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,436 DEBUG Processing 566/1025 atomic regions from SNP 169570 to 170170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,471 DEBUG Processing 649/858 atomic regions from SNP 194449 to 195049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,477 DEBUG Processing 108/236 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,511 DEBUG Processing 441/650 atomic regions from SNP 132026 to 132626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,585 DEBUG Processing 528/1136 atomic regions from SNP 158225 to 158825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,605 DEBUG Processing 623/899 atomic regions from SNP 186730 to 187330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,699 DEBUG Processing 567/1025 atomic regions from SNP 169870 to 170470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,701 DEBUG Processing 109/236 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,707 DEBUG Processing 650/858 atomic regions from SNP 194749 to 195349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,769 DEBUG Processing 442/650 atomic regions from SNP 132326 to 132926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,848 DEBUG Processing 624/899 atomic regions from SNP 187030 to 187630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,899 DEBUG Processing 529/1136 atomic regions from SNP 158525 to 159125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,922 DEBUG Processing 110/236 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,947 DEBUG Processing 651/858 atomic regions from SNP 195049 to 195649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,962 DEBUG Processing 568/1025 atomic regions from SNP 170170 to 170770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,029 DEBUG Processing 443/650 atomic regions from SNP 132626 to 133226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,092 DEBUG Processing 625/899 atomic regions from SNP 187330 to 187930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,152 DEBUG Processing 111/236 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,197 DEBUG Processing 652/858 atomic regions from SNP 195349 to 195949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,213 DEBUG Processing 530/1136 atomic regions from SNP 158825 to 159425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,227 DEBUG Processing 569/1025 atomic regions from SNP 170470 to 171070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,275 DEBUG Processing 444/650 atomic regions from SNP 132926 to 133526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,334 DEBUG Processing 626/899 atomic regions from SNP 187630 to 188230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,380 DEBUG Processing 112/236 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,447 DEBUG Processing 653/858 atomic regions from SNP 195649 to 196249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,491 DEBUG Processing 570/1025 atomic regions from SNP 170770 to 171370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,520 DEBUG Processing 531/1136 atomic regions from SNP 159125 to 159725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,537 DEBUG Processing 445/650 atomic regions from SNP 133226 to 133826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,579 DEBUG Processing 627/899 atomic regions from SNP 187930 to 188530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,609 DEBUG Processing 113/236 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,693 DEBUG Processing 654/858 atomic regions from SNP 195949 to 196549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,759 DEBUG Processing 571/1025 atomic regions from SNP 171070 to 171670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,822 DEBUG Processing 446/650 atomic regions from SNP 133526 to 134126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,828 DEBUG Processing 628/899 atomic regions from SNP 188230 to 188830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,831 DEBUG Processing 532/1136 atomic regions from SNP 159425 to 160025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,839 DEBUG Processing 114/236 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,942 DEBUG Processing 655/858 atomic regions from SNP 196249 to 196849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,024 DEBUG Processing 572/1025 atomic regions from SNP 171370 to 171970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,075 DEBUG Processing 115/236 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,080 DEBUG Processing 629/899 atomic regions from SNP 188530 to 189130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,088 DEBUG Processing 447/650 atomic regions from SNP 133826 to 134426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,134 DEBUG Processing 533/1136 atomic regions from SNP 159725 to 160325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,192 DEBUG Processing 656/858 atomic regions from SNP 196549 to 197149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,288 DEBUG Processing 573/1025 atomic regions from SNP 171670 to 172270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,308 DEBUG Processing 116/236 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,328 DEBUG Processing 630/899 atomic regions from SNP 188830 to 189430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,336 DEBUG Processing 448/650 atomic regions from SNP 134126 to 134726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,432 DEBUG Processing 657/858 atomic regions from SNP 196849 to 197449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,445 DEBUG Processing 534/1136 atomic regions from SNP 160025 to 160625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,540 DEBUG Processing 117/236 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,560 DEBUG Processing 574/1025 atomic regions from SNP 171970 to 172570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,577 DEBUG Processing 631/899 atomic regions from SNP 189130 to 189730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,582 DEBUG Processing 449/650 atomic regions from SNP 134426 to 135026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,671 DEBUG Processing 658/858 atomic regions from SNP 197149 to 197749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,754 DEBUG Processing 535/1136 atomic regions from SNP 160325 to 160925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,773 DEBUG Processing 118/236 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,828 DEBUG Processing 632/899 atomic regions from SNP 189430 to 190030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,833 DEBUG Processing 450/650 atomic regions from SNP 134726 to 135326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,837 DEBUG Processing 575/1025 atomic regions from SNP 172270 to 172870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,910 DEBUG Processing 659/858 atomic regions from SNP 197449 to 198049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,016 DEBUG Processing 119/236 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,055 DEBUG Processing 536/1136 atomic regions from SNP 160625 to 161225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,091 DEBUG Processing 451/650 atomic regions from SNP 135026 to 135626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,095 DEBUG Processing 633/899 atomic regions from SNP 189730 to 190330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,119 DEBUG Processing 576/1025 atomic regions from SNP 172570 to 173170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,157 DEBUG Processing 660/858 atomic regions from SNP 197749 to 198349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,242 DEBUG Processing 120/236 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,342 DEBUG Processing 537/1136 atomic regions from SNP 160925 to 161525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,343 DEBUG Processing 452/650 atomic regions from SNP 135326 to 135926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,348 DEBUG Processing 634/899 atomic regions from SNP 190030 to 190630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,394 DEBUG Processing 577/1025 atomic regions from SNP 172870 to 173470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,406 DEBUG Processing 661/858 atomic regions from SNP 198049 to 198649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,466 DEBUG Processing 121/236 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,592 DEBUG Processing 453/650 atomic regions from SNP 135626 to 136226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,606 DEBUG Processing 635/899 atomic regions from SNP 190330 to 190930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,625 DEBUG Processing 538/1136 atomic regions from SNP 161225 to 161825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,656 DEBUG Processing 662/858 atomic regions from SNP 198349 to 198949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,671 DEBUG Processing 578/1025 atomic regions from SNP 173170 to 173770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,704 DEBUG Processing 122/236 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,845 DEBUG Processing 454/650 atomic regions from SNP 135926 to 136526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,858 DEBUG Processing 636/899 atomic regions from SNP 190630 to 191230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,902 DEBUG Processing 663/858 atomic regions from SNP 198649 to 199249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,903 DEBUG Processing 539/1136 atomic regions from SNP 161525 to 162125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,946 DEBUG Processing 123/236 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,948 DEBUG Processing 579/1025 atomic regions from SNP 173470 to 174070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,104 DEBUG Processing 455/650 atomic regions from SNP 136226 to 136826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,107 DEBUG Processing 637/899 atomic regions from SNP 190930 to 191530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,149 DEBUG Processing 664/858 atomic regions from SNP 198949 to 199549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,178 DEBUG Processing 124/236 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,181 DEBUG Processing 540/1136 atomic regions from SNP 161825 to 162425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,225 DEBUG Processing 580/1025 atomic regions from SNP 173770 to 174370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,353 DEBUG Processing 638/899 atomic regions from SNP 191230 to 191830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,357 DEBUG Processing 456/650 atomic regions from SNP 136526 to 137126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,390 DEBUG Processing 665/858 atomic regions from SNP 199249 to 199849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,434 DEBUG Processing 125/236 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,468 DEBUG Processing 541/1136 atomic regions from SNP 162125 to 162725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,501 DEBUG Processing 581/1025 atomic regions from SNP 174070 to 174670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,600 DEBUG Processing 639/899 atomic regions from SNP 191530 to 192130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,611 DEBUG Processing 457/650 atomic regions from SNP 136826 to 137426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,658 DEBUG Processing 666/858 atomic regions from SNP 199549 to 200149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,693 DEBUG Processing 126/236 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,757 DEBUG Processing 542/1136 atomic regions from SNP 162425 to 163025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,778 DEBUG Processing 582/1025 atomic regions from SNP 174370 to 174970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,849 DEBUG Processing 640/899 atomic regions from SNP 191830 to 192430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,854 DEBUG Processing 458/650 atomic regions from SNP 137126 to 137726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,910 DEBUG Processing 667/858 atomic regions from SNP 199849 to 200449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,924 DEBUG Processing 127/236 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,045 DEBUG Processing 543/1136 atomic regions from SNP 162725 to 163325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,055 DEBUG Processing 583/1025 atomic regions from SNP 174670 to 175270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,106 DEBUG Processing 641/899 atomic regions from SNP 192130 to 192730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,117 DEBUG Processing 459/650 atomic regions from SNP 137426 to 138026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,158 DEBUG Processing 128/236 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,170 DEBUG Processing 668/858 atomic regions from SNP 200149 to 200749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,332 DEBUG Processing 584/1025 atomic regions from SNP 174970 to 175570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,332 DEBUG Processing 544/1136 atomic regions from SNP 163025 to 163625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,379 DEBUG Processing 642/899 atomic regions from SNP 192430 to 193030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,391 DEBUG Processing 460/650 atomic regions from SNP 137726 to 138326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,395 DEBUG Processing 129/236 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,452 DEBUG Processing 669/858 atomic regions from SNP 200449 to 201049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,607 DEBUG Processing 585/1025 atomic regions from SNP 175270 to 175870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,621 DEBUG Processing 545/1136 atomic regions from SNP 163325 to 163925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,638 DEBUG Processing 130/236 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,657 DEBUG Processing 643/899 atomic regions from SNP 192730 to 193330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,668 DEBUG Processing 461/650 atomic regions from SNP 138026 to 138626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,730 DEBUG Processing 670/858 atomic regions from SNP 200749 to 201349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,878 DEBUG Processing 131/236 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,883 DEBUG Processing 586/1025 atomic regions from SNP 175570 to 176170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,913 DEBUG Processing 546/1136 atomic regions from SNP 163625 to 164225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,916 DEBUG Processing 644/899 atomic regions from SNP 193030 to 193630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,922 DEBUG Processing 462/650 atomic regions from SNP 138326 to 138926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,993 DEBUG Processing 671/858 atomic regions from SNP 201049 to 201649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,111 DEBUG Processing 132/236 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,163 DEBUG Processing 587/1025 atomic regions from SNP 175870 to 176470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,177 DEBUG Processing 463/650 atomic regions from SNP 138626 to 139226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,192 DEBUG Processing 645/899 atomic regions from SNP 193330 to 193930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,207 DEBUG Processing 547/1136 atomic regions from SNP 163925 to 164525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,257 DEBUG Processing 672/858 atomic regions from SNP 201349 to 201949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,337 DEBUG Processing 133/236 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,425 DEBUG Processing 464/650 atomic regions from SNP 138926 to 139526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,438 DEBUG Processing 588/1025 atomic regions from SNP 176170 to 176770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,479 DEBUG Processing 646/899 atomic regions from SNP 193630 to 194230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,500 DEBUG Processing 548/1136 atomic regions from SNP 164225 to 164825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,539 DEBUG Processing 673/858 atomic regions from SNP 201649 to 202249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,567 DEBUG Processing 134/236 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,678 DEBUG Processing 465/650 atomic regions from SNP 139226 to 139826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,714 DEBUG Processing 589/1025 atomic regions from SNP 176470 to 177070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,762 DEBUG Processing 647/899 atomic regions from SNP 193930 to 194530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,797 DEBUG Processing 549/1136 atomic regions from SNP 164525 to 165125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,811 DEBUG Processing 135/236 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,812 DEBUG Processing 674/858 atomic regions from SNP 201949 to 202549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,942 DEBUG Processing 466/650 atomic regions from SNP 139526 to 140126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,989 DEBUG Processing 590/1025 atomic regions from SNP 176770 to 177370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,033 DEBUG Processing 648/899 atomic regions from SNP 194230 to 194830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,061 DEBUG Processing 136/236 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,086 DEBUG Processing 675/858 atomic regions from SNP 202249 to 202849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,090 DEBUG Processing 550/1136 atomic regions from SNP 164825 to 165425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,210 DEBUG Processing 467/650 atomic regions from SNP 139826 to 140426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,262 DEBUG Processing 591/1025 atomic regions from SNP 177070 to 177670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,287 DEBUG Processing 649/899 atomic regions from SNP 194530 to 195130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,299 DEBUG Processing 137/236 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,357 DEBUG Processing 676/858 atomic regions from SNP 202549 to 203149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,379 DEBUG Processing 551/1136 atomic regions from SNP 165125 to 165725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,488 DEBUG Processing 468/650 atomic regions from SNP 140126 to 140726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,533 DEBUG Processing 138/236 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,535 DEBUG Processing 650/899 atomic regions from SNP 194830 to 195430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,536 DEBUG Processing 592/1025 atomic regions from SNP 177370 to 177970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,625 DEBUG Processing 677/858 atomic regions from SNP 202849 to 203449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,672 DEBUG Processing 552/1136 atomic regions from SNP 165425 to 166025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,759 DEBUG Processing 469/650 atomic regions from SNP 140426 to 141026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,768 DEBUG Processing 139/236 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,784 DEBUG Processing 651/899 atomic regions from SNP 195130 to 195730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,827 DEBUG Processing 593/1025 atomic regions from SNP 177670 to 178270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,887 DEBUG Processing 678/858 atomic regions from SNP 203149 to 203749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,961 DEBUG Processing 553/1136 atomic regions from SNP 165725 to 166325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,006 DEBUG Processing 140/236 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,028 DEBUG Processing 470/650 atomic regions from SNP 140726 to 141326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,046 DEBUG Processing 652/899 atomic regions from SNP 195430 to 196030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,115 DEBUG Processing 594/1025 atomic regions from SNP 177970 to 178570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,165 DEBUG Processing 679/858 atomic regions from SNP 203449 to 204049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,246 DEBUG Processing 141/236 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,256 DEBUG Processing 554/1136 atomic regions from SNP 166025 to 166625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,303 DEBUG Processing 471/650 atomic regions from SNP 141026 to 141626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,309 DEBUG Processing 653/899 atomic regions from SNP 195730 to 196330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,407 DEBUG Processing 595/1025 atomic regions from SNP 178270 to 178870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,432 DEBUG Processing 680/858 atomic regions from SNP 203749 to 204349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,483 DEBUG Processing 142/236 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,545 DEBUG Processing 555/1136 atomic regions from SNP 166325 to 166925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,567 DEBUG Processing 472/650 atomic regions from SNP 141326 to 141926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,568 DEBUG Processing 654/899 atomic regions from SNP 196030 to 196630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,693 DEBUG Processing 596/1025 atomic regions from SNP 178570 to 179170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,695 DEBUG Processing 681/858 atomic regions from SNP 204049 to 204649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,719 DEBUG Processing 143/236 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,824 DEBUG Processing 655/899 atomic regions from SNP 196330 to 196930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,829 DEBUG Processing 473/650 atomic regions from SNP 141626 to 142226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,830 DEBUG Processing 556/1136 atomic regions from SNP 166625 to 167225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,957 DEBUG Processing 144/236 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,966 DEBUG Processing 682/858 atomic regions from SNP 204349 to 204949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,974 DEBUG Processing 597/1025 atomic regions from SNP 178870 to 179470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,077 DEBUG Processing 656/899 atomic regions from SNP 196630 to 197230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,102 DEBUG Processing 474/650 atomic regions from SNP 141926 to 142526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,111 DEBUG Processing 557/1136 atomic regions from SNP 166925 to 167525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,194 DEBUG Processing 145/236 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,244 DEBUG Processing 683/858 atomic regions from SNP 204649 to 205249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,256 DEBUG Processing 598/1025 atomic regions from SNP 179170 to 179770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,334 DEBUG Processing 657/899 atomic regions from SNP 196930 to 197530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,381 DEBUG Processing 475/650 atomic regions from SNP 142226 to 142826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,385 DEBUG Processing 558/1136 atomic regions from SNP 167225 to 167825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,429 DEBUG Processing 146/236 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,510 DEBUG Processing 684/858 atomic regions from SNP 204949 to 205549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,536 DEBUG Processing 599/1025 atomic regions from SNP 179470 to 180070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,592 DEBUG Processing 658/899 atomic regions from SNP 197230 to 197830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,655 DEBUG Processing 476/650 atomic regions from SNP 142526 to 143126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,657 DEBUG Processing 147/236 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,661 DEBUG Processing 559/1136 atomic regions from SNP 167525 to 168125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,787 DEBUG Processing 685/858 atomic regions from SNP 205249 to 205849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,811 DEBUG Processing 600/1025 atomic regions from SNP 179770 to 180370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,849 DEBUG Processing 659/899 atomic regions from SNP 197530 to 198130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,887 DEBUG Processing 148/236 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,910 DEBUG Processing 477/650 atomic regions from SNP 142826 to 143426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,943 DEBUG Processing 560/1136 atomic regions from SNP 167825 to 168425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,054 DEBUG Processing 686/858 atomic regions from SNP 205549 to 206149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,085 DEBUG Processing 601/1025 atomic regions from SNP 180070 to 180670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,108 DEBUG Processing 660/899 atomic regions from SNP 197830 to 198430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,122 DEBUG Processing 149/236 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,168 DEBUG Processing 478/650 atomic regions from SNP 143126 to 143726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,227 DEBUG Processing 561/1136 atomic regions from SNP 168125 to 168725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,311 DEBUG Processing 687/858 atomic regions from SNP 205849 to 206449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,357 DEBUG Processing 150/236 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,358 DEBUG Processing 602/1025 atomic regions from SNP 180370 to 180970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,363 DEBUG Processing 661/899 atomic regions from SNP 198130 to 198730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,420 DEBUG Processing 479/650 atomic regions from SNP 143426 to 144026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,508 DEBUG Processing 562/1136 atomic regions from SNP 168425 to 169025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,566 DEBUG Processing 688/858 atomic regions from SNP 206149 to 206749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,593 DEBUG Processing 151/236 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,619 DEBUG Processing 662/899 atomic regions from SNP 198430 to 199030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,634 DEBUG Processing 603/1025 atomic regions from SNP 180670 to 181270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,675 DEBUG Processing 480/650 atomic regions from SNP 143726 to 144326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,790 DEBUG Processing 563/1136 atomic regions from SNP 168725 to 169325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,813 DEBUG Processing 689/858 atomic regions from SNP 206449 to 207049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,826 DEBUG Processing 152/236 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,872 DEBUG Processing 663/899 atomic regions from SNP 198730 to 199330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,911 DEBUG Processing 604/1025 atomic regions from SNP 180970 to 181570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,938 DEBUG Processing 481/650 atomic regions from SNP 144026 to 144626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,057 DEBUG Processing 153/236 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,071 DEBUG Processing 564/1136 atomic regions from SNP 169025 to 169625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,085 DEBUG Processing 690/858 atomic regions from SNP 206749 to 207349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,124 DEBUG Processing 664/899 atomic regions from SNP 199030 to 199630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,187 DEBUG Processing 605/1025 atomic regions from SNP 181270 to 181870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,190 DEBUG Processing 482/650 atomic regions from SNP 144326 to 144926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,303 DEBUG Processing 154/236 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,366 DEBUG Processing 691/858 atomic regions from SNP 207049 to 207649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,371 DEBUG Processing 565/1136 atomic regions from SNP 169325 to 169925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,376 DEBUG Processing 665/899 atomic regions from SNP 199330 to 199930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,443 DEBUG Processing 483/650 atomic regions from SNP 144626 to 145226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,465 DEBUG Processing 606/1025 atomic regions from SNP 181570 to 182170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,535 DEBUG Processing 155/236 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,631 DEBUG Processing 666/899 atomic regions from SNP 199630 to 200230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,645 DEBUG Processing 692/858 atomic regions from SNP 207349 to 207949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,664 DEBUG Processing 566/1136 atomic regions from SNP 169625 to 170225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,696 DEBUG Processing 484/650 atomic regions from SNP 144926 to 145526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,743 DEBUG Processing 607/1025 atomic regions from SNP 181870 to 182470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,772 DEBUG Processing 156/236 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,878 DEBUG Processing 667/899 atomic regions from SNP 199930 to 200530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,917 DEBUG Processing 693/858 atomic regions from SNP 207649 to 208249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,948 DEBUG Processing 485/650 atomic regions from SNP 145226 to 145826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,951 DEBUG Processing 567/1136 atomic regions from SNP 169925 to 170525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,015 DEBUG Processing 157/236 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,027 DEBUG Processing 608/1025 atomic regions from SNP 182170 to 182770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,123 DEBUG Processing 668/899 atomic regions from SNP 200230 to 200830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,189 DEBUG Processing 694/858 atomic regions from SNP 207949 to 208549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,193 DEBUG Processing 486/650 atomic regions from SNP 145526 to 146126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,233 DEBUG Processing 568/1136 atomic regions from SNP 170225 to 170825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,259 DEBUG Processing 158/236 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,314 DEBUG Processing 609/1025 atomic regions from SNP 182470 to 183070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,372 DEBUG Processing 669/899 atomic regions from SNP 200530 to 201130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,435 DEBUG Processing 487/650 atomic regions from SNP 145826 to 146426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,448 DEBUG Processing 695/858 atomic regions from SNP 208249 to 208849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,495 DEBUG Processing 159/236 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,516 DEBUG Processing 569/1136 atomic regions from SNP 170525 to 171125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,599 DEBUG Processing 610/1025 atomic regions from SNP 182770 to 183370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,626 DEBUG Processing 670/899 atomic regions from SNP 200830 to 201430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,683 DEBUG Processing 488/650 atomic regions from SNP 146126 to 146726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,707 DEBUG Processing 696/858 atomic regions from SNP 208549 to 209149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,727 DEBUG Processing 160/236 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,805 DEBUG Processing 570/1136 atomic regions from SNP 170825 to 171425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,882 DEBUG Processing 611/1025 atomic regions from SNP 183070 to 183670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,883 DEBUG Processing 671/899 atomic regions from SNP 201130 to 201730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,938 DEBUG Processing 489/650 atomic regions from SNP 146426 to 147026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,962 DEBUG Processing 161/236 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,974 DEBUG Processing 697/858 atomic regions from SNP 208849 to 209449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,088 DEBUG Processing 571/1136 atomic regions from SNP 171125 to 171725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,135 DEBUG Processing 672/899 atomic regions from SNP 201430 to 202030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,163 DEBUG Processing 612/1025 atomic regions from SNP 183370 to 183970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,203 DEBUG Processing 490/650 atomic regions from SNP 146726 to 147326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,203 DEBUG Processing 162/236 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,258 DEBUG Processing 698/858 atomic regions from SNP 209149 to 209749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,365 DEBUG Processing 572/1136 atomic regions from SNP 171425 to 172025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,379 DEBUG Processing 673/899 atomic regions from SNP 201730 to 202330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,444 DEBUG Processing 613/1025 atomic regions from SNP 183670 to 184270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,447 DEBUG Processing 163/236 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,482 DEBUG Processing 491/650 atomic regions from SNP 147026 to 147626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,547 DEBUG Processing 699/858 atomic regions from SNP 209449 to 210049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,622 DEBUG Processing 674/899 atomic regions from SNP 202030 to 202630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,642 DEBUG Processing 573/1136 atomic regions from SNP 171725 to 172325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,691 DEBUG Processing 164/236 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,730 DEBUG Processing 614/1025 atomic regions from SNP 183970 to 184570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,756 DEBUG Processing 492/650 atomic regions from SNP 147326 to 147926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,817 DEBUG Processing 700/858 atomic regions from SNP 209749 to 210349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,900 DEBUG Processing 675/899 atomic regions from SNP 202330 to 202930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,925 DEBUG Processing 574/1136 atomic regions from SNP 172025 to 172625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,929 DEBUG Processing 165/236 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,013 DEBUG Processing 615/1025 atomic regions from SNP 184270 to 184870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,033 DEBUG Processing 493/650 atomic regions from SNP 147626 to 148226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,075 DEBUG Processing 701/858 atomic regions from SNP 210049 to 210649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,161 DEBUG Processing 166/236 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,166 DEBUG Processing 676/899 atomic regions from SNP 202630 to 203230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,213 DEBUG Processing 575/1136 atomic regions from SNP 172325 to 172925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,289 DEBUG Processing 616/1025 atomic regions from SNP 184570 to 185170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,310 DEBUG Processing 494/650 atomic regions from SNP 147926 to 148526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,327 DEBUG Processing 702/858 atomic regions from SNP 210349 to 210949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,398 DEBUG Processing 167/236 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,430 DEBUG Processing 677/899 atomic regions from SNP 202930 to 203530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,498 DEBUG Processing 576/1136 atomic regions from SNP 172625 to 173225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,558 DEBUG Processing 617/1025 atomic regions from SNP 184870 to 185470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,576 DEBUG Processing 703/858 atomic regions from SNP 210649 to 211249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,591 DEBUG Processing 495/650 atomic regions from SNP 148226 to 148826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,641 DEBUG Processing 168/236 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,697 DEBUG Processing 678/899 atomic regions from SNP 203230 to 203830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,782 DEBUG Processing 577/1136 atomic regions from SNP 172925 to 173525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,825 DEBUG Processing 704/858 atomic regions from SNP 210949 to 211549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,830 DEBUG Processing 618/1025 atomic regions from SNP 185170 to 185770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,871 DEBUG Processing 496/650 atomic regions from SNP 148526 to 149126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,885 DEBUG Processing 169/236 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,956 DEBUG Processing 679/899 atomic regions from SNP 203530 to 204130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,070 DEBUG Processing 578/1136 atomic regions from SNP 173225 to 173825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,074 DEBUG Processing 705/858 atomic regions from SNP 211249 to 211849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,106 DEBUG Processing 619/1025 atomic regions from SNP 185470 to 186070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,123 DEBUG Processing 170/236 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,155 DEBUG Processing 497/650 atomic regions from SNP 148826 to 149426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,227 DEBUG Processing 680/899 atomic regions from SNP 203830 to 204430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,323 DEBUG Processing 706/858 atomic regions from SNP 211549 to 212149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,367 DEBUG Processing 579/1136 atomic regions from SNP 173525 to 174125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,368 DEBUG Processing 171/236 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,385 DEBUG Processing 620/1025 atomic regions from SNP 185770 to 186370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,423 DEBUG Processing 498/650 atomic regions from SNP 149126 to 149726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,510 DEBUG Processing 681/899 atomic regions from SNP 204130 to 204730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,567 DEBUG Processing 707/858 atomic regions from SNP 211849 to 212449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,610 DEBUG Processing 172/236 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,661 DEBUG Processing 580/1136 atomic regions from SNP 173825 to 174425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,665 DEBUG Processing 621/1025 atomic regions from SNP 186070 to 186670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,689 DEBUG Processing 499/650 atomic regions from SNP 149426 to 150026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,792 DEBUG Processing 682/899 atomic regions from SNP 204430 to 205030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,810 DEBUG Processing 708/858 atomic regions from SNP 212149 to 212749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,850 DEBUG Processing 173/236 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,941 DEBUG Processing 622/1025 atomic regions from SNP 186370 to 186970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,953 DEBUG Processing 581/1136 atomic regions from SNP 174125 to 174725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,961 DEBUG Processing 500/650 atomic regions from SNP 149726 to 150326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,060 DEBUG Processing 683/899 atomic regions from SNP 204730 to 205330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,061 DEBUG Processing 709/858 atomic regions from SNP 212449 to 213049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,078 DEBUG Processing 174/236 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,214 DEBUG Processing 623/1025 atomic regions from SNP 186670 to 187270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,228 DEBUG Processing 501/650 atomic regions from SNP 150026 to 150626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,239 DEBUG Processing 582/1136 atomic regions from SNP 174425 to 175025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,318 DEBUG Processing 710/858 atomic regions from SNP 212749 to 213349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,326 DEBUG Processing 684/899 atomic regions from SNP 205030 to 205630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,327 DEBUG Processing 175/236 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,483 DEBUG Processing 502/650 atomic regions from SNP 150326 to 150926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,494 DEBUG Processing 624/1025 atomic regions from SNP 186970 to 187570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,532 DEBUG Processing 583/1136 atomic regions from SNP 174725 to 175325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,580 DEBUG Processing 711/858 atomic regions from SNP 213049 to 213649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,581 DEBUG Processing 176/236 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,598 DEBUG Processing 685/899 atomic regions from SNP 205330 to 205930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,735 DEBUG Processing 503/650 atomic regions from SNP 150626 to 151226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,762 DEBUG Processing 625/1025 atomic regions from SNP 187270 to 187870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,817 DEBUG Processing 177/236 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,820 DEBUG Processing 584/1136 atomic regions from SNP 175025 to 175625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,839 DEBUG Processing 712/858 atomic regions from SNP 213349 to 213949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,868 DEBUG Processing 686/899 atomic regions from SNP 205630 to 206230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,999 DEBUG Processing 504/650 atomic regions from SNP 150926 to 151526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,027 DEBUG Processing 626/1025 atomic regions from SNP 187570 to 188170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,045 DEBUG Processing 178/236 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,099 DEBUG Processing 713/858 atomic regions from SNP 213649 to 214249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,107 DEBUG Processing 585/1136 atomic regions from SNP 175325 to 175925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,148 DEBUG Processing 687/899 atomic regions from SNP 205930 to 206530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,254 DEBUG Processing 505/650 atomic regions from SNP 151226 to 151826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,272 DEBUG Processing 179/236 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,295 DEBUG Processing 627/1025 atomic regions from SNP 187870 to 188470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,355 DEBUG Processing 714/858 atomic regions from SNP 213949 to 214549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,399 DEBUG Processing 586/1136 atomic regions from SNP 175625 to 176225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,425 DEBUG Processing 688/899 atomic regions from SNP 206230 to 206830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,506 DEBUG Processing 180/236 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,507 DEBUG Processing 506/650 atomic regions from SNP 151526 to 152126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,564 DEBUG Processing 628/1025 atomic regions from SNP 188170 to 188770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,604 DEBUG Processing 715/858 atomic regions from SNP 214249 to 214849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,684 DEBUG Processing 587/1136 atomic regions from SNP 175925 to 176525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,697 DEBUG Processing 689/899 atomic regions from SNP 206530 to 207130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,748 DEBUG Processing 181/236 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,769 DEBUG Processing 507/650 atomic regions from SNP 151826 to 152426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,842 DEBUG Processing 629/1025 atomic regions from SNP 188470 to 189070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,856 DEBUG Processing 716/858 atomic regions from SNP 214549 to 215149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,959 DEBUG Processing 690/899 atomic regions from SNP 206830 to 207430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,968 DEBUG Processing 588/1136 atomic regions from SNP 176225 to 176825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,986 DEBUG Processing 182/236 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,035 DEBUG Processing 508/650 atomic regions from SNP 152126 to 152726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,107 DEBUG Processing 717/858 atomic regions from SNP 214849 to 215449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,123 DEBUG Processing 630/1025 atomic regions from SNP 188770 to 189370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,216 DEBUG Processing 183/236 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,223 DEBUG Processing 691/899 atomic regions from SNP 207130 to 207730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,251 DEBUG Processing 589/1136 atomic regions from SNP 176525 to 177125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,319 DEBUG Processing 509/650 atomic regions from SNP 152426 to 153026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,366 DEBUG Processing 718/858 atomic regions from SNP 215149 to 215749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,400 DEBUG Processing 631/1025 atomic regions from SNP 189070 to 189670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,448 DEBUG Processing 184/236 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,474 DEBUG Processing 692/899 atomic regions from SNP 207430 to 208030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,538 DEBUG Processing 590/1136 atomic regions from SNP 176825 to 177425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,605 DEBUG Processing 510/650 atomic regions from SNP 152726 to 153326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,625 DEBUG Processing 719/858 atomic regions from SNP 215449 to 216049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,673 DEBUG Processing 632/1025 atomic regions from SNP 189370 to 189970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,689 DEBUG Processing 185/236 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,727 DEBUG Processing 693/899 atomic regions from SNP 207730 to 208330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,826 DEBUG Processing 591/1136 atomic regions from SNP 177125 to 177725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,886 DEBUG Processing 511/650 atomic regions from SNP 153026 to 153626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,887 DEBUG Processing 720/858 atomic regions from SNP 215749 to 216349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,927 DEBUG Processing 186/236 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,953 DEBUG Processing 633/1025 atomic regions from SNP 189670 to 190270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,986 DEBUG Processing 694/899 atomic regions from SNP 208030 to 208630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,106 DEBUG Processing 592/1136 atomic regions from SNP 177425 to 178025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,164 DEBUG Processing 187/236 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,170 DEBUG Processing 721/858 atomic regions from SNP 216049 to 216649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,174 DEBUG Processing 512/650 atomic regions from SNP 153326 to 153926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,245 DEBUG Processing 634/1025 atomic regions from SNP 189970 to 190570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,265 DEBUG Processing 695/899 atomic regions from SNP 208330 to 208930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,394 DEBUG Processing 593/1136 atomic regions from SNP 177725 to 178325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,399 DEBUG Processing 188/236 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,436 DEBUG Processing 722/858 atomic regions from SNP 216349 to 216949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,465 DEBUG Processing 513/650 atomic regions from SNP 153626 to 154226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,524 DEBUG Processing 635/1025 atomic regions from SNP 190270 to 190870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,530 DEBUG Processing 696/899 atomic regions from SNP 208630 to 209230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,638 DEBUG Processing 189/236 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,685 DEBUG Processing 723/858 atomic regions from SNP 216649 to 217249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,687 DEBUG Processing 594/1136 atomic regions from SNP 178025 to 178625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,752 DEBUG Processing 514/650 atomic regions from SNP 153926 to 154526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,795 DEBUG Processing 636/1025 atomic regions from SNP 190570 to 191170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,799 DEBUG Processing 697/899 atomic regions from SNP 208930 to 209530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,875 DEBUG Processing 190/236 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,937 DEBUG Processing 724/858 atomic regions from SNP 216949 to 217549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,979 DEBUG Processing 595/1136 atomic regions from SNP 178325 to 178925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,032 DEBUG Processing 515/650 atomic regions from SNP 154226 to 154826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,058 DEBUG Processing 698/899 atomic regions from SNP 209230 to 209830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,066 DEBUG Processing 637/1025 atomic regions from SNP 190870 to 191470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,115 DEBUG Processing 191/236 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,190 DEBUG Processing 725/858 atomic regions from SNP 217249 to 217849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,266 DEBUG Processing 596/1136 atomic regions from SNP 178625 to 179225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,309 DEBUG Processing 516/650 atomic regions from SNP 154526 to 155126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,316 DEBUG Processing 699/899 atomic regions from SNP 209530 to 210130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,342 DEBUG Processing 638/1025 atomic regions from SNP 191170 to 191770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,359 DEBUG Processing 192/236 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,465 DEBUG Processing 726/858 atomic regions from SNP 217549 to 218149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,548 DEBUG Processing 597/1136 atomic regions from SNP 178925 to 179525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,571 DEBUG Processing 700/899 atomic regions from SNP 209830 to 210430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,590 DEBUG Processing 517/650 atomic regions from SNP 154826 to 155426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,614 DEBUG Processing 193/236 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,623 DEBUG Processing 639/1025 atomic regions from SNP 191470 to 192070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,742 DEBUG Processing 727/858 atomic regions from SNP 217849 to 218449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,826 DEBUG Processing 701/899 atomic regions from SNP 210130 to 210730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,833 DEBUG Processing 598/1136 atomic regions from SNP 179225 to 179825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,863 DEBUG Processing 518/650 atomic regions from SNP 155126 to 155726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,863 DEBUG Processing 194/236 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,905 DEBUG Processing 640/1025 atomic regions from SNP 191770 to 192370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,022 DEBUG Processing 728/858 atomic regions from SNP 218149 to 218749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,084 DEBUG Processing 702/899 atomic regions from SNP 210430 to 211030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,118 DEBUG Processing 599/1136 atomic regions from SNP 179525 to 180125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,121 DEBUG Processing 195/236 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,144 DEBUG Processing 519/650 atomic regions from SNP 155426 to 156026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,188 DEBUG Processing 641/1025 atomic regions from SNP 192070 to 192670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,296 DEBUG Processing 729/858 atomic regions from SNP 218449 to 219049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,341 DEBUG Processing 703/899 atomic regions from SNP 210730 to 211330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,374 DEBUG Processing 196/236 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,402 DEBUG Processing 600/1136 atomic regions from SNP 179825 to 180425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,425 DEBUG Processing 520/650 atomic regions from SNP 155726 to 156326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,470 DEBUG Processing 642/1025 atomic regions from SNP 192370 to 192970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,541 DEBUG Processing 730/858 atomic regions from SNP 218749 to 219349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,600 DEBUG Processing 704/899 atomic regions from SNP 211030 to 211630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,609 DEBUG Processing 197/236 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,686 DEBUG Processing 601/1136 atomic regions from SNP 180125 to 180725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,716 DEBUG Processing 521/650 atomic regions from SNP 156026 to 156626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,763 DEBUG Processing 643/1025 atomic regions from SNP 192670 to 193270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,784 DEBUG Processing 731/858 atomic regions from SNP 219049 to 219649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,831 DEBUG Processing 198/236 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,853 DEBUG Processing 705/899 atomic regions from SNP 211330 to 211930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,975 DEBUG Processing 602/1136 atomic regions from SNP 180425 to 181025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,014 DEBUG Processing 522/650 atomic regions from SNP 156326 to 156926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,043 DEBUG Processing 732/858 atomic regions from SNP 219349 to 219949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,069 DEBUG Processing 199/236 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,075 DEBUG Processing 644/1025 atomic regions from SNP 192970 to 193570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,112 DEBUG Processing 706/899 atomic regions from SNP 211630 to 212230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,289 DEBUG Processing 603/1136 atomic regions from SNP 180725 to 181325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,292 DEBUG Processing 523/650 atomic regions from SNP 156626 to 157226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,295 DEBUG Processing 733/858 atomic regions from SNP 219649 to 220249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,311 DEBUG Processing 200/236 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,358 DEBUG Processing 645/1025 atomic regions from SNP 193270 to 193870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,368 DEBUG Processing 707/899 atomic regions from SNP 211930 to 212530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,545 DEBUG Processing 201/236 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,550 DEBUG Processing 734/858 atomic regions from SNP 219949 to 220549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,583 DEBUG Processing 524/650 atomic regions from SNP 156926 to 157526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,601 DEBUG Processing 604/1136 atomic regions from SNP 181025 to 181625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,635 DEBUG Processing 708/899 atomic regions from SNP 212230 to 212830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,638 DEBUG Processing 646/1025 atomic regions from SNP 193570 to 194170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,788 DEBUG Processing 202/236 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,805 DEBUG Processing 735/858 atomic regions from SNP 220249 to 220849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,878 DEBUG Processing 525/650 atomic regions from SNP 157226 to 157826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,892 DEBUG Processing 605/1136 atomic regions from SNP 181325 to 181925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,903 DEBUG Processing 709/899 atomic regions from SNP 212530 to 213130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,918 DEBUG Processing 647/1025 atomic regions from SNP 193870 to 194470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,039 DEBUG Processing 203/236 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,061 DEBUG Processing 736/858 atomic regions from SNP 220549 to 221149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,172 DEBUG Processing 526/650 atomic regions from SNP 157526 to 158126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,177 DEBUG Processing 710/899 atomic regions from SNP 212830 to 213430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,182 DEBUG Processing 606/1136 atomic regions from SNP 181625 to 182225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,200 DEBUG Processing 648/1025 atomic regions from SNP 194170 to 194770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,284 DEBUG Processing 204/236 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,317 DEBUG Processing 737/858 atomic regions from SNP 220849 to 221449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,461 DEBUG Processing 711/899 atomic regions from SNP 213130 to 213730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,470 DEBUG Processing 527/650 atomic regions from SNP 157826 to 158426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,477 DEBUG Processing 649/1025 atomic regions from SNP 194470 to 195070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,477 DEBUG Processing 607/1136 atomic regions from SNP 181925 to 182525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,541 DEBUG Processing 205/236 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,573 DEBUG Processing 738/858 atomic regions from SNP 221149 to 221749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,753 DEBUG Processing 712/899 atomic regions from SNP 213430 to 214030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,754 DEBUG Processing 650/1025 atomic regions from SNP 194770 to 195370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,765 DEBUG Processing 528/650 atomic regions from SNP 158126 to 158726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,773 DEBUG Processing 608/1136 atomic regions from SNP 182225 to 182825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,782 DEBUG Processing 206/236 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,832 DEBUG Processing 739/858 atomic regions from SNP 221449 to 222049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,017 DEBUG Processing 207/236 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,027 DEBUG Processing 651/1025 atomic regions from SNP 195070 to 195670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,050 DEBUG Processing 713/899 atomic regions from SNP 213730 to 214330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,061 DEBUG Processing 609/1136 atomic regions from SNP 182525 to 183125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,067 DEBUG Processing 529/650 atomic regions from SNP 158426 to 159026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,091 DEBUG Processing 740/858 atomic regions from SNP 221749 to 222349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,256 DEBUG Processing 208/236 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,306 DEBUG Processing 652/1025 atomic regions from SNP 195370 to 195970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,341 DEBUG Processing 714/899 atomic regions from SNP 214030 to 214630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,354 DEBUG Processing 741/858 atomic regions from SNP 222049 to 222649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,355 DEBUG Processing 610/1136 atomic regions from SNP 182825 to 183425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,368 DEBUG Processing 530/650 atomic regions from SNP 158726 to 159326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,495 DEBUG Processing 209/236 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,584 DEBUG Processing 653/1025 atomic regions from SNP 195670 to 196270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,617 DEBUG Processing 742/858 atomic regions from SNP 222349 to 222949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,634 DEBUG Processing 715/899 atomic regions from SNP 214330 to 214930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,646 DEBUG Processing 611/1136 atomic regions from SNP 183125 to 183725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,655 DEBUG Processing 531/650 atomic regions from SNP 159026 to 159626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,734 DEBUG Processing 210/236 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,857 DEBUG Processing 654/1025 atomic regions from SNP 195970 to 196570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,880 DEBUG Processing 743/858 atomic regions from SNP 222649 to 223249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,902 DEBUG Processing 716/899 atomic regions from SNP 214630 to 215230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,931 DEBUG Processing 612/1136 atomic regions from SNP 183425 to 184025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,937 DEBUG Processing 532/650 atomic regions from SNP 159326 to 159926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,963 DEBUG Processing 211/236 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,126 DEBUG Processing 655/1025 atomic regions from SNP 196270 to 196870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,139 DEBUG Processing 744/858 atomic regions from SNP 222949 to 223549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,171 DEBUG Processing 717/899 atomic regions from SNP 214930 to 215530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,203 DEBUG Processing 212/236 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,230 DEBUG Processing 613/1136 atomic regions from SNP 183725 to 184325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,235 DEBUG Processing 533/650 atomic regions from SNP 159626 to 160226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,395 DEBUG Processing 745/858 atomic regions from SNP 223249 to 223849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,395 DEBUG Processing 656/1025 atomic regions from SNP 196570 to 197170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,441 DEBUG Processing 718/899 atomic regions from SNP 215230 to 215830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,445 DEBUG Processing 213/236 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,521 DEBUG Processing 614/1136 atomic regions from SNP 184025 to 184625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,529 DEBUG Processing 534/650 atomic regions from SNP 159926 to 160526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,653 DEBUG Processing 746/858 atomic regions from SNP 223549 to 224149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,673 DEBUG Processing 657/1025 atomic regions from SNP 196870 to 197470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,686 DEBUG Processing 214/236 atomic regions from SNP 64113 to 64713 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,706 DEBUG Processing 719/899 atomic regions from SNP 215530 to 216130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,801 DEBUG Processing 615/1136 atomic regions from SNP 184325 to 184925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,821 DEBUG Processing 535/650 atomic regions from SNP 160226 to 160826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,916 DEBUG Processing 747/858 atomic regions from SNP 223849 to 224449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,933 DEBUG Processing 215/236 atomic regions from SNP 64413 to 65013 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,953 DEBUG Processing 658/1025 atomic regions from SNP 197170 to 197770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,970 DEBUG Processing 720/899 atomic regions from SNP 215830 to 216430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,076 DEBUG Processing 616/1136 atomic regions from SNP 184625 to 185225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,115 DEBUG Processing 536/650 atomic regions from SNP 160526 to 161126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,178 DEBUG Processing 748/858 atomic regions from SNP 224149 to 224749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,180 DEBUG Processing 216/236 atomic regions from SNP 64713 to 65313 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,232 DEBUG Processing 659/1025 atomic regions from SNP 197470 to 198070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,238 DEBUG Processing 721/899 atomic regions from SNP 216130 to 216730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,358 DEBUG Processing 617/1136 atomic regions from SNP 184925 to 185525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,403 DEBUG Processing 537/650 atomic regions from SNP 160826 to 161426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,420 DEBUG Processing 217/236 atomic regions from SNP 65013 to 65613 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,442 DEBUG Processing 749/858 atomic regions from SNP 224449 to 225049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,507 DEBUG Processing 722/899 atomic regions from SNP 216430 to 217030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,510 DEBUG Processing 660/1025 atomic regions from SNP 197770 to 198370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,634 DEBUG Processing 618/1136 atomic regions from SNP 185225 to 185825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,652 DEBUG Processing 218/236 atomic regions from SNP 65313 to 65913 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,692 DEBUG Processing 538/650 atomic regions from SNP 161126 to 161726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,702 DEBUG Processing 750/858 atomic regions from SNP 224749 to 225349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,773 DEBUG Processing 723/899 atomic regions from SNP 216730 to 217330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,782 DEBUG Processing 661/1025 atomic regions from SNP 198070 to 198670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,878 DEBUG Processing 219/236 atomic regions from SNP 65613 to 66213 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,914 DEBUG Processing 619/1136 atomic regions from SNP 185525 to 186125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,960 DEBUG Processing 751/858 atomic regions from SNP 225049 to 225649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,966 DEBUG Processing 539/650 atomic regions from SNP 161426 to 162026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,047 DEBUG Processing 724/899 atomic regions from SNP 217030 to 217630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,051 DEBUG Processing 662/1025 atomic regions from SNP 198370 to 198970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,107 DEBUG Processing 220/236 atomic regions from SNP 65913 to 66513 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,193 DEBUG Processing 620/1136 atomic regions from SNP 185825 to 186425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,216 DEBUG Processing 752/858 atomic regions from SNP 225349 to 225949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,231 DEBUG Processing 540/650 atomic regions from SNP 161726 to 162326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,325 DEBUG Processing 663/1025 atomic regions from SNP 198670 to 199270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,337 DEBUG Processing 725/899 atomic regions from SNP 217330 to 217930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,343 DEBUG Processing 221/236 atomic regions from SNP 66213 to 66813 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,483 DEBUG Processing 621/1136 atomic regions from SNP 186125 to 186725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,497 DEBUG Processing 753/858 atomic regions from SNP 225649 to 226249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,524 DEBUG Processing 541/650 atomic regions from SNP 162026 to 162626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,574 DEBUG Processing 222/236 atomic regions from SNP 66513 to 67113 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,604 DEBUG Processing 664/1025 atomic regions from SNP 198970 to 199570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,634 DEBUG Processing 726/899 atomic regions from SNP 217630 to 218230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,768 DEBUG Processing 622/1136 atomic regions from SNP 186425 to 187025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,787 DEBUG Processing 754/858 atomic regions from SNP 225949 to 226549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,805 DEBUG Processing 542/650 atomic regions from SNP 162326 to 162926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,805 DEBUG Processing 223/236 atomic regions from SNP 66813 to 67413 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,877 DEBUG Processing 665/1025 atomic regions from SNP 199270 to 199870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,930 DEBUG Processing 727/899 atomic regions from SNP 217930 to 218530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,032 DEBUG Processing 224/236 atomic regions from SNP 67113 to 67713 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,051 DEBUG Processing 623/1136 atomic regions from SNP 186725 to 187325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,059 DEBUG Processing 755/858 atomic regions from SNP 226249 to 226849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,081 DEBUG Processing 543/650 atomic regions from SNP 162626 to 163226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,147 DEBUG Processing 666/1025 atomic regions from SNP 199570 to 200170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,218 DEBUG Processing 728/899 atomic regions from SNP 218230 to 218830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,262 DEBUG Processing 225/236 atomic regions from SNP 67413 to 68013 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,336 DEBUG Processing 624/1136 atomic regions from SNP 187025 to 187625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,344 DEBUG Processing 756/858 atomic regions from SNP 226549 to 227149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,369 DEBUG Processing 544/650 atomic regions from SNP 162926 to 163526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,424 DEBUG Processing 667/1025 atomic regions from SNP 199870 to 200470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,491 DEBUG Processing 729/899 atomic regions from SNP 218530 to 219130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,495 DEBUG Processing 226/236 atomic regions from SNP 67713 to 68313 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,613 DEBUG Processing 757/858 atomic regions from SNP 226849 to 227449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,623 DEBUG Processing 625/1136 atomic regions from SNP 187325 to 187925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,645 DEBUG Processing 545/650 atomic regions from SNP 163226 to 163826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,702 DEBUG Processing 668/1025 atomic regions from SNP 200170 to 200770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,729 DEBUG Processing 227/236 atomic regions from SNP 68013 to 68613 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,745 DEBUG Processing 730/899 atomic regions from SNP 218830 to 219430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,908 DEBUG Processing 758/858 atomic regions from SNP 227149 to 227749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,914 DEBUG Processing 626/1136 atomic regions from SNP 187625 to 188225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,933 DEBUG Processing 546/650 atomic regions from SNP 163526 to 164126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,964 DEBUG Processing 228/236 atomic regions from SNP 68313 to 68913 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:28,987 DEBUG Processing 669/1025 atomic regions from SNP 200470 to 201070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,999 DEBUG Processing 731/899 atomic regions from SNP 219130 to 219730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,201 DEBUG Processing 229/236 atomic regions from SNP 68613 to 69213 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,207 DEBUG Processing 627/1136 atomic regions from SNP 187925 to 188525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,209 DEBUG Processing 759/858 atomic regions from SNP 227449 to 228049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,228 DEBUG Processing 547/650 atomic regions from SNP 163826 to 164426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,265 DEBUG Processing 670/1025 atomic regions from SNP 200770 to 201370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,277 DEBUG Processing 732/899 atomic regions from SNP 219430 to 220030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,439 DEBUG Processing 230/236 atomic regions from SNP 68913 to 69513 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,499 DEBUG Processing 760/858 atomic regions from SNP 227749 to 228349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,499 DEBUG Processing 628/1136 atomic regions from SNP 188225 to 188825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,520 DEBUG Processing 548/650 atomic regions from SNP 164126 to 164726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,538 DEBUG Processing 671/1025 atomic regions from SNP 201070 to 201670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,565 DEBUG Processing 733/899 atomic regions from SNP 219730 to 220330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,671 DEBUG Processing 231/236 atomic regions from SNP 69213 to 69813 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:29,780 DEBUG Processing 761/858 atomic regions from SNP 228049 to 228649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,790 DEBUG Processing 629/1136 atomic regions from SNP 188525 to 189125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,804 DEBUG Processing 549/650 atomic regions from SNP 164426 to 165026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,814 DEBUG Processing 672/1025 atomic regions from SNP 201370 to 201970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,825 DEBUG Processing 734/899 atomic regions from SNP 220030 to 220630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,899 DEBUG Processing 232/236 atomic regions from SNP 69513 to 70113 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,048 DEBUG Processing 762/858 atomic regions from SNP 228349 to 228949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,074 DEBUG Processing 630/1136 atomic regions from SNP 188825 to 189425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,074 DEBUG Processing 550/650 atomic regions from SNP 164726 to 165326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,083 DEBUG Processing 673/1025 atomic regions from SNP 201670 to 202270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,089 DEBUG Processing 735/899 atomic regions from SNP 220330 to 220930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,130 DEBUG Processing 233/236 atomic regions from SNP 69813 to 70413 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,315 DEBUG Processing 763/858 atomic regions from SNP 228649 to 229249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,355 DEBUG Processing 674/1025 atomic regions from SNP 201970 to 202570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,357 DEBUG Processing 631/1136 atomic regions from SNP 189125 to 189725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,359 DEBUG Processing 551/650 atomic regions from SNP 165026 to 165626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,359 DEBUG Processing 736/899 atomic regions from SNP 220630 to 221230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,362 DEBUG Processing 234/236 atomic regions from SNP 70113 to 70713 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,580 DEBUG Processing 764/858 atomic regions from SNP 228949 to 229549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,593 DEBUG Processing 235/236 atomic regions from SNP 70413 to 71013 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,625 DEBUG Processing 675/1025 atomic regions from SNP 202270 to 202870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,632 DEBUG Processing 552/650 atomic regions from SNP 165326 to 165926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,639 DEBUG Processing 737/899 atomic regions from SNP 220930 to 221530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,640 DEBUG Processing 632/1136 atomic regions from SNP 189425 to 190025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,820 DEBUG Processing 236/236 atomic regions from SNP 70713 to 71313 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:30,852 DEBUG Processing 765/858 atomic regions from SNP 229249 to 229849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,893 DEBUG Processing 553/650 atomic regions from SNP 165626 to 166226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,896 DEBUG Processing 676/1025 atomic regions from SNP 202570 to 203170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,917 DEBUG Processing 738/899 atomic regions from SNP 221230 to 221830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,926 DEBUG Processing 633/1136 atomic regions from SNP 189725 to 190325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,939 DEBUG Unique SNPs positions in subchromosome 6: 71314 2025-01-31 09:46:31,038 DEBUG Subchromosome time: 64.31473488733172, subchromosome SNPs: 71314 2025-01-31 09:46:31,039 DEBUG Estimated BADs: [1.20, 4.80, 2.40, 0.60, 1.20, 0.00, 0.00, 2.40, 0.60, 3.60, 1.20, 12.00, 1.20, 3.60, 1.20, 0.60, 10.80, 1.20, 2.40, 0.60, 0.00, 0.60, 1.20, 12.00] SNP counts: [3924, 718, 10879, 2701, 14718, 3, 52, 5802, 14946, 717, 3618, 155, 35543, 1912, 15177, 13659, 61, 11479, 12333, 28080, 3, 13041, 58238, 35] SNP IDs counts: [3924, 718, 10879, 2701, 14718, 3, 52, 5802, 14946, 717, 3618, 155, 35543, 1912, 15177, 13659, 61, 11479, 12333, 28080, 3, 13041, 58238, 35] Critical gap: 747300bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.06Mbp], 7.55Mbp, 7.92Mbp, 14.28Mbp, 15.90Mbp, 26.91Mbp[1.11Mbp], 28.03Mbp[1.53Mbp], 29.68Mbp[1.45Mbp], 39.06Mbp, 47.99Mbp, 48.36Mbp, 50.55Mbp, 50.64Mbp, 73.03Mbp, 74.22Mbp, 83.77Mbp, 91.99Mbp, 92.05Mbp, 99.00Mbp, 106.01Mbp, 124.25Mbp[0.87Mbp], 125.12Mbp[0.89Mbp], 133.87Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:31,039 DEBUG chrX time: 64.31540668010712 s 2025-01-31 09:46:31,124 DEBUG Processing 766/858 atomic regions from SNP 229549 to 230149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,156 DEBUG Processing 554/650 atomic regions from SNP 165926 to 166526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,167 DEBUG Processing 677/1025 atomic regions from SNP 202870 to 203470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,183 DEBUG Processing 739/899 atomic regions from SNP 221530 to 222130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,209 DEBUG Processing 634/1136 atomic regions from SNP 190025 to 190625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,223 DEBUG chrX: Fitting background model for 21 segments 2025-01-31 09:46:31,368 DEBUG Processing 767/858 atomic regions from SNP 229849 to 230449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,412 DEBUG Processing 555/650 atomic regions from SNP 166226 to 166826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,436 DEBUG Processing 678/1025 atomic regions from SNP 203170 to 203770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,443 DEBUG Processing 740/899 atomic regions from SNP 221830 to 222430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,489 DEBUG Processing 635/1136 atomic regions from SNP 190325 to 190925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,626 DEBUG Processing 768/858 atomic regions from SNP 230149 to 230749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,687 DEBUG Processing 556/650 atomic regions from SNP 166526 to 167126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,704 DEBUG Processing 679/1025 atomic regions from SNP 203470 to 204070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,704 DEBUG Processing 741/899 atomic regions from SNP 222130 to 222730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,764 DEBUG Processing 636/1136 atomic regions from SNP 190625 to 191225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,881 DEBUG Processing 769/858 atomic regions from SNP 230449 to 231049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,969 DEBUG Processing 742/899 atomic regions from SNP 222430 to 223030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,974 DEBUG Processing 680/1025 atomic regions from SNP 203770 to 204370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,976 DEBUG Processing 557/650 atomic regions from SNP 166826 to 167426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,039 DEBUG Processing 637/1136 atomic regions from SNP 190925 to 191525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,144 DEBUG Processing 770/858 atomic regions from SNP 230749 to 231349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,234 DEBUG Processing 743/899 atomic regions from SNP 222730 to 223330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,242 DEBUG Processing 681/1025 atomic regions from SNP 204070 to 204670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,253 DEBUG Processing 558/650 atomic regions from SNP 167126 to 167726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,313 DEBUG Processing 638/1136 atomic regions from SNP 191225 to 191825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,415 DEBUG Processing 771/858 atomic regions from SNP 231049 to 231649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,489 DEBUG Processing 744/899 atomic regions from SNP 223030 to 223630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,519 DEBUG Processing 682/1025 atomic regions from SNP 204370 to 204970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,521 DEBUG Processing 559/650 atomic regions from SNP 167426 to 168026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,586 DEBUG Processing 639/1136 atomic regions from SNP 191525 to 192125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,690 DEBUG Processing 772/858 atomic regions from SNP 231349 to 231949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,742 DEBUG Processing 745/899 atomic regions from SNP 223330 to 223930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,789 DEBUG Processing 560/650 atomic regions from SNP 167726 to 168326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,813 DEBUG Processing 683/1025 atomic regions from SNP 204670 to 205270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,858 DEBUG Processing 640/1136 atomic regions from SNP 191825 to 192425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,976 DEBUG Processing 773/858 atomic regions from SNP 231649 to 232249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,001 DEBUG Processing 746/899 atomic regions from SNP 223630 to 224230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,058 DEBUG Processing 561/650 atomic regions from SNP 168026 to 168626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,114 DEBUG Processing 684/1025 atomic regions from SNP 204970 to 205570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,137 DEBUG Processing 641/1136 atomic regions from SNP 192125 to 192725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,261 DEBUG Processing 747/899 atomic regions from SNP 223930 to 224530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,265 DEBUG Processing 774/858 atomic regions from SNP 231949 to 232549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,312 DEBUG Processing 562/650 atomic regions from SNP 168326 to 168926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,393 DEBUG Processing 685/1025 atomic regions from SNP 205270 to 205870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,418 DEBUG Processing 642/1136 atomic regions from SNP 192425 to 193025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,518 DEBUG Processing 748/899 atomic regions from SNP 224230 to 224830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,548 DEBUG Processing 775/858 atomic regions from SNP 232249 to 232849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,564 DEBUG Processing 563/650 atomic regions from SNP 168626 to 169226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,683 DEBUG Processing 686/1025 atomic regions from SNP 205570 to 206170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,701 DEBUG Processing 643/1136 atomic regions from SNP 192725 to 193325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,778 DEBUG Processing 749/899 atomic regions from SNP 224530 to 225130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,815 DEBUG Processing 776/858 atomic regions from SNP 232549 to 233149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,818 DEBUG Processing 564/650 atomic regions from SNP 168926 to 169526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,969 DEBUG Processing 687/1025 atomic regions from SNP 205870 to 206470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,988 DEBUG Processing 644/1136 atomic regions from SNP 193025 to 193625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,039 DEBUG Processing 750/899 atomic regions from SNP 224830 to 225430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,079 DEBUG Processing 565/650 atomic regions from SNP 169226 to 169826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,085 DEBUG Processing 777/858 atomic regions from SNP 232849 to 233449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,257 DEBUG Processing 688/1025 atomic regions from SNP 206170 to 206770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,279 DEBUG Processing 645/1136 atomic regions from SNP 193325 to 193925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,301 DEBUG Processing 751/899 atomic regions from SNP 225130 to 225730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,361 DEBUG Processing 566/650 atomic regions from SNP 169526 to 170126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,368 DEBUG Processing 778/858 atomic regions from SNP 233149 to 233749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,551 DEBUG Processing 689/1025 atomic regions from SNP 206470 to 207070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,564 DEBUG Processing 752/899 atomic regions from SNP 225430 to 226030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,570 DEBUG Processing 646/1136 atomic regions from SNP 193625 to 194225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,632 DEBUG Processing 779/858 atomic regions from SNP 233449 to 234049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,658 DEBUG Processing 567/650 atomic regions from SNP 169826 to 170426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,823 DEBUG Processing 753/899 atomic regions from SNP 225730 to 226330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,834 DEBUG Processing 690/1025 atomic regions from SNP 206770 to 207370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,863 DEBUG Processing 647/1136 atomic regions from SNP 193925 to 194525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,902 DEBUG Processing 780/858 atomic regions from SNP 233749 to 234349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,958 DEBUG Processing 568/650 atomic regions from SNP 170126 to 170726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,073 DEBUG Processing 754/899 atomic regions from SNP 226030 to 226630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,120 DEBUG Processing 691/1025 atomic regions from SNP 207070 to 207670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,153 DEBUG Processing 648/1136 atomic regions from SNP 194225 to 194825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,163 DEBUG Processing 781/858 atomic regions from SNP 234049 to 234649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,257 DEBUG Processing 569/650 atomic regions from SNP 170426 to 171026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,326 DEBUG Processing 755/899 atomic regions from SNP 226330 to 226930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,400 DEBUG Processing 692/1025 atomic regions from SNP 207370 to 207970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,433 DEBUG Processing 782/858 atomic regions from SNP 234349 to 234949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,441 DEBUG Processing 649/1136 atomic regions from SNP 194525 to 195125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,537 DEBUG Processing 570/650 atomic regions from SNP 170726 to 171326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,597 DEBUG Processing 756/899 atomic regions from SNP 226630 to 227230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,668 DEBUG Processing 693/1025 atomic regions from SNP 207670 to 208270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,697 DEBUG Processing 783/858 atomic regions from SNP 234649 to 235249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,725 DEBUG Processing 650/1136 atomic regions from SNP 194825 to 195425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,812 DEBUG Processing 571/650 atomic regions from SNP 171026 to 171626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,852 DEBUG Processing 757/899 atomic regions from SNP 226930 to 227530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,931 DEBUG Processing 694/1025 atomic regions from SNP 207970 to 208570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,965 DEBUG Processing 784/858 atomic regions from SNP 234949 to 235549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,003 DEBUG Processing 651/1136 atomic regions from SNP 195125 to 195725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,088 DEBUG Processing 572/650 atomic regions from SNP 171326 to 171926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,108 DEBUG Processing 758/899 atomic regions from SNP 227230 to 227830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,200 DEBUG Processing 695/1025 atomic regions from SNP 208270 to 208870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,241 DEBUG Processing 785/858 atomic regions from SNP 235249 to 235849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,277 DEBUG Processing 652/1136 atomic regions from SNP 195425 to 196025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,367 DEBUG Processing 573/650 atomic regions from SNP 171626 to 172226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,387 DEBUG Processing 759/899 atomic regions from SNP 227530 to 228130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,467 DEBUG Processing 696/1025 atomic regions from SNP 208570 to 209170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,499 DEBUG Processing 786/858 atomic regions from SNP 235549 to 236149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,556 DEBUG Processing 653/1136 atomic regions from SNP 195725 to 196325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,643 DEBUG Processing 574/650 atomic regions from SNP 171926 to 172526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,676 DEBUG Processing 760/899 atomic regions from SNP 227830 to 228430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,739 DEBUG Processing 697/1025 atomic regions from SNP 208870 to 209470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,775 DEBUG Processing 787/858 atomic regions from SNP 235849 to 236449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,828 DEBUG Processing 654/1136 atomic regions from SNP 196025 to 196625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,900 DEBUG Processing 575/650 atomic regions from SNP 172226 to 172826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,958 DEBUG Processing 761/899 atomic regions from SNP 228130 to 228730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,015 DEBUG Processing 698/1025 atomic regions from SNP 209170 to 209770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,048 DEBUG Processing 788/858 atomic regions from SNP 236149 to 236749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,097 DEBUG Processing 655/1136 atomic regions from SNP 196325 to 196925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,152 DEBUG Processing 576/650 atomic regions from SNP 172526 to 173126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,235 DEBUG Processing 762/899 atomic regions from SNP 228430 to 229030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,290 DEBUG Processing 699/1025 atomic regions from SNP 209470 to 210070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,314 DEBUG Processing 789/858 atomic regions from SNP 236449 to 237049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,375 DEBUG Processing 656/1136 atomic regions from SNP 196625 to 197225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,390 DEBUG Processing 577/650 atomic regions from SNP 172826 to 173426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,515 DEBUG Processing 763/899 atomic regions from SNP 228730 to 229330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,579 DEBUG Processing 790/858 atomic regions from SNP 236749 to 237349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,582 DEBUG Processing 700/1025 atomic regions from SNP 209770 to 210370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,631 DEBUG Processing 578/650 atomic regions from SNP 173126 to 173726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,659 DEBUG Processing 657/1136 atomic regions from SNP 196925 to 197525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,777 DEBUG Processing 764/899 atomic regions from SNP 229030 to 229630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,857 DEBUG Processing 791/858 atomic regions from SNP 237049 to 237649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,867 DEBUG Processing 701/1025 atomic regions from SNP 210070 to 210670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,884 DEBUG Processing 579/650 atomic regions from SNP 173426 to 174026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,948 DEBUG Processing 658/1136 atomic regions from SNP 197225 to 197825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,036 DEBUG Processing 765/899 atomic regions from SNP 229330 to 229930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,139 DEBUG Processing 580/650 atomic regions from SNP 173726 to 174326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,141 DEBUG Processing 792/858 atomic regions from SNP 237349 to 237949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,146 DEBUG Processing 702/1025 atomic regions from SNP 210370 to 210970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,235 DEBUG Processing 659/1136 atomic regions from SNP 197525 to 198125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,286 DEBUG Processing 766/899 atomic regions from SNP 229630 to 230230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,397 DEBUG Processing 581/650 atomic regions from SNP 174026 to 174626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,422 DEBUG Processing 703/1025 atomic regions from SNP 210670 to 211270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,438 DEBUG Processing 793/858 atomic regions from SNP 237649 to 238249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,521 DEBUG Processing 660/1136 atomic regions from SNP 197825 to 198425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,544 DEBUG Processing 767/899 atomic regions from SNP 229930 to 230530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,651 DEBUG Processing 582/650 atomic regions from SNP 174326 to 174926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,692 DEBUG Processing 704/1025 atomic regions from SNP 210970 to 211570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,711 DEBUG Processing 794/858 atomic regions from SNP 237949 to 238549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,800 DEBUG Processing 768/899 atomic regions from SNP 230230 to 230830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,802 DEBUG Processing 661/1136 atomic regions from SNP 198125 to 198725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,903 DEBUG Processing 583/650 atomic regions from SNP 174626 to 175226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,966 DEBUG Processing 795/858 atomic regions from SNP 238249 to 238849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,969 DEBUG Processing 705/1025 atomic regions from SNP 211270 to 211870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,052 DEBUG Processing 769/899 atomic regions from SNP 230530 to 231130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,081 DEBUG Processing 662/1136 atomic regions from SNP 198425 to 199025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,153 DEBUG Processing 584/650 atomic regions from SNP 174926 to 175526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,216 DEBUG Processing 796/858 atomic regions from SNP 238549 to 239149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,252 DEBUG Processing 706/1025 atomic regions from SNP 211570 to 212170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,305 DEBUG Processing 770/899 atomic regions from SNP 230830 to 231430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,355 DEBUG Processing 663/1136 atomic regions from SNP 198725 to 199325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,405 DEBUG Processing 585/650 atomic regions from SNP 175226 to 175826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,465 DEBUG Processing 797/858 atomic regions from SNP 238849 to 239449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,517 DEBUG Processing 707/1025 atomic regions from SNP 211870 to 212470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,555 DEBUG Processing 771/899 atomic regions from SNP 231130 to 231730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,630 DEBUG Processing 664/1136 atomic regions from SNP 199025 to 199625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,655 DEBUG Processing 586/650 atomic regions from SNP 175526 to 176126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,715 DEBUG Processing 798/858 atomic regions from SNP 239149 to 239749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,779 DEBUG Processing 708/1025 atomic regions from SNP 212170 to 212770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,808 DEBUG Processing 772/899 atomic regions from SNP 231430 to 232030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,902 DEBUG Processing 665/1136 atomic regions from SNP 199325 to 199925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,903 DEBUG Processing 587/650 atomic regions from SNP 175826 to 176426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,957 DEBUG Processing 799/858 atomic regions from SNP 239449 to 240049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,039 DEBUG Processing 709/1025 atomic regions from SNP 212470 to 213070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,062 DEBUG Processing 773/899 atomic regions from SNP 231730 to 232330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,152 DEBUG Processing 588/650 atomic regions from SNP 176126 to 176726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,181 DEBUG Processing 666/1136 atomic regions from SNP 199625 to 200225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,200 DEBUG Processing 800/858 atomic regions from SNP 239749 to 240349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,297 DEBUG Processing 710/1025 atomic regions from SNP 212770 to 213370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,313 DEBUG Processing 774/899 atomic regions from SNP 232030 to 232630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,408 DEBUG Processing 589/650 atomic regions from SNP 176426 to 177026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,449 DEBUG Processing 801/858 atomic regions from SNP 240049 to 240649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,467 DEBUG Processing 667/1136 atomic regions from SNP 199925 to 200525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,563 DEBUG Processing 775/899 atomic regions from SNP 232330 to 232930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,565 DEBUG Processing 711/1025 atomic regions from SNP 213070 to 213670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,669 DEBUG Processing 590/650 atomic regions from SNP 176726 to 177326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,704 DEBUG Processing 802/858 atomic regions from SNP 240349 to 240949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,752 DEBUG Processing 668/1136 atomic regions from SNP 200225 to 200825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,806 DEBUG Processing 776/899 atomic regions from SNP 232630 to 233230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,826 DEBUG Processing 712/1025 atomic regions from SNP 213370 to 213970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,940 DEBUG Processing 591/650 atomic regions from SNP 177026 to 177626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,964 DEBUG Processing 803/858 atomic regions from SNP 240649 to 241249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,031 DEBUG Processing 669/1136 atomic regions from SNP 200525 to 201125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,054 DEBUG Processing 777/899 atomic regions from SNP 232930 to 233530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,087 DEBUG Processing 713/1025 atomic regions from SNP 213670 to 214270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,207 DEBUG Processing 592/650 atomic regions from SNP 177326 to 177926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,254 DEBUG Processing 804/858 atomic regions from SNP 240949 to 241549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,311 DEBUG Processing 670/1136 atomic regions from SNP 200825 to 201425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,313 DEBUG Processing 778/899 atomic regions from SNP 233230 to 233830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,352 DEBUG Processing 714/1025 atomic regions from SNP 213970 to 214570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,464 DEBUG Processing 593/650 atomic regions from SNP 177626 to 178226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,542 DEBUG Processing 805/858 atomic regions from SNP 241249 to 241849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,577 DEBUG Processing 779/899 atomic regions from SNP 233530 to 234130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,593 DEBUG Processing 671/1136 atomic regions from SNP 201125 to 201725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,622 DEBUG Processing 715/1025 atomic regions from SNP 214270 to 214870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,713 DEBUG Processing 594/650 atomic regions from SNP 177926 to 178526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,827 DEBUG Processing 806/858 atomic regions from SNP 241549 to 242149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,838 DEBUG Processing 780/899 atomic regions from SNP 233830 to 234430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,888 DEBUG Processing 716/1025 atomic regions from SNP 214570 to 215170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,898 DEBUG Processing 672/1136 atomic regions from SNP 201425 to 202025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,954 DEBUG Processing 595/650 atomic regions from SNP 178226 to 178826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,110 DEBUG Processing 781/899 atomic regions from SNP 234130 to 234730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,122 DEBUG Processing 807/858 atomic regions from SNP 241849 to 242449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,163 DEBUG Processing 717/1025 atomic regions from SNP 214870 to 215470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,208 DEBUG Processing 596/650 atomic regions from SNP 178526 to 179126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,217 DEBUG Processing 673/1136 atomic regions from SNP 201725 to 202325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,377 DEBUG Processing 782/899 atomic regions from SNP 234430 to 235030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,402 DEBUG Processing 808/858 atomic regions from SNP 242149 to 242749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,436 DEBUG Processing 718/1025 atomic regions from SNP 215170 to 215770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,479 DEBUG Processing 597/650 atomic regions from SNP 178826 to 179426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,519 DEBUG Processing 674/1136 atomic regions from SNP 202025 to 202625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,631 DEBUG Processing 783/899 atomic regions from SNP 234730 to 235330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,671 DEBUG Processing 809/858 atomic regions from SNP 242449 to 243049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,705 DEBUG Processing 719/1025 atomic regions from SNP 215470 to 216070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,734 DEBUG Processing 598/650 atomic regions from SNP 179126 to 179726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,808 DEBUG Processing 675/1136 atomic regions from SNP 202325 to 202925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,883 DEBUG Processing 784/899 atomic regions from SNP 235030 to 235630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,946 DEBUG Processing 810/858 atomic regions from SNP 242749 to 243349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,976 DEBUG Processing 720/1025 atomic regions from SNP 215770 to 216370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,003 DEBUG Processing 599/650 atomic regions from SNP 179426 to 180026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,092 DEBUG Processing 676/1136 atomic regions from SNP 202625 to 203225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,138 DEBUG Processing 785/899 atomic regions from SNP 235330 to 235930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,225 DEBUG Processing 811/858 atomic regions from SNP 243049 to 243649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,241 DEBUG Processing 721/1025 atomic regions from SNP 216070 to 216670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,280 DEBUG Processing 600/650 atomic regions from SNP 179726 to 180326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,384 DEBUG Processing 677/1136 atomic regions from SNP 202925 to 203525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,399 DEBUG Processing 786/899 atomic regions from SNP 235630 to 236230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,499 DEBUG Processing 812/858 atomic regions from SNP 243349 to 243949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,514 DEBUG Processing 722/1025 atomic regions from SNP 216370 to 216970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,547 DEBUG Processing 601/650 atomic regions from SNP 180026 to 180626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,664 DEBUG Processing 787/899 atomic regions from SNP 235930 to 236530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,672 DEBUG Processing 678/1136 atomic regions from SNP 203225 to 203825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,775 DEBUG Processing 813/858 atomic regions from SNP 243649 to 244249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,784 DEBUG Processing 723/1025 atomic regions from SNP 216670 to 217270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,824 DEBUG Processing 602/650 atomic regions from SNP 180326 to 180926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,914 DEBUG Processing 788/899 atomic regions from SNP 236230 to 236830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,970 DEBUG Processing 679/1136 atomic regions from SNP 203525 to 204125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,048 DEBUG Processing 814/858 atomic regions from SNP 243949 to 244549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,060 DEBUG Processing 724/1025 atomic regions from SNP 216970 to 217570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,095 DEBUG Processing 603/650 atomic regions from SNP 180626 to 181226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,165 DEBUG Processing 789/899 atomic regions from SNP 236530 to 237130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,275 DEBUG Processing 680/1136 atomic regions from SNP 203825 to 204425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,333 DEBUG Processing 815/858 atomic regions from SNP 244249 to 244849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,339 DEBUG Processing 725/1025 atomic regions from SNP 217270 to 217870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,375 DEBUG Processing 604/650 atomic regions from SNP 180926 to 181526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,418 DEBUG Processing 790/899 atomic regions from SNP 236830 to 237430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,563 DEBUG Processing 681/1136 atomic regions from SNP 204125 to 204725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,596 DEBUG Processing 816/858 atomic regions from SNP 244549 to 245149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,624 DEBUG Processing 726/1025 atomic regions from SNP 217570 to 218170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,653 DEBUG Processing 605/650 atomic regions from SNP 181226 to 181826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,671 DEBUG Processing 791/899 atomic regions from SNP 237130 to 237730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,839 DEBUG Processing 817/858 atomic regions from SNP 244849 to 245449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,862 DEBUG Processing 682/1136 atomic regions from SNP 204425 to 205025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,906 DEBUG Processing 727/1025 atomic regions from SNP 217870 to 218470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,919 DEBUG Processing 606/650 atomic regions from SNP 181526 to 182126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,931 DEBUG Processing 792/899 atomic regions from SNP 237430 to 238030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,078 DEBUG Processing 818/858 atomic regions from SNP 245149 to 245749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,166 DEBUG Processing 683/1136 atomic regions from SNP 204725 to 205325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,181 DEBUG Processing 728/1025 atomic regions from SNP 218170 to 218770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,185 DEBUG Processing 607/650 atomic regions from SNP 181826 to 182426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,192 DEBUG Processing 793/899 atomic regions from SNP 237730 to 238330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,331 DEBUG Processing 819/858 atomic regions from SNP 245449 to 246049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,446 DEBUG Processing 608/650 atomic regions from SNP 182126 to 182726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,450 DEBUG Processing 794/899 atomic regions from SNP 238030 to 238630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,455 DEBUG Processing 729/1025 atomic regions from SNP 218470 to 219070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,486 DEBUG Processing 684/1136 atomic regions from SNP 205025 to 205625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,593 DEBUG Processing 820/858 atomic regions from SNP 245749 to 246349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,717 DEBUG Processing 795/899 atomic regions from SNP 238330 to 238930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,722 DEBUG Processing 609/650 atomic regions from SNP 182426 to 183026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,728 DEBUG Processing 730/1025 atomic regions from SNP 218770 to 219370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,800 DEBUG Processing 685/1136 atomic regions from SNP 205325 to 205925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,863 DEBUG Processing 821/858 atomic regions from SNP 246049 to 246649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,973 DEBUG Processing 796/899 atomic regions from SNP 238630 to 239230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,994 DEBUG Processing 610/650 atomic regions from SNP 182726 to 183326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,994 DEBUG Processing 731/1025 atomic regions from SNP 219070 to 219670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,092 DEBUG Processing 686/1136 atomic regions from SNP 205625 to 206225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,101 DEBUG Processing 822/858 atomic regions from SNP 246349 to 246949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,225 DEBUG Processing 797/899 atomic regions from SNP 238930 to 239530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,263 DEBUG Processing 611/650 atomic regions from SNP 183026 to 183626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,264 DEBUG Processing 732/1025 atomic regions from SNP 219370 to 219970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,348 DEBUG Processing 823/858 atomic regions from SNP 246649 to 247249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,377 DEBUG Processing 687/1136 atomic regions from SNP 205925 to 206525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,477 DEBUG Processing 798/899 atomic regions from SNP 239230 to 239830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,530 DEBUG Processing 733/1025 atomic regions from SNP 219670 to 220270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,537 DEBUG Processing 612/650 atomic regions from SNP 183326 to 183926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,590 DEBUG Processing 824/858 atomic regions from SNP 246949 to 247549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,668 DEBUG Processing 688/1136 atomic regions from SNP 206225 to 206825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,732 DEBUG Processing 799/899 atomic regions from SNP 239530 to 240130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,794 DEBUG Processing 734/1025 atomic regions from SNP 219970 to 220570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,820 DEBUG Processing 613/650 atomic regions from SNP 183626 to 184226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,836 DEBUG Processing 825/858 atomic regions from SNP 247249 to 247849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,955 DEBUG Processing 689/1136 atomic regions from SNP 206525 to 207125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,990 DEBUG Processing 800/899 atomic regions from SNP 239830 to 240430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,078 DEBUG Processing 735/1025 atomic regions from SNP 220270 to 220870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,094 DEBUG Processing 826/858 atomic regions from SNP 247549 to 248149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,098 DEBUG Processing 614/650 atomic regions from SNP 183926 to 184526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,238 DEBUG Processing 690/1136 atomic regions from SNP 206825 to 207425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,254 DEBUG Processing 801/899 atomic regions from SNP 240130 to 240730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,352 DEBUG Processing 827/858 atomic regions from SNP 247849 to 248449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,366 DEBUG Processing 736/1025 atomic regions from SNP 220570 to 221170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,369 DEBUG Processing 615/650 atomic regions from SNP 184226 to 184826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,519 DEBUG Processing 802/899 atomic regions from SNP 240430 to 241030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,528 DEBUG Processing 691/1136 atomic regions from SNP 207125 to 207725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,608 DEBUG Processing 828/858 atomic regions from SNP 248149 to 248749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,647 DEBUG Processing 737/1025 atomic regions from SNP 220870 to 221470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,656 DEBUG Processing 616/650 atomic regions from SNP 184526 to 185126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,774 DEBUG Processing 803/899 atomic regions from SNP 240730 to 241330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,826 DEBUG Processing 692/1136 atomic regions from SNP 207425 to 208025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,876 DEBUG Processing 829/858 atomic regions from SNP 248449 to 249049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,908 DEBUG Processing 738/1025 atomic regions from SNP 221170 to 221770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,930 DEBUG Processing 617/650 atomic regions from SNP 184826 to 185426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,034 DEBUG Processing 804/899 atomic regions from SNP 241030 to 241630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,115 DEBUG Processing 693/1136 atomic regions from SNP 207725 to 208325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,149 DEBUG Processing 830/858 atomic regions from SNP 248749 to 249349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,172 DEBUG Processing 739/1025 atomic regions from SNP 221470 to 222070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,221 DEBUG Processing 618/650 atomic regions from SNP 185126 to 185726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,293 DEBUG Processing 805/899 atomic regions from SNP 241330 to 241930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,410 DEBUG Processing 694/1136 atomic regions from SNP 208025 to 208625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,411 DEBUG Processing 831/858 atomic regions from SNP 249049 to 249649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,439 DEBUG Processing 740/1025 atomic regions from SNP 221770 to 222370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,500 DEBUG Processing 619/650 atomic regions from SNP 185426 to 186026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,563 DEBUG Processing 806/899 atomic regions from SNP 241630 to 242230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,663 DEBUG Processing 832/858 atomic regions from SNP 249349 to 249949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,685 DEBUG Processing 695/1136 atomic regions from SNP 208325 to 208925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,710 DEBUG Processing 741/1025 atomic regions from SNP 222070 to 222670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,754 DEBUG Processing 620/650 atomic regions from SNP 185726 to 186326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,816 DEBUG Processing 807/899 atomic regions from SNP 241930 to 242530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,902 DEBUG Processing 833/858 atomic regions from SNP 249649 to 250249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,971 DEBUG Processing 696/1136 atomic regions from SNP 208625 to 209225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,984 DEBUG Processing 742/1025 atomic regions from SNP 222370 to 222970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,013 DEBUG Processing 621/650 atomic regions from SNP 186026 to 186626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,073 DEBUG Processing 808/899 atomic regions from SNP 242230 to 242830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,143 DEBUG Processing 834/858 atomic regions from SNP 249949 to 250549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,251 DEBUG Processing 743/1025 atomic regions from SNP 222670 to 223270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,252 DEBUG Processing 697/1136 atomic regions from SNP 208925 to 209525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,268 DEBUG Processing 622/650 atomic regions from SNP 186326 to 186926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,335 DEBUG Processing 809/899 atomic regions from SNP 242530 to 243130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,389 DEBUG Processing 835/858 atomic regions from SNP 250249 to 250849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,517 DEBUG Processing 744/1025 atomic regions from SNP 222970 to 223570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,534 DEBUG Processing 698/1136 atomic regions from SNP 209225 to 209825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,535 DEBUG Processing 623/650 atomic regions from SNP 186626 to 187226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,605 DEBUG Processing 810/899 atomic regions from SNP 242830 to 243430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,645 DEBUG Processing 836/858 atomic regions from SNP 250549 to 251149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,799 DEBUG Processing 745/1025 atomic regions from SNP 223270 to 223870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,811 DEBUG Processing 624/650 atomic regions from SNP 186926 to 187526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,821 DEBUG Processing 699/1136 atomic regions from SNP 209525 to 210125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,868 DEBUG Processing 811/899 atomic regions from SNP 243130 to 243730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,903 DEBUG Processing 837/858 atomic regions from SNP 250849 to 251449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,086 DEBUG Processing 746/1025 atomic regions from SNP 223570 to 224170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,108 DEBUG Processing 625/650 atomic regions from SNP 187226 to 187826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,113 DEBUG Processing 700/1136 atomic regions from SNP 209825 to 210425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,133 DEBUG Processing 812/899 atomic regions from SNP 243430 to 244030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,164 DEBUG Processing 838/858 atomic regions from SNP 251149 to 251749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,385 DEBUG Processing 747/1025 atomic regions from SNP 223870 to 224470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,401 DEBUG Processing 701/1136 atomic regions from SNP 210125 to 210725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,401 DEBUG Processing 813/899 atomic regions from SNP 243730 to 244330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,402 DEBUG Processing 626/650 atomic regions from SNP 187526 to 188126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,424 DEBUG Processing 839/858 atomic regions from SNP 251449 to 252049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,660 DEBUG Processing 814/899 atomic regions from SNP 244030 to 244630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,666 DEBUG Processing 748/1025 atomic regions from SNP 224170 to 224770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,687 DEBUG Processing 627/650 atomic regions from SNP 187826 to 188426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,689 DEBUG Processing 840/858 atomic regions from SNP 251749 to 252349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,693 DEBUG Processing 702/1136 atomic regions from SNP 210425 to 211025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,917 DEBUG Processing 815/899 atomic regions from SNP 244330 to 244930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,938 DEBUG Processing 749/1025 atomic regions from SNP 224470 to 225070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,951 DEBUG Processing 841/858 atomic regions from SNP 252049 to 252649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,959 DEBUG Processing 628/650 atomic regions from SNP 188126 to 188726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,980 DEBUG Processing 703/1136 atomic regions from SNP 210725 to 211325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,166 DEBUG Processing 816/899 atomic regions from SNP 244630 to 245230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,210 DEBUG Processing 750/1025 atomic regions from SNP 224770 to 225370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,212 DEBUG Processing 842/858 atomic regions from SNP 252349 to 252949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,215 DEBUG Processing 629/650 atomic regions from SNP 188426 to 189026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,262 DEBUG Processing 704/1136 atomic regions from SNP 211025 to 211625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,421 DEBUG Processing 817/899 atomic regions from SNP 244930 to 245530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,472 DEBUG Processing 630/650 atomic regions from SNP 188726 to 189326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,477 DEBUG Processing 751/1025 atomic regions from SNP 225070 to 225670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,479 DEBUG Processing 843/858 atomic regions from SNP 252649 to 253249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,547 DEBUG Processing 705/1136 atomic regions from SNP 211325 to 211925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,680 DEBUG Processing 818/899 atomic regions from SNP 245230 to 245830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,732 DEBUG Processing 631/650 atomic regions from SNP 189026 to 189626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,749 DEBUG Processing 752/1025 atomic regions from SNP 225370 to 225970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,760 DEBUG Processing 844/858 atomic regions from SNP 252949 to 253549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,821 DEBUG Processing 706/1136 atomic regions from SNP 211625 to 212225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,936 DEBUG Processing 819/899 atomic regions from SNP 245530 to 246130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,993 DEBUG Processing 632/650 atomic regions from SNP 189326 to 189926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,022 DEBUG Processing 753/1025 atomic regions from SNP 225670 to 226270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,026 DEBUG Processing 845/858 atomic regions from SNP 253249 to 253849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,088 DEBUG Processing 707/1136 atomic regions from SNP 211925 to 212525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,189 DEBUG Processing 820/899 atomic regions from SNP 245830 to 246430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,264 DEBUG Processing 633/650 atomic regions from SNP 189626 to 190226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,281 DEBUG Processing 846/858 atomic regions from SNP 253549 to 254149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,305 DEBUG Processing 754/1025 atomic regions from SNP 225970 to 226570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,362 DEBUG Processing 708/1136 atomic regions from SNP 212225 to 212825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,439 DEBUG Processing 821/899 atomic regions from SNP 246130 to 246730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,524 DEBUG Processing 634/650 atomic regions from SNP 189926 to 190526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,555 DEBUG Processing 847/858 atomic regions from SNP 253849 to 254449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,582 DEBUG Processing 755/1025 atomic regions from SNP 226270 to 226870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,641 DEBUG Processing 709/1136 atomic regions from SNP 212525 to 213125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,687 DEBUG Processing 822/899 atomic regions from SNP 246430 to 247030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,780 DEBUG Processing 635/650 atomic regions from SNP 190226 to 190826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,824 DEBUG Processing 848/858 atomic regions from SNP 254149 to 254749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,877 DEBUG Processing 756/1025 atomic regions from SNP 226570 to 227170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,923 DEBUG Processing 710/1136 atomic regions from SNP 212825 to 213425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,942 DEBUG Processing 823/899 atomic regions from SNP 246730 to 247330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,035 DEBUG Processing 636/650 atomic regions from SNP 190526 to 191126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,088 DEBUG Processing 849/858 atomic regions from SNP 254449 to 255049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,159 DEBUG Processing 757/1025 atomic regions from SNP 226870 to 227470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,204 DEBUG Processing 711/1136 atomic regions from SNP 213125 to 213725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,221 DEBUG Processing 824/899 atomic regions from SNP 247030 to 247630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,314 DEBUG Processing 637/650 atomic regions from SNP 190826 to 191426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,337 DEBUG Processing 850/858 atomic regions from SNP 254749 to 255349 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,421 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:46:53,437 DEBUG Processing 758/1025 atomic regions from SNP 227170 to 227770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,475 DEBUG Processing 825/899 atomic regions from SNP 247330 to 247930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,487 DEBUG Processing 712/1136 atomic regions from SNP 213425 to 214025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,587 DEBUG Processing 851/858 atomic regions from SNP 255049 to 255649 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,608 DEBUG Processing 638/650 atomic regions from SNP 191126 to 191726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,734 DEBUG Processing 826/899 atomic regions from SNP 247630 to 248230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,745 DEBUG Processing 759/1025 atomic regions from SNP 227470 to 228070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,774 DEBUG Processing 713/1136 atomic regions from SNP 213725 to 214325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,843 DEBUG Processing 852/858 atomic regions from SNP 255349 to 255949 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,896 DEBUG Processing 639/650 atomic regions from SNP 191426 to 192026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,010 DEBUG Processing 827/899 atomic regions from SNP 247930 to 248530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,051 DEBUG Processing 760/1025 atomic regions from SNP 227770 to 228370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,066 DEBUG Processing 714/1136 atomic regions from SNP 214025 to 214625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,101 DEBUG Processing 853/858 atomic regions from SNP 255649 to 256249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,167 DEBUG Processing 640/650 atomic regions from SNP 191726 to 192326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,284 DEBUG Processing 828/899 atomic regions from SNP 248230 to 248830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,338 DEBUG Processing 761/1025 atomic regions from SNP 228070 to 228670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,366 DEBUG Processing 854/858 atomic regions from SNP 255949 to 256549 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,375 DEBUG Processing 715/1136 atomic regions from SNP 214325 to 214925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,443 DEBUG Processing 641/650 atomic regions from SNP 192026 to 192626 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,545 DEBUG Processing 829/899 atomic regions from SNP 248530 to 249130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,622 DEBUG Processing 762/1025 atomic regions from SNP 228370 to 228970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,623 DEBUG Processing 855/858 atomic regions from SNP 256249 to 256849 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,676 DEBUG Processing 716/1136 atomic regions from SNP 214625 to 215225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,704 DEBUG Processing 642/650 atomic regions from SNP 192326 to 192926 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,806 DEBUG Processing 830/899 atomic regions from SNP 248830 to 249430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,885 DEBUG Processing 856/858 atomic regions from SNP 256549 to 257149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,897 DEBUG Processing 763/1025 atomic regions from SNP 228670 to 229270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,964 DEBUG Processing 717/1136 atomic regions from SNP 214925 to 215525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,991 DEBUG Processing 643/650 atomic regions from SNP 192626 to 193226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,058 DEBUG Processing 831/899 atomic regions from SNP 249130 to 249730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,137 DEBUG Processing 857/858 atomic regions from SNP 256849 to 257449 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,175 DEBUG Processing 764/1025 atomic regions from SNP 228970 to 229570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,246 DEBUG Processing 718/1136 atomic regions from SNP 215225 to 215825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,274 DEBUG Processing 644/650 atomic regions from SNP 192926 to 193526 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,303 DEBUG Processing 832/899 atomic regions from SNP 249430 to 250030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,401 DEBUG Processing 858/858 atomic regions from SNP 257149 to 257749 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,448 DEBUG Processing 765/1025 atomic regions from SNP 229270 to 229870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,528 DEBUG Processing 719/1136 atomic regions from SNP 215525 to 216125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,533 DEBUG Unique SNPs positions in subchromosome 1: 257750 2025-01-31 09:46:55,555 DEBUG Processing 645/650 atomic regions from SNP 193226 to 193826 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,555 DEBUG Processing 833/899 atomic regions from SNP 249730 to 250330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,733 DEBUG Processing 766/1025 atomic regions from SNP 229570 to 230170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,812 DEBUG Processing 720/1136 atomic regions from SNP 215825 to 216425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,812 DEBUG Processing 834/899 atomic regions from SNP 250030 to 250630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,841 DEBUG Processing 646/650 atomic regions from SNP 193526 to 194126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,002 DEBUG Processing 767/1025 atomic regions from SNP 229870 to 230470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,065 DEBUG Processing 835/899 atomic regions from SNP 250330 to 250930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,095 DEBUG Processing 721/1136 atomic regions from SNP 216125 to 216725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,110 DEBUG Processing 647/650 atomic regions from SNP 193826 to 194426 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,269 DEBUG Processing 768/1025 atomic regions from SNP 230170 to 230770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,317 DEBUG Processing 836/899 atomic regions from SNP 250630 to 251230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,380 DEBUG Processing 722/1136 atomic regions from SNP 216425 to 217025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,391 DEBUG Processing 648/650 atomic regions from SNP 194126 to 194726 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,541 DEBUG Processing 769/1025 atomic regions from SNP 230470 to 231070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,566 DEBUG Processing 837/899 atomic regions from SNP 250930 to 251530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,659 DEBUG Processing 723/1136 atomic regions from SNP 216725 to 217325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,678 DEBUG Processing 649/650 atomic regions from SNP 194426 to 195026 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,808 DEBUG Processing 770/1025 atomic regions from SNP 230770 to 231370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,818 DEBUG Processing 838/899 atomic regions from SNP 251230 to 251830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,937 DEBUG Processing 724/1136 atomic regions from SNP 217025 to 217625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,959 DEBUG Processing 650/650 atomic regions from SNP 194726 to 195326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,071 DEBUG Processing 771/1025 atomic regions from SNP 231070 to 231670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,075 DEBUG Processing 839/899 atomic regions from SNP 251530 to 252130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,122 DEBUG Unique SNPs positions in subchromosome 2: 195327 2025-01-31 09:46:57,213 DEBUG Processing 725/1136 atomic regions from SNP 217325 to 217925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,378 DEBUG Processing 772/1025 atomic regions from SNP 231370 to 231970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,384 DEBUG Processing 840/899 atomic regions from SNP 251830 to 252430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,554 DEBUG Processing 726/1136 atomic regions from SNP 217625 to 218225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,624 DEBUG Processing 841/899 atomic regions from SNP 252130 to 252730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,646 DEBUG Processing 773/1025 atomic regions from SNP 231670 to 232270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,850 DEBUG Processing 727/1136 atomic regions from SNP 217925 to 218525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,866 DEBUG Processing 842/899 atomic regions from SNP 252430 to 253030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,920 DEBUG Processing 774/1025 atomic regions from SNP 231970 to 232570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,112 DEBUG Processing 843/899 atomic regions from SNP 252730 to 253330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,136 DEBUG Processing 728/1136 atomic regions from SNP 218225 to 218825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,187 DEBUG Processing 775/1025 atomic regions from SNP 232270 to 232870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,363 DEBUG Processing 844/899 atomic regions from SNP 253030 to 253630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,424 DEBUG Processing 729/1136 atomic regions from SNP 218525 to 219125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,456 DEBUG Processing 776/1025 atomic regions from SNP 232570 to 233170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,619 DEBUG Processing 845/899 atomic regions from SNP 253330 to 253930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,716 DEBUG Processing 730/1136 atomic regions from SNP 218825 to 219425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,731 DEBUG Processing 777/1025 atomic regions from SNP 232870 to 233470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,873 DEBUG Processing 846/899 atomic regions from SNP 253630 to 254230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,004 DEBUG Processing 778/1025 atomic regions from SNP 233170 to 233770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,010 DEBUG Processing 731/1136 atomic regions from SNP 219125 to 219725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,152 DEBUG Processing 847/899 atomic regions from SNP 253930 to 254530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,280 DEBUG Processing 779/1025 atomic regions from SNP 233470 to 234070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,305 DEBUG Processing 732/1136 atomic regions from SNP 219425 to 220025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,399 DEBUG Processing 848/899 atomic regions from SNP 254230 to 254830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,549 DEBUG Processing 780/1025 atomic regions from SNP 233770 to 234370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,605 DEBUG Processing 733/1136 atomic regions from SNP 219725 to 220325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,653 DEBUG Processing 849/899 atomic regions from SNP 254530 to 255130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,814 DEBUG Processing 781/1025 atomic regions from SNP 234070 to 234670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,904 DEBUG Processing 850/899 atomic regions from SNP 254830 to 255430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,906 DEBUG Processing 734/1136 atomic regions from SNP 220025 to 220625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,077 DEBUG Processing 782/1025 atomic regions from SNP 234370 to 234970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,163 DEBUG Processing 851/899 atomic regions from SNP 255130 to 255730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,193 DEBUG Processing 735/1136 atomic regions from SNP 220325 to 220925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,331 DEBUG Processing 783/1025 atomic regions from SNP 234670 to 235270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,427 DEBUG Processing 852/899 atomic regions from SNP 255430 to 256030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,483 DEBUG Processing 736/1136 atomic regions from SNP 220625 to 221225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,593 DEBUG Processing 784/1025 atomic regions from SNP 234970 to 235570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,698 DEBUG Processing 853/899 atomic regions from SNP 255730 to 256330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,763 DEBUG Processing 737/1136 atomic regions from SNP 220925 to 221525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,851 DEBUG Processing 785/1025 atomic regions from SNP 235270 to 235870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,953 DEBUG Processing 854/899 atomic regions from SNP 256030 to 256630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,036 DEBUG Processing 738/1136 atomic regions from SNP 221225 to 221825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,109 DEBUG Processing 786/1025 atomic regions from SNP 235570 to 236170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,199 DEBUG Processing 855/899 atomic regions from SNP 256330 to 256930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,314 DEBUG Processing 739/1136 atomic regions from SNP 221525 to 222125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,368 DEBUG Processing 787/1025 atomic regions from SNP 235870 to 236470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,446 DEBUG Processing 856/899 atomic regions from SNP 256630 to 257230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,586 DEBUG Processing 740/1136 atomic regions from SNP 221825 to 222425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,630 DEBUG Processing 788/1025 atomic regions from SNP 236170 to 236770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,700 DEBUG Processing 857/899 atomic regions from SNP 256930 to 257530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,856 DEBUG Processing 741/1136 atomic regions from SNP 222125 to 222725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,895 DEBUG Processing 789/1025 atomic regions from SNP 236470 to 237070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,950 DEBUG Processing 858/899 atomic regions from SNP 257230 to 257830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,131 DEBUG Processing 742/1136 atomic regions from SNP 222425 to 223025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,161 DEBUG Processing 790/1025 atomic regions from SNP 236770 to 237370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,200 DEBUG Processing 859/899 atomic regions from SNP 257530 to 258130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,409 DEBUG Processing 743/1136 atomic regions from SNP 222725 to 223325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,433 DEBUG Processing 791/1025 atomic regions from SNP 237070 to 237670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,449 DEBUG Processing 860/899 atomic regions from SNP 257830 to 258430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,686 DEBUG Processing 744/1136 atomic regions from SNP 223025 to 223625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,701 DEBUG Processing 792/1025 atomic regions from SNP 237370 to 237970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,703 DEBUG Processing 861/899 atomic regions from SNP 258130 to 258730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,962 DEBUG Processing 862/899 atomic regions from SNP 258430 to 259030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,978 DEBUG Processing 793/1025 atomic regions from SNP 237670 to 238270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,978 DEBUG Processing 745/1136 atomic regions from SNP 223325 to 223925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,223 DEBUG Processing 863/899 atomic regions from SNP 258730 to 259330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,251 DEBUG Processing 794/1025 atomic regions from SNP 237970 to 238570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,266 DEBUG Processing 746/1136 atomic regions from SNP 223625 to 224225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,483 DEBUG Processing 864/899 atomic regions from SNP 259030 to 259630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,520 DEBUG Processing 795/1025 atomic regions from SNP 238270 to 238870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,554 DEBUG Processing 747/1136 atomic regions from SNP 223925 to 224525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,740 DEBUG Processing 865/899 atomic regions from SNP 259330 to 259930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,790 DEBUG Processing 796/1025 atomic regions from SNP 238570 to 239170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,851 DEBUG Processing 748/1136 atomic regions from SNP 224225 to 224825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,006 DEBUG Processing 866/899 atomic regions from SNP 259630 to 260230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,058 DEBUG Processing 797/1025 atomic regions from SNP 238870 to 239470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,155 DEBUG Processing 749/1136 atomic regions from SNP 224525 to 225125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,268 DEBUG Processing 867/899 atomic regions from SNP 259930 to 260530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,324 DEBUG Processing 798/1025 atomic regions from SNP 239170 to 239770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,461 DEBUG Processing 750/1136 atomic regions from SNP 224825 to 225425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,531 DEBUG Processing 868/899 atomic regions from SNP 260230 to 260830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,588 DEBUG Processing 799/1025 atomic regions from SNP 239470 to 240070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,757 DEBUG Processing 751/1136 atomic regions from SNP 225125 to 225725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,795 DEBUG Processing 869/899 atomic regions from SNP 260530 to 261130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,845 DEBUG Processing 800/1025 atomic regions from SNP 239770 to 240370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,058 DEBUG Processing 752/1136 atomic regions from SNP 225425 to 226025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,064 DEBUG Processing 870/899 atomic regions from SNP 260830 to 261430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,107 DEBUG Processing 801/1025 atomic regions from SNP 240070 to 240670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,335 DEBUG Processing 871/899 atomic regions from SNP 261130 to 261730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,361 DEBUG Processing 753/1136 atomic regions from SNP 225725 to 226325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,378 DEBUG Processing 802/1025 atomic regions from SNP 240370 to 240970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,600 DEBUG Processing 872/899 atomic regions from SNP 261430 to 262030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,649 DEBUG Processing 803/1025 atomic regions from SNP 240670 to 241270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,661 DEBUG Processing 754/1136 atomic regions from SNP 226025 to 226625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,858 DEBUG Processing 873/899 atomic regions from SNP 261730 to 262330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,922 DEBUG Processing 804/1025 atomic regions from SNP 240970 to 241570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,969 DEBUG Processing 755/1136 atomic regions from SNP 226325 to 226925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,111 DEBUG Processing 874/899 atomic regions from SNP 262030 to 262630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,187 DEBUG Processing 805/1025 atomic regions from SNP 241270 to 241870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,276 DEBUG Processing 756/1136 atomic regions from SNP 226625 to 227225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,364 DEBUG Processing 875/899 atomic regions from SNP 262330 to 262930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,453 DEBUG Processing 806/1025 atomic regions from SNP 241570 to 242170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,587 DEBUG Processing 757/1136 atomic regions from SNP 226925 to 227525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,628 DEBUG Processing 876/899 atomic regions from SNP 262630 to 263230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,716 DEBUG Processing 807/1025 atomic regions from SNP 241870 to 242470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,889 DEBUG Processing 877/899 atomic regions from SNP 262930 to 263530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,893 DEBUG Processing 758/1136 atomic regions from SNP 227225 to 227825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,980 DEBUG Processing 808/1025 atomic regions from SNP 242170 to 242770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,148 DEBUG Processing 878/899 atomic regions from SNP 263230 to 263830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,205 DEBUG Processing 759/1136 atomic regions from SNP 227525 to 228125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,248 DEBUG Processing 809/1025 atomic regions from SNP 242470 to 243070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,402 DEBUG Processing 879/899 atomic regions from SNP 263530 to 264130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,509 DEBUG Processing 760/1136 atomic regions from SNP 227825 to 228425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,527 DEBUG Processing 810/1025 atomic regions from SNP 242770 to 243370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,654 DEBUG Processing 880/899 atomic regions from SNP 263830 to 264430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,823 DEBUG Processing 811/1025 atomic regions from SNP 243070 to 243670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,834 DEBUG Processing 761/1136 atomic regions from SNP 228125 to 228725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,904 DEBUG Processing 881/899 atomic regions from SNP 264130 to 264730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,110 DEBUG Processing 812/1025 atomic regions from SNP 243370 to 243970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,157 DEBUG Processing 882/899 atomic regions from SNP 264430 to 265030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,158 DEBUG Processing 762/1136 atomic regions from SNP 228425 to 229025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,386 DEBUG Processing 813/1025 atomic regions from SNP 243670 to 244270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,415 DEBUG Processing 883/899 atomic regions from SNP 264730 to 265330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,470 DEBUG Processing 763/1136 atomic regions from SNP 228725 to 229325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,652 DEBUG Processing 814/1025 atomic regions from SNP 243970 to 244570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,666 DEBUG Processing 884/899 atomic regions from SNP 265030 to 265630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,769 DEBUG Processing 764/1136 atomic regions from SNP 229025 to 229625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,913 DEBUG Processing 815/1025 atomic regions from SNP 244270 to 244870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,922 DEBUG Processing 885/899 atomic regions from SNP 265330 to 265930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,985 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:47:08,987 DEBUG chr6: Signal quantile: 0.995. signal threshold: 13. Best RMSEA: 0.017 2025-01-31 09:47:09,065 DEBUG Processing 765/1136 atomic regions from SNP 229325 to 229925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,176 DEBUG Processing 816/1025 atomic regions from SNP 244570 to 245170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,181 DEBUG Processing 886/899 atomic regions from SNP 265630 to 266230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,391 DEBUG Processing 766/1136 atomic regions from SNP 229625 to 230225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,443 DEBUG Processing 887/899 atomic regions from SNP 265930 to 266530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,453 DEBUG Processing 817/1025 atomic regions from SNP 244870 to 245470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,712 DEBUG Processing 888/899 atomic regions from SNP 266230 to 266830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,717 DEBUG Processing 767/1136 atomic regions from SNP 229925 to 230525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,728 DEBUG Processing 818/1025 atomic regions from SNP 245170 to 245770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,778 DEBUG Subchromosome time: 207.09318886324763, subchromosome SNPs: 195327 2025-01-31 09:47:09,778 DEBUG Estimated BADs: [0.75, 1.50, 0.50, 1.50, 0.50, 3.01, 3.01, 0.50, 1.50, 0.38, 0.75, 0.30, 0.75, 1.50, 3.01, 0.75, 0.15, 1.50, 3.01, 4.51, 1.50, 3.01, 4.51] SNP counts: [9083, 13293, 27483, 3819, 9173, 3054, 11221, 5086, 19525, 26979, 16213, 5392, 14180, 10460, 6867, 2525, 2835, 3063, 28175, 19238, 7468, 11666, 4434] SNP IDs counts: [9083, 13293, 27483, 3819, 9173, 3054, 11221, 5086, 19525, 26979, 16213, 5392, 14180, 10460, 6867, 2525, 2835, 3063, 28175, 19238, 7468, 11666, 4434] Critical gap: 685297bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.63Mbp, 16.24Mbp, 32.56Mbp, 34.65Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 48.77Mbp, 51.83Mbp, 64.31Mbp, 80.51Mbp, 89.68Mbp, 92.97Mbp, 100.99Mbp, 106.70Mbp, 110.40Mbp, 111.90Mbp, 113.93Mbp, 115.82Mbp, 131.74Mbp, 141.79Mbp, 147.87Mbp, 153.94Mbp, 156.51Mbp] 2025-01-31 09:47:09,778 DEBUG chr4 time: 207.09389369562268 s 2025-01-31 09:47:09,987 DEBUG chr4: Fitting background model for 23 segments 2025-01-31 09:47:10,021 DEBUG Processing 889/899 atomic regions from SNP 266530 to 267130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,043 DEBUG Processing 819/1025 atomic regions from SNP 245470 to 246070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,067 DEBUG Processing 768/1136 atomic regions from SNP 230225 to 230825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,366 DEBUG Processing 890/899 atomic regions from SNP 266830 to 267430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,396 DEBUG Processing 820/1025 atomic regions from SNP 245770 to 246370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,455 DEBUG Processing 769/1136 atomic regions from SNP 230525 to 231125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,690 DEBUG Processing 891/899 atomic regions from SNP 267130 to 267730 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,745 DEBUG Processing 821/1025 atomic regions from SNP 246070 to 246670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,817 DEBUG Processing 770/1136 atomic regions from SNP 230825 to 231425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,946 DEBUG Processing 892/899 atomic regions from SNP 267430 to 268030 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,030 DEBUG Processing 822/1025 atomic regions from SNP 246370 to 246970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,153 DEBUG Processing 771/1136 atomic regions from SNP 231125 to 231725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,202 DEBUG Processing 893/899 atomic regions from SNP 267730 to 268330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,302 DEBUG Processing 823/1025 atomic regions from SNP 246670 to 247270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,462 DEBUG Processing 894/899 atomic regions from SNP 268030 to 268630 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,468 DEBUG Processing 772/1136 atomic regions from SNP 231425 to 232025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,567 DEBUG Processing 824/1025 atomic regions from SNP 246970 to 247570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,721 DEBUG Processing 895/899 atomic regions from SNP 268330 to 268930 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,772 DEBUG Processing 773/1136 atomic regions from SNP 231725 to 232325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,845 DEBUG Processing 825/1025 atomic regions from SNP 247270 to 247870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,985 DEBUG Processing 896/899 atomic regions from SNP 268630 to 269230 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,996 DEBUG chr6 total SNP count: 257459 2025-01-31 09:47:11,996 DEBUG chr6 length: 149736546 2025-01-31 09:47:11,996 DEBUG ----------------------------------------- 2025-01-31 09:47:11,996 INFO Processing SNPs in chr6 2025-01-31 09:47:12,085 DEBUG Processing 774/1136 atomic regions from SNP 232025 to 232625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,118 DEBUG Processing 826/1025 atomic regions from SNP 247570 to 248170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,248 DEBUG Processing 897/899 atomic regions from SNP 268930 to 269530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,253 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 257459)] 2025-01-31 09:47:12,389 DEBUG Processing 827/1025 atomic regions from SNP 247870 to 248470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,399 DEBUG Processing 775/1136 atomic regions from SNP 232325 to 232925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,429 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:12,517 DEBUG Processing 898/899 atomic regions from SNP 269230 to 269830 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,665 DEBUG Processing 828/1025 atomic regions from SNP 248170 to 248770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,717 DEBUG Processing 776/1136 atomic regions from SNP 232625 to 233225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,787 DEBUG Processing 899/899 atomic regions from SNP 269530 to 270130 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,943 DEBUG Unique SNPs positions in subchromosome 1: 270131 2025-01-31 09:47:12,945 DEBUG Processing 829/1025 atomic regions from SNP 248470 to 249070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,025 DEBUG Processing 777/1136 atomic regions from SNP 232925 to 233525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,225 DEBUG Processing 830/1025 atomic regions from SNP 248770 to 249370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,332 DEBUG Processing 778/1136 atomic regions from SNP 233225 to 233825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,501 DEBUG Processing 831/1025 atomic regions from SNP 249070 to 249670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,649 DEBUG Processing 779/1136 atomic regions from SNP 233525 to 234125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,769 DEBUG Processing 832/1025 atomic regions from SNP 249370 to 249970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,979 DEBUG Processing 780/1136 atomic regions from SNP 233825 to 234425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,040 DEBUG Processing 833/1025 atomic regions from SNP 249670 to 250270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,303 DEBUG Processing 781/1136 atomic regions from SNP 234125 to 234725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,318 DEBUG Processing 834/1025 atomic regions from SNP 249970 to 250570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,599 DEBUG Processing 835/1025 atomic regions from SNP 250270 to 250870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,622 DEBUG Processing 782/1136 atomic regions from SNP 234425 to 235025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,897 DEBUG Processing 836/1025 atomic regions from SNP 250570 to 251170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,939 DEBUG Processing 783/1136 atomic regions from SNP 234725 to 235325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,180 DEBUG Processing 837/1025 atomic regions from SNP 250870 to 251470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,249 DEBUG Processing 784/1136 atomic regions from SNP 235025 to 235625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,458 DEBUG Processing 838/1025 atomic regions from SNP 251170 to 251770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,562 DEBUG Processing 785/1136 atomic regions from SNP 235325 to 235925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,732 DEBUG Processing 839/1025 atomic regions from SNP 251470 to 252070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,859 DEBUG Processing 786/1136 atomic regions from SNP 235625 to 236225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,001 DEBUG Processing 840/1025 atomic regions from SNP 251770 to 252370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,149 DEBUG Processing 787/1136 atomic regions from SNP 235925 to 236525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,268 DEBUG Processing 841/1025 atomic regions from SNP 252070 to 252670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,431 DEBUG Processing 788/1136 atomic regions from SNP 236225 to 236825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,537 DEBUG Processing 842/1025 atomic regions from SNP 252370 to 252970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,715 DEBUG Processing 789/1136 atomic regions from SNP 236525 to 237125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,804 DEBUG Processing 843/1025 atomic regions from SNP 252670 to 253270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,005 DEBUG Processing 790/1136 atomic regions from SNP 236825 to 237425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,075 DEBUG Processing 844/1025 atomic regions from SNP 252970 to 253570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,291 DEBUG Processing 791/1136 atomic regions from SNP 237125 to 237725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,345 DEBUG Processing 845/1025 atomic regions from SNP 253270 to 253870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,575 DEBUG Processing 792/1136 atomic regions from SNP 237425 to 238025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,619 DEBUG Processing 846/1025 atomic regions from SNP 253570 to 254170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,861 DEBUG Processing 793/1136 atomic regions from SNP 237725 to 238325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,892 DEBUG Processing 847/1025 atomic regions from SNP 253870 to 254470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,970 DEBUG Subchromosome time: 293.28675451129675, subchromosome SNPs: 257750 2025-01-31 09:47:17,971 DEBUG Estimated BADs: [1.42, 0.47, 1.42, 4.25, 1.42, 2.84, 0.71, 0.47, 1.42, 0.28, 1.42, 0.35, 1.42, 0.35, 1.42, 4.25, 1.42, 2.84, 4.25, 1.42, 5.67, 1.42, 2.84] SNP counts: [4909, 22685, 6136, 2297, 8209, 16811, 11986, 8099, 6317, 14671, 9297, 5110, 11718, 16805, 24004, 1011, 10379, 19705, 9135, 8190, 473, 7859, 31944] SNP IDs counts: [4909, 22685, 6136, 2297, 8209, 16811, 11986, 8099, 6317, 14671, 9297, 5110, 11718, 16805, 24004, 1011, 10379, 19705, 9135, 8190, 473, 7859, 31944] Critical gap: 673033bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.88Mbp, 20.88Mbp, 24.31Mbp, 25.54Mbp, 30.27Mbp, 39.38Mbp, 46.35Mbp, 50.99Mbp, 54.39Mbp, 63.41Mbp, 68.47Mbp, 71.59Mbp, 77.95Mbp, 88.03Mbp, 103.55Mbp, 104.09Mbp, 110.09Mbp, 120.43Mbp, 125.31Mbp, 129.72Mbp, 130.02Mbp, 134.23Mbp, 151.83Mbp] 2025-01-31 09:47:17,971 DEBUG chr5 time: 293.2872735634446 s 2025-01-31 09:47:18,135 DEBUG chr5: Fitting background model for 23 segments 2025-01-31 09:47:18,145 DEBUG Processing 794/1136 atomic regions from SNP 238025 to 238625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,165 DEBUG Processing 848/1025 atomic regions from SNP 254170 to 254770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,431 DEBUG Processing 795/1136 atomic regions from SNP 238325 to 238925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,435 DEBUG Processing 849/1025 atomic regions from SNP 254470 to 255070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,704 DEBUG Processing 850/1025 atomic regions from SNP 254770 to 255370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,716 DEBUG Processing 796/1136 atomic regions from SNP 238625 to 239225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,981 DEBUG Processing 851/1025 atomic regions from SNP 255070 to 255670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,006 DEBUG Processing 797/1136 atomic regions from SNP 238925 to 239525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,259 DEBUG Processing 852/1025 atomic regions from SNP 255370 to 255970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,302 DEBUG Processing 798/1136 atomic regions from SNP 239225 to 239825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,539 DEBUG Processing 853/1025 atomic regions from SNP 255670 to 256270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,598 DEBUG Processing 799/1136 atomic regions from SNP 239525 to 240125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,814 DEBUG Processing 854/1025 atomic regions from SNP 255970 to 256570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,884 DEBUG Processing 800/1136 atomic regions from SNP 239825 to 240425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,092 DEBUG Processing 855/1025 atomic regions from SNP 256270 to 256870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,171 DEBUG Processing 801/1136 atomic regions from SNP 240125 to 240725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,368 DEBUG Processing 856/1025 atomic regions from SNP 256570 to 257170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,462 DEBUG Processing 802/1136 atomic regions from SNP 240425 to 241025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,646 DEBUG Processing 857/1025 atomic regions from SNP 256870 to 257470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,753 DEBUG Processing 803/1136 atomic regions from SNP 240725 to 241325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,923 DEBUG Processing 858/1025 atomic regions from SNP 257170 to 257770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,036 DEBUG Processing 804/1136 atomic regions from SNP 241025 to 241625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,199 DEBUG Processing 859/1025 atomic regions from SNP 257470 to 258070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,317 DEBUG Processing 805/1136 atomic regions from SNP 241325 to 241925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,473 DEBUG Processing 860/1025 atomic regions from SNP 257770 to 258370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,600 DEBUG Processing 806/1136 atomic regions from SNP 241625 to 242225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,735 DEBUG Processing 861/1025 atomic regions from SNP 258070 to 258670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,891 DEBUG Processing 807/1136 atomic regions from SNP 241925 to 242525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,996 DEBUG Processing 862/1025 atomic regions from SNP 258370 to 258970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,183 DEBUG Processing 808/1136 atomic regions from SNP 242225 to 242825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,267 DEBUG Processing 863/1025 atomic regions from SNP 258670 to 259270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,475 DEBUG Processing 809/1136 atomic regions from SNP 242525 to 243125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,548 DEBUG Processing 864/1025 atomic regions from SNP 258970 to 259570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,768 DEBUG Processing 810/1136 atomic regions from SNP 242825 to 243425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,825 DEBUG Processing 865/1025 atomic regions from SNP 259270 to 259870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,062 DEBUG Processing 811/1136 atomic regions from SNP 243125 to 243725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,100 DEBUG Processing 866/1025 atomic regions from SNP 259570 to 260170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,353 DEBUG Processing 812/1136 atomic regions from SNP 243425 to 244025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,380 DEBUG Processing 867/1025 atomic regions from SNP 259870 to 260470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,643 DEBUG Processing 813/1136 atomic regions from SNP 243725 to 244325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,662 DEBUG Processing 868/1025 atomic regions from SNP 260170 to 260770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,939 DEBUG Processing 814/1136 atomic regions from SNP 244025 to 244625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,946 DEBUG Processing 869/1025 atomic regions from SNP 260470 to 261070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,227 DEBUG Processing 870/1025 atomic regions from SNP 260770 to 261370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,234 DEBUG Processing 815/1136 atomic regions from SNP 244325 to 244925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,504 DEBUG Processing 871/1025 atomic regions from SNP 261070 to 261670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,522 DEBUG Processing 816/1136 atomic regions from SNP 244625 to 245225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,779 DEBUG Processing 872/1025 atomic regions from SNP 261370 to 261970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,811 DEBUG Processing 817/1136 atomic regions from SNP 244925 to 245525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,056 DEBUG Processing 873/1025 atomic regions from SNP 261670 to 262270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,102 DEBUG Processing 818/1136 atomic regions from SNP 245225 to 245825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,334 DEBUG Processing 874/1025 atomic regions from SNP 261970 to 262570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,392 DEBUG Processing 819/1136 atomic regions from SNP 245525 to 246125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,613 DEBUG Processing 875/1025 atomic regions from SNP 262270 to 262870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,684 DEBUG Processing 820/1136 atomic regions from SNP 245825 to 246425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,893 DEBUG Processing 876/1025 atomic regions from SNP 262570 to 263170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,915 DEBUG Subchromosome time: 300.62823601812124, subchromosome SNPs: 270131 2025-01-31 09:47:25,916 DEBUG Estimated BADs: [0.53, 1.59, 0.79, 3.18, 0.79, 1.59, 0.79, 6.36, 1.59, 0.53, 1.59, 3.18, 9.53, 1.59, 7.95, 3.18, 4.77, 0.79, 4.77, 1.59, 4.77, 1.59, 3.18, 1.59, 6.36, 1.59, 0.20, 0.79, 0.26, 0.79, 0.20] SNP counts: [9117, 2724, 14444, 1603, 14743, 12833, 23342, 2123, 33593, 14252, 8305, 6710, 4934, 5854, 4355, 6302, 15594, 11404, 1826, 8036, 2145, 8993, 7496, 6827, 673, 6588, 3907, 9902, 7197, 11747, 2562] SNP IDs counts: [9117, 2724, 14444, 1603, 14743, 12833, 23342, 2123, 33593, 14252, 8305, 6710, 4934, 5854, 4355, 6302, 15594, 11404, 1826, 8036, 2145, 8993, 7496, 6827, 673, 6588, 3907, 9902, 7197, 11747, 2562] Critical gap: 693742bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.58Mbp, 10.10Mbp, 19.15Mbp, 20.03Mbp, 28.67Mbp, 35.92Mbp, 50.58Mbp, 51.76Mbp, 70.97Mbp, 79.48Mbp, 84.14Mbp, 87.72Mbp, 90.37Mbp, 94.31Mbp, 96.72Mbp, 100.39Mbp, 108.78Mbp, 115.68Mbp, 116.66Mbp, 121.15Mbp, 122.27Mbp, 127.24Mbp, 131.29Mbp, 135.25Mbp, 135.59Mbp, 139.27Mbp, 141.86Mbp, 147.30Mbp, 151.55Mbp, 158.20Mbp, 160.04Mbp] 2025-01-31 09:47:25,916 DEBUG chr3 time: 300.6289013065398 s 2025-01-31 09:47:25,980 DEBUG Processing 821/1136 atomic regions from SNP 246125 to 246725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,100 DEBUG chr3: Fitting background model for 31 segments 2025-01-31 09:47:26,185 DEBUG Processing 877/1025 atomic regions from SNP 262870 to 263470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,275 DEBUG Processing 822/1136 atomic regions from SNP 246425 to 247025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,482 DEBUG Processing 878/1025 atomic regions from SNP 263170 to 263770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,573 DEBUG Processing 823/1136 atomic regions from SNP 246725 to 247325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,769 DEBUG Processing 879/1025 atomic regions from SNP 263470 to 264070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,868 DEBUG Processing 824/1136 atomic regions from SNP 247025 to 247625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,048 DEBUG Processing 880/1025 atomic regions from SNP 263770 to 264370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,163 DEBUG Processing 825/1136 atomic regions from SNP 247325 to 247925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,328 DEBUG Processing 881/1025 atomic regions from SNP 264070 to 264670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,457 DEBUG Processing 826/1136 atomic regions from SNP 247625 to 248225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,610 DEBUG Processing 882/1025 atomic regions from SNP 264370 to 264970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,744 DEBUG Processing 827/1136 atomic regions from SNP 247925 to 248525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,902 DEBUG Processing 883/1025 atomic regions from SNP 264670 to 265270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,036 DEBUG Processing 828/1136 atomic regions from SNP 248225 to 248825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,184 DEBUG Processing 884/1025 atomic regions from SNP 264970 to 265570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,325 DEBUG Processing 829/1136 atomic regions from SNP 248525 to 249125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,496 DEBUG Processing 885/1025 atomic regions from SNP 265270 to 265870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,611 DEBUG Processing 830/1136 atomic regions from SNP 248825 to 249425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,788 DEBUG Processing 886/1025 atomic regions from SNP 265570 to 266170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,896 DEBUG Processing 831/1136 atomic regions from SNP 249125 to 249725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,086 DEBUG Processing 887/1025 atomic regions from SNP 265870 to 266470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,190 DEBUG Processing 832/1136 atomic regions from SNP 249425 to 250025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,382 DEBUG Processing 888/1025 atomic regions from SNP 266170 to 266770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,483 DEBUG Processing 833/1136 atomic regions from SNP 249725 to 250325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,666 DEBUG Processing 889/1025 atomic regions from SNP 266470 to 267070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,770 DEBUG Processing 834/1136 atomic regions from SNP 250025 to 250625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,954 DEBUG Processing 890/1025 atomic regions from SNP 266770 to 267370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,058 DEBUG Processing 835/1136 atomic regions from SNP 250325 to 250925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,236 DEBUG Processing 891/1025 atomic regions from SNP 267070 to 267670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,353 DEBUG Processing 836/1136 atomic regions from SNP 250625 to 251225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,537 DEBUG Processing 892/1025 atomic regions from SNP 267370 to 267970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,648 DEBUG Processing 837/1136 atomic regions from SNP 250925 to 251525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,838 DEBUG Processing 893/1025 atomic regions from SNP 267670 to 268270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,934 DEBUG Processing 838/1136 atomic regions from SNP 251225 to 251825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,123 DEBUG Processing 894/1025 atomic regions from SNP 267970 to 268570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,220 DEBUG Processing 839/1136 atomic regions from SNP 251525 to 252125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,400 DEBUG Processing 895/1025 atomic regions from SNP 268270 to 268870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,508 DEBUG Processing 840/1136 atomic regions from SNP 251825 to 252425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,674 DEBUG Processing 896/1025 atomic regions from SNP 268570 to 269170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,797 DEBUG Processing 841/1136 atomic regions from SNP 252125 to 252725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,954 DEBUG Processing 897/1025 atomic regions from SNP 268870 to 269470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,086 DEBUG Processing 842/1136 atomic regions from SNP 252425 to 253025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,240 DEBUG Processing 898/1025 atomic regions from SNP 269170 to 269770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,371 DEBUG Processing 843/1136 atomic regions from SNP 252725 to 253325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,538 DEBUG Processing 899/1025 atomic regions from SNP 269470 to 270070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,655 DEBUG Processing 844/1136 atomic regions from SNP 253025 to 253625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,822 DEBUG Processing 900/1025 atomic regions from SNP 269770 to 270370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,937 DEBUG Processing 845/1136 atomic regions from SNP 253325 to 253925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,094 DEBUG Processing 901/1025 atomic regions from SNP 270070 to 270670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,236 DEBUG Processing 846/1136 atomic regions from SNP 253625 to 254225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,390 DEBUG Processing 902/1025 atomic regions from SNP 270370 to 270970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,530 DEBUG Processing 847/1136 atomic regions from SNP 253925 to 254525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,660 DEBUG Processing 903/1025 atomic regions from SNP 270670 to 271270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,826 DEBUG Processing 848/1136 atomic regions from SNP 254225 to 254825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,933 DEBUG Processing 904/1025 atomic regions from SNP 270970 to 271570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,117 DEBUG Processing 849/1136 atomic regions from SNP 254525 to 255125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,237 DEBUG Processing 905/1025 atomic regions from SNP 271270 to 271870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,406 DEBUG Processing 850/1136 atomic regions from SNP 254825 to 255425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,540 DEBUG Processing 906/1025 atomic regions from SNP 271570 to 272170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,701 DEBUG Processing 851/1136 atomic regions from SNP 255125 to 255725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,845 DEBUG Processing 907/1025 atomic regions from SNP 271870 to 272470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,001 DEBUG Processing 852/1136 atomic regions from SNP 255425 to 256025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,157 DEBUG Processing 908/1025 atomic regions from SNP 272170 to 272770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,297 DEBUG Processing 853/1136 atomic regions from SNP 255725 to 256325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,476 DEBUG Processing 909/1025 atomic regions from SNP 272470 to 273070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,589 DEBUG Processing 854/1136 atomic regions from SNP 256025 to 256625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,774 DEBUG Processing 910/1025 atomic regions from SNP 272770 to 273370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,891 DEBUG Processing 855/1136 atomic regions from SNP 256325 to 256925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,085 DEBUG Processing 911/1025 atomic regions from SNP 273070 to 273670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,194 DEBUG Processing 856/1136 atomic regions from SNP 256625 to 257225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,397 DEBUG Processing 912/1025 atomic regions from SNP 273370 to 273970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,499 DEBUG Processing 857/1136 atomic regions from SNP 256925 to 257525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,714 DEBUG Processing 913/1025 atomic regions from SNP 273670 to 274270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,800 DEBUG Processing 858/1136 atomic regions from SNP 257225 to 257825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,025 DEBUG Processing 914/1025 atomic regions from SNP 273970 to 274570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,103 DEBUG Processing 859/1136 atomic regions from SNP 257525 to 258125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,326 DEBUG Processing 915/1025 atomic regions from SNP 274270 to 274870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,409 DEBUG Processing 860/1136 atomic regions from SNP 257825 to 258425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,624 DEBUG Processing 916/1025 atomic regions from SNP 274570 to 275170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,717 DEBUG Processing 861/1136 atomic regions from SNP 258125 to 258725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,941 DEBUG Processing 917/1025 atomic regions from SNP 274870 to 275470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,025 DEBUG Processing 862/1136 atomic regions from SNP 258425 to 259025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,244 DEBUG Processing 918/1025 atomic regions from SNP 275170 to 275770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,322 DEBUG Processing 863/1136 atomic regions from SNP 258725 to 259325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,542 DEBUG Processing 919/1025 atomic regions from SNP 275470 to 276070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,621 DEBUG Processing 864/1136 atomic regions from SNP 259025 to 259625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,836 DEBUG Processing 920/1025 atomic regions from SNP 275770 to 276370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,927 DEBUG Processing 865/1136 atomic regions from SNP 259325 to 259925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,138 DEBUG Processing 921/1025 atomic regions from SNP 276070 to 276670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,231 DEBUG Processing 866/1136 atomic regions from SNP 259625 to 260225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,441 DEBUG Processing 922/1025 atomic regions from SNP 276370 to 276970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,544 DEBUG Processing 867/1136 atomic regions from SNP 259925 to 260525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,722 DEBUG Processing 923/1025 atomic regions from SNP 276670 to 277270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,863 DEBUG Processing 868/1136 atomic regions from SNP 260225 to 260825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,014 DEBUG Processing 924/1025 atomic regions from SNP 276970 to 277570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,171 DEBUG Processing 869/1136 atomic regions from SNP 260525 to 261125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,298 DEBUG Processing 925/1025 atomic regions from SNP 277270 to 277870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,472 DEBUG Processing 870/1136 atomic regions from SNP 260825 to 261425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,573 DEBUG Processing 926/1025 atomic regions from SNP 277570 to 278170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,795 DEBUG Processing 871/1136 atomic regions from SNP 261125 to 261725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,854 DEBUG Processing 927/1025 atomic regions from SNP 277870 to 278470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,105 DEBUG Processing 872/1136 atomic regions from SNP 261425 to 262025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,139 DEBUG Processing 928/1025 atomic regions from SNP 278170 to 278770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,411 DEBUG Processing 873/1136 atomic regions from SNP 261725 to 262325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,429 DEBUG Processing 929/1025 atomic regions from SNP 278470 to 279070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,715 DEBUG Processing 874/1136 atomic regions from SNP 262025 to 262625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,720 DEBUG Processing 930/1025 atomic regions from SNP 278770 to 279370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,011 DEBUG Processing 931/1025 atomic regions from SNP 279070 to 279670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,023 DEBUG Processing 875/1136 atomic regions from SNP 262325 to 262925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,303 DEBUG Processing 932/1025 atomic regions from SNP 279370 to 279970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,331 DEBUG Processing 876/1136 atomic regions from SNP 262625 to 263225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,585 DEBUG Processing 933/1025 atomic regions from SNP 279670 to 280270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,641 DEBUG Processing 877/1136 atomic regions from SNP 262925 to 263525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,862 DEBUG Processing 934/1025 atomic regions from SNP 279970 to 280570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,957 DEBUG Processing 878/1136 atomic regions from SNP 263225 to 263825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,128 DEBUG Processing 935/1025 atomic regions from SNP 280270 to 280870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,263 DEBUG Processing 879/1136 atomic regions from SNP 263525 to 264125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,396 DEBUG Processing 936/1025 atomic regions from SNP 280570 to 281170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,565 DEBUG Processing 880/1136 atomic regions from SNP 263825 to 264425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,676 DEBUG Processing 937/1025 atomic regions from SNP 280870 to 281470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,881 DEBUG Processing 881/1136 atomic regions from SNP 264125 to 264725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,963 DEBUG Processing 938/1025 atomic regions from SNP 281170 to 281770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,050 DEBUG Segmenting atomic regions: 2025-01-31 09:47:44,166 DEBUG Processing 1/857 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,202 DEBUG Processing 882/1136 atomic regions from SNP 264425 to 265025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,256 DEBUG Processing 939/1025 atomic regions from SNP 281470 to 282070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,413 DEBUG Processing 2/857 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,504 DEBUG Processing 883/1136 atomic regions from SNP 264725 to 265325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,545 DEBUG Processing 940/1025 atomic regions from SNP 281770 to 282370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,668 DEBUG Processing 3/857 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,816 DEBUG Processing 884/1136 atomic regions from SNP 265025 to 265625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,833 DEBUG Processing 941/1025 atomic regions from SNP 282070 to 282670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,924 DEBUG Processing 4/857 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,117 DEBUG Processing 942/1025 atomic regions from SNP 282370 to 282970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,130 DEBUG Processing 885/1136 atomic regions from SNP 265325 to 265925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,174 DEBUG Processing 5/857 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,404 DEBUG Processing 943/1025 atomic regions from SNP 282670 to 283270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,424 DEBUG Processing 6/857 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,433 DEBUG Processing 886/1136 atomic regions from SNP 265625 to 266225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,680 DEBUG Processing 7/857 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,694 DEBUG Processing 944/1025 atomic regions from SNP 282970 to 283570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,736 DEBUG Processing 887/1136 atomic regions from SNP 265925 to 266525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,942 DEBUG Processing 8/857 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,988 DEBUG Processing 945/1025 atomic regions from SNP 283270 to 283870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,043 DEBUG Processing 888/1136 atomic regions from SNP 266225 to 266825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,207 DEBUG Processing 9/857 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,286 DEBUG Processing 946/1025 atomic regions from SNP 283570 to 284170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,344 DEBUG Processing 889/1136 atomic regions from SNP 266525 to 267125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,470 DEBUG Processing 10/857 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,575 DEBUG Processing 947/1025 atomic regions from SNP 283870 to 284470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,644 DEBUG Processing 890/1136 atomic regions from SNP 266825 to 267425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,723 DEBUG Processing 11/857 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,857 DEBUG Processing 948/1025 atomic regions from SNP 284170 to 284770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,963 DEBUG Processing 891/1136 atomic regions from SNP 267125 to 267725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,981 DEBUG Processing 12/857 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,140 DEBUG Processing 949/1025 atomic regions from SNP 284470 to 285070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,245 DEBUG Processing 13/857 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,304 DEBUG Processing 892/1136 atomic regions from SNP 267425 to 268025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,429 DEBUG Processing 950/1025 atomic regions from SNP 284770 to 285370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,509 DEBUG Processing 14/857 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,630 DEBUG Processing 893/1136 atomic regions from SNP 267725 to 268325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,733 DEBUG Processing 951/1025 atomic regions from SNP 285070 to 285670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,761 DEBUG Processing 15/857 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,931 DEBUG Processing 894/1136 atomic regions from SNP 268025 to 268625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,020 DEBUG Processing 16/857 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,030 DEBUG Processing 952/1025 atomic regions from SNP 285370 to 285970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,246 DEBUG Processing 895/1136 atomic regions from SNP 268325 to 268925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,276 DEBUG Processing 17/857 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,335 DEBUG Processing 953/1025 atomic regions from SNP 285670 to 286270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,522 DEBUG Processing 18/857 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,552 DEBUG Processing 896/1136 atomic regions from SNP 268625 to 269225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,643 DEBUG Processing 954/1025 atomic regions from SNP 285970 to 286570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,764 DEBUG Processing 19/857 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,865 DEBUG Processing 897/1136 atomic regions from SNP 268925 to 269525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,946 DEBUG Processing 955/1025 atomic regions from SNP 286270 to 286870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,996 DEBUG Processing 20/857 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,188 DEBUG Processing 898/1136 atomic regions from SNP 269225 to 269825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,233 DEBUG Processing 21/857 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,242 DEBUG Processing 956/1025 atomic regions from SNP 286570 to 287170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,471 DEBUG Processing 22/857 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,498 DEBUG Processing 899/1136 atomic regions from SNP 269525 to 270125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,525 DEBUG Processing 957/1025 atomic regions from SNP 286870 to 287470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,711 DEBUG Processing 23/857 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,801 DEBUG Processing 900/1136 atomic regions from SNP 269825 to 270425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,805 DEBUG Processing 958/1025 atomic regions from SNP 287170 to 287770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,955 DEBUG Processing 24/857 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,081 DEBUG Processing 959/1025 atomic regions from SNP 287470 to 288070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,111 DEBUG Processing 901/1136 atomic regions from SNP 270125 to 270725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,200 DEBUG Processing 25/857 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,365 DEBUG Processing 960/1025 atomic regions from SNP 287770 to 288370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,429 DEBUG Processing 902/1136 atomic regions from SNP 270425 to 271025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,445 DEBUG Processing 26/857 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,653 DEBUG Processing 961/1025 atomic regions from SNP 288070 to 288670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,695 DEBUG Processing 27/857 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,744 DEBUG Processing 903/1136 atomic regions from SNP 270725 to 271325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,950 DEBUG Processing 28/857 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,957 DEBUG Processing 962/1025 atomic regions from SNP 288370 to 288970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,056 DEBUG Processing 904/1136 atomic regions from SNP 271025 to 271625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,195 DEBUG Processing 29/857 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,266 DEBUG Processing 963/1025 atomic regions from SNP 288670 to 289270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,350 DEBUG Processing 905/1136 atomic regions from SNP 271325 to 271925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,444 DEBUG Processing 30/857 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,569 DEBUG Processing 964/1025 atomic regions from SNP 288970 to 289570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,649 DEBUG Processing 906/1136 atomic regions from SNP 271625 to 272225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,699 DEBUG Processing 31/857 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,752 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:47:51,868 DEBUG Processing 965/1025 atomic regions from SNP 289270 to 289870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,962 DEBUG Processing 32/857 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,963 DEBUG Processing 907/1136 atomic regions from SNP 271925 to 272525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,167 DEBUG Processing 966/1025 atomic regions from SNP 289570 to 290170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,225 DEBUG Processing 33/857 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,275 DEBUG Processing 908/1136 atomic regions from SNP 272225 to 272825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,461 DEBUG Processing 967/1025 atomic regions from SNP 289870 to 290470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,486 DEBUG Processing 34/857 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,601 DEBUG Processing 909/1136 atomic regions from SNP 272525 to 273125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,731 DEBUG Processing 35/857 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,740 DEBUG Processing 968/1025 atomic regions from SNP 290170 to 290770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,903 DEBUG Processing 910/1136 atomic regions from SNP 272825 to 273425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,974 DEBUG Processing 36/857 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,045 DEBUG Processing 969/1025 atomic regions from SNP 290470 to 291070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,191 DEBUG Processing 911/1136 atomic regions from SNP 273125 to 273725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,229 DEBUG Processing 37/857 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,363 DEBUG Processing 970/1025 atomic regions from SNP 290770 to 291370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,481 DEBUG Processing 38/857 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,481 DEBUG Processing 912/1136 atomic regions from SNP 273425 to 274025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,654 DEBUG Processing 971/1025 atomic regions from SNP 291070 to 291670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,737 DEBUG Processing 39/857 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,786 DEBUG Processing 913/1136 atomic regions from SNP 273725 to 274325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,933 DEBUG Processing 972/1025 atomic regions from SNP 291370 to 291970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,985 DEBUG Processing 40/857 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,091 DEBUG Processing 914/1136 atomic regions from SNP 274025 to 274625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,212 DEBUG Processing 973/1025 atomic regions from SNP 291670 to 292270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,231 DEBUG Processing 41/857 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,390 DEBUG Processing 915/1136 atomic regions from SNP 274325 to 274925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,481 DEBUG Processing 42/857 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,520 DEBUG Processing 974/1025 atomic regions from SNP 291970 to 292570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,674 DEBUG Processing 916/1136 atomic regions from SNP 274625 to 275225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,738 DEBUG Processing 43/857 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,830 DEBUG Processing 975/1025 atomic regions from SNP 292270 to 292870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,959 DEBUG Processing 917/1136 atomic regions from SNP 274925 to 275525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,993 DEBUG Processing 44/857 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,129 DEBUG Processing 976/1025 atomic regions from SNP 292570 to 293170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,245 DEBUG Processing 45/857 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,250 DEBUG Processing 918/1136 atomic regions from SNP 275225 to 275825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,433 DEBUG Processing 977/1025 atomic regions from SNP 292870 to 293470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,494 DEBUG Processing 46/857 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,552 DEBUG Processing 919/1136 atomic regions from SNP 275525 to 276125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,734 DEBUG Processing 978/1025 atomic regions from SNP 293170 to 293770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,744 DEBUG Processing 47/857 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,840 DEBUG Processing 920/1136 atomic regions from SNP 275825 to 276425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,996 DEBUG Processing 48/857 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,041 DEBUG Processing 979/1025 atomic regions from SNP 293470 to 294070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,122 DEBUG Processing 921/1136 atomic regions from SNP 276125 to 276725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,242 DEBUG Processing 49/857 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,352 DEBUG Processing 980/1025 atomic regions from SNP 293770 to 294370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,402 DEBUG Processing 922/1136 atomic regions from SNP 276425 to 277025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,489 DEBUG Processing 50/857 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,550 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:47:56,659 DEBUG Processing 981/1025 atomic regions from SNP 294070 to 294670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,712 DEBUG Processing 923/1136 atomic regions from SNP 276725 to 277325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,735 DEBUG Processing 51/857 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,968 DEBUG Processing 982/1025 atomic regions from SNP 294370 to 294970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,982 DEBUG Processing 52/857 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,033 DEBUG Processing 924/1136 atomic regions from SNP 277025 to 277625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,244 DEBUG Processing 53/857 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,298 DEBUG Processing 983/1025 atomic regions from SNP 294670 to 295270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,352 DEBUG Processing 925/1136 atomic regions from SNP 277325 to 277925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,529 DEBUG Processing 54/857 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,661 DEBUG Processing 984/1025 atomic regions from SNP 294970 to 295570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,713 DEBUG Processing 926/1136 atomic regions from SNP 277625 to 278225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,830 DEBUG Processing 55/857 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,040 DEBUG Processing 985/1025 atomic regions from SNP 295270 to 295870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,114 DEBUG Processing 927/1136 atomic regions from SNP 277925 to 278525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,192 DEBUG Processing 56/857 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,445 DEBUG Processing 986/1025 atomic regions from SNP 295570 to 296170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,525 DEBUG Processing 928/1136 atomic regions from SNP 278225 to 278825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,562 DEBUG Processing 57/857 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,732 DEBUG Processing 987/1025 atomic regions from SNP 295870 to 296470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,807 DEBUG Processing 58/857 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,840 DEBUG Processing 929/1136 atomic regions from SNP 278525 to 279125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,011 DEBUG Processing 988/1025 atomic regions from SNP 296170 to 296770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,049 DEBUG Processing 59/857 atomic regions from SNP 17458 to 18058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,156 DEBUG Processing 930/1136 atomic regions from SNP 278825 to 279425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,290 DEBUG Processing 989/1025 atomic regions from SNP 296470 to 297070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,307 DEBUG Processing 60/857 atomic regions from SNP 17758 to 18358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,486 DEBUG Processing 931/1136 atomic regions from SNP 279125 to 279725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,602 DEBUG Processing 61/857 atomic regions from SNP 18058 to 18658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,624 DEBUG Processing 990/1025 atomic regions from SNP 296770 to 297370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,781 DEBUG Processing 932/1136 atomic regions from SNP 279425 to 280025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,918 DEBUG Processing 62/857 atomic regions from SNP 18358 to 18958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,009 DEBUG Processing 991/1025 atomic regions from SNP 297070 to 297670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,141 DEBUG Processing 933/1136 atomic regions from SNP 279725 to 280325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,236 DEBUG Processing 63/857 atomic regions from SNP 18658 to 19258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,399 DEBUG Processing 992/1025 atomic regions from SNP 297370 to 297970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,543 DEBUG Processing 934/1136 atomic regions from SNP 280025 to 280625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,595 DEBUG Processing 64/857 atomic regions from SNP 18958 to 19558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,799 DEBUG Processing 993/1025 atomic regions from SNP 297670 to 298270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,962 DEBUG Processing 935/1136 atomic regions from SNP 280325 to 280925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,981 DEBUG Processing 65/857 atomic regions from SNP 19258 to 19858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,214 DEBUG Processing 994/1025 atomic regions from SNP 297970 to 298570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,379 DEBUG Processing 66/857 atomic regions from SNP 19558 to 20158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,408 DEBUG Processing 936/1136 atomic regions from SNP 280625 to 281225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,552 DEBUG Processing 995/1025 atomic regions from SNP 298270 to 298870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,619 DEBUG Processing 67/857 atomic regions from SNP 19858 to 20458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,700 DEBUG Processing 937/1136 atomic regions from SNP 280925 to 281525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,850 DEBUG Processing 68/857 atomic regions from SNP 20158 to 20758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,851 DEBUG Processing 996/1025 atomic regions from SNP 298570 to 299170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,020 DEBUG Processing 938/1136 atomic regions from SNP 281225 to 281825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,096 DEBUG Processing 69/857 atomic regions from SNP 20458 to 21058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,149 DEBUG Processing 997/1025 atomic regions from SNP 298870 to 299470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,314 DEBUG Processing 939/1136 atomic regions from SNP 281525 to 282125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,339 DEBUG Processing 70/857 atomic regions from SNP 20758 to 21358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,424 DEBUG Processing 998/1025 atomic regions from SNP 299170 to 299770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,577 DEBUG Processing 71/857 atomic regions from SNP 21058 to 21658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,596 DEBUG Processing 940/1136 atomic regions from SNP 281825 to 282425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,693 DEBUG Processing 999/1025 atomic regions from SNP 299470 to 300070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,811 DEBUG Processing 72/857 atomic regions from SNP 21358 to 21958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,884 DEBUG Processing 941/1136 atomic regions from SNP 282125 to 282725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,976 DEBUG Processing 1000/1025 atomic regions from SNP 299770 to 300370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,057 DEBUG Processing 73/857 atomic regions from SNP 21658 to 22258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,190 DEBUG Processing 942/1136 atomic regions from SNP 282425 to 283025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,259 DEBUG Processing 1001/1025 atomic regions from SNP 300070 to 300670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,296 DEBUG Processing 74/857 atomic regions from SNP 21958 to 22558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,480 DEBUG Processing 943/1136 atomic regions from SNP 282725 to 283325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,533 DEBUG Processing 1002/1025 atomic regions from SNP 300370 to 300970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,536 DEBUG Processing 75/857 atomic regions from SNP 22258 to 22858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,768 DEBUG Processing 944/1136 atomic regions from SNP 283025 to 283625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,785 DEBUG Processing 76/857 atomic regions from SNP 22558 to 23158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,815 DEBUG Processing 1003/1025 atomic regions from SNP 300670 to 301270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,067 DEBUG Processing 77/857 atomic regions from SNP 22858 to 23458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,104 DEBUG Processing 945/1136 atomic regions from SNP 283325 to 283925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,124 DEBUG Processing 1004/1025 atomic regions from SNP 300970 to 301570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,304 DEBUG Processing 78/857 atomic regions from SNP 23158 to 23758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,398 DEBUG Processing 946/1136 atomic regions from SNP 283625 to 284225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,412 DEBUG Processing 1005/1025 atomic regions from SNP 301270 to 301870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,537 DEBUG Processing 79/857 atomic regions from SNP 23458 to 24058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,683 DEBUG Processing 947/1136 atomic regions from SNP 283925 to 284525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,684 DEBUG Processing 1006/1025 atomic regions from SNP 301570 to 302170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,765 DEBUG Processing 80/857 atomic regions from SNP 23758 to 24358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,955 DEBUG Processing 1007/1025 atomic regions from SNP 301870 to 302470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,990 DEBUG Processing 948/1136 atomic regions from SNP 284225 to 284825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,994 DEBUG Processing 81/857 atomic regions from SNP 24058 to 24658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,233 DEBUG Processing 1008/1025 atomic regions from SNP 302170 to 302770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,235 DEBUG Processing 82/857 atomic regions from SNP 24358 to 24958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,298 DEBUG Processing 949/1136 atomic regions from SNP 284525 to 285125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,480 DEBUG Processing 83/857 atomic regions from SNP 24658 to 25258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,514 DEBUG Processing 1009/1025 atomic regions from SNP 302470 to 303070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,578 DEBUG Processing 950/1136 atomic regions from SNP 284825 to 285425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,731 DEBUG Processing 84/857 atomic regions from SNP 24958 to 25558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,811 DEBUG Processing 1010/1025 atomic regions from SNP 302770 to 303370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,856 DEBUG Processing 951/1136 atomic regions from SNP 285125 to 285725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,963 DEBUG Processing 85/857 atomic regions from SNP 25258 to 25858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,098 DEBUG Processing 1011/1025 atomic regions from SNP 303070 to 303670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,142 DEBUG Processing 952/1136 atomic regions from SNP 285425 to 286025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,198 DEBUG Processing 86/857 atomic regions from SNP 25558 to 26158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,373 DEBUG Processing 1012/1025 atomic regions from SNP 303370 to 303970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,440 DEBUG Processing 87/857 atomic regions from SNP 25858 to 26458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,444 DEBUG Processing 953/1136 atomic regions from SNP 285725 to 286325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,647 DEBUG Processing 1013/1025 atomic regions from SNP 303670 to 304270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,681 DEBUG Processing 88/857 atomic regions from SNP 26158 to 26758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,752 DEBUG Processing 954/1136 atomic regions from SNP 286025 to 286625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,921 DEBUG Processing 89/857 atomic regions from SNP 26458 to 27058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,947 DEBUG Processing 1014/1025 atomic regions from SNP 303970 to 304570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,059 DEBUG Processing 955/1136 atomic regions from SNP 286325 to 286925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,160 DEBUG Processing 90/857 atomic regions from SNP 26758 to 27358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,244 DEBUG Processing 1015/1025 atomic regions from SNP 304270 to 304870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,370 DEBUG Processing 956/1136 atomic regions from SNP 286625 to 287225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,399 DEBUG Processing 91/857 atomic regions from SNP 27058 to 27658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,514 DEBUG Processing 1016/1025 atomic regions from SNP 304570 to 305170 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,632 DEBUG Processing 92/857 atomic regions from SNP 27358 to 27958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,686 DEBUG Processing 957/1136 atomic regions from SNP 286925 to 287525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,786 DEBUG Processing 1017/1025 atomic regions from SNP 304870 to 305470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,863 DEBUG Processing 93/857 atomic regions from SNP 27658 to 28258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,996 DEBUG Processing 958/1136 atomic regions from SNP 287225 to 287825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,065 DEBUG Processing 1018/1025 atomic regions from SNP 305170 to 305770 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,099 DEBUG Processing 94/857 atomic regions from SNP 27958 to 28558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,307 DEBUG Processing 959/1136 atomic regions from SNP 287525 to 288125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,340 DEBUG Processing 95/857 atomic regions from SNP 28258 to 28858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,348 DEBUG Processing 1019/1025 atomic regions from SNP 305470 to 306070 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,584 DEBUG Processing 96/857 atomic regions from SNP 28558 to 29158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,626 DEBUG Processing 1020/1025 atomic regions from SNP 305770 to 306370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,631 DEBUG Processing 960/1136 atomic regions from SNP 287825 to 288425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,818 DEBUG Processing 97/857 atomic regions from SNP 28858 to 29458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,903 DEBUG Processing 1021/1025 atomic regions from SNP 306070 to 306670 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,920 DEBUG Processing 961/1136 atomic regions from SNP 288125 to 288725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,051 DEBUG Processing 98/857 atomic regions from SNP 29158 to 29758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,187 DEBUG Processing 1022/1025 atomic regions from SNP 306370 to 306970 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,205 DEBUG Processing 962/1136 atomic regions from SNP 288425 to 289025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,282 DEBUG Processing 99/857 atomic regions from SNP 29458 to 30058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,479 DEBUG Processing 1023/1025 atomic regions from SNP 306670 to 307270 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,491 DEBUG Processing 963/1136 atomic regions from SNP 288725 to 289325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,513 DEBUG Processing 100/857 atomic regions from SNP 29758 to 30358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,754 DEBUG Processing 101/857 atomic regions from SNP 30058 to 30658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,760 DEBUG Processing 1024/1025 atomic regions from SNP 306970 to 307570 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,780 DEBUG Processing 964/1136 atomic regions from SNP 289025 to 289625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,001 DEBUG Processing 102/857 atomic regions from SNP 30358 to 30958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,043 DEBUG Processing 1025/1025 atomic regions from SNP 307270 to 307870 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,072 DEBUG Processing 965/1136 atomic regions from SNP 289325 to 289925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,194 DEBUG Unique SNPs positions in subchromosome 1: 307871 2025-01-31 09:48:10,243 DEBUG Processing 103/857 atomic regions from SNP 30658 to 31258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,389 DEBUG Processing 966/1136 atomic regions from SNP 289625 to 290225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,482 DEBUG Processing 104/857 atomic regions from SNP 30958 to 31558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,751 DEBUG Processing 105/857 atomic regions from SNP 31258 to 31858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,759 DEBUG Processing 967/1136 atomic regions from SNP 289925 to 290525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,096 DEBUG Processing 106/857 atomic regions from SNP 31558 to 32158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,156 DEBUG Processing 968/1136 atomic regions from SNP 290225 to 290825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,463 DEBUG Processing 107/857 atomic regions from SNP 31858 to 32458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,555 DEBUG Processing 969/1136 atomic regions from SNP 290525 to 291125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,771 DEBUG Processing 108/857 atomic regions from SNP 32158 to 32758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,864 DEBUG Processing 970/1136 atomic regions from SNP 290825 to 291425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,141 DEBUG Processing 109/857 atomic regions from SNP 32458 to 33058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,239 DEBUG Processing 971/1136 atomic regions from SNP 291125 to 291725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,499 DEBUG Processing 110/857 atomic regions from SNP 32758 to 33358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,601 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:48:12,603 DEBUG chr7: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.012 2025-01-31 09:48:12,673 DEBUG Processing 972/1136 atomic regions from SNP 291425 to 292025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,748 DEBUG Processing 111/857 atomic regions from SNP 33058 to 33658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,985 DEBUG Processing 112/857 atomic regions from SNP 33358 to 33958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,987 DEBUG Processing 973/1136 atomic regions from SNP 291725 to 292325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,316 DEBUG Processing 113/857 atomic regions from SNP 33658 to 34258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,358 DEBUG Processing 974/1136 atomic regions from SNP 292025 to 292625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,660 DEBUG Processing 114/857 atomic regions from SNP 33958 to 34558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,738 DEBUG Processing 975/1136 atomic regions from SNP 292325 to 292925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,000 DEBUG Processing 115/857 atomic regions from SNP 34258 to 34858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,046 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:48:14,048 DEBUG chr10: Signal quantile: 0.994. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:48:14,059 DEBUG Processing 976/1136 atomic regions from SNP 292625 to 293225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,254 DEBUG Processing 116/857 atomic regions from SNP 34558 to 35158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,363 DEBUG Processing 977/1136 atomic regions from SNP 292925 to 293525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,564 DEBUG Processing 117/857 atomic regions from SNP 34858 to 35458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,665 DEBUG Processing 978/1136 atomic regions from SNP 293225 to 293825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,805 DEBUG Processing 118/857 atomic regions from SNP 35158 to 35758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,956 DEBUG Processing 979/1136 atomic regions from SNP 293525 to 294125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,041 DEBUG Processing 119/857 atomic regions from SNP 35458 to 36058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,273 DEBUG Processing 980/1136 atomic regions from SNP 293825 to 294425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,305 DEBUG Processing 120/857 atomic regions from SNP 35758 to 36358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,626 DEBUG Processing 981/1136 atomic regions from SNP 294125 to 294725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,631 DEBUG Processing 121/857 atomic regions from SNP 36058 to 36658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,905 DEBUG Processing 122/857 atomic regions from SNP 36358 to 36958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,945 DEBUG Processing 982/1136 atomic regions from SNP 294425 to 295025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,158 DEBUG chr7 total SNP count: 233385 2025-01-31 09:48:16,159 DEBUG chr7 length: 145441459 2025-01-31 09:48:16,159 DEBUG ----------------------------------------- 2025-01-31 09:48:16,159 INFO Processing SNPs in chr7 2025-01-31 09:48:16,175 DEBUG Processing 123/857 atomic regions from SNP 36658 to 37258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,290 DEBUG Processing 983/1136 atomic regions from SNP 294725 to 295325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,408 DEBUG Processing 124/857 atomic regions from SNP 36958 to 37558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,533 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 21040), (21040, 21079), (21079, 233385)] 2025-01-31 09:48:16,583 DEBUG Processing 984/1136 atomic regions from SNP 295025 to 295625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,634 DEBUG Processing 125/857 atomic regions from SNP 37258 to 37858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,642 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:16,862 DEBUG Processing 985/1136 atomic regions from SNP 295325 to 295925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,863 DEBUG Processing 126/857 atomic regions from SNP 37558 to 38158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,071 DEBUG chr10 total SNP count: 225154 2025-01-31 09:48:17,071 DEBUG chr10 length: 130694993 2025-01-31 09:48:17,071 DEBUG ----------------------------------------- 2025-01-31 09:48:17,071 INFO Processing SNPs in chr10 2025-01-31 09:48:17,095 DEBUG Processing 127/857 atomic regions from SNP 37858 to 38458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,143 DEBUG Processing 986/1136 atomic regions from SNP 295625 to 296225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,302 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 225154)] 2025-01-31 09:48:17,333 DEBUG Processing 128/857 atomic regions from SNP 38158 to 38758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,435 DEBUG Processing 987/1136 atomic regions from SNP 295925 to 296525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,459 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:17,570 DEBUG Processing 129/857 atomic regions from SNP 38458 to 39058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,737 DEBUG Processing 988/1136 atomic regions from SNP 296225 to 296825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,806 DEBUG Processing 130/857 atomic regions from SNP 38758 to 39358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,041 DEBUG Processing 131/857 atomic regions from SNP 39058 to 39658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,047 DEBUG Processing 989/1136 atomic regions from SNP 296525 to 297125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,282 DEBUG Processing 132/857 atomic regions from SNP 39358 to 39958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,375 DEBUG Processing 990/1136 atomic regions from SNP 296825 to 297425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,530 DEBUG Processing 133/857 atomic regions from SNP 39658 to 40258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,696 DEBUG Processing 991/1136 atomic regions from SNP 297125 to 297725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,766 DEBUG Processing 134/857 atomic regions from SNP 39958 to 40558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,995 DEBUG Processing 135/857 atomic regions from SNP 40258 to 40858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,001 DEBUG Processing 992/1136 atomic regions from SNP 297425 to 298025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,212 DEBUG Segmenting atomic regions: 2025-01-31 09:48:19,228 DEBUG Processing 136/857 atomic regions from SNP 40558 to 41158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,290 DEBUG Processing 993/1136 atomic regions from SNP 297725 to 298325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,317 DEBUG Processing 1/69 atomic regions from SNP 0 to 601 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:19,458 DEBUG Processing 137/857 atomic regions from SNP 40858 to 41458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,554 DEBUG Processing 2/69 atomic regions from SNP 301 to 902 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:19,567 DEBUG Processing 994/1136 atomic regions from SNP 298025 to 298625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,691 DEBUG Processing 138/857 atomic regions from SNP 41158 to 41758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,787 DEBUG Processing 3/69 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:19,852 DEBUG Processing 995/1136 atomic regions from SNP 298325 to 298925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,915 DEBUG Processing 139/857 atomic regions from SNP 41458 to 42058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,043 DEBUG Processing 4/69 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:20,144 DEBUG Processing 140/857 atomic regions from SNP 41758 to 42358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,151 DEBUG Processing 996/1136 atomic regions from SNP 298625 to 299225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,287 DEBUG Processing 5/69 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:20,379 DEBUG Processing 141/857 atomic regions from SNP 42058 to 42658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,459 DEBUG Processing 997/1136 atomic regions from SNP 298925 to 299525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,527 DEBUG Processing 6/69 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:20,610 DEBUG Processing 142/857 atomic regions from SNP 42358 to 42958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,759 DEBUG Processing 998/1136 atomic regions from SNP 299225 to 299825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,761 DEBUG Processing 7/69 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:20,831 DEBUG Processing 143/857 atomic regions from SNP 42658 to 43258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,015 DEBUG Processing 8/69 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:21,043 DEBUG Processing 999/1136 atomic regions from SNP 299525 to 300125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,064 DEBUG Processing 144/857 atomic regions from SNP 42958 to 43558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,274 DEBUG Processing 9/69 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:21,317 DEBUG Processing 145/857 atomic regions from SNP 43258 to 43858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,323 DEBUG Processing 1000/1136 atomic regions from SNP 299825 to 300425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,532 DEBUG Processing 10/69 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:21,548 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:48:21,556 DEBUG Processing 146/857 atomic regions from SNP 43558 to 44158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,605 DEBUG Processing 1001/1136 atomic regions from SNP 300125 to 300725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,800 DEBUG Processing 147/857 atomic regions from SNP 43858 to 44458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,804 DEBUG Processing 11/69 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:21,909 DEBUG Processing 1002/1136 atomic regions from SNP 300425 to 301025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,048 DEBUG Processing 12/69 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:22,053 DEBUG Processing 148/857 atomic regions from SNP 44158 to 44758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,197 DEBUG Processing 1003/1136 atomic regions from SNP 300725 to 301325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,283 DEBUG Processing 13/69 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:22,296 DEBUG Processing 149/857 atomic regions from SNP 44458 to 45058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,468 DEBUG Processing 1004/1136 atomic regions from SNP 301025 to 301625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,514 DEBUG Processing 14/69 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:22,555 DEBUG Processing 150/857 atomic regions from SNP 44758 to 45358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,748 DEBUG Processing 1005/1136 atomic regions from SNP 301325 to 301925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,805 DEBUG Processing 15/69 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:22,853 DEBUG Processing 151/857 atomic regions from SNP 45058 to 45658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,099 DEBUG Processing 1006/1136 atomic regions from SNP 301625 to 302225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,116 DEBUG Processing 16/69 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:23,173 DEBUG Processing 152/857 atomic regions from SNP 45358 to 45958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,373 DEBUG Processing 17/69 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:23,388 DEBUG Processing 1007/1136 atomic regions from SNP 301925 to 302525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,432 DEBUG Processing 153/857 atomic regions from SNP 45658 to 46258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,632 DEBUG Processing 18/69 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:23,670 DEBUG Processing 1008/1136 atomic regions from SNP 302225 to 302825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,680 DEBUG Processing 154/857 atomic regions from SNP 45958 to 46558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,877 DEBUG Processing 19/69 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:23,916 DEBUG Processing 155/857 atomic regions from SNP 46258 to 46858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,949 DEBUG Processing 1009/1136 atomic regions from SNP 302525 to 303125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,149 DEBUG Processing 20/69 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:24,175 DEBUG Processing 156/857 atomic regions from SNP 46558 to 47158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,232 DEBUG Processing 1010/1136 atomic regions from SNP 302825 to 303425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,378 DEBUG Processing 21/69 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:24,440 DEBUG Processing 157/857 atomic regions from SNP 46858 to 47458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,525 DEBUG Processing 1011/1136 atomic regions from SNP 303125 to 303725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,605 DEBUG Processing 22/69 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:24,686 DEBUG Processing 158/857 atomic regions from SNP 47158 to 47758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,811 DEBUG Processing 1012/1136 atomic regions from SNP 303425 to 304025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,842 DEBUG Processing 23/69 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:24,924 DEBUG Processing 159/857 atomic regions from SNP 47458 to 48058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,084 DEBUG Processing 24/69 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:25,092 DEBUG Processing 1013/1136 atomic regions from SNP 303725 to 304325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,160 DEBUG Processing 160/857 atomic regions from SNP 47758 to 48358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,329 DEBUG Processing 25/69 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:25,387 DEBUG Processing 1014/1136 atomic regions from SNP 304025 to 304625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,424 DEBUG Processing 161/857 atomic regions from SNP 48058 to 48658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,573 DEBUG Processing 26/69 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:25,681 DEBUG Processing 1015/1136 atomic regions from SNP 304325 to 304925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,690 DEBUG Processing 162/857 atomic regions from SNP 48358 to 48958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,814 DEBUG Processing 27/69 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:25,945 DEBUG Processing 163/857 atomic regions from SNP 48658 to 49258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,987 DEBUG Processing 1016/1136 atomic regions from SNP 304625 to 305225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,077 DEBUG Processing 28/69 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:26,207 DEBUG Processing 164/857 atomic regions from SNP 48958 to 49558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,294 DEBUG Processing 1017/1136 atomic regions from SNP 304925 to 305525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,309 DEBUG Processing 29/69 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:26,473 DEBUG Processing 165/857 atomic regions from SNP 49258 to 49858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,548 DEBUG Processing 30/69 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:26,586 DEBUG Processing 1018/1136 atomic regions from SNP 305225 to 305825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,717 DEBUG Processing 166/857 atomic regions from SNP 49558 to 50158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,796 DEBUG Processing 31/69 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:26,884 DEBUG Processing 1019/1136 atomic regions from SNP 305525 to 306125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,960 DEBUG Processing 167/857 atomic regions from SNP 49858 to 50458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,046 DEBUG Processing 32/69 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:27,203 DEBUG Processing 1020/1136 atomic regions from SNP 305825 to 306425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,242 DEBUG Processing 168/857 atomic regions from SNP 50158 to 50758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,358 DEBUG Processing 33/69 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:27,549 DEBUG Processing 169/857 atomic regions from SNP 50458 to 51058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,569 DEBUG Processing 1021/1136 atomic regions from SNP 306125 to 306725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,711 DEBUG Processing 34/69 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:27,882 DEBUG Processing 170/857 atomic regions from SNP 50758 to 51358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,931 DEBUG Processing 1022/1136 atomic regions from SNP 306425 to 307025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,059 DEBUG Processing 35/69 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:28,244 DEBUG Processing 171/857 atomic regions from SNP 51058 to 51658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,317 DEBUG Processing 1023/1136 atomic regions from SNP 306725 to 307325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,365 DEBUG Processing 36/69 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:28,622 DEBUG Processing 172/857 atomic regions from SNP 51358 to 51958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,713 DEBUG Processing 37/69 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:28,721 DEBUG Processing 1024/1136 atomic regions from SNP 307025 to 307625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,872 DEBUG Processing 173/857 atomic regions from SNP 51658 to 52258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,975 DEBUG Processing 38/69 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:29,026 DEBUG Processing 1025/1136 atomic regions from SNP 307325 to 307925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,107 DEBUG Processing 174/857 atomic regions from SNP 51958 to 52558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,225 DEBUG Processing 39/69 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:29,316 DEBUG Processing 1026/1136 atomic regions from SNP 307625 to 308225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,349 DEBUG Processing 175/857 atomic regions from SNP 52258 to 52858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,463 DEBUG Processing 40/69 atomic regions from SNP 11739 to 12339 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:29,594 DEBUG Processing 176/857 atomic regions from SNP 52558 to 53158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,604 DEBUG Processing 1027/1136 atomic regions from SNP 307925 to 308525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,705 DEBUG Processing 41/69 atomic regions from SNP 12039 to 12639 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:29,836 DEBUG Processing 177/857 atomic regions from SNP 52858 to 53458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,900 DEBUG Processing 1028/1136 atomic regions from SNP 308225 to 308825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,947 DEBUG Processing 42/69 atomic regions from SNP 12339 to 12939 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,082 DEBUG Processing 178/857 atomic regions from SNP 53158 to 53758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,191 DEBUG Processing 43/69 atomic regions from SNP 12639 to 13239 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,200 DEBUG Processing 1029/1136 atomic regions from SNP 308525 to 309125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,321 DEBUG Processing 179/857 atomic regions from SNP 53458 to 54058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,429 DEBUG Processing 44/69 atomic regions from SNP 12939 to 13539 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,489 DEBUG Processing 1030/1136 atomic regions from SNP 308825 to 309425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,566 DEBUG Processing 180/857 atomic regions from SNP 53758 to 54358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,660 DEBUG Processing 45/69 atomic regions from SNP 13239 to 13839 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,771 DEBUG Processing 1031/1136 atomic regions from SNP 309125 to 309725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,817 DEBUG Processing 181/857 atomic regions from SNP 54058 to 54658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,895 DEBUG Processing 46/69 atomic regions from SNP 13539 to 14139 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,072 DEBUG Processing 182/857 atomic regions from SNP 54358 to 54958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,093 DEBUG Processing 1032/1136 atomic regions from SNP 309425 to 310025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,143 DEBUG Processing 47/69 atomic regions from SNP 13839 to 14439 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,324 DEBUG Processing 183/857 atomic regions from SNP 54658 to 55258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,404 DEBUG Processing 48/69 atomic regions from SNP 14139 to 14739 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,425 DEBUG Processing 1033/1136 atomic regions from SNP 309725 to 310325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,570 DEBUG Processing 184/857 atomic regions from SNP 54958 to 55558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,681 DEBUG Processing 49/69 atomic regions from SNP 14439 to 15039 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,718 DEBUG Processing 1034/1136 atomic regions from SNP 310025 to 310625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,835 DEBUG Processing 185/857 atomic regions from SNP 55258 to 55858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,945 DEBUG Processing 50/69 atomic regions from SNP 14739 to 15339 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,007 DEBUG Processing 1035/1136 atomic regions from SNP 310325 to 310925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,084 DEBUG Processing 186/857 atomic regions from SNP 55558 to 56158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,208 DEBUG Processing 51/69 atomic regions from SNP 15039 to 15639 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,307 DEBUG Processing 1036/1136 atomic regions from SNP 310625 to 311225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,340 DEBUG Processing 187/857 atomic regions from SNP 55858 to 56458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,457 DEBUG Processing 52/69 atomic regions from SNP 15339 to 15939 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,594 DEBUG Processing 188/857 atomic regions from SNP 56158 to 56758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,603 DEBUG Processing 1037/1136 atomic regions from SNP 310925 to 311525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,697 DEBUG Processing 53/69 atomic regions from SNP 15639 to 16239 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,832 DEBUG Processing 189/857 atomic regions from SNP 56458 to 57058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,895 DEBUG Processing 1038/1136 atomic regions from SNP 311225 to 311825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,947 DEBUG Processing 54/69 atomic regions from SNP 15939 to 16539 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,071 DEBUG Processing 190/857 atomic regions from SNP 56758 to 57358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,184 DEBUG Processing 1039/1136 atomic regions from SNP 311525 to 312125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,199 DEBUG Processing 55/69 atomic regions from SNP 16239 to 16839 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,313 DEBUG Processing 191/857 atomic regions from SNP 57058 to 57658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,418 DEBUG Processing 56/69 atomic regions from SNP 16539 to 17139 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,499 DEBUG Processing 1040/1136 atomic regions from SNP 311825 to 312425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,557 DEBUG Processing 192/857 atomic regions from SNP 57358 to 57958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,646 DEBUG Processing 57/69 atomic regions from SNP 16839 to 17439 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,804 DEBUG Processing 193/857 atomic regions from SNP 57658 to 58258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,825 DEBUG Processing 1041/1136 atomic regions from SNP 312125 to 312725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,890 DEBUG Processing 58/69 atomic regions from SNP 17139 to 17739 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,044 DEBUG Processing 194/857 atomic regions from SNP 57958 to 58558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,130 DEBUG Processing 59/69 atomic regions from SNP 17439 to 18039 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,149 DEBUG Processing 1042/1136 atomic regions from SNP 312425 to 313025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,275 DEBUG Processing 195/857 atomic regions from SNP 58258 to 58858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,367 DEBUG Processing 60/69 atomic regions from SNP 17739 to 18339 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,445 DEBUG Processing 1043/1136 atomic regions from SNP 312725 to 313325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,515 DEBUG Processing 196/857 atomic regions from SNP 58558 to 59158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,604 DEBUG Processing 61/69 atomic regions from SNP 18039 to 18639 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,751 DEBUG Processing 1044/1136 atomic regions from SNP 313025 to 313625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,762 DEBUG Processing 197/857 atomic regions from SNP 58858 to 59458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,848 DEBUG Processing 62/69 atomic regions from SNP 18339 to 18939 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,009 DEBUG Processing 198/857 atomic regions from SNP 59158 to 59758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,077 DEBUG Processing 1045/1136 atomic regions from SNP 313325 to 313925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,084 DEBUG Processing 63/69 atomic regions from SNP 18639 to 19239 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,244 DEBUG Processing 199/857 atomic regions from SNP 59458 to 60058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,338 DEBUG Processing 64/69 atomic regions from SNP 18939 to 19539 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,404 DEBUG Processing 1046/1136 atomic regions from SNP 313625 to 314225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,480 DEBUG Processing 200/857 atomic regions from SNP 59758 to 60358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,615 DEBUG Processing 65/69 atomic regions from SNP 19239 to 19839 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,718 DEBUG Processing 201/857 atomic regions from SNP 60058 to 60658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,720 DEBUG Processing 1047/1136 atomic regions from SNP 313925 to 314525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,880 DEBUG Processing 66/69 atomic regions from SNP 19539 to 20139 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,960 DEBUG Processing 202/857 atomic regions from SNP 60358 to 60958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,045 DEBUG Processing 1048/1136 atomic regions from SNP 314225 to 314825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,149 DEBUG Processing 67/69 atomic regions from SNP 19839 to 20439 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,205 DEBUG Processing 203/857 atomic regions from SNP 60658 to 61258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,368 DEBUG Processing 1049/1136 atomic regions from SNP 314525 to 315125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,425 DEBUG Processing 68/69 atomic regions from SNP 20139 to 20739 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,455 DEBUG Processing 204/857 atomic regions from SNP 60958 to 61558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,686 DEBUG Processing 1050/1136 atomic regions from SNP 314825 to 315425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,692 DEBUG Processing 69/69 atomic regions from SNP 20439 to 21039 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,713 DEBUG Processing 205/857 atomic regions from SNP 61258 to 61858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,826 DEBUG Unique SNPs positions in subchromosome 1: 21040 2025-01-31 09:48:36,877 DEBUG Subchromosome time: 20.235383428633213, subchromosome SNPs: 21040 2025-01-31 09:48:36,932 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:36,997 DEBUG Processing 206/857 atomic regions from SNP 61558 to 62158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,028 DEBUG Processing 1051/1136 atomic regions from SNP 315125 to 315725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,297 DEBUG Processing 207/857 atomic regions from SNP 61858 to 62458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,347 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:48:37,349 DEBUG chr8: Signal quantile: 0.993. signal threshold: 14. Best RMSEA: 0.015 2025-01-31 09:48:37,408 DEBUG Processing 1052/1136 atomic regions from SNP 315425 to 316025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,536 DEBUG Processing 208/857 atomic regions from SNP 62158 to 62758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,716 DEBUG Processing 1053/1136 atomic regions from SNP 315725 to 316325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,798 DEBUG Processing 209/857 atomic regions from SNP 62458 to 63058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,022 DEBUG Processing 1054/1136 atomic regions from SNP 316025 to 316625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,067 DEBUG Processing 210/857 atomic regions from SNP 62758 to 63358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,347 DEBUG Processing 1055/1136 atomic regions from SNP 316325 to 316925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,359 DEBUG Processing 211/857 atomic regions from SNP 63058 to 63658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,713 DEBUG Processing 212/857 atomic regions from SNP 63358 to 63958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,749 DEBUG Processing 1056/1136 atomic regions from SNP 316625 to 317225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,755 DEBUG Subchromosome time: 370.6755642518401, subchromosome SNPs: 307871 2025-01-31 09:48:38,758 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:39,090 DEBUG Processing 213/857 atomic regions from SNP 63658 to 64258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,161 DEBUG Processing 1057/1136 atomic regions from SNP 316925 to 317525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,343 DEBUG Processing 214/857 atomic regions from SNP 63958 to 64558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,470 DEBUG Processing 1058/1136 atomic regions from SNP 317225 to 317825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,616 DEBUG Processing 215/857 atomic regions from SNP 64258 to 64858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,702 DEBUG Segmenting atomic regions: 2025-01-31 09:48:39,787 DEBUG Processing 1059/1136 atomic regions from SNP 317525 to 318125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,840 DEBUG Processing 1/25 atomic regions from SNP 0 to 604 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:39,900 DEBUG Processing 216/857 atomic regions from SNP 64558 to 65158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,163 DEBUG Processing 1060/1136 atomic regions from SNP 317825 to 318425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,204 DEBUG Processing 2/25 atomic regions from SNP 304 to 907 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:40,222 DEBUG Processing 217/857 atomic regions from SNP 64858 to 65458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,521 DEBUG chr8 total SNP count: 220754 2025-01-31 09:48:40,521 DEBUG chr8 length: 129401213 2025-01-31 09:48:40,521 DEBUG ----------------------------------------- 2025-01-31 09:48:40,521 INFO Processing SNPs in chr8 2025-01-31 09:48:40,586 DEBUG Processing 3/25 atomic regions from SNP 607 to 1210 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:40,588 DEBUG Processing 1061/1136 atomic regions from SNP 318125 to 318725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,590 DEBUG Processing 218/857 atomic regions from SNP 65158 to 65758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,753 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 220754)] 2025-01-31 09:48:40,847 DEBUG Processing 219/857 atomic regions from SNP 65458 to 66058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,876 DEBUG Processing 4/25 atomic regions from SNP 910 to 1513 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:40,893 DEBUG Processing 1062/1136 atomic regions from SNP 318425 to 319025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,909 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:41,091 DEBUG Processing 220/857 atomic regions from SNP 65758 to 66358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,157 DEBUG Processing 5/25 atomic regions from SNP 1213 to 1816 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:41,199 DEBUG Processing 1063/1136 atomic regions from SNP 318725 to 319325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,331 DEBUG Processing 221/857 atomic regions from SNP 66058 to 66658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,430 DEBUG Processing 6/25 atomic regions from SNP 1516 to 2119 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:41,518 DEBUG Processing 1064/1136 atomic regions from SNP 319025 to 319625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,567 DEBUG Processing 222/857 atomic regions from SNP 66358 to 66958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,696 DEBUG Processing 7/25 atomic regions from SNP 1819 to 2422 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:41,815 DEBUG Processing 223/857 atomic regions from SNP 66658 to 67258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,817 DEBUG Processing 1065/1136 atomic regions from SNP 319325 to 319925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,967 DEBUG Processing 8/25 atomic regions from SNP 2122 to 2725 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:42,063 DEBUG Processing 224/857 atomic regions from SNP 66958 to 67558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,111 DEBUG Processing 1066/1136 atomic regions from SNP 319625 to 320225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,289 DEBUG Processing 9/25 atomic regions from SNP 2425 to 3028 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:42,330 DEBUG Processing 225/857 atomic regions from SNP 67258 to 67858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,397 DEBUG Processing 1067/1136 atomic regions from SNP 319925 to 320525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,571 DEBUG Processing 10/25 atomic regions from SNP 2728 to 3331 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:42,583 DEBUG Processing 226/857 atomic regions from SNP 67558 to 68158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,693 DEBUG Processing 1068/1136 atomic regions from SNP 320225 to 320825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,827 DEBUG Processing 227/857 atomic regions from SNP 67858 to 68458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,840 DEBUG Processing 11/25 atomic regions from SNP 3031 to 3634 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:42,988 DEBUG Processing 1069/1136 atomic regions from SNP 320525 to 321125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,062 DEBUG Processing 228/857 atomic regions from SNP 68158 to 68758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,112 DEBUG Processing 12/25 atomic regions from SNP 3334 to 3937 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:43,286 DEBUG Processing 1070/1136 atomic regions from SNP 320825 to 321425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,307 DEBUG Processing 229/857 atomic regions from SNP 68458 to 69058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,397 DEBUG Processing 13/25 atomic regions from SNP 3637 to 4240 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:43,550 DEBUG Processing 230/857 atomic regions from SNP 68758 to 69358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,579 DEBUG Processing 1071/1136 atomic regions from SNP 321125 to 321725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,696 DEBUG Processing 14/25 atomic regions from SNP 3940 to 4543 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:43,797 DEBUG Processing 231/857 atomic regions from SNP 69058 to 69658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,890 DEBUG Processing 1072/1136 atomic regions from SNP 321425 to 322025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,008 DEBUG Processing 15/25 atomic regions from SNP 4243 to 4846 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:44,040 DEBUG Processing 232/857 atomic regions from SNP 69358 to 69958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,204 DEBUG Processing 1073/1136 atomic regions from SNP 321725 to 322325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,289 DEBUG Processing 233/857 atomic regions from SNP 69658 to 70258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,317 DEBUG Processing 16/25 atomic regions from SNP 4546 to 5149 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:44,500 DEBUG Processing 1074/1136 atomic regions from SNP 322025 to 322625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,530 DEBUG Processing 234/857 atomic regions from SNP 69958 to 70558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,622 DEBUG Processing 17/25 atomic regions from SNP 4849 to 5452 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:44,774 DEBUG Processing 235/857 atomic regions from SNP 70258 to 70858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,793 DEBUG Segmenting atomic regions: 2025-01-31 09:48:44,809 DEBUG Processing 1075/1136 atomic regions from SNP 322325 to 322925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,896 DEBUG Processing 1/749 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,937 DEBUG Processing 18/25 atomic regions from SNP 5152 to 5755 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:45,022 DEBUG Processing 236/857 atomic regions from SNP 70558 to 71158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,134 DEBUG Processing 2/749 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,137 DEBUG Processing 1076/1136 atomic regions from SNP 322625 to 323225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,257 DEBUG Processing 19/25 atomic regions from SNP 5455 to 6058 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:45,275 DEBUG Processing 237/857 atomic regions from SNP 70858 to 71458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,368 DEBUG Processing 3/749 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,452 DEBUG Processing 1077/1136 atomic regions from SNP 322925 to 323525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,521 DEBUG Processing 238/857 atomic regions from SNP 71158 to 71758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,561 DEBUG Processing 20/25 atomic regions from SNP 5758 to 6361 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:45,609 DEBUG Processing 4/749 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,747 DEBUG Processing 1078/1136 atomic regions from SNP 323225 to 323825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,774 DEBUG Processing 239/857 atomic regions from SNP 71458 to 72058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,853 DEBUG Processing 5/749 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,870 DEBUG Processing 21/25 atomic regions from SNP 6061 to 6664 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:46,028 DEBUG Processing 240/857 atomic regions from SNP 71758 to 72358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,039 DEBUG Processing 1079/1136 atomic regions from SNP 323525 to 324125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,146 DEBUG Processing 6/749 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,205 DEBUG Processing 22/25 atomic regions from SNP 6364 to 6967 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:46,268 DEBUG Processing 241/857 atomic regions from SNP 72058 to 72658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,319 DEBUG Processing 1080/1136 atomic regions from SNP 323825 to 324425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,394 DEBUG Processing 7/749 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,508 DEBUG Processing 23/25 atomic regions from SNP 6667 to 7270 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:46,511 DEBUG Processing 242/857 atomic regions from SNP 72358 to 72958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,604 DEBUG Processing 1081/1136 atomic regions from SNP 324125 to 324725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,647 DEBUG Processing 8/749 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,755 DEBUG Processing 243/857 atomic regions from SNP 72658 to 73258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,817 DEBUG Processing 24/25 atomic regions from SNP 6970 to 7573 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:46,889 DEBUG Processing 1082/1136 atomic regions from SNP 324425 to 325025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,900 DEBUG Processing 9/749 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,993 DEBUG Processing 244/857 atomic regions from SNP 72958 to 73558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,122 DEBUG Processing 25/25 atomic regions from SNP 7273 to 7876 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:47,145 DEBUG Processing 10/749 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,176 DEBUG Processing 1083/1136 atomic regions from SNP 324725 to 325325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,235 DEBUG Processing 245/857 atomic regions from SNP 73258 to 73858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,265 DEBUG Unique SNPs positions in subchromosome 2: 7877 2025-01-31 09:48:47,276 DEBUG Subchromosome time: 8.518068481236696, subchromosome SNPs: 7877 2025-01-31 09:48:47,277 DEBUG Estimated BADs: [1.57, 0.78, 1.57, 4.71, 3.14, 0.52, 1.57, 0.31, 0.78, 1.57, 0.39, 1.57, 4.71, 0.31, 1.57, 3.14, 0.26, 1.57, 0.78, 3.14, 0.39, 1.57, 3.14, 1.57, 0.78, 1.57, 3.14, 1.57, 3.14, 1.57, 3.14, 3.14, 6.28] SNP counts: [8220, 18334, 11917, 15098, 6442, 1349, 4197, 6619, 43183, 24640, 3550, 2371, 1231, 6904, 1829, 7498, 9280, 13197, 18638, 8047, 1228, 6375, 7417, 5412, 27581, 4572, 9541, 11099, 8701, 8096, 5305, 3742, 4135] SNP IDs counts: [8220, 18334, 11917, 15098, 6442, 1349, 4197, 6619, 43183, 24640, 3550, 2371, 1231, 6904, 1829, 7498, 9280, 13197, 18638, 8047, 1228, 6375, 7417, 5412, 27581, 4572, 9541, 11099, 8701, 8096, 5305, 3742, 4135] Critical gap: 725617bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.54Mbp, 18.03Mbp, 24.92Mbp, 32.87Mbp, 36.24Mbp, 37.09Mbp, 39.37Mbp, 43.24Mbp, 67.73Mbp, 81.01Mbp, 83.16Mbp, 84.66Mbp, 85.32Mbp, 89.60Mbp, 90.87Mbp, 94.81Mbp, 100.84Mbp, 108.04Mbp, 118.65Mbp, 122.99Mbp, 123.71Mbp, 127.21Mbp, 131.15Mbp, 134.09Mbp, 149.42Mbp, 152.29Mbp, 157.37Mbp, 163.32Mbp, 167.94Mbp, 172.22Mbp, 175.18Mbp[1.52Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:48:47,277 DEBUG chr2 time: 8.518886812031269 s 2025-01-31 09:48:47,394 DEBUG Processing 11/749 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,471 DEBUG Processing 1084/1136 atomic regions from SNP 325025 to 325625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,494 DEBUG Processing 246/857 atomic regions from SNP 73558 to 74158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,494 DEBUG chr2: Fitting background model for 33 segments 2025-01-31 09:48:47,645 DEBUG Processing 12/749 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,753 DEBUG Processing 247/857 atomic regions from SNP 73858 to 74458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,776 DEBUG Processing 1085/1136 atomic regions from SNP 325325 to 325925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,896 DEBUG Processing 13/749 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,007 DEBUG Processing 248/857 atomic regions from SNP 74158 to 74758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,079 DEBUG Processing 1086/1136 atomic regions from SNP 325625 to 326225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,146 DEBUG Processing 14/749 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,256 DEBUG Processing 249/857 atomic regions from SNP 74458 to 75058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,379 DEBUG Processing 1087/1136 atomic regions from SNP 325925 to 326525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,389 DEBUG Processing 15/749 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,506 DEBUG Processing 250/857 atomic regions from SNP 74758 to 75358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,625 DEBUG Processing 16/749 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,677 DEBUG Processing 1088/1136 atomic regions from SNP 326225 to 326825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,753 DEBUG Processing 251/857 atomic regions from SNP 75058 to 75658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,894 DEBUG Processing 17/749 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,971 DEBUG Processing 1089/1136 atomic regions from SNP 326525 to 327125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,002 DEBUG Processing 252/857 atomic regions from SNP 75358 to 75958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,128 DEBUG Processing 18/749 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,251 DEBUG Processing 253/857 atomic regions from SNP 75658 to 76258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,269 DEBUG Processing 1090/1136 atomic regions from SNP 326825 to 327425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,357 DEBUG Processing 19/749 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,504 DEBUG Processing 254/857 atomic regions from SNP 75958 to 76558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,569 DEBUG Processing 1091/1136 atomic regions from SNP 327125 to 327725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,589 DEBUG Processing 20/749 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,751 DEBUG Processing 255/857 atomic regions from SNP 76258 to 76858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,830 DEBUG Processing 21/749 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,873 DEBUG Processing 1092/1136 atomic regions from SNP 327425 to 328025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,998 DEBUG Processing 256/857 atomic regions from SNP 76558 to 77158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,069 DEBUG Processing 22/749 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,169 DEBUG Processing 1093/1136 atomic regions from SNP 327725 to 328325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,243 DEBUG Processing 257/857 atomic regions from SNP 76858 to 77458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,300 DEBUG Processing 23/749 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,465 DEBUG Processing 1094/1136 atomic regions from SNP 328025 to 328625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,497 DEBUG Processing 258/857 atomic regions from SNP 77158 to 77758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,537 DEBUG Processing 24/749 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,761 DEBUG Processing 259/857 atomic regions from SNP 77458 to 78058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,772 DEBUG Processing 1095/1136 atomic regions from SNP 328325 to 328925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,782 DEBUG Processing 25/749 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,027 DEBUG Processing 26/749 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,048 DEBUG Processing 260/857 atomic regions from SNP 77758 to 78358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,084 DEBUG Processing 1096/1136 atomic regions from SNP 328625 to 329225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,282 DEBUG Processing 27/749 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,326 DEBUG Processing 261/857 atomic regions from SNP 78058 to 78658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,387 DEBUG Processing 1097/1136 atomic regions from SNP 328925 to 329525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,518 DEBUG Processing 28/749 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,585 DEBUG Processing 262/857 atomic regions from SNP 78358 to 78958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,693 DEBUG Processing 1098/1136 atomic regions from SNP 329225 to 329825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,757 DEBUG Processing 29/749 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,835 DEBUG Processing 263/857 atomic regions from SNP 78658 to 79258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,993 DEBUG Processing 1099/1136 atomic regions from SNP 329525 to 330125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,994 DEBUG Processing 30/749 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,078 DEBUG Processing 264/857 atomic regions from SNP 78958 to 79558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,234 DEBUG Processing 31/749 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,294 DEBUG Processing 1100/1136 atomic regions from SNP 329825 to 330425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,329 DEBUG Processing 265/857 atomic regions from SNP 79258 to 79858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,463 DEBUG Processing 32/749 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,584 DEBUG Processing 266/857 atomic regions from SNP 79558 to 80158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,599 DEBUG Processing 1101/1136 atomic regions from SNP 330125 to 330725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,688 DEBUG Processing 33/749 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,840 DEBUG Processing 267/857 atomic regions from SNP 79858 to 80458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,905 DEBUG Processing 1102/1136 atomic regions from SNP 330425 to 331025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,925 DEBUG Processing 34/749 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,114 DEBUG Processing 268/857 atomic regions from SNP 80158 to 80758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,156 DEBUG Processing 35/749 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,219 DEBUG Processing 1103/1136 atomic regions from SNP 330725 to 331325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,391 DEBUG Processing 36/749 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,393 DEBUG Processing 269/857 atomic regions from SNP 80458 to 81058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,546 DEBUG Processing 1104/1136 atomic regions from SNP 331025 to 331625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,627 DEBUG Processing 37/749 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,637 DEBUG Processing 270/857 atomic regions from SNP 80758 to 81358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,862 DEBUG Processing 1105/1136 atomic regions from SNP 331325 to 331925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,863 DEBUG Processing 38/749 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,883 DEBUG Processing 271/857 atomic regions from SNP 81058 to 81658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,102 DEBUG Processing 39/749 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,133 DEBUG Processing 272/857 atomic regions from SNP 81358 to 81958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,163 DEBUG Processing 1106/1136 atomic regions from SNP 331625 to 332225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,337 DEBUG Processing 40/749 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,381 DEBUG Processing 273/857 atomic regions from SNP 81658 to 82258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,463 DEBUG Processing 1107/1136 atomic regions from SNP 331925 to 332525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,565 DEBUG Processing 41/749 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,625 DEBUG Processing 274/857 atomic regions from SNP 81958 to 82558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,765 DEBUG Processing 1108/1136 atomic regions from SNP 332225 to 332825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,813 DEBUG Processing 42/749 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,870 DEBUG Processing 275/857 atomic regions from SNP 82258 to 82858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,057 DEBUG Processing 43/749 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,072 DEBUG Processing 1109/1136 atomic regions from SNP 332525 to 333125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,120 DEBUG Processing 276/857 atomic regions from SNP 82558 to 83158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,295 DEBUG Processing 44/749 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,369 DEBUG Processing 277/857 atomic regions from SNP 82858 to 83458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,389 DEBUG Processing 1110/1136 atomic regions from SNP 332825 to 333425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,525 DEBUG Processing 45/749 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,620 DEBUG Processing 278/857 atomic regions from SNP 83158 to 83758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,719 DEBUG Processing 1111/1136 atomic regions from SNP 333125 to 333725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,762 DEBUG Processing 46/749 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,863 DEBUG Processing 279/857 atomic regions from SNP 83458 to 84058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,996 DEBUG Processing 47/749 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,052 DEBUG Processing 1112/1136 atomic regions from SNP 333425 to 334025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,109 DEBUG Processing 280/857 atomic regions from SNP 83758 to 84358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,232 DEBUG Processing 48/749 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,355 DEBUG Processing 281/857 atomic regions from SNP 84058 to 84658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,387 DEBUG Processing 1113/1136 atomic regions from SNP 333725 to 334325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,461 DEBUG Processing 49/749 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,629 DEBUG Processing 282/857 atomic regions from SNP 84358 to 84958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,701 DEBUG Processing 50/749 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,729 DEBUG Processing 1114/1136 atomic regions from SNP 334025 to 334625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,898 DEBUG Processing 283/857 atomic regions from SNP 84658 to 85258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,945 DEBUG Processing 51/749 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,060 DEBUG Processing 1115/1136 atomic regions from SNP 334325 to 334925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,149 DEBUG Processing 284/857 atomic regions from SNP 84958 to 85558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,180 DEBUG Processing 52/749 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,380 DEBUG Processing 1116/1136 atomic regions from SNP 334625 to 335225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,400 DEBUG Processing 285/857 atomic regions from SNP 85258 to 85858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,410 DEBUG Processing 53/749 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,643 DEBUG Processing 54/749 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,651 DEBUG Processing 286/857 atomic regions from SNP 85558 to 86158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,716 DEBUG Processing 1117/1136 atomic regions from SNP 334925 to 335525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,920 DEBUG Processing 55/749 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,950 DEBUG Processing 287/857 atomic regions from SNP 85858 to 86458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,062 DEBUG Processing 1118/1136 atomic regions from SNP 335225 to 335825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,154 DEBUG Processing 56/749 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,203 DEBUG Processing 288/857 atomic regions from SNP 86158 to 86758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,364 DEBUG Processing 1119/1136 atomic regions from SNP 335525 to 336125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,385 DEBUG Processing 57/749 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,460 DEBUG Processing 289/857 atomic regions from SNP 86458 to 87058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,638 DEBUG Processing 58/749 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,658 DEBUG Processing 1120/1136 atomic regions from SNP 335825 to 336425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,723 DEBUG Processing 290/857 atomic regions from SNP 86758 to 87358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,863 DEBUG Processing 59/749 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,960 DEBUG Processing 1121/1136 atomic regions from SNP 336125 to 336725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,982 DEBUG Processing 291/857 atomic regions from SNP 87058 to 87658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,091 DEBUG Processing 60/749 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,242 DEBUG Processing 292/857 atomic regions from SNP 87358 to 87958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,269 DEBUG Processing 1122/1136 atomic regions from SNP 336425 to 337025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,327 DEBUG Processing 61/749 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,500 DEBUG Processing 293/857 atomic regions from SNP 87658 to 88258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,577 DEBUG Processing 1123/1136 atomic regions from SNP 336725 to 337325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,611 DEBUG Processing 62/749 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,765 DEBUG Processing 294/857 atomic regions from SNP 87958 to 88558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,845 DEBUG Processing 63/749 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,884 DEBUG Processing 1124/1136 atomic regions from SNP 337025 to 337625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,018 DEBUG Processing 295/857 atomic regions from SNP 88258 to 88858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,086 DEBUG Processing 64/749 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,183 DEBUG Processing 1125/1136 atomic regions from SNP 337325 to 337925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,269 DEBUG Processing 296/857 atomic regions from SNP 88558 to 89158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,322 DEBUG Processing 65/749 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,483 DEBUG Processing 1126/1136 atomic regions from SNP 337625 to 338225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,523 DEBUG Processing 297/857 atomic regions from SNP 88858 to 89458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,577 DEBUG Processing 66/749 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,777 DEBUG Processing 298/857 atomic regions from SNP 89158 to 89758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,792 DEBUG Processing 1127/1136 atomic regions from SNP 337925 to 338525 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,842 DEBUG Processing 67/749 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,082 DEBUG Processing 299/857 atomic regions from SNP 89458 to 90058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,111 DEBUG Processing 68/749 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,149 DEBUG Processing 1128/1136 atomic regions from SNP 338225 to 338825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,335 DEBUG Processing 300/857 atomic regions from SNP 89758 to 90358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,346 DEBUG Processing 69/749 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,452 DEBUG Processing 1129/1136 atomic regions from SNP 338525 to 339125 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,617 DEBUG Processing 301/857 atomic regions from SNP 90058 to 90658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,617 DEBUG Processing 70/749 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,779 DEBUG Processing 1130/1136 atomic regions from SNP 338825 to 339425 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,858 DEBUG Processing 71/749 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,881 DEBUG Processing 302/857 atomic regions from SNP 90358 to 90958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,082 DEBUG Processing 1131/1136 atomic regions from SNP 339125 to 339725 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,096 DEBUG Processing 72/749 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,150 DEBUG Processing 303/857 atomic regions from SNP 90658 to 91258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,332 DEBUG Processing 73/749 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,381 DEBUG Processing 1132/1136 atomic regions from SNP 339425 to 340025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,405 DEBUG Processing 304/857 atomic regions from SNP 90958 to 91558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,572 DEBUG Processing 74/749 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,669 DEBUG Processing 305/857 atomic regions from SNP 91258 to 91858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,680 DEBUG Processing 1133/1136 atomic regions from SNP 339725 to 340325 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,756 DEBUG Segmenting atomic regions: 2025-01-31 09:49:02,815 DEBUG Processing 75/749 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,861 DEBUG Processing 1/706 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,923 DEBUG Processing 306/857 atomic regions from SNP 91558 to 92158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,997 DEBUG Processing 1134/1136 atomic regions from SNP 340025 to 340625 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,061 DEBUG Processing 76/749 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,107 DEBUG Processing 2/706 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,181 DEBUG Processing 307/857 atomic regions from SNP 91858 to 92458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,292 DEBUG Processing 77/749 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,302 DEBUG Processing 1135/1136 atomic regions from SNP 340325 to 340925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,352 DEBUG Processing 3/706 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,436 DEBUG Processing 308/857 atomic regions from SNP 92158 to 92758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,527 DEBUG Processing 78/749 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,589 DEBUG Processing 4/706 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,613 DEBUG Processing 1136/1136 atomic regions from SNP 340625 to 341225 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,690 DEBUG Processing 309/857 atomic regions from SNP 92458 to 93058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,764 DEBUG Processing 79/749 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,776 DEBUG Unique SNPs positions in subchromosome 1: 341226 2025-01-31 09:49:03,829 DEBUG Processing 5/706 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,945 DEBUG Processing 310/857 atomic regions from SNP 92758 to 93358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,997 DEBUG Processing 80/749 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,083 DEBUG Processing 6/706 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,195 DEBUG Processing 311/857 atomic regions from SNP 93058 to 93658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,222 DEBUG Processing 81/749 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,344 DEBUG Processing 7/706 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,447 DEBUG Processing 82/749 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,447 DEBUG Processing 312/857 atomic regions from SNP 93358 to 93958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,599 DEBUG Processing 8/706 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,681 DEBUG Processing 83/749 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,701 DEBUG Processing 313/857 atomic regions from SNP 93658 to 94258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,850 DEBUG Processing 9/706 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,915 DEBUG Processing 84/749 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,951 DEBUG Processing 314/857 atomic regions from SNP 93958 to 94558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,115 DEBUG Processing 10/706 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,166 DEBUG Processing 85/749 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,204 DEBUG Processing 315/857 atomic regions from SNP 94258 to 94858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,374 DEBUG Processing 11/706 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,405 DEBUG Processing 86/749 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,459 DEBUG Processing 316/857 atomic regions from SNP 94558 to 95158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,637 DEBUG Processing 87/749 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,637 DEBUG Processing 12/706 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,712 DEBUG Processing 317/857 atomic regions from SNP 94858 to 95458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,877 DEBUG Processing 88/749 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,896 DEBUG Processing 13/706 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,966 DEBUG Processing 318/857 atomic regions from SNP 95158 to 95758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,111 DEBUG Processing 89/749 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,161 DEBUG Processing 14/706 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,214 DEBUG Processing 319/857 atomic regions from SNP 95458 to 96058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,342 DEBUG Processing 90/749 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,427 DEBUG Processing 15/706 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,469 DEBUG Processing 320/857 atomic regions from SNP 95758 to 96358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,567 DEBUG Processing 91/749 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,664 DEBUG Processing 16/706 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,730 DEBUG Processing 321/857 atomic regions from SNP 96058 to 96658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,794 DEBUG Processing 92/749 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,899 DEBUG Processing 17/706 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,987 DEBUG Processing 322/857 atomic regions from SNP 96358 to 96958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,025 DEBUG Processing 93/749 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,125 DEBUG Processing 18/706 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,246 DEBUG Processing 323/857 atomic regions from SNP 96658 to 97258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,265 DEBUG Processing 94/749 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,353 DEBUG Processing 19/706 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,500 DEBUG Processing 324/857 atomic regions from SNP 96958 to 97558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,505 DEBUG Processing 95/749 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,587 DEBUG Processing 20/706 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,698 DEBUG Segmenting atomic regions: 2025-01-31 09:49:07,745 DEBUG Processing 96/749 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,759 DEBUG Processing 325/857 atomic regions from SNP 97258 to 97858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,798 DEBUG Processing 1/734 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,830 DEBUG Processing 21/706 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,996 DEBUG Processing 97/749 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,015 DEBUG Processing 326/857 atomic regions from SNP 97558 to 98158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,053 DEBUG Processing 2/734 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,113 DEBUG Processing 22/706 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,227 DEBUG Processing 98/749 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,265 DEBUG Processing 327/857 atomic regions from SNP 97858 to 98458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,304 DEBUG Processing 3/734 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,389 DEBUG Processing 23/706 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,460 DEBUG Processing 99/749 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,513 DEBUG Processing 328/857 atomic regions from SNP 98158 to 98758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,553 DEBUG Processing 4/734 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,661 DEBUG Processing 24/706 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,702 DEBUG Processing 100/749 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,765 DEBUG Processing 329/857 atomic regions from SNP 98458 to 99058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,783 DEBUG Processing 5/734 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,923 DEBUG Processing 25/706 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,953 DEBUG Processing 101/749 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,017 DEBUG Processing 330/857 atomic regions from SNP 98758 to 99358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,023 DEBUG Processing 6/734 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,161 DEBUG Processing 26/706 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,206 DEBUG Processing 102/749 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,273 DEBUG Processing 331/857 atomic regions from SNP 99058 to 99658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,280 DEBUG Processing 7/734 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,393 DEBUG Processing 27/706 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,440 DEBUG Processing 103/749 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,524 DEBUG Processing 332/857 atomic regions from SNP 99358 to 99958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,537 DEBUG Processing 8/734 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,656 DEBUG Processing 28/706 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,673 DEBUG Processing 104/749 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,762 DEBUG Processing 9/734 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,770 DEBUG Processing 333/857 atomic regions from SNP 99658 to 100258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,914 DEBUG Processing 105/749 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,929 DEBUG Processing 29/706 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,983 DEBUG Processing 10/734 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,018 DEBUG Processing 334/857 atomic regions from SNP 99958 to 100558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,169 DEBUG Processing 106/749 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,198 DEBUG Processing 30/706 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,213 DEBUG Processing 11/734 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,265 DEBUG Processing 335/857 atomic regions from SNP 100258 to 100858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,422 DEBUG Processing 107/749 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,453 DEBUG Processing 12/734 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,457 DEBUG Processing 31/706 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,514 DEBUG Processing 336/857 atomic regions from SNP 100558 to 101158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,670 DEBUG Processing 108/749 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,694 DEBUG Processing 13/734 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,740 DEBUG Processing 32/706 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,768 DEBUG Processing 337/857 atomic regions from SNP 100858 to 101458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,907 DEBUG Processing 109/749 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,926 DEBUG Processing 14/734 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,018 DEBUG Processing 33/706 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,018 DEBUG Processing 338/857 atomic regions from SNP 101158 to 101758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,142 DEBUG Processing 110/749 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,157 DEBUG Processing 15/734 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,263 DEBUG Processing 339/857 atomic regions from SNP 101458 to 102058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,286 DEBUG Processing 34/706 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,381 DEBUG Processing 111/749 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,385 DEBUG Processing 16/734 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,503 DEBUG Processing 340/857 atomic regions from SNP 101758 to 102358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,560 DEBUG Processing 35/706 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,624 DEBUG Processing 17/734 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,625 DEBUG Processing 112/749 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,752 DEBUG Processing 341/857 atomic regions from SNP 102058 to 102658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,820 DEBUG Processing 36/706 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,863 DEBUG Processing 18/734 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,868 DEBUG Processing 113/749 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,994 DEBUG Processing 342/857 atomic regions from SNP 102358 to 102958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,060 DEBUG Processing 37/706 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,096 DEBUG Processing 19/734 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,111 DEBUG Processing 114/749 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,238 DEBUG Processing 343/857 atomic regions from SNP 102658 to 103258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,297 DEBUG Processing 38/706 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,328 DEBUG Processing 20/734 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,350 DEBUG Processing 115/749 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,483 DEBUG Processing 344/857 atomic regions from SNP 102958 to 103558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,543 DEBUG Processing 39/706 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,563 DEBUG Processing 21/734 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,588 DEBUG Processing 116/749 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,730 DEBUG Processing 345/857 atomic regions from SNP 103258 to 103858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,797 DEBUG Processing 22/734 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,801 DEBUG Processing 40/706 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,829 DEBUG Processing 117/749 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,978 DEBUG Processing 346/857 atomic regions from SNP 103558 to 104158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,032 DEBUG Processing 23/734 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,070 DEBUG Processing 118/749 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,084 DEBUG Processing 41/706 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,230 DEBUG Processing 347/857 atomic regions from SNP 103858 to 104458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,267 DEBUG Processing 24/734 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,315 DEBUG Processing 119/749 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,349 DEBUG Processing 42/706 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,479 DEBUG Processing 348/857 atomic regions from SNP 104158 to 104758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,491 DEBUG Processing 25/734 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,554 DEBUG Processing 120/749 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,618 DEBUG Processing 43/706 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,712 DEBUG Processing 26/734 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,726 DEBUG Processing 349/857 atomic regions from SNP 104458 to 105058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,790 DEBUG Processing 121/749 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,879 DEBUG Processing 44/706 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,938 DEBUG Processing 27/734 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,974 DEBUG Processing 350/857 atomic regions from SNP 104758 to 105358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,018 DEBUG Processing 122/749 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,123 DEBUG Processing 45/706 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,170 DEBUG Processing 28/734 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,227 DEBUG Processing 351/857 atomic regions from SNP 105058 to 105658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,256 DEBUG Processing 123/749 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,362 DEBUG Processing 46/706 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,397 DEBUG Processing 29/734 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,483 DEBUG Processing 352/857 atomic regions from SNP 105358 to 105958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,494 DEBUG Processing 124/749 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,598 DEBUG Processing 47/706 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,626 DEBUG Processing 30/734 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,736 DEBUG Processing 125/749 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,737 DEBUG Processing 353/857 atomic regions from SNP 105658 to 106258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,840 DEBUG Processing 48/706 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,856 DEBUG Processing 31/734 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,974 DEBUG Processing 126/749 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,992 DEBUG Processing 354/857 atomic regions from SNP 105958 to 106558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,082 DEBUG Processing 49/706 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,090 DEBUG Processing 32/734 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,216 DEBUG Processing 127/749 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,245 DEBUG Processing 355/857 atomic regions from SNP 106258 to 106858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,326 DEBUG Processing 33/734 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,327 DEBUG Processing 50/706 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,464 DEBUG Processing 128/749 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,503 DEBUG Processing 356/857 atomic regions from SNP 106558 to 107158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,553 DEBUG Processing 34/734 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,562 DEBUG Processing 51/706 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,716 DEBUG Processing 129/749 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,763 DEBUG Processing 357/857 atomic regions from SNP 106858 to 107458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,786 DEBUG Processing 35/734 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,803 DEBUG Processing 52/706 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,969 DEBUG Processing 130/749 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,026 DEBUG Processing 358/857 atomic regions from SNP 107158 to 107758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,032 DEBUG Processing 36/734 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,051 DEBUG Processing 53/706 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,221 DEBUG Processing 131/749 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,276 DEBUG Processing 37/734 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,288 DEBUG Processing 359/857 atomic regions from SNP 107458 to 108058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,297 DEBUG Processing 54/706 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,471 DEBUG Processing 132/749 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,520 DEBUG Processing 38/734 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,545 DEBUG Processing 360/857 atomic regions from SNP 107758 to 108358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,567 DEBUG Processing 55/706 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,719 DEBUG Processing 133/749 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,759 DEBUG Processing 39/734 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,799 DEBUG Processing 361/857 atomic regions from SNP 108058 to 108658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,807 DEBUG Processing 56/706 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,969 DEBUG Processing 134/749 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,001 DEBUG Processing 40/734 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,048 DEBUG Processing 57/706 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,055 DEBUG Processing 362/857 atomic regions from SNP 108358 to 108958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,217 DEBUG Processing 135/749 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,246 DEBUG Processing 41/734 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,298 DEBUG Processing 58/706 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,313 DEBUG Processing 363/857 atomic regions from SNP 108658 to 109258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,453 DEBUG Processing 136/749 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,486 DEBUG Processing 42/734 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,554 DEBUG Processing 59/706 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,574 DEBUG Processing 364/857 atomic regions from SNP 108958 to 109558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,683 DEBUG Processing 137/749 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,708 DEBUG Processing 43/734 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,806 DEBUG Processing 60/706 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,835 DEBUG Processing 365/857 atomic regions from SNP 109258 to 109858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,920 DEBUG Processing 138/749 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,936 DEBUG Processing 44/734 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,067 DEBUG Processing 61/706 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,094 DEBUG Processing 366/857 atomic regions from SNP 109558 to 110158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,168 DEBUG Processing 139/749 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,170 DEBUG Processing 45/734 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,329 DEBUG Processing 62/706 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,352 DEBUG Processing 367/857 atomic regions from SNP 109858 to 110458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,413 DEBUG Processing 140/749 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,432 DEBUG Processing 46/734 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,589 DEBUG Processing 63/706 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,609 DEBUG Processing 368/857 atomic regions from SNP 110158 to 110758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,655 DEBUG Processing 141/749 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,674 DEBUG Processing 47/734 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,848 DEBUG Processing 64/706 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,867 DEBUG Processing 369/857 atomic regions from SNP 110458 to 111058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,899 DEBUG Processing 142/749 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,913 DEBUG Processing 48/734 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,095 DEBUG Processing 65/706 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,127 DEBUG Processing 370/857 atomic regions from SNP 110758 to 111358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,150 DEBUG Processing 143/749 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,179 DEBUG Processing 49/734 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,334 DEBUG Processing 66/706 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,389 DEBUG Processing 371/857 atomic regions from SNP 111058 to 111658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,402 DEBUG Processing 144/749 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,456 DEBUG Processing 50/734 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,570 DEBUG Processing 67/706 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,649 DEBUG Processing 145/749 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,652 DEBUG Processing 372/857 atomic regions from SNP 111358 to 111958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,710 DEBUG Processing 51/734 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,810 DEBUG Processing 68/706 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,889 DEBUG Processing 146/749 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,920 DEBUG Processing 373/857 atomic regions from SNP 111658 to 112258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,955 DEBUG Processing 52/734 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,055 DEBUG Processing 69/706 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,132 DEBUG Processing 147/749 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,190 DEBUG Processing 374/857 atomic regions from SNP 111958 to 112558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,196 DEBUG Processing 53/734 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,296 DEBUG Processing 70/706 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,383 DEBUG Processing 148/749 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,442 DEBUG Processing 54/734 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,445 DEBUG Processing 375/857 atomic regions from SNP 112258 to 112858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,533 DEBUG Processing 71/706 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,627 DEBUG Processing 149/749 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,687 DEBUG Processing 55/734 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,697 DEBUG Processing 376/857 atomic regions from SNP 112558 to 113158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,774 DEBUG Processing 72/706 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,870 DEBUG Processing 150/749 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,933 DEBUG Processing 56/734 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,956 DEBUG Processing 377/857 atomic regions from SNP 112858 to 113458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,022 DEBUG Processing 73/706 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,118 DEBUG Processing 151/749 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,193 DEBUG Processing 57/734 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,218 DEBUG Processing 378/857 atomic regions from SNP 113158 to 113758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,274 DEBUG Processing 74/706 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,364 DEBUG Processing 152/749 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,441 DEBUG Processing 58/734 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,472 DEBUG Processing 379/857 atomic regions from SNP 113458 to 114058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,508 DEBUG Processing 75/706 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,610 DEBUG Processing 153/749 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,698 DEBUG Processing 59/734 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,730 DEBUG Processing 380/857 atomic regions from SNP 113758 to 114358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,748 DEBUG Processing 76/706 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,849 DEBUG Processing 154/749 atomic regions from SNP 46053 to 46653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,969 DEBUG Processing 60/734 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,987 DEBUG Processing 77/706 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,991 DEBUG Processing 381/857 atomic regions from SNP 114058 to 114658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,076 DEBUG Processing 155/749 atomic regions from SNP 46353 to 46953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,223 DEBUG Processing 61/734 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,225 DEBUG Processing 78/706 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,246 DEBUG Processing 382/857 atomic regions from SNP 114358 to 114958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,309 DEBUG Processing 156/749 atomic regions from SNP 46653 to 47253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,468 DEBUG Processing 62/734 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,482 DEBUG Processing 79/706 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,491 DEBUG Processing 383/857 atomic regions from SNP 114658 to 115258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,546 DEBUG Processing 157/749 atomic regions from SNP 46953 to 47553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,707 DEBUG Processing 63/734 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,736 DEBUG Processing 384/857 atomic regions from SNP 114958 to 115558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,739 DEBUG Processing 80/706 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,776 DEBUG Processing 158/749 atomic regions from SNP 47253 to 47853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,961 DEBUG Processing 64/734 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,987 DEBUG Processing 81/706 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,991 DEBUG Processing 385/857 atomic regions from SNP 115258 to 115858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,018 DEBUG Processing 159/749 atomic regions from SNP 47553 to 48153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,203 DEBUG Processing 65/734 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,241 DEBUG Processing 82/706 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,252 DEBUG Processing 386/857 atomic regions from SNP 115558 to 116158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,263 DEBUG Processing 160/749 atomic regions from SNP 47853 to 48453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,435 DEBUG Processing 66/734 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,480 DEBUG Processing 83/706 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,501 DEBUG Processing 161/749 atomic regions from SNP 48153 to 48753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,505 DEBUG Processing 387/857 atomic regions from SNP 115858 to 116458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,663 DEBUG Processing 67/734 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,724 DEBUG Processing 84/706 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,742 DEBUG Processing 162/749 atomic regions from SNP 48453 to 49053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,760 DEBUG Processing 388/857 atomic regions from SNP 116158 to 116758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,890 DEBUG Processing 68/734 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,968 DEBUG Processing 85/706 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,983 DEBUG Processing 163/749 atomic regions from SNP 48753 to 49353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,016 DEBUG Processing 389/857 atomic regions from SNP 116458 to 117058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,117 DEBUG Processing 69/734 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,216 DEBUG Processing 86/706 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,228 DEBUG Processing 164/749 atomic regions from SNP 49053 to 49653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,268 DEBUG Processing 390/857 atomic regions from SNP 116758 to 117358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,371 DEBUG Processing 70/734 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,463 DEBUG Processing 87/706 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,466 DEBUG Processing 165/749 atomic regions from SNP 49353 to 49953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,521 DEBUG Processing 391/857 atomic regions from SNP 117058 to 117658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,615 DEBUG Processing 71/734 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,707 DEBUG Processing 166/749 atomic regions from SNP 49653 to 50253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,707 DEBUG Processing 88/706 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,802 DEBUG Processing 392/857 atomic regions from SNP 117358 to 117958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,834 DEBUG Processing 72/734 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,936 DEBUG Processing 167/749 atomic regions from SNP 49953 to 50553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,941 DEBUG Processing 89/706 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,056 DEBUG Processing 73/734 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,079 DEBUG Processing 393/857 atomic regions from SNP 117658 to 118258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,174 DEBUG Processing 90/706 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,178 DEBUG Processing 168/749 atomic regions from SNP 50253 to 50853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,289 DEBUG Processing 74/734 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,341 DEBUG Processing 394/857 atomic regions from SNP 117958 to 118558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,410 DEBUG Processing 169/749 atomic regions from SNP 50553 to 51153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,411 DEBUG Processing 91/706 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,528 DEBUG Processing 75/734 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,604 DEBUG Processing 395/857 atomic regions from SNP 118258 to 118858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,644 DEBUG Processing 170/749 atomic regions from SNP 50853 to 51453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,650 DEBUG Processing 92/706 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,763 DEBUG Processing 76/734 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,874 DEBUG Processing 396/857 atomic regions from SNP 118558 to 119158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,879 DEBUG Processing 171/749 atomic regions from SNP 51153 to 51753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,888 DEBUG Processing 93/706 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,991 DEBUG Processing 77/734 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,121 DEBUG Processing 172/749 atomic regions from SNP 51453 to 52053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,131 DEBUG Processing 94/706 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,142 DEBUG Processing 397/857 atomic regions from SNP 118858 to 119458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,222 DEBUG Processing 78/734 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,363 DEBUG Processing 173/749 atomic regions from SNP 51753 to 52353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,372 DEBUG Processing 95/706 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,404 DEBUG Processing 398/857 atomic regions from SNP 119158 to 119758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,458 DEBUG Processing 79/734 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,596 DEBUG Processing 174/749 atomic regions from SNP 52053 to 52653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,608 DEBUG Processing 96/706 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,668 DEBUG Processing 399/857 atomic regions from SNP 119458 to 120058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,697 DEBUG Processing 80/734 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,823 DEBUG Processing 175/749 atomic regions from SNP 52353 to 52953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,844 DEBUG Processing 97/706 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,925 DEBUG Processing 400/857 atomic regions from SNP 119758 to 120358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,934 DEBUG Processing 81/734 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,051 DEBUG Processing 176/749 atomic regions from SNP 52653 to 53253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,082 DEBUG Processing 98/706 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,169 DEBUG Processing 82/734 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,198 DEBUG Processing 401/857 atomic regions from SNP 120058 to 120658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,286 DEBUG Processing 177/749 atomic regions from SNP 52953 to 53553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,319 DEBUG Processing 99/706 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,402 DEBUG Processing 83/734 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,478 DEBUG Processing 402/857 atomic regions from SNP 120358 to 120958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,516 DEBUG Processing 178/749 atomic regions from SNP 53253 to 53853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,557 DEBUG Processing 100/706 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,638 DEBUG Processing 84/734 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,750 DEBUG Processing 179/749 atomic regions from SNP 53553 to 54153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,764 DEBUG Processing 403/857 atomic regions from SNP 120658 to 121258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,797 DEBUG Processing 101/706 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,872 DEBUG Processing 85/734 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,987 DEBUG Processing 180/749 atomic regions from SNP 53853 to 54453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,032 DEBUG Processing 102/706 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,039 DEBUG Processing 404/857 atomic regions from SNP 120958 to 121558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,110 DEBUG Processing 86/734 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,230 DEBUG Processing 181/749 atomic regions from SNP 54153 to 54753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,274 DEBUG Processing 103/706 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,309 DEBUG Processing 405/857 atomic regions from SNP 121258 to 121858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,337 DEBUG Processing 87/734 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,473 DEBUG Processing 182/749 atomic regions from SNP 54453 to 55053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,520 DEBUG Processing 104/706 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,568 DEBUG Processing 88/734 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,580 DEBUG Processing 406/857 atomic regions from SNP 121558 to 122158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,717 DEBUG Processing 183/749 atomic regions from SNP 54753 to 55353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,769 DEBUG Processing 105/706 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,803 DEBUG Processing 89/734 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,842 DEBUG Processing 407/857 atomic regions from SNP 121858 to 122458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,962 DEBUG Processing 184/749 atomic regions from SNP 55053 to 55653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,021 DEBUG Processing 106/706 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,045 DEBUG Processing 90/734 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,100 DEBUG Processing 408/857 atomic regions from SNP 122158 to 122758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,219 DEBUG Processing 185/749 atomic regions from SNP 55353 to 55953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,289 DEBUG Processing 107/706 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,304 DEBUG Processing 91/734 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,358 DEBUG Processing 409/857 atomic regions from SNP 122458 to 123058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,465 DEBUG Processing 186/749 atomic regions from SNP 55653 to 56253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,596 DEBUG Processing 108/706 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,605 DEBUG Processing 92/734 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,646 DEBUG Processing 410/857 atomic regions from SNP 122758 to 123358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,701 DEBUG Processing 187/749 atomic regions from SNP 55953 to 56553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,843 DEBUG Processing 93/734 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,863 DEBUG Processing 109/706 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,911 DEBUG Processing 411/857 atomic regions from SNP 123058 to 123658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,950 DEBUG Processing 188/749 atomic regions from SNP 56253 to 56853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,066 DEBUG Processing 94/734 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,130 DEBUG Processing 110/706 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,173 DEBUG Processing 412/857 atomic regions from SNP 123358 to 123958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,196 DEBUG Processing 189/749 atomic regions from SNP 56553 to 57153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,293 DEBUG Processing 95/734 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,389 DEBUG Processing 111/706 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,433 DEBUG Processing 413/857 atomic regions from SNP 123658 to 124258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,443 DEBUG Processing 190/749 atomic regions from SNP 56853 to 57453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,527 DEBUG Processing 96/734 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,659 DEBUG Processing 112/706 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,686 DEBUG Processing 191/749 atomic regions from SNP 57153 to 57753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,692 DEBUG Processing 414/857 atomic regions from SNP 123958 to 124558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,772 DEBUG Processing 97/734 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,971 DEBUG Processing 192/749 atomic regions from SNP 57453 to 58053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,991 DEBUG Processing 113/706 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,009 DEBUG Processing 415/857 atomic regions from SNP 124258 to 124858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,058 DEBUG Processing 98/734 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,279 DEBUG Processing 193/749 atomic regions from SNP 57753 to 58353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,363 DEBUG Processing 114/706 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,373 DEBUG Processing 416/857 atomic regions from SNP 124558 to 125158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,381 DEBUG Processing 99/734 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,509 DEBUG Processing 194/749 atomic regions from SNP 58053 to 58653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,727 DEBUG Processing 100/734 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,738 DEBUG Processing 115/706 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,747 DEBUG Processing 417/857 atomic regions from SNP 124858 to 125458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,832 DEBUG Processing 195/749 atomic regions from SNP 58353 to 58953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,049 DEBUG Processing 101/734 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,103 DEBUG Processing 418/857 atomic regions from SNP 125158 to 125758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,108 DEBUG Processing 116/706 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,123 DEBUG Processing 196/749 atomic regions from SNP 58653 to 59253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,296 DEBUG Processing 102/734 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,376 DEBUG Processing 419/857 atomic regions from SNP 125458 to 126058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,387 DEBUG Processing 197/749 atomic regions from SNP 58953 to 59553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,398 DEBUG Processing 117/706 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,529 DEBUG Processing 103/734 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,621 DEBUG Processing 198/749 atomic regions from SNP 59253 to 59853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,638 DEBUG Processing 420/857 atomic regions from SNP 125758 to 126358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,675 DEBUG Processing 118/706 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,771 DEBUG Processing 104/734 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,862 DEBUG Processing 199/749 atomic regions from SNP 59553 to 60153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,907 DEBUG Processing 421/857 atomic regions from SNP 126058 to 126658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,949 DEBUG Processing 119/706 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,024 DEBUG Processing 105/734 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,096 DEBUG Processing 200/749 atomic regions from SNP 59853 to 60453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,183 DEBUG Processing 422/857 atomic regions from SNP 126358 to 126958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,210 DEBUG Processing 120/706 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,278 DEBUG Processing 106/734 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,345 DEBUG Processing 201/749 atomic regions from SNP 60153 to 60753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,444 DEBUG Processing 423/857 atomic regions from SNP 126658 to 127258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,468 DEBUG Processing 121/706 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,522 DEBUG Processing 107/734 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,592 DEBUG Processing 202/749 atomic regions from SNP 60453 to 61053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,715 DEBUG Processing 424/857 atomic regions from SNP 126958 to 127558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,734 DEBUG Processing 122/706 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,783 DEBUG Processing 108/734 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,836 DEBUG Processing 203/749 atomic regions from SNP 60753 to 61353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,984 DEBUG Processing 425/857 atomic regions from SNP 127258 to 127858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,994 DEBUG Processing 123/706 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,042 DEBUG Processing 109/734 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,076 DEBUG Processing 204/749 atomic regions from SNP 61053 to 61653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,250 DEBUG Processing 426/857 atomic regions from SNP 127558 to 128158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,258 DEBUG Processing 124/706 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,283 DEBUG Processing 110/734 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,318 DEBUG Processing 205/749 atomic regions from SNP 61353 to 61953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,513 DEBUG Processing 427/857 atomic regions from SNP 127858 to 128458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,519 DEBUG Processing 111/734 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,529 DEBUG Processing 125/706 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,556 DEBUG Processing 206/749 atomic regions from SNP 61653 to 62253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,756 DEBUG Processing 112/734 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,776 DEBUG Processing 428/857 atomic regions from SNP 128158 to 128758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,796 DEBUG Processing 126/706 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,799 DEBUG Processing 207/749 atomic regions from SNP 61953 to 62553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,989 DEBUG Processing 113/734 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,032 DEBUG Processing 429/857 atomic regions from SNP 128458 to 129058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,037 DEBUG Processing 208/749 atomic regions from SNP 62253 to 62853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,042 DEBUG Processing 127/706 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,118 DEBUG Subchromosome time: 425.61806711182, subchromosome SNPs: 341226 2025-01-31 09:49:35,118 DEBUG Estimated BADs: [0.81, 3.24, 1.62, 0.54, 1.62, 4.86, 14.57, 1.62, 3.24, 12.95, 3.24, 1.62, 0.54, 1.62, 0.54, 3.24, 1.62, 4.86, 1.62, 0.40, 0.81, 0.40, 1.62, 3.24, 1.62, 3.24, 1.62, 6.48, 1.62, 3.24, 1.62, 3.24] SNP counts: [51914, 11312, 14132, 7514, 39870, 2186, 497, 17237, 1660, 394, 13401, 2699, 14983, 6619, 17037, 3666, 19411, 10318, 5770, 5289, 3299, 7508, 10478, 3026, 14100, 5407, 6866, 638, 12319, 13275, 7998, 10403] SNP IDs counts: [51914, 11312, 14132, 7514, 39870, 2186, 497, 17237, 1660, 394, 13401, 2699, 14983, 6619, 17037, 3666, 19411, 10318, 5770, 5289, 3299, 7508, 10478, 3026, 14100, 5407, 6866, 638, 12319, 13275, 7998, 10403] Critical gap: 756796bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 33.45Mbp, 39.48Mbp, 47.49Mbp, 51.90Mbp, 73.90Mbp, 75.09Mbp, 75.38Mbp, 84.98Mbp, 86.35Mbp, 86.55Mbp, 93.68Mbp, 95.38Mbp, 104.28Mbp, 108.03Mbp, 118.31Mbp, 120.23Mbp, 130.99Mbp, 136.38Mbp, 139.53Mbp, 142.77Mbp, 144.76Mbp, 149.25Mbp, 154.97Mbp, 156.62Mbp, 164.24Mbp, 167.26Mbp, 171.00Mbp, 171.34Mbp, 178.32Mbp, 185.48Mbp, 189.74Mbp, 195.47Mbp] 2025-01-31 09:49:35,118 DEBUG chr1 time: 425.61890532821417 s 2025-01-31 09:49:35,223 DEBUG Processing 114/734 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,278 DEBUG Processing 209/749 atomic regions from SNP 62553 to 63153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,289 DEBUG Processing 128/706 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,290 DEBUG Processing 430/857 atomic regions from SNP 128758 to 129358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,361 DEBUG chr1: Fitting background model for 32 segments 2025-01-31 09:49:35,456 DEBUG Processing 115/734 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,524 DEBUG Processing 210/749 atomic regions from SNP 62853 to 63453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,539 DEBUG Processing 129/706 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,554 DEBUG Processing 431/857 atomic regions from SNP 129058 to 129658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,684 DEBUG Processing 116/734 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,760 DEBUG Processing 211/749 atomic regions from SNP 63153 to 63753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,785 DEBUG Processing 130/706 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,818 DEBUG Processing 432/857 atomic regions from SNP 129358 to 129958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,902 DEBUG Processing 117/734 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,988 DEBUG Processing 212/749 atomic regions from SNP 63453 to 64053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,020 DEBUG Processing 131/706 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,079 DEBUG Processing 433/857 atomic regions from SNP 129658 to 130258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,125 DEBUG Processing 118/734 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,223 DEBUG Processing 213/749 atomic regions from SNP 63753 to 64353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,253 DEBUG Processing 132/706 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,336 DEBUG Processing 434/857 atomic regions from SNP 129958 to 130558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,354 DEBUG Processing 119/734 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,461 DEBUG Processing 214/749 atomic regions from SNP 64053 to 64653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,489 DEBUG Processing 133/706 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,584 DEBUG Processing 120/734 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,597 DEBUG Processing 435/857 atomic regions from SNP 130258 to 130858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,698 DEBUG Processing 215/749 atomic regions from SNP 64353 to 64953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,727 DEBUG Processing 134/706 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,810 DEBUG Processing 121/734 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,856 DEBUG Processing 436/857 atomic regions from SNP 130558 to 131158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,944 DEBUG Processing 216/749 atomic regions from SNP 64653 to 65253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,967 DEBUG Processing 135/706 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,049 DEBUG Processing 122/734 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,132 DEBUG Processing 437/857 atomic regions from SNP 130858 to 131458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,228 DEBUG Processing 217/749 atomic regions from SNP 64953 to 65553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,228 DEBUG Processing 136/706 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,329 DEBUG Processing 123/734 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,400 DEBUG Processing 438/857 atomic regions from SNP 131158 to 131758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,486 DEBUG Processing 137/706 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,488 DEBUG Processing 218/749 atomic regions from SNP 65253 to 65853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,589 DEBUG Processing 124/734 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,668 DEBUG Processing 439/857 atomic regions from SNP 131458 to 132058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,718 DEBUG Processing 219/749 atomic regions from SNP 65553 to 66153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,734 DEBUG Processing 138/706 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,830 DEBUG Processing 125/734 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,933 DEBUG Processing 440/857 atomic regions from SNP 131758 to 132358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,949 DEBUG Processing 220/749 atomic regions from SNP 65853 to 66453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,985 DEBUG Processing 139/706 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,066 DEBUG Processing 126/734 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,186 DEBUG Processing 221/749 atomic regions from SNP 66153 to 66753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,206 DEBUG Processing 441/857 atomic regions from SNP 132058 to 132658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,239 DEBUG Processing 140/706 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,307 DEBUG Processing 127/734 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,413 DEBUG Processing 222/749 atomic regions from SNP 66453 to 67053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,474 DEBUG Processing 442/857 atomic regions from SNP 132358 to 132958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,494 DEBUG Processing 141/706 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,549 DEBUG Processing 128/734 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,653 DEBUG Processing 223/749 atomic regions from SNP 66753 to 67353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,744 DEBUG Processing 443/857 atomic regions from SNP 132658 to 133258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,751 DEBUG Processing 142/706 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,793 DEBUG Processing 129/734 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,897 DEBUG Processing 224/749 atomic regions from SNP 67053 to 67653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,996 DEBUG Processing 143/706 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,013 DEBUG Processing 444/857 atomic regions from SNP 132958 to 133558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,031 DEBUG Processing 130/734 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,161 DEBUG Processing 225/749 atomic regions from SNP 67353 to 67953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,240 DEBUG Processing 144/706 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,267 DEBUG Processing 131/734 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,278 DEBUG Processing 445/857 atomic regions from SNP 133258 to 133858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,407 DEBUG Processing 226/749 atomic regions from SNP 67653 to 68253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,481 DEBUG Processing 145/706 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,513 DEBUG Processing 132/734 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,542 DEBUG Processing 446/857 atomic regions from SNP 133558 to 134158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,663 DEBUG Processing 227/749 atomic regions from SNP 67953 to 68553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,745 DEBUG Processing 146/706 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,804 DEBUG Processing 133/734 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,847 DEBUG Processing 447/857 atomic regions from SNP 133858 to 134458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,931 DEBUG Processing 228/749 atomic regions from SNP 68253 to 68853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,982 DEBUG Processing 147/706 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,044 DEBUG Processing 134/734 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,108 DEBUG Processing 448/857 atomic regions from SNP 134158 to 134758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,190 DEBUG Processing 229/749 atomic regions from SNP 68553 to 69153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,219 DEBUG Processing 148/706 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,272 DEBUG Processing 135/734 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,373 DEBUG Processing 449/857 atomic regions from SNP 134458 to 135058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,467 DEBUG Processing 230/749 atomic regions from SNP 68853 to 69453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,469 DEBUG Processing 149/706 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,507 DEBUG Processing 136/734 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,641 DEBUG Processing 450/857 atomic regions from SNP 134758 to 135358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,723 DEBUG Processing 150/706 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,736 DEBUG Processing 231/749 atomic regions from SNP 69153 to 69753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,744 DEBUG Processing 137/734 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,902 DEBUG Processing 451/857 atomic regions from SNP 135058 to 135658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,987 DEBUG Processing 151/706 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,000 DEBUG Processing 138/734 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,022 DEBUG Processing 232/749 atomic regions from SNP 69453 to 70053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,205 DEBUG Processing 452/857 atomic regions from SNP 135358 to 135958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,339 DEBUG Processing 152/706 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,343 DEBUG Processing 139/734 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,369 DEBUG Processing 233/749 atomic regions from SNP 69753 to 70353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,569 DEBUG Processing 453/857 atomic regions from SNP 135658 to 136258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,700 DEBUG Processing 140/734 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,713 DEBUG Processing 234/749 atomic regions from SNP 70053 to 70653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,715 DEBUG Processing 153/706 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,871 DEBUG Processing 454/857 atomic regions from SNP 135958 to 136558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,953 DEBUG Processing 141/734 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,006 DEBUG Processing 235/749 atomic regions from SNP 70353 to 70953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,012 DEBUG Processing 154/706 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,165 DEBUG Processing 455/857 atomic regions from SNP 136258 to 136858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,213 DEBUG Processing 142/734 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,261 DEBUG Processing 236/749 atomic regions from SNP 70653 to 71253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,271 DEBUG Processing 155/706 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,432 DEBUG Processing 456/857 atomic regions from SNP 136558 to 137158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,465 DEBUG Processing 143/734 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,562 DEBUG Processing 237/749 atomic regions from SNP 70953 to 71553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,574 DEBUG Processing 156/706 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,732 DEBUG Processing 457/857 atomic regions from SNP 136858 to 137458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,741 DEBUG Processing 144/734 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,875 DEBUG Processing 238/749 atomic regions from SNP 71253 to 71853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,878 DEBUG Processing 157/706 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,984 DEBUG Processing 145/734 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,999 DEBUG Processing 458/857 atomic regions from SNP 137158 to 137758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,141 DEBUG Processing 158/706 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,147 DEBUG Processing 239/749 atomic regions from SNP 71553 to 72153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,238 DEBUG Processing 146/734 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,280 DEBUG Processing 459/857 atomic regions from SNP 137458 to 138058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,437 DEBUG Processing 240/749 atomic regions from SNP 71853 to 72453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,440 DEBUG Processing 159/706 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,551 DEBUG Processing 147/734 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,615 DEBUG Processing 460/857 atomic regions from SNP 137758 to 138358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,731 DEBUG Processing 241/749 atomic regions from SNP 72153 to 72753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,732 DEBUG Processing 160/706 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,813 DEBUG Processing 148/734 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,883 DEBUG Processing 461/857 atomic regions from SNP 138058 to 138658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,005 DEBUG Processing 242/749 atomic regions from SNP 72453 to 73053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,015 DEBUG Processing 161/706 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,103 DEBUG Processing 149/734 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,177 DEBUG Processing 462/857 atomic regions from SNP 138358 to 138958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,249 DEBUG Processing 243/749 atomic regions from SNP 72753 to 73353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,260 DEBUG Processing 162/706 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,349 DEBUG Processing 150/734 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,448 DEBUG Processing 463/857 atomic regions from SNP 138658 to 139258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,490 DEBUG Processing 244/749 atomic regions from SNP 73053 to 73653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,504 DEBUG Processing 163/706 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,584 DEBUG Processing 151/734 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,736 DEBUG Processing 245/749 atomic regions from SNP 73353 to 73953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,748 DEBUG Processing 164/706 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,751 DEBUG Processing 464/857 atomic regions from SNP 138958 to 139558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,820 DEBUG Processing 152/734 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,976 DEBUG Processing 246/749 atomic regions from SNP 73653 to 74253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,993 DEBUG Processing 165/706 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,044 DEBUG Processing 465/857 atomic regions from SNP 139258 to 139858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,046 DEBUG Processing 153/734 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,221 DEBUG Processing 247/749 atomic regions from SNP 73953 to 74553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,239 DEBUG Processing 166/706 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,291 DEBUG Processing 154/734 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,338 DEBUG Processing 466/857 atomic regions from SNP 139558 to 140158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,465 DEBUG Processing 248/749 atomic regions from SNP 74253 to 74853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,488 DEBUG Processing 167/706 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,528 DEBUG Processing 155/734 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,625 DEBUG Processing 467/857 atomic regions from SNP 139858 to 140458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,700 DEBUG Processing 249/749 atomic regions from SNP 74553 to 75153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,728 DEBUG Processing 168/706 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,757 DEBUG Processing 156/734 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,907 DEBUG Processing 468/857 atomic regions from SNP 140158 to 140758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,939 DEBUG Processing 250/749 atomic regions from SNP 74853 to 75453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,971 DEBUG Processing 169/706 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,990 DEBUG Processing 157/734 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,179 DEBUG Processing 251/749 atomic regions from SNP 75153 to 75753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,186 DEBUG Processing 469/857 atomic regions from SNP 140458 to 141058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,219 DEBUG Processing 170/706 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,222 DEBUG Processing 158/734 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,422 DEBUG Processing 252/749 atomic regions from SNP 75453 to 76053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,453 DEBUG Processing 470/857 atomic regions from SNP 140758 to 141358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,457 DEBUG Processing 159/734 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,465 DEBUG Processing 171/706 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,671 DEBUG Processing 253/749 atomic regions from SNP 75753 to 76353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,700 DEBUG Processing 160/734 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,719 DEBUG Processing 172/706 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,723 DEBUG Processing 471/857 atomic regions from SNP 141058 to 141658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,914 DEBUG Processing 254/749 atomic regions from SNP 76053 to 76653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,936 DEBUG Processing 161/734 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,961 DEBUG Processing 173/706 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,985 DEBUG Processing 472/857 atomic regions from SNP 141358 to 141958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,159 DEBUG Processing 255/749 atomic regions from SNP 76353 to 76953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,173 DEBUG Processing 162/734 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,200 DEBUG Processing 174/706 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,246 DEBUG Processing 473/857 atomic regions from SNP 141658 to 142258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,405 DEBUG Processing 256/749 atomic regions from SNP 76653 to 77253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,409 DEBUG Processing 163/734 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,442 DEBUG Processing 175/706 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,509 DEBUG Processing 474/857 atomic regions from SNP 141958 to 142558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,649 DEBUG Processing 257/749 atomic regions from SNP 76953 to 77553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,650 DEBUG Processing 164/734 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,688 DEBUG Processing 176/706 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,772 DEBUG Processing 475/857 atomic regions from SNP 142258 to 142858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,887 DEBUG Processing 165/734 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,889 DEBUG Processing 258/749 atomic regions from SNP 77253 to 77853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,925 DEBUG Processing 177/706 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,030 DEBUG Processing 476/857 atomic regions from SNP 142558 to 143158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,130 DEBUG Processing 166/734 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,133 DEBUG Processing 259/749 atomic regions from SNP 77553 to 78153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,169 DEBUG Processing 178/706 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,289 DEBUG Processing 477/857 atomic regions from SNP 142858 to 143458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,385 DEBUG Processing 167/734 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,391 DEBUG Processing 260/749 atomic regions from SNP 77853 to 78453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,423 DEBUG Processing 179/706 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,566 DEBUG Processing 478/857 atomic regions from SNP 143158 to 143758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,628 DEBUG Processing 168/734 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,642 DEBUG Processing 261/749 atomic regions from SNP 78153 to 78753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,675 DEBUG Processing 180/706 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,840 DEBUG Processing 479/857 atomic regions from SNP 143458 to 144058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,865 DEBUG Processing 169/734 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,886 DEBUG Processing 262/749 atomic regions from SNP 78453 to 79053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,926 DEBUG Processing 181/706 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,095 DEBUG Processing 480/857 atomic regions from SNP 143758 to 144358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,101 DEBUG Processing 170/734 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,133 DEBUG Processing 263/749 atomic regions from SNP 78753 to 79353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,180 DEBUG Processing 182/706 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,351 DEBUG Processing 171/734 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,376 DEBUG Processing 264/749 atomic regions from SNP 79053 to 79653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,381 DEBUG Processing 481/857 atomic regions from SNP 144058 to 144658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,430 DEBUG Processing 183/706 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,594 DEBUG Processing 172/734 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,626 DEBUG Processing 265/749 atomic regions from SNP 79353 to 79953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,664 DEBUG Processing 482/857 atomic regions from SNP 144358 to 144958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,685 DEBUG Processing 184/706 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,843 DEBUG Processing 173/734 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,870 DEBUG Processing 266/749 atomic regions from SNP 79653 to 80253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,933 DEBUG Processing 483/857 atomic regions from SNP 144658 to 145258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,936 DEBUG Processing 185/706 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,082 DEBUG Processing 174/734 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,117 DEBUG Processing 267/749 atomic regions from SNP 79953 to 80553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,189 DEBUG Processing 186/706 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,209 DEBUG Processing 484/857 atomic regions from SNP 144958 to 145558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,308 DEBUG Processing 175/734 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,357 DEBUG Processing 268/749 atomic regions from SNP 80253 to 80853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,443 DEBUG Processing 187/706 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,498 DEBUG Processing 485/857 atomic regions from SNP 145258 to 145858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,539 DEBUG Processing 176/734 atomic regions from SNP 52675 to 53276 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,600 DEBUG Processing 269/749 atomic regions from SNP 80553 to 81153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,697 DEBUG Processing 188/706 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,778 DEBUG Processing 177/734 atomic regions from SNP 52976 to 53577 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,784 DEBUG Processing 486/857 atomic regions from SNP 145558 to 146158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,839 DEBUG Processing 270/749 atomic regions from SNP 80853 to 81453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,949 DEBUG Processing 189/706 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,020 DEBUG Processing 178/734 atomic regions from SNP 53277 to 53878 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,056 DEBUG Processing 487/857 atomic regions from SNP 145858 to 146458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,078 DEBUG Processing 271/749 atomic regions from SNP 81153 to 81753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,193 DEBUG Processing 190/706 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,259 DEBUG Processing 179/734 atomic regions from SNP 53578 to 54179 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,314 DEBUG Processing 272/749 atomic regions from SNP 81453 to 82053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,320 DEBUG Processing 488/857 atomic regions from SNP 146158 to 146758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,439 DEBUG Processing 191/706 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,499 DEBUG Processing 180/734 atomic regions from SNP 53879 to 54480 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,555 DEBUG Processing 273/749 atomic regions from SNP 81753 to 82353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,588 DEBUG Processing 489/857 atomic regions from SNP 146458 to 147058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,684 DEBUG Processing 192/706 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,741 DEBUG Processing 181/734 atomic regions from SNP 54180 to 54781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,794 DEBUG Processing 274/749 atomic regions from SNP 82053 to 82653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,851 DEBUG Processing 490/857 atomic regions from SNP 146758 to 147358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,933 DEBUG Processing 193/706 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,988 DEBUG Processing 182/734 atomic regions from SNP 54481 to 55082 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,042 DEBUG Processing 275/749 atomic regions from SNP 82353 to 82953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,114 DEBUG Processing 491/857 atomic regions from SNP 147058 to 147658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,178 DEBUG Processing 194/706 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,231 DEBUG Processing 183/734 atomic regions from SNP 54782 to 55383 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,287 DEBUG Processing 276/749 atomic regions from SNP 82653 to 83253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,386 DEBUG Processing 492/857 atomic regions from SNP 147358 to 147958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,423 DEBUG Processing 195/706 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,478 DEBUG Processing 184/734 atomic regions from SNP 55083 to 55684 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,532 DEBUG Processing 277/749 atomic regions from SNP 82953 to 83553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,669 DEBUG Processing 196/706 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,680 DEBUG Processing 493/857 atomic regions from SNP 147658 to 148258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,718 DEBUG Processing 185/734 atomic regions from SNP 55384 to 55985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,776 DEBUG Processing 278/749 atomic regions from SNP 83253 to 83853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,917 DEBUG Processing 197/706 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,960 DEBUG Processing 186/734 atomic regions from SNP 55685 to 56286 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,967 DEBUG Processing 494/857 atomic regions from SNP 147958 to 148558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,022 DEBUG Processing 279/749 atomic regions from SNP 83553 to 84153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,177 DEBUG Processing 198/706 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,206 DEBUG Processing 187/734 atomic regions from SNP 55986 to 56587 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,252 DEBUG Processing 495/857 atomic regions from SNP 148258 to 148858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,273 DEBUG Processing 280/749 atomic regions from SNP 83853 to 84453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,431 DEBUG Processing 199/706 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,451 DEBUG Processing 188/734 atomic regions from SNP 56287 to 56888 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,520 DEBUG Processing 281/749 atomic regions from SNP 84153 to 84753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,537 DEBUG Processing 496/857 atomic regions from SNP 148558 to 149158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,680 DEBUG Processing 200/706 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,690 DEBUG Processing 189/734 atomic regions from SNP 56588 to 57189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,768 DEBUG Processing 282/749 atomic regions from SNP 84453 to 85053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,808 DEBUG Processing 497/857 atomic regions from SNP 148858 to 149458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,923 DEBUG Processing 201/706 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,924 DEBUG Processing 190/734 atomic regions from SNP 56889 to 57490 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,019 DEBUG Processing 283/749 atomic regions from SNP 84753 to 85353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,082 DEBUG Processing 498/857 atomic regions from SNP 149158 to 149758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,163 DEBUG Processing 191/734 atomic regions from SNP 57190 to 57791 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,169 DEBUG Processing 202/706 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,271 DEBUG Processing 284/749 atomic regions from SNP 85053 to 85653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,378 DEBUG Processing 499/857 atomic regions from SNP 149458 to 150058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,395 DEBUG Processing 192/734 atomic regions from SNP 57491 to 58092 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,408 DEBUG Processing 203/706 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,521 DEBUG Processing 285/749 atomic regions from SNP 85353 to 85953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,627 DEBUG Processing 193/734 atomic regions from SNP 57792 to 58393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,646 DEBUG Processing 204/706 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,678 DEBUG Processing 500/857 atomic regions from SNP 149758 to 150358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,765 DEBUG Processing 286/749 atomic regions from SNP 85653 to 86253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,865 DEBUG Processing 194/734 atomic regions from SNP 58093 to 58694 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,891 DEBUG Processing 205/706 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,955 DEBUG Processing 501/857 atomic regions from SNP 150058 to 150658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,008 DEBUG Processing 287/749 atomic regions from SNP 85953 to 86553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,103 DEBUG Processing 195/734 atomic regions from SNP 58394 to 58995 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,136 DEBUG Processing 206/706 atomic regions from SNP 61705 to 62305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,234 DEBUG Processing 502/857 atomic regions from SNP 150358 to 150958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,255 DEBUG Processing 288/749 atomic regions from SNP 86253 to 86853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,343 DEBUG Processing 196/734 atomic regions from SNP 58695 to 59296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,379 DEBUG Processing 207/706 atomic regions from SNP 62005 to 62605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,516 DEBUG Processing 289/749 atomic regions from SNP 86553 to 87153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,535 DEBUG Processing 503/857 atomic regions from SNP 150658 to 151258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,590 DEBUG Processing 197/734 atomic regions from SNP 58996 to 59597 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,626 DEBUG Processing 208/706 atomic regions from SNP 62305 to 62905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,764 DEBUG Processing 290/749 atomic regions from SNP 86853 to 87453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,817 DEBUG Processing 504/857 atomic regions from SNP 150958 to 151558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,833 DEBUG Processing 198/734 atomic regions from SNP 59297 to 59898 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,871 DEBUG Processing 209/706 atomic regions from SNP 62605 to 63205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,010 DEBUG Processing 291/749 atomic regions from SNP 87153 to 87753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,073 DEBUG Processing 199/734 atomic regions from SNP 59598 to 60199 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,101 DEBUG Processing 505/857 atomic regions from SNP 151258 to 151858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,117 DEBUG Processing 210/706 atomic regions from SNP 62905 to 63505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,250 DEBUG Processing 292/749 atomic regions from SNP 87453 to 88053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,318 DEBUG Processing 200/734 atomic regions from SNP 59899 to 60500 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,360 DEBUG Processing 506/857 atomic regions from SNP 151558 to 152158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,369 DEBUG Processing 211/706 atomic regions from SNP 63205 to 63805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,489 DEBUG Processing 293/749 atomic regions from SNP 87753 to 88353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,556 DEBUG Processing 201/734 atomic regions from SNP 60200 to 60801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,614 DEBUG Processing 507/857 atomic regions from SNP 151858 to 152458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,619 DEBUG Processing 212/706 atomic regions from SNP 63505 to 64105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,730 DEBUG Processing 294/749 atomic regions from SNP 88053 to 88653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,801 DEBUG Processing 202/734 atomic regions from SNP 60501 to 61102 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,875 DEBUG Processing 213/706 atomic regions from SNP 63805 to 64405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,876 DEBUG Processing 508/857 atomic regions from SNP 152158 to 152758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,967 DEBUG Processing 295/749 atomic regions from SNP 88353 to 88953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,051 DEBUG Processing 203/734 atomic regions from SNP 60802 to 61403 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,128 DEBUG Processing 214/706 atomic regions from SNP 64105 to 64705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,165 DEBUG Processing 509/857 atomic regions from SNP 152458 to 153058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,212 DEBUG Processing 296/749 atomic regions from SNP 88653 to 89253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,293 DEBUG Processing 204/734 atomic regions from SNP 61103 to 61704 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,375 DEBUG Processing 215/706 atomic regions from SNP 64405 to 65005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,449 DEBUG Processing 297/749 atomic regions from SNP 88953 to 89553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,453 DEBUG Processing 510/857 atomic regions from SNP 152758 to 153358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,531 DEBUG Processing 205/734 atomic regions from SNP 61404 to 62005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,623 DEBUG Processing 216/706 atomic regions from SNP 64705 to 65305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,693 DEBUG Processing 298/749 atomic regions from SNP 89253 to 89853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,743 DEBUG Processing 511/857 atomic regions from SNP 153058 to 153658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,778 DEBUG Processing 206/734 atomic regions from SNP 61705 to 62306 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,885 DEBUG Processing 217/706 atomic regions from SNP 65005 to 65605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,932 DEBUG Processing 299/749 atomic regions from SNP 89553 to 90153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,028 DEBUG Processing 207/734 atomic regions from SNP 62006 to 62607 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,035 DEBUG Processing 512/857 atomic regions from SNP 153358 to 153958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,157 DEBUG Processing 218/706 atomic regions from SNP 65305 to 65905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,163 DEBUG Processing 300/749 atomic regions from SNP 89853 to 90453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,262 DEBUG Processing 208/734 atomic regions from SNP 62307 to 62908 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,330 DEBUG Processing 513/857 atomic regions from SNP 153658 to 154258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,414 DEBUG Processing 301/749 atomic regions from SNP 90153 to 90753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,418 DEBUG Processing 219/706 atomic regions from SNP 65605 to 66205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,512 DEBUG Processing 209/734 atomic regions from SNP 62608 to 63209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,623 DEBUG Processing 514/857 atomic regions from SNP 153958 to 154558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,660 DEBUG Processing 302/749 atomic regions from SNP 90453 to 91053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,667 DEBUG Processing 220/706 atomic regions from SNP 65905 to 66505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,744 DEBUG Processing 210/734 atomic regions from SNP 62909 to 63510 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,892 DEBUG Processing 303/749 atomic regions from SNP 90753 to 91353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,901 DEBUG Processing 515/857 atomic regions from SNP 154258 to 154858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,902 DEBUG Processing 221/706 atomic regions from SNP 66205 to 66805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,973 DEBUG Processing 211/734 atomic regions from SNP 63210 to 63811 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,127 DEBUG Processing 304/749 atomic regions from SNP 91053 to 91653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,144 DEBUG Processing 222/706 atomic regions from SNP 66505 to 67105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,175 DEBUG Processing 516/857 atomic regions from SNP 154558 to 155158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,211 DEBUG Processing 212/734 atomic regions from SNP 63511 to 64112 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,365 DEBUG Processing 305/749 atomic regions from SNP 91353 to 91953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,390 DEBUG Processing 223/706 atomic regions from SNP 66805 to 67405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,449 DEBUG Processing 213/734 atomic regions from SNP 63812 to 64413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,449 DEBUG Processing 517/857 atomic regions from SNP 154858 to 155458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,603 DEBUG Processing 306/749 atomic regions from SNP 91653 to 92253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,635 DEBUG Processing 224/706 atomic regions from SNP 67105 to 67705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,695 DEBUG Processing 214/734 atomic regions from SNP 64113 to 64714 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,732 DEBUG Processing 518/857 atomic regions from SNP 155158 to 155758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,844 DEBUG Processing 307/749 atomic regions from SNP 91953 to 92553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,883 DEBUG Processing 225/706 atomic regions from SNP 67405 to 68005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,933 DEBUG Processing 215/734 atomic regions from SNP 64414 to 65015 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,010 DEBUG Processing 519/857 atomic regions from SNP 155458 to 156058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,093 DEBUG Processing 308/749 atomic regions from SNP 92253 to 92853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,141 DEBUG Processing 226/706 atomic regions from SNP 67705 to 68305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,180 DEBUG Processing 216/734 atomic regions from SNP 64715 to 65316 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,294 DEBUG Processing 520/857 atomic regions from SNP 155758 to 156358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,348 DEBUG Processing 309/749 atomic regions from SNP 92553 to 93153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,397 DEBUG Processing 227/706 atomic regions from SNP 68005 to 68605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,419 DEBUG Processing 217/734 atomic regions from SNP 65016 to 65617 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,556 DEBUG Processing 521/857 atomic regions from SNP 156058 to 156658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,592 DEBUG Processing 310/749 atomic regions from SNP 92853 to 93453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,647 DEBUG Processing 228/706 atomic regions from SNP 68305 to 68905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,659 DEBUG Processing 218/734 atomic regions from SNP 65317 to 65918 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,818 DEBUG Processing 522/857 atomic regions from SNP 156358 to 156958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,838 DEBUG Processing 311/749 atomic regions from SNP 93153 to 93753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,906 DEBUG Processing 219/734 atomic regions from SNP 65618 to 66219 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,908 DEBUG Processing 229/706 atomic regions from SNP 68605 to 69205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,074 DEBUG Processing 312/749 atomic regions from SNP 93453 to 94053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,075 DEBUG Processing 523/857 atomic regions from SNP 156658 to 157258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,150 DEBUG Processing 220/734 atomic regions from SNP 65919 to 66520 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,159 DEBUG Processing 230/706 atomic regions from SNP 68905 to 69505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,313 DEBUG Processing 313/749 atomic regions from SNP 93753 to 94353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,340 DEBUG Processing 524/857 atomic regions from SNP 156958 to 157558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,396 DEBUG Processing 221/734 atomic regions from SNP 66220 to 66821 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,425 DEBUG Processing 231/706 atomic regions from SNP 69205 to 69805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,559 DEBUG Processing 314/749 atomic regions from SNP 94053 to 94653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,607 DEBUG Processing 525/857 atomic regions from SNP 157258 to 157858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,642 DEBUG Processing 222/734 atomic regions from SNP 66521 to 67122 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,682 DEBUG Processing 232/706 atomic regions from SNP 69505 to 70105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,799 DEBUG Processing 315/749 atomic regions from SNP 94353 to 94953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,876 DEBUG Processing 526/857 atomic regions from SNP 157558 to 158158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,888 DEBUG Processing 223/734 atomic regions from SNP 66822 to 67423 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,933 DEBUG Processing 233/706 atomic regions from SNP 69805 to 70405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,034 DEBUG Processing 316/749 atomic regions from SNP 94653 to 95253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,124 DEBUG Processing 224/734 atomic regions from SNP 67123 to 67724 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,141 DEBUG Processing 527/857 atomic regions from SNP 157858 to 158458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,183 DEBUG Processing 234/706 atomic regions from SNP 70105 to 70705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,278 DEBUG Processing 317/749 atomic regions from SNP 94953 to 95553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,361 DEBUG Processing 225/734 atomic regions from SNP 67424 to 68025 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,414 DEBUG Processing 528/857 atomic regions from SNP 158158 to 158758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,440 DEBUG Processing 235/706 atomic regions from SNP 70405 to 71005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,520 DEBUG Processing 318/749 atomic regions from SNP 95253 to 95853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,597 DEBUG Processing 226/734 atomic regions from SNP 67725 to 68326 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,673 DEBUG Processing 529/857 atomic regions from SNP 158458 to 159058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,688 DEBUG Processing 236/706 atomic regions from SNP 70705 to 71305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,763 DEBUG Processing 319/749 atomic regions from SNP 95553 to 96153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,834 DEBUG Processing 227/734 atomic regions from SNP 68026 to 68627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,931 DEBUG Processing 530/857 atomic regions from SNP 158758 to 159358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,936 DEBUG Processing 237/706 atomic regions from SNP 71005 to 71605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,008 DEBUG Processing 320/749 atomic regions from SNP 95853 to 96453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,067 DEBUG Processing 228/734 atomic regions from SNP 68327 to 68928 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,189 DEBUG Processing 238/706 atomic regions from SNP 71305 to 71905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,191 DEBUG Processing 531/857 atomic regions from SNP 159058 to 159658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,251 DEBUG Processing 321/749 atomic regions from SNP 96153 to 96753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,297 DEBUG Processing 229/734 atomic regions from SNP 68628 to 69229 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,441 DEBUG Processing 239/706 atomic regions from SNP 71605 to 72205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,458 DEBUG Processing 532/857 atomic regions from SNP 159358 to 159958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,499 DEBUG Processing 322/749 atomic regions from SNP 96453 to 97053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,532 DEBUG Processing 230/734 atomic regions from SNP 68929 to 69530 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,698 DEBUG Processing 240/706 atomic regions from SNP 71905 to 72505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,724 DEBUG Processing 533/857 atomic regions from SNP 159658 to 160258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,743 DEBUG Processing 323/749 atomic regions from SNP 96753 to 97353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,768 DEBUG Processing 231/734 atomic regions from SNP 69230 to 69831 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,957 DEBUG Processing 241/706 atomic regions from SNP 72205 to 72805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,996 DEBUG Processing 534/857 atomic regions from SNP 159958 to 160558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,999 DEBUG Processing 324/749 atomic regions from SNP 97053 to 97653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,014 DEBUG Processing 232/734 atomic regions from SNP 69531 to 70132 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,222 DEBUG Processing 242/706 atomic regions from SNP 72505 to 73105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,260 DEBUG Processing 325/749 atomic regions from SNP 97353 to 97953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,266 DEBUG Processing 233/734 atomic regions from SNP 69832 to 70433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,269 DEBUG Processing 535/857 atomic regions from SNP 160258 to 160858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,475 DEBUG Processing 243/706 atomic regions from SNP 72805 to 73405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,510 DEBUG Processing 234/734 atomic regions from SNP 70133 to 70734 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,528 DEBUG Processing 326/749 atomic regions from SNP 97653 to 98253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,551 DEBUG Processing 536/857 atomic regions from SNP 160558 to 161158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,721 DEBUG Processing 244/706 atomic regions from SNP 73105 to 73705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,756 DEBUG Processing 235/734 atomic regions from SNP 70434 to 71035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,778 DEBUG Processing 327/749 atomic regions from SNP 97953 to 98553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,825 DEBUG Processing 537/857 atomic regions from SNP 160858 to 161458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,972 DEBUG Processing 245/706 atomic regions from SNP 73405 to 74005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,005 DEBUG Processing 236/734 atomic regions from SNP 70735 to 71336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,035 DEBUG Processing 328/749 atomic regions from SNP 98253 to 98853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,098 DEBUG Processing 538/857 atomic regions from SNP 161158 to 161758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,220 DEBUG Processing 246/706 atomic regions from SNP 73705 to 74305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,251 DEBUG Processing 237/734 atomic regions from SNP 71036 to 71637 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,304 DEBUG Processing 329/749 atomic regions from SNP 98553 to 99153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,369 DEBUG Processing 539/857 atomic regions from SNP 161458 to 162058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,469 DEBUG Processing 247/706 atomic regions from SNP 74005 to 74605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,496 DEBUG Processing 238/734 atomic regions from SNP 71337 to 71938 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,582 DEBUG Processing 330/749 atomic regions from SNP 98853 to 99453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,644 DEBUG Processing 540/857 atomic regions from SNP 161758 to 162358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,709 DEBUG Processing 248/706 atomic regions from SNP 74305 to 74905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,732 DEBUG Processing 239/734 atomic regions from SNP 71638 to 72239 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,838 DEBUG Processing 331/749 atomic regions from SNP 99153 to 99753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,906 DEBUG Processing 541/857 atomic regions from SNP 162058 to 162658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,954 DEBUG Processing 249/706 atomic regions from SNP 74605 to 75205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,971 DEBUG Processing 240/734 atomic regions from SNP 71939 to 72540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,101 DEBUG Processing 332/749 atomic regions from SNP 99453 to 100053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,178 DEBUG Processing 542/857 atomic regions from SNP 162358 to 162958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,212 DEBUG Processing 250/706 atomic regions from SNP 74905 to 75505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,218 DEBUG Processing 241/734 atomic regions from SNP 72240 to 72841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,348 DEBUG Processing 333/749 atomic regions from SNP 99753 to 100353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,444 DEBUG Processing 543/857 atomic regions from SNP 162658 to 163258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,463 DEBUG Processing 242/734 atomic regions from SNP 72541 to 73142 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,466 DEBUG Processing 251/706 atomic regions from SNP 75205 to 75805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,591 DEBUG Processing 334/749 atomic regions from SNP 100053 to 100653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,707 DEBUG Processing 544/857 atomic regions from SNP 162958 to 163558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,713 DEBUG Processing 243/734 atomic regions from SNP 72842 to 73443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,723 DEBUG Processing 252/706 atomic regions from SNP 75505 to 76105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,850 DEBUG Processing 335/749 atomic regions from SNP 100353 to 100953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,971 DEBUG Processing 244/734 atomic regions from SNP 73143 to 73744 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,980 DEBUG Processing 545/857 atomic regions from SNP 163258 to 163858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,991 DEBUG Processing 253/706 atomic regions from SNP 75805 to 76405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,101 DEBUG Processing 336/749 atomic regions from SNP 100653 to 101253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,222 DEBUG Processing 245/734 atomic regions from SNP 73444 to 74045 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,247 DEBUG Processing 254/706 atomic regions from SNP 76105 to 76705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,247 DEBUG Processing 546/857 atomic regions from SNP 163558 to 164158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,358 DEBUG Processing 337/749 atomic regions from SNP 100953 to 101553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,477 DEBUG Processing 246/734 atomic regions from SNP 73745 to 74346 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,501 DEBUG Processing 255/706 atomic regions from SNP 76405 to 77005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,520 DEBUG Processing 547/857 atomic regions from SNP 163858 to 164458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,618 DEBUG Processing 338/749 atomic regions from SNP 101253 to 101853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,719 DEBUG Processing 247/734 atomic regions from SNP 74046 to 74647 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,755 DEBUG Processing 256/706 atomic regions from SNP 76705 to 77305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,788 DEBUG Processing 548/857 atomic regions from SNP 164158 to 164758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,883 DEBUG Processing 339/749 atomic regions from SNP 101553 to 102153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,959 DEBUG Processing 248/734 atomic regions from SNP 74347 to 74948 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,001 DEBUG Processing 257/706 atomic regions from SNP 77005 to 77605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,052 DEBUG Processing 549/857 atomic regions from SNP 164458 to 165058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,147 DEBUG Processing 340/749 atomic regions from SNP 101853 to 102453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,198 DEBUG Processing 249/734 atomic regions from SNP 74648 to 75249 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,249 DEBUG Processing 258/706 atomic regions from SNP 77305 to 77905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,324 DEBUG Processing 550/857 atomic regions from SNP 164758 to 165358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,421 DEBUG Processing 341/749 atomic regions from SNP 102153 to 102753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,445 DEBUG Processing 250/734 atomic regions from SNP 74949 to 75550 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,504 DEBUG Processing 259/706 atomic regions from SNP 77605 to 78205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,595 DEBUG Processing 551/857 atomic regions from SNP 165058 to 165658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,685 DEBUG Processing 342/749 atomic regions from SNP 102453 to 103053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,692 DEBUG Processing 251/734 atomic regions from SNP 75250 to 75851 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,753 DEBUG Processing 260/706 atomic regions from SNP 77905 to 78505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,854 DEBUG Processing 552/857 atomic regions from SNP 165358 to 165958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,942 DEBUG Processing 343/749 atomic regions from SNP 102753 to 103353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,943 DEBUG Processing 252/734 atomic regions from SNP 75551 to 76152 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,003 DEBUG Processing 261/706 atomic regions from SNP 78205 to 78805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,111 DEBUG Processing 553/857 atomic regions from SNP 165658 to 166258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,194 DEBUG Processing 253/734 atomic regions from SNP 75852 to 76453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,209 DEBUG Processing 344/749 atomic regions from SNP 103053 to 103653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,255 DEBUG Processing 262/706 atomic regions from SNP 78505 to 79105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,373 DEBUG Processing 554/857 atomic regions from SNP 165958 to 166558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,444 DEBUG Processing 254/734 atomic regions from SNP 76153 to 76753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,489 DEBUG Processing 345/749 atomic regions from SNP 103353 to 103953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,510 DEBUG Processing 263/706 atomic regions from SNP 78805 to 79405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,636 DEBUG Processing 555/857 atomic regions from SNP 166258 to 166858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,678 DEBUG Processing 255/734 atomic regions from SNP 76453 to 77053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,762 DEBUG Processing 346/749 atomic regions from SNP 103653 to 104253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,765 DEBUG Processing 264/706 atomic regions from SNP 79105 to 79705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,897 DEBUG Processing 556/857 atomic regions from SNP 166558 to 167158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,919 DEBUG Processing 256/734 atomic regions from SNP 76753 to 77353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,013 DEBUG Processing 265/706 atomic regions from SNP 79405 to 80005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,024 DEBUG Processing 347/749 atomic regions from SNP 103953 to 104553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,155 DEBUG Processing 557/857 atomic regions from SNP 166858 to 167458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,156 DEBUG Processing 257/734 atomic regions from SNP 77053 to 77653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,253 DEBUG Processing 266/706 atomic regions from SNP 79705 to 80305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,278 DEBUG Processing 348/749 atomic regions from SNP 104253 to 104853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,395 DEBUG Processing 258/734 atomic regions from SNP 77353 to 77953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,412 DEBUG Processing 558/857 atomic regions from SNP 167158 to 167758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,489 DEBUG Processing 267/706 atomic regions from SNP 80005 to 80605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,528 DEBUG Processing 349/749 atomic regions from SNP 104553 to 105153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,639 DEBUG Processing 259/734 atomic regions from SNP 77653 to 78253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,675 DEBUG Processing 559/857 atomic regions from SNP 167458 to 168058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,735 DEBUG Processing 268/706 atomic regions from SNP 80305 to 80905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,775 DEBUG Processing 350/749 atomic regions from SNP 104853 to 105453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,880 DEBUG Processing 260/734 atomic regions from SNP 77953 to 78553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,938 DEBUG Processing 560/857 atomic regions from SNP 167758 to 168358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,983 DEBUG Processing 269/706 atomic regions from SNP 80605 to 81205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,030 DEBUG Processing 351/749 atomic regions from SNP 105153 to 105753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,114 DEBUG Processing 261/734 atomic regions from SNP 78253 to 78853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,200 DEBUG Processing 561/857 atomic regions from SNP 168058 to 168658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,235 DEBUG Processing 270/706 atomic regions from SNP 80905 to 81505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,302 DEBUG Processing 352/749 atomic regions from SNP 105453 to 106053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,353 DEBUG Processing 262/734 atomic regions from SNP 78553 to 79153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,454 DEBUG Processing 562/857 atomic regions from SNP 168358 to 168958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,477 DEBUG Processing 271/706 atomic regions from SNP 81205 to 81805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,540 DEBUG Processing 353/749 atomic regions from SNP 105753 to 106353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,590 DEBUG Processing 263/734 atomic regions from SNP 78853 to 79453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,716 DEBUG Processing 563/857 atomic regions from SNP 168658 to 169258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,727 DEBUG Processing 272/706 atomic regions from SNP 81505 to 82105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,789 DEBUG Processing 354/749 atomic regions from SNP 106053 to 106653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,838 DEBUG Processing 264/734 atomic regions from SNP 79153 to 79753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,975 DEBUG Processing 273/706 atomic regions from SNP 81805 to 82405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,978 DEBUG Processing 564/857 atomic regions from SNP 168958 to 169558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,042 DEBUG Processing 355/749 atomic regions from SNP 106353 to 106953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,082 DEBUG Processing 265/734 atomic regions from SNP 79453 to 80053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,220 DEBUG Processing 274/706 atomic regions from SNP 82105 to 82705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,240 DEBUG Processing 565/857 atomic regions from SNP 169258 to 169858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,291 DEBUG Processing 356/749 atomic regions from SNP 106653 to 107253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,326 DEBUG Processing 266/734 atomic regions from SNP 79753 to 80353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,466 DEBUG Processing 275/706 atomic regions from SNP 82405 to 83005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,499 DEBUG Processing 566/857 atomic regions from SNP 169558 to 170158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,530 DEBUG Processing 357/749 atomic regions from SNP 106953 to 107553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,563 DEBUG Processing 267/734 atomic regions from SNP 80053 to 80653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,736 DEBUG Processing 276/706 atomic regions from SNP 82705 to 83305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,756 DEBUG Processing 567/857 atomic regions from SNP 169858 to 170458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,775 DEBUG Processing 358/749 atomic regions from SNP 107253 to 107853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,801 DEBUG Processing 268/734 atomic regions from SNP 80353 to 80953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,997 DEBUG Processing 277/706 atomic regions from SNP 83005 to 83605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,021 DEBUG Processing 359/749 atomic regions from SNP 107553 to 108153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,023 DEBUG Processing 568/857 atomic regions from SNP 170158 to 170758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,049 DEBUG Processing 269/734 atomic regions from SNP 80653 to 81253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,251 DEBUG Processing 278/706 atomic regions from SNP 83305 to 83905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,272 DEBUG Processing 360/749 atomic regions from SNP 107853 to 108453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,290 DEBUG Processing 569/857 atomic regions from SNP 170458 to 171058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,295 DEBUG Processing 270/734 atomic regions from SNP 80953 to 81553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,507 DEBUG Processing 279/706 atomic regions from SNP 83605 to 84205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,527 DEBUG Processing 361/749 atomic regions from SNP 108153 to 108753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,547 DEBUG Processing 271/734 atomic regions from SNP 81253 to 81853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,562 DEBUG Processing 570/857 atomic regions from SNP 170758 to 171358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,757 DEBUG Processing 280/706 atomic regions from SNP 83905 to 84505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,776 DEBUG Processing 362/749 atomic regions from SNP 108453 to 109053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,788 DEBUG Processing 272/734 atomic regions from SNP 81553 to 82153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,824 DEBUG Processing 571/857 atomic regions from SNP 171058 to 171658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,875 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:50:14,011 DEBUG Processing 281/706 atomic regions from SNP 84205 to 84805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,027 DEBUG Processing 363/749 atomic regions from SNP 108753 to 109353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,038 DEBUG Processing 273/734 atomic regions from SNP 81853 to 82453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,088 DEBUG Processing 572/857 atomic regions from SNP 171358 to 171958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,265 DEBUG Processing 282/706 atomic regions from SNP 84505 to 85105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,276 DEBUG Processing 364/749 atomic regions from SNP 109053 to 109653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,285 DEBUG Processing 274/734 atomic regions from SNP 82153 to 82753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,345 DEBUG Processing 573/857 atomic regions from SNP 171658 to 172258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,513 DEBUG Processing 283/706 atomic regions from SNP 84805 to 85405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,523 DEBUG Processing 365/749 atomic regions from SNP 109353 to 109953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,531 DEBUG Processing 275/734 atomic regions from SNP 82453 to 83053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,604 DEBUG Processing 574/857 atomic regions from SNP 171958 to 172558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,764 DEBUG Processing 284/706 atomic regions from SNP 85105 to 85705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,770 DEBUG Processing 366/749 atomic regions from SNP 109653 to 110253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,773 DEBUG Processing 276/734 atomic regions from SNP 82753 to 83353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,856 DEBUG Processing 575/857 atomic regions from SNP 172258 to 172858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,013 DEBUG Processing 277/734 atomic regions from SNP 83053 to 83653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,013 DEBUG Processing 285/706 atomic regions from SNP 85405 to 86005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,014 DEBUG Processing 367/749 atomic regions from SNP 109953 to 110553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,106 DEBUG Processing 576/857 atomic regions from SNP 172558 to 173158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,251 DEBUG Processing 278/734 atomic regions from SNP 83353 to 83953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,257 DEBUG Processing 368/749 atomic regions from SNP 110253 to 110853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,260 DEBUG Processing 286/706 atomic regions from SNP 85705 to 86305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,352 DEBUG Processing 577/857 atomic regions from SNP 172858 to 173458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,491 DEBUG Processing 279/734 atomic regions from SNP 83653 to 84253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,500 DEBUG Processing 369/749 atomic regions from SNP 110553 to 111153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,505 DEBUG Processing 287/706 atomic regions from SNP 86005 to 86605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,602 DEBUG Processing 578/857 atomic regions from SNP 173158 to 173758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,725 DEBUG Processing 280/734 atomic regions from SNP 83953 to 84553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,738 DEBUG Processing 370/749 atomic regions from SNP 110853 to 111453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,749 DEBUG Processing 288/706 atomic regions from SNP 86305 to 86905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,852 DEBUG Processing 579/857 atomic regions from SNP 173458 to 174058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,956 DEBUG Processing 281/734 atomic regions from SNP 84253 to 84853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,973 DEBUG Processing 371/749 atomic regions from SNP 111153 to 111753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,995 DEBUG Processing 289/706 atomic regions from SNP 86605 to 87205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,107 DEBUG Processing 580/857 atomic regions from SNP 173758 to 174358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,190 DEBUG Processing 282/734 atomic regions from SNP 84553 to 85153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,210 DEBUG Processing 372/749 atomic regions from SNP 111453 to 112053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,242 DEBUG Processing 290/706 atomic regions from SNP 86905 to 87505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,360 DEBUG Processing 581/857 atomic regions from SNP 174058 to 174658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,420 DEBUG Processing 283/734 atomic regions from SNP 84853 to 85453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,444 DEBUG Processing 373/749 atomic regions from SNP 111753 to 112353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,480 DEBUG Processing 291/706 atomic regions from SNP 87205 to 87805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,618 DEBUG Processing 582/857 atomic regions from SNP 174358 to 174958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,655 DEBUG Processing 284/734 atomic regions from SNP 85153 to 85753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,681 DEBUG Processing 374/749 atomic regions from SNP 112053 to 112653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,717 DEBUG Processing 292/706 atomic regions from SNP 87505 to 88105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,901 DEBUG Processing 583/857 atomic regions from SNP 174658 to 175258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,920 DEBUG Processing 285/734 atomic regions from SNP 85453 to 86053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,940 DEBUG Processing 375/749 atomic regions from SNP 112353 to 112953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,971 DEBUG Processing 293/706 atomic regions from SNP 87805 to 88405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,199 DEBUG Processing 584/857 atomic regions from SNP 174958 to 175558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,221 DEBUG Processing 286/734 atomic regions from SNP 85753 to 86353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,239 DEBUG Processing 376/749 atomic regions from SNP 112653 to 113253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,281 DEBUG Processing 294/706 atomic regions from SNP 88105 to 88705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,453 DEBUG Processing 585/857 atomic regions from SNP 175258 to 175858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,462 DEBUG Processing 287/734 atomic regions from SNP 86053 to 86653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,489 DEBUG Processing 377/749 atomic regions from SNP 112953 to 113553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,531 DEBUG Processing 295/706 atomic regions from SNP 88405 to 89005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,698 DEBUG Processing 288/734 atomic regions from SNP 86353 to 86953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,705 DEBUG Processing 586/857 atomic regions from SNP 175558 to 176158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,727 DEBUG Processing 378/749 atomic regions from SNP 113253 to 113853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,770 DEBUG Processing 296/706 atomic regions from SNP 88705 to 89305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,945 DEBUG Processing 289/734 atomic regions from SNP 86653 to 87253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,971 DEBUG Processing 587/857 atomic regions from SNP 175858 to 176458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,976 DEBUG Processing 379/749 atomic regions from SNP 113553 to 114153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,023 DEBUG Processing 297/706 atomic regions from SNP 89005 to 89605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,184 DEBUG Processing 290/734 atomic regions from SNP 86953 to 87553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,220 DEBUG Processing 380/749 atomic regions from SNP 113853 to 114453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,235 DEBUG Processing 588/857 atomic regions from SNP 176158 to 176758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,271 DEBUG Processing 298/706 atomic regions from SNP 89305 to 89905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,424 DEBUG Processing 291/734 atomic regions from SNP 87253 to 87853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,467 DEBUG Processing 381/749 atomic regions from SNP 114153 to 114753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,502 DEBUG Processing 589/857 atomic regions from SNP 176458 to 177058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,521 DEBUG Processing 299/706 atomic regions from SNP 89605 to 90205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,667 DEBUG Processing 292/734 atomic regions from SNP 87553 to 88153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,724 DEBUG Processing 382/749 atomic regions from SNP 114453 to 115053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,812 DEBUG Processing 590/857 atomic regions from SNP 176758 to 177358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,816 DEBUG Processing 300/706 atomic regions from SNP 89905 to 90505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,913 DEBUG Processing 293/734 atomic regions from SNP 87853 to 88453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,964 DEBUG Processing 383/749 atomic regions from SNP 114753 to 115353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,060 DEBUG Processing 301/706 atomic regions from SNP 90205 to 90805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,079 DEBUG Processing 591/857 atomic regions from SNP 177058 to 177658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,152 DEBUG Processing 294/734 atomic regions from SNP 88153 to 88753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,202 DEBUG Processing 384/749 atomic regions from SNP 115053 to 115653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,304 DEBUG Processing 302/706 atomic regions from SNP 90505 to 91105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,343 DEBUG Processing 592/857 atomic regions from SNP 177358 to 177958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,385 DEBUG Processing 295/734 atomic regions from SNP 88453 to 89053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,439 DEBUG Processing 385/749 atomic regions from SNP 115353 to 115953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,551 DEBUG Processing 303/706 atomic regions from SNP 90805 to 91405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,605 DEBUG Processing 593/857 atomic regions from SNP 177658 to 178258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,618 DEBUG Processing 296/734 atomic regions from SNP 88753 to 89353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,675 DEBUG Processing 386/749 atomic regions from SNP 115653 to 116253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,797 DEBUG Processing 304/706 atomic regions from SNP 91105 to 91705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,855 DEBUG Processing 297/734 atomic regions from SNP 89053 to 89653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,867 DEBUG Processing 594/857 atomic regions from SNP 177958 to 178558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,912 DEBUG Processing 387/749 atomic regions from SNP 115953 to 116553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,035 DEBUG Processing 305/706 atomic regions from SNP 91405 to 92005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,087 DEBUG Processing 298/734 atomic regions from SNP 89353 to 89953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,120 DEBUG Processing 595/857 atomic regions from SNP 178258 to 178858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,138 DEBUG Processing 388/749 atomic regions from SNP 116253 to 116853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,280 DEBUG Processing 306/706 atomic regions from SNP 91705 to 92305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,326 DEBUG Processing 299/734 atomic regions from SNP 89653 to 90253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,371 DEBUG Processing 389/749 atomic regions from SNP 116553 to 117153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,375 DEBUG Processing 596/857 atomic regions from SNP 178558 to 179158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,525 DEBUG Processing 307/706 atomic regions from SNP 92005 to 92605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,571 DEBUG Processing 300/734 atomic regions from SNP 89953 to 90553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,613 DEBUG Processing 390/749 atomic regions from SNP 116853 to 117453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,631 DEBUG Processing 597/857 atomic regions from SNP 178858 to 179458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,773 DEBUG Processing 308/706 atomic regions from SNP 92305 to 92905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,815 DEBUG Processing 301/734 atomic regions from SNP 90253 to 90853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,877 DEBUG Processing 391/749 atomic regions from SNP 117153 to 117753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,890 DEBUG Processing 598/857 atomic regions from SNP 179158 to 179758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,017 DEBUG Processing 309/706 atomic regions from SNP 92605 to 93205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,060 DEBUG Processing 302/734 atomic regions from SNP 90553 to 91153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,116 DEBUG Processing 392/749 atomic regions from SNP 117453 to 118053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,147 DEBUG Processing 599/857 atomic regions from SNP 179458 to 180058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,279 DEBUG Processing 310/706 atomic regions from SNP 92905 to 93505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,299 DEBUG Processing 303/734 atomic regions from SNP 90853 to 91453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,365 DEBUG Processing 393/749 atomic regions from SNP 117753 to 118353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,401 DEBUG Processing 600/857 atomic regions from SNP 179758 to 180358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,536 DEBUG Processing 311/706 atomic regions from SNP 93205 to 93805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,542 DEBUG Processing 304/734 atomic regions from SNP 91153 to 91753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,607 DEBUG Processing 394/749 atomic regions from SNP 118053 to 118653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,656 DEBUG Processing 601/857 atomic regions from SNP 180058 to 180658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,773 DEBUG Processing 305/734 atomic regions from SNP 91453 to 92053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,791 DEBUG Processing 312/706 atomic regions from SNP 93505 to 94105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,847 DEBUG Processing 395/749 atomic regions from SNP 118353 to 118953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,911 DEBUG Processing 602/857 atomic regions from SNP 180358 to 180958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,008 DEBUG Processing 306/734 atomic regions from SNP 91753 to 92353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,056 DEBUG Processing 313/706 atomic regions from SNP 93805 to 94405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,090 DEBUG Processing 396/749 atomic regions from SNP 118653 to 119253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,160 DEBUG Processing 603/857 atomic regions from SNP 180658 to 181258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,267 DEBUG Processing 307/734 atomic regions from SNP 92053 to 92653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,319 DEBUG Processing 314/706 atomic regions from SNP 94105 to 94705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,332 DEBUG Processing 397/749 atomic regions from SNP 118953 to 119553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,412 DEBUG Processing 604/857 atomic regions from SNP 180958 to 181558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,496 DEBUG Processing 308/734 atomic regions from SNP 92353 to 92953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,585 DEBUG Processing 315/706 atomic regions from SNP 94405 to 95005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,594 DEBUG Processing 398/749 atomic regions from SNP 119253 to 119853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,664 DEBUG Processing 605/857 atomic regions from SNP 181258 to 181858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,724 DEBUG Processing 309/734 atomic regions from SNP 92653 to 93253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,864 DEBUG Processing 399/749 atomic regions from SNP 119553 to 120153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,867 DEBUG Processing 316/706 atomic regions from SNP 94705 to 95305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,922 DEBUG Processing 606/857 atomic regions from SNP 181558 to 182158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,960 DEBUG Processing 310/734 atomic regions from SNP 92953 to 93553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,106 DEBUG Processing 400/749 atomic regions from SNP 119853 to 120453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,145 DEBUG Processing 317/706 atomic regions from SNP 95005 to 95605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,182 DEBUG Processing 607/857 atomic regions from SNP 181858 to 182458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,195 DEBUG Processing 311/734 atomic regions from SNP 93253 to 93853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,345 DEBUG Processing 401/749 atomic regions from SNP 120153 to 120753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,408 DEBUG Processing 318/706 atomic regions from SNP 95305 to 95905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,437 DEBUG Processing 312/734 atomic regions from SNP 93553 to 94153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,444 DEBUG Processing 608/857 atomic regions from SNP 182158 to 182758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,580 DEBUG Processing 402/749 atomic regions from SNP 120453 to 121053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,667 DEBUG Processing 319/706 atomic regions from SNP 95605 to 96205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,685 DEBUG Processing 313/734 atomic regions from SNP 93853 to 94453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,708 DEBUG Processing 609/857 atomic regions from SNP 182458 to 183058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,829 DEBUG Processing 403/749 atomic regions from SNP 120753 to 121353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,933 DEBUG Processing 320/706 atomic regions from SNP 95905 to 96505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,934 DEBUG Processing 314/734 atomic regions from SNP 94153 to 94753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,970 DEBUG Processing 610/857 atomic regions from SNP 182758 to 183358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,073 DEBUG Processing 404/749 atomic regions from SNP 121053 to 121653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,180 DEBUG Processing 315/734 atomic regions from SNP 94453 to 95053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,196 DEBUG Processing 321/706 atomic regions from SNP 96205 to 96805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,230 DEBUG Processing 611/857 atomic regions from SNP 183058 to 183658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,315 DEBUG Processing 405/749 atomic regions from SNP 121353 to 121953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,417 DEBUG Processing 316/734 atomic regions from SNP 94753 to 95353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,464 DEBUG Processing 322/706 atomic regions from SNP 96505 to 97105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,493 DEBUG Processing 612/857 atomic regions from SNP 183358 to 183958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,564 DEBUG Processing 406/749 atomic regions from SNP 121653 to 122253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,650 DEBUG Processing 317/734 atomic regions from SNP 95053 to 95653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,706 DEBUG Processing 323/706 atomic regions from SNP 96805 to 97405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,756 DEBUG Processing 613/857 atomic regions from SNP 183658 to 184258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,812 DEBUG Processing 407/749 atomic regions from SNP 121953 to 122553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,891 DEBUG Processing 318/734 atomic regions from SNP 95353 to 95953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,947 DEBUG Processing 324/706 atomic regions from SNP 97105 to 97705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,022 DEBUG Processing 614/857 atomic regions from SNP 183958 to 184558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,058 DEBUG Processing 408/749 atomic regions from SNP 122253 to 122853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,136 DEBUG Processing 319/734 atomic regions from SNP 95653 to 96253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,193 DEBUG Processing 325/706 atomic regions from SNP 97405 to 98005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,288 DEBUG Processing 615/857 atomic regions from SNP 184258 to 184858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,307 DEBUG Processing 409/749 atomic regions from SNP 122553 to 123153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,400 DEBUG Processing 320/734 atomic regions from SNP 95953 to 96553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,453 DEBUG Processing 326/706 atomic regions from SNP 97705 to 98305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,543 DEBUG Processing 410/749 atomic regions from SNP 122853 to 123453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,548 DEBUG Processing 616/857 atomic regions from SNP 184558 to 185158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,647 DEBUG Processing 321/734 atomic regions from SNP 96253 to 96853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,703 DEBUG Processing 327/706 atomic regions from SNP 98005 to 98605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,789 DEBUG Processing 411/749 atomic regions from SNP 123153 to 123753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,809 DEBUG Processing 617/857 atomic regions from SNP 184858 to 185458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,895 DEBUG Processing 322/734 atomic regions from SNP 96553 to 97153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,958 DEBUG Processing 328/706 atomic regions from SNP 98305 to 98905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,037 DEBUG Processing 412/749 atomic regions from SNP 123453 to 124053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,080 DEBUG Processing 618/857 atomic regions from SNP 185158 to 185758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,137 DEBUG Processing 323/734 atomic regions from SNP 96853 to 97453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,213 DEBUG Processing 329/706 atomic regions from SNP 98605 to 99205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,288 DEBUG Processing 413/749 atomic regions from SNP 123753 to 124353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,355 DEBUG Processing 619/857 atomic regions from SNP 185458 to 186058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,386 DEBUG Processing 324/734 atomic regions from SNP 97153 to 97753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,468 DEBUG Processing 330/706 atomic regions from SNP 98905 to 99505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,549 DEBUG Processing 414/749 atomic regions from SNP 124053 to 124653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,635 DEBUG Processing 620/857 atomic regions from SNP 185758 to 186358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,639 DEBUG Processing 325/734 atomic regions from SNP 97453 to 98053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,752 DEBUG Processing 331/706 atomic regions from SNP 99205 to 99805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,816 DEBUG Processing 415/749 atomic regions from SNP 124353 to 124953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,907 DEBUG Processing 326/734 atomic regions from SNP 97753 to 98353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,911 DEBUG Processing 621/857 atomic regions from SNP 186058 to 186658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,994 DEBUG Processing 332/706 atomic regions from SNP 99505 to 100105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,061 DEBUG Processing 416/749 atomic regions from SNP 124653 to 125253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,175 DEBUG Processing 327/734 atomic regions from SNP 98053 to 98653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,178 DEBUG Processing 622/857 atomic regions from SNP 186358 to 186958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,240 DEBUG Processing 333/706 atomic regions from SNP 99805 to 100405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,303 DEBUG Processing 417/749 atomic regions from SNP 124953 to 125553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,348 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:50:27,350 DEBUG chr14: Signal quantile: 0.995. signal threshold: 10. Best RMSEA: 0.025 2025-01-31 09:50:27,424 DEBUG Processing 328/734 atomic regions from SNP 98353 to 98953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,449 DEBUG Processing 623/857 atomic regions from SNP 186658 to 187258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,486 DEBUG Processing 334/706 atomic regions from SNP 100105 to 100705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,536 DEBUG Processing 418/749 atomic regions from SNP 125253 to 125853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,676 DEBUG Processing 329/734 atomic regions from SNP 98653 to 99253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,714 DEBUG Processing 624/857 atomic regions from SNP 186958 to 187558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,743 DEBUG Processing 335/706 atomic regions from SNP 100405 to 101005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,780 DEBUG Processing 419/749 atomic regions from SNP 125553 to 126153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,922 DEBUG Processing 330/734 atomic regions from SNP 98953 to 99553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,982 DEBUG Processing 625/857 atomic regions from SNP 187258 to 187858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,997 DEBUG Processing 336/706 atomic regions from SNP 100705 to 101305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,027 DEBUG Processing 420/749 atomic regions from SNP 125853 to 126453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,173 DEBUG Processing 331/734 atomic regions from SNP 99253 to 99853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,246 DEBUG Processing 626/857 atomic regions from SNP 187558 to 188158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,258 DEBUG Processing 337/706 atomic regions from SNP 101005 to 101605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,278 DEBUG Processing 421/749 atomic regions from SNP 126153 to 126753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,433 DEBUG Processing 332/734 atomic regions from SNP 99553 to 100153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,521 DEBUG Processing 627/857 atomic regions from SNP 187858 to 188458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,527 DEBUG Processing 338/706 atomic regions from SNP 101305 to 101905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,538 DEBUG Processing 422/749 atomic regions from SNP 126453 to 127053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,702 DEBUG Processing 333/734 atomic regions from SNP 99853 to 100453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,870 DEBUG Processing 628/857 atomic regions from SNP 188158 to 188758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,875 DEBUG Processing 423/749 atomic regions from SNP 126753 to 127353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,881 DEBUG Processing 339/706 atomic regions from SNP 101605 to 102205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,984 DEBUG Processing 334/734 atomic regions from SNP 100153 to 100753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,164 DEBUG Processing 629/857 atomic regions from SNP 188458 to 189058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,181 DEBUG Processing 340/706 atomic regions from SNP 101905 to 102505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,194 DEBUG Processing 424/749 atomic regions from SNP 127053 to 127653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,277 DEBUG Processing 335/734 atomic regions from SNP 100453 to 101053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,506 DEBUG Processing 630/857 atomic regions from SNP 188758 to 189358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,521 DEBUG Processing 341/706 atomic regions from SNP 102205 to 102805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,578 DEBUG Processing 425/749 atomic regions from SNP 127353 to 127953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,621 DEBUG Processing 336/734 atomic regions from SNP 100753 to 101353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,766 DEBUG Processing 631/857 atomic regions from SNP 189058 to 189658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,775 DEBUG Processing 342/706 atomic regions from SNP 102505 to 103105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,850 DEBUG Processing 426/749 atomic regions from SNP 127653 to 128253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,874 DEBUG Processing 337/734 atomic regions from SNP 101053 to 101653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,032 DEBUG Processing 632/857 atomic regions from SNP 189358 to 189958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,038 DEBUG Processing 343/706 atomic regions from SNP 102805 to 103405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,038 DEBUG chr14 total SNP count: 200492 2025-01-31 09:50:30,038 DEBUG chr14 length: 124902244 2025-01-31 09:50:30,038 DEBUG ----------------------------------------- 2025-01-31 09:50:30,039 INFO Processing SNPs in chr14 2025-01-31 09:50:30,102 DEBUG Processing 427/749 atomic regions from SNP 127953 to 128553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,117 DEBUG Processing 338/734 atomic regions from SNP 101353 to 101953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,289 DEBUG Processing 344/706 atomic regions from SNP 103105 to 103705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,290 DEBUG Processing 633/857 atomic regions from SNP 189658 to 190258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,359 DEBUG Processing 339/734 atomic regions from SNP 101653 to 102253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,363 DEBUG Processing 428/749 atomic regions from SNP 128253 to 128853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,366 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 177), (177, 200492)] 2025-01-31 09:50:30,458 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:30,480 DEBUG Segmenting atomic regions: 2025-01-31 09:50:30,543 DEBUG Processing 345/706 atomic regions from SNP 103405 to 104005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,553 DEBUG Processing 634/857 atomic regions from SNP 189958 to 190558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,571 DEBUG Processing 1/1 atomic regions from SNP 0 to 176 for chr14 (subchromosome 1 of 2). 2025-01-31 09:50:30,582 DEBUG Unique SNPs positions in subchromosome 1: 177 2025-01-31 09:50:30,583 DEBUG Subchromosome time: 0.12501930072903633, subchromosome SNPs: 177 2025-01-31 09:50:30,602 DEBUG Processing 340/734 atomic regions from SNP 101953 to 102553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,635 DEBUG Processing 429/749 atomic regions from SNP 128553 to 129153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,641 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:30,811 DEBUG Processing 346/706 atomic regions from SNP 103705 to 104305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,820 DEBUG Processing 635/857 atomic regions from SNP 190258 to 190858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,854 DEBUG Processing 341/734 atomic regions from SNP 102253 to 102853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,893 DEBUG Processing 430/749 atomic regions from SNP 128853 to 129453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,114 DEBUG Processing 347/706 atomic regions from SNP 104005 to 104605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,123 DEBUG Processing 636/857 atomic regions from SNP 190558 to 191158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,144 DEBUG Processing 342/734 atomic regions from SNP 102553 to 103153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,182 DEBUG Processing 431/749 atomic regions from SNP 129153 to 129753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,403 DEBUG Processing 348/706 atomic regions from SNP 104305 to 104905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,410 DEBUG Processing 343/734 atomic regions from SNP 102853 to 103453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,417 DEBUG Processing 637/857 atomic regions from SNP 190858 to 191458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,467 DEBUG Processing 432/749 atomic regions from SNP 129453 to 130053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,667 DEBUG Processing 344/734 atomic regions from SNP 103153 to 103753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,668 DEBUG Processing 349/706 atomic regions from SNP 104605 to 105205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,690 DEBUG Processing 638/857 atomic regions from SNP 191158 to 191758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,754 DEBUG Processing 433/749 atomic regions from SNP 129753 to 130353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,917 DEBUG Processing 345/734 atomic regions from SNP 103453 to 104053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,935 DEBUG Processing 350/706 atomic regions from SNP 104905 to 105505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,951 DEBUG Processing 639/857 atomic regions from SNP 191458 to 192058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,031 DEBUG Processing 434/749 atomic regions from SNP 130053 to 130653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,161 DEBUG Processing 346/734 atomic regions from SNP 103753 to 104353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,193 DEBUG Processing 351/706 atomic regions from SNP 105205 to 105805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,211 DEBUG Processing 640/857 atomic regions from SNP 191758 to 192358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,295 DEBUG Processing 435/749 atomic regions from SNP 130353 to 130953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,403 DEBUG Processing 347/734 atomic regions from SNP 104053 to 104653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,452 DEBUG Processing 352/706 atomic regions from SNP 105505 to 106105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,471 DEBUG Processing 641/857 atomic regions from SNP 192058 to 192658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,578 DEBUG Processing 436/749 atomic regions from SNP 130653 to 131253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,650 DEBUG Processing 348/734 atomic regions from SNP 104353 to 104953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,707 DEBUG Processing 353/706 atomic regions from SNP 105805 to 106405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,729 DEBUG Processing 642/857 atomic regions from SNP 192358 to 192958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,840 DEBUG Processing 437/749 atomic regions from SNP 130953 to 131553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,911 DEBUG Processing 349/734 atomic regions from SNP 104653 to 105253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,972 DEBUG Processing 354/706 atomic regions from SNP 106105 to 106705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,010 DEBUG Processing 643/857 atomic regions from SNP 192658 to 193258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,127 DEBUG Processing 438/749 atomic regions from SNP 131253 to 131853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,163 DEBUG Processing 350/734 atomic regions from SNP 104953 to 105553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,224 DEBUG Processing 355/706 atomic regions from SNP 106405 to 107005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,303 DEBUG Processing 644/857 atomic regions from SNP 192958 to 193558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,403 DEBUG Processing 439/749 atomic regions from SNP 131553 to 132153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,418 DEBUG Processing 351/734 atomic regions from SNP 105253 to 105853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,475 DEBUG Processing 356/706 atomic regions from SNP 106705 to 107305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,572 DEBUG Processing 645/857 atomic regions from SNP 193258 to 193858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,667 DEBUG Processing 352/734 atomic regions from SNP 105553 to 106153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,679 DEBUG Processing 440/749 atomic regions from SNP 131853 to 132453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,732 DEBUG Processing 357/706 atomic regions from SNP 107005 to 107605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,847 DEBUG Processing 646/857 atomic regions from SNP 193558 to 194158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,919 DEBUG Processing 353/734 atomic regions from SNP 105853 to 106453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,956 DEBUG Processing 441/749 atomic regions from SNP 132153 to 132753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,988 DEBUG Processing 358/706 atomic regions from SNP 107305 to 107905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,120 DEBUG Processing 647/857 atomic regions from SNP 193858 to 194458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,167 DEBUG Processing 354/734 atomic regions from SNP 106153 to 106753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,213 DEBUG Processing 442/749 atomic regions from SNP 132453 to 133053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,245 DEBUG Processing 359/706 atomic regions from SNP 107605 to 108205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,396 DEBUG Processing 648/857 atomic regions from SNP 194158 to 194758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,417 DEBUG Processing 355/734 atomic regions from SNP 106453 to 107053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,468 DEBUG Processing 443/749 atomic regions from SNP 132753 to 133353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,508 DEBUG Processing 360/706 atomic regions from SNP 107905 to 108505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,658 DEBUG Processing 356/734 atomic regions from SNP 106753 to 107353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,674 DEBUG Processing 649/857 atomic regions from SNP 194458 to 195058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,714 DEBUG Processing 444/749 atomic regions from SNP 133053 to 133653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,761 DEBUG Processing 361/706 atomic regions from SNP 108205 to 108805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,896 DEBUG Processing 357/734 atomic regions from SNP 107053 to 107653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,943 DEBUG Processing 650/857 atomic regions from SNP 194758 to 195358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,959 DEBUG Processing 445/749 atomic regions from SNP 133353 to 133953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,016 DEBUG Processing 362/706 atomic regions from SNP 108505 to 109105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,139 DEBUG Processing 358/734 atomic regions from SNP 107353 to 107953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,199 DEBUG Processing 651/857 atomic regions from SNP 195058 to 195658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,203 DEBUG Processing 446/749 atomic regions from SNP 133653 to 134253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,271 DEBUG Processing 363/706 atomic regions from SNP 108805 to 109405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,381 DEBUG Processing 359/734 atomic regions from SNP 107653 to 108253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,452 DEBUG Processing 652/857 atomic regions from SNP 195358 to 195958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,458 DEBUG Processing 447/749 atomic regions from SNP 133953 to 134553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,524 DEBUG Processing 364/706 atomic regions from SNP 109105 to 109705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,627 DEBUG Processing 360/734 atomic regions from SNP 107953 to 108553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,703 DEBUG Processing 653/857 atomic regions from SNP 195658 to 196258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,747 DEBUG Processing 448/749 atomic regions from SNP 134253 to 134853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,779 DEBUG Processing 365/706 atomic regions from SNP 109405 to 110005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,866 DEBUG Processing 361/734 atomic regions from SNP 108253 to 108853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,946 DEBUG Processing 654/857 atomic regions from SNP 195958 to 196558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,024 DEBUG Processing 366/706 atomic regions from SNP 109705 to 110305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,028 DEBUG Processing 449/749 atomic regions from SNP 134553 to 135153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,104 DEBUG Processing 362/734 atomic regions from SNP 108553 to 109153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,219 DEBUG Processing 655/857 atomic regions from SNP 196258 to 196858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,274 DEBUG Processing 367/706 atomic regions from SNP 110005 to 110605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,317 DEBUG Processing 450/749 atomic regions from SNP 134853 to 135453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,350 DEBUG Processing 363/734 atomic regions from SNP 108853 to 109453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,458 DEBUG Processing 656/857 atomic regions from SNP 196558 to 197158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,515 DEBUG Processing 368/706 atomic regions from SNP 110305 to 110905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,592 DEBUG Processing 364/734 atomic regions from SNP 109153 to 109753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,595 DEBUG Processing 451/749 atomic regions from SNP 135153 to 135753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,698 DEBUG Processing 657/857 atomic regions from SNP 196858 to 197458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,757 DEBUG Processing 369/706 atomic regions from SNP 110605 to 111205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,828 DEBUG Processing 365/734 atomic regions from SNP 109453 to 110053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,872 DEBUG Processing 452/749 atomic regions from SNP 135453 to 136053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,940 DEBUG Processing 658/857 atomic regions from SNP 197158 to 197758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,000 DEBUG Processing 370/706 atomic regions from SNP 110905 to 111505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,067 DEBUG Processing 366/734 atomic regions from SNP 109753 to 110353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,136 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:50:37,158 DEBUG Processing 453/749 atomic regions from SNP 135753 to 136353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,216 DEBUG Processing 659/857 atomic regions from SNP 197458 to 198058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,250 DEBUG Processing 371/706 atomic regions from SNP 111205 to 111805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,308 DEBUG Processing 367/734 atomic regions from SNP 110053 to 110653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,441 DEBUG Processing 454/749 atomic regions from SNP 136053 to 136653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,503 DEBUG Processing 372/706 atomic regions from SNP 111505 to 112105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,504 DEBUG Processing 660/857 atomic regions from SNP 197758 to 198358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,558 DEBUG Processing 368/734 atomic regions from SNP 110353 to 110953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,734 DEBUG Processing 455/749 atomic regions from SNP 136353 to 136953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,769 DEBUG Processing 373/706 atomic regions from SNP 111805 to 112405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,798 DEBUG Processing 661/857 atomic regions from SNP 198058 to 198658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,829 DEBUG Processing 369/734 atomic regions from SNP 110653 to 111253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,046 DEBUG Processing 456/749 atomic regions from SNP 136653 to 137253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,059 DEBUG Processing 374/706 atomic regions from SNP 112105 to 112705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,095 DEBUG Processing 662/857 atomic regions from SNP 198358 to 198958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,139 DEBUG Processing 370/734 atomic regions from SNP 110953 to 111553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,305 DEBUG Processing 375/706 atomic regions from SNP 112405 to 113005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,324 DEBUG Processing 457/749 atomic regions from SNP 136953 to 137553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,345 DEBUG Processing 663/857 atomic regions from SNP 198658 to 199258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,386 DEBUG Processing 371/734 atomic regions from SNP 111253 to 111853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,592 DEBUG Processing 376/706 atomic regions from SNP 112705 to 113305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,631 DEBUG Processing 664/857 atomic regions from SNP 198958 to 199558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,636 DEBUG Processing 458/749 atomic regions from SNP 137253 to 137853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,640 DEBUG Processing 372/734 atomic regions from SNP 111553 to 112153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,833 DEBUG Processing 377/706 atomic regions from SNP 113005 to 113605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,887 DEBUG Processing 665/857 atomic regions from SNP 199258 to 199858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,888 DEBUG Processing 373/734 atomic regions from SNP 111853 to 112453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,916 DEBUG Processing 459/749 atomic regions from SNP 137553 to 138153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,075 DEBUG Processing 378/706 atomic regions from SNP 113305 to 113905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,177 DEBUG Processing 374/734 atomic regions from SNP 112153 to 112753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,186 DEBUG Processing 666/857 atomic regions from SNP 199558 to 200158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,255 DEBUG Processing 460/749 atomic regions from SNP 137853 to 138453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,329 DEBUG Processing 379/706 atomic regions from SNP 113605 to 114205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,398 DEBUG Processing 375/734 atomic regions from SNP 112453 to 113053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,426 DEBUG Processing 667/857 atomic regions from SNP 199858 to 200458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,531 DEBUG Processing 461/749 atomic regions from SNP 138153 to 138753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,618 DEBUG Processing 380/706 atomic regions from SNP 113905 to 114505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,688 DEBUG Processing 376/734 atomic regions from SNP 112753 to 113353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,735 DEBUG Processing 668/857 atomic regions from SNP 200158 to 200758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,863 DEBUG Processing 462/749 atomic regions from SNP 138453 to 139053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,972 DEBUG Processing 381/706 atomic regions from SNP 114205 to 114805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,080 DEBUG Processing 377/734 atomic regions from SNP 113053 to 113653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,108 DEBUG Processing 669/857 atomic regions from SNP 200458 to 201058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,144 DEBUG Processing 463/749 atomic regions from SNP 138753 to 139353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,216 DEBUG Processing 382/706 atomic regions from SNP 114505 to 115105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,347 DEBUG Processing 378/734 atomic regions from SNP 113353 to 113953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,374 DEBUG Processing 670/857 atomic regions from SNP 200758 to 201358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,400 DEBUG Processing 464/749 atomic regions from SNP 139053 to 139653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,461 DEBUG Processing 383/706 atomic regions from SNP 114805 to 115405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,628 DEBUG Processing 379/734 atomic regions from SNP 113653 to 114253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,632 DEBUG Processing 671/857 atomic regions from SNP 201058 to 201658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,666 DEBUG Processing 465/749 atomic regions from SNP 139353 to 139953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,745 DEBUG Processing 384/706 atomic regions from SNP 115105 to 115705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,969 DEBUG Processing 672/857 atomic regions from SNP 201358 to 201958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,975 DEBUG Processing 380/734 atomic regions from SNP 113953 to 114553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,993 DEBUG Processing 466/749 atomic regions from SNP 139653 to 140253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,013 DEBUG Processing 385/706 atomic regions from SNP 115405 to 116005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,386 DEBUG Processing 673/857 atomic regions from SNP 201658 to 202258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,388 DEBUG Processing 381/734 atomic regions from SNP 114253 to 114853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,400 DEBUG Processing 467/749 atomic regions from SNP 139953 to 140553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,408 DEBUG Processing 386/706 atomic regions from SNP 115705 to 116305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,737 DEBUG Processing 674/857 atomic regions from SNP 201958 to 202558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,744 DEBUG Processing 382/734 atomic regions from SNP 114553 to 115153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,750 DEBUG Processing 468/749 atomic regions from SNP 140253 to 140853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,763 DEBUG Processing 387/706 atomic regions from SNP 116005 to 116605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,105 DEBUG Processing 675/857 atomic regions from SNP 202258 to 202858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,124 DEBUG Processing 469/749 atomic regions from SNP 140553 to 141153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,142 DEBUG Processing 388/706 atomic regions from SNP 116305 to 116905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,144 DEBUG Processing 383/734 atomic regions from SNP 114853 to 115453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,420 DEBUG Processing 676/857 atomic regions from SNP 202558 to 203158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,442 DEBUG Processing 470/749 atomic regions from SNP 140853 to 141453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,464 DEBUG Processing 389/706 atomic regions from SNP 116605 to 117205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,479 DEBUG Processing 384/734 atomic regions from SNP 115153 to 115753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,697 DEBUG Processing 677/857 atomic regions from SNP 202858 to 203458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,704 DEBUG Processing 471/749 atomic regions from SNP 141153 to 141753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,728 DEBUG Processing 385/734 atomic regions from SNP 115453 to 116053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,729 DEBUG Processing 390/706 atomic regions from SNP 116905 to 117505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,998 DEBUG Processing 472/749 atomic regions from SNP 141453 to 142053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,015 DEBUG Processing 678/857 atomic regions from SNP 203158 to 203758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,024 DEBUG Processing 391/706 atomic regions from SNP 117205 to 117805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,058 DEBUG Processing 386/734 atomic regions from SNP 115753 to 116353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,322 DEBUG Processing 473/749 atomic regions from SNP 141753 to 142353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,346 DEBUG Processing 392/706 atomic regions from SNP 117505 to 118105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,349 DEBUG Processing 679/857 atomic regions from SNP 203458 to 204058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,401 DEBUG Processing 387/734 atomic regions from SNP 116053 to 116653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,556 DEBUG Processing 474/749 atomic regions from SNP 142053 to 142653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,589 DEBUG Processing 393/706 atomic regions from SNP 117805 to 118405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,601 DEBUG Processing 680/857 atomic regions from SNP 203758 to 204358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,662 DEBUG Processing 388/734 atomic regions from SNP 116353 to 116953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,792 DEBUG Processing 475/749 atomic regions from SNP 142353 to 142953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,830 DEBUG Processing 394/706 atomic regions from SNP 118105 to 118705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,847 DEBUG Processing 681/857 atomic regions from SNP 204058 to 204658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,888 DEBUG Processing 389/734 atomic regions from SNP 116653 to 117253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,074 DEBUG Processing 476/749 atomic regions from SNP 142653 to 143253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,107 DEBUG Processing 395/706 atomic regions from SNP 118405 to 119005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,173 DEBUG Processing 682/857 atomic regions from SNP 204358 to 204958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,177 DEBUG Processing 390/734 atomic regions from SNP 116953 to 117553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,339 DEBUG Processing 477/749 atomic regions from SNP 142953 to 143553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,389 DEBUG Processing 396/706 atomic regions from SNP 118705 to 119305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,475 DEBUG Processing 391/734 atomic regions from SNP 117253 to 117853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,506 DEBUG Processing 683/857 atomic regions from SNP 204658 to 205258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,590 DEBUG Processing 478/749 atomic regions from SNP 143253 to 143853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,634 DEBUG Processing 397/706 atomic regions from SNP 119005 to 119605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,764 DEBUG Processing 392/734 atomic regions from SNP 117553 to 118153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,812 DEBUG Processing 684/857 atomic regions from SNP 204958 to 205558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,909 DEBUG Processing 479/749 atomic regions from SNP 143553 to 144153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,947 DEBUG Processing 398/706 atomic regions from SNP 119305 to 119905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,069 DEBUG Processing 393/734 atomic regions from SNP 117853 to 118453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,118 DEBUG Processing 685/857 atomic regions from SNP 205258 to 205858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,175 DEBUG Processing 480/749 atomic regions from SNP 143853 to 144453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,218 DEBUG Processing 399/706 atomic regions from SNP 119605 to 120205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,312 DEBUG Processing 394/734 atomic regions from SNP 118153 to 118753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,384 DEBUG Processing 686/857 atomic regions from SNP 205558 to 206158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,425 DEBUG Processing 481/749 atomic regions from SNP 144153 to 144753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,469 DEBUG Processing 400/706 atomic regions from SNP 119905 to 120505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,538 DEBUG Processing 395/734 atomic regions from SNP 118453 to 119053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,649 DEBUG Processing 687/857 atomic regions from SNP 205858 to 206458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,667 DEBUG Processing 482/749 atomic regions from SNP 144453 to 145053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,713 DEBUG Processing 401/706 atomic regions from SNP 120205 to 120805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,763 DEBUG Processing 396/734 atomic regions from SNP 118753 to 119353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,909 DEBUG Processing 483/749 atomic regions from SNP 144753 to 145353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,923 DEBUG Processing 688/857 atomic regions from SNP 206158 to 206758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,956 DEBUG Processing 402/706 atomic regions from SNP 120505 to 121105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,989 DEBUG Processing 397/734 atomic regions from SNP 119053 to 119653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,143 DEBUG Processing 484/749 atomic regions from SNP 145053 to 145653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,188 DEBUG Processing 689/857 atomic regions from SNP 206458 to 207058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,196 DEBUG Processing 403/706 atomic regions from SNP 120805 to 121405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,214 DEBUG Processing 398/734 atomic regions from SNP 119353 to 119953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,374 DEBUG Processing 485/749 atomic regions from SNP 145353 to 145953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,436 DEBUG Processing 404/706 atomic regions from SNP 121105 to 121705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,447 DEBUG Processing 399/734 atomic regions from SNP 119653 to 120253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,451 DEBUG Processing 690/857 atomic regions from SNP 206758 to 207358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,606 DEBUG Processing 486/749 atomic regions from SNP 145653 to 146253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,673 DEBUG Processing 405/706 atomic regions from SNP 121405 to 122005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,676 DEBUG Processing 400/734 atomic regions from SNP 119953 to 120553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,708 DEBUG Processing 691/857 atomic regions from SNP 207058 to 207658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,841 DEBUG Processing 487/749 atomic regions from SNP 145953 to 146553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,905 DEBUG Processing 401/734 atomic regions from SNP 120253 to 120853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,912 DEBUG Processing 406/706 atomic regions from SNP 121705 to 122305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,982 DEBUG Processing 692/857 atomic regions from SNP 207358 to 207958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,073 DEBUG Processing 488/749 atomic regions from SNP 146253 to 146853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,137 DEBUG Processing 402/734 atomic regions from SNP 120553 to 121153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,149 DEBUG Processing 407/706 atomic regions from SNP 122005 to 122605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,254 DEBUG Processing 693/857 atomic regions from SNP 207658 to 208258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,333 DEBUG Processing 489/749 atomic regions from SNP 146553 to 147153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,371 DEBUG Processing 403/734 atomic regions from SNP 120853 to 121453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,391 DEBUG Processing 408/706 atomic regions from SNP 122305 to 122905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,520 DEBUG Processing 694/857 atomic regions from SNP 207958 to 208558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,587 DEBUG Processing 490/749 atomic regions from SNP 146853 to 147453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,604 DEBUG Processing 404/734 atomic regions from SNP 121153 to 121753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,627 DEBUG Processing 409/706 atomic regions from SNP 122605 to 123205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,766 DEBUG Processing 695/857 atomic regions from SNP 208258 to 208858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,826 DEBUG Processing 491/749 atomic regions from SNP 147153 to 147753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,846 DEBUG Processing 405/734 atomic regions from SNP 121453 to 122053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,872 DEBUG Processing 410/706 atomic regions from SNP 122905 to 123505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,018 DEBUG Processing 696/857 atomic regions from SNP 208558 to 209158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,074 DEBUG Processing 492/749 atomic regions from SNP 147453 to 148053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,099 DEBUG Processing 406/734 atomic regions from SNP 121753 to 122353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,111 DEBUG Processing 411/706 atomic regions from SNP 123205 to 123805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,268 DEBUG Processing 697/857 atomic regions from SNP 208858 to 209458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,318 DEBUG Processing 493/749 atomic regions from SNP 147753 to 148353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,355 DEBUG Processing 407/734 atomic regions from SNP 122053 to 122653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,357 DEBUG Processing 412/706 atomic regions from SNP 123505 to 124105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,521 DEBUG Processing 698/857 atomic regions from SNP 209158 to 209758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,558 DEBUG Processing 494/749 atomic regions from SNP 148053 to 148653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,592 DEBUG Processing 408/734 atomic regions from SNP 122353 to 122953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,602 DEBUG Processing 413/706 atomic regions from SNP 123805 to 124405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,768 DEBUG Processing 699/857 atomic regions from SNP 209458 to 210058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,795 DEBUG Processing 495/749 atomic regions from SNP 148353 to 148953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,830 DEBUG Processing 409/734 atomic regions from SNP 122653 to 123253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,852 DEBUG Processing 414/706 atomic regions from SNP 124105 to 124705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,012 DEBUG Processing 700/857 atomic regions from SNP 209758 to 210358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,019 DEBUG Processing 496/749 atomic regions from SNP 148653 to 149253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,063 DEBUG Processing 410/734 atomic regions from SNP 122953 to 123553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,095 DEBUG Processing 415/706 atomic regions from SNP 124405 to 125005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,240 DEBUG Processing 497/749 atomic regions from SNP 148953 to 149553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,252 DEBUG Processing 701/857 atomic regions from SNP 210058 to 210658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,291 DEBUG Processing 411/734 atomic regions from SNP 123253 to 123853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,338 DEBUG Processing 416/706 atomic regions from SNP 124705 to 125305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,464 DEBUG Processing 498/749 atomic regions from SNP 149253 to 149853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,498 DEBUG Processing 702/857 atomic regions from SNP 210358 to 210958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,519 DEBUG Processing 412/734 atomic regions from SNP 123553 to 124153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,584 DEBUG Processing 417/706 atomic regions from SNP 125005 to 125605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,693 DEBUG Processing 499/749 atomic regions from SNP 149553 to 150153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,739 DEBUG Processing 413/734 atomic regions from SNP 123853 to 124453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,766 DEBUG Processing 703/857 atomic regions from SNP 210658 to 211258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,828 DEBUG Processing 418/706 atomic regions from SNP 125305 to 125905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,920 DEBUG Processing 500/749 atomic regions from SNP 149853 to 150453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,966 DEBUG Processing 414/734 atomic regions from SNP 124153 to 124753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,024 DEBUG Processing 704/857 atomic regions from SNP 210958 to 211558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,069 DEBUG Processing 419/706 atomic regions from SNP 125605 to 126205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,153 DEBUG Processing 501/749 atomic regions from SNP 150153 to 150753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,190 DEBUG Processing 415/734 atomic regions from SNP 124453 to 125053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,264 DEBUG Processing 705/857 atomic regions from SNP 211258 to 211858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,306 DEBUG Processing 420/706 atomic regions from SNP 125905 to 126505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,383 DEBUG Processing 502/749 atomic regions from SNP 150453 to 151053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,418 DEBUG Processing 416/734 atomic regions from SNP 124753 to 125353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,507 DEBUG Processing 706/857 atomic regions from SNP 211558 to 212158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,570 DEBUG Processing 421/706 atomic regions from SNP 126205 to 126805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,613 DEBUG Processing 503/749 atomic regions from SNP 150753 to 151353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,646 DEBUG Processing 417/734 atomic regions from SNP 125053 to 125653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,744 DEBUG Processing 707/857 atomic regions from SNP 211858 to 212458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,813 DEBUG Processing 422/706 atomic regions from SNP 126505 to 127105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,847 DEBUG Processing 504/749 atomic regions from SNP 151053 to 151653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,873 DEBUG Processing 418/734 atomic regions from SNP 125353 to 125953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,981 DEBUG Processing 708/857 atomic regions from SNP 212158 to 212758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,074 DEBUG Processing 423/706 atomic regions from SNP 126805 to 127405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,087 DEBUG Processing 505/749 atomic regions from SNP 151353 to 151953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,104 DEBUG Processing 419/734 atomic regions from SNP 125653 to 126253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,219 DEBUG Processing 709/857 atomic regions from SNP 212458 to 213058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,345 DEBUG Processing 424/706 atomic regions from SNP 127105 to 127705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,350 DEBUG Processing 506/749 atomic regions from SNP 151653 to 152253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,364 DEBUG Processing 420/734 atomic regions from SNP 125953 to 126553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,465 DEBUG Processing 710/857 atomic regions from SNP 212758 to 213358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,594 DEBUG Processing 507/749 atomic regions from SNP 151953 to 152553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,601 DEBUG Processing 421/734 atomic regions from SNP 126253 to 126853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,613 DEBUG Processing 425/706 atomic regions from SNP 127405 to 128005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,719 DEBUG Processing 711/857 atomic regions from SNP 213058 to 213658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,850 DEBUG Processing 508/749 atomic regions from SNP 152253 to 152853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,859 DEBUG Processing 422/734 atomic regions from SNP 126553 to 127153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,889 DEBUG Processing 426/706 atomic regions from SNP 127705 to 128305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,990 DEBUG Processing 712/857 atomic regions from SNP 213358 to 213958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,090 DEBUG Processing 509/749 atomic regions from SNP 152553 to 153153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,097 DEBUG Processing 423/734 atomic regions from SNP 126853 to 127453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,139 DEBUG Processing 427/706 atomic regions from SNP 128005 to 128605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,274 DEBUG Processing 713/857 atomic regions from SNP 213658 to 214258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,319 DEBUG Processing 510/749 atomic regions from SNP 152853 to 153453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,326 DEBUG Processing 424/734 atomic regions from SNP 127153 to 127753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,401 DEBUG Processing 428/706 atomic regions from SNP 128305 to 128905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,554 DEBUG Processing 714/857 atomic regions from SNP 213958 to 214558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,556 DEBUG Processing 511/749 atomic regions from SNP 153153 to 153753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,559 DEBUG Processing 425/734 atomic regions from SNP 127453 to 128053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,744 DEBUG Processing 429/706 atomic regions from SNP 128605 to 129205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,880 DEBUG Processing 512/749 atomic regions from SNP 153453 to 154053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,894 DEBUG Processing 426/734 atomic regions from SNP 127753 to 128353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,939 DEBUG Processing 715/857 atomic regions from SNP 214258 to 214858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,105 DEBUG Processing 430/706 atomic regions from SNP 128905 to 129505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,208 DEBUG Processing 427/734 atomic regions from SNP 128053 to 128653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,211 DEBUG Processing 513/749 atomic regions from SNP 153753 to 154353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,258 DEBUG Processing 716/857 atomic regions from SNP 214558 to 215158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,450 DEBUG Processing 431/706 atomic regions from SNP 129205 to 129805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,499 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:50:53,501 DEBUG chr9: Signal quantile: 0.992. signal threshold: 13. Best RMSEA: 0.013 2025-01-31 09:50:53,563 DEBUG Processing 428/734 atomic regions from SNP 128353 to 128953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,587 DEBUG Processing 514/749 atomic regions from SNP 154053 to 154653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,634 DEBUG Processing 717/857 atomic regions from SNP 214858 to 215458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,703 DEBUG Processing 432/706 atomic regions from SNP 129505 to 130105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,803 DEBUG Processing 429/734 atomic regions from SNP 128653 to 129253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,841 DEBUG Processing 515/749 atomic regions from SNP 154353 to 154953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,907 DEBUG Processing 718/857 atomic regions from SNP 215158 to 215758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,961 DEBUG Processing 433/706 atomic regions from SNP 129805 to 130405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,032 DEBUG Processing 430/734 atomic regions from SNP 128953 to 129553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,105 DEBUG Processing 516/749 atomic regions from SNP 154653 to 155253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,161 DEBUG Processing 719/857 atomic regions from SNP 215458 to 216058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,202 DEBUG Processing 434/706 atomic regions from SNP 130105 to 130705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,259 DEBUG Processing 431/734 atomic regions from SNP 129253 to 129853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,337 DEBUG Processing 517/749 atomic regions from SNP 154953 to 155553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,402 DEBUG Processing 720/857 atomic regions from SNP 215758 to 216358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,444 DEBUG Processing 435/706 atomic regions from SNP 130405 to 131005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,493 DEBUG Processing 432/734 atomic regions from SNP 129553 to 130153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,565 DEBUG Processing 518/749 atomic regions from SNP 155253 to 155853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,646 DEBUG Processing 721/857 atomic regions from SNP 216058 to 216658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,706 DEBUG Processing 436/706 atomic regions from SNP 130705 to 131305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,732 DEBUG Processing 433/734 atomic regions from SNP 129853 to 130453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,796 DEBUG Processing 519/749 atomic regions from SNP 155553 to 156153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,890 DEBUG Processing 722/857 atomic regions from SNP 216358 to 216958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,963 DEBUG Processing 437/706 atomic regions from SNP 131005 to 131605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,976 DEBUG Processing 434/734 atomic regions from SNP 130153 to 130753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,029 DEBUG Processing 520/749 atomic regions from SNP 155853 to 156453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,132 DEBUG Processing 723/857 atomic regions from SNP 216658 to 217258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,212 DEBUG Processing 435/734 atomic regions from SNP 130453 to 131053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,218 DEBUG Processing 438/706 atomic regions from SNP 131305 to 131905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,267 DEBUG Processing 521/749 atomic regions from SNP 156153 to 156753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,367 DEBUG Processing 724/857 atomic regions from SNP 216958 to 217558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,449 DEBUG Processing 436/734 atomic regions from SNP 130753 to 131353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,486 DEBUG Processing 439/706 atomic regions from SNP 131605 to 132205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,510 DEBUG Processing 522/749 atomic regions from SNP 156453 to 157053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,598 DEBUG Processing 725/857 atomic regions from SNP 217258 to 217858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,673 DEBUG Processing 437/734 atomic regions from SNP 131053 to 131653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,679 DEBUG Segmenting atomic regions: 2025-01-31 09:50:55,736 DEBUG Processing 440/706 atomic regions from SNP 131905 to 132505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,758 DEBUG Processing 523/749 atomic regions from SNP 156753 to 157353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,771 DEBUG Processing 1/666 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,838 DEBUG chr9 total SNP count: 218237 2025-01-31 09:50:55,838 DEBUG chr9 length: 124595110 2025-01-31 09:50:55,838 DEBUG ----------------------------------------- 2025-01-31 09:50:55,838 INFO Processing SNPs in chr9 2025-01-31 09:50:55,843 DEBUG Processing 726/857 atomic regions from SNP 217558 to 218158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,900 DEBUG Processing 438/734 atomic regions from SNP 131353 to 131953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,988 DEBUG Processing 2/666 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:55,998 DEBUG Processing 441/706 atomic regions from SNP 132205 to 132805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,998 DEBUG Processing 524/749 atomic regions from SNP 157053 to 157653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,064 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 218237)] 2025-01-31 09:50:56,088 DEBUG Processing 727/857 atomic regions from SNP 217858 to 218458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,121 DEBUG Processing 439/734 atomic regions from SNP 131653 to 132253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,198 DEBUG Processing 3/666 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,219 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:56,233 DEBUG Processing 525/749 atomic regions from SNP 157353 to 157953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,264 DEBUG Processing 442/706 atomic regions from SNP 132505 to 133105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,333 DEBUG Processing 728/857 atomic regions from SNP 218158 to 218758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,346 DEBUG Processing 440/734 atomic regions from SNP 131953 to 132553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,421 DEBUG Processing 4/666 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,474 DEBUG Processing 526/749 atomic regions from SNP 157653 to 158253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,519 DEBUG Processing 443/706 atomic regions from SNP 132805 to 133405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,587 DEBUG Processing 729/857 atomic regions from SNP 218458 to 219058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,606 DEBUG Processing 441/734 atomic regions from SNP 132253 to 132853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,663 DEBUG Processing 5/666 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,711 DEBUG Processing 527/749 atomic regions from SNP 157953 to 158553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,773 DEBUG Processing 444/706 atomic regions from SNP 133105 to 133705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,829 DEBUG Processing 442/734 atomic regions from SNP 132553 to 133153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,853 DEBUG Processing 730/857 atomic regions from SNP 218758 to 219358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,895 DEBUG Processing 6/666 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:56,947 DEBUG Processing 528/749 atomic regions from SNP 158253 to 158853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,034 DEBUG Processing 445/706 atomic regions from SNP 133405 to 134005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,059 DEBUG Processing 443/734 atomic regions from SNP 132853 to 133453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,109 DEBUG Processing 731/857 atomic regions from SNP 219058 to 219658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,119 DEBUG Processing 7/666 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,187 DEBUG Processing 529/749 atomic regions from SNP 158553 to 159153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,274 DEBUG Processing 446/706 atomic regions from SNP 133705 to 134305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,283 DEBUG Processing 444/734 atomic regions from SNP 133153 to 133753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,337 DEBUG Processing 8/666 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,356 DEBUG Processing 732/857 atomic regions from SNP 219358 to 219958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,433 DEBUG Processing 530/749 atomic regions from SNP 158853 to 159453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,516 DEBUG Processing 445/734 atomic regions from SNP 133453 to 134053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,539 DEBUG Processing 447/706 atomic regions from SNP 134005 to 134605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,556 DEBUG Processing 9/666 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,612 DEBUG Processing 733/857 atomic regions from SNP 219658 to 220258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,674 DEBUG Processing 531/749 atomic regions from SNP 159153 to 159753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,748 DEBUG Processing 446/734 atomic regions from SNP 133753 to 134353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,769 DEBUG Processing 10/666 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,789 DEBUG Processing 448/706 atomic regions from SNP 134305 to 134905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,852 DEBUG Processing 734/857 atomic regions from SNP 219958 to 220558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,914 DEBUG Processing 532/749 atomic regions from SNP 159453 to 160053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,981 DEBUG Processing 11/666 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:57,989 DEBUG Processing 447/734 atomic regions from SNP 134053 to 134653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,033 DEBUG Processing 449/706 atomic regions from SNP 134605 to 135205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,108 DEBUG Processing 735/857 atomic regions from SNP 220258 to 220858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,148 DEBUG Processing 533/749 atomic regions from SNP 159753 to 160353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,194 DEBUG Processing 12/666 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,228 DEBUG Processing 448/734 atomic regions from SNP 134353 to 134953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,277 DEBUG Processing 450/706 atomic regions from SNP 134905 to 135505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,363 DEBUG Processing 736/857 atomic regions from SNP 220558 to 221158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,375 DEBUG Processing 534/749 atomic regions from SNP 160053 to 160653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,405 DEBUG Processing 13/666 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,468 DEBUG Processing 449/734 atomic regions from SNP 134653 to 135253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,517 DEBUG Processing 451/706 atomic regions from SNP 135205 to 135805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,599 DEBUG Processing 737/857 atomic regions from SNP 220858 to 221458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,604 DEBUG Processing 535/749 atomic regions from SNP 160353 to 160953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,621 DEBUG Processing 14/666 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,706 DEBUG Processing 450/734 atomic regions from SNP 134953 to 135553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,758 DEBUG Processing 452/706 atomic regions from SNP 135505 to 136105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,839 DEBUG Processing 15/666 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:58,840 DEBUG Processing 536/749 atomic regions from SNP 160653 to 161253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,861 DEBUG Processing 738/857 atomic regions from SNP 221158 to 221758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,933 DEBUG Processing 451/734 atomic regions from SNP 135253 to 135853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,989 DEBUG Processing 453/706 atomic regions from SNP 135805 to 136405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,054 DEBUG Processing 16/666 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,075 DEBUG Processing 537/749 atomic regions from SNP 160953 to 161553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,099 DEBUG Processing 739/857 atomic regions from SNP 221458 to 222058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,170 DEBUG Processing 452/734 atomic regions from SNP 135553 to 136153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,229 DEBUG Processing 454/706 atomic regions from SNP 136105 to 136705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,282 DEBUG Processing 17/666 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,320 DEBUG Processing 538/749 atomic regions from SNP 161253 to 161853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,351 DEBUG Processing 740/857 atomic regions from SNP 221758 to 222358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,411 DEBUG Processing 453/734 atomic regions from SNP 135853 to 136453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,484 DEBUG Processing 455/706 atomic regions from SNP 136405 to 137005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,516 DEBUG Processing 18/666 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,565 DEBUG Processing 539/749 atomic regions from SNP 161553 to 162153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,598 DEBUG Processing 741/857 atomic regions from SNP 222058 to 222658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,661 DEBUG Processing 454/734 atomic regions from SNP 136153 to 136753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,734 DEBUG Processing 456/706 atomic regions from SNP 136705 to 137305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,744 DEBUG Processing 19/666 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:50:59,849 DEBUG Processing 540/749 atomic regions from SNP 161853 to 162453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,884 DEBUG Processing 742/857 atomic regions from SNP 222358 to 222958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,940 DEBUG Processing 455/734 atomic regions from SNP 136453 to 137053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,993 DEBUG Processing 457/706 atomic regions from SNP 137005 to 137605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,994 DEBUG Processing 20/666 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,077 DEBUG Processing 541/749 atomic regions from SNP 162153 to 162753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,118 DEBUG Processing 743/857 atomic regions from SNP 222658 to 223258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,184 DEBUG Processing 456/734 atomic regions from SNP 136753 to 137353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,221 DEBUG Processing 21/666 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,246 DEBUG Processing 458/706 atomic regions from SNP 137305 to 137905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,312 DEBUG Processing 542/749 atomic regions from SNP 162453 to 163053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,350 DEBUG Processing 744/857 atomic regions from SNP 222958 to 223558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,442 DEBUG Processing 22/666 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,443 DEBUG Processing 457/734 atomic regions from SNP 137053 to 137653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,493 DEBUG Processing 459/706 atomic regions from SNP 137605 to 138205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,567 DEBUG Processing 543/749 atomic regions from SNP 162753 to 163353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,596 DEBUG Processing 745/857 atomic regions from SNP 223258 to 223858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,660 DEBUG Processing 23/666 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:00,711 DEBUG Processing 458/734 atomic regions from SNP 137353 to 137953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,736 DEBUG Processing 460/706 atomic regions from SNP 137905 to 138505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,813 DEBUG Processing 544/749 atomic regions from SNP 163053 to 163653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,842 DEBUG Processing 746/857 atomic regions from SNP 223558 to 224158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,881 DEBUG Processing 24/666 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,020 DEBUG Processing 459/734 atomic regions from SNP 137653 to 138253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,025 DEBUG Processing 461/706 atomic regions from SNP 138205 to 138805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,129 DEBUG Processing 545/749 atomic regions from SNP 163353 to 163953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,169 DEBUG Processing 25/666 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,174 DEBUG Processing 747/857 atomic regions from SNP 223858 to 224458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,305 DEBUG Processing 462/706 atomic regions from SNP 138505 to 139105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,348 DEBUG Processing 460/734 atomic regions from SNP 137953 to 138553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,410 DEBUG Processing 546/749 atomic regions from SNP 163653 to 164253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,505 DEBUG Processing 26/666 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,522 DEBUG Processing 748/857 atomic regions from SNP 224158 to 224758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,683 DEBUG Processing 463/706 atomic regions from SNP 138805 to 139405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,737 DEBUG Processing 461/734 atomic regions from SNP 138253 to 138853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,739 DEBUG Processing 547/749 atomic regions from SNP 163953 to 164553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,789 DEBUG Processing 27/666 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:01,831 DEBUG Processing 749/857 atomic regions from SNP 224458 to 225058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,038 DEBUG Processing 464/706 atomic regions from SNP 139105 to 139705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,073 DEBUG Processing 548/749 atomic regions from SNP 164253 to 164853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,082 DEBUG Processing 462/734 atomic regions from SNP 138553 to 139153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,091 DEBUG Processing 28/666 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,166 DEBUG Processing 750/857 atomic regions from SNP 224758 to 225358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,337 DEBUG Processing 465/706 atomic regions from SNP 139405 to 140005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,358 DEBUG Processing 29/666 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,365 DEBUG Processing 549/749 atomic regions from SNP 164553 to 165153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,387 DEBUG Processing 463/734 atomic regions from SNP 138853 to 139453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,502 DEBUG Processing 751/857 atomic regions from SNP 225058 to 225658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,597 DEBUG Processing 30/666 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,603 DEBUG Processing 466/706 atomic regions from SNP 139705 to 140305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,626 DEBUG Processing 550/749 atomic regions from SNP 164853 to 165453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,670 DEBUG Processing 464/734 atomic regions from SNP 139153 to 139753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,756 DEBUG Processing 752/857 atomic regions from SNP 225358 to 225958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,822 DEBUG Processing 31/666 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:02,847 DEBUG Processing 467/706 atomic regions from SNP 140005 to 140605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,870 DEBUG Processing 551/749 atomic regions from SNP 165153 to 165753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,944 DEBUG Processing 465/734 atomic regions from SNP 139453 to 140053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,012 DEBUG Processing 753/857 atomic regions from SNP 225658 to 226258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,043 DEBUG Processing 32/666 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,091 DEBUG Processing 468/706 atomic regions from SNP 140305 to 140905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,112 DEBUG Processing 552/749 atomic regions from SNP 165453 to 166053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,214 DEBUG Processing 466/734 atomic regions from SNP 139753 to 140353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,265 DEBUG Processing 754/857 atomic regions from SNP 225958 to 226558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,269 DEBUG Processing 33/666 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,338 DEBUG Processing 469/706 atomic regions from SNP 140605 to 141205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,350 DEBUG Processing 553/749 atomic regions from SNP 165753 to 166353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,460 DEBUG Processing 467/734 atomic regions from SNP 140053 to 140653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,482 DEBUG Processing 34/666 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,506 DEBUG Processing 755/857 atomic regions from SNP 226258 to 226858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,588 DEBUG Processing 470/706 atomic regions from SNP 140905 to 141505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,593 DEBUG Processing 554/749 atomic regions from SNP 166053 to 166653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,689 DEBUG Processing 468/734 atomic regions from SNP 140353 to 140953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,694 DEBUG Processing 35/666 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,743 DEBUG Processing 756/857 atomic regions from SNP 226558 to 227158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,834 DEBUG Processing 555/749 atomic regions from SNP 166353 to 166953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,841 DEBUG Processing 471/706 atomic regions from SNP 141205 to 141805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,912 DEBUG Processing 36/666 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:03,918 DEBUG Processing 469/734 atomic regions from SNP 140653 to 141253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,986 DEBUG Processing 757/857 atomic regions from SNP 226858 to 227458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,077 DEBUG Processing 556/749 atomic regions from SNP 166653 to 167253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,093 DEBUG Processing 472/706 atomic regions from SNP 141505 to 142105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,140 DEBUG Processing 37/666 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,165 DEBUG Processing 470/734 atomic regions from SNP 140953 to 141553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,243 DEBUG Processing 758/857 atomic regions from SNP 227158 to 227758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,323 DEBUG Processing 557/749 atomic regions from SNP 166953 to 167553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,349 DEBUG Processing 473/706 atomic regions from SNP 141805 to 142405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,390 DEBUG Processing 38/666 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,459 DEBUG Processing 471/734 atomic regions from SNP 141253 to 141853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,571 DEBUG Processing 759/857 atomic regions from SNP 227458 to 228058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,640 DEBUG Processing 558/749 atomic regions from SNP 167253 to 167853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,661 DEBUG Processing 474/706 atomic regions from SNP 142105 to 142705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,683 DEBUG Processing 39/666 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,721 DEBUG Processing 472/734 atomic regions from SNP 141553 to 142153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,829 DEBUG Processing 760/857 atomic regions from SNP 227758 to 228358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,897 DEBUG Processing 559/749 atomic regions from SNP 167553 to 168153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,942 DEBUG Processing 475/706 atomic regions from SNP 142405 to 143005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,962 DEBUG Processing 40/666 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:04,996 DEBUG Processing 473/734 atomic regions from SNP 141853 to 142453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,094 DEBUG Processing 761/857 atomic regions from SNP 228058 to 228658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,144 DEBUG Processing 560/749 atomic regions from SNP 167853 to 168453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,177 DEBUG Processing 41/666 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,188 DEBUG Processing 476/706 atomic regions from SNP 142705 to 143305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,255 DEBUG Processing 474/734 atomic regions from SNP 142153 to 142753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,419 DEBUG Processing 762/857 atomic regions from SNP 228358 to 228958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,459 DEBUG Processing 561/749 atomic regions from SNP 168153 to 168753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,473 DEBUG Processing 42/666 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,515 DEBUG Processing 477/706 atomic regions from SNP 143005 to 143605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,611 DEBUG Processing 475/734 atomic regions from SNP 142453 to 143053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,695 DEBUG Processing 763/857 atomic regions from SNP 228658 to 229258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,701 DEBUG Processing 562/749 atomic regions from SNP 168453 to 169053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,707 DEBUG Processing 43/666 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,764 DEBUG Processing 478/706 atomic regions from SNP 143305 to 143905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,859 DEBUG Processing 476/734 atomic regions from SNP 142753 to 143353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,935 DEBUG Processing 44/666 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:05,941 DEBUG Processing 563/749 atomic regions from SNP 168753 to 169353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,956 DEBUG Processing 764/857 atomic regions from SNP 228958 to 229558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,010 DEBUG Processing 479/706 atomic regions from SNP 143605 to 144205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,083 DEBUG Processing 477/734 atomic regions from SNP 143053 to 143653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,146 DEBUG Processing 45/666 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,177 DEBUG Processing 564/749 atomic regions from SNP 169053 to 169653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,193 DEBUG Processing 765/857 atomic regions from SNP 229258 to 229858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,256 DEBUG Processing 480/706 atomic regions from SNP 143905 to 144505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,312 DEBUG Processing 478/734 atomic regions from SNP 143353 to 143953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,360 DEBUG Processing 46/666 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,410 DEBUG Processing 565/749 atomic regions from SNP 169353 to 169953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,443 DEBUG Processing 766/857 atomic regions from SNP 229558 to 230158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,503 DEBUG Processing 481/706 atomic regions from SNP 144205 to 144805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,543 DEBUG Processing 479/734 atomic regions from SNP 143653 to 144253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,569 DEBUG Processing 47/666 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,642 DEBUG Processing 566/749 atomic regions from SNP 169653 to 170253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,692 DEBUG Processing 767/857 atomic regions from SNP 229858 to 230458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,748 DEBUG Processing 482/706 atomic regions from SNP 144505 to 145105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,774 DEBUG Processing 480/734 atomic regions from SNP 143953 to 144553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,779 DEBUG Processing 48/666 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:06,876 DEBUG Processing 567/749 atomic regions from SNP 169953 to 170553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,942 DEBUG Processing 768/857 atomic regions from SNP 230158 to 230758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,992 DEBUG Processing 49/666 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,003 DEBUG Processing 481/734 atomic regions from SNP 144253 to 144853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,014 DEBUG Processing 483/706 atomic regions from SNP 144805 to 145405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,109 DEBUG Processing 568/749 atomic regions from SNP 170253 to 170853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,212 DEBUG Processing 50/666 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,213 DEBUG Processing 769/857 atomic regions from SNP 230458 to 231058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,235 DEBUG Processing 482/734 atomic regions from SNP 144553 to 145153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,254 DEBUG Processing 484/706 atomic regions from SNP 145105 to 145705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,339 DEBUG Processing 569/749 atomic regions from SNP 170553 to 171153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,434 DEBUG Processing 51/666 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,469 DEBUG Processing 483/734 atomic regions from SNP 144853 to 145453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,485 DEBUG Processing 770/857 atomic regions from SNP 230758 to 231358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,502 DEBUG Processing 485/706 atomic regions from SNP 145405 to 146005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,578 DEBUG Processing 570/749 atomic regions from SNP 170853 to 171453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,663 DEBUG Processing 52/666 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,717 DEBUG Processing 484/734 atomic regions from SNP 145153 to 145753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,747 DEBUG Processing 771/857 atomic regions from SNP 231058 to 231658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,763 DEBUG Processing 486/706 atomic regions from SNP 145705 to 146305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,810 DEBUG Processing 571/749 atomic regions from SNP 171153 to 171753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,871 DEBUG Processing 53/666 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:07,966 DEBUG Processing 485/734 atomic regions from SNP 145453 to 146053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,001 DEBUG Processing 772/857 atomic regions from SNP 231358 to 231958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,026 DEBUG Processing 487/706 atomic regions from SNP 146005 to 146605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,053 DEBUG Processing 572/749 atomic regions from SNP 171453 to 172053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,077 DEBUG Processing 54/666 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,211 DEBUG Processing 486/734 atomic regions from SNP 145753 to 146353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,243 DEBUG Processing 773/857 atomic regions from SNP 231658 to 232258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,277 DEBUG Processing 488/706 atomic regions from SNP 146305 to 146905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,291 DEBUG Processing 55/666 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,296 DEBUG Processing 573/749 atomic regions from SNP 171753 to 172353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,458 DEBUG Processing 487/734 atomic regions from SNP 146053 to 146653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,486 DEBUG Processing 774/857 atomic regions from SNP 231958 to 232558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,503 DEBUG Processing 56/666 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,537 DEBUG Processing 489/706 atomic regions from SNP 146605 to 147205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,540 DEBUG Processing 574/749 atomic regions from SNP 172053 to 172653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,697 DEBUG Processing 488/734 atomic regions from SNP 146353 to 146953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,718 DEBUG Processing 57/666 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,730 DEBUG Processing 775/857 atomic regions from SNP 232258 to 232858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,785 DEBUG Processing 575/749 atomic regions from SNP 172353 to 172953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,792 DEBUG Processing 490/706 atomic regions from SNP 146905 to 147505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,933 DEBUG Processing 489/734 atomic regions from SNP 146653 to 147253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,937 DEBUG Processing 58/666 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:08,971 DEBUG Processing 776/857 atomic regions from SNP 232558 to 233158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,033 DEBUG Processing 576/749 atomic regions from SNP 172653 to 173253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,045 DEBUG Processing 491/706 atomic regions from SNP 147205 to 147805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,159 DEBUG Processing 59/666 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,172 DEBUG Processing 490/734 atomic regions from SNP 146953 to 147553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,213 DEBUG Processing 777/857 atomic regions from SNP 232858 to 233458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,283 DEBUG Processing 577/749 atomic regions from SNP 172953 to 173553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,298 DEBUG Processing 492/706 atomic regions from SNP 147505 to 148105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,383 DEBUG Processing 60/666 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,410 DEBUG Processing 491/734 atomic regions from SNP 147253 to 147853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,457 DEBUG Processing 778/857 atomic regions from SNP 233158 to 233758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,535 DEBUG Processing 578/749 atomic regions from SNP 173253 to 173853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,571 DEBUG Processing 493/706 atomic regions from SNP 147805 to 148405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,604 DEBUG Processing 61/666 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,655 DEBUG Processing 492/734 atomic regions from SNP 147553 to 148153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,702 DEBUG Processing 779/857 atomic regions from SNP 233458 to 234058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,790 DEBUG Processing 579/749 atomic regions from SNP 173553 to 174153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,831 DEBUG Processing 62/666 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:09,842 DEBUG Processing 494/706 atomic regions from SNP 148105 to 148705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,912 DEBUG Processing 493/734 atomic regions from SNP 147853 to 148453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,968 DEBUG Processing 780/857 atomic regions from SNP 233758 to 234358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,043 DEBUG Processing 580/749 atomic regions from SNP 173853 to 174453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,052 DEBUG Processing 63/666 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,114 DEBUG Processing 495/706 atomic regions from SNP 148405 to 149005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,163 DEBUG Processing 494/734 atomic regions from SNP 148153 to 148753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,220 DEBUG Processing 781/857 atomic regions from SNP 234058 to 234658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,303 DEBUG Processing 581/749 atomic regions from SNP 174153 to 174753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,310 DEBUG Processing 64/666 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,403 DEBUG Processing 496/706 atomic regions from SNP 148705 to 149305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,457 DEBUG Processing 495/734 atomic regions from SNP 148453 to 149053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,538 DEBUG Processing 782/857 atomic regions from SNP 234358 to 234958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,593 DEBUG Processing 65/666 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,603 DEBUG Processing 582/749 atomic regions from SNP 174453 to 175053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,691 DEBUG Processing 497/706 atomic regions from SNP 149005 to 149605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,774 DEBUG Processing 496/734 atomic regions from SNP 148753 to 149353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,859 DEBUG Processing 783/857 atomic regions from SNP 234658 to 235258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,921 DEBUG Processing 66/666 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:10,939 DEBUG Processing 583/749 atomic regions from SNP 174753 to 175353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,017 DEBUG Processing 498/706 atomic regions from SNP 149305 to 149905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,099 DEBUG Processing 497/734 atomic regions from SNP 149053 to 149653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,181 DEBUG Processing 784/857 atomic regions from SNP 234958 to 235558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,185 DEBUG Processing 67/666 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,234 DEBUG Processing 584/749 atomic regions from SNP 175053 to 175653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,283 DEBUG Processing 499/706 atomic regions from SNP 149605 to 150205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,343 DEBUG Processing 498/734 atomic regions from SNP 149353 to 149953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,430 DEBUG Processing 68/666 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,442 DEBUG Processing 785/857 atomic regions from SNP 235258 to 235858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,497 DEBUG Processing 585/749 atomic regions from SNP 175353 to 175953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,539 DEBUG Processing 500/706 atomic regions from SNP 149905 to 150505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,584 DEBUG Processing 499/734 atomic regions from SNP 149653 to 150253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,660 DEBUG Processing 69/666 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,697 DEBUG Processing 786/857 atomic regions from SNP 235558 to 236158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,757 DEBUG Processing 586/749 atomic regions from SNP 175653 to 176253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,798 DEBUG Processing 501/706 atomic regions from SNP 150205 to 150805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,827 DEBUG Processing 500/734 atomic regions from SNP 149953 to 150553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,882 DEBUG Processing 70/666 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:11,945 DEBUG Processing 787/857 atomic regions from SNP 235858 to 236458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,006 DEBUG Processing 587/749 atomic regions from SNP 175953 to 176553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,051 DEBUG Processing 502/706 atomic regions from SNP 150505 to 151105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,075 DEBUG Processing 501/734 atomic regions from SNP 150253 to 150853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,112 DEBUG Processing 71/666 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,195 DEBUG Processing 788/857 atomic regions from SNP 236158 to 236758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,266 DEBUG Processing 588/749 atomic regions from SNP 176253 to 176853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,313 DEBUG Processing 503/706 atomic regions from SNP 150805 to 151405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,325 DEBUG Processing 502/734 atomic regions from SNP 150553 to 151153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,360 DEBUG Processing 72/666 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,438 DEBUG Processing 789/857 atomic regions from SNP 236458 to 237058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,521 DEBUG Processing 589/749 atomic regions from SNP 176553 to 177153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,573 DEBUG Processing 504/706 atomic regions from SNP 151105 to 151705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,578 DEBUG Processing 503/734 atomic regions from SNP 150853 to 151453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,596 DEBUG Processing 73/666 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,684 DEBUG Processing 790/857 atomic regions from SNP 236758 to 237358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,768 DEBUG Processing 590/749 atomic regions from SNP 176853 to 177453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,827 DEBUG Processing 504/734 atomic regions from SNP 151153 to 151753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,829 DEBUG Processing 505/706 atomic regions from SNP 151405 to 152005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,846 DEBUG Processing 74/666 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:12,924 DEBUG Processing 791/857 atomic regions from SNP 237058 to 237658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,001 DEBUG Processing 591/749 atomic regions from SNP 177153 to 177753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,068 DEBUG Processing 505/734 atomic regions from SNP 151453 to 152053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,078 DEBUG Processing 506/706 atomic regions from SNP 151705 to 152305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,095 DEBUG Processing 75/666 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,163 DEBUG Processing 792/857 atomic regions from SNP 237358 to 237958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,233 DEBUG Processing 592/749 atomic regions from SNP 177453 to 178053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,309 DEBUG Processing 506/734 atomic regions from SNP 151753 to 152353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,327 DEBUG Processing 507/706 atomic regions from SNP 152005 to 152605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,342 DEBUG Processing 76/666 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,406 DEBUG Processing 793/857 atomic regions from SNP 237658 to 238258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,483 DEBUG Processing 593/749 atomic regions from SNP 177753 to 178353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,561 DEBUG Processing 507/734 atomic regions from SNP 152053 to 152653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,584 DEBUG Processing 77/666 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,589 DEBUG Processing 508/706 atomic regions from SNP 152305 to 152905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,651 DEBUG Processing 794/857 atomic regions from SNP 237958 to 238558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,721 DEBUG Processing 594/749 atomic regions from SNP 178053 to 178653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,807 DEBUG Processing 508/734 atomic regions from SNP 152353 to 152953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,826 DEBUG Processing 78/666 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:13,834 DEBUG Processing 509/706 atomic regions from SNP 152605 to 153205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,894 DEBUG Processing 795/857 atomic regions from SNP 238258 to 238858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,958 DEBUG Processing 595/749 atomic regions from SNP 178353 to 178953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,054 DEBUG Processing 509/734 atomic regions from SNP 152653 to 153253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,070 DEBUG Processing 79/666 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,091 DEBUG Processing 510/706 atomic regions from SNP 152905 to 153505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,143 DEBUG Processing 796/857 atomic regions from SNP 238558 to 239158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,211 DEBUG Processing 596/749 atomic regions from SNP 178653 to 179253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,348 DEBUG Processing 510/734 atomic regions from SNP 152953 to 153553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,364 DEBUG Processing 80/666 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,372 DEBUG Processing 511/706 atomic regions from SNP 153205 to 153805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,476 DEBUG Processing 797/857 atomic regions from SNP 238858 to 239458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,535 DEBUG Processing 597/749 atomic regions from SNP 178953 to 179553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,659 DEBUG Processing 81/666 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,670 DEBUG Processing 511/734 atomic regions from SNP 153253 to 153853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,681 DEBUG Processing 512/706 atomic regions from SNP 153505 to 154105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,744 DEBUG Processing 798/857 atomic regions from SNP 239158 to 239758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,764 DEBUG Processing 598/749 atomic regions from SNP 179253 to 179853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,895 DEBUG Processing 82/666 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:14,915 DEBUG Processing 512/734 atomic regions from SNP 153553 to 154153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,940 DEBUG Processing 513/706 atomic regions from SNP 153805 to 154405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,014 DEBUG Processing 799/857 atomic regions from SNP 239458 to 240058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,018 DEBUG Processing 599/749 atomic regions from SNP 179553 to 180153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,187 DEBUG Processing 83/666 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,199 DEBUG Processing 513/734 atomic regions from SNP 153853 to 154453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,254 DEBUG Processing 514/706 atomic regions from SNP 154105 to 154705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,326 DEBUG Processing 800/857 atomic regions from SNP 239758 to 240358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,330 DEBUG Processing 600/749 atomic regions from SNP 179853 to 180453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,474 DEBUG Processing 84/666 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,492 DEBUG Processing 514/734 atomic regions from SNP 154153 to 154753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,577 DEBUG Processing 515/706 atomic regions from SNP 154405 to 155005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,671 DEBUG Processing 601/749 atomic regions from SNP 180153 to 180753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,678 DEBUG Processing 801/857 atomic regions from SNP 240058 to 240658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,758 DEBUG Processing 85/666 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:15,759 DEBUG Processing 515/734 atomic regions from SNP 154453 to 155053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,828 DEBUG Processing 516/706 atomic regions from SNP 154705 to 155305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,928 DEBUG Processing 602/749 atomic regions from SNP 180453 to 181053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,943 DEBUG Processing 802/857 atomic regions from SNP 240358 to 240958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,006 DEBUG Processing 516/734 atomic regions from SNP 154753 to 155353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,006 DEBUG Processing 86/666 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,080 DEBUG Processing 517/706 atomic regions from SNP 155005 to 155605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,171 DEBUG Processing 603/749 atomic regions from SNP 180753 to 181353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,197 DEBUG Processing 803/857 atomic regions from SNP 240658 to 241258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,235 DEBUG Processing 87/666 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,241 DEBUG Processing 517/734 atomic regions from SNP 155053 to 155653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,320 DEBUG Processing 518/706 atomic regions from SNP 155305 to 155905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,414 DEBUG Processing 604/749 atomic regions from SNP 181053 to 181653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,447 DEBUG Processing 804/857 atomic regions from SNP 240958 to 241558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,462 DEBUG Processing 88/666 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,478 DEBUG Processing 518/734 atomic regions from SNP 155353 to 155953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,562 DEBUG Processing 519/706 atomic regions from SNP 155605 to 156205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,653 DEBUG Processing 605/749 atomic regions from SNP 181353 to 181953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,688 DEBUG Processing 89/666 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:16,697 DEBUG Processing 805/857 atomic regions from SNP 241258 to 241858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,719 DEBUG Processing 519/734 atomic regions from SNP 155653 to 156253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,804 DEBUG Processing 520/706 atomic regions from SNP 155905 to 156505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,959 DEBUG Processing 606/749 atomic regions from SNP 181653 to 182253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,980 DEBUG Processing 90/666 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,020 DEBUG Processing 806/857 atomic regions from SNP 241558 to 242158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,046 DEBUG Processing 520/734 atomic regions from SNP 155953 to 156553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,098 DEBUG Processing 521/706 atomic regions from SNP 156205 to 156805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,209 DEBUG Processing 607/749 atomic regions from SNP 181953 to 182553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,216 DEBUG Processing 91/666 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,312 DEBUG Processing 807/857 atomic regions from SNP 241858 to 242458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,341 DEBUG Processing 521/734 atomic regions from SNP 156253 to 156853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,417 DEBUG Processing 522/706 atomic regions from SNP 156505 to 157105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,454 DEBUG Processing 92/666 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,463 DEBUG Processing 608/749 atomic regions from SNP 182253 to 182853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,553 DEBUG Processing 808/857 atomic regions from SNP 242158 to 242758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,587 DEBUG Processing 522/734 atomic regions from SNP 156553 to 157153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,670 DEBUG Processing 523/706 atomic regions from SNP 156805 to 157405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,681 DEBUG Processing 93/666 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,708 DEBUG Processing 609/749 atomic regions from SNP 182553 to 183153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,791 DEBUG Processing 809/857 atomic regions from SNP 242458 to 243058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,850 DEBUG Processing 523/734 atomic regions from SNP 156853 to 157453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,896 DEBUG Processing 94/666 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:17,907 DEBUG Processing 524/706 atomic regions from SNP 157105 to 157705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,941 DEBUG Processing 610/749 atomic regions from SNP 182853 to 183453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,031 DEBUG Processing 810/857 atomic regions from SNP 242758 to 243358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,106 DEBUG Processing 524/734 atomic regions from SNP 157153 to 157753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,113 DEBUG Processing 95/666 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,156 DEBUG Processing 525/706 atomic regions from SNP 157405 to 158005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,187 DEBUG Processing 611/749 atomic regions from SNP 183153 to 183753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,276 DEBUG Processing 811/857 atomic regions from SNP 243058 to 243658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,335 DEBUG Processing 96/666 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,358 DEBUG Processing 525/734 atomic regions from SNP 157453 to 158053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,403 DEBUG Processing 526/706 atomic regions from SNP 157705 to 158305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,422 DEBUG Processing 612/749 atomic regions from SNP 183453 to 184053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,517 DEBUG Processing 812/857 atomic regions from SNP 243358 to 243958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,556 DEBUG Processing 97/666 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,603 DEBUG Processing 526/734 atomic regions from SNP 157753 to 158353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,655 DEBUG Processing 613/749 atomic regions from SNP 183753 to 184353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,656 DEBUG Processing 527/706 atomic regions from SNP 158005 to 158605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,756 DEBUG Processing 813/857 atomic regions from SNP 243658 to 244258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,769 DEBUG Processing 98/666 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,856 DEBUG Processing 527/734 atomic regions from SNP 158053 to 158653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,892 DEBUG Processing 614/749 atomic regions from SNP 184053 to 184653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,909 DEBUG Processing 528/706 atomic regions from SNP 158305 to 158905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,986 DEBUG Processing 99/666 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:18,997 DEBUG Processing 814/857 atomic regions from SNP 243958 to 244558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,114 DEBUG Processing 528/734 atomic regions from SNP 158353 to 158953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,129 DEBUG Processing 615/749 atomic regions from SNP 184353 to 184953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,153 DEBUG Processing 529/706 atomic regions from SNP 158605 to 159205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,205 DEBUG Processing 100/666 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,241 DEBUG Processing 815/857 atomic regions from SNP 244258 to 244858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,357 DEBUG Processing 529/734 atomic regions from SNP 158653 to 159253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,360 DEBUG Processing 616/749 atomic regions from SNP 184653 to 185253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,398 DEBUG Processing 530/706 atomic regions from SNP 158905 to 159505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,427 DEBUG Processing 101/666 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,493 DEBUG Processing 816/857 atomic regions from SNP 244558 to 245158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,595 DEBUG Processing 617/749 atomic regions from SNP 184953 to 185553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,612 DEBUG Processing 530/734 atomic regions from SNP 158953 to 159553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,638 DEBUG Processing 531/706 atomic regions from SNP 159205 to 159805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,642 DEBUG Processing 102/666 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,734 DEBUG Processing 817/857 atomic regions from SNP 244858 to 245458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,821 DEBUG Processing 618/749 atomic regions from SNP 185253 to 185853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,853 DEBUG Processing 103/666 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:19,854 DEBUG Processing 531/734 atomic regions from SNP 159253 to 159853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,878 DEBUG Processing 532/706 atomic regions from SNP 159505 to 160105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,971 DEBUG Processing 818/857 atomic regions from SNP 245158 to 245758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,052 DEBUG Processing 619/749 atomic regions from SNP 185553 to 186153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,064 DEBUG Processing 104/666 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,095 DEBUG Processing 532/734 atomic regions from SNP 159553 to 160153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,117 DEBUG Processing 533/706 atomic regions from SNP 159805 to 160405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,211 DEBUG Processing 819/857 atomic regions from SNP 245458 to 246058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,275 DEBUG Processing 105/666 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,285 DEBUG Processing 620/749 atomic regions from SNP 185853 to 186453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,346 DEBUG Processing 533/734 atomic regions from SNP 159853 to 160453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,351 DEBUG Processing 534/706 atomic regions from SNP 160105 to 160705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,452 DEBUG Processing 820/857 atomic regions from SNP 245758 to 246358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,492 DEBUG Processing 106/666 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,523 DEBUG Processing 621/749 atomic regions from SNP 186153 to 186753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,581 DEBUG Processing 534/734 atomic regions from SNP 160153 to 160753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,587 DEBUG Processing 535/706 atomic regions from SNP 160405 to 161005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,695 DEBUG Processing 821/857 atomic regions from SNP 246058 to 246658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,732 DEBUG Processing 107/666 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,757 DEBUG Processing 622/749 atomic regions from SNP 186453 to 187053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,808 DEBUG Processing 535/734 atomic regions from SNP 160453 to 161053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,824 DEBUG Processing 536/706 atomic regions from SNP 160705 to 161305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,942 DEBUG Processing 822/857 atomic regions from SNP 246358 to 246958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,978 DEBUG Processing 108/666 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:20,997 DEBUG Processing 623/749 atomic regions from SNP 186753 to 187353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,045 DEBUG Processing 536/734 atomic regions from SNP 160753 to 161353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,065 DEBUG Processing 537/706 atomic regions from SNP 161005 to 161605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,184 DEBUG Processing 823/857 atomic regions from SNP 246658 to 247258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,215 DEBUG Processing 109/666 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,234 DEBUG Processing 624/749 atomic regions from SNP 187053 to 187653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,278 DEBUG Processing 537/734 atomic regions from SNP 161053 to 161653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,305 DEBUG Processing 538/706 atomic regions from SNP 161305 to 161905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,429 DEBUG Processing 824/857 atomic regions from SNP 246958 to 247558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,443 DEBUG Processing 110/666 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,467 DEBUG Processing 625/749 atomic regions from SNP 187353 to 187953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,524 DEBUG Processing 538/734 atomic regions from SNP 161353 to 161953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,561 DEBUG Processing 539/706 atomic regions from SNP 161605 to 162205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,670 DEBUG Processing 111/666 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,675 DEBUG Processing 825/857 atomic regions from SNP 247258 to 247858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,696 DEBUG Processing 626/749 atomic regions from SNP 187653 to 188253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,756 DEBUG Processing 539/734 atomic regions from SNP 161653 to 162253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,802 DEBUG Processing 540/706 atomic regions from SNP 161905 to 162505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,902 DEBUG Processing 112/666 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:21,924 DEBUG Processing 826/857 atomic regions from SNP 247558 to 248158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,930 DEBUG Processing 627/749 atomic regions from SNP 187953 to 188553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,987 DEBUG Processing 540/734 atomic regions from SNP 161953 to 162553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,047 DEBUG Processing 541/706 atomic regions from SNP 162205 to 162805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,125 DEBUG Processing 113/666 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,164 DEBUG Processing 628/749 atomic regions from SNP 188253 to 188853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,172 DEBUG Processing 827/857 atomic regions from SNP 247858 to 248458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,219 DEBUG Processing 541/734 atomic regions from SNP 162253 to 162853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,294 DEBUG Processing 542/706 atomic regions from SNP 162505 to 163105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,351 DEBUG Processing 114/666 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,402 DEBUG Processing 629/749 atomic regions from SNP 188553 to 189153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,417 DEBUG Processing 828/857 atomic regions from SNP 248158 to 248758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,448 DEBUG Processing 542/734 atomic regions from SNP 162553 to 163153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,542 DEBUG Processing 543/706 atomic regions from SNP 162805 to 163405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,570 DEBUG Processing 115/666 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,643 DEBUG Processing 630/749 atomic regions from SNP 188853 to 189453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,657 DEBUG Processing 829/857 atomic regions from SNP 248458 to 249058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,682 DEBUG Processing 543/734 atomic regions from SNP 162853 to 163453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,784 DEBUG Processing 544/706 atomic regions from SNP 163105 to 163705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,791 DEBUG Processing 116/666 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:22,888 DEBUG Processing 631/749 atomic regions from SNP 189153 to 189753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,900 DEBUG Processing 830/857 atomic regions from SNP 248758 to 249358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,922 DEBUG Processing 544/734 atomic regions from SNP 163153 to 163753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,007 DEBUG Processing 117/666 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,023 DEBUG Processing 545/706 atomic regions from SNP 163405 to 164005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,134 DEBUG Processing 632/749 atomic regions from SNP 189453 to 190053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,145 DEBUG Processing 831/857 atomic regions from SNP 249058 to 249658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,166 DEBUG Processing 545/734 atomic regions from SNP 163453 to 164053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,223 DEBUG Processing 118/666 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,262 DEBUG Processing 546/706 atomic regions from SNP 163705 to 164305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,278 DEBUG Segmenting atomic regions: 2025-01-31 09:51:23,378 DEBUG Processing 1/726 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,382 DEBUG Processing 633/749 atomic regions from SNP 189753 to 190353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,386 DEBUG Processing 832/857 atomic regions from SNP 249358 to 249958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,414 DEBUG Processing 546/734 atomic regions from SNP 163753 to 164353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,441 DEBUG Processing 119/666 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,503 DEBUG Processing 547/706 atomic regions from SNP 164005 to 164605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,605 DEBUG Processing 2/726 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,625 DEBUG Processing 634/749 atomic regions from SNP 190053 to 190653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,633 DEBUG Processing 833/857 atomic regions from SNP 249658 to 250258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,662 DEBUG Processing 547/734 atomic regions from SNP 164053 to 164653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,666 DEBUG Processing 120/666 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,745 DEBUG Processing 548/706 atomic regions from SNP 164305 to 164905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,829 DEBUG Processing 3/726 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,862 DEBUG Processing 635/749 atomic regions from SNP 190353 to 190953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,872 DEBUG Processing 834/857 atomic regions from SNP 249958 to 250558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,885 DEBUG Processing 121/666 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:23,900 DEBUG Processing 548/734 atomic regions from SNP 164353 to 164953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,992 DEBUG Processing 549/706 atomic regions from SNP 164605 to 165205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,053 DEBUG Processing 4/726 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,100 DEBUG Processing 636/749 atomic regions from SNP 190653 to 191253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,106 DEBUG Processing 122/666 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,114 DEBUG Processing 835/857 atomic regions from SNP 250258 to 250858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,140 DEBUG Processing 549/734 atomic regions from SNP 164653 to 165253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,244 DEBUG Processing 550/706 atomic regions from SNP 164905 to 165505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,285 DEBUG Processing 5/726 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,328 DEBUG Processing 123/666 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,337 DEBUG Processing 637/749 atomic regions from SNP 190953 to 191553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,360 DEBUG Processing 836/857 atomic regions from SNP 250558 to 251158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,382 DEBUG Processing 550/734 atomic regions from SNP 164953 to 165553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,502 DEBUG Processing 551/706 atomic regions from SNP 165205 to 165805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,516 DEBUG Processing 6/726 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,551 DEBUG Processing 124/666 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,578 DEBUG Processing 638/749 atomic regions from SNP 191253 to 191853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,608 DEBUG Processing 837/857 atomic regions from SNP 250858 to 251458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,616 DEBUG Processing 551/734 atomic regions from SNP 165253 to 165853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,742 DEBUG Processing 7/726 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,755 DEBUG Processing 552/706 atomic regions from SNP 165505 to 166105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,774 DEBUG Processing 125/666 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:24,822 DEBUG Processing 639/749 atomic regions from SNP 191553 to 192153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,857 DEBUG Processing 552/734 atomic regions from SNP 165553 to 166153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,860 DEBUG Processing 838/857 atomic regions from SNP 251158 to 251758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,961 DEBUG Processing 8/726 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,993 DEBUG Processing 126/666 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,005 DEBUG Processing 553/706 atomic regions from SNP 165805 to 166405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,072 DEBUG Processing 640/749 atomic regions from SNP 191853 to 192453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,105 DEBUG Processing 553/734 atomic regions from SNP 165853 to 166453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,113 DEBUG Processing 839/857 atomic regions from SNP 251458 to 252058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,185 DEBUG Processing 9/726 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,210 DEBUG Processing 127/666 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,257 DEBUG Processing 554/706 atomic regions from SNP 166105 to 166705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,331 DEBUG Processing 641/749 atomic regions from SNP 192153 to 192753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,358 DEBUG Processing 554/734 atomic regions from SNP 166153 to 166753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,366 DEBUG Processing 840/857 atomic regions from SNP 251758 to 252358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,411 DEBUG Processing 10/726 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,426 DEBUG Processing 128/666 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,532 DEBUG Processing 555/706 atomic regions from SNP 166405 to 167005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,584 DEBUG Processing 642/749 atomic regions from SNP 192453 to 193053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,606 DEBUG Processing 555/734 atomic regions from SNP 166453 to 167053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,627 DEBUG Processing 841/857 atomic regions from SNP 252058 to 252658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,636 DEBUG Processing 11/726 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,643 DEBUG Processing 129/666 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,815 DEBUG Processing 556/706 atomic regions from SNP 166705 to 167305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,835 DEBUG Processing 643/749 atomic regions from SNP 192753 to 193353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,855 DEBUG Processing 556/734 atomic regions from SNP 166753 to 167353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,860 DEBUG Processing 130/666 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:25,863 DEBUG Processing 12/726 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,877 DEBUG Processing 842/857 atomic regions from SNP 252358 to 252958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,079 DEBUG Processing 557/706 atomic regions from SNP 167005 to 167605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,084 DEBUG Processing 131/666 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,087 DEBUG Processing 644/749 atomic regions from SNP 193053 to 193653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,094 DEBUG Processing 13/726 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,106 DEBUG Processing 557/734 atomic regions from SNP 167053 to 167653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,124 DEBUG Processing 843/857 atomic regions from SNP 252658 to 253258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,325 DEBUG Processing 132/666 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,326 DEBUG Processing 14/726 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,338 DEBUG Processing 558/706 atomic regions from SNP 167305 to 167905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,341 DEBUG Processing 645/749 atomic regions from SNP 193353 to 193953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,356 DEBUG Processing 558/734 atomic regions from SNP 167353 to 167953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,375 DEBUG Processing 844/857 atomic regions from SNP 252958 to 253558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,555 DEBUG Processing 15/726 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,569 DEBUG Processing 133/666 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,590 DEBUG Processing 559/706 atomic regions from SNP 167605 to 168205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,590 DEBUG Processing 646/749 atomic regions from SNP 193653 to 194253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,607 DEBUG Processing 559/734 atomic regions from SNP 167653 to 168253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,623 DEBUG Processing 845/857 atomic regions from SNP 253258 to 253858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,776 DEBUG Processing 16/726 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,793 DEBUG Processing 134/666 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:26,833 DEBUG Processing 647/749 atomic regions from SNP 193953 to 194553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,837 DEBUG Processing 560/706 atomic regions from SNP 167905 to 168505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,846 DEBUG Processing 560/734 atomic regions from SNP 167953 to 168553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,870 DEBUG Processing 846/857 atomic regions from SNP 253558 to 254158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,001 DEBUG Processing 17/726 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,016 DEBUG Processing 135/666 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,072 DEBUG Processing 648/749 atomic regions from SNP 194253 to 194853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,085 DEBUG Processing 561/734 atomic regions from SNP 168253 to 168853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,085 DEBUG Processing 561/706 atomic regions from SNP 168205 to 168805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,112 DEBUG Processing 847/857 atomic regions from SNP 253858 to 254458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,229 DEBUG Processing 18/726 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,270 DEBUG Processing 136/666 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,318 DEBUG Processing 649/749 atomic regions from SNP 194553 to 195153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,326 DEBUG Processing 562/734 atomic regions from SNP 168553 to 169153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,332 DEBUG Processing 562/706 atomic regions from SNP 168505 to 169105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,355 DEBUG Processing 848/857 atomic regions from SNP 254158 to 254758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,467 DEBUG Processing 19/726 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,527 DEBUG Processing 137/666 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,571 DEBUG Processing 650/749 atomic regions from SNP 194853 to 195453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,575 DEBUG Processing 563/734 atomic regions from SNP 168853 to 169453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,603 DEBUG Processing 849/857 atomic regions from SNP 254458 to 255058 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,605 DEBUG Processing 563/706 atomic regions from SNP 168805 to 169405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,693 DEBUG Processing 20/726 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,751 DEBUG Processing 138/666 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:27,813 DEBUG Processing 651/749 atomic regions from SNP 195153 to 195753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,816 DEBUG Processing 564/734 atomic regions from SNP 169153 to 169753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,842 DEBUG Processing 850/857 atomic regions from SNP 254758 to 255358 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,867 DEBUG Processing 564/706 atomic regions from SNP 169105 to 169705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,919 DEBUG Processing 21/726 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,991 DEBUG Processing 139/666 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,060 DEBUG Processing 652/749 atomic regions from SNP 195453 to 196053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,061 DEBUG Processing 565/734 atomic regions from SNP 169453 to 170053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,090 DEBUG Processing 851/857 atomic regions from SNP 255058 to 255658 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,124 DEBUG Processing 565/706 atomic regions from SNP 169405 to 170005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,152 DEBUG Processing 22/726 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,234 DEBUG Processing 140/666 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,317 DEBUG Processing 566/734 atomic regions from SNP 169753 to 170353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,320 DEBUG Processing 653/749 atomic regions from SNP 195753 to 196353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,344 DEBUG Processing 852/857 atomic regions from SNP 255358 to 255958 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,390 DEBUG Processing 23/726 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,390 DEBUG Processing 566/706 atomic regions from SNP 169705 to 170305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,482 DEBUG Processing 141/666 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,563 DEBUG Processing 567/734 atomic regions from SNP 170053 to 170653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,565 DEBUG Processing 654/749 atomic regions from SNP 196053 to 196653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,596 DEBUG Processing 853/857 atomic regions from SNP 255658 to 256258 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,625 DEBUG Processing 24/726 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,642 DEBUG Processing 567/706 atomic regions from SNP 170005 to 170605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,727 DEBUG Processing 142/666 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:28,808 DEBUG Processing 568/734 atomic regions from SNP 170353 to 170953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,814 DEBUG Processing 655/749 atomic regions from SNP 196353 to 196953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,853 DEBUG Processing 854/857 atomic regions from SNP 255958 to 256558 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,868 DEBUG Processing 25/726 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,897 DEBUG Processing 568/706 atomic regions from SNP 170305 to 170905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,962 DEBUG Processing 143/666 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,052 DEBUG Processing 569/734 atomic regions from SNP 170653 to 171253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,059 DEBUG Processing 656/749 atomic regions from SNP 196653 to 197253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,102 DEBUG Processing 855/857 atomic regions from SNP 256258 to 256858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,102 DEBUG Processing 26/726 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,146 DEBUG Processing 569/706 atomic regions from SNP 170605 to 171205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,184 DEBUG Processing 144/666 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,292 DEBUG Processing 570/734 atomic regions from SNP 170953 to 171553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,302 DEBUG Processing 657/749 atomic regions from SNP 196953 to 197553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,332 DEBUG Processing 27/726 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,348 DEBUG Processing 856/857 atomic regions from SNP 256558 to 257158 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,400 DEBUG Processing 570/706 atomic regions from SNP 170905 to 171505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,428 DEBUG Processing 145/666 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,542 DEBUG Processing 571/734 atomic regions from SNP 171253 to 171853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,556 DEBUG Processing 658/749 atomic regions from SNP 197253 to 197853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,584 DEBUG Processing 28/726 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,596 DEBUG Processing 857/857 atomic regions from SNP 256858 to 257458 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,664 DEBUG Processing 571/706 atomic regions from SNP 171205 to 171805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,681 DEBUG Processing 146/666 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,733 DEBUG Unique SNPs positions in subchromosome 1: 257459 2025-01-31 09:51:29,791 DEBUG Processing 572/734 atomic regions from SNP 171553 to 172153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,811 DEBUG Processing 29/726 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,819 DEBUG Processing 659/749 atomic regions from SNP 197553 to 198153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,919 DEBUG Processing 147/666 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:29,925 DEBUG Processing 572/706 atomic regions from SNP 171505 to 172105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,030 DEBUG Processing 30/726 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,033 DEBUG Processing 573/734 atomic regions from SNP 171853 to 172453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,063 DEBUG Processing 660/749 atomic regions from SNP 197853 to 198453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,150 DEBUG Processing 148/666 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,174 DEBUG Processing 573/706 atomic regions from SNP 171805 to 172405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,253 DEBUG Processing 31/726 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,273 DEBUG Processing 574/734 atomic regions from SNP 172153 to 172753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,305 DEBUG Processing 661/749 atomic regions from SNP 198153 to 198753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,375 DEBUG Processing 149/666 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,418 DEBUG Processing 574/706 atomic regions from SNP 172105 to 172705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,477 DEBUG Processing 32/726 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,513 DEBUG Processing 575/734 atomic regions from SNP 172453 to 173053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,550 DEBUG Processing 662/749 atomic regions from SNP 198453 to 199053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,596 DEBUG Processing 150/666 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,663 DEBUG Processing 575/706 atomic regions from SNP 172405 to 173005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,698 DEBUG Processing 33/726 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,751 DEBUG Processing 576/734 atomic regions from SNP 172753 to 173353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,792 DEBUG Processing 663/749 atomic regions from SNP 198753 to 199353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,817 DEBUG Processing 151/666 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:30,907 DEBUG Processing 576/706 atomic regions from SNP 172705 to 173305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,922 DEBUG Processing 34/726 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,984 DEBUG Processing 577/734 atomic regions from SNP 173053 to 173653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,029 DEBUG Processing 664/749 atomic regions from SNP 199053 to 199653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,033 DEBUG Processing 152/666 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,148 DEBUG Processing 35/726 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,153 DEBUG Processing 577/706 atomic regions from SNP 173005 to 173605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,218 DEBUG Processing 578/734 atomic regions from SNP 173353 to 173953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,250 DEBUG Processing 153/666 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,269 DEBUG Processing 665/749 atomic regions from SNP 199353 to 199953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,379 DEBUG Processing 36/726 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,405 DEBUG Processing 578/706 atomic regions from SNP 173305 to 173905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,454 DEBUG Processing 579/734 atomic regions from SNP 173653 to 174253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,470 DEBUG Processing 154/666 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,505 DEBUG Processing 666/749 atomic regions from SNP 199653 to 200253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,614 DEBUG Processing 37/726 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,659 DEBUG Processing 579/706 atomic regions from SNP 173605 to 174205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,693 DEBUG Processing 155/666 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,698 DEBUG Processing 580/734 atomic regions from SNP 173953 to 174553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,746 DEBUG Processing 667/749 atomic regions from SNP 199953 to 200553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,845 DEBUG Processing 38/726 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,909 DEBUG Processing 580/706 atomic regions from SNP 173905 to 174505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,919 DEBUG Processing 156/666 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:31,945 DEBUG Processing 581/734 atomic regions from SNP 174253 to 174853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,994 DEBUG Processing 668/749 atomic regions from SNP 200253 to 200853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,080 DEBUG Processing 39/726 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,147 DEBUG Processing 157/666 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,161 DEBUG Processing 581/706 atomic regions from SNP 174205 to 174805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,191 DEBUG Processing 582/734 atomic regions from SNP 174553 to 175153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,239 DEBUG Processing 669/749 atomic regions from SNP 200553 to 201153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,305 DEBUG Processing 40/726 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,371 DEBUG Processing 158/666 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,415 DEBUG Processing 582/706 atomic regions from SNP 174505 to 175105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,436 DEBUG Processing 583/734 atomic regions from SNP 174853 to 175453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,506 DEBUG Processing 670/749 atomic regions from SNP 200853 to 201453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,529 DEBUG Processing 41/726 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,598 DEBUG Processing 159/666 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,665 DEBUG Processing 583/706 atomic regions from SNP 174805 to 175405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,703 DEBUG Processing 584/734 atomic regions from SNP 175153 to 175753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,757 DEBUG Processing 671/749 atomic regions from SNP 201153 to 201753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,760 DEBUG Processing 42/726 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,824 DEBUG Processing 160/666 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:32,923 DEBUG Processing 584/706 atomic regions from SNP 175105 to 175705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,948 DEBUG Processing 585/734 atomic regions from SNP 175453 to 176053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,984 DEBUG Processing 43/726 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,005 DEBUG Processing 672/749 atomic regions from SNP 201453 to 202053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,061 DEBUG Processing 161/666 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,185 DEBUG Processing 586/734 atomic regions from SNP 175753 to 176353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,187 DEBUG Processing 585/706 atomic regions from SNP 175405 to 176005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,215 DEBUG Processing 44/726 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,255 DEBUG Processing 673/749 atomic regions from SNP 201753 to 202353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,311 DEBUG Processing 162/666 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,427 DEBUG Processing 587/734 atomic regions from SNP 176053 to 176653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,440 DEBUG Processing 45/726 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,447 DEBUG Processing 586/706 atomic regions from SNP 175705 to 176305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,523 DEBUG Processing 674/749 atomic regions from SNP 202053 to 202653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,550 DEBUG Processing 163/666 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,671 DEBUG Processing 46/726 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,710 DEBUG Processing 588/734 atomic regions from SNP 176353 to 176953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,713 DEBUG Processing 587/706 atomic regions from SNP 176005 to 176605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,769 DEBUG Processing 164/666 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:33,787 DEBUG Processing 675/749 atomic regions from SNP 202353 to 202953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,899 DEBUG Processing 47/726 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,979 DEBUG Processing 588/706 atomic regions from SNP 176305 to 176905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,987 DEBUG Processing 589/734 atomic regions from SNP 176653 to 177253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,991 DEBUG Processing 165/666 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,040 DEBUG Processing 676/749 atomic regions from SNP 202653 to 203253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,141 DEBUG Processing 48/726 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,214 DEBUG Processing 166/666 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,236 DEBUG Processing 589/706 atomic regions from SNP 176605 to 177205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,264 DEBUG Processing 590/734 atomic regions from SNP 176953 to 177553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,294 DEBUG Processing 677/749 atomic regions from SNP 202953 to 203553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,382 DEBUG Processing 49/726 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,445 DEBUG Processing 167/666 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,520 DEBUG Processing 590/706 atomic regions from SNP 176905 to 177505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,534 DEBUG Processing 591/734 atomic regions from SNP 177253 to 177853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,543 DEBUG Processing 678/749 atomic regions from SNP 203253 to 203853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,649 DEBUG Processing 50/726 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,685 DEBUG Processing 168/666 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:34,795 DEBUG Processing 679/749 atomic regions from SNP 203553 to 204153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,806 DEBUG Processing 591/706 atomic regions from SNP 177205 to 177805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,817 DEBUG Processing 592/734 atomic regions from SNP 177553 to 178153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,930 DEBUG Processing 51/726 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,945 DEBUG Processing 169/666 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,045 DEBUG Processing 680/749 atomic regions from SNP 203853 to 204453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,087 DEBUG Processing 593/734 atomic regions from SNP 177853 to 178453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,087 DEBUG Processing 592/706 atomic regions from SNP 177505 to 178105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,176 DEBUG Processing 52/726 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,181 DEBUG Processing 170/666 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,297 DEBUG Processing 681/749 atomic regions from SNP 204153 to 204753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,349 DEBUG Processing 594/734 atomic regions from SNP 178153 to 178753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,376 DEBUG Processing 593/706 atomic regions from SNP 177805 to 178405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,419 DEBUG Processing 171/666 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,420 DEBUG Processing 53/726 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,570 DEBUG Processing 682/749 atomic regions from SNP 204453 to 205053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,596 DEBUG Processing 595/734 atomic regions from SNP 178453 to 179053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,655 DEBUG Processing 172/666 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,663 DEBUG Processing 54/726 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,664 DEBUG Processing 594/706 atomic regions from SNP 178105 to 178705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,817 DEBUG Processing 683/749 atomic regions from SNP 204753 to 205353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,844 DEBUG Processing 596/734 atomic regions from SNP 178753 to 179353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,886 DEBUG Processing 173/666 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:35,899 DEBUG Processing 55/726 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,954 DEBUG Processing 595/706 atomic regions from SNP 178405 to 179005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,057 DEBUG Processing 684/749 atomic regions from SNP 205053 to 205653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,085 DEBUG Processing 597/734 atomic regions from SNP 179053 to 179653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,107 DEBUG Processing 174/666 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,136 DEBUG Processing 56/726 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,254 DEBUG Processing 596/706 atomic regions from SNP 178705 to 179305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,312 DEBUG Processing 685/749 atomic regions from SNP 205353 to 205953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,325 DEBUG Processing 175/666 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,336 DEBUG Processing 598/734 atomic regions from SNP 179353 to 179953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,365 DEBUG Processing 57/726 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,492 DEBUG Subchromosome time: 264.0624756999314, subchromosome SNPs: 257459 2025-01-31 09:51:36,492 DEBUG Estimated BADs: [1.35, 0.67, 2.69, 1.35, 2.69, 1.35, 0.34, 1.35, 0.67, 2.69, 0.34, 0.67, 2.69, 1.35, 0.67, 2.69, 6.73, 2.69, 0.34, 1.35] SNP counts: [10922, 32007, 12844, 5916, 1785, 8681, 2692, 24900, 17579, 6411, 9311, 5733, 16519, 21878, 15605, 20552, 1042, 8074, 4802, 30206] SNP IDs counts: [10922, 32007, 12844, 5916, 1785, 8681, 2692, 24900, 17579, 6411, 9311, 5733, 16519, 21878, 15605, 20552, 1042, 8074, 4802, 30206] Critical gap: 663469bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.37Mbp, 28.26Mbp, 35.13Mbp, 38.43Mbp, 39.36Mbp, 44.38Mbp, 45.97Mbp, 60.02Mbp, 70.69Mbp, 74.20Mbp, 79.74Mbp, 82.99Mbp, 91.94Mbp, 103.88Mbp, 112.93Mbp, 124.66Mbp, 125.22Mbp, 129.58Mbp, 132.80Mbp, 149.74Mbp] 2025-01-31 09:51:36,492 DEBUG chr6 time: 264.0629792176187 s 2025-01-31 09:51:36,532 DEBUG Processing 597/706 atomic regions from SNP 179005 to 179605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,547 DEBUG Processing 176/666 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,556 DEBUG Processing 686/749 atomic regions from SNP 205653 to 206253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,591 DEBUG Processing 58/726 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,594 DEBUG Processing 599/734 atomic regions from SNP 179653 to 180253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,653 DEBUG chr6: Fitting background model for 20 segments 2025-01-31 09:51:36,776 DEBUG Processing 177/666 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:36,795 DEBUG Processing 687/749 atomic regions from SNP 205953 to 206553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,806 DEBUG Processing 598/706 atomic regions from SNP 179305 to 179905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,824 DEBUG Processing 59/726 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,842 DEBUG Processing 600/734 atomic regions from SNP 179953 to 180553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,007 DEBUG Processing 178/666 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,031 DEBUG Processing 688/749 atomic regions from SNP 206253 to 206853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,063 DEBUG Processing 60/726 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,087 DEBUG Processing 599/706 atomic regions from SNP 179605 to 180205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,096 DEBUG Processing 601/734 atomic regions from SNP 180253 to 180853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,243 DEBUG Processing 179/666 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,276 DEBUG Processing 689/749 atomic regions from SNP 206553 to 207153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,310 DEBUG Processing 61/726 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,362 DEBUG Processing 602/734 atomic regions from SNP 180553 to 181153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,366 DEBUG Processing 600/706 atomic regions from SNP 179905 to 180505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,471 DEBUG Processing 180/666 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,516 DEBUG Processing 690/749 atomic regions from SNP 206853 to 207453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,551 DEBUG Processing 62/726 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,598 DEBUG Processing 603/734 atomic regions from SNP 180853 to 181453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,618 DEBUG Processing 601/706 atomic regions from SNP 180205 to 180805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,698 DEBUG Processing 181/666 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:37,755 DEBUG Processing 691/749 atomic regions from SNP 207153 to 207753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,790 DEBUG Processing 63/726 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,843 DEBUG Processing 604/734 atomic regions from SNP 181153 to 181753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,886 DEBUG Processing 602/706 atomic regions from SNP 180505 to 181105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,927 DEBUG Processing 182/666 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,005 DEBUG Processing 692/749 atomic regions from SNP 207453 to 208053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,039 DEBUG Processing 64/726 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,085 DEBUG Processing 605/734 atomic regions from SNP 181453 to 182053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,141 DEBUG Processing 603/706 atomic regions from SNP 180805 to 181405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,148 DEBUG Processing 183/666 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,248 DEBUG Processing 693/749 atomic regions from SNP 207753 to 208353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,278 DEBUG Processing 65/726 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,324 DEBUG Processing 606/734 atomic regions from SNP 181753 to 182353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,376 DEBUG Processing 184/666 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,391 DEBUG Processing 604/706 atomic regions from SNP 181105 to 181705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,488 DEBUG Processing 694/749 atomic regions from SNP 208053 to 208653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,512 DEBUG Processing 66/726 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,558 DEBUG Processing 607/734 atomic regions from SNP 182053 to 182653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,600 DEBUG Processing 185/666 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,656 DEBUG Processing 605/706 atomic regions from SNP 181405 to 182005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,721 DEBUG Processing 695/749 atomic regions from SNP 208353 to 208953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,746 DEBUG Processing 67/726 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,792 DEBUG Processing 608/734 atomic regions from SNP 182353 to 182953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,828 DEBUG Processing 186/666 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:38,895 DEBUG Processing 606/706 atomic regions from SNP 181705 to 182305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,949 DEBUG Processing 696/749 atomic regions from SNP 208653 to 209253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,982 DEBUG Processing 68/726 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,017 DEBUG Processing 609/734 atomic regions from SNP 182653 to 183253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,061 DEBUG Processing 187/666 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,131 DEBUG Processing 607/706 atomic regions from SNP 182005 to 182605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,182 DEBUG Processing 697/749 atomic regions from SNP 208953 to 209553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,224 DEBUG Processing 69/726 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,245 DEBUG Processing 610/734 atomic regions from SNP 182953 to 183553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,296 DEBUG Processing 188/666 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,374 DEBUG Processing 608/706 atomic regions from SNP 182305 to 182905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,417 DEBUG Processing 698/749 atomic regions from SNP 209253 to 209853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,459 DEBUG Processing 70/726 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,472 DEBUG Processing 611/734 atomic regions from SNP 183253 to 183853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,533 DEBUG Processing 189/666 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,614 DEBUG Processing 609/706 atomic regions from SNP 182605 to 183205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,664 DEBUG Processing 699/749 atomic regions from SNP 209553 to 210153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,691 DEBUG Processing 71/726 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,710 DEBUG Processing 612/734 atomic regions from SNP 183553 to 184153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,770 DEBUG Processing 190/666 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:39,858 DEBUG Processing 610/706 atomic regions from SNP 182905 to 183505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,910 DEBUG Processing 700/749 atomic regions from SNP 209853 to 210453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,924 DEBUG Processing 72/726 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,944 DEBUG Processing 613/734 atomic regions from SNP 183853 to 184453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,998 DEBUG Processing 191/666 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,099 DEBUG Processing 611/706 atomic regions from SNP 183205 to 183805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,149 DEBUG Processing 701/749 atomic regions from SNP 210153 to 210753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,154 DEBUG Processing 73/726 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,175 DEBUG Processing 614/734 atomic regions from SNP 184153 to 184753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,226 DEBUG Processing 192/666 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,338 DEBUG Processing 612/706 atomic regions from SNP 183505 to 184105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,378 DEBUG Processing 74/726 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,388 DEBUG Processing 702/749 atomic regions from SNP 210453 to 211053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,415 DEBUG Processing 615/734 atomic regions from SNP 184453 to 185053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,458 DEBUG Processing 193/666 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,579 DEBUG Processing 613/706 atomic regions from SNP 183805 to 184405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,602 DEBUG Processing 75/726 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,632 DEBUG Processing 703/749 atomic regions from SNP 210753 to 211353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,661 DEBUG Processing 616/734 atomic regions from SNP 184753 to 185353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,693 DEBUG Processing 194/666 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:40,819 DEBUG Processing 614/706 atomic regions from SNP 184105 to 184705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,827 DEBUG Processing 76/726 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,867 DEBUG Processing 704/749 atomic regions from SNP 211053 to 211653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,895 DEBUG Processing 617/734 atomic regions from SNP 185053 to 185653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,932 DEBUG Processing 195/666 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,051 DEBUG Processing 77/726 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,053 DEBUG Processing 615/706 atomic regions from SNP 184405 to 185005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,109 DEBUG Processing 705/749 atomic regions from SNP 211353 to 211953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,122 DEBUG Processing 618/734 atomic regions from SNP 185353 to 185953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,171 DEBUG Processing 196/666 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,285 DEBUG Processing 78/726 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,301 DEBUG Processing 616/706 atomic regions from SNP 184705 to 185305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,351 DEBUG Processing 706/749 atomic regions from SNP 211653 to 212253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,359 DEBUG Processing 619/734 atomic regions from SNP 185653 to 186253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,412 DEBUG Processing 197/666 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,520 DEBUG Processing 79/726 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,561 DEBUG Processing 617/706 atomic regions from SNP 185005 to 185605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,597 DEBUG Processing 707/749 atomic regions from SNP 211953 to 212553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,607 DEBUG Processing 620/734 atomic regions from SNP 185953 to 186553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,652 DEBUG Processing 198/666 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,754 DEBUG Processing 80/726 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,824 DEBUG Processing 618/706 atomic regions from SNP 185305 to 185905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,842 DEBUG Processing 708/749 atomic regions from SNP 212253 to 212853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,844 DEBUG Processing 621/734 atomic regions from SNP 186253 to 186853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,891 DEBUG Processing 199/666 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:41,990 DEBUG Processing 81/726 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,075 DEBUG Processing 619/706 atomic regions from SNP 185605 to 186205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,087 DEBUG Processing 709/749 atomic regions from SNP 212553 to 213153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,101 DEBUG Processing 622/734 atomic regions from SNP 186553 to 187153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,126 DEBUG Processing 200/666 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,224 DEBUG Processing 82/726 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,320 DEBUG Processing 620/706 atomic regions from SNP 185905 to 186505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,327 DEBUG Processing 710/749 atomic regions from SNP 212853 to 213453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,355 DEBUG Processing 623/734 atomic regions from SNP 186853 to 187453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,355 DEBUG Processing 201/666 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,465 DEBUG Processing 83/726 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,568 DEBUG Processing 711/749 atomic regions from SNP 213153 to 213753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,569 DEBUG Processing 621/706 atomic regions from SNP 186205 to 186805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,583 DEBUG Processing 202/666 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,617 DEBUG Processing 624/734 atomic regions from SNP 187153 to 187753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,707 DEBUG Processing 84/726 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,810 DEBUG Processing 203/666 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:42,812 DEBUG Processing 712/749 atomic regions from SNP 213453 to 214053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,819 DEBUG Processing 622/706 atomic regions from SNP 186505 to 187105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,868 DEBUG Processing 625/734 atomic regions from SNP 187453 to 188053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,951 DEBUG Processing 85/726 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,042 DEBUG Processing 204/666 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,060 DEBUG Processing 713/749 atomic regions from SNP 213753 to 214353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,071 DEBUG Processing 623/706 atomic regions from SNP 186805 to 187405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,129 DEBUG Processing 626/734 atomic regions from SNP 187753 to 188353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,191 DEBUG Processing 86/726 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,270 DEBUG Processing 205/666 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,304 DEBUG Processing 714/749 atomic regions from SNP 214053 to 214653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,321 DEBUG Processing 624/706 atomic regions from SNP 187105 to 187705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,378 DEBUG Processing 627/734 atomic regions from SNP 188053 to 188653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,431 DEBUG Processing 87/726 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,499 DEBUG Processing 206/666 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,546 DEBUG Processing 715/749 atomic regions from SNP 214353 to 214953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,567 DEBUG Processing 625/706 atomic regions from SNP 187405 to 188005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,634 DEBUG Processing 628/734 atomic regions from SNP 188353 to 188953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,674 DEBUG Processing 88/726 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,739 DEBUG Processing 207/666 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:43,788 DEBUG Processing 716/749 atomic regions from SNP 214653 to 215253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,813 DEBUG Processing 626/706 atomic regions from SNP 187705 to 188305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,890 DEBUG Processing 629/734 atomic regions from SNP 188653 to 189253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,922 DEBUG Processing 89/726 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,010 DEBUG Processing 208/666 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,029 DEBUG Processing 717/749 atomic regions from SNP 214953 to 215553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,060 DEBUG Processing 627/706 atomic regions from SNP 188005 to 188605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,156 DEBUG Processing 630/734 atomic regions from SNP 188953 to 189553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,164 DEBUG Processing 90/726 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,247 DEBUG Processing 209/666 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,273 DEBUG Processing 718/749 atomic regions from SNP 215253 to 215853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,314 DEBUG Processing 628/706 atomic regions from SNP 188305 to 188905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,386 DEBUG Processing 631/734 atomic regions from SNP 189253 to 189853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,396 DEBUG Processing 91/726 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,491 DEBUG Processing 210/666 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,514 DEBUG Processing 719/749 atomic regions from SNP 215553 to 216153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,581 DEBUG Processing 629/706 atomic regions from SNP 188605 to 189205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,623 DEBUG Processing 632/734 atomic regions from SNP 189553 to 190153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,631 DEBUG Processing 92/726 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,718 DEBUG Processing 211/666 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,750 DEBUG Processing 720/749 atomic regions from SNP 215853 to 216453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,851 DEBUG Processing 630/706 atomic regions from SNP 188905 to 189505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,868 DEBUG Processing 633/734 atomic regions from SNP 189853 to 190453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,873 DEBUG Processing 93/726 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,959 DEBUG Processing 212/666 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:44,998 DEBUG Processing 721/749 atomic regions from SNP 216153 to 216753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,117 DEBUG Processing 634/734 atomic regions from SNP 190153 to 190753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,118 DEBUG Processing 631/706 atomic regions from SNP 189205 to 189805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,125 DEBUG Processing 94/726 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,201 DEBUG Processing 213/666 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,238 DEBUG Processing 722/749 atomic regions from SNP 216453 to 217053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,362 DEBUG Processing 635/734 atomic regions from SNP 190453 to 191053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,363 DEBUG Processing 95/726 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,388 DEBUG Processing 632/706 atomic regions from SNP 189505 to 190105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,435 DEBUG Processing 214/666 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,479 DEBUG Processing 723/749 atomic regions from SNP 216753 to 217353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,604 DEBUG Processing 96/726 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,607 DEBUG Processing 636/734 atomic regions from SNP 190753 to 191353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,653 DEBUG Processing 633/706 atomic regions from SNP 189805 to 190405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,668 DEBUG Processing 215/666 atomic regions from SNP 64414 to 65014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,724 DEBUG Processing 724/749 atomic regions from SNP 217053 to 217653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,840 DEBUG Processing 97/726 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,849 DEBUG Processing 637/734 atomic regions from SNP 191053 to 191653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,901 DEBUG Processing 634/706 atomic regions from SNP 190105 to 190705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,906 DEBUG Processing 216/666 atomic regions from SNP 64714 to 65314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:45,971 DEBUG Processing 725/749 atomic regions from SNP 217353 to 217953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,080 DEBUG Processing 638/734 atomic regions from SNP 191353 to 191953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,083 DEBUG Processing 98/726 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,148 DEBUG Processing 217/666 atomic regions from SNP 65014 to 65614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,157 DEBUG Processing 635/706 atomic regions from SNP 190405 to 191005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,210 DEBUG Processing 726/749 atomic regions from SNP 217653 to 218253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,305 DEBUG Processing 639/734 atomic regions from SNP 191653 to 192253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,322 DEBUG Processing 99/726 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,386 DEBUG Processing 218/666 atomic regions from SNP 65314 to 65914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,422 DEBUG Processing 636/706 atomic regions from SNP 190705 to 191305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,452 DEBUG Processing 727/749 atomic regions from SNP 217953 to 218553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,542 DEBUG Processing 640/734 atomic regions from SNP 191953 to 192553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,586 DEBUG Processing 100/726 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,640 DEBUG Processing 219/666 atomic regions from SNP 65614 to 66214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,664 DEBUG Processing 637/706 atomic regions from SNP 191005 to 191605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,698 DEBUG Processing 728/749 atomic regions from SNP 218253 to 218853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,776 DEBUG Processing 641/734 atomic regions from SNP 192253 to 192853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,858 DEBUG Processing 101/726 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,885 DEBUG Processing 220/666 atomic regions from SNP 65914 to 66514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:46,904 DEBUG Processing 638/706 atomic regions from SNP 191305 to 191905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,948 DEBUG Processing 729/749 atomic regions from SNP 218553 to 219153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,014 DEBUG Processing 642/734 atomic regions from SNP 192553 to 193153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,135 DEBUG Processing 221/666 atomic regions from SNP 66214 to 66814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,139 DEBUG Processing 102/726 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,145 DEBUG Processing 639/706 atomic regions from SNP 191605 to 192205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,216 DEBUG Processing 730/749 atomic regions from SNP 218853 to 219453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,247 DEBUG Processing 643/734 atomic regions from SNP 192853 to 193453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,383 DEBUG Processing 222/666 atomic regions from SNP 66514 to 67114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,388 DEBUG Processing 640/706 atomic regions from SNP 191905 to 192505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,424 DEBUG Processing 103/726 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,480 DEBUG Processing 644/734 atomic regions from SNP 193153 to 193753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,492 DEBUG Processing 731/749 atomic regions from SNP 219153 to 219753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,621 DEBUG Processing 223/666 atomic regions from SNP 66814 to 67414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,631 DEBUG Processing 641/706 atomic regions from SNP 192205 to 192805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,708 DEBUG Processing 104/726 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,715 DEBUG Processing 645/734 atomic regions from SNP 193453 to 194053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,761 DEBUG Processing 732/749 atomic regions from SNP 219453 to 220053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,861 DEBUG Processing 224/666 atomic regions from SNP 67114 to 67714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:47,876 DEBUG Processing 642/706 atomic regions from SNP 192505 to 193105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,947 DEBUG Processing 646/734 atomic regions from SNP 193753 to 194353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,979 DEBUG Processing 105/726 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,024 DEBUG Processing 733/749 atomic regions from SNP 219753 to 220353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,098 DEBUG Processing 225/666 atomic regions from SNP 67414 to 68014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,118 DEBUG Processing 643/706 atomic regions from SNP 192805 to 193405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,178 DEBUG Processing 647/734 atomic regions from SNP 194053 to 194653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,246 DEBUG Processing 106/726 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,293 DEBUG Processing 734/749 atomic regions from SNP 220053 to 220653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,337 DEBUG Processing 226/666 atomic regions from SNP 67714 to 68314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,365 DEBUG Processing 644/706 atomic regions from SNP 193105 to 193705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,417 DEBUG Processing 648/734 atomic regions from SNP 194353 to 194953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,511 DEBUG Processing 107/726 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,562 DEBUG Processing 735/749 atomic regions from SNP 220353 to 220953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,589 DEBUG Processing 227/666 atomic regions from SNP 68014 to 68614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,626 DEBUG Processing 645/706 atomic regions from SNP 193405 to 194005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,661 DEBUG Processing 649/734 atomic regions from SNP 194653 to 195253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,784 DEBUG Processing 108/726 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,805 DEBUG Processing 736/749 atomic regions from SNP 220653 to 221253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,839 DEBUG Processing 228/666 atomic regions from SNP 68314 to 68914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:48,882 DEBUG Processing 646/706 atomic regions from SNP 193705 to 194305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,905 DEBUG Processing 650/734 atomic regions from SNP 194953 to 195553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,056 DEBUG Processing 109/726 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,069 DEBUG Processing 737/749 atomic regions from SNP 220953 to 221553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,081 DEBUG Processing 229/666 atomic regions from SNP 68614 to 69214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,132 DEBUG Processing 647/706 atomic regions from SNP 194005 to 194605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,150 DEBUG Processing 651/734 atomic regions from SNP 195253 to 195853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,311 DEBUG Processing 110/726 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,324 DEBUG Processing 230/666 atomic regions from SNP 68914 to 69514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,339 DEBUG Processing 738/749 atomic regions from SNP 221253 to 221853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,392 DEBUG Processing 652/734 atomic regions from SNP 195553 to 196153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,398 DEBUG Processing 648/706 atomic regions from SNP 194305 to 194905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,567 DEBUG Processing 231/666 atomic regions from SNP 69214 to 69814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,579 DEBUG Processing 111/726 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,621 DEBUG Processing 739/749 atomic regions from SNP 221553 to 222153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,638 DEBUG Processing 653/734 atomic regions from SNP 195853 to 196453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,660 DEBUG Processing 649/706 atomic regions from SNP 194605 to 195205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,810 DEBUG Processing 232/666 atomic regions from SNP 69514 to 70114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,830 DEBUG Processing 112/726 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,887 DEBUG Processing 654/734 atomic regions from SNP 196153 to 196753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,905 DEBUG Processing 740/749 atomic regions from SNP 221853 to 222453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,914 DEBUG Processing 650/706 atomic regions from SNP 194905 to 195505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,043 DEBUG Processing 233/666 atomic regions from SNP 69814 to 70414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,073 DEBUG Processing 113/726 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,131 DEBUG Processing 655/734 atomic regions from SNP 196453 to 197053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,167 DEBUG Processing 651/706 atomic regions from SNP 195205 to 195805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,180 DEBUG Processing 741/749 atomic regions from SNP 222153 to 222753 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,274 DEBUG Processing 234/666 atomic regions from SNP 70114 to 70714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,310 DEBUG Processing 114/726 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,366 DEBUG Processing 656/734 atomic regions from SNP 196753 to 197353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,419 DEBUG Processing 652/706 atomic regions from SNP 195505 to 196105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,442 DEBUG Processing 742/749 atomic regions from SNP 222453 to 223053 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,518 DEBUG Processing 235/666 atomic regions from SNP 70414 to 71014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,554 DEBUG Processing 115/726 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,602 DEBUG Processing 657/734 atomic regions from SNP 197053 to 197653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,677 DEBUG Processing 653/706 atomic regions from SNP 195805 to 196405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,695 DEBUG Processing 743/749 atomic regions from SNP 222753 to 223353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,761 DEBUG Processing 236/666 atomic regions from SNP 70714 to 71314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,798 DEBUG Processing 116/726 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,839 DEBUG Processing 658/734 atomic regions from SNP 197353 to 197953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,936 DEBUG Processing 654/706 atomic regions from SNP 196105 to 196705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,950 DEBUG Processing 744/749 atomic regions from SNP 223053 to 223653 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,001 DEBUG Processing 237/666 atomic regions from SNP 71014 to 71614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,038 DEBUG Processing 117/726 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,099 DEBUG Processing 659/734 atomic regions from SNP 197653 to 198253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,192 DEBUG Processing 655/706 atomic regions from SNP 196405 to 197005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,204 DEBUG Processing 745/749 atomic regions from SNP 223353 to 223953 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,243 DEBUG Processing 238/666 atomic regions from SNP 71314 to 71914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,280 DEBUG Processing 118/726 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,364 DEBUG Processing 660/734 atomic regions from SNP 197953 to 198553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,451 DEBUG Processing 656/706 atomic regions from SNP 196705 to 197305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,457 DEBUG Processing 746/749 atomic regions from SNP 223653 to 224253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,481 DEBUG Processing 239/666 atomic regions from SNP 71614 to 72214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,520 DEBUG Processing 119/726 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,641 DEBUG Processing 661/734 atomic regions from SNP 198253 to 198853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,711 DEBUG Processing 747/749 atomic regions from SNP 223953 to 224553 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,712 DEBUG Processing 657/706 atomic regions from SNP 197005 to 197605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,725 DEBUG Processing 240/666 atomic regions from SNP 71914 to 72514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,768 DEBUG Processing 120/726 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,913 DEBUG Processing 662/734 atomic regions from SNP 198553 to 199153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,961 DEBUG Processing 748/749 atomic regions from SNP 224253 to 224853 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,970 DEBUG Processing 658/706 atomic regions from SNP 197305 to 197905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,995 DEBUG Processing 241/666 atomic regions from SNP 72214 to 72814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,012 DEBUG Processing 121/726 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,178 DEBUG Processing 663/734 atomic regions from SNP 198853 to 199453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,216 DEBUG Processing 749/749 atomic regions from SNP 224553 to 225153 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,231 DEBUG Processing 659/706 atomic regions from SNP 197605 to 198205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,256 DEBUG Processing 242/666 atomic regions from SNP 72514 to 73114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,261 DEBUG Processing 122/726 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,375 DEBUG Unique SNPs positions in subchromosome 1: 225154 2025-01-31 09:51:52,433 DEBUG Processing 664/734 atomic regions from SNP 199153 to 199753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,499 DEBUG Processing 660/706 atomic regions from SNP 197905 to 198505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,508 DEBUG Processing 243/666 atomic regions from SNP 72814 to 73414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,520 DEBUG Processing 123/726 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,683 DEBUG Processing 665/734 atomic regions from SNP 199453 to 200053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,768 DEBUG Processing 244/666 atomic regions from SNP 73114 to 73714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,772 DEBUG Processing 661/706 atomic regions from SNP 198205 to 198805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,777 DEBUG Processing 124/726 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,925 DEBUG Processing 666/734 atomic regions from SNP 199753 to 200353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,003 DEBUG Processing 245/666 atomic regions from SNP 73414 to 74014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,022 DEBUG Processing 662/706 atomic regions from SNP 198505 to 199105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,022 DEBUG Processing 125/726 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,169 DEBUG Processing 667/734 atomic regions from SNP 200053 to 200653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,242 DEBUG Processing 246/666 atomic regions from SNP 73714 to 74314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,270 DEBUG Processing 663/706 atomic regions from SNP 198805 to 199405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,273 DEBUG Processing 126/726 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,410 DEBUG Processing 668/734 atomic regions from SNP 200353 to 200953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,518 DEBUG Processing 247/666 atomic regions from SNP 74014 to 74614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,521 DEBUG Processing 664/706 atomic regions from SNP 199105 to 199705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,521 DEBUG Processing 127/726 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,681 DEBUG Processing 669/734 atomic regions from SNP 200653 to 201253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,795 DEBUG Processing 128/726 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,798 DEBUG Processing 665/706 atomic regions from SNP 199405 to 200005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,813 DEBUG Processing 248/666 atomic regions from SNP 74314 to 74914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,933 DEBUG Processing 670/734 atomic regions from SNP 200953 to 201553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,039 DEBUG Processing 129/726 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,048 DEBUG Processing 666/706 atomic regions from SNP 199705 to 200305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,082 DEBUG Processing 249/666 atomic regions from SNP 74614 to 75214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,181 DEBUG Processing 671/734 atomic regions from SNP 201253 to 201853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,275 DEBUG Processing 130/726 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,293 DEBUG Processing 667/706 atomic regions from SNP 200005 to 200605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,319 DEBUG Processing 250/666 atomic regions from SNP 74914 to 75514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,425 DEBUG Processing 672/734 atomic regions from SNP 201553 to 202153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,510 DEBUG Processing 131/726 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,552 DEBUG Processing 251/666 atomic regions from SNP 75214 to 75814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,557 DEBUG Processing 668/706 atomic regions from SNP 200305 to 200905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,681 DEBUG Processing 673/734 atomic regions from SNP 201853 to 202453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,746 DEBUG Processing 132/726 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,787 DEBUG Processing 252/666 atomic regions from SNP 75514 to 76114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,814 DEBUG Processing 669/706 atomic regions from SNP 200605 to 201205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,955 DEBUG Processing 674/734 atomic regions from SNP 202153 to 202753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,980 DEBUG Processing 133/726 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,022 DEBUG Processing 253/666 atomic regions from SNP 75814 to 76414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,059 DEBUG Processing 670/706 atomic regions from SNP 200905 to 201505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,216 DEBUG Processing 134/726 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,242 DEBUG Processing 675/734 atomic regions from SNP 202453 to 203053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,260 DEBUG Processing 254/666 atomic regions from SNP 76114 to 76714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,309 DEBUG Processing 671/706 atomic regions from SNP 201205 to 201805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,450 DEBUG Processing 135/726 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,494 DEBUG Processing 255/666 atomic regions from SNP 76414 to 77014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,522 DEBUG Processing 676/734 atomic regions from SNP 202753 to 203353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,555 DEBUG Processing 672/706 atomic regions from SNP 201505 to 202105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,686 DEBUG Processing 136/726 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,741 DEBUG Processing 256/666 atomic regions from SNP 76714 to 77314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,789 DEBUG Processing 677/734 atomic regions from SNP 203053 to 203653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,792 DEBUG Processing 673/706 atomic regions from SNP 201805 to 202405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,926 DEBUG Processing 137/726 atomic regions from SNP 40936 to 41536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,997 DEBUG Processing 257/666 atomic regions from SNP 77014 to 77614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,040 DEBUG Processing 674/706 atomic regions from SNP 202105 to 202705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,064 DEBUG Processing 678/734 atomic regions from SNP 203353 to 203953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,158 DEBUG Processing 138/726 atomic regions from SNP 41236 to 41836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,268 DEBUG Processing 258/666 atomic regions from SNP 77314 to 77914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,292 DEBUG Processing 675/706 atomic regions from SNP 202405 to 203005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,332 DEBUG Processing 679/734 atomic regions from SNP 203653 to 204253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,389 DEBUG Processing 139/726 atomic regions from SNP 41536 to 42136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,544 DEBUG Processing 259/666 atomic regions from SNP 77614 to 78214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,560 DEBUG Processing 676/706 atomic regions from SNP 202705 to 203305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,609 DEBUG Processing 680/734 atomic regions from SNP 203953 to 204553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,620 DEBUG Processing 140/726 atomic regions from SNP 41836 to 42436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,681 DEBUG Subchromosome time: 219.22204891219735, subchromosome SNPs: 225154 2025-01-31 09:51:56,682 DEBUG Estimated BADs: [1.44, 14.44, 1.44, 0.48, 1.44, 0.72, 1.44, 2.89, 1.44, 0.29, 0.72, 1.44, 2.89, 0.36, 1.44, 2.89, 11.55, 2.89, 1.44, 0.48, 1.44, 0.72, 5.78, 1.44] SNP counts: [4806, 99, 16233, 2461, 22836, 15006, 3375, 6310, 6234, 4180, 12607, 4457, 7975, 2555, 17791, 7135, 3601, 1807, 32401, 16170, 26103, 4498, 3308, 3206] SNP IDs counts: [4806, 99, 16233, 2461, 22836, 15006, 3375, 6310, 6234, 4180, 12607, 4457, 7975, 2555, 17791, 7135, 3601, 1807, 32401, 16170, 26103, 4498, 3308, 3206] Critical gap: 617173bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.80Mbp, 5.86Mbp, 15.13Mbp, 16.62Mbp, 29.45Mbp, 38.21Mbp, 40.11Mbp, 43.46Mbp, 46.91Mbp, 49.55Mbp, 57.00Mbp, 59.84Mbp, 64.08Mbp, 65.74Mbp, 75.64Mbp, 79.61Mbp, 81.48Mbp, 82.83Mbp, 100.64Mbp, 109.97Mbp, 124.37Mbp, 126.90Mbp, 128.64Mbp, 130.69Mbp] 2025-01-31 09:51:56,682 DEBUG chr10 time: 219.2225450091064 s 2025-01-31 09:51:56,804 DEBUG Processing 677/706 atomic regions from SNP 203005 to 203605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,807 DEBUG Processing 260/666 atomic regions from SNP 77914 to 78514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,815 DEBUG chr10: Fitting background model for 24 segments 2025-01-31 09:51:56,852 DEBUG Processing 141/726 atomic regions from SNP 42136 to 42736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,887 DEBUG Processing 681/734 atomic regions from SNP 204253 to 204853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,056 DEBUG Processing 678/706 atomic regions from SNP 203305 to 203905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,076 DEBUG Processing 261/666 atomic regions from SNP 78214 to 78814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,097 DEBUG Processing 142/726 atomic regions from SNP 42436 to 43036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,171 DEBUG Processing 682/734 atomic regions from SNP 204553 to 205153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,302 DEBUG Processing 679/706 atomic regions from SNP 203605 to 204205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,337 DEBUG Processing 143/726 atomic regions from SNP 42736 to 43336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,339 DEBUG Processing 262/666 atomic regions from SNP 78514 to 79114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,442 DEBUG Processing 683/734 atomic regions from SNP 204853 to 205453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,572 DEBUG Processing 263/666 atomic regions from SNP 78814 to 79414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,581 DEBUG Processing 680/706 atomic regions from SNP 203905 to 204505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,583 DEBUG Processing 144/726 atomic regions from SNP 43036 to 43636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,710 DEBUG Processing 684/734 atomic regions from SNP 205153 to 205753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,819 DEBUG Processing 145/726 atomic regions from SNP 43336 to 43936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,831 DEBUG Processing 264/666 atomic regions from SNP 79114 to 79714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,853 DEBUG Processing 681/706 atomic regions from SNP 204205 to 204805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,978 DEBUG Processing 685/734 atomic regions from SNP 205453 to 206053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,058 DEBUG Processing 146/726 atomic regions from SNP 43636 to 44236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,098 DEBUG Processing 265/666 atomic regions from SNP 79414 to 80014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,144 DEBUG Processing 682/706 atomic regions from SNP 204505 to 205105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,240 DEBUG Processing 686/734 atomic regions from SNP 205753 to 206353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,294 DEBUG Processing 147/726 atomic regions from SNP 43936 to 44536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,360 DEBUG Processing 266/666 atomic regions from SNP 79714 to 80314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,436 DEBUG Processing 683/706 atomic regions from SNP 204805 to 205405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,505 DEBUG Processing 687/734 atomic regions from SNP 206053 to 206653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,531 DEBUG Processing 148/726 atomic regions from SNP 44236 to 44836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,610 DEBUG Processing 267/666 atomic regions from SNP 80014 to 80614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,730 DEBUG Processing 684/706 atomic regions from SNP 205105 to 205705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,770 DEBUG Processing 149/726 atomic regions from SNP 44536 to 45136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,779 DEBUG Processing 688/734 atomic regions from SNP 206353 to 206953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,836 DEBUG Processing 268/666 atomic regions from SNP 80314 to 80914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,008 DEBUG Processing 685/706 atomic regions from SNP 205405 to 206005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,015 DEBUG Processing 150/726 atomic regions from SNP 44836 to 45436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,059 DEBUG Processing 689/734 atomic regions from SNP 206653 to 207253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,073 DEBUG Processing 269/666 atomic regions from SNP 80614 to 81214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,259 DEBUG Processing 151/726 atomic regions from SNP 45136 to 45736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,286 DEBUG Processing 686/706 atomic regions from SNP 205705 to 206305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,314 DEBUG Processing 270/666 atomic regions from SNP 80914 to 81514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,350 DEBUG Processing 690/734 atomic regions from SNP 206953 to 207553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,507 DEBUG Processing 152/726 atomic regions from SNP 45436 to 46036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,568 DEBUG Processing 687/706 atomic regions from SNP 206005 to 206605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,575 DEBUG Processing 271/666 atomic regions from SNP 81214 to 81814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,640 DEBUG Processing 691/734 atomic regions from SNP 207253 to 207853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,751 DEBUG Processing 153/726 atomic regions from SNP 45736 to 46336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,825 DEBUG Processing 272/666 atomic regions from SNP 81514 to 82114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,849 DEBUG Processing 688/706 atomic regions from SNP 206305 to 206905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,919 DEBUG Processing 692/734 atomic regions from SNP 207553 to 208153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,987 DEBUG Processing 154/726 atomic regions from SNP 46036 to 46636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,062 DEBUG Processing 273/666 atomic regions from SNP 81814 to 82414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,119 DEBUG Processing 689/706 atomic regions from SNP 206605 to 207205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,195 DEBUG Processing 693/734 atomic regions from SNP 207853 to 208453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,226 DEBUG Processing 155/726 atomic regions from SNP 46336 to 46936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,295 DEBUG Processing 274/666 atomic regions from SNP 82114 to 82714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,395 DEBUG Processing 690/706 atomic regions from SNP 206905 to 207505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,461 DEBUG Processing 156/726 atomic regions from SNP 46636 to 47236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,475 DEBUG Processing 694/734 atomic regions from SNP 208153 to 208753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,527 DEBUG Processing 275/666 atomic regions from SNP 82414 to 83014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,653 DEBUG Processing 691/706 atomic regions from SNP 207205 to 207805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,702 DEBUG Processing 157/726 atomic regions from SNP 46936 to 47536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,766 DEBUG Processing 276/666 atomic regions from SNP 82714 to 83314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,767 DEBUG Processing 695/734 atomic regions from SNP 208453 to 209053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,896 DEBUG Processing 692/706 atomic regions from SNP 207505 to 208105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,938 DEBUG Processing 158/726 atomic regions from SNP 47236 to 47836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,999 DEBUG Processing 277/666 atomic regions from SNP 83014 to 83614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,052 DEBUG Processing 696/734 atomic regions from SNP 208753 to 209353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,158 DEBUG Processing 693/706 atomic regions from SNP 207805 to 208405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,173 DEBUG Processing 159/726 atomic regions from SNP 47536 to 48136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,236 DEBUG Processing 278/666 atomic regions from SNP 83314 to 83914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,327 DEBUG Processing 697/734 atomic regions from SNP 209053 to 209653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,398 DEBUG Processing 160/726 atomic regions from SNP 47836 to 48436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,421 DEBUG Processing 694/706 atomic regions from SNP 208105 to 208705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,473 DEBUG Processing 279/666 atomic regions from SNP 83614 to 84214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,499 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:52:01,594 DEBUG Processing 698/734 atomic regions from SNP 209353 to 209953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,622 DEBUG Processing 161/726 atomic regions from SNP 48136 to 48736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,669 DEBUG Processing 695/706 atomic regions from SNP 208405 to 209005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,700 DEBUG Processing 280/666 atomic regions from SNP 83914 to 84514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,853 DEBUG Processing 162/726 atomic regions from SNP 48436 to 49036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,873 DEBUG Processing 699/734 atomic regions from SNP 209653 to 210253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,926 DEBUG Processing 281/666 atomic regions from SNP 84214 to 84814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,933 DEBUG Processing 696/706 atomic regions from SNP 208705 to 209305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,087 DEBUG Processing 163/726 atomic regions from SNP 48736 to 49336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,150 DEBUG Processing 282/666 atomic regions from SNP 84514 to 85114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,156 DEBUG Processing 700/734 atomic regions from SNP 209953 to 210553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,202 DEBUG Processing 697/706 atomic regions from SNP 209005 to 209605 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,336 DEBUG Processing 164/726 atomic regions from SNP 49036 to 49636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,377 DEBUG Processing 283/666 atomic regions from SNP 84814 to 85414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,439 DEBUG Processing 701/734 atomic regions from SNP 210253 to 210853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,476 DEBUG Processing 698/706 atomic regions from SNP 209305 to 209905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,573 DEBUG Processing 165/726 atomic regions from SNP 49336 to 49936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,605 DEBUG Processing 284/666 atomic regions from SNP 85114 to 85714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,711 DEBUG Processing 702/734 atomic regions from SNP 210553 to 211153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,742 DEBUG Processing 699/706 atomic regions from SNP 209605 to 210205 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,796 DEBUG Processing 166/726 atomic regions from SNP 49636 to 50236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,825 DEBUG Processing 285/666 atomic regions from SNP 85414 to 86014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,986 DEBUG Processing 703/734 atomic regions from SNP 210853 to 211453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,987 DEBUG Processing 700/706 atomic regions from SNP 209905 to 210505 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,016 DEBUG Processing 167/726 atomic regions from SNP 49936 to 50536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,047 DEBUG Processing 286/666 atomic regions from SNP 85714 to 86314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,233 DEBUG Processing 701/706 atomic regions from SNP 210205 to 210805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,235 DEBUG Processing 168/726 atomic regions from SNP 50236 to 50836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,252 DEBUG Processing 704/734 atomic regions from SNP 211153 to 211753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,265 DEBUG Processing 287/666 atomic regions from SNP 86014 to 86614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,454 DEBUG Processing 169/726 atomic regions from SNP 50536 to 51136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,478 DEBUG Processing 702/706 atomic regions from SNP 210505 to 211105 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,487 DEBUG Processing 288/666 atomic regions from SNP 86314 to 86914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,517 DEBUG Processing 705/734 atomic regions from SNP 211453 to 212053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,676 DEBUG Processing 170/726 atomic regions from SNP 50836 to 51436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,705 DEBUG Processing 289/666 atomic regions from SNP 86614 to 87214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,730 DEBUG Processing 703/706 atomic regions from SNP 210805 to 211405 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,780 DEBUG Processing 706/734 atomic regions from SNP 211753 to 212353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,900 DEBUG Processing 171/726 atomic regions from SNP 51136 to 51736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,923 DEBUG Processing 290/666 atomic regions from SNP 86914 to 87514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,980 DEBUG Processing 704/706 atomic regions from SNP 211105 to 211705 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,040 DEBUG Processing 707/734 atomic regions from SNP 212053 to 212653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,128 DEBUG Processing 172/726 atomic regions from SNP 51436 to 52036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,145 DEBUG Processing 291/666 atomic regions from SNP 87214 to 87814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,226 DEBUG Processing 705/706 atomic regions from SNP 211405 to 212005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,296 DEBUG Processing 708/734 atomic regions from SNP 212353 to 212953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,360 DEBUG Processing 173/726 atomic regions from SNP 51736 to 52336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,369 DEBUG Processing 292/666 atomic regions from SNP 87514 to 88114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,462 DEBUG Processing 706/706 atomic regions from SNP 211705 to 212305 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,571 DEBUG Processing 709/734 atomic regions from SNP 212653 to 213253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,593 DEBUG Processing 174/726 atomic regions from SNP 52036 to 52636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,594 DEBUG Unique SNPs positions in subchromosome 3: 212306 2025-01-31 09:52:04,595 DEBUG Processing 293/666 atomic regions from SNP 87814 to 88414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,824 DEBUG Processing 294/666 atomic regions from SNP 88114 to 88714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,827 DEBUG Processing 710/734 atomic regions from SNP 212953 to 213553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,828 DEBUG Processing 175/726 atomic regions from SNP 52336 to 52936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,056 DEBUG Processing 295/666 atomic regions from SNP 88414 to 89014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,063 DEBUG Processing 176/726 atomic regions from SNP 52636 to 53236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,079 DEBUG Processing 711/734 atomic regions from SNP 213253 to 213853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,286 DEBUG Processing 296/666 atomic regions from SNP 88714 to 89314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,297 DEBUG Processing 177/726 atomic regions from SNP 52936 to 53536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,345 DEBUG Processing 712/734 atomic regions from SNP 213553 to 214153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,514 DEBUG Processing 297/666 atomic regions from SNP 89014 to 89614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,531 DEBUG Processing 178/726 atomic regions from SNP 53236 to 53836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,604 DEBUG Processing 713/734 atomic regions from SNP 213853 to 214453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,736 DEBUG Processing 298/666 atomic regions from SNP 89314 to 89914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,760 DEBUG Processing 179/726 atomic regions from SNP 53536 to 54136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,855 DEBUG Processing 714/734 atomic regions from SNP 214153 to 214753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,964 DEBUG Processing 299/666 atomic regions from SNP 89614 to 90214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,988 DEBUG Processing 180/726 atomic regions from SNP 53836 to 54436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,101 DEBUG Processing 715/734 atomic regions from SNP 214453 to 215053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,201 DEBUG Processing 300/666 atomic regions from SNP 89914 to 90514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,216 DEBUG Processing 181/726 atomic regions from SNP 54136 to 54736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,351 DEBUG Processing 716/734 atomic regions from SNP 214753 to 215353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,449 DEBUG Processing 301/666 atomic regions from SNP 90214 to 90814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,450 DEBUG Processing 182/726 atomic regions from SNP 54436 to 55036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,607 DEBUG Processing 717/734 atomic regions from SNP 215053 to 215653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,686 DEBUG Processing 183/726 atomic regions from SNP 54736 to 55336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,697 DEBUG Processing 302/666 atomic regions from SNP 90514 to 91114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,861 DEBUG Processing 718/734 atomic regions from SNP 215353 to 215953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,921 DEBUG Processing 184/726 atomic regions from SNP 55036 to 55636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,927 DEBUG Processing 303/666 atomic regions from SNP 90814 to 91414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,123 DEBUG Processing 719/734 atomic regions from SNP 215653 to 216253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,160 DEBUG Processing 185/726 atomic regions from SNP 55336 to 55936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,163 DEBUG Processing 304/666 atomic regions from SNP 91114 to 91714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,394 DEBUG Processing 720/734 atomic regions from SNP 215953 to 216553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,400 DEBUG Processing 305/666 atomic regions from SNP 91414 to 92014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,401 DEBUG Processing 186/726 atomic regions from SNP 55636 to 56236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,632 DEBUG Processing 306/666 atomic regions from SNP 91714 to 92314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,635 DEBUG Processing 187/726 atomic regions from SNP 55936 to 56536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,640 DEBUG Processing 721/734 atomic regions from SNP 216253 to 216853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,865 DEBUG Processing 307/666 atomic regions from SNP 92014 to 92614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,874 DEBUG Processing 188/726 atomic regions from SNP 56236 to 56836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,898 DEBUG Processing 722/734 atomic regions from SNP 216553 to 217153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,116 DEBUG Processing 308/666 atomic regions from SNP 92314 to 92914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,116 DEBUG Processing 189/726 atomic regions from SNP 56536 to 57136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,136 DEBUG Processing 723/734 atomic regions from SNP 216853 to 217453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,353 DEBUG Processing 190/726 atomic regions from SNP 56836 to 57436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,370 DEBUG Processing 309/666 atomic regions from SNP 92614 to 93214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,373 DEBUG Processing 724/734 atomic regions from SNP 217153 to 217753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,595 DEBUG Processing 191/726 atomic regions from SNP 57136 to 57736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,615 DEBUG Processing 310/666 atomic regions from SNP 92914 to 93514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,619 DEBUG Processing 725/734 atomic regions from SNP 217453 to 218053 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,833 DEBUG Processing 192/726 atomic regions from SNP 57436 to 58036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,869 DEBUG Processing 726/734 atomic regions from SNP 217753 to 218353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,872 DEBUG Processing 311/666 atomic regions from SNP 93214 to 93814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,077 DEBUG Processing 193/726 atomic regions from SNP 57736 to 58336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,107 DEBUG Processing 727/734 atomic regions from SNP 218053 to 218653 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,129 DEBUG Processing 312/666 atomic regions from SNP 93514 to 94114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,320 DEBUG Processing 194/726 atomic regions from SNP 58036 to 58636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,351 DEBUG Processing 728/734 atomic regions from SNP 218353 to 218953 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,377 DEBUG Processing 313/666 atomic regions from SNP 93814 to 94414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,569 DEBUG Processing 195/726 atomic regions from SNP 58336 to 58936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,599 DEBUG Processing 729/734 atomic regions from SNP 218653 to 219253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,613 DEBUG Processing 314/666 atomic regions from SNP 94114 to 94714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,815 DEBUG Processing 196/726 atomic regions from SNP 58636 to 59236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,847 DEBUG Processing 730/734 atomic regions from SNP 218953 to 219553 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,853 DEBUG Processing 315/666 atomic regions from SNP 94414 to 95014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,062 DEBUG Processing 197/726 atomic regions from SNP 58936 to 59536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,096 DEBUG Processing 316/666 atomic regions from SNP 94714 to 95314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,101 DEBUG Processing 731/734 atomic regions from SNP 219253 to 219853 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,307 DEBUG Processing 198/726 atomic regions from SNP 59236 to 59836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,337 DEBUG Processing 317/666 atomic regions from SNP 95014 to 95614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,351 DEBUG Processing 732/734 atomic regions from SNP 219553 to 220153 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,552 DEBUG Processing 199/726 atomic regions from SNP 59536 to 60136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,574 DEBUG Processing 318/666 atomic regions from SNP 95314 to 95914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,596 DEBUG Processing 733/734 atomic regions from SNP 219853 to 220453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,787 DEBUG Processing 200/726 atomic regions from SNP 59836 to 60436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,801 DEBUG Processing 319/666 atomic regions from SNP 95614 to 96214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,836 DEBUG Processing 734/734 atomic regions from SNP 220153 to 220753 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,982 DEBUG Unique SNPs positions in subchromosome 1: 220754 2025-01-31 09:52:11,021 DEBUG Processing 201/726 atomic regions from SNP 60136 to 60736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,035 DEBUG Processing 320/666 atomic regions from SNP 95914 to 96514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,252 DEBUG Processing 202/726 atomic regions from SNP 60436 to 61036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,264 DEBUG Processing 321/666 atomic regions from SNP 96214 to 96814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,481 DEBUG Processing 203/726 atomic regions from SNP 60736 to 61336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,491 DEBUG Processing 322/666 atomic regions from SNP 96514 to 97114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,709 DEBUG Processing 204/726 atomic regions from SNP 61036 to 61636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,732 DEBUG Processing 323/666 atomic regions from SNP 96814 to 97414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,935 DEBUG Processing 205/726 atomic regions from SNP 61336 to 61936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,978 DEBUG Processing 324/666 atomic regions from SNP 97114 to 97714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,156 DEBUG Processing 206/726 atomic regions from SNP 61636 to 62236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,228 DEBUG Processing 325/666 atomic regions from SNP 97414 to 98014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,387 DEBUG Processing 207/726 atomic regions from SNP 61936 to 62536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,462 DEBUG Processing 326/666 atomic regions from SNP 97714 to 98314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,619 DEBUG Processing 208/726 atomic regions from SNP 62236 to 62836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,686 DEBUG Processing 327/666 atomic regions from SNP 98014 to 98614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,856 DEBUG Processing 209/726 atomic regions from SNP 62536 to 63136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,920 DEBUG Processing 328/666 atomic regions from SNP 98314 to 98914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,099 DEBUG Processing 210/726 atomic regions from SNP 62836 to 63436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,153 DEBUG Processing 329/666 atomic regions from SNP 98614 to 99214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,345 DEBUG Processing 211/726 atomic regions from SNP 63136 to 63736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,394 DEBUG Processing 330/666 atomic regions from SNP 98914 to 99514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,584 DEBUG Processing 212/726 atomic regions from SNP 63436 to 64036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,636 DEBUG Processing 331/666 atomic regions from SNP 99214 to 99814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,816 DEBUG Processing 213/726 atomic regions from SNP 63736 to 64336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,874 DEBUG Processing 332/666 atomic regions from SNP 99514 to 100114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,041 DEBUG Processing 214/726 atomic regions from SNP 64036 to 64636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,108 DEBUG Processing 333/666 atomic regions from SNP 99814 to 100414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,269 DEBUG Processing 215/726 atomic regions from SNP 64336 to 64936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,340 DEBUG Processing 334/666 atomic regions from SNP 100114 to 100714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,501 DEBUG Processing 216/726 atomic regions from SNP 64636 to 65236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,571 DEBUG Processing 335/666 atomic regions from SNP 100414 to 101014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,731 DEBUG Processing 217/726 atomic regions from SNP 64936 to 65536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,805 DEBUG Processing 336/666 atomic regions from SNP 100714 to 101314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,963 DEBUG Processing 218/726 atomic regions from SNP 65236 to 65836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,030 DEBUG Processing 337/666 atomic regions from SNP 101014 to 101614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,193 DEBUG Processing 219/726 atomic regions from SNP 65536 to 66136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,256 DEBUG Processing 338/666 atomic regions from SNP 101314 to 101914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,440 DEBUG Processing 220/726 atomic regions from SNP 65836 to 66436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,486 DEBUG Processing 339/666 atomic regions from SNP 101614 to 102214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,674 DEBUG Processing 221/726 atomic regions from SNP 66136 to 66736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,716 DEBUG Processing 340/666 atomic regions from SNP 101914 to 102514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,908 DEBUG Processing 222/726 atomic regions from SNP 66436 to 67036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,947 DEBUG Processing 341/666 atomic regions from SNP 102214 to 102814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,133 DEBUG Processing 223/726 atomic regions from SNP 66736 to 67336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,173 DEBUG Processing 342/666 atomic regions from SNP 102514 to 103114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,362 DEBUG Processing 224/726 atomic regions from SNP 67036 to 67636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,399 DEBUG Processing 343/666 atomic regions from SNP 102814 to 103414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,590 DEBUG Processing 225/726 atomic regions from SNP 67336 to 67936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,620 DEBUG Processing 344/666 atomic regions from SNP 103114 to 103714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,820 DEBUG Processing 226/726 atomic regions from SNP 67636 to 68236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,842 DEBUG Processing 345/666 atomic regions from SNP 103414 to 104014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,047 DEBUG Processing 227/726 atomic regions from SNP 67936 to 68536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,063 DEBUG Processing 346/666 atomic regions from SNP 103714 to 104314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,218 DEBUG Subchromosome time: 220.28625713288784, subchromosome SNPs: 212306 2025-01-31 09:52:17,219 DEBUG Estimated BADs: [1.48, 4.43, 0.49, 2.95, 0.49, 5.91, 0.74, 4.43, 0.74, 5.91, 0.00, 0.74, 4.43, 0.74, 4.43, 0.37, 1.48, 0.74, 5.91, 2.95, 0.49, 1.48, 0.49, 1.48, 0.74, 1.48, 0.37, 1.48, 4.43, 1.48, 0.30, 1.48, 0.74, 0.21, 1.48, 2.95, 1.48, 0.49, 2.95, 0.49, 1.48, 4.43, 1.48, 5.91, 2.95] SNP counts: [1942, 1221, 824, 2585, 3981, 348, 3339, 2432, 2344, 2024, 39, 1511, 2987, 1314, 7902, 1731, 8513, 8347, 2805, 2897, 1798, 3033, 22158, 9403, 8190, 5308, 2088, 3737, 1092, 8562, 6123, 3594, 4803, 2982, 6356, 6781, 1844, 3362, 863, 3589, 33028, 4692, 22607, 1505, 6801] SNP IDs counts: [1942, 1221, 824, 2585, 3981, 348, 3339, 2432, 2344, 2024, 39, 1511, 2987, 1314, 7902, 1731, 8513, 8347, 2805, 2897, 1798, 3033, 22158, 9403, 8190, 5308, 2088, 3737, 1092, 8562, 6123, 3594, 4803, 2982, 6356, 6781, 1844, 3362, 863, 3589, 33028, 4692, 22607, 1505, 6801] Critical gap: 667082bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.44Mbp, 5.11Mbp, 5.69Mbp, 7.30Mbp, 12.88Mbp, 13.06Mbp, 15.91Mbp, 17.23Mbp, 18.99Mbp, 20.07Mbp[0.71Mbp], 21.44Mbp[1.34Mbp], 24.30Mbp, 25.93Mbp, 26.80Mbp, 31.16Mbp, 33.71Mbp, 38.27Mbp, 44.22Mbp, 45.68Mbp, 47.20Mbp, 48.38Mbp, 50.03Mbp, 63.85Mbp, 68.94Mbp, 73.52Mbp, 76.49Mbp, 77.69Mbp, 79.69Mbp, 80.25Mbp, 84.89Mbp, 88.61Mbp, 90.65Mbp, 93.38Mbp, 95.20Mbp, 98.66Mbp, 102.21Mbp, 103.30Mbp, 105.40Mbp, 106.25Mbp, 108.47Mbp, 126.26Mbp, 128.75Mbp, 140.90Mbp, 141.68Mbp, 145.44Mbp] 2025-01-31 09:52:17,219 DEBUG chr7 time: 220.2869091592729 s 2025-01-31 09:52:17,272 DEBUG Processing 228/726 atomic regions from SNP 68236 to 68836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,281 DEBUG Processing 347/666 atomic regions from SNP 104014 to 104614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,375 DEBUG chr7: Fitting background model for 44 segments 2025-01-31 09:52:17,501 DEBUG Processing 348/666 atomic regions from SNP 104314 to 104914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,505 DEBUG Processing 229/726 atomic regions from SNP 68536 to 69136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,737 DEBUG Processing 230/726 atomic regions from SNP 68836 to 69436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,738 DEBUG Processing 349/666 atomic regions from SNP 104614 to 105214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,966 DEBUG Processing 231/726 atomic regions from SNP 69136 to 69736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,976 DEBUG Processing 350/666 atomic regions from SNP 104914 to 105514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,107 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:52:18,109 DEBUG chr11: Signal quantile: 0.988. signal threshold: 13. Best RMSEA: 0.012 2025-01-31 09:52:18,199 DEBUG Processing 232/726 atomic regions from SNP 69436 to 70036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,206 DEBUG Processing 351/666 atomic regions from SNP 105214 to 105814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,434 DEBUG Processing 233/726 atomic regions from SNP 69736 to 70336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,455 DEBUG Processing 352/666 atomic regions from SNP 105514 to 106114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,676 DEBUG Processing 234/726 atomic regions from SNP 70036 to 70636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,692 DEBUG Processing 353/666 atomic regions from SNP 105814 to 106414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,927 DEBUG Processing 235/726 atomic regions from SNP 70336 to 70936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,942 DEBUG Processing 354/666 atomic regions from SNP 106114 to 106714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,196 DEBUG Processing 236/726 atomic regions from SNP 70636 to 71236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,202 DEBUG Processing 355/666 atomic regions from SNP 106414 to 107014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,446 DEBUG Processing 356/666 atomic regions from SNP 106714 to 107314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,448 DEBUG Processing 237/726 atomic regions from SNP 70936 to 71536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,684 DEBUG Processing 357/666 atomic regions from SNP 107014 to 107614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,695 DEBUG Processing 238/726 atomic regions from SNP 71236 to 71836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,914 DEBUG Processing 358/666 atomic regions from SNP 107314 to 107914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,945 DEBUG Processing 239/726 atomic regions from SNP 71536 to 72136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,142 DEBUG Processing 359/666 atomic regions from SNP 107614 to 108214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,185 DEBUG Processing 240/726 atomic regions from SNP 71836 to 72436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,375 DEBUG Processing 360/666 atomic regions from SNP 107914 to 108514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,381 DEBUG chr11 total SNP count: 216842 2025-01-31 09:52:20,381 DEBUG chr11 length: 122082543 2025-01-31 09:52:20,381 DEBUG ----------------------------------------- 2025-01-31 09:52:20,381 INFO Processing SNPs in chr11 2025-01-31 09:52:20,450 DEBUG Processing 241/726 atomic regions from SNP 72136 to 72736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,598 DEBUG Processing 361/666 atomic regions from SNP 108214 to 108814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,600 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 216842)] 2025-01-31 09:52:20,717 DEBUG Processing 242/726 atomic regions from SNP 72436 to 73036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,751 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:20,826 DEBUG Processing 362/666 atomic regions from SNP 108514 to 109114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,993 DEBUG Processing 243/726 atomic regions from SNP 72736 to 73336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,047 DEBUG Processing 363/666 atomic regions from SNP 108814 to 109414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,259 DEBUG Processing 244/726 atomic regions from SNP 73036 to 73636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,275 DEBUG Processing 364/666 atomic regions from SNP 109114 to 109714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,506 DEBUG Processing 365/666 atomic regions from SNP 109414 to 110014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,525 DEBUG Processing 245/726 atomic regions from SNP 73336 to 73936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,726 DEBUG Processing 366/666 atomic regions from SNP 109714 to 110314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,756 DEBUG Processing 246/726 atomic regions from SNP 73636 to 74236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,950 DEBUG Processing 367/666 atomic regions from SNP 110014 to 110614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,982 DEBUG Processing 247/726 atomic regions from SNP 73936 to 74536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,177 DEBUG Processing 368/666 atomic regions from SNP 110314 to 110914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,212 DEBUG Processing 248/726 atomic regions from SNP 74236 to 74836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,398 DEBUG Processing 369/666 atomic regions from SNP 110614 to 111214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,442 DEBUG Processing 249/726 atomic regions from SNP 74536 to 75136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,624 DEBUG Processing 370/666 atomic regions from SNP 110914 to 111514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,674 DEBUG Processing 250/726 atomic regions from SNP 74836 to 75436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,850 DEBUG Processing 371/666 atomic regions from SNP 111214 to 111814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,905 DEBUG Processing 251/726 atomic regions from SNP 75136 to 75736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,086 DEBUG Processing 372/666 atomic regions from SNP 111514 to 112114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,152 DEBUG Processing 252/726 atomic regions from SNP 75436 to 76036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,322 DEBUG Processing 373/666 atomic regions from SNP 111814 to 112414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,394 DEBUG Processing 253/726 atomic regions from SNP 75736 to 76336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,544 DEBUG Processing 374/666 atomic regions from SNP 112114 to 112714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,629 DEBUG Processing 254/726 atomic regions from SNP 76036 to 76636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,766 DEBUG Processing 375/666 atomic regions from SNP 112414 to 113014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,867 DEBUG Processing 255/726 atomic regions from SNP 76336 to 76936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,998 DEBUG Processing 376/666 atomic regions from SNP 112714 to 113314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,145 DEBUG Processing 256/726 atomic regions from SNP 76636 to 77236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,228 DEBUG Processing 377/666 atomic regions from SNP 113014 to 113614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,376 DEBUG Subchromosome time: 223.46654587611556, subchromosome SNPs: 220754 2025-01-31 09:52:24,376 DEBUG Estimated BADs: [3.35, 0.28, 1.68, 3.35, 1.68, 0.56, 1.68, 0.56, 1.68, 0.56, 1.68, 0.34, 0.84, 10.06, 3.35, 1.68, 5.03, 1.68, 3.35, 0.34, 1.68, 3.35, 1.68, 3.35, 8.39, 3.35] SNP counts: [2736, 3664, 8129, 3373, 5368, 2394, 17764, 5459, 9008, 10494, 9945, 6914, 27688, 2201, 2513, 19428, 2617, 16984, 4455, 10212, 4919, 4027, 17236, 4710, 8713, 9803] SNP IDs counts: [2736, 3664, 8129, 3373, 5368, 2394, 17764, 5459, 9008, 10494, 9945, 6914, 27688, 2201, 2513, 19428, 2617, 16984, 4455, 10212, 4919, 4027, 17236, 4710, 8713, 9803] Critical gap: 617402bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 4.68Mbp, 7.02Mbp, 11.50Mbp, 13.28Mbp, 16.30Mbp, 17.66Mbp, 29.23Mbp, 32.40Mbp, 37.36Mbp, 43.64Mbp, 49.11Mbp, 53.22Mbp, 69.77Mbp, 70.92Mbp, 72.47Mbp, 83.59Mbp, 84.96Mbp, 94.11Mbp, 96.52Mbp, 102.51Mbp, 105.25Mbp, 107.38Mbp, 116.86Mbp, 119.34Mbp, 123.98Mbp, 129.40Mbp] 2025-01-31 09:52:24,376 DEBUG chr8 time: 223.46717876940966 s 2025-01-31 09:52:24,380 DEBUG Processing 257/726 atomic regions from SNP 76936 to 77536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,454 DEBUG Processing 378/666 atomic regions from SNP 113314 to 113914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,520 DEBUG chr8: Fitting background model for 26 segments 2025-01-31 09:52:24,619 DEBUG Processing 258/726 atomic regions from SNP 77236 to 77836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,679 DEBUG Processing 379/666 atomic regions from SNP 113614 to 114214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,847 DEBUG Processing 259/726 atomic regions from SNP 77536 to 78136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,905 DEBUG Processing 380/666 atomic regions from SNP 113914 to 114514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,074 DEBUG Processing 260/726 atomic regions from SNP 77836 to 78436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,134 DEBUG Processing 381/666 atomic regions from SNP 114214 to 114814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,306 DEBUG Processing 261/726 atomic regions from SNP 78136 to 78736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,366 DEBUG Processing 382/666 atomic regions from SNP 114514 to 115114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,535 DEBUG Processing 262/726 atomic regions from SNP 78436 to 79036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,594 DEBUG Processing 383/666 atomic regions from SNP 114814 to 115414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,766 DEBUG Processing 263/726 atomic regions from SNP 78736 to 79336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,817 DEBUG Processing 384/666 atomic regions from SNP 115114 to 115714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,995 DEBUG Processing 264/726 atomic regions from SNP 79036 to 79636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,041 DEBUG Processing 385/666 atomic regions from SNP 115414 to 116014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,228 DEBUG Processing 265/726 atomic regions from SNP 79336 to 79936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,281 DEBUG Processing 386/666 atomic regions from SNP 115714 to 116314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,457 DEBUG Processing 266/726 atomic regions from SNP 79636 to 80236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,527 DEBUG Processing 387/666 atomic regions from SNP 116014 to 116614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,691 DEBUG Processing 267/726 atomic regions from SNP 79936 to 80536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,759 DEBUG Processing 388/666 atomic regions from SNP 116314 to 116914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,921 DEBUG Processing 268/726 atomic regions from SNP 80236 to 80836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,998 DEBUG Processing 389/666 atomic regions from SNP 116614 to 117214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,148 DEBUG Processing 269/726 atomic regions from SNP 80536 to 81136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,231 DEBUG Processing 390/666 atomic regions from SNP 116914 to 117514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,374 DEBUG Processing 270/726 atomic regions from SNP 80836 to 81436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,468 DEBUG Processing 391/666 atomic regions from SNP 117214 to 117814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,606 DEBUG Processing 271/726 atomic regions from SNP 81136 to 81736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,692 DEBUG Processing 392/666 atomic regions from SNP 117514 to 118114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,843 DEBUG Processing 272/726 atomic regions from SNP 81436 to 82036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,915 DEBUG Processing 393/666 atomic regions from SNP 117814 to 118414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,073 DEBUG Processing 273/726 atomic regions from SNP 81736 to 82336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,137 DEBUG Processing 394/666 atomic regions from SNP 118114 to 118714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,301 DEBUG Processing 274/726 atomic regions from SNP 82036 to 82636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,360 DEBUG Processing 395/666 atomic regions from SNP 118414 to 119014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,537 DEBUG Processing 275/726 atomic regions from SNP 82336 to 82936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,588 DEBUG Processing 396/666 atomic regions from SNP 118714 to 119314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,772 DEBUG Processing 276/726 atomic regions from SNP 82636 to 83236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,821 DEBUG Processing 397/666 atomic regions from SNP 119014 to 119614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,002 DEBUG Processing 277/726 atomic regions from SNP 82936 to 83536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,050 DEBUG Processing 398/666 atomic regions from SNP 119314 to 119914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,232 DEBUG Processing 278/726 atomic regions from SNP 83236 to 83836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,277 DEBUG Processing 399/666 atomic regions from SNP 119614 to 120214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,464 DEBUG Processing 279/726 atomic regions from SNP 83536 to 84136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,500 DEBUG Processing 400/666 atomic regions from SNP 119914 to 120514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,693 DEBUG Processing 280/726 atomic regions from SNP 83836 to 84436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,718 DEBUG Processing 401/666 atomic regions from SNP 120214 to 120814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,930 DEBUG Processing 281/726 atomic regions from SNP 84136 to 84736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,946 DEBUG Processing 402/666 atomic regions from SNP 120514 to 121114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,165 DEBUG Processing 282/726 atomic regions from SNP 84436 to 85036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,171 DEBUG Processing 403/666 atomic regions from SNP 120814 to 121414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,399 DEBUG Processing 404/666 atomic regions from SNP 121114 to 121714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,409 DEBUG Processing 283/726 atomic regions from SNP 84736 to 85336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,629 DEBUG Processing 405/666 atomic regions from SNP 121414 to 122014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,654 DEBUG Processing 284/726 atomic regions from SNP 85036 to 85636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,860 DEBUG Processing 406/666 atomic regions from SNP 121714 to 122314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,889 DEBUG Processing 285/726 atomic regions from SNP 85336 to 85936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,088 DEBUG Processing 407/666 atomic regions from SNP 122014 to 122614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,124 DEBUG Processing 286/726 atomic regions from SNP 85636 to 86236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,336 DEBUG Processing 408/666 atomic regions from SNP 122314 to 122914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,364 DEBUG Processing 287/726 atomic regions from SNP 85936 to 86536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,590 DEBUG Processing 409/666 atomic regions from SNP 122614 to 123214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,608 DEBUG Processing 288/726 atomic regions from SNP 86236 to 86836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,837 DEBUG Processing 410/666 atomic regions from SNP 122914 to 123514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,849 DEBUG Processing 289/726 atomic regions from SNP 86536 to 87136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,077 DEBUG Processing 411/666 atomic regions from SNP 123214 to 123814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,095 DEBUG Processing 290/726 atomic regions from SNP 86836 to 87436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,303 DEBUG Processing 412/666 atomic regions from SNP 123514 to 124114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,334 DEBUG Processing 291/726 atomic regions from SNP 87136 to 87736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,531 DEBUG Processing 413/666 atomic regions from SNP 123814 to 124414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,573 DEBUG Processing 292/726 atomic regions from SNP 87436 to 88036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,764 DEBUG Processing 414/666 atomic regions from SNP 124114 to 124714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,824 DEBUG Processing 293/726 atomic regions from SNP 87736 to 88336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,996 DEBUG Processing 415/666 atomic regions from SNP 124414 to 125014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,063 DEBUG Processing 294/726 atomic regions from SNP 88036 to 88636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,242 DEBUG Processing 416/666 atomic regions from SNP 124714 to 125314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,323 DEBUG Processing 295/726 atomic regions from SNP 88336 to 88936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,476 DEBUG Processing 417/666 atomic regions from SNP 125014 to 125614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,572 DEBUG Processing 296/726 atomic regions from SNP 88636 to 89236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,697 DEBUG Processing 418/666 atomic regions from SNP 125314 to 125914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,807 DEBUG Processing 297/726 atomic regions from SNP 88936 to 89536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,912 DEBUG Processing 419/666 atomic regions from SNP 125614 to 126214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,037 DEBUG Processing 298/726 atomic regions from SNP 89236 to 89836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,137 DEBUG Processing 420/666 atomic regions from SNP 125914 to 126514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,268 DEBUG Processing 299/726 atomic regions from SNP 89536 to 90136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,368 DEBUG Processing 421/666 atomic regions from SNP 126214 to 126814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,499 DEBUG Processing 300/726 atomic regions from SNP 89836 to 90436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,604 DEBUG Processing 422/666 atomic regions from SNP 126514 to 127114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,741 DEBUG Processing 301/726 atomic regions from SNP 90136 to 90736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,849 DEBUG Processing 423/666 atomic regions from SNP 126814 to 127414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,977 DEBUG Processing 302/726 atomic regions from SNP 90436 to 91036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,087 DEBUG Processing 424/666 atomic regions from SNP 127114 to 127714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,217 DEBUG Processing 303/726 atomic regions from SNP 90736 to 91336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,329 DEBUG Processing 425/666 atomic regions from SNP 127414 to 128014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,448 DEBUG Processing 304/726 atomic regions from SNP 91036 to 91636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,570 DEBUG Processing 426/666 atomic regions from SNP 127714 to 128314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,673 DEBUG Processing 305/726 atomic regions from SNP 91336 to 91936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,807 DEBUG Processing 427/666 atomic regions from SNP 128014 to 128614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,922 DEBUG Processing 306/726 atomic regions from SNP 91636 to 92236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,041 DEBUG Processing 428/666 atomic regions from SNP 128314 to 128914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,173 DEBUG Processing 307/726 atomic regions from SNP 91936 to 92536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,274 DEBUG Processing 429/666 atomic regions from SNP 128614 to 129214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,413 DEBUG Processing 308/726 atomic regions from SNP 92236 to 92836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,505 DEBUG Processing 430/666 atomic regions from SNP 128914 to 129514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,646 DEBUG Processing 309/726 atomic regions from SNP 92536 to 93136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,729 DEBUG Processing 431/666 atomic regions from SNP 129214 to 129814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,882 DEBUG Processing 310/726 atomic regions from SNP 92836 to 93436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,956 DEBUG Processing 432/666 atomic regions from SNP 129514 to 130114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,117 DEBUG Processing 311/726 atomic regions from SNP 93136 to 93736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,184 DEBUG Processing 433/666 atomic regions from SNP 129814 to 130414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,227 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:52:37,356 DEBUG Processing 312/726 atomic regions from SNP 93436 to 94036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,421 DEBUG Processing 434/666 atomic regions from SNP 130114 to 130714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,597 DEBUG Processing 313/726 atomic regions from SNP 93736 to 94336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,666 DEBUG Processing 435/666 atomic regions from SNP 130414 to 131014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,840 DEBUG Processing 314/726 atomic regions from SNP 94036 to 94636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,909 DEBUG Processing 436/666 atomic regions from SNP 130714 to 131314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,080 DEBUG Processing 315/726 atomic regions from SNP 94336 to 94936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,142 DEBUG Processing 437/666 atomic regions from SNP 131014 to 131614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,326 DEBUG Processing 316/726 atomic regions from SNP 94636 to 95236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,380 DEBUG Processing 438/666 atomic regions from SNP 131314 to 131914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,566 DEBUG Processing 317/726 atomic regions from SNP 94936 to 95536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,611 DEBUG Processing 439/666 atomic regions from SNP 131614 to 132214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,800 DEBUG Processing 318/726 atomic regions from SNP 95236 to 95836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,834 DEBUG Processing 440/666 atomic regions from SNP 131914 to 132514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,049 DEBUG Processing 319/726 atomic regions from SNP 95536 to 96136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,060 DEBUG Processing 441/666 atomic regions from SNP 132214 to 132814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,292 DEBUG Processing 442/666 atomic regions from SNP 132514 to 133114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,305 DEBUG Processing 320/726 atomic regions from SNP 95836 to 96436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,526 DEBUG Processing 443/666 atomic regions from SNP 132814 to 133414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,572 DEBUG Processing 321/726 atomic regions from SNP 96136 to 96736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,762 DEBUG Processing 444/666 atomic regions from SNP 133114 to 133714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,841 DEBUG Processing 322/726 atomic regions from SNP 96436 to 97036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,996 DEBUG Processing 445/666 atomic regions from SNP 133414 to 134014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,095 DEBUG Processing 323/726 atomic regions from SNP 96736 to 97336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,223 DEBUG Processing 446/666 atomic regions from SNP 133714 to 134314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,347 DEBUG Processing 324/726 atomic regions from SNP 97036 to 97636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,446 DEBUG Processing 447/666 atomic regions from SNP 134014 to 134614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,621 DEBUG Processing 325/726 atomic regions from SNP 97336 to 97936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,675 DEBUG Processing 448/666 atomic regions from SNP 134314 to 134914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,895 DEBUG Processing 326/726 atomic regions from SNP 97636 to 98236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,904 DEBUG Processing 449/666 atomic regions from SNP 134614 to 135214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,137 DEBUG Processing 450/666 atomic regions from SNP 134914 to 135514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,154 DEBUG Processing 327/726 atomic regions from SNP 97936 to 98536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,372 DEBUG Processing 451/666 atomic regions from SNP 135214 to 135814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,408 DEBUG Processing 328/726 atomic regions from SNP 98236 to 98836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,619 DEBUG Processing 452/666 atomic regions from SNP 135514 to 136114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,677 DEBUG Processing 329/726 atomic regions from SNP 98536 to 99136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,854 DEBUG Processing 453/666 atomic regions from SNP 135814 to 136414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,940 DEBUG Processing 330/726 atomic regions from SNP 98836 to 99436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,088 DEBUG Processing 454/666 atomic regions from SNP 136114 to 136714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,195 DEBUG Processing 331/726 atomic regions from SNP 99136 to 99736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,319 DEBUG Processing 455/666 atomic regions from SNP 136414 to 137014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,444 DEBUG Processing 332/726 atomic regions from SNP 99436 to 100036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,545 DEBUG Processing 456/666 atomic regions from SNP 136714 to 137314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,687 DEBUG Processing 333/726 atomic regions from SNP 99736 to 100336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,775 DEBUG Processing 457/666 atomic regions from SNP 137014 to 137614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,925 DEBUG Processing 334/726 atomic regions from SNP 100036 to 100636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,007 DEBUG Processing 458/666 atomic regions from SNP 137314 to 137914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,165 DEBUG Processing 335/726 atomic regions from SNP 100336 to 100936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,236 DEBUG Processing 459/666 atomic regions from SNP 137614 to 138214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,403 DEBUG Processing 336/726 atomic regions from SNP 100636 to 101236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,466 DEBUG Processing 460/666 atomic regions from SNP 137914 to 138514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,650 DEBUG Processing 337/726 atomic regions from SNP 100936 to 101536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,696 DEBUG Processing 461/666 atomic regions from SNP 138214 to 138814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,923 DEBUG Processing 338/726 atomic regions from SNP 101236 to 101836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,927 DEBUG Processing 462/666 atomic regions from SNP 138514 to 139114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,162 DEBUG Processing 463/666 atomic regions from SNP 138814 to 139414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,174 DEBUG Processing 339/726 atomic regions from SNP 101536 to 102136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,398 DEBUG Processing 464/666 atomic regions from SNP 139114 to 139714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,417 DEBUG Processing 340/726 atomic regions from SNP 101836 to 102436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,631 DEBUG Processing 465/666 atomic regions from SNP 139414 to 140014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,655 DEBUG Processing 341/726 atomic regions from SNP 102136 to 102736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,864 DEBUG Processing 466/666 atomic regions from SNP 139714 to 140314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,895 DEBUG Processing 342/726 atomic regions from SNP 102436 to 103036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,094 DEBUG Processing 467/666 atomic regions from SNP 140014 to 140614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,135 DEBUG Processing 343/726 atomic regions from SNP 102736 to 103336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,330 DEBUG Processing 468/666 atomic regions from SNP 140314 to 140914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,376 DEBUG Processing 344/726 atomic regions from SNP 103036 to 103636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,567 DEBUG Processing 469/666 atomic regions from SNP 140614 to 141214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,613 DEBUG Processing 345/726 atomic regions from SNP 103336 to 103936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,797 DEBUG Processing 470/666 atomic regions from SNP 140914 to 141514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,850 DEBUG Processing 346/726 atomic regions from SNP 103636 to 104236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,031 DEBUG Processing 471/666 atomic regions from SNP 141214 to 141814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,087 DEBUG Processing 347/726 atomic regions from SNP 103936 to 104536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,263 DEBUG Processing 472/666 atomic regions from SNP 141514 to 142114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,333 DEBUG Processing 348/726 atomic regions from SNP 104236 to 104836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,495 DEBUG Processing 473/666 atomic regions from SNP 141814 to 142414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,589 DEBUG Processing 349/726 atomic regions from SNP 104536 to 105136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,728 DEBUG Processing 474/666 atomic regions from SNP 142114 to 142714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,830 DEBUG Processing 350/726 atomic regions from SNP 104836 to 105436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,962 DEBUG Processing 475/666 atomic regions from SNP 142414 to 143014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,071 DEBUG Processing 351/726 atomic regions from SNP 105136 to 105736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,197 DEBUG Processing 476/666 atomic regions from SNP 142714 to 143314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,325 DEBUG Processing 352/726 atomic regions from SNP 105436 to 106036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,433 DEBUG Processing 477/666 atomic regions from SNP 143014 to 143614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,574 DEBUG Processing 353/726 atomic regions from SNP 105736 to 106336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,664 DEBUG Processing 478/666 atomic regions from SNP 143314 to 143914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,814 DEBUG Processing 354/726 atomic regions from SNP 106036 to 106636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,899 DEBUG Processing 479/666 atomic regions from SNP 143614 to 144214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,920 DEBUG Segmenting atomic regions: 2025-01-31 09:52:48,017 DEBUG Processing 1/721 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,068 DEBUG Processing 355/726 atomic regions from SNP 106336 to 106936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,131 DEBUG Processing 480/666 atomic regions from SNP 143914 to 144514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,256 DEBUG Processing 2/721 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,324 DEBUG Processing 356/726 atomic regions from SNP 106636 to 107236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,360 DEBUG Processing 481/666 atomic regions from SNP 144214 to 144814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,491 DEBUG Processing 3/721 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,568 DEBUG Processing 357/726 atomic regions from SNP 106936 to 107536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,589 DEBUG Processing 482/666 atomic regions from SNP 144514 to 145114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,719 DEBUG Processing 4/721 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,826 DEBUG Processing 483/666 atomic regions from SNP 144814 to 145414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,834 DEBUG Processing 358/726 atomic regions from SNP 107236 to 107836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,952 DEBUG Processing 5/721 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,062 DEBUG Processing 484/666 atomic regions from SNP 145114 to 145714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,079 DEBUG Processing 359/726 atomic regions from SNP 107536 to 108136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,194 DEBUG Processing 6/721 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,302 DEBUG Processing 485/666 atomic regions from SNP 145414 to 146014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,332 DEBUG Processing 360/726 atomic regions from SNP 107836 to 108436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,455 DEBUG Processing 7/721 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,535 DEBUG Processing 486/666 atomic regions from SNP 145714 to 146314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,566 DEBUG Processing 361/726 atomic regions from SNP 108136 to 108736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,694 DEBUG Processing 8/721 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,767 DEBUG Processing 487/666 atomic regions from SNP 146014 to 146614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,802 DEBUG Processing 362/726 atomic regions from SNP 108436 to 109036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,914 DEBUG Processing 9/721 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,000 DEBUG Processing 488/666 atomic regions from SNP 146314 to 146914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,049 DEBUG Processing 363/726 atomic regions from SNP 108736 to 109336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,130 DEBUG Processing 10/721 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,222 DEBUG Processing 489/666 atomic regions from SNP 146614 to 147214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,301 DEBUG Processing 364/726 atomic regions from SNP 109036 to 109636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,356 DEBUG Processing 11/721 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,448 DEBUG Processing 490/666 atomic regions from SNP 146914 to 147514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,565 DEBUG Processing 365/726 atomic regions from SNP 109336 to 109936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,602 DEBUG Processing 12/721 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,677 DEBUG Processing 491/666 atomic regions from SNP 147214 to 147814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,833 DEBUG Processing 366/726 atomic regions from SNP 109636 to 110236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,860 DEBUG Processing 13/721 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,905 DEBUG Processing 492/666 atomic regions from SNP 147514 to 148114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,097 DEBUG Processing 367/726 atomic regions from SNP 109936 to 110536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,117 DEBUG Processing 14/721 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,146 DEBUG Processing 493/666 atomic regions from SNP 147814 to 148414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,343 DEBUG Processing 15/721 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,356 DEBUG Processing 368/726 atomic regions from SNP 110236 to 110836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,377 DEBUG Processing 494/666 atomic regions from SNP 148114 to 148714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,574 DEBUG Processing 16/721 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,607 DEBUG Processing 495/666 atomic regions from SNP 148414 to 149014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,612 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:52:51,613 DEBUG Processing 369/726 atomic regions from SNP 110536 to 111136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,614 DEBUG chr13: Signal quantile: 0.993. signal threshold: 14. Best RMSEA: 0.013 2025-01-31 09:52:51,798 DEBUG Processing 17/721 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,836 DEBUG Processing 496/666 atomic regions from SNP 148714 to 149314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,873 DEBUG Processing 370/726 atomic regions from SNP 110836 to 111436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,035 DEBUG Processing 18/721 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,061 DEBUG Processing 497/666 atomic regions from SNP 149014 to 149614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,116 DEBUG Processing 371/726 atomic regions from SNP 111136 to 111736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,268 DEBUG Processing 19/721 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,283 DEBUG Processing 498/666 atomic regions from SNP 149314 to 149914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,368 DEBUG Processing 372/726 atomic regions from SNP 111436 to 112036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,498 DEBUG Processing 20/721 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,506 DEBUG Processing 499/666 atomic regions from SNP 149614 to 150214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,634 DEBUG Processing 373/726 atomic regions from SNP 111736 to 112336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,729 DEBUG Processing 500/666 atomic regions from SNP 149914 to 150514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,744 DEBUG Processing 21/721 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,892 DEBUG Processing 374/726 atomic regions from SNP 112036 to 112636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,960 DEBUG Processing 501/666 atomic regions from SNP 150214 to 150814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,994 DEBUG Processing 22/721 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,150 DEBUG Processing 375/726 atomic regions from SNP 112336 to 112936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,194 DEBUG Processing 502/666 atomic regions from SNP 150514 to 151114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,232 DEBUG Processing 23/721 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,408 DEBUG Processing 376/726 atomic regions from SNP 112636 to 113236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,420 DEBUG Processing 503/666 atomic regions from SNP 150814 to 151414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,457 DEBUG Processing 24/721 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,645 DEBUG Processing 377/726 atomic regions from SNP 112936 to 113536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,651 DEBUG Processing 504/666 atomic regions from SNP 151114 to 151714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,681 DEBUG Processing 25/721 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,882 DEBUG Processing 505/666 atomic regions from SNP 151414 to 152014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,886 DEBUG Processing 378/726 atomic regions from SNP 113236 to 113836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,911 DEBUG Processing 26/721 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,992 DEBUG chr13 total SNP count: 204528 2025-01-31 09:52:53,992 DEBUG chr13 length: 120421639 2025-01-31 09:52:53,992 DEBUG ----------------------------------------- 2025-01-31 09:52:53,992 INFO Processing SNPs in chr13 2025-01-31 09:52:54,112 DEBUG Processing 506/666 atomic regions from SNP 151714 to 152314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,143 DEBUG Processing 27/721 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,145 DEBUG Processing 379/726 atomic regions from SNP 113536 to 114136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,201 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 204528)] 2025-01-31 09:52:54,339 DEBUG Processing 507/666 atomic regions from SNP 152014 to 152614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,346 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:54,372 DEBUG Processing 28/721 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,399 DEBUG Processing 380/726 atomic regions from SNP 113836 to 114436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,565 DEBUG Processing 508/666 atomic regions from SNP 152314 to 152914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,595 DEBUG Processing 29/721 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,635 DEBUG Processing 381/726 atomic regions from SNP 114136 to 114736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,796 DEBUG Processing 509/666 atomic regions from SNP 152614 to 153214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,820 DEBUG Processing 30/721 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,881 DEBUG Processing 382/726 atomic regions from SNP 114436 to 115036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,027 DEBUG Processing 510/666 atomic regions from SNP 152914 to 153514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,047 DEBUG Processing 31/721 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,121 DEBUG Processing 383/726 atomic regions from SNP 114736 to 115336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,257 DEBUG Processing 511/666 atomic regions from SNP 153214 to 153814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,274 DEBUG Processing 32/721 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,359 DEBUG Processing 384/726 atomic regions from SNP 115036 to 115636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,486 DEBUG Processing 512/666 atomic regions from SNP 153514 to 154114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,500 DEBUG Processing 33/721 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,612 DEBUG Processing 385/726 atomic regions from SNP 115336 to 115936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,717 DEBUG Processing 513/666 atomic regions from SNP 153814 to 154414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,727 DEBUG Processing 34/721 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,844 DEBUG Processing 386/726 atomic regions from SNP 115636 to 116236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,948 DEBUG Processing 514/666 atomic regions from SNP 154114 to 154714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,957 DEBUG Processing 35/721 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,072 DEBUG Processing 387/726 atomic regions from SNP 115936 to 116536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,183 DEBUG Processing 515/666 atomic regions from SNP 154414 to 155014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,189 DEBUG Processing 36/721 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,299 DEBUG Processing 388/726 atomic regions from SNP 116236 to 116836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,418 DEBUG Processing 516/666 atomic regions from SNP 154714 to 155314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,421 DEBUG Processing 37/721 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,517 DEBUG Processing 389/726 atomic regions from SNP 116536 to 117136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,654 DEBUG Processing 38/721 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,658 DEBUG Processing 517/666 atomic regions from SNP 155014 to 155614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,739 DEBUG Processing 390/726 atomic regions from SNP 116836 to 117436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,889 DEBUG Processing 39/721 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,898 DEBUG Processing 518/666 atomic regions from SNP 155314 to 155914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,967 DEBUG Processing 391/726 atomic regions from SNP 117136 to 117736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,127 DEBUG Processing 40/721 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,138 DEBUG Processing 519/666 atomic regions from SNP 155614 to 156214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,198 DEBUG Processing 392/726 atomic regions from SNP 117436 to 118036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,364 DEBUG Processing 41/721 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,377 DEBUG Processing 520/666 atomic regions from SNP 155914 to 156514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,428 DEBUG Processing 393/726 atomic regions from SNP 117736 to 118336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,597 DEBUG Processing 42/721 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,612 DEBUG Processing 521/666 atomic regions from SNP 156214 to 156814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,676 DEBUG Processing 394/726 atomic regions from SNP 118036 to 118636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,826 DEBUG Processing 43/721 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,843 DEBUG Processing 522/666 atomic regions from SNP 156514 to 157114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,910 DEBUG Processing 395/726 atomic regions from SNP 118336 to 118936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,047 DEBUG Processing 44/721 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,069 DEBUG Processing 523/666 atomic regions from SNP 156814 to 157414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,150 DEBUG Processing 396/726 atomic regions from SNP 118636 to 119236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,268 DEBUG Processing 45/721 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,296 DEBUG Processing 524/666 atomic regions from SNP 157114 to 157714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,391 DEBUG Processing 397/726 atomic regions from SNP 118936 to 119536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,490 DEBUG Processing 46/721 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,514 DEBUG Processing 525/666 atomic regions from SNP 157414 to 158014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,625 DEBUG Processing 398/726 atomic regions from SNP 119236 to 119836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,713 DEBUG Processing 47/721 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,732 DEBUG Processing 526/666 atomic regions from SNP 157714 to 158314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,858 DEBUG Processing 399/726 atomic regions from SNP 119536 to 120136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,941 DEBUG Processing 48/721 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,965 DEBUG Processing 527/666 atomic regions from SNP 158014 to 158614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,116 DEBUG Processing 400/726 atomic regions from SNP 119836 to 120436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,199 DEBUG Processing 49/721 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,218 DEBUG Processing 528/666 atomic regions from SNP 158314 to 158914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,386 DEBUG Processing 401/726 atomic regions from SNP 120136 to 120736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,451 DEBUG Processing 50/721 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,462 DEBUG Processing 529/666 atomic regions from SNP 158614 to 159214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,618 DEBUG Processing 402/726 atomic regions from SNP 120436 to 121036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,692 DEBUG Processing 51/721 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,703 DEBUG Processing 530/666 atomic regions from SNP 158914 to 159514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,850 DEBUG Processing 403/726 atomic regions from SNP 120736 to 121336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,935 DEBUG Processing 52/721 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,941 DEBUG Processing 531/666 atomic regions from SNP 159214 to 159814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,074 DEBUG Processing 404/726 atomic regions from SNP 121036 to 121636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,168 DEBUG Processing 53/721 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,176 DEBUG Processing 532/666 atomic regions from SNP 159514 to 160114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,292 DEBUG Processing 405/726 atomic regions from SNP 121336 to 121936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,398 DEBUG Processing 54/721 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,411 DEBUG Processing 533/666 atomic regions from SNP 159814 to 160414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,518 DEBUG Processing 406/726 atomic regions from SNP 121636 to 122236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,630 DEBUG Processing 55/721 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,648 DEBUG Processing 534/666 atomic regions from SNP 160114 to 160714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,747 DEBUG Processing 407/726 atomic regions from SNP 121936 to 122536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,862 DEBUG Processing 56/721 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,883 DEBUG Processing 535/666 atomic regions from SNP 160414 to 161014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,982 DEBUG Processing 408/726 atomic regions from SNP 122236 to 122836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,085 DEBUG Processing 57/721 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,118 DEBUG Processing 536/666 atomic regions from SNP 160714 to 161314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,231 DEBUG Processing 409/726 atomic regions from SNP 122536 to 123136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,304 DEBUG Processing 58/721 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,346 DEBUG Processing 537/666 atomic regions from SNP 161014 to 161614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,465 DEBUG Processing 410/726 atomic regions from SNP 122836 to 123436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,529 DEBUG Processing 59/721 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,571 DEBUG Processing 538/666 atomic regions from SNP 161314 to 161914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,710 DEBUG Processing 411/726 atomic regions from SNP 123136 to 123736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,770 DEBUG Processing 60/721 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,809 DEBUG Processing 539/666 atomic regions from SNP 161614 to 162214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,938 DEBUG Processing 412/726 atomic regions from SNP 123436 to 124036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,989 DEBUG Processing 61/721 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,024 DEBUG Processing 540/666 atomic regions from SNP 161914 to 162514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,181 DEBUG Processing 413/726 atomic regions from SNP 123736 to 124336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,212 DEBUG Processing 62/721 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,246 DEBUG Processing 541/666 atomic regions from SNP 162214 to 162814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,425 DEBUG Processing 414/726 atomic regions from SNP 124036 to 124636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,440 DEBUG Processing 63/721 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,468 DEBUG Processing 542/666 atomic regions from SNP 162514 to 163114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,654 DEBUG Processing 415/726 atomic regions from SNP 124336 to 124936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,663 DEBUG Processing 64/721 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,709 DEBUG Processing 543/666 atomic regions from SNP 162814 to 163414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,884 DEBUG Processing 416/726 atomic regions from SNP 124636 to 125236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,888 DEBUG Processing 65/721 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,925 DEBUG Processing 544/666 atomic regions from SNP 163114 to 163714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,113 DEBUG Processing 417/726 atomic regions from SNP 124936 to 125536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,114 DEBUG Processing 66/721 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,143 DEBUG Processing 545/666 atomic regions from SNP 163414 to 164014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,342 DEBUG Processing 67/721 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,366 DEBUG Processing 418/726 atomic regions from SNP 125236 to 125836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,367 DEBUG Processing 546/666 atomic regions from SNP 163714 to 164314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,571 DEBUG Processing 68/721 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,589 DEBUG Processing 547/666 atomic regions from SNP 164014 to 164614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,607 DEBUG Processing 419/726 atomic regions from SNP 125536 to 126136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,801 DEBUG Processing 69/721 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,812 DEBUG Processing 548/666 atomic regions from SNP 164314 to 164914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,858 DEBUG Processing 420/726 atomic regions from SNP 125836 to 126436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,029 DEBUG Processing 70/721 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,038 DEBUG Processing 549/666 atomic regions from SNP 164614 to 165214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,089 DEBUG Processing 421/726 atomic regions from SNP 126136 to 126736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,253 DEBUG Processing 71/721 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,264 DEBUG Processing 550/666 atomic regions from SNP 164914 to 165514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,326 DEBUG Processing 422/726 atomic regions from SNP 126436 to 127036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,480 DEBUG Processing 72/721 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,494 DEBUG Processing 551/666 atomic regions from SNP 165214 to 165814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,558 DEBUG Processing 423/726 atomic regions from SNP 126736 to 127336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,713 DEBUG Processing 73/721 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,721 DEBUG Processing 552/666 atomic regions from SNP 165514 to 166114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,794 DEBUG Processing 424/726 atomic regions from SNP 127036 to 127636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,939 DEBUG Processing 74/721 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,946 DEBUG Processing 553/666 atomic regions from SNP 165814 to 166414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,022 DEBUG Processing 425/726 atomic regions from SNP 127336 to 127936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,163 DEBUG Processing 75/721 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,171 DEBUG Processing 554/666 atomic regions from SNP 166114 to 166714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,252 DEBUG Processing 426/726 atomic regions from SNP 127636 to 128236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,388 DEBUG Processing 76/721 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,396 DEBUG Processing 555/666 atomic regions from SNP 166414 to 167014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,477 DEBUG Processing 427/726 atomic regions from SNP 127936 to 128536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,611 DEBUG Processing 77/721 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,622 DEBUG Processing 556/666 atomic regions from SNP 166714 to 167314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,713 DEBUG Processing 428/726 atomic regions from SNP 128236 to 128836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,836 DEBUG Processing 78/721 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,850 DEBUG Processing 557/666 atomic regions from SNP 167014 to 167614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,942 DEBUG Processing 429/726 atomic regions from SNP 128536 to 129136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,055 DEBUG Processing 79/721 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,073 DEBUG Processing 558/666 atomic regions from SNP 167314 to 167914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,165 DEBUG Processing 430/726 atomic regions from SNP 128836 to 129436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,271 DEBUG Processing 80/721 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,296 DEBUG Processing 559/666 atomic regions from SNP 167614 to 168214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,395 DEBUG Processing 431/726 atomic regions from SNP 129136 to 129736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,499 DEBUG Processing 81/721 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,529 DEBUG Processing 560/666 atomic regions from SNP 167914 to 168514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,625 DEBUG Processing 432/726 atomic regions from SNP 129436 to 130036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,725 DEBUG Processing 82/721 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,754 DEBUG Processing 561/666 atomic regions from SNP 168214 to 168814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,849 DEBUG Processing 433/726 atomic regions from SNP 129736 to 130336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,944 DEBUG Processing 83/721 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,981 DEBUG Processing 562/666 atomic regions from SNP 168514 to 169114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,079 DEBUG Processing 434/726 atomic regions from SNP 130036 to 130636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,163 DEBUG Processing 84/721 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,204 DEBUG Processing 563/666 atomic regions from SNP 168814 to 169414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,302 DEBUG Processing 435/726 atomic regions from SNP 130336 to 130936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,380 DEBUG Processing 85/721 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,428 DEBUG Processing 564/666 atomic regions from SNP 169114 to 169714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,541 DEBUG Processing 436/726 atomic regions from SNP 130636 to 131236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,598 DEBUG Processing 86/721 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,652 DEBUG Processing 565/666 atomic regions from SNP 169414 to 170014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,788 DEBUG Processing 437/726 atomic regions from SNP 130936 to 131536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,817 DEBUG Processing 87/721 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,875 DEBUG Processing 566/666 atomic regions from SNP 169714 to 170314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,021 DEBUG Processing 438/726 atomic regions from SNP 131236 to 131836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,043 DEBUG Processing 88/721 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,097 DEBUG Processing 567/666 atomic regions from SNP 170014 to 170614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,252 DEBUG Processing 439/726 atomic regions from SNP 131536 to 132136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,270 DEBUG Processing 89/721 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,323 DEBUG Processing 568/666 atomic regions from SNP 170314 to 170914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,492 DEBUG Processing 440/726 atomic regions from SNP 131836 to 132436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,503 DEBUG Processing 90/721 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,553 DEBUG Processing 569/666 atomic regions from SNP 170614 to 171214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,729 DEBUG Processing 441/726 atomic regions from SNP 132136 to 132736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,734 DEBUG Processing 91/721 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,784 DEBUG Processing 570/666 atomic regions from SNP 170914 to 171514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,961 DEBUG Processing 92/721 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,972 DEBUG Processing 442/726 atomic regions from SNP 132436 to 133036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,024 DEBUG Processing 571/666 atomic regions from SNP 171214 to 171814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,193 DEBUG Processing 93/721 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,215 DEBUG Processing 443/726 atomic regions from SNP 132736 to 133336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,257 DEBUG Processing 572/666 atomic regions from SNP 171514 to 172114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,424 DEBUG Processing 94/721 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,456 DEBUG Processing 444/726 atomic regions from SNP 133036 to 133636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,489 DEBUG Processing 573/666 atomic regions from SNP 171814 to 172414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,653 DEBUG Processing 95/721 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,695 DEBUG Processing 445/726 atomic regions from SNP 133336 to 133936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,723 DEBUG Processing 574/666 atomic regions from SNP 172114 to 172714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,883 DEBUG Processing 96/721 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,936 DEBUG Processing 446/726 atomic regions from SNP 133636 to 134236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,954 DEBUG Processing 575/666 atomic regions from SNP 172414 to 173014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,113 DEBUG Processing 97/721 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,181 DEBUG Processing 447/726 atomic regions from SNP 133936 to 134536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,192 DEBUG Processing 576/666 atomic regions from SNP 172714 to 173314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,340 DEBUG Processing 98/721 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,425 DEBUG Processing 448/726 atomic regions from SNP 134236 to 134836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,428 DEBUG Processing 577/666 atomic regions from SNP 173014 to 173614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,569 DEBUG Processing 99/721 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,669 DEBUG Processing 578/666 atomic regions from SNP 173314 to 173914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,672 DEBUG Processing 449/726 atomic regions from SNP 134536 to 135136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,795 DEBUG Processing 100/721 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,907 DEBUG Processing 579/666 atomic regions from SNP 173614 to 174214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,917 DEBUG Processing 450/726 atomic regions from SNP 134836 to 135436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,024 DEBUG Processing 101/721 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,145 DEBUG Processing 580/666 atomic regions from SNP 173914 to 174514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,167 DEBUG Processing 451/726 atomic regions from SNP 135136 to 135736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,261 DEBUG Processing 102/721 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,377 DEBUG Processing 581/666 atomic regions from SNP 174214 to 174814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,412 DEBUG Processing 452/726 atomic regions from SNP 135436 to 136036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,493 DEBUG Processing 103/721 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,609 DEBUG Processing 582/666 atomic regions from SNP 174514 to 175114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,671 DEBUG Processing 453/726 atomic regions from SNP 135736 to 136336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,731 DEBUG Processing 104/721 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,868 DEBUG Processing 583/666 atomic regions from SNP 174814 to 175414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,925 DEBUG Processing 454/726 atomic regions from SNP 136036 to 136636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,972 DEBUG Processing 105/721 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,095 DEBUG Processing 584/666 atomic regions from SNP 175114 to 175714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,165 DEBUG Processing 455/726 atomic regions from SNP 136336 to 136936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,191 DEBUG Processing 106/721 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,329 DEBUG Processing 585/666 atomic regions from SNP 175414 to 176014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,406 DEBUG Processing 456/726 atomic regions from SNP 136636 to 137236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,423 DEBUG Processing 107/721 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,561 DEBUG Processing 586/666 atomic regions from SNP 175714 to 176314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,643 DEBUG Processing 457/726 atomic regions from SNP 136936 to 137536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,653 DEBUG Processing 108/721 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,799 DEBUG Processing 587/666 atomic regions from SNP 176014 to 176614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,882 DEBUG Processing 109/721 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,885 DEBUG Processing 458/726 atomic regions from SNP 137236 to 137836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,039 DEBUG Processing 588/666 atomic regions from SNP 176314 to 176914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,109 DEBUG Processing 110/721 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,123 DEBUG Processing 459/726 atomic regions from SNP 137536 to 138136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,274 DEBUG Processing 589/666 atomic regions from SNP 176614 to 177214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,337 DEBUG Processing 111/721 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,363 DEBUG Processing 460/726 atomic regions from SNP 137836 to 138436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,509 DEBUG Processing 590/666 atomic regions from SNP 176914 to 177514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,567 DEBUG Processing 112/721 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,604 DEBUG Processing 461/726 atomic regions from SNP 138136 to 138736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,753 DEBUG Processing 591/666 atomic regions from SNP 177214 to 177814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,796 DEBUG Processing 113/721 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,847 DEBUG Processing 462/726 atomic regions from SNP 138436 to 139036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,988 DEBUG Processing 592/666 atomic regions from SNP 177514 to 178114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,025 DEBUG Processing 114/721 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,087 DEBUG Processing 463/726 atomic regions from SNP 138736 to 139336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,225 DEBUG Processing 593/666 atomic regions from SNP 177814 to 178414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,253 DEBUG Processing 115/721 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,324 DEBUG Processing 464/726 atomic regions from SNP 139036 to 139636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,467 DEBUG Processing 594/666 atomic regions from SNP 178114 to 178714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,504 DEBUG Processing 116/721 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,565 DEBUG Processing 465/726 atomic regions from SNP 139336 to 139936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,706 DEBUG Processing 595/666 atomic regions from SNP 178414 to 179014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,759 DEBUG Processing 117/721 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,797 DEBUG Processing 466/726 atomic regions from SNP 139636 to 140236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,939 DEBUG Processing 596/666 atomic regions from SNP 178714 to 179314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,989 DEBUG Processing 118/721 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,036 DEBUG Processing 467/726 atomic regions from SNP 139936 to 140536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,178 DEBUG Processing 597/666 atomic regions from SNP 179014 to 179614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,220 DEBUG Processing 119/721 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,270 DEBUG Processing 468/726 atomic regions from SNP 140236 to 140836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,414 DEBUG Processing 598/666 atomic regions from SNP 179314 to 179914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,456 DEBUG Processing 120/721 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,501 DEBUG Processing 469/726 atomic regions from SNP 140536 to 141136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,649 DEBUG Processing 599/666 atomic regions from SNP 179614 to 180214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,687 DEBUG Processing 121/721 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,740 DEBUG Processing 470/726 atomic regions from SNP 140836 to 141436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,882 DEBUG Processing 600/666 atomic regions from SNP 179914 to 180514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,921 DEBUG Processing 122/721 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,983 DEBUG Processing 471/726 atomic regions from SNP 141136 to 141736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,119 DEBUG Processing 601/666 atomic regions from SNP 180214 to 180814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,155 DEBUG Processing 123/721 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,224 DEBUG Processing 472/726 atomic regions from SNP 141436 to 142036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,352 DEBUG Processing 602/666 atomic regions from SNP 180514 to 181114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,386 DEBUG Processing 124/721 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,467 DEBUG Processing 473/726 atomic regions from SNP 141736 to 142336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,592 DEBUG Processing 603/666 atomic regions from SNP 180814 to 181414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,626 DEBUG Processing 125/721 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,705 DEBUG Processing 474/726 atomic regions from SNP 142036 to 142636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,824 DEBUG Processing 604/666 atomic regions from SNP 181114 to 181714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,854 DEBUG Processing 126/721 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,933 DEBUG Processing 475/726 atomic regions from SNP 142336 to 142936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,054 DEBUG Processing 605/666 atomic regions from SNP 181414 to 182014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,088 DEBUG Processing 127/721 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,170 DEBUG Processing 476/726 atomic regions from SNP 142636 to 143236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,288 DEBUG Processing 606/666 atomic regions from SNP 181714 to 182314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,321 DEBUG Processing 128/721 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,412 DEBUG Processing 477/726 atomic regions from SNP 142936 to 143536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,535 DEBUG Processing 607/666 atomic regions from SNP 182014 to 182614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,564 DEBUG Processing 129/721 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,658 DEBUG Processing 478/726 atomic regions from SNP 143236 to 143836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,782 DEBUG Processing 608/666 atomic regions from SNP 182314 to 182914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,815 DEBUG Processing 130/721 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,900 DEBUG Processing 479/726 atomic regions from SNP 143536 to 144136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,022 DEBUG Processing 609/666 atomic regions from SNP 182614 to 183214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,054 DEBUG Processing 131/721 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,143 DEBUG Processing 480/726 atomic regions from SNP 143836 to 144436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,251 DEBUG Processing 610/666 atomic regions from SNP 182914 to 183514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,283 DEBUG Processing 132/721 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,381 DEBUG Processing 481/726 atomic regions from SNP 144136 to 144736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,478 DEBUG Processing 611/666 atomic regions from SNP 183214 to 183814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,510 DEBUG Processing 133/721 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,619 DEBUG Processing 482/726 atomic regions from SNP 144436 to 145036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,703 DEBUG Processing 612/666 atomic regions from SNP 183514 to 184114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,731 DEBUG Processing 134/721 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,856 DEBUG Processing 483/726 atomic regions from SNP 144736 to 145336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,930 DEBUG Processing 613/666 atomic regions from SNP 183814 to 184414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,956 DEBUG Processing 135/721 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,102 DEBUG Processing 484/726 atomic regions from SNP 145036 to 145636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,167 DEBUG Processing 614/666 atomic regions from SNP 184114 to 184714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,189 DEBUG Processing 136/721 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,352 DEBUG Processing 485/726 atomic regions from SNP 145336 to 145936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,397 DEBUG Processing 615/666 atomic regions from SNP 184414 to 185014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,417 DEBUG Processing 137/721 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,589 DEBUG Processing 486/726 atomic regions from SNP 145636 to 146236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,625 DEBUG Processing 616/666 atomic regions from SNP 184714 to 185314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,638 DEBUG Processing 138/721 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,819 DEBUG Segmenting atomic regions: 2025-01-31 09:53:19,820 DEBUG Processing 487/726 atomic regions from SNP 145936 to 146536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,852 DEBUG Processing 617/666 atomic regions from SNP 185014 to 185614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,864 DEBUG Processing 139/721 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,911 DEBUG Processing 1/680 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,055 DEBUG Processing 488/726 atomic regions from SNP 146236 to 146836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,082 DEBUG Processing 618/666 atomic regions from SNP 185314 to 185914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,097 DEBUG Processing 140/721 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,133 DEBUG Processing 2/680 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,288 DEBUG Processing 489/726 atomic regions from SNP 146536 to 147136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,313 DEBUG Processing 619/666 atomic regions from SNP 185614 to 186214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,331 DEBUG Processing 141/721 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,363 DEBUG Processing 3/680 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,464 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:53:20,525 DEBUG Processing 490/726 atomic regions from SNP 146836 to 147436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,538 DEBUG Processing 620/666 atomic regions from SNP 185914 to 186514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,558 DEBUG Processing 142/721 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,615 DEBUG Processing 4/680 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,765 DEBUG Processing 491/726 atomic regions from SNP 147136 to 147736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,769 DEBUG Processing 621/666 atomic regions from SNP 186214 to 186814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,790 DEBUG Processing 143/721 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,852 DEBUG Processing 5/680 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,006 DEBUG Processing 622/666 atomic regions from SNP 186514 to 187114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,013 DEBUG Processing 492/726 atomic regions from SNP 147436 to 148036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,024 DEBUG Processing 144/721 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,077 DEBUG Processing 6/680 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,237 DEBUG Processing 623/666 atomic regions from SNP 186814 to 187414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,249 DEBUG Processing 493/726 atomic regions from SNP 147736 to 148336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,255 DEBUG Processing 145/721 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,308 DEBUG Processing 7/680 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,471 DEBUG Processing 624/666 atomic regions from SNP 187114 to 187714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,486 DEBUG Processing 146/721 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,487 DEBUG Processing 494/726 atomic regions from SNP 148036 to 148636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,546 DEBUG Processing 8/680 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,706 DEBUG Processing 625/666 atomic regions from SNP 187414 to 188014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,720 DEBUG Processing 147/721 atomic regions from SNP 43946 to 44547 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,733 DEBUG Processing 495/726 atomic regions from SNP 148336 to 148936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,799 DEBUG Processing 9/680 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,932 DEBUG Processing 626/666 atomic regions from SNP 187714 to 188314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,942 DEBUG Processing 148/721 atomic regions from SNP 44247 to 44848 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,966 DEBUG Processing 496/726 atomic regions from SNP 148636 to 149236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,039 DEBUG Processing 10/680 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,153 DEBUG Processing 627/666 atomic regions from SNP 188014 to 188614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,162 DEBUG Processing 149/721 atomic regions from SNP 44548 to 45149 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,197 DEBUG Processing 497/726 atomic regions from SNP 148936 to 149536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,279 DEBUG Processing 11/680 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,374 DEBUG Processing 628/666 atomic regions from SNP 188314 to 188914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,379 DEBUG Processing 150/721 atomic regions from SNP 44849 to 45450 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,428 DEBUG Processing 498/726 atomic regions from SNP 149236 to 149836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,519 DEBUG Processing 12/680 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,600 DEBUG Processing 629/666 atomic regions from SNP 188614 to 189214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,605 DEBUG Processing 151/721 atomic regions from SNP 45150 to 45751 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,659 DEBUG Processing 499/726 atomic regions from SNP 149536 to 150136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,767 DEBUG Processing 13/680 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,831 DEBUG Processing 630/666 atomic regions from SNP 188914 to 189514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,833 DEBUG Processing 152/721 atomic regions from SNP 45451 to 46052 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,895 DEBUG Processing 500/726 atomic regions from SNP 149836 to 150436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,014 DEBUG Processing 14/680 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,070 DEBUG Processing 631/666 atomic regions from SNP 189214 to 189814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,071 DEBUG Processing 153/721 atomic regions from SNP 45752 to 46353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,134 DEBUG Processing 501/726 atomic regions from SNP 150136 to 150736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,253 DEBUG Processing 15/680 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,301 DEBUG Processing 154/721 atomic regions from SNP 46053 to 46654 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,305 DEBUG Processing 632/666 atomic regions from SNP 189514 to 190114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,374 DEBUG Processing 502/726 atomic regions from SNP 150436 to 151036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,484 DEBUG Processing 16/680 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,530 DEBUG Processing 155/721 atomic regions from SNP 46354 to 46955 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,538 DEBUG Processing 633/666 atomic regions from SNP 189814 to 190414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,612 DEBUG Processing 503/726 atomic regions from SNP 150736 to 151336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,721 DEBUG Processing 17/680 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,758 DEBUG Processing 156/721 atomic regions from SNP 46655 to 47256 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,774 DEBUG Processing 634/666 atomic regions from SNP 190114 to 190714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,851 DEBUG Processing 504/726 atomic regions from SNP 151036 to 151636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,972 DEBUG Processing 18/680 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,986 DEBUG Processing 157/721 atomic regions from SNP 46956 to 47557 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,001 DEBUG Processing 635/666 atomic regions from SNP 190414 to 191014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,087 DEBUG Processing 505/726 atomic regions from SNP 151336 to 151936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,214 DEBUG Processing 19/680 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,216 DEBUG Processing 158/721 atomic regions from SNP 47257 to 47858 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,231 DEBUG Processing 636/666 atomic regions from SNP 190714 to 191314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,318 DEBUG Processing 506/726 atomic regions from SNP 151636 to 152236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,439 DEBUG Processing 159/721 atomic regions from SNP 47558 to 48159 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,451 DEBUG Processing 20/680 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,456 DEBUG Processing 637/666 atomic regions from SNP 191014 to 191614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,548 DEBUG Processing 507/726 atomic regions from SNP 151936 to 152536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,665 DEBUG Processing 160/721 atomic regions from SNP 47859 to 48460 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,685 DEBUG Processing 638/666 atomic regions from SNP 191314 to 191914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,691 DEBUG Processing 21/680 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,783 DEBUG Processing 508/726 atomic regions from SNP 152236 to 152836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,885 DEBUG Processing 161/721 atomic regions from SNP 48160 to 48761 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,909 DEBUG Processing 639/666 atomic regions from SNP 191614 to 192214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,931 DEBUG Processing 22/680 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,020 DEBUG Processing 509/726 atomic regions from SNP 152536 to 153136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,104 DEBUG Processing 162/721 atomic regions from SNP 48461 to 49062 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,131 DEBUG Processing 640/666 atomic regions from SNP 191914 to 192514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,164 DEBUG Processing 23/680 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,256 DEBUG Processing 510/726 atomic regions from SNP 152836 to 153436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,328 DEBUG Processing 163/721 atomic regions from SNP 48762 to 49363 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,357 DEBUG Processing 641/666 atomic regions from SNP 192214 to 192814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,397 DEBUG Processing 24/680 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,485 DEBUG Processing 511/726 atomic regions from SNP 153136 to 153736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,554 DEBUG Processing 164/721 atomic regions from SNP 49063 to 49664 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,583 DEBUG Processing 642/666 atomic regions from SNP 192514 to 193114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,630 DEBUG Processing 25/680 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,716 DEBUG Processing 512/726 atomic regions from SNP 153436 to 154036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,785 DEBUG Processing 165/721 atomic regions from SNP 49364 to 49965 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,816 DEBUG Processing 643/666 atomic regions from SNP 192814 to 193414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,861 DEBUG Processing 26/680 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,944 DEBUG Processing 513/726 atomic regions from SNP 153736 to 154336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,014 DEBUG Processing 166/721 atomic regions from SNP 49665 to 50266 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,040 DEBUG Processing 644/666 atomic regions from SNP 193114 to 193714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,094 DEBUG Processing 27/680 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,168 DEBUG Processing 514/726 atomic regions from SNP 154036 to 154636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,241 DEBUG Processing 167/721 atomic regions from SNP 49966 to 50567 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,265 DEBUG Processing 645/666 atomic regions from SNP 193414 to 194014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,322 DEBUG Processing 28/680 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,394 DEBUG Processing 515/726 atomic regions from SNP 154336 to 154936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,484 DEBUG Processing 168/721 atomic regions from SNP 50267 to 50868 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,488 DEBUG Processing 646/666 atomic regions from SNP 193714 to 194314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,551 DEBUG Processing 29/680 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,616 DEBUG Processing 516/726 atomic regions from SNP 154636 to 155236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,715 DEBUG Processing 647/666 atomic regions from SNP 194014 to 194614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,719 DEBUG Processing 169/721 atomic regions from SNP 50568 to 51169 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,781 DEBUG Processing 30/680 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,836 DEBUG Processing 517/726 atomic regions from SNP 154936 to 155536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,947 DEBUG Processing 170/721 atomic regions from SNP 50869 to 51470 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,961 DEBUG Processing 648/666 atomic regions from SNP 194314 to 194914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,013 DEBUG Processing 31/680 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,050 DEBUG Processing 518/726 atomic regions from SNP 155236 to 155836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,206 DEBUG Processing 649/666 atomic regions from SNP 194614 to 195214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,206 DEBUG Processing 171/721 atomic regions from SNP 51170 to 51771 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,245 DEBUG Processing 32/680 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,267 DEBUG Processing 519/726 atomic regions from SNP 155536 to 156136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,436 DEBUG Processing 650/666 atomic regions from SNP 194914 to 195514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,447 DEBUG Processing 172/721 atomic regions from SNP 51471 to 52072 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,476 DEBUG Processing 33/680 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,497 DEBUG Processing 520/726 atomic regions from SNP 155836 to 156436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,672 DEBUG Processing 173/721 atomic regions from SNP 51772 to 52373 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,689 DEBUG Processing 651/666 atomic regions from SNP 195214 to 195814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,734 DEBUG Processing 521/726 atomic regions from SNP 156136 to 156736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,739 DEBUG Processing 34/680 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,897 DEBUG Processing 174/721 atomic regions from SNP 52073 to 52674 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,930 DEBUG Processing 652/666 atomic regions from SNP 195514 to 196114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,962 DEBUG Processing 522/726 atomic regions from SNP 156436 to 157036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,002 DEBUG Processing 35/680 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,120 DEBUG Processing 175/721 atomic regions from SNP 52374 to 52975 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,172 DEBUG Processing 653/666 atomic regions from SNP 195814 to 196414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,193 DEBUG Processing 523/726 atomic regions from SNP 156736 to 157336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,250 DEBUG Processing 36/680 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,341 DEBUG Processing 176/721 atomic regions from SNP 52675 to 53276 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,410 DEBUG Processing 654/666 atomic regions from SNP 196114 to 196714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,430 DEBUG Processing 524/726 atomic regions from SNP 157036 to 157636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,493 DEBUG Processing 37/680 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,560 DEBUG Processing 177/721 atomic regions from SNP 52976 to 53577 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,640 DEBUG Processing 655/666 atomic regions from SNP 196414 to 197014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,666 DEBUG Processing 525/726 atomic regions from SNP 157336 to 157936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,732 DEBUG Processing 38/680 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,777 DEBUG Processing 178/721 atomic regions from SNP 53277 to 53878 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,870 DEBUG Processing 656/666 atomic regions from SNP 196714 to 197314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,902 DEBUG Processing 526/726 atomic regions from SNP 157636 to 158236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,970 DEBUG Processing 39/680 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,993 DEBUG Processing 179/721 atomic regions from SNP 53578 to 54179 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,097 DEBUG Processing 657/666 atomic regions from SNP 197014 to 197614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,132 DEBUG Processing 527/726 atomic regions from SNP 157936 to 158536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,209 DEBUG Processing 40/680 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,211 DEBUG Processing 180/721 atomic regions from SNP 53879 to 54480 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,320 DEBUG Processing 658/666 atomic regions from SNP 197314 to 197914 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,359 DEBUG Processing 528/726 atomic regions from SNP 158236 to 158836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,431 DEBUG Processing 181/721 atomic regions from SNP 54180 to 54781 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,447 DEBUG Processing 41/680 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,539 DEBUG Processing 659/666 atomic regions from SNP 197614 to 198214 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,587 DEBUG Processing 529/726 atomic regions from SNP 158536 to 159136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,649 DEBUG Processing 182/721 atomic regions from SNP 54481 to 55082 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,681 DEBUG Processing 42/680 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,757 DEBUG Processing 660/666 atomic regions from SNP 197914 to 198514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,815 DEBUG Processing 530/726 atomic regions from SNP 158836 to 159436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,873 DEBUG Processing 183/721 atomic regions from SNP 54782 to 55383 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,916 DEBUG Processing 43/680 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,979 DEBUG Processing 661/666 atomic regions from SNP 198214 to 198814 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,052 DEBUG Processing 531/726 atomic regions from SNP 159136 to 159736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,099 DEBUG Processing 184/721 atomic regions from SNP 55083 to 55684 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,156 DEBUG Processing 44/680 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,201 DEBUG Processing 662/666 atomic regions from SNP 198514 to 199114 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,292 DEBUG Processing 532/726 atomic regions from SNP 159436 to 160036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,324 DEBUG Processing 185/721 atomic regions from SNP 55384 to 55985 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,396 DEBUG Processing 45/680 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,423 DEBUG Processing 663/666 atomic regions from SNP 198814 to 199414 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,524 DEBUG Processing 533/726 atomic regions from SNP 159736 to 160336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,548 DEBUG Processing 186/721 atomic regions from SNP 55685 to 56286 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,636 DEBUG Processing 46/680 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,645 DEBUG Processing 664/666 atomic regions from SNP 199114 to 199714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,757 DEBUG Processing 534/726 atomic regions from SNP 160036 to 160636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,772 DEBUG Processing 187/721 atomic regions from SNP 55986 to 56587 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,872 DEBUG Processing 665/666 atomic regions from SNP 199414 to 200014 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,878 DEBUG Processing 47/680 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,990 DEBUG Processing 535/726 atomic regions from SNP 160336 to 160936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,993 DEBUG Processing 188/721 atomic regions from SNP 56287 to 56888 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,097 DEBUG Processing 666/666 atomic regions from SNP 199714 to 200314 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,120 DEBUG Processing 48/680 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,216 DEBUG Processing 189/721 atomic regions from SNP 56588 to 57189 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,220 DEBUG Processing 536/726 atomic regions from SNP 160636 to 161236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,241 DEBUG Unique SNPs positions in subchromosome 2: 200315 2025-01-31 09:53:31,356 DEBUG Processing 49/680 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,438 DEBUG Processing 190/721 atomic regions from SNP 56889 to 57490 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,451 DEBUG Processing 537/726 atomic regions from SNP 160936 to 161536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,595 DEBUG Processing 50/680 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,656 DEBUG Processing 191/721 atomic regions from SNP 57190 to 57791 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,679 DEBUG Processing 538/726 atomic regions from SNP 161236 to 161836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,834 DEBUG Processing 51/680 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,875 DEBUG Processing 192/721 atomic regions from SNP 57491 to 58092 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,907 DEBUG Processing 539/726 atomic regions from SNP 161536 to 162136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,078 DEBUG Processing 52/680 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,098 DEBUG Processing 193/721 atomic regions from SNP 57792 to 58393 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,135 DEBUG Processing 540/726 atomic regions from SNP 161836 to 162436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,320 DEBUG Processing 194/721 atomic regions from SNP 58093 to 58694 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,327 DEBUG Processing 53/680 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,364 DEBUG Processing 541/726 atomic regions from SNP 162136 to 162736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,544 DEBUG Processing 195/721 atomic regions from SNP 58394 to 58995 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,584 DEBUG Processing 54/680 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,594 DEBUG Processing 542/726 atomic regions from SNP 162436 to 163036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,765 DEBUG Processing 196/721 atomic regions from SNP 58695 to 59296 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,826 DEBUG Processing 543/726 atomic regions from SNP 162736 to 163336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,846 DEBUG Processing 55/680 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,983 DEBUG Processing 197/721 atomic regions from SNP 58996 to 59597 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,053 DEBUG Processing 544/726 atomic regions from SNP 163036 to 163636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,088 DEBUG Processing 56/680 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,200 DEBUG Processing 198/721 atomic regions from SNP 59297 to 59898 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,281 DEBUG Processing 545/726 atomic regions from SNP 163336 to 163936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,332 DEBUG Processing 57/680 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,418 DEBUG Processing 199/721 atomic regions from SNP 59598 to 60199 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,507 DEBUG Processing 546/726 atomic regions from SNP 163636 to 164236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,569 DEBUG Processing 58/680 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,634 DEBUG Processing 200/721 atomic regions from SNP 59899 to 60500 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,737 DEBUG Processing 547/726 atomic regions from SNP 163936 to 164536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,796 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:53:33,798 DEBUG chr12: Signal quantile: 0.995. signal threshold: 12. Best RMSEA: 0.019 2025-01-31 09:53:33,818 DEBUG Processing 59/680 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,848 DEBUG Processing 201/721 atomic regions from SNP 60200 to 60801 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,961 DEBUG Processing 548/726 atomic regions from SNP 164236 to 164836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,064 DEBUG Processing 60/680 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,071 DEBUG Processing 202/721 atomic regions from SNP 60501 to 61102 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,186 DEBUG Processing 549/726 atomic regions from SNP 164536 to 165136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,294 DEBUG Processing 203/721 atomic regions from SNP 60802 to 61403 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,313 DEBUG Processing 61/680 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,410 DEBUG Processing 550/726 atomic regions from SNP 164836 to 165436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,522 DEBUG Processing 204/721 atomic regions from SNP 61103 to 61704 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,567 DEBUG Processing 62/680 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,640 DEBUG Processing 551/726 atomic regions from SNP 165136 to 165736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,747 DEBUG Processing 205/721 atomic regions from SNP 61404 to 62005 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,805 DEBUG Processing 63/680 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,873 DEBUG Processing 552/726 atomic regions from SNP 165436 to 166036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,974 DEBUG Processing 206/721 atomic regions from SNP 61705 to 62306 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,043 DEBUG Processing 64/680 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,100 DEBUG Processing 553/726 atomic regions from SNP 165736 to 166336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,203 DEBUG Processing 207/721 atomic regions from SNP 62006 to 62607 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,275 DEBUG Processing 65/680 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,329 DEBUG Processing 554/726 atomic regions from SNP 166036 to 166636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,435 DEBUG Processing 208/721 atomic regions from SNP 62307 to 62908 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,521 DEBUG Processing 66/680 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,571 DEBUG Processing 555/726 atomic regions from SNP 166336 to 166936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,664 DEBUG Processing 209/721 atomic regions from SNP 62608 to 63209 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,758 DEBUG Processing 67/680 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,806 DEBUG Processing 556/726 atomic regions from SNP 166636 to 167236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,884 DEBUG Processing 210/721 atomic regions from SNP 62909 to 63510 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,995 DEBUG Processing 68/680 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,034 DEBUG Processing 557/726 atomic regions from SNP 166936 to 167536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,106 DEBUG Processing 211/721 atomic regions from SNP 63210 to 63811 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,234 DEBUG chr12 total SNP count: 199639 2025-01-31 09:53:36,234 DEBUG chr12 length: 120129022 2025-01-31 09:53:36,234 DEBUG ----------------------------------------- 2025-01-31 09:53:36,234 INFO Processing SNPs in chr12 2025-01-31 09:53:36,239 DEBUG Processing 69/680 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,263 DEBUG Processing 558/726 atomic regions from SNP 167236 to 167836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,327 DEBUG Processing 212/721 atomic regions from SNP 63511 to 64112 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,442 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 199639)] 2025-01-31 09:53:36,466 DEBUG Subchromosome time: 185.82489724457264, subchromosome SNPs: 200315 2025-01-31 09:53:36,466 DEBUG Estimated BADs: [0.29, 1.15, 2.29, 1.15, 2.29, 4.59, 2.29, 1.15, 0.29, 0.57, 0.29, 0.57, 0.29, 1.15] SNP counts: [177, 21214, 27073, 23810, 5018, 2419, 28181, 17082, 8108, 5099, 15615, 15290, 11983, 19423] SNP IDs counts: [177, 21214, 27073, 23810, 5018, 2419, 28181, 17082, 8108, 5099, 15615, 15290, 11983, 19423] Critical gap: 621063bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.70Mbp, 34.55Mbp, 50.76Mbp, 54.37Mbp, 55.66Mbp, 71.28Mbp, 80.67Mbp, 85.61Mbp, 88.55Mbp, 97.93Mbp, 106.57Mbp, 113.80Mbp, 124.90Mbp] 2025-01-31 09:53:36,466 DEBUG chr14 time: 185.82551228627563 s 2025-01-31 09:53:36,479 DEBUG Processing 70/680 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,501 DEBUG Processing 559/726 atomic regions from SNP 167536 to 168136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,552 DEBUG Processing 213/721 atomic regions from SNP 63812 to 64413 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,584 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:36,588 DEBUG chr14: Fitting background model for 14 segments 2025-01-31 09:53:36,717 DEBUG Processing 71/680 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,732 DEBUG Processing 560/726 atomic regions from SNP 167836 to 168436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,784 DEBUG Processing 214/721 atomic regions from SNP 64113 to 64714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,955 DEBUG Processing 72/680 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,969 DEBUG Processing 561/726 atomic regions from SNP 168136 to 168736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,012 DEBUG Processing 215/721 atomic regions from SNP 64414 to 65015 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,193 DEBUG Processing 73/680 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,206 DEBUG Processing 562/726 atomic regions from SNP 168436 to 169036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,241 DEBUG Processing 216/721 atomic regions from SNP 64715 to 65316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,434 DEBUG Processing 74/680 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,442 DEBUG Processing 563/726 atomic regions from SNP 168736 to 169336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,468 DEBUG Processing 217/721 atomic regions from SNP 65016 to 65617 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,671 DEBUG Processing 75/680 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,677 DEBUG Processing 564/726 atomic regions from SNP 169036 to 169636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,695 DEBUG Processing 218/721 atomic regions from SNP 65317 to 65918 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,913 DEBUG Processing 76/680 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,916 DEBUG Processing 565/726 atomic regions from SNP 169336 to 169936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,923 DEBUG Processing 219/721 atomic regions from SNP 65618 to 66219 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,154 DEBUG Processing 566/726 atomic regions from SNP 169636 to 170236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,154 DEBUG Processing 77/680 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,156 DEBUG Processing 220/721 atomic regions from SNP 65919 to 66520 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,385 DEBUG Processing 221/721 atomic regions from SNP 66220 to 66821 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,393 DEBUG Processing 567/726 atomic regions from SNP 169936 to 170536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,398 DEBUG Processing 78/680 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,622 DEBUG Processing 222/721 atomic regions from SNP 66521 to 67122 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,639 DEBUG Processing 568/726 atomic regions from SNP 170236 to 170836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,652 DEBUG Processing 79/680 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,855 DEBUG Processing 223/721 atomic regions from SNP 66822 to 67423 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,885 DEBUG Processing 569/726 atomic regions from SNP 170536 to 171136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,901 DEBUG Processing 80/680 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,091 DEBUG Processing 224/721 atomic regions from SNP 67123 to 67724 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,128 DEBUG Processing 570/726 atomic regions from SNP 170836 to 171436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,142 DEBUG Processing 81/680 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,328 DEBUG Processing 225/721 atomic regions from SNP 67424 to 68025 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,370 DEBUG Processing 571/726 atomic regions from SNP 171136 to 171736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,387 DEBUG Processing 82/680 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,565 DEBUG Processing 226/721 atomic regions from SNP 67725 to 68326 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,614 DEBUG Processing 572/726 atomic regions from SNP 171436 to 172036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,629 DEBUG Processing 83/680 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,799 DEBUG Processing 227/721 atomic regions from SNP 68026 to 68627 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,859 DEBUG Processing 573/726 atomic regions from SNP 171736 to 172336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,873 DEBUG Processing 84/680 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,030 DEBUG Processing 228/721 atomic regions from SNP 68327 to 68928 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,102 DEBUG Processing 574/726 atomic regions from SNP 172036 to 172636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,111 DEBUG Processing 85/680 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,259 DEBUG Processing 229/721 atomic regions from SNP 68628 to 69229 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,345 DEBUG Processing 575/726 atomic regions from SNP 172336 to 172936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,348 DEBUG Processing 86/680 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,489 DEBUG Processing 230/721 atomic regions from SNP 68929 to 69530 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,585 DEBUG Processing 576/726 atomic regions from SNP 172636 to 173236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,586 DEBUG Processing 87/680 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,719 DEBUG Processing 231/721 atomic regions from SNP 69230 to 69831 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,820 DEBUG Processing 88/680 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,820 DEBUG Processing 577/726 atomic regions from SNP 172936 to 173536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,951 DEBUG Processing 232/721 atomic regions from SNP 69531 to 70132 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,053 DEBUG Processing 89/680 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,053 DEBUG Processing 578/726 atomic regions from SNP 173236 to 173836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,184 DEBUG Processing 233/721 atomic regions from SNP 69832 to 70433 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,288 DEBUG Processing 579/726 atomic regions from SNP 173536 to 174136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,291 DEBUG Processing 90/680 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,415 DEBUG Processing 234/721 atomic regions from SNP 70133 to 70734 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,519 DEBUG Processing 580/726 atomic regions from SNP 173836 to 174436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,531 DEBUG Processing 91/680 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,641 DEBUG Processing 235/721 atomic regions from SNP 70434 to 71035 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,757 DEBUG Processing 581/726 atomic regions from SNP 174136 to 174736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,786 DEBUG Processing 92/680 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,869 DEBUG Processing 236/721 atomic regions from SNP 70735 to 71336 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,998 DEBUG Processing 582/726 atomic regions from SNP 174436 to 175036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,024 DEBUG Processing 93/680 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,095 DEBUG Processing 237/721 atomic regions from SNP 71036 to 71637 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,234 DEBUG Processing 583/726 atomic regions from SNP 174736 to 175336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,259 DEBUG Processing 94/680 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,320 DEBUG Processing 238/721 atomic regions from SNP 71337 to 71938 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,473 DEBUG Processing 584/726 atomic regions from SNP 175036 to 175636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,505 DEBUG Processing 95/680 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,552 DEBUG Processing 239/721 atomic regions from SNP 71638 to 72239 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,705 DEBUG Processing 585/726 atomic regions from SNP 175336 to 175936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,742 DEBUG Processing 96/680 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,774 DEBUG Processing 240/721 atomic regions from SNP 71939 to 72540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,935 DEBUG Processing 586/726 atomic regions from SNP 175636 to 176236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,979 DEBUG Processing 97/680 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,994 DEBUG Processing 241/721 atomic regions from SNP 72240 to 72841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,172 DEBUG Processing 587/726 atomic regions from SNP 175936 to 176536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,220 DEBUG Processing 98/680 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,221 DEBUG Processing 242/721 atomic regions from SNP 72541 to 73141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,406 DEBUG Processing 588/726 atomic regions from SNP 176236 to 176836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,445 DEBUG Processing 243/721 atomic regions from SNP 72841 to 73441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,456 DEBUG Processing 99/680 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,635 DEBUG Processing 589/726 atomic regions from SNP 176536 to 177136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,674 DEBUG Processing 244/721 atomic regions from SNP 73141 to 73741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,693 DEBUG Processing 100/680 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,863 DEBUG Processing 590/726 atomic regions from SNP 176836 to 177436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,897 DEBUG Processing 245/721 atomic regions from SNP 73441 to 74041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,926 DEBUG Processing 101/680 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,084 DEBUG Processing 591/726 atomic regions from SNP 177136 to 177736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,114 DEBUG Processing 246/721 atomic regions from SNP 73741 to 74341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,157 DEBUG Processing 102/680 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,309 DEBUG Processing 592/726 atomic regions from SNP 177436 to 178036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,340 DEBUG Processing 247/721 atomic regions from SNP 74041 to 74641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,394 DEBUG Processing 103/680 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,535 DEBUG Processing 593/726 atomic regions from SNP 177736 to 178336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,559 DEBUG Processing 248/721 atomic regions from SNP 74341 to 74941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,656 DEBUG Processing 104/680 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,765 DEBUG Processing 594/726 atomic regions from SNP 178036 to 178636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,781 DEBUG Processing 249/721 atomic regions from SNP 74641 to 75241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,908 DEBUG Processing 105/680 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,999 DEBUG Processing 595/726 atomic regions from SNP 178336 to 178936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,012 DEBUG Processing 250/721 atomic regions from SNP 74941 to 75541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,144 DEBUG Processing 106/680 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,241 DEBUG Processing 251/721 atomic regions from SNP 75241 to 75841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,250 DEBUG Processing 596/726 atomic regions from SNP 178636 to 179236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,404 DEBUG Processing 107/680 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,465 DEBUG Processing 252/721 atomic regions from SNP 75541 to 76141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,492 DEBUG Processing 597/726 atomic regions from SNP 178936 to 179536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,670 DEBUG Processing 108/680 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,701 DEBUG Processing 253/721 atomic regions from SNP 75841 to 76441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,735 DEBUG Processing 598/726 atomic regions from SNP 179236 to 179836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,920 DEBUG Processing 254/721 atomic regions from SNP 76141 to 76741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,928 DEBUG Processing 109/680 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,980 DEBUG Processing 599/726 atomic regions from SNP 179536 to 180136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,135 DEBUG Processing 255/721 atomic regions from SNP 76441 to 77041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,162 DEBUG Processing 110/680 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,230 DEBUG Processing 600/726 atomic regions from SNP 179836 to 180436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,348 DEBUG Processing 256/721 atomic regions from SNP 76741 to 77341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,391 DEBUG Processing 111/680 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,472 DEBUG Processing 601/726 atomic regions from SNP 180136 to 180736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,570 DEBUG Processing 257/721 atomic regions from SNP 77041 to 77641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,615 DEBUG Processing 112/680 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,708 DEBUG Processing 602/726 atomic regions from SNP 180436 to 181036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,790 DEBUG Processing 258/721 atomic regions from SNP 77341 to 77941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,842 DEBUG Processing 113/680 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,940 DEBUG Processing 603/726 atomic regions from SNP 180736 to 181336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,012 DEBUG Processing 259/721 atomic regions from SNP 77641 to 78241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,073 DEBUG Processing 114/680 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,170 DEBUG Processing 604/726 atomic regions from SNP 181036 to 181636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,234 DEBUG Processing 260/721 atomic regions from SNP 77941 to 78541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,324 DEBUG Processing 115/680 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,398 DEBUG Processing 605/726 atomic regions from SNP 181336 to 181936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,463 DEBUG Processing 261/721 atomic regions from SNP 78241 to 78841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,596 DEBUG Processing 116/680 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,632 DEBUG Processing 606/726 atomic regions from SNP 181636 to 182236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,699 DEBUG Processing 262/721 atomic regions from SNP 78541 to 79141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,866 DEBUG Processing 607/726 atomic regions from SNP 181936 to 182536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,875 DEBUG Processing 117/680 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,930 DEBUG Processing 263/721 atomic regions from SNP 78841 to 79441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,097 DEBUG Processing 608/726 atomic regions from SNP 182236 to 182836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,149 DEBUG Processing 118/680 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,165 DEBUG Processing 264/721 atomic regions from SNP 79141 to 79741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,328 DEBUG Processing 609/726 atomic regions from SNP 182536 to 183136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,393 DEBUG Processing 119/680 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,398 DEBUG Processing 265/721 atomic regions from SNP 79441 to 80041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,553 DEBUG Processing 610/726 atomic regions from SNP 182836 to 183436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,631 DEBUG Processing 266/721 atomic regions from SNP 79741 to 80341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,646 DEBUG Processing 120/680 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,784 DEBUG Processing 611/726 atomic regions from SNP 183136 to 183736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,863 DEBUG Processing 267/721 atomic regions from SNP 80041 to 80641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,906 DEBUG Processing 121/680 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,015 DEBUG Processing 612/726 atomic regions from SNP 183436 to 184036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,088 DEBUG Processing 268/721 atomic regions from SNP 80341 to 80941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,160 DEBUG Processing 122/680 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,253 DEBUG Processing 613/726 atomic regions from SNP 183736 to 184336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,323 DEBUG Processing 269/721 atomic regions from SNP 80641 to 81241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,423 DEBUG Processing 123/680 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,487 DEBUG Processing 614/726 atomic regions from SNP 184036 to 184636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,569 DEBUG Processing 270/721 atomic regions from SNP 80941 to 81541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,689 DEBUG Processing 124/680 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,720 DEBUG Processing 615/726 atomic regions from SNP 184336 to 184936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,792 DEBUG Processing 271/721 atomic regions from SNP 81241 to 81841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,949 DEBUG Processing 125/680 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,957 DEBUG Processing 616/726 atomic regions from SNP 184636 to 185236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,013 DEBUG Processing 272/721 atomic regions from SNP 81541 to 82141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,204 DEBUG Processing 126/680 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,215 DEBUG Processing 617/726 atomic regions from SNP 184936 to 185536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,242 DEBUG Processing 273/721 atomic regions from SNP 81841 to 82441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,465 DEBUG Processing 127/680 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,484 DEBUG Processing 274/721 atomic regions from SNP 82141 to 82741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,492 DEBUG Processing 618/726 atomic regions from SNP 185236 to 185836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,709 DEBUG Processing 128/680 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,720 DEBUG Processing 275/721 atomic regions from SNP 82441 to 83041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,766 DEBUG Processing 619/726 atomic regions from SNP 185536 to 186136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,950 DEBUG Processing 276/721 atomic regions from SNP 82741 to 83341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,952 DEBUG Processing 129/680 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,009 DEBUG Processing 620/726 atomic regions from SNP 185836 to 186436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,186 DEBUG Processing 130/680 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,194 DEBUG Processing 277/721 atomic regions from SNP 83041 to 83641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,253 DEBUG Processing 621/726 atomic regions from SNP 186136 to 186736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,421 DEBUG Processing 131/680 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,445 DEBUG Processing 278/721 atomic regions from SNP 83341 to 83941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,496 DEBUG Processing 622/726 atomic regions from SNP 186436 to 187036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,658 DEBUG Processing 132/680 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,682 DEBUG Processing 279/721 atomic regions from SNP 83641 to 84241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,733 DEBUG Processing 623/726 atomic regions from SNP 186736 to 187336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,896 DEBUG Processing 133/680 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,897 DEBUG Processing 280/721 atomic regions from SNP 83941 to 84541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,986 DEBUG Processing 624/726 atomic regions from SNP 187036 to 187636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,123 DEBUG Processing 281/721 atomic regions from SNP 84241 to 84841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,143 DEBUG Processing 134/680 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,269 DEBUG Processing 625/726 atomic regions from SNP 187336 to 187936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,350 DEBUG Processing 282/721 atomic regions from SNP 84541 to 85141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,382 DEBUG Processing 135/680 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,531 DEBUG Processing 626/726 atomic regions from SNP 187636 to 188236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,561 DEBUG Processing 283/721 atomic regions from SNP 84841 to 85441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,612 DEBUG Processing 136/680 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,641 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:53:52,775 DEBUG Processing 627/726 atomic regions from SNP 187936 to 188536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,780 DEBUG Processing 284/721 atomic regions from SNP 85141 to 85741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,847 DEBUG Processing 137/680 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,006 DEBUG Processing 285/721 atomic regions from SNP 85441 to 86041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,038 DEBUG Processing 628/726 atomic regions from SNP 188236 to 188836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,082 DEBUG Processing 138/680 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,262 DEBUG Processing 286/721 atomic regions from SNP 85741 to 86341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,315 DEBUG Processing 629/726 atomic regions from SNP 188536 to 189136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,321 DEBUG Processing 139/680 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,511 DEBUG Processing 287/721 atomic regions from SNP 86041 to 86641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,559 DEBUG Processing 140/680 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,577 DEBUG Processing 630/726 atomic regions from SNP 188836 to 189436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,691 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:53:53,761 DEBUG Processing 288/721 atomic regions from SNP 86341 to 86941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,800 DEBUG Processing 141/680 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,830 DEBUG Processing 631/726 atomic regions from SNP 189136 to 189736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,982 DEBUG Processing 289/721 atomic regions from SNP 86641 to 87241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,035 DEBUG Processing 142/680 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,089 DEBUG Processing 632/726 atomic regions from SNP 189436 to 190036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,213 DEBUG Processing 290/721 atomic regions from SNP 86941 to 87541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,269 DEBUG Processing 143/680 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,345 DEBUG Processing 633/726 atomic regions from SNP 189736 to 190336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,450 DEBUG Processing 291/721 atomic regions from SNP 87241 to 87841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,505 DEBUG Processing 144/680 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,607 DEBUG Processing 634/726 atomic regions from SNP 190036 to 190636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,675 DEBUG Processing 292/721 atomic regions from SNP 87541 to 88141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,747 DEBUG Processing 145/680 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,873 DEBUG Processing 635/726 atomic regions from SNP 190336 to 190936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,893 DEBUG Processing 293/721 atomic regions from SNP 87841 to 88441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,983 DEBUG Processing 146/680 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,103 DEBUG Processing 636/726 atomic regions from SNP 190636 to 191236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,114 DEBUG Processing 294/721 atomic regions from SNP 88141 to 88741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,218 DEBUG Processing 147/680 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,330 DEBUG Processing 637/726 atomic regions from SNP 190936 to 191536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,334 DEBUG Processing 295/721 atomic regions from SNP 88441 to 89041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,451 DEBUG Processing 148/680 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,557 DEBUG Processing 296/721 atomic regions from SNP 88741 to 89341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,563 DEBUG Processing 638/726 atomic regions from SNP 191236 to 191836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,683 DEBUG Processing 149/680 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,784 DEBUG Processing 297/721 atomic regions from SNP 89041 to 89641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,801 DEBUG Processing 639/726 atomic regions from SNP 191536 to 192136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,928 DEBUG Processing 150/680 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,026 DEBUG Processing 298/721 atomic regions from SNP 89341 to 89941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,052 DEBUG Processing 640/726 atomic regions from SNP 191836 to 192436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,169 DEBUG Processing 151/680 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,266 DEBUG Processing 299/721 atomic regions from SNP 89641 to 90241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,317 DEBUG Processing 641/726 atomic regions from SNP 192136 to 192736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,415 DEBUG Processing 152/680 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,494 DEBUG Processing 300/721 atomic regions from SNP 89941 to 90541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,570 DEBUG Processing 642/726 atomic regions from SNP 192436 to 193036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,654 DEBUG Processing 153/680 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,719 DEBUG Processing 301/721 atomic regions from SNP 90241 to 90841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,818 DEBUG Processing 643/726 atomic regions from SNP 192736 to 193336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,897 DEBUG Processing 154/680 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,938 DEBUG Processing 302/721 atomic regions from SNP 90541 to 91141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,078 DEBUG Processing 644/726 atomic regions from SNP 193036 to 193636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,155 DEBUG Processing 155/680 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,158 DEBUG Processing 303/721 atomic regions from SNP 90841 to 91441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,339 DEBUG Processing 645/726 atomic regions from SNP 193336 to 193936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,386 DEBUG Processing 304/721 atomic regions from SNP 91141 to 91741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,387 DEBUG Processing 156/680 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,598 DEBUG Processing 646/726 atomic regions from SNP 193636 to 194236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,621 DEBUG Processing 305/721 atomic regions from SNP 91441 to 92041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,629 DEBUG Processing 157/680 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,850 DEBUG Processing 647/726 atomic regions from SNP 193936 to 194536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,885 DEBUG Processing 306/721 atomic regions from SNP 91741 to 92341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,904 DEBUG Processing 158/680 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,103 DEBUG Processing 648/726 atomic regions from SNP 194236 to 194836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,130 DEBUG Processing 307/721 atomic regions from SNP 92041 to 92641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,153 DEBUG Processing 159/680 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,339 DEBUG Processing 649/726 atomic regions from SNP 194536 to 195136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,358 DEBUG Processing 308/721 atomic regions from SNP 92341 to 92941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,397 DEBUG Processing 160/680 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,574 DEBUG Processing 650/726 atomic regions from SNP 194836 to 195436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,586 DEBUG Processing 309/721 atomic regions from SNP 92641 to 93241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,645 DEBUG Processing 161/680 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,807 DEBUG Processing 651/726 atomic regions from SNP 195136 to 195736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,834 DEBUG Processing 310/721 atomic regions from SNP 92941 to 93541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,883 DEBUG Processing 162/680 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,036 DEBUG Processing 652/726 atomic regions from SNP 195436 to 196036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,068 DEBUG Processing 311/721 atomic regions from SNP 93241 to 93841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,111 DEBUG Processing 163/680 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,267 DEBUG Processing 653/726 atomic regions from SNP 195736 to 196336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,294 DEBUG Processing 312/721 atomic regions from SNP 93541 to 94141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,340 DEBUG Processing 164/680 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,498 DEBUG Processing 654/726 atomic regions from SNP 196036 to 196636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,520 DEBUG Processing 313/721 atomic regions from SNP 93841 to 94441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,579 DEBUG Processing 165/680 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,725 DEBUG Processing 655/726 atomic regions from SNP 196336 to 196936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,739 DEBUG Processing 314/721 atomic regions from SNP 94141 to 94741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,826 DEBUG Processing 166/680 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,962 DEBUG Processing 656/726 atomic regions from SNP 196636 to 197236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,966 DEBUG Processing 315/721 atomic regions from SNP 94441 to 95041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,057 DEBUG Processing 167/680 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,193 DEBUG Processing 316/721 atomic regions from SNP 94741 to 95341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,202 DEBUG Processing 657/726 atomic regions from SNP 196936 to 197536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,300 DEBUG Processing 168/680 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,404 DEBUG Processing 317/721 atomic regions from SNP 95041 to 95641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,424 DEBUG Processing 658/726 atomic regions from SNP 197236 to 197836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,532 DEBUG Processing 169/680 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,613 DEBUG Processing 318/721 atomic regions from SNP 95341 to 95941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,647 DEBUG Processing 659/726 atomic regions from SNP 197536 to 198136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,770 DEBUG Processing 170/680 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,833 DEBUG Processing 319/721 atomic regions from SNP 95641 to 96241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,872 DEBUG Processing 660/726 atomic regions from SNP 197836 to 198436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,014 DEBUG Processing 171/680 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,057 DEBUG Processing 320/721 atomic regions from SNP 95941 to 96541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,102 DEBUG Processing 661/726 atomic regions from SNP 198136 to 198736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,257 DEBUG Processing 172/680 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,279 DEBUG Segmenting atomic regions: 2025-01-31 09:54:01,283 DEBUG Processing 321/721 atomic regions from SNP 96241 to 96841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,334 DEBUG Processing 662/726 atomic regions from SNP 198436 to 199036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,370 DEBUG Processing 1/664 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,495 DEBUG Processing 173/680 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,506 DEBUG Processing 322/721 atomic regions from SNP 96541 to 97141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,568 DEBUG Processing 663/726 atomic regions from SNP 198736 to 199336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,596 DEBUG Processing 2/664 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,719 DEBUG Processing 174/680 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,739 DEBUG Processing 323/721 atomic regions from SNP 96841 to 97441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,807 DEBUG Processing 664/726 atomic regions from SNP 199036 to 199636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,836 DEBUG Processing 3/664 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,932 DEBUG Processing 175/680 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,981 DEBUG Processing 324/721 atomic regions from SNP 97141 to 97741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,047 DEBUG Processing 665/726 atomic regions from SNP 199336 to 199936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,066 DEBUG Processing 4/664 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,146 DEBUG Processing 176/680 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,201 DEBUG Processing 325/721 atomic regions from SNP 97441 to 98041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,284 DEBUG Processing 666/726 atomic regions from SNP 199636 to 200236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,304 DEBUG Processing 5/664 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,366 DEBUG Processing 177/680 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,419 DEBUG Processing 326/721 atomic regions from SNP 97741 to 98341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,528 DEBUG Processing 667/726 atomic regions from SNP 199936 to 200536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,551 DEBUG Processing 6/664 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,614 DEBUG Processing 178/680 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,650 DEBUG Processing 327/721 atomic regions from SNP 98041 to 98641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,772 DEBUG Processing 668/726 atomic regions from SNP 200236 to 200836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,800 DEBUG Processing 7/664 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,859 DEBUG Processing 179/680 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,890 DEBUG Processing 328/721 atomic regions from SNP 98341 to 98941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,010 DEBUG Processing 669/726 atomic regions from SNP 200536 to 201136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,036 DEBUG Processing 8/664 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,106 DEBUG Processing 180/680 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,109 DEBUG Processing 329/721 atomic regions from SNP 98641 to 99241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,238 DEBUG Processing 670/726 atomic regions from SNP 200836 to 201436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,267 DEBUG Processing 9/664 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,337 DEBUG Processing 330/721 atomic regions from SNP 98941 to 99541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,343 DEBUG Processing 181/680 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,476 DEBUG Processing 671/726 atomic regions from SNP 201136 to 201736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,504 DEBUG Processing 10/664 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,585 DEBUG Processing 182/680 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,595 DEBUG Processing 331/721 atomic regions from SNP 99241 to 99841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,711 DEBUG Processing 672/726 atomic regions from SNP 201436 to 202036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,744 DEBUG Processing 11/664 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,836 DEBUG Processing 183/680 atomic regions from SNP 54782 to 55383 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,847 DEBUG Processing 332/721 atomic regions from SNP 99541 to 100141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,946 DEBUG Processing 673/726 atomic regions from SNP 201736 to 202336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,991 DEBUG Processing 12/664 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,073 DEBUG Processing 184/680 atomic regions from SNP 55083 to 55684 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,090 DEBUG Processing 333/721 atomic regions from SNP 99841 to 100441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,165 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:54:04,166 DEBUG chr16: Signal quantile: 0.995. signal threshold: 14. Best RMSEA: 0.018 2025-01-31 09:54:04,181 DEBUG Processing 674/726 atomic regions from SNP 202036 to 202636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,219 DEBUG Processing 13/664 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,301 DEBUG Processing 185/680 atomic regions from SNP 55384 to 55985 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,320 DEBUG Processing 334/721 atomic regions from SNP 100141 to 100741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,420 DEBUG Processing 675/726 atomic regions from SNP 202336 to 202936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,446 DEBUG Processing 14/664 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,534 DEBUG Processing 186/680 atomic regions from SNP 55685 to 56286 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,544 DEBUG Processing 335/721 atomic regions from SNP 100441 to 101041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,663 DEBUG Processing 676/726 atomic regions from SNP 202636 to 203236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,679 DEBUG Processing 15/664 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,772 DEBUG Processing 187/680 atomic regions from SNP 55986 to 56587 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,773 DEBUG Processing 336/721 atomic regions from SNP 100741 to 101341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,903 DEBUG Processing 677/726 atomic regions from SNP 202936 to 203536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,909 DEBUG Processing 16/664 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,014 DEBUG Processing 337/721 atomic regions from SNP 101041 to 101641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,027 DEBUG Processing 188/680 atomic regions from SNP 56287 to 56888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,132 DEBUG Processing 17/664 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,144 DEBUG Processing 678/726 atomic regions from SNP 203236 to 203836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,259 DEBUG Processing 338/721 atomic regions from SNP 101341 to 101941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,270 DEBUG Processing 189/680 atomic regions from SNP 56588 to 57189 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,355 DEBUG Processing 18/664 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,384 DEBUG Processing 679/726 atomic regions from SNP 203536 to 204136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,472 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:54:05,473 DEBUG chr15: Signal quantile: 0.993. signal threshold: 17. Best RMSEA: 0.013 2025-01-31 09:54:05,512 DEBUG Processing 190/680 atomic regions from SNP 56889 to 57490 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,513 DEBUG Processing 339/721 atomic regions from SNP 101641 to 102241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,584 DEBUG Processing 19/664 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,624 DEBUG Processing 680/726 atomic regions from SNP 203836 to 204436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,750 DEBUG Processing 191/680 atomic regions from SNP 57190 to 57791 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,751 DEBUG Processing 340/721 atomic regions from SNP 101941 to 102541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,820 DEBUG Processing 20/664 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,868 DEBUG Processing 681/726 atomic regions from SNP 204136 to 204736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,991 DEBUG Processing 192/680 atomic regions from SNP 57491 to 58092 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,005 DEBUG Processing 341/721 atomic regions from SNP 102241 to 102841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,015 DEBUG chr16 total SNP count: 169256 2025-01-31 09:54:06,015 DEBUG chr16 length: 98207768 2025-01-31 09:54:06,015 DEBUG ----------------------------------------- 2025-01-31 09:54:06,015 INFO Processing SNPs in chr16 2025-01-31 09:54:06,058 DEBUG Processing 21/664 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,113 DEBUG Processing 682/726 atomic regions from SNP 204436 to 205036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,185 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 169256)] 2025-01-31 09:54:06,230 DEBUG Processing 193/680 atomic regions from SNP 57792 to 58393 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,245 DEBUG Processing 342/721 atomic regions from SNP 102541 to 103141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,298 DEBUG Processing 22/664 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,302 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:06,352 DEBUG Processing 683/726 atomic regions from SNP 204736 to 205336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,466 DEBUG Processing 194/680 atomic regions from SNP 58093 to 58694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,492 DEBUG Processing 343/721 atomic regions from SNP 102841 to 103441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,539 DEBUG Processing 23/664 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,590 DEBUG Processing 684/726 atomic regions from SNP 205036 to 205636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,702 DEBUG Processing 195/680 atomic regions from SNP 58394 to 58995 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,730 DEBUG Processing 344/721 atomic regions from SNP 103141 to 103741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,776 DEBUG Processing 24/664 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,829 DEBUG Processing 685/726 atomic regions from SNP 205336 to 205936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,931 DEBUG Processing 196/680 atomic regions from SNP 58695 to 59296 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,960 DEBUG Processing 345/721 atomic regions from SNP 103441 to 104041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,009 DEBUG Processing 25/664 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,065 DEBUG Processing 686/726 atomic regions from SNP 205636 to 206236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,147 DEBUG Processing 197/680 atomic regions from SNP 58996 to 59597 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,184 DEBUG Processing 346/721 atomic regions from SNP 103741 to 104341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,234 DEBUG Processing 26/664 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,298 DEBUG Processing 687/726 atomic regions from SNP 205936 to 206536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,366 DEBUG Processing 198/680 atomic regions from SNP 59297 to 59898 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,402 DEBUG Processing 347/721 atomic regions from SNP 104041 to 104641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,461 DEBUG Processing 27/664 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,536 DEBUG chr15 total SNP count: 180569 2025-01-31 09:54:07,536 DEBUG chr15 length: 104043685 2025-01-31 09:54:07,536 DEBUG ----------------------------------------- 2025-01-31 09:54:07,536 INFO Processing SNPs in chr15 2025-01-31 09:54:07,540 DEBUG Processing 688/726 atomic regions from SNP 206236 to 206836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,600 DEBUG Processing 199/680 atomic regions from SNP 59598 to 60199 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,624 DEBUG Processing 348/721 atomic regions from SNP 104341 to 104941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,682 DEBUG Processing 28/664 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,719 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 180569)] 2025-01-31 09:54:07,777 DEBUG Processing 689/726 atomic regions from SNP 206536 to 207136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,837 DEBUG Processing 200/680 atomic regions from SNP 59899 to 60500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,846 DEBUG Processing 349/721 atomic regions from SNP 104641 to 105241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,849 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:07,910 DEBUG Processing 29/664 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,016 DEBUG Processing 690/726 atomic regions from SNP 206836 to 207436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,071 DEBUG Processing 350/721 atomic regions from SNP 104941 to 105541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,095 DEBUG Processing 201/680 atomic regions from SNP 60200 to 60801 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,124 DEBUG Processing 30/664 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,250 DEBUG Processing 691/726 atomic regions from SNP 207136 to 207736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,292 DEBUG Processing 351/721 atomic regions from SNP 105241 to 105841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,342 DEBUG Processing 31/664 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,350 DEBUG Processing 202/680 atomic regions from SNP 60501 to 61102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,485 DEBUG Processing 692/726 atomic regions from SNP 207436 to 208036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,515 DEBUG Processing 352/721 atomic regions from SNP 105541 to 106141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,567 DEBUG Processing 32/664 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,583 DEBUG Processing 203/680 atomic regions from SNP 60802 to 61403 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,716 DEBUG Processing 693/726 atomic regions from SNP 207736 to 208336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,742 DEBUG Processing 353/721 atomic regions from SNP 105841 to 106441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,808 DEBUG Processing 204/680 atomic regions from SNP 61103 to 61704 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,811 DEBUG Processing 33/664 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,943 DEBUG Processing 694/726 atomic regions from SNP 208036 to 208636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,981 DEBUG Processing 354/721 atomic regions from SNP 106141 to 106741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,042 DEBUG Processing 205/680 atomic regions from SNP 61404 to 62005 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,047 DEBUG Processing 34/664 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,185 DEBUG Processing 695/726 atomic regions from SNP 208336 to 208936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,213 DEBUG Processing 355/721 atomic regions from SNP 106441 to 107041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,269 DEBUG Processing 35/664 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,295 DEBUG Processing 206/680 atomic regions from SNP 61705 to 62306 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,431 DEBUG Processing 696/726 atomic regions from SNP 208636 to 209236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,447 DEBUG Processing 356/721 atomic regions from SNP 106741 to 107341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,491 DEBUG Processing 36/664 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,524 DEBUG Processing 207/680 atomic regions from SNP 62006 to 62607 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,674 DEBUG Processing 357/721 atomic regions from SNP 107041 to 107641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,690 DEBUG Processing 697/726 atomic regions from SNP 208936 to 209536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,720 DEBUG Processing 37/664 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,756 DEBUG Processing 208/680 atomic regions from SNP 62307 to 62908 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,903 DEBUG Processing 358/721 atomic regions from SNP 107341 to 107941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,945 DEBUG Processing 38/664 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,947 DEBUG Processing 698/726 atomic regions from SNP 209236 to 209836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,991 DEBUG Processing 209/680 atomic regions from SNP 62608 to 63209 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,120 DEBUG Processing 359/721 atomic regions from SNP 107641 to 108241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,169 DEBUG Processing 39/664 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,195 DEBUG Processing 699/726 atomic regions from SNP 209536 to 210136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,214 DEBUG Processing 210/680 atomic regions from SNP 62909 to 63510 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,333 DEBUG Processing 360/721 atomic regions from SNP 107941 to 108541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,393 DEBUG Processing 40/664 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,432 DEBUG Processing 700/726 atomic regions from SNP 209836 to 210436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,438 DEBUG Processing 211/680 atomic regions from SNP 63210 to 63811 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,540 DEBUG Processing 361/721 atomic regions from SNP 108241 to 108841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,618 DEBUG Processing 41/664 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,663 DEBUG Processing 212/680 atomic regions from SNP 63511 to 64112 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,685 DEBUG Processing 701/726 atomic regions from SNP 210136 to 210736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,745 DEBUG Processing 362/721 atomic regions from SNP 108541 to 109141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,841 DEBUG Processing 42/664 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,892 DEBUG Processing 213/680 atomic regions from SNP 63812 to 64413 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,944 DEBUG Processing 702/726 atomic regions from SNP 210436 to 211036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,954 DEBUG Processing 363/721 atomic regions from SNP 108841 to 109441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,061 DEBUG Processing 43/664 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,122 DEBUG Processing 214/680 atomic regions from SNP 64113 to 64714 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,171 DEBUG Processing 364/721 atomic regions from SNP 109141 to 109741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,181 DEBUG Processing 703/726 atomic regions from SNP 210736 to 211336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,278 DEBUG Processing 44/664 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,351 DEBUG Processing 215/680 atomic regions from SNP 64414 to 65015 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,388 DEBUG Processing 365/721 atomic regions from SNP 109441 to 110041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,421 DEBUG Processing 704/726 atomic regions from SNP 211036 to 211636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,494 DEBUG Processing 45/664 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,576 DEBUG Processing 216/680 atomic regions from SNP 64715 to 65316 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,608 DEBUG Processing 366/721 atomic regions from SNP 109741 to 110341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,671 DEBUG Processing 705/726 atomic regions from SNP 211336 to 211936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,711 DEBUG Processing 46/664 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,802 DEBUG Processing 217/680 atomic regions from SNP 65016 to 65617 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,828 DEBUG Processing 367/721 atomic regions from SNP 110041 to 110641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,904 DEBUG Processing 706/726 atomic regions from SNP 211636 to 212236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,925 DEBUG Processing 47/664 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,035 DEBUG Processing 218/680 atomic regions from SNP 65317 to 65918 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,054 DEBUG Processing 368/721 atomic regions from SNP 110341 to 110941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,140 DEBUG Processing 48/664 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,142 DEBUG Processing 707/726 atomic regions from SNP 211936 to 212536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,270 DEBUG Processing 219/680 atomic regions from SNP 65618 to 66219 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,277 DEBUG Processing 369/721 atomic regions from SNP 110641 to 111241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,358 DEBUG Processing 49/664 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,376 DEBUG Processing 708/726 atomic regions from SNP 212236 to 212836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,500 DEBUG Processing 370/721 atomic regions from SNP 110941 to 111541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,517 DEBUG Processing 220/680 atomic regions from SNP 65919 to 66520 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,574 DEBUG Processing 50/664 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,619 DEBUG Processing 709/726 atomic regions from SNP 212536 to 213136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,720 DEBUG Processing 371/721 atomic regions from SNP 111241 to 111841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,759 DEBUG Processing 221/680 atomic regions from SNP 66220 to 66821 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,794 DEBUG Processing 51/664 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,870 DEBUG Processing 710/726 atomic regions from SNP 212836 to 213436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,937 DEBUG Processing 372/721 atomic regions from SNP 111541 to 112141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,999 DEBUG Processing 222/680 atomic regions from SNP 66521 to 67122 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,015 DEBUG Processing 52/664 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,112 DEBUG Processing 711/726 atomic regions from SNP 213136 to 213736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,151 DEBUG Processing 373/721 atomic regions from SNP 111841 to 112441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,231 DEBUG Processing 223/680 atomic regions from SNP 66822 to 67423 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,239 DEBUG Processing 53/664 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,363 DEBUG Processing 374/721 atomic regions from SNP 112141 to 112741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,365 DEBUG Processing 712/726 atomic regions from SNP 213436 to 214036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,459 DEBUG Processing 54/664 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,462 DEBUG Processing 224/680 atomic regions from SNP 67123 to 67724 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,580 DEBUG Processing 375/721 atomic regions from SNP 112441 to 113041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,617 DEBUG Processing 713/726 atomic regions from SNP 213736 to 214336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,682 DEBUG Processing 55/664 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,690 DEBUG Processing 225/680 atomic regions from SNP 67424 to 68025 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,804 DEBUG Processing 376/721 atomic regions from SNP 112741 to 113341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,871 DEBUG Processing 714/726 atomic regions from SNP 214036 to 214636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,895 DEBUG Processing 56/664 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,919 DEBUG Processing 226/680 atomic regions from SNP 67725 to 68326 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,028 DEBUG Processing 377/721 atomic regions from SNP 113041 to 113641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,111 DEBUG Processing 57/664 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,112 DEBUG Processing 715/726 atomic regions from SNP 214336 to 214936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,137 DEBUG Processing 227/680 atomic regions from SNP 68026 to 68627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,248 DEBUG Processing 378/721 atomic regions from SNP 113341 to 113941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,336 DEBUG Processing 58/664 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,355 DEBUG Processing 716/726 atomic regions from SNP 214636 to 215236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,365 DEBUG Processing 228/680 atomic regions from SNP 68327 to 68927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,464 DEBUG Processing 379/721 atomic regions from SNP 113641 to 114241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,562 DEBUG Processing 59/664 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,588 DEBUG Processing 717/726 atomic regions from SNP 214936 to 215536 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,593 DEBUG Processing 229/680 atomic regions from SNP 68627 to 69227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,681 DEBUG Processing 380/721 atomic regions from SNP 113941 to 114541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,791 DEBUG Processing 60/664 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,817 DEBUG Processing 718/726 atomic regions from SNP 215236 to 215836 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,824 DEBUG Processing 230/680 atomic regions from SNP 68927 to 69527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,895 DEBUG Processing 381/721 atomic regions from SNP 114241 to 114841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,023 DEBUG Processing 61/664 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,046 DEBUG Processing 719/726 atomic regions from SNP 215536 to 216136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,061 DEBUG Processing 231/680 atomic regions from SNP 69227 to 69827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,115 DEBUG Processing 382/721 atomic regions from SNP 114541 to 115141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,253 DEBUG Processing 62/664 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,273 DEBUG Processing 720/726 atomic regions from SNP 215836 to 216436 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,297 DEBUG Processing 232/680 atomic regions from SNP 69527 to 70127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,337 DEBUG Processing 383/721 atomic regions from SNP 114841 to 115441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,484 DEBUG Processing 63/664 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,515 DEBUG Processing 721/726 atomic regions from SNP 216136 to 216736 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,537 DEBUG Processing 233/680 atomic regions from SNP 69827 to 70427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,567 DEBUG Processing 384/721 atomic regions from SNP 115141 to 115741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,707 DEBUG Processing 64/664 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,746 DEBUG Processing 722/726 atomic regions from SNP 216436 to 217036 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,789 DEBUG Processing 385/721 atomic regions from SNP 115441 to 116041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,792 DEBUG Processing 234/680 atomic regions from SNP 70127 to 70727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,927 DEBUG Processing 65/664 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,978 DEBUG Processing 723/726 atomic regions from SNP 216736 to 217336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,013 DEBUG Processing 386/721 atomic regions from SNP 115741 to 116341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,037 DEBUG Processing 235/680 atomic regions from SNP 70427 to 71027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,148 DEBUG Processing 66/664 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,214 DEBUG Processing 724/726 atomic regions from SNP 217036 to 217636 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,235 DEBUG Processing 387/721 atomic regions from SNP 116041 to 116641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,285 DEBUG Processing 236/680 atomic regions from SNP 70727 to 71327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,367 DEBUG Processing 67/664 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,440 DEBUG Processing 725/726 atomic regions from SNP 217336 to 217936 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,454 DEBUG Processing 388/721 atomic regions from SNP 116341 to 116941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,521 DEBUG Processing 237/680 atomic regions from SNP 71027 to 71627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,587 DEBUG Processing 68/664 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,667 DEBUG Processing 726/726 atomic regions from SNP 217636 to 218236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,673 DEBUG Processing 389/721 atomic regions from SNP 116641 to 117241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,748 DEBUG Processing 238/680 atomic regions from SNP 71327 to 71927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,811 DEBUG Processing 69/664 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,819 DEBUG Unique SNPs positions in subchromosome 1: 218237 2025-01-31 09:54:16,896 DEBUG Processing 390/721 atomic regions from SNP 116941 to 117541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,970 DEBUG Processing 239/680 atomic regions from SNP 71627 to 72227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,034 DEBUG Processing 70/664 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,109 DEBUG Processing 391/721 atomic regions from SNP 117241 to 117841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,191 DEBUG Processing 240/680 atomic regions from SNP 71927 to 72527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,258 DEBUG Processing 71/664 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,324 DEBUG Processing 392/721 atomic regions from SNP 117541 to 118141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,412 DEBUG Processing 241/680 atomic regions from SNP 72227 to 72827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,476 DEBUG Processing 72/664 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,550 DEBUG Processing 393/721 atomic regions from SNP 117841 to 118441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,631 DEBUG Processing 242/680 atomic regions from SNP 72527 to 73127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,688 DEBUG Processing 73/664 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,798 DEBUG Processing 394/721 atomic regions from SNP 118141 to 118741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,870 DEBUG Processing 243/680 atomic regions from SNP 72827 to 73427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,902 DEBUG Processing 74/664 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,046 DEBUG Processing 395/721 atomic regions from SNP 118441 to 119041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,119 DEBUG Processing 75/664 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,123 DEBUG Processing 244/680 atomic regions from SNP 73127 to 73727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,283 DEBUG Processing 396/721 atomic regions from SNP 118741 to 119341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,338 DEBUG Processing 76/664 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,349 DEBUG Processing 245/680 atomic regions from SNP 73427 to 74027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,520 DEBUG Processing 397/721 atomic regions from SNP 119041 to 119641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,561 DEBUG Processing 77/664 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,578 DEBUG Processing 246/680 atomic regions from SNP 73727 to 74327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,763 DEBUG Processing 398/721 atomic regions from SNP 119341 to 119941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,783 DEBUG Processing 78/664 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,802 DEBUG Processing 247/680 atomic regions from SNP 74027 to 74627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,006 DEBUG Processing 79/664 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,016 DEBUG Processing 399/721 atomic regions from SNP 119641 to 120241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,027 DEBUG Processing 248/680 atomic regions from SNP 74327 to 74927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,219 DEBUG Processing 80/664 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,253 DEBUG Processing 249/680 atomic regions from SNP 74627 to 75227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,261 DEBUG Processing 400/721 atomic regions from SNP 119941 to 120541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,432 DEBUG Processing 81/664 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,472 DEBUG Processing 250/680 atomic regions from SNP 74927 to 75527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,498 DEBUG Processing 401/721 atomic regions from SNP 120241 to 120841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,652 DEBUG Processing 82/664 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,714 DEBUG Processing 251/680 atomic regions from SNP 75227 to 75827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,736 DEBUG Processing 402/721 atomic regions from SNP 120541 to 121141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,874 DEBUG Processing 83/664 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,961 DEBUG Processing 252/680 atomic regions from SNP 75527 to 76127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,975 DEBUG Processing 403/721 atomic regions from SNP 120841 to 121441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,121 DEBUG Processing 84/664 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,212 DEBUG Processing 253/680 atomic regions from SNP 75827 to 76427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,244 DEBUG Processing 404/721 atomic regions from SNP 121141 to 121741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,333 DEBUG Processing 85/664 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,431 DEBUG Processing 254/680 atomic regions from SNP 76127 to 76727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,482 DEBUG Processing 405/721 atomic regions from SNP 121441 to 122041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,563 DEBUG Processing 86/664 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,655 DEBUG Processing 255/680 atomic regions from SNP 76427 to 77027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,699 DEBUG Processing 406/721 atomic regions from SNP 121741 to 122341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,789 DEBUG Processing 87/664 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,869 DEBUG Processing 256/680 atomic regions from SNP 76727 to 77327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,911 DEBUG Processing 407/721 atomic regions from SNP 122041 to 122641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,001 DEBUG Processing 88/664 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,079 DEBUG Processing 257/680 atomic regions from SNP 77027 to 77627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,122 DEBUG Processing 408/721 atomic regions from SNP 122341 to 122941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,210 DEBUG Processing 89/664 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,313 DEBUG Processing 258/680 atomic regions from SNP 77327 to 77927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,335 DEBUG Processing 409/721 atomic regions from SNP 122641 to 123241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,417 DEBUG Processing 90/664 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,543 DEBUG Processing 410/721 atomic regions from SNP 122941 to 123541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,556 DEBUG Processing 259/680 atomic regions from SNP 77627 to 78227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,612 DEBUG Subchromosome time: 205.39261907711625, subchromosome SNPs: 218237 2025-01-31 09:54:21,612 DEBUG Estimated BADs: [0.45, 1.34, 0.67, 5.35, 1.34, 0.67, 0.33, 1.34, 4.01, 1.34, 2.68, 1.34, 0.67, 1.34, 0.33, 1.34, 2.68, 1.34, 2.68] SNP counts: [17150, 3437, 9070, 2654, 6885, 21628, 3308, 6189, 2499, 22820, 16798, 27607, 15798, 757, 5632, 22804, 8116, 15829, 9256] SNP IDs counts: [17150, 3437, 9070, 2654, 6885, 21628, 3308, 6189, 2499, 22820, 16798, 27607, 15798, 757, 5632, 22804, 8116, 15829, 9256] Critical gap: 597353bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.29Mbp, 15.23Mbp, 20.60Mbp, 22.00Mbp, 25.88Mbp, 37.81Mbp, 39.77Mbp, 43.10Mbp, 44.41Mbp, 56.70Mbp, 65.52Mbp, 80.64Mbp, 90.11Mbp, 90.55Mbp, 93.88Mbp, 106.17Mbp, 110.69Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:54:21,612 DEBUG chr9 time: 205.39309419319034 s 2025-01-31 09:54:21,629 DEBUG Processing 91/664 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,741 DEBUG chr9: Fitting background model for 19 segments 2025-01-31 09:54:21,751 DEBUG Processing 411/721 atomic regions from SNP 123241 to 123841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,768 DEBUG Processing 260/680 atomic regions from SNP 77927 to 78527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,846 DEBUG Processing 92/664 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,968 DEBUG Processing 412/721 atomic regions from SNP 123541 to 124141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,979 DEBUG Processing 261/680 atomic regions from SNP 78227 to 78827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,061 DEBUG Processing 93/664 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,188 DEBUG Processing 262/680 atomic regions from SNP 78527 to 79127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,194 DEBUG Processing 413/721 atomic regions from SNP 123841 to 124441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,265 DEBUG Processing 94/664 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,405 DEBUG Processing 263/680 atomic regions from SNP 78827 to 79427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,424 DEBUG Processing 414/721 atomic regions from SNP 124141 to 124741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,472 DEBUG Processing 95/664 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,629 DEBUG Processing 264/680 atomic regions from SNP 79127 to 79727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,671 DEBUG Processing 415/721 atomic regions from SNP 124441 to 125041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,684 DEBUG Processing 96/664 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,852 DEBUG Processing 265/680 atomic regions from SNP 79427 to 80027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,896 DEBUG Processing 97/664 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,902 DEBUG Processing 416/721 atomic regions from SNP 124741 to 125341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,075 DEBUG Processing 266/680 atomic regions from SNP 79727 to 80327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,123 DEBUG Processing 98/664 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,130 DEBUG Processing 417/721 atomic regions from SNP 125041 to 125641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,299 DEBUG Processing 267/680 atomic regions from SNP 80027 to 80627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,337 DEBUG Processing 99/664 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,363 DEBUG Processing 418/721 atomic regions from SNP 125341 to 125941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,529 DEBUG Processing 268/680 atomic regions from SNP 80327 to 80927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,546 DEBUG Processing 100/664 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,609 DEBUG Processing 419/721 atomic regions from SNP 125641 to 126241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,758 DEBUG Processing 101/664 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,763 DEBUG Processing 269/680 atomic regions from SNP 80627 to 81227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,854 DEBUG Processing 420/721 atomic regions from SNP 125941 to 126541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,969 DEBUG Processing 102/664 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,009 DEBUG Processing 270/680 atomic regions from SNP 80927 to 81527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,077 DEBUG Processing 421/721 atomic regions from SNP 126241 to 126841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,204 DEBUG Processing 103/664 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,261 DEBUG Processing 271/680 atomic regions from SNP 81227 to 81827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,307 DEBUG Processing 422/721 atomic regions from SNP 126541 to 127141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,433 DEBUG Processing 104/664 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,511 DEBUG Processing 272/680 atomic regions from SNP 81527 to 82127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,540 DEBUG Processing 423/721 atomic regions from SNP 126841 to 127441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,652 DEBUG Processing 105/664 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,754 DEBUG Processing 273/680 atomic regions from SNP 81827 to 82427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,764 DEBUG Processing 424/721 atomic regions from SNP 127141 to 127741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,875 DEBUG Processing 106/664 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,980 DEBUG Processing 274/680 atomic regions from SNP 82127 to 82727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,994 DEBUG Processing 425/721 atomic regions from SNP 127441 to 128041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,088 DEBUG Processing 107/664 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,196 DEBUG Processing 275/680 atomic regions from SNP 82427 to 83027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,222 DEBUG Processing 426/721 atomic regions from SNP 127741 to 128341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,298 DEBUG Processing 108/664 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,407 DEBUG Processing 276/680 atomic regions from SNP 82727 to 83327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,451 DEBUG Processing 427/721 atomic regions from SNP 128041 to 128641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,505 DEBUG Processing 109/664 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,621 DEBUG Processing 277/680 atomic regions from SNP 83027 to 83627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,679 DEBUG Processing 428/721 atomic regions from SNP 128341 to 128941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,708 DEBUG Processing 110/664 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,841 DEBUG Processing 278/680 atomic regions from SNP 83327 to 83927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,910 DEBUG Processing 111/664 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,927 DEBUG Processing 429/721 atomic regions from SNP 128641 to 129241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,065 DEBUG Processing 279/680 atomic regions from SNP 83627 to 84227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,123 DEBUG Processing 112/664 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,148 DEBUG Processing 430/721 atomic regions from SNP 128941 to 129541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,289 DEBUG Processing 280/680 atomic regions from SNP 83927 to 84527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,334 DEBUG Processing 113/664 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,395 DEBUG Processing 431/721 atomic regions from SNP 129241 to 129841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,517 DEBUG Processing 281/680 atomic regions from SNP 84227 to 84827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,551 DEBUG Processing 114/664 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,634 DEBUG Processing 432/721 atomic regions from SNP 129541 to 130141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,736 DEBUG Processing 282/680 atomic regions from SNP 84527 to 85127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,763 DEBUG Processing 115/664 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,801 DEBUG Segmenting atomic regions: 2025-01-31 09:54:26,877 DEBUG Processing 1/563 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,900 DEBUG Processing 433/721 atomic regions from SNP 129841 to 130441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,956 DEBUG Processing 283/680 atomic regions from SNP 84827 to 85427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,978 DEBUG Processing 116/664 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,086 DEBUG Processing 2/563 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,160 DEBUG Processing 434/721 atomic regions from SNP 130141 to 130741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,187 DEBUG Processing 117/664 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,191 DEBUG Processing 284/680 atomic regions from SNP 85127 to 85727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,295 DEBUG Processing 3/563 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,402 DEBUG Processing 118/664 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,404 DEBUG Processing 435/721 atomic regions from SNP 130441 to 131041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,435 DEBUG Processing 285/680 atomic regions from SNP 85427 to 86027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,515 DEBUG Processing 4/563 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,616 DEBUG Processing 119/664 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,654 DEBUG Processing 436/721 atomic regions from SNP 130741 to 131341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,676 DEBUG Processing 286/680 atomic regions from SNP 85727 to 86327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,736 DEBUG Processing 5/563 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,834 DEBUG Processing 120/664 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,884 DEBUG Processing 437/721 atomic regions from SNP 131041 to 131641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,908 DEBUG Processing 287/680 atomic regions from SNP 86027 to 86627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,944 DEBUG Processing 6/563 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,052 DEBUG Processing 121/664 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,115 DEBUG Processing 438/721 atomic regions from SNP 131341 to 131941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,146 DEBUG Processing 288/680 atomic regions from SNP 86327 to 86927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,172 DEBUG Processing 7/563 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,262 DEBUG Processing 122/664 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,361 DEBUG Processing 439/721 atomic regions from SNP 131641 to 132241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,372 DEBUG Processing 289/680 atomic regions from SNP 86627 to 87227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,414 DEBUG Processing 8/563 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,468 DEBUG Processing 123/664 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,593 DEBUG Processing 290/680 atomic regions from SNP 86927 to 87527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,601 DEBUG Processing 440/721 atomic regions from SNP 131941 to 132541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,654 DEBUG Processing 9/563 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,678 DEBUG Processing 124/664 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,806 DEBUG Processing 291/680 atomic regions from SNP 87227 to 87827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,825 DEBUG Processing 441/721 atomic regions from SNP 132241 to 132841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,893 DEBUG Processing 125/664 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,894 DEBUG Processing 10/563 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,028 DEBUG Processing 292/680 atomic regions from SNP 87527 to 88127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,049 DEBUG Processing 442/721 atomic regions from SNP 132541 to 133141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,105 DEBUG Processing 126/664 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,123 DEBUG Processing 11/563 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,242 DEBUG Processing 293/680 atomic regions from SNP 87827 to 88427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,271 DEBUG Processing 443/721 atomic regions from SNP 132841 to 133441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,324 DEBUG Processing 127/664 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,357 DEBUG Processing 12/563 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,448 DEBUG Processing 294/680 atomic regions from SNP 88127 to 88727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,491 DEBUG Processing 444/721 atomic regions from SNP 133141 to 133741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,562 DEBUG Processing 128/664 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,574 DEBUG Processing 13/563 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,655 DEBUG Processing 295/680 atomic regions from SNP 88427 to 89027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,717 DEBUG Segmenting atomic regions: 2025-01-31 09:54:29,729 DEBUG Processing 445/721 atomic regions from SNP 133441 to 134041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,780 DEBUG Processing 129/664 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,780 DEBUG Processing 14/563 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,798 DEBUG Processing 1/600 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,863 DEBUG Processing 296/680 atomic regions from SNP 88727 to 89327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,984 DEBUG Processing 446/721 atomic regions from SNP 133741 to 134341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,988 DEBUG Processing 15/563 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,997 DEBUG Processing 130/664 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,003 DEBUG Processing 2/600 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,072 DEBUG Processing 297/680 atomic regions from SNP 89027 to 89627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,195 DEBUG Processing 16/563 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,208 DEBUG Processing 3/600 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,211 DEBUG Processing 131/664 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,224 DEBUG Processing 447/721 atomic regions from SNP 134041 to 134641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,284 DEBUG Processing 298/680 atomic regions from SNP 89327 to 89927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,398 DEBUG Processing 17/563 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,412 DEBUG Processing 4/600 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,424 DEBUG Processing 132/664 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,468 DEBUG Processing 448/721 atomic regions from SNP 134341 to 134941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,504 DEBUG Processing 299/680 atomic regions from SNP 89627 to 90227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,605 DEBUG Processing 18/563 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,614 DEBUG Processing 5/600 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,636 DEBUG Processing 133/664 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,722 DEBUG Processing 449/721 atomic regions from SNP 134641 to 135241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,731 DEBUG Processing 300/680 atomic regions from SNP 89927 to 90527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,811 DEBUG Processing 19/563 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,816 DEBUG Processing 6/600 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,844 DEBUG Processing 134/664 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,962 DEBUG Processing 301/680 atomic regions from SNP 90227 to 90827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,974 DEBUG Processing 450/721 atomic regions from SNP 134941 to 135541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,021 DEBUG Processing 20/563 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,024 DEBUG Processing 7/600 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,057 DEBUG Processing 135/664 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,195 DEBUG Processing 302/680 atomic regions from SNP 90527 to 91127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,223 DEBUG Processing 451/721 atomic regions from SNP 135241 to 135841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,234 DEBUG Processing 21/563 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,234 DEBUG Processing 8/600 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,267 DEBUG Processing 136/664 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,443 DEBUG Processing 303/680 atomic regions from SNP 90827 to 91427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,444 DEBUG Processing 9/600 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,448 DEBUG Processing 22/563 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,478 DEBUG Processing 452/721 atomic regions from SNP 135541 to 136141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,485 DEBUG Processing 137/664 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,650 DEBUG Processing 10/600 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,662 DEBUG Processing 23/563 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,701 DEBUG Processing 304/680 atomic regions from SNP 91127 to 91727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,702 DEBUG Processing 138/664 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,712 DEBUG Processing 453/721 atomic regions from SNP 135841 to 136441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,847 DEBUG Processing 11/600 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,872 DEBUG Processing 24/563 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,912 DEBUG Processing 139/664 atomic regions from SNP 41538 to 42138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,944 DEBUG Processing 454/721 atomic regions from SNP 136141 to 136741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,946 DEBUG Processing 305/680 atomic regions from SNP 91427 to 92027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,058 DEBUG Processing 12/600 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,078 DEBUG Processing 25/563 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,126 DEBUG Processing 140/664 atomic regions from SNP 41838 to 42438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,178 DEBUG Processing 455/721 atomic regions from SNP 136441 to 137041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,184 DEBUG Processing 306/680 atomic regions from SNP 91727 to 92327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,276 DEBUG Processing 13/600 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,283 DEBUG Processing 26/563 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,340 DEBUG Processing 141/664 atomic regions from SNP 42138 to 42738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,413 DEBUG Processing 456/721 atomic regions from SNP 136741 to 137341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,429 DEBUG Processing 307/680 atomic regions from SNP 92027 to 92627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,482 DEBUG Processing 14/600 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,488 DEBUG Processing 27/563 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,554 DEBUG Processing 142/664 atomic regions from SNP 42438 to 43038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,639 DEBUG Processing 457/721 atomic regions from SNP 137041 to 137641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,683 DEBUG Processing 308/680 atomic regions from SNP 92327 to 92927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,688 DEBUG Processing 15/600 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,698 DEBUG Processing 28/563 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,769 DEBUG Processing 143/664 atomic regions from SNP 42738 to 43338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,862 DEBUG Processing 458/721 atomic regions from SNP 137341 to 137941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,890 DEBUG Processing 16/600 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,909 DEBUG Processing 29/563 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,936 DEBUG Processing 309/680 atomic regions from SNP 92627 to 93227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,985 DEBUG Processing 144/664 atomic regions from SNP 43038 to 43638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,097 DEBUG Processing 459/721 atomic regions from SNP 137641 to 138241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,099 DEBUG Processing 17/600 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,117 DEBUG Processing 30/563 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,192 DEBUG Processing 310/680 atomic regions from SNP 92927 to 93527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,203 DEBUG Processing 145/664 atomic regions from SNP 43338 to 43938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,306 DEBUG Processing 18/600 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,329 DEBUG Processing 31/563 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,347 DEBUG Processing 460/721 atomic regions from SNP 137941 to 138541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,418 DEBUG Processing 146/664 atomic regions from SNP 43638 to 44238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,426 DEBUG Processing 311/680 atomic regions from SNP 93227 to 93827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,510 DEBUG Processing 19/600 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,556 DEBUG Processing 32/563 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,583 DEBUG Processing 461/721 atomic regions from SNP 138241 to 138841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,635 DEBUG Processing 147/664 atomic regions from SNP 43938 to 44538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,646 DEBUG Processing 312/680 atomic regions from SNP 93527 to 94127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,714 DEBUG Processing 20/600 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,796 DEBUG Processing 33/563 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,816 DEBUG Processing 462/721 atomic regions from SNP 138541 to 139141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,868 DEBUG Processing 313/680 atomic regions from SNP 93827 to 94427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,880 DEBUG Processing 148/664 atomic regions from SNP 44238 to 44838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,914 DEBUG Processing 21/600 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,027 DEBUG Processing 34/563 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,049 DEBUG Processing 463/721 atomic regions from SNP 138841 to 139441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,102 DEBUG Processing 314/680 atomic regions from SNP 94127 to 94727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,123 DEBUG Processing 22/600 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,143 DEBUG Processing 149/664 atomic regions from SNP 44538 to 45138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,245 DEBUG Processing 35/563 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,285 DEBUG Processing 464/721 atomic regions from SNP 139141 to 139741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,332 DEBUG Processing 315/680 atomic regions from SNP 94427 to 95027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,339 DEBUG Processing 23/600 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,374 DEBUG Processing 150/664 atomic regions from SNP 44838 to 45438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,459 DEBUG Processing 36/563 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,516 DEBUG Processing 465/721 atomic regions from SNP 139441 to 140041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,550 DEBUG Processing 24/600 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,561 DEBUG Processing 316/680 atomic regions from SNP 94727 to 95327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,600 DEBUG Processing 151/664 atomic regions from SNP 45138 to 45738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,663 DEBUG Processing 37/563 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,735 DEBUG Processing 466/721 atomic regions from SNP 139741 to 140341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,761 DEBUG Processing 25/600 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,798 DEBUG Processing 317/680 atomic regions from SNP 95027 to 95627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,824 DEBUG Processing 152/664 atomic regions from SNP 45438 to 46038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,869 DEBUG Processing 38/563 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,955 DEBUG Processing 467/721 atomic regions from SNP 140041 to 140641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,967 DEBUG Processing 26/600 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,023 DEBUG Processing 318/680 atomic regions from SNP 95327 to 95927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,051 DEBUG Processing 153/664 atomic regions from SNP 45738 to 46338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,073 DEBUG Processing 39/563 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,166 DEBUG Processing 27/600 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,172 DEBUG Processing 468/721 atomic regions from SNP 140341 to 140941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,247 DEBUG Processing 319/680 atomic regions from SNP 95627 to 96227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,279 DEBUG Processing 154/664 atomic regions from SNP 46038 to 46638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,281 DEBUG Processing 40/563 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,365 DEBUG Processing 28/600 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,392 DEBUG Processing 469/721 atomic regions from SNP 140641 to 141241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,465 DEBUG Processing 320/680 atomic regions from SNP 95927 to 96527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,489 DEBUG Processing 41/563 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,504 DEBUG Processing 155/664 atomic regions from SNP 46338 to 46938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,567 DEBUG Processing 29/600 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,616 DEBUG Processing 470/721 atomic regions from SNP 140941 to 141541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,679 DEBUG Processing 321/680 atomic regions from SNP 96227 to 96827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,694 DEBUG Processing 42/563 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,739 DEBUG Processing 156/664 atomic regions from SNP 46638 to 47238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,781 DEBUG Processing 30/600 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,840 DEBUG Processing 471/721 atomic regions from SNP 141241 to 141841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,892 DEBUG Processing 322/680 atomic regions from SNP 96527 to 97127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,896 DEBUG Processing 43/563 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,976 DEBUG Processing 157/664 atomic regions from SNP 46938 to 47538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,987 DEBUG Processing 31/600 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,063 DEBUG Processing 472/721 atomic regions from SNP 141541 to 142141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,106 DEBUG Processing 323/680 atomic regions from SNP 96827 to 97427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,116 DEBUG Processing 44/563 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,193 DEBUG Processing 32/600 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,197 DEBUG Processing 158/664 atomic regions from SNP 47238 to 47838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,286 DEBUG Processing 473/721 atomic regions from SNP 141841 to 142441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,325 DEBUG Processing 324/680 atomic regions from SNP 97127 to 97727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,338 DEBUG Processing 45/563 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,405 DEBUG Processing 33/600 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,424 DEBUG Processing 159/664 atomic regions from SNP 47538 to 48138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,505 DEBUG Processing 474/721 atomic regions from SNP 142141 to 142741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,561 DEBUG Processing 46/563 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,562 DEBUG Processing 325/680 atomic regions from SNP 97427 to 98027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,607 DEBUG Processing 34/600 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,639 DEBUG Processing 160/664 atomic regions from SNP 47838 to 48438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,722 DEBUG Processing 475/721 atomic regions from SNP 142441 to 143041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,779 DEBUG Processing 47/563 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,804 DEBUG Processing 326/680 atomic regions from SNP 97727 to 98327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,826 DEBUG Processing 35/600 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,855 DEBUG Processing 161/664 atomic regions from SNP 48138 to 48738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,940 DEBUG Processing 476/721 atomic regions from SNP 142741 to 143341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,000 DEBUG Processing 48/563 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,048 DEBUG Processing 327/680 atomic regions from SNP 98027 to 98627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,057 DEBUG Processing 36/600 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,076 DEBUG Processing 162/664 atomic regions from SNP 48438 to 49038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,161 DEBUG Processing 477/721 atomic regions from SNP 143041 to 143641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,215 DEBUG Processing 49/563 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,259 DEBUG Processing 37/600 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,292 DEBUG Processing 328/680 atomic regions from SNP 98327 to 98927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,293 DEBUG Processing 163/664 atomic regions from SNP 48738 to 49338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,379 DEBUG Processing 478/721 atomic regions from SNP 143341 to 143941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,431 DEBUG Processing 50/563 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,463 DEBUG Processing 38/600 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,515 DEBUG Processing 164/664 atomic regions from SNP 49038 to 49638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,526 DEBUG Processing 329/680 atomic regions from SNP 98627 to 99227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,617 DEBUG Processing 479/721 atomic regions from SNP 143641 to 144241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,638 DEBUG Processing 51/563 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,662 DEBUG Processing 39/600 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,733 DEBUG Processing 165/664 atomic regions from SNP 49338 to 49938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,749 DEBUG Processing 330/680 atomic regions from SNP 98927 to 99527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,854 DEBUG Processing 480/721 atomic regions from SNP 143941 to 144541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,855 DEBUG Processing 52/563 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,865 DEBUG Processing 40/600 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,952 DEBUG Processing 166/664 atomic regions from SNP 49638 to 50238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,983 DEBUG Processing 331/680 atomic regions from SNP 99227 to 99827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,069 DEBUG Processing 41/600 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,078 DEBUG Processing 481/721 atomic regions from SNP 144241 to 144841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,078 DEBUG Processing 53/563 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,180 DEBUG Processing 167/664 atomic regions from SNP 49938 to 50538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,208 DEBUG Processing 332/680 atomic regions from SNP 99527 to 100127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,275 DEBUG Processing 42/600 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,287 DEBUG Processing 54/563 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,309 DEBUG Processing 482/721 atomic regions from SNP 144541 to 145141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,397 DEBUG Processing 168/664 atomic regions from SNP 50238 to 50838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,424 DEBUG Processing 333/680 atomic regions from SNP 99827 to 100427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,475 DEBUG Processing 43/600 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,492 DEBUG Processing 55/563 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,529 DEBUG Processing 483/721 atomic regions from SNP 144841 to 145441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,615 DEBUG Processing 169/664 atomic regions from SNP 50538 to 51138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,651 DEBUG Processing 334/680 atomic regions from SNP 100127 to 100727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,680 DEBUG Processing 44/600 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,687 DEBUG Processing 56/563 atomic regions from SNP 16555 to 17155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,748 DEBUG Processing 484/721 atomic regions from SNP 145141 to 145741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,847 DEBUG Processing 170/664 atomic regions from SNP 50838 to 51438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,883 DEBUG Processing 45/600 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,884 DEBUG Processing 57/563 atomic regions from SNP 16855 to 17455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,899 DEBUG Processing 335/680 atomic regions from SNP 100427 to 101027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,965 DEBUG Processing 485/721 atomic regions from SNP 145441 to 146041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,070 DEBUG Processing 171/664 atomic regions from SNP 51138 to 51738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,082 DEBUG Processing 58/563 atomic regions from SNP 17155 to 17755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,094 DEBUG Processing 46/600 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,154 DEBUG Processing 336/680 atomic regions from SNP 100727 to 101327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,172 DEBUG Processing 486/721 atomic regions from SNP 145741 to 146341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,277 DEBUG Processing 59/563 atomic regions from SNP 17455 to 18055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,286 DEBUG Processing 172/664 atomic regions from SNP 51438 to 52038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,296 DEBUG Processing 47/600 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,379 DEBUG Processing 487/721 atomic regions from SNP 146041 to 146641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,389 DEBUG Processing 337/680 atomic regions from SNP 101027 to 101627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,466 DEBUG Processing 60/563 atomic regions from SNP 17755 to 18355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,494 DEBUG Processing 48/600 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,496 DEBUG Processing 173/664 atomic regions from SNP 51738 to 52338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,588 DEBUG Processing 488/721 atomic regions from SNP 146341 to 146941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,606 DEBUG Processing 338/680 atomic regions from SNP 101327 to 101927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,658 DEBUG Processing 61/563 atomic regions from SNP 18055 to 18655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,690 DEBUG Processing 49/600 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,708 DEBUG Processing 174/664 atomic regions from SNP 52038 to 52638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,808 DEBUG Processing 489/721 atomic regions from SNP 146641 to 147241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,828 DEBUG Processing 339/680 atomic regions from SNP 101627 to 102227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,876 DEBUG Processing 62/563 atomic regions from SNP 18355 to 18955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,892 DEBUG Processing 50/600 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,924 DEBUG Processing 175/664 atomic regions from SNP 52338 to 52938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,035 DEBUG Processing 490/721 atomic regions from SNP 146941 to 147541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,055 DEBUG Processing 340/680 atomic regions from SNP 101927 to 102527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,085 DEBUG Processing 63/563 atomic regions from SNP 18655 to 19255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,096 DEBUG Processing 51/600 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,143 DEBUG Processing 176/664 atomic regions from SNP 52638 to 53238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,278 DEBUG Processing 341/680 atomic regions from SNP 102227 to 102827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,278 DEBUG Processing 491/721 atomic regions from SNP 147241 to 147841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,292 DEBUG Processing 64/563 atomic regions from SNP 18955 to 19555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,308 DEBUG Processing 52/600 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,363 DEBUG Processing 177/664 atomic regions from SNP 52938 to 53538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,493 DEBUG Processing 65/563 atomic regions from SNP 19255 to 19855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,497 DEBUG Processing 342/680 atomic regions from SNP 102527 to 103127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,519 DEBUG Processing 492/721 atomic regions from SNP 147541 to 148141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,528 DEBUG Processing 53/600 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,583 DEBUG Processing 178/664 atomic regions from SNP 53238 to 53838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,690 DEBUG Processing 66/563 atomic regions from SNP 19555 to 20155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,714 DEBUG Processing 343/680 atomic regions from SNP 102827 to 103427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,733 DEBUG Processing 493/721 atomic regions from SNP 147841 to 148441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,758 DEBUG Processing 54/600 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,805 DEBUG Processing 179/664 atomic regions from SNP 53538 to 54138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,904 DEBUG Processing 67/563 atomic regions from SNP 19855 to 20455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,924 DEBUG Processing 344/680 atomic regions from SNP 103127 to 103727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,953 DEBUG Processing 494/721 atomic regions from SNP 148141 to 148741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,990 DEBUG Processing 55/600 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,027 DEBUG Processing 180/664 atomic regions from SNP 53838 to 54438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,110 DEBUG Processing 68/563 atomic regions from SNP 20155 to 20755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,137 DEBUG Processing 345/680 atomic regions from SNP 103427 to 104027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,171 DEBUG Processing 495/721 atomic regions from SNP 148441 to 149041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,211 DEBUG Processing 56/600 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,254 DEBUG Processing 181/664 atomic regions from SNP 54138 to 54738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,302 DEBUG Processing 69/563 atomic regions from SNP 20455 to 21055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,351 DEBUG Processing 346/680 atomic regions from SNP 103727 to 104327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,387 DEBUG Processing 496/721 atomic regions from SNP 148741 to 149341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,419 DEBUG Processing 57/600 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,474 DEBUG Processing 182/664 atomic regions from SNP 54438 to 55038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,494 DEBUG Processing 70/563 atomic regions from SNP 20755 to 21355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,577 DEBUG Processing 347/680 atomic regions from SNP 104027 to 104627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,618 DEBUG Processing 497/721 atomic regions from SNP 149041 to 149641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,632 DEBUG Processing 58/600 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,687 DEBUG Processing 71/563 atomic regions from SNP 21055 to 21655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,693 DEBUG Processing 183/664 atomic regions from SNP 54738 to 55338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,802 DEBUG Processing 348/680 atomic regions from SNP 104327 to 104927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,838 DEBUG Processing 59/600 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,859 DEBUG Processing 498/721 atomic regions from SNP 149341 to 149941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,881 DEBUG Processing 72/563 atomic regions from SNP 21355 to 21955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,914 DEBUG Processing 184/664 atomic regions from SNP 55038 to 55638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,034 DEBUG Processing 349/680 atomic regions from SNP 104627 to 105227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,055 DEBUG Processing 60/600 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,080 DEBUG Processing 499/721 atomic regions from SNP 149641 to 150241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,084 DEBUG Processing 73/563 atomic regions from SNP 21655 to 22255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,143 DEBUG Processing 185/664 atomic regions from SNP 55338 to 55938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,262 DEBUG Processing 350/680 atomic regions from SNP 104927 to 105527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,272 DEBUG Processing 61/600 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,287 DEBUG Processing 74/563 atomic regions from SNP 21955 to 22555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,301 DEBUG Processing 500/721 atomic regions from SNP 149941 to 150541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,365 DEBUG Processing 186/664 atomic regions from SNP 55638 to 56238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,485 DEBUG Processing 62/600 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,492 DEBUG Processing 75/563 atomic regions from SNP 22255 to 22855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,493 DEBUG Processing 351/680 atomic regions from SNP 105227 to 105827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,526 DEBUG Processing 501/721 atomic regions from SNP 150241 to 150841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,588 DEBUG Processing 187/664 atomic regions from SNP 55938 to 56538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,696 DEBUG Processing 76/563 atomic regions from SNP 22555 to 23155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,697 DEBUG Processing 63/600 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,726 DEBUG Processing 352/680 atomic regions from SNP 105527 to 106127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,750 DEBUG Processing 502/721 atomic regions from SNP 150541 to 151141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,815 DEBUG Processing 188/664 atomic regions from SNP 56238 to 56838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,893 DEBUG Processing 77/563 atomic regions from SNP 22855 to 23455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,906 DEBUG Processing 64/600 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,973 DEBUG Processing 503/721 atomic regions from SNP 150841 to 151441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,974 DEBUG Processing 353/680 atomic regions from SNP 105827 to 106427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,043 DEBUG Processing 189/664 atomic regions from SNP 56538 to 57138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,092 DEBUG Processing 78/563 atomic regions from SNP 23155 to 23755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,118 DEBUG Processing 65/600 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,196 DEBUG Processing 504/721 atomic regions from SNP 151141 to 151741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,222 DEBUG Processing 354/680 atomic regions from SNP 106127 to 106727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,272 DEBUG Processing 190/664 atomic regions from SNP 56838 to 57438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,296 DEBUG Processing 79/563 atomic regions from SNP 23455 to 24055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,333 DEBUG Processing 66/600 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,424 DEBUG Processing 505/721 atomic regions from SNP 151441 to 152041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,486 DEBUG Processing 355/680 atomic regions from SNP 106427 to 107027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,499 DEBUG Processing 191/664 atomic regions from SNP 57138 to 57738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,506 DEBUG Processing 80/563 atomic regions from SNP 23755 to 24355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,547 DEBUG Processing 67/600 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,646 DEBUG Processing 506/721 atomic regions from SNP 151741 to 152341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,716 DEBUG Processing 81/563 atomic regions from SNP 24055 to 24655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,729 DEBUG Processing 192/664 atomic regions from SNP 57438 to 58038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,734 DEBUG Processing 356/680 atomic regions from SNP 106727 to 107327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,766 DEBUG Processing 68/600 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,877 DEBUG Processing 507/721 atomic regions from SNP 152041 to 152641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,924 DEBUG Processing 82/563 atomic regions from SNP 24355 to 24955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,961 DEBUG Processing 193/664 atomic regions from SNP 57738 to 58338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,968 DEBUG Processing 357/680 atomic regions from SNP 107027 to 107627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,986 DEBUG Processing 69/600 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,121 DEBUG Processing 508/721 atomic regions from SNP 152341 to 152941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,140 DEBUG Processing 83/563 atomic regions from SNP 24655 to 25255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,192 DEBUG Processing 194/664 atomic regions from SNP 58038 to 58638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,208 DEBUG Processing 358/680 atomic regions from SNP 107327 to 107927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,209 DEBUG Processing 70/600 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,362 DEBUG Processing 509/721 atomic regions from SNP 152641 to 153241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,380 DEBUG Processing 84/563 atomic regions from SNP 24955 to 25555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,428 DEBUG Processing 195/664 atomic regions from SNP 58338 to 58938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,430 DEBUG Processing 71/600 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,469 DEBUG Processing 359/680 atomic regions from SNP 107627 to 108227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,606 DEBUG Processing 510/721 atomic regions from SNP 152941 to 153541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,607 DEBUG Processing 85/563 atomic regions from SNP 25255 to 25855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,643 DEBUG Processing 72/600 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,659 DEBUG Processing 196/664 atomic regions from SNP 58638 to 59238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,720 DEBUG Processing 360/680 atomic regions from SNP 107927 to 108527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,836 DEBUG Processing 86/563 atomic regions from SNP 25555 to 26155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,836 DEBUG Processing 511/721 atomic regions from SNP 153241 to 153841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,851 DEBUG Processing 73/600 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,910 DEBUG Processing 197/664 atomic regions from SNP 58938 to 59538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,964 DEBUG Processing 361/680 atomic regions from SNP 108227 to 108827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,059 DEBUG Processing 74/600 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,068 DEBUG Processing 87/563 atomic regions from SNP 25855 to 26455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,075 DEBUG Processing 512/721 atomic regions from SNP 153541 to 154141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,161 DEBUG Processing 198/664 atomic regions from SNP 59238 to 59838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,194 DEBUG Processing 362/680 atomic regions from SNP 108527 to 109127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,267 DEBUG Processing 75/600 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,289 DEBUG Processing 88/563 atomic regions from SNP 26155 to 26755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,307 DEBUG Processing 513/721 atomic regions from SNP 153841 to 154441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,393 DEBUG Processing 199/664 atomic regions from SNP 59538 to 60138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,423 DEBUG Processing 363/680 atomic regions from SNP 108827 to 109427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,475 DEBUG Processing 76/600 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,519 DEBUG Processing 89/563 atomic regions from SNP 26455 to 27055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,526 DEBUG Processing 514/721 atomic regions from SNP 154141 to 154741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,625 DEBUG Processing 200/664 atomic regions from SNP 59838 to 60438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,654 DEBUG Processing 364/680 atomic regions from SNP 109127 to 109727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,685 DEBUG Processing 77/600 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,742 DEBUG Processing 515/721 atomic regions from SNP 154441 to 155041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,746 DEBUG Processing 90/563 atomic regions from SNP 26755 to 27355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,856 DEBUG Processing 201/664 atomic regions from SNP 60138 to 60738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,887 DEBUG Processing 365/680 atomic regions from SNP 109427 to 110027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,898 DEBUG Processing 78/600 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,965 DEBUG Processing 516/721 atomic regions from SNP 154741 to 155341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,981 DEBUG Processing 91/563 atomic regions from SNP 27055 to 27655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,091 DEBUG Processing 202/664 atomic regions from SNP 60438 to 61038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,117 DEBUG Processing 79/600 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,131 DEBUG Processing 366/680 atomic regions from SNP 109727 to 110327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,193 DEBUG Processing 517/721 atomic regions from SNP 155041 to 155641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,218 DEBUG Processing 92/563 atomic regions from SNP 27355 to 27955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,322 DEBUG Processing 203/664 atomic regions from SNP 60738 to 61338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,333 DEBUG Processing 80/600 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,361 DEBUG Processing 367/680 atomic regions from SNP 110027 to 110627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,422 DEBUG Processing 518/721 atomic regions from SNP 155341 to 155941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,439 DEBUG Processing 93/563 atomic regions from SNP 27655 to 28255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,546 DEBUG Processing 81/600 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,557 DEBUG Processing 204/664 atomic regions from SNP 61038 to 61638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,592 DEBUG Processing 368/680 atomic regions from SNP 110327 to 110927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,646 DEBUG Processing 519/721 atomic regions from SNP 155641 to 156241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,658 DEBUG Processing 94/563 atomic regions from SNP 27955 to 28555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,757 DEBUG Processing 82/600 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,787 DEBUG Processing 205/664 atomic regions from SNP 61338 to 61938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,817 DEBUG Processing 369/680 atomic regions from SNP 110627 to 111227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,872 DEBUG Processing 520/721 atomic regions from SNP 155941 to 156541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,884 DEBUG Processing 95/563 atomic regions from SNP 28255 to 28855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,968 DEBUG Processing 83/600 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,018 DEBUG Processing 206/664 atomic regions from SNP 61638 to 62238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,042 DEBUG Processing 370/680 atomic regions from SNP 110927 to 111527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,089 DEBUG Processing 96/563 atomic regions from SNP 28555 to 29155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,098 DEBUG Processing 521/721 atomic regions from SNP 156241 to 156841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,181 DEBUG Processing 84/600 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,250 DEBUG Processing 207/664 atomic regions from SNP 61938 to 62538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,267 DEBUG Processing 371/680 atomic regions from SNP 111227 to 111827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,294 DEBUG Processing 97/563 atomic regions from SNP 28855 to 29455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,320 DEBUG Processing 522/721 atomic regions from SNP 156541 to 157141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,388 DEBUG Processing 85/600 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,478 DEBUG Processing 208/664 atomic regions from SNP 62238 to 62838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,495 DEBUG Processing 372/680 atomic regions from SNP 111527 to 112127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,501 DEBUG Processing 98/563 atomic regions from SNP 29155 to 29755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,537 DEBUG Processing 523/721 atomic regions from SNP 156841 to 157441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,589 DEBUG Processing 86/600 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,708 DEBUG Processing 99/563 atomic regions from SNP 29455 to 30055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,709 DEBUG Processing 209/664 atomic regions from SNP 62538 to 63138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,724 DEBUG Processing 373/680 atomic regions from SNP 111827 to 112427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,756 DEBUG Processing 524/721 atomic regions from SNP 157141 to 157741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,791 DEBUG Processing 87/600 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,914 DEBUG Processing 100/563 atomic regions from SNP 29755 to 30355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,939 DEBUG Processing 210/664 atomic regions from SNP 62838 to 63438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:47,957 DEBUG Processing 374/680 atomic regions from SNP 112127 to 112727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,979 DEBUG Processing 525/721 atomic regions from SNP 157441 to 158041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,998 DEBUG Processing 88/600 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,121 DEBUG Processing 101/563 atomic regions from SNP 30055 to 30655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,175 DEBUG Processing 211/664 atomic regions from SNP 63138 to 63738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,194 DEBUG Processing 375/680 atomic regions from SNP 112427 to 113027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,198 DEBUG Processing 526/721 atomic regions from SNP 157741 to 158341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,213 DEBUG Processing 89/600 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,326 DEBUG Processing 102/563 atomic regions from SNP 30355 to 30955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,419 DEBUG Processing 212/664 atomic regions from SNP 63438 to 64038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,424 DEBUG Processing 527/721 atomic regions from SNP 158041 to 158641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,437 DEBUG Processing 376/680 atomic regions from SNP 112727 to 113327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,440 DEBUG Processing 90/600 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,540 DEBUG Processing 103/563 atomic regions from SNP 30655 to 31255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,641 DEBUG Processing 528/721 atomic regions from SNP 158341 to 158941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,652 DEBUG Processing 213/664 atomic regions from SNP 63738 to 64338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,657 DEBUG Processing 91/600 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,669 DEBUG Processing 377/680 atomic regions from SNP 113027 to 113627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,764 DEBUG Processing 104/563 atomic regions from SNP 30955 to 31555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,862 DEBUG Processing 529/721 atomic regions from SNP 158641 to 159241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,877 DEBUG Processing 92/600 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,884 DEBUG Processing 214/664 atomic regions from SNP 64038 to 64638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:48,901 DEBUG Processing 378/680 atomic regions from SNP 113327 to 113927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,997 DEBUG Processing 105/563 atomic regions from SNP 31255 to 31855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,090 DEBUG Processing 530/721 atomic regions from SNP 158941 to 159541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,097 DEBUG Processing 93/600 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,116 DEBUG Processing 215/664 atomic regions from SNP 64338 to 64938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,136 DEBUG Processing 379/680 atomic regions from SNP 113627 to 114227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,202 DEBUG Processing 106/563 atomic regions from SNP 31555 to 32155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,312 DEBUG Processing 94/600 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,321 DEBUG Processing 531/721 atomic regions from SNP 159241 to 159841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,347 DEBUG Processing 216/664 atomic regions from SNP 64638 to 65238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,374 DEBUG Processing 380/680 atomic regions from SNP 113927 to 114527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,404 DEBUG Processing 107/563 atomic regions from SNP 31855 to 32455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,520 DEBUG Processing 95/600 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,549 DEBUG Processing 532/721 atomic regions from SNP 159541 to 160141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,575 DEBUG Processing 217/664 atomic regions from SNP 64938 to 65538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,625 DEBUG Processing 108/563 atomic regions from SNP 32155 to 32755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,631 DEBUG Processing 381/680 atomic regions from SNP 114227 to 114827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,727 DEBUG Processing 96/600 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,775 DEBUG Processing 533/721 atomic regions from SNP 159841 to 160441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,800 DEBUG Processing 218/664 atomic regions from SNP 65238 to 65838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:49,857 DEBUG Processing 109/563 atomic regions from SNP 32455 to 33055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,884 DEBUG Processing 382/680 atomic regions from SNP 114527 to 115127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,936 DEBUG Processing 97/600 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,993 DEBUG Processing 534/721 atomic regions from SNP 160141 to 160741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,020 DEBUG Processing 219/664 atomic regions from SNP 65538 to 66138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,077 DEBUG Processing 110/563 atomic regions from SNP 32755 to 33355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,127 DEBUG Processing 383/680 atomic regions from SNP 114827 to 115427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,157 DEBUG Processing 98/600 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,214 DEBUG Processing 535/721 atomic regions from SNP 160441 to 161041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,237 DEBUG Processing 220/664 atomic regions from SNP 65838 to 66438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,286 DEBUG Processing 111/563 atomic regions from SNP 33055 to 33655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,363 DEBUG Processing 384/680 atomic regions from SNP 115127 to 115727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,378 DEBUG Processing 99/600 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,436 DEBUG Processing 536/721 atomic regions from SNP 160741 to 161341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,458 DEBUG Processing 221/664 atomic regions from SNP 66138 to 66738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,487 DEBUG Processing 112/563 atomic regions from SNP 33355 to 33955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,597 DEBUG Processing 385/680 atomic regions from SNP 115427 to 116027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,599 DEBUG Processing 100/600 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,654 DEBUG Processing 537/721 atomic regions from SNP 161041 to 161641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,686 DEBUG Processing 222/664 atomic regions from SNP 66438 to 67038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:50,709 DEBUG Processing 113/563 atomic regions from SNP 33655 to 34255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,816 DEBUG Processing 101/600 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,829 DEBUG Processing 386/680 atomic regions from SNP 115727 to 116327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,875 DEBUG Processing 538/721 atomic regions from SNP 161341 to 161941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,912 DEBUG Processing 114/563 atomic regions from SNP 33955 to 34555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,913 DEBUG Processing 223/664 atomic regions from SNP 66738 to 67338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,030 DEBUG Processing 102/600 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,061 DEBUG Processing 387/680 atomic regions from SNP 116027 to 116627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,096 DEBUG Processing 539/721 atomic regions from SNP 161641 to 162241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,123 DEBUG Processing 115/563 atomic regions from SNP 34255 to 34855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,144 DEBUG Processing 224/664 atomic regions from SNP 67038 to 67638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,244 DEBUG Processing 103/600 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,292 DEBUG Processing 388/680 atomic regions from SNP 116327 to 116927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,315 DEBUG Processing 540/721 atomic regions from SNP 161941 to 162541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,341 DEBUG Processing 116/563 atomic regions from SNP 34555 to 35155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,381 DEBUG Processing 225/664 atomic regions from SNP 67338 to 67938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,456 DEBUG Processing 104/600 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,521 DEBUG Processing 389/680 atomic regions from SNP 116627 to 117227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,538 DEBUG Processing 541/721 atomic regions from SNP 162241 to 162841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,548 DEBUG Processing 117/563 atomic regions from SNP 34855 to 35455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,617 DEBUG Processing 226/664 atomic regions from SNP 67638 to 68238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,667 DEBUG Processing 105/600 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,745 DEBUG Processing 390/680 atomic regions from SNP 116927 to 117527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,754 DEBUG Processing 118/563 atomic regions from SNP 35155 to 35755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,758 DEBUG Processing 542/721 atomic regions from SNP 162541 to 163141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,852 DEBUG Processing 227/664 atomic regions from SNP 67938 to 68538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:51,893 DEBUG Processing 106/600 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,955 DEBUG Processing 119/563 atomic regions from SNP 35455 to 36055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,975 DEBUG Processing 391/680 atomic regions from SNP 117227 to 117827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,977 DEBUG Processing 543/721 atomic regions from SNP 162841 to 163441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,082 DEBUG Processing 228/664 atomic regions from SNP 68238 to 68838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,106 DEBUG Processing 107/600 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,152 DEBUG Processing 120/563 atomic regions from SNP 35755 to 36355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,186 DEBUG Processing 544/721 atomic regions from SNP 163141 to 163741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,205 DEBUG Processing 392/680 atomic regions from SNP 117527 to 118127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,310 DEBUG Processing 229/664 atomic regions from SNP 68538 to 69138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,319 DEBUG Processing 108/600 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,342 DEBUG Processing 121/563 atomic regions from SNP 36055 to 36655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,397 DEBUG Processing 545/721 atomic regions from SNP 163441 to 164041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,435 DEBUG Processing 393/680 atomic regions from SNP 117827 to 118427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,530 DEBUG Processing 109/600 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,533 DEBUG Processing 122/563 atomic regions from SNP 36355 to 36955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,538 DEBUG Processing 230/664 atomic regions from SNP 68838 to 69438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,606 DEBUG Processing 546/721 atomic regions from SNP 163741 to 164341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,662 DEBUG Processing 394/680 atomic regions from SNP 118127 to 118727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,729 DEBUG Processing 123/563 atomic regions from SNP 36655 to 37255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,744 DEBUG Processing 110/600 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,767 DEBUG Processing 231/664 atomic regions from SNP 69138 to 69738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:52,827 DEBUG Processing 547/721 atomic regions from SNP 164041 to 164641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,891 DEBUG Processing 395/680 atomic regions from SNP 118427 to 119027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,925 DEBUG Processing 124/563 atomic regions from SNP 36955 to 37555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,956 DEBUG Processing 111/600 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,996 DEBUG Processing 232/664 atomic regions from SNP 69438 to 70038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,045 DEBUG Processing 548/721 atomic regions from SNP 164341 to 164941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,120 DEBUG Processing 396/680 atomic regions from SNP 118727 to 119327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,123 DEBUG Processing 125/563 atomic regions from SNP 37255 to 37855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,169 DEBUG Processing 112/600 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,222 DEBUG Processing 233/664 atomic regions from SNP 69738 to 70338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,291 DEBUG Processing 549/721 atomic regions from SNP 164641 to 165241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,333 DEBUG Processing 126/563 atomic regions from SNP 37555 to 38155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,358 DEBUG Processing 397/680 atomic regions from SNP 119027 to 119627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,393 DEBUG Processing 113/600 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,450 DEBUG Processing 234/664 atomic regions from SNP 70038 to 70638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,513 DEBUG Processing 550/721 atomic regions from SNP 164941 to 165541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,526 DEBUG Processing 127/563 atomic regions from SNP 37855 to 38455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,594 DEBUG Processing 398/680 atomic regions from SNP 119327 to 119927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,605 DEBUG Processing 114/600 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,670 DEBUG Processing 235/664 atomic regions from SNP 70338 to 70938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,720 DEBUG Processing 128/563 atomic regions from SNP 38155 to 38755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,737 DEBUG Processing 551/721 atomic regions from SNP 165241 to 165841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,823 DEBUG Processing 115/600 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,828 DEBUG Processing 399/680 atomic regions from SNP 119627 to 120227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,901 DEBUG Processing 236/664 atomic regions from SNP 70638 to 71238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:53,916 DEBUG Processing 129/563 atomic regions from SNP 38455 to 39055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,961 DEBUG Processing 552/721 atomic regions from SNP 165541 to 166141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,046 DEBUG Processing 116/600 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,061 DEBUG Processing 400/680 atomic regions from SNP 119927 to 120527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,110 DEBUG Processing 130/563 atomic regions from SNP 38755 to 39355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,141 DEBUG Processing 237/664 atomic regions from SNP 70938 to 71538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,185 DEBUG Processing 553/721 atomic regions from SNP 165841 to 166441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,262 DEBUG Processing 117/600 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,291 DEBUG Processing 401/680 atomic regions from SNP 120227 to 120827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,303 DEBUG Processing 131/563 atomic regions from SNP 39055 to 39655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,372 DEBUG Processing 238/664 atomic regions from SNP 71238 to 71838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,424 DEBUG Processing 554/721 atomic regions from SNP 166141 to 166741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,468 DEBUG Processing 118/600 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,497 DEBUG Processing 132/563 atomic regions from SNP 39355 to 39955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,521 DEBUG Processing 402/680 atomic regions from SNP 120527 to 121127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,606 DEBUG Processing 239/664 atomic regions from SNP 71538 to 72138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,662 DEBUG Processing 555/721 atomic regions from SNP 166441 to 167041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,679 DEBUG Processing 119/600 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,713 DEBUG Processing 133/563 atomic regions from SNP 39655 to 40255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,771 DEBUG Processing 403/680 atomic regions from SNP 120827 to 121427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,849 DEBUG Processing 240/664 atomic regions from SNP 71838 to 72438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:54,896 DEBUG Processing 120/600 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,910 DEBUG Processing 556/721 atomic regions from SNP 166741 to 167341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,922 DEBUG Processing 134/563 atomic regions from SNP 39955 to 40555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,964 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:54:55,022 DEBUG Processing 404/680 atomic regions from SNP 121127 to 121727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,080 DEBUG Processing 241/664 atomic regions from SNP 72138 to 72738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,101 DEBUG Processing 121/600 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,118 DEBUG Processing 135/563 atomic regions from SNP 40255 to 40855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,130 DEBUG Processing 557/721 atomic regions from SNP 167041 to 167641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,270 DEBUG Processing 405/680 atomic regions from SNP 121427 to 122027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,307 DEBUG Processing 242/664 atomic regions from SNP 72438 to 73038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,313 DEBUG Processing 122/600 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,321 DEBUG Processing 136/563 atomic regions from SNP 40555 to 41155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,373 DEBUG Processing 558/721 atomic regions from SNP 167341 to 167941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,516 DEBUG Processing 137/563 atomic regions from SNP 40855 to 41455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,520 DEBUG Processing 406/680 atomic regions from SNP 121727 to 122327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,523 DEBUG Processing 123/600 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,536 DEBUG Processing 243/664 atomic regions from SNP 72738 to 73338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,610 DEBUG Processing 559/721 atomic regions from SNP 167641 to 168241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,708 DEBUG Processing 138/563 atomic regions from SNP 41155 to 41755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,729 DEBUG Processing 124/600 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,762 DEBUG Processing 244/664 atomic regions from SNP 73038 to 73638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:55,768 DEBUG Processing 407/680 atomic regions from SNP 122027 to 122627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,838 DEBUG Processing 560/721 atomic regions from SNP 167941 to 168541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,899 DEBUG Processing 139/563 atomic regions from SNP 41455 to 42055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,938 DEBUG Processing 125/600 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,996 DEBUG Processing 245/664 atomic regions from SNP 73338 to 73938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,027 DEBUG Processing 408/680 atomic regions from SNP 122327 to 122927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,067 DEBUG Processing 561/721 atomic regions from SNP 168241 to 168841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,087 DEBUG Processing 140/563 atomic regions from SNP 41755 to 42355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,139 DEBUG Processing 126/600 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,220 DEBUG Processing 246/664 atomic regions from SNP 73638 to 74238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,275 DEBUG Processing 409/680 atomic regions from SNP 122627 to 123227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,281 DEBUG Processing 562/721 atomic regions from SNP 168541 to 169141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,285 DEBUG Processing 141/563 atomic regions from SNP 42055 to 42655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,344 DEBUG Processing 127/600 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,438 DEBUG Processing 247/664 atomic regions from SNP 73938 to 74538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,484 DEBUG Processing 142/563 atomic regions from SNP 42355 to 42955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,494 DEBUG Processing 563/721 atomic regions from SNP 168841 to 169441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,508 DEBUG Processing 410/680 atomic regions from SNP 122927 to 123527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,553 DEBUG Processing 128/600 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,659 DEBUG Processing 248/664 atomic regions from SNP 74238 to 74838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,680 DEBUG Processing 143/563 atomic regions from SNP 42655 to 43255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,710 DEBUG Processing 564/721 atomic regions from SNP 169141 to 169741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,738 DEBUG Processing 411/680 atomic regions from SNP 123227 to 123827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,766 DEBUG Processing 129/600 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,881 DEBUG Processing 144/563 atomic regions from SNP 42955 to 43555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,885 DEBUG Processing 249/664 atomic regions from SNP 74538 to 75138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:56,938 DEBUG Processing 565/721 atomic regions from SNP 169441 to 170041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,962 DEBUG Processing 412/680 atomic regions from SNP 123527 to 124127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,975 DEBUG Processing 130/600 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,082 DEBUG Processing 145/563 atomic regions from SNP 43255 to 43855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,108 DEBUG Processing 250/664 atomic regions from SNP 74838 to 75438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,183 DEBUG Processing 566/721 atomic regions from SNP 169741 to 170341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,188 DEBUG Processing 131/600 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,190 DEBUG Processing 413/680 atomic regions from SNP 123827 to 124427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,278 DEBUG Processing 146/563 atomic regions from SNP 43555 to 44155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,329 DEBUG Processing 251/664 atomic regions from SNP 75138 to 75738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,394 DEBUG Processing 132/600 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,413 DEBUG Processing 414/680 atomic regions from SNP 124127 to 124727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,423 DEBUG Processing 567/721 atomic regions from SNP 170041 to 170641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,476 DEBUG Processing 147/563 atomic regions from SNP 43855 to 44455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,550 DEBUG Processing 252/664 atomic regions from SNP 75438 to 76038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,604 DEBUG Processing 133/600 atomic regions from SNP 39732 to 40333 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,639 DEBUG Processing 415/680 atomic regions from SNP 124427 to 125027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,671 DEBUG Processing 568/721 atomic regions from SNP 170341 to 170941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,678 DEBUG Processing 148/563 atomic regions from SNP 44155 to 44755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,768 DEBUG Processing 253/664 atomic regions from SNP 75738 to 76338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:57,809 DEBUG Processing 134/600 atomic regions from SNP 40033 to 40634 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,862 DEBUG Processing 416/680 atomic regions from SNP 124727 to 125327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,878 DEBUG Processing 149/563 atomic regions from SNP 44455 to 45055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,913 DEBUG Processing 569/721 atomic regions from SNP 170641 to 171241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,993 DEBUG Processing 254/664 atomic regions from SNP 76038 to 76638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,029 DEBUG Processing 135/600 atomic regions from SNP 40334 to 40935 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,084 DEBUG Processing 417/680 atomic regions from SNP 125027 to 125627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,095 DEBUG Processing 150/563 atomic regions from SNP 44755 to 45355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,164 DEBUG Processing 570/721 atomic regions from SNP 170941 to 171541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,211 DEBUG Processing 255/664 atomic regions from SNP 76338 to 76938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,231 DEBUG Processing 136/600 atomic regions from SNP 40635 to 41236 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,301 DEBUG Processing 151/563 atomic regions from SNP 45055 to 45655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,312 DEBUG Processing 418/680 atomic regions from SNP 125327 to 125927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,416 DEBUG Processing 571/721 atomic regions from SNP 171241 to 171841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,435 DEBUG Processing 256/664 atomic regions from SNP 76638 to 77238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,443 DEBUG Processing 137/600 atomic regions from SNP 40936 to 41537 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,499 DEBUG Processing 152/563 atomic regions from SNP 45355 to 45955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,535 DEBUG Processing 419/680 atomic regions from SNP 125627 to 126227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,647 DEBUG Processing 138/600 atomic regions from SNP 41237 to 41838 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,655 DEBUG Processing 257/664 atomic regions from SNP 76938 to 77538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,663 DEBUG Processing 572/721 atomic regions from SNP 171541 to 172141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,694 DEBUG Processing 153/563 atomic regions from SNP 45655 to 46255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,753 DEBUG Processing 420/680 atomic regions from SNP 125927 to 126527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,852 DEBUG Processing 139/600 atomic regions from SNP 41538 to 42139 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,872 DEBUG Processing 258/664 atomic regions from SNP 77238 to 77838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:58,889 DEBUG Processing 154/563 atomic regions from SNP 45955 to 46555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,903 DEBUG Processing 573/721 atomic regions from SNP 171841 to 172441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,969 DEBUG Processing 421/680 atomic regions from SNP 126227 to 126827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,068 DEBUG Processing 140/600 atomic regions from SNP 41839 to 42440 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,092 DEBUG Processing 155/563 atomic regions from SNP 46255 to 46855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,102 DEBUG Processing 259/664 atomic regions from SNP 77538 to 78138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,135 DEBUG Processing 574/721 atomic regions from SNP 172141 to 172741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,181 DEBUG Processing 422/680 atomic regions from SNP 126527 to 127127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,275 DEBUG Processing 141/600 atomic regions from SNP 42140 to 42741 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,300 DEBUG Processing 156/563 atomic regions from SNP 46555 to 47155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,325 DEBUG Processing 260/664 atomic regions from SNP 77838 to 78438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,373 DEBUG Processing 575/721 atomic regions from SNP 172441 to 173041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,396 DEBUG Processing 423/680 atomic regions from SNP 126827 to 127427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,492 DEBUG Processing 142/600 atomic regions from SNP 42441 to 43042 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,503 DEBUG Processing 157/563 atomic regions from SNP 46855 to 47455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,558 DEBUG Processing 261/664 atomic regions from SNP 78138 to 78738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,610 DEBUG Processing 576/721 atomic regions from SNP 172741 to 173341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,617 DEBUG Processing 424/680 atomic regions from SNP 127127 to 127727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,700 DEBUG Processing 158/563 atomic regions from SNP 47155 to 47755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,713 DEBUG Processing 143/600 atomic regions from SNP 42742 to 43343 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,797 DEBUG Processing 262/664 atomic regions from SNP 78438 to 79038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:59,837 DEBUG Processing 425/680 atomic regions from SNP 127427 to 128027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,850 DEBUG Processing 577/721 atomic regions from SNP 173041 to 173641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,896 DEBUG Processing 159/563 atomic regions from SNP 47455 to 48055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,921 DEBUG Processing 144/600 atomic regions from SNP 43043 to 43644 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,051 DEBUG Processing 263/664 atomic regions from SNP 78738 to 79338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,063 DEBUG Processing 426/680 atomic regions from SNP 127727 to 128327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,103 DEBUG Processing 160/563 atomic regions from SNP 47755 to 48355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,103 DEBUG Processing 578/721 atomic regions from SNP 173341 to 173941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,125 DEBUG Processing 145/600 atomic regions from SNP 43344 to 43945 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,274 DEBUG Processing 264/664 atomic regions from SNP 79038 to 79638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,290 DEBUG Processing 427/680 atomic regions from SNP 128027 to 128627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,305 DEBUG Processing 161/563 atomic regions from SNP 48055 to 48655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,334 DEBUG Processing 146/600 atomic regions from SNP 43645 to 44246 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,353 DEBUG Processing 579/721 atomic regions from SNP 173641 to 174241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,503 DEBUG Processing 265/664 atomic regions from SNP 79338 to 79938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,512 DEBUG Processing 162/563 atomic regions from SNP 48355 to 48955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,521 DEBUG Processing 428/680 atomic regions from SNP 128327 to 128927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,546 DEBUG Processing 147/600 atomic regions from SNP 43946 to 44547 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,586 DEBUG Processing 580/721 atomic regions from SNP 173941 to 174541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,712 DEBUG Processing 163/563 atomic regions from SNP 48655 to 49255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,728 DEBUG Processing 266/664 atomic regions from SNP 79638 to 80238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,749 DEBUG Processing 429/680 atomic regions from SNP 128627 to 129227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,759 DEBUG Processing 148/600 atomic regions from SNP 44247 to 44848 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,803 DEBUG Processing 581/721 atomic regions from SNP 174241 to 174841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,899 DEBUG Processing 164/563 atomic regions from SNP 48955 to 49555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,959 DEBUG Processing 267/664 atomic regions from SNP 79938 to 80538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:00,967 DEBUG Processing 149/600 atomic regions from SNP 44548 to 45149 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,973 DEBUG Processing 430/680 atomic regions from SNP 128927 to 129527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,013 DEBUG Processing 582/721 atomic regions from SNP 174541 to 175141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,103 DEBUG Processing 165/563 atomic regions from SNP 49255 to 49855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,175 DEBUG Processing 150/600 atomic regions from SNP 44849 to 45450 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,182 DEBUG Processing 268/664 atomic regions from SNP 80238 to 80838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,198 DEBUG Processing 431/680 atomic regions from SNP 129227 to 129827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,224 DEBUG Processing 583/721 atomic regions from SNP 174841 to 175441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,291 DEBUG Processing 166/563 atomic regions from SNP 49555 to 50155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,378 DEBUG Processing 151/600 atomic regions from SNP 45150 to 45751 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,406 DEBUG Processing 269/664 atomic regions from SNP 80538 to 81138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,433 DEBUG Processing 584/721 atomic regions from SNP 175141 to 175741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,434 DEBUG Processing 432/680 atomic regions from SNP 129527 to 130127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,487 DEBUG Processing 167/563 atomic regions from SNP 49855 to 50455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,584 DEBUG Processing 152/600 atomic regions from SNP 45451 to 46052 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,627 DEBUG Processing 270/664 atomic regions from SNP 80838 to 81438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,646 DEBUG Processing 585/721 atomic regions from SNP 175441 to 176041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,678 DEBUG Processing 433/680 atomic regions from SNP 129827 to 130427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,689 DEBUG Processing 168/563 atomic regions from SNP 50155 to 50755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,788 DEBUG Processing 153/600 atomic regions from SNP 45752 to 46353 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,846 DEBUG Processing 271/664 atomic regions from SNP 81138 to 81738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:01,854 DEBUG Processing 586/721 atomic regions from SNP 175741 to 176341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,885 DEBUG Processing 169/563 atomic regions from SNP 50455 to 51055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:01,899 DEBUG Processing 434/680 atomic regions from SNP 130127 to 130727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,003 DEBUG Processing 154/600 atomic regions from SNP 46053 to 46654 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,062 DEBUG Processing 272/664 atomic regions from SNP 81438 to 82038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,084 DEBUG Processing 170/563 atomic regions from SNP 50755 to 51355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,101 DEBUG Processing 587/721 atomic regions from SNP 176041 to 176641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,119 DEBUG Processing 435/680 atomic regions from SNP 130427 to 131027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,208 DEBUG Processing 155/600 atomic regions from SNP 46354 to 46955 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,284 DEBUG Processing 273/664 atomic regions from SNP 81738 to 82338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,285 DEBUG Processing 171/563 atomic regions from SNP 51055 to 51655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,338 DEBUG Processing 588/721 atomic regions from SNP 176341 to 176941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,339 DEBUG Processing 436/680 atomic regions from SNP 130727 to 131327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,411 DEBUG Processing 156/600 atomic regions from SNP 46655 to 47256 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,475 DEBUG Processing 172/563 atomic regions from SNP 51355 to 51955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,501 DEBUG Processing 274/664 atomic regions from SNP 82038 to 82638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,560 DEBUG Processing 437/680 atomic regions from SNP 131027 to 131627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,564 DEBUG Processing 589/721 atomic regions from SNP 176641 to 177241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,611 DEBUG Processing 157/600 atomic regions from SNP 46956 to 47557 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,659 DEBUG Processing 173/563 atomic regions from SNP 51655 to 52255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,717 DEBUG Processing 275/664 atomic regions from SNP 82338 to 82938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:02,785 DEBUG Processing 438/680 atomic regions from SNP 131327 to 131927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,796 DEBUG Processing 590/721 atomic regions from SNP 176941 to 177541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,813 DEBUG Processing 158/600 atomic regions from SNP 47257 to 47858 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,855 DEBUG Processing 174/563 atomic regions from SNP 51955 to 52555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:02,930 DEBUG Processing 276/664 atomic regions from SNP 82638 to 83238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,009 DEBUG Processing 439/680 atomic regions from SNP 131627 to 132227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,014 DEBUG Processing 159/600 atomic regions from SNP 47558 to 48159 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,018 DEBUG Processing 591/721 atomic regions from SNP 177241 to 177841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,048 DEBUG Processing 175/563 atomic regions from SNP 52255 to 52855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,161 DEBUG Processing 277/664 atomic regions from SNP 82938 to 83538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,223 DEBUG Processing 160/600 atomic regions from SNP 47859 to 48460 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,232 DEBUG Processing 440/680 atomic regions from SNP 131927 to 132527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,241 DEBUG Processing 176/563 atomic regions from SNP 52555 to 53155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,252 DEBUG Processing 592/721 atomic regions from SNP 177541 to 178141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,380 DEBUG Processing 278/664 atomic regions from SNP 83238 to 83838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,435 DEBUG Processing 161/600 atomic regions from SNP 48160 to 48761 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,455 DEBUG Processing 177/563 atomic regions from SNP 52855 to 53455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,462 DEBUG Processing 441/680 atomic regions from SNP 132227 to 132827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,492 DEBUG Processing 593/721 atomic regions from SNP 177841 to 178441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,599 DEBUG Processing 279/664 atomic regions from SNP 83538 to 84138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,642 DEBUG Processing 162/600 atomic regions from SNP 48461 to 49062 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,676 DEBUG Processing 178/563 atomic regions from SNP 53155 to 53755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,687 DEBUG Processing 442/680 atomic regions from SNP 132527 to 133127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,726 DEBUG Processing 594/721 atomic regions from SNP 178141 to 178741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,833 DEBUG Processing 280/664 atomic regions from SNP 83838 to 84438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:03,848 DEBUG Processing 163/600 atomic regions from SNP 48762 to 49363 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,882 DEBUG Processing 179/563 atomic regions from SNP 53455 to 54055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:03,912 DEBUG Processing 443/680 atomic regions from SNP 132827 to 133427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,954 DEBUG Processing 595/721 atomic regions from SNP 178441 to 179041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,052 DEBUG Processing 164/600 atomic regions from SNP 49063 to 49664 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,068 DEBUG Processing 281/664 atomic regions from SNP 84138 to 84738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,085 DEBUG Processing 180/563 atomic regions from SNP 53755 to 54355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,134 DEBUG Processing 444/680 atomic regions from SNP 133127 to 133727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,179 DEBUG Processing 596/721 atomic regions from SNP 178741 to 179341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,261 DEBUG Processing 165/600 atomic regions from SNP 49364 to 49965 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,294 DEBUG Processing 181/563 atomic regions from SNP 54055 to 54655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,295 DEBUG Processing 282/664 atomic regions from SNP 84438 to 85038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,353 DEBUG Processing 445/680 atomic regions from SNP 133427 to 134027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,383 DEBUG Processing 597/721 atomic regions from SNP 179041 to 179641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,482 DEBUG Processing 166/600 atomic regions from SNP 49665 to 50266 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,487 DEBUG Processing 182/563 atomic regions from SNP 54355 to 54955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,531 DEBUG Processing 283/664 atomic regions from SNP 84738 to 85338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,579 DEBUG Processing 446/680 atomic regions from SNP 133727 to 134327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,615 DEBUG Processing 598/721 atomic regions from SNP 179341 to 179941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,681 DEBUG Processing 183/563 atomic regions from SNP 54655 to 55255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,705 DEBUG Processing 167/600 atomic regions from SNP 49966 to 50567 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,770 DEBUG Processing 284/664 atomic regions from SNP 85038 to 85638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,804 DEBUG Processing 447/680 atomic regions from SNP 134027 to 134627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,861 DEBUG Processing 599/721 atomic regions from SNP 179641 to 180241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,878 DEBUG Processing 184/563 atomic regions from SNP 54955 to 55555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:04,915 DEBUG Processing 168/600 atomic regions from SNP 50267 to 50868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,991 DEBUG Processing 285/664 atomic regions from SNP 85338 to 85938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,053 DEBUG Processing 448/680 atomic regions from SNP 134327 to 134927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,076 DEBUG Processing 185/563 atomic regions from SNP 55255 to 55855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,106 DEBUG Processing 600/721 atomic regions from SNP 179941 to 180541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,123 DEBUG Processing 169/600 atomic regions from SNP 50568 to 51169 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,213 DEBUG Processing 286/664 atomic regions from SNP 85638 to 86238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,272 DEBUG Processing 186/563 atomic regions from SNP 55555 to 56155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,284 DEBUG Processing 449/680 atomic regions from SNP 134627 to 135227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,335 DEBUG Processing 170/600 atomic regions from SNP 50869 to 51470 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,350 DEBUG Processing 601/721 atomic regions from SNP 180241 to 180841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,370 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:55:05,372 DEBUG chr17: Signal quantile: 0.992. signal threshold: 14. Best RMSEA: 0.015 2025-01-31 09:55:05,428 DEBUG Processing 287/664 atomic regions from SNP 85938 to 86538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,461 DEBUG Processing 187/563 atomic regions from SNP 55855 to 56455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,503 DEBUG Processing 450/680 atomic regions from SNP 134927 to 135527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,549 DEBUG Processing 171/600 atomic regions from SNP 51170 to 51771 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,572 DEBUG Processing 602/721 atomic regions from SNP 180541 to 181141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,648 DEBUG Processing 188/563 atomic regions from SNP 56155 to 56755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,650 DEBUG Processing 288/664 atomic regions from SNP 86238 to 86838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,724 DEBUG Processing 451/680 atomic regions from SNP 135227 to 135827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,761 DEBUG Processing 172/600 atomic regions from SNP 51471 to 52072 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,790 DEBUG Processing 603/721 atomic regions from SNP 180841 to 181441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,844 DEBUG Processing 189/563 atomic regions from SNP 56455 to 57055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:05,875 DEBUG Processing 289/664 atomic regions from SNP 86538 to 87138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,948 DEBUG Processing 452/680 atomic regions from SNP 135527 to 136127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,964 DEBUG Processing 173/600 atomic regions from SNP 51772 to 52373 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,027 DEBUG Processing 604/721 atomic regions from SNP 181141 to 181741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,044 DEBUG Processing 190/563 atomic regions from SNP 56755 to 57355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,112 DEBUG Processing 290/664 atomic regions from SNP 86838 to 87438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,172 DEBUG Processing 174/600 atomic regions from SNP 52073 to 52674 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,202 DEBUG Processing 453/680 atomic regions from SNP 135827 to 136427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,245 DEBUG Processing 191/563 atomic regions from SNP 57055 to 57655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,276 DEBUG Processing 605/721 atomic regions from SNP 181441 to 182041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,335 DEBUG Processing 291/664 atomic regions from SNP 87138 to 87738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,379 DEBUG Processing 175/600 atomic regions from SNP 52374 to 52975 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,429 DEBUG Processing 454/680 atomic regions from SNP 136127 to 136727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,441 DEBUG Processing 192/563 atomic regions from SNP 57355 to 57955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,513 DEBUG Processing 606/721 atomic regions from SNP 181741 to 182341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,564 DEBUG Processing 292/664 atomic regions from SNP 87438 to 88038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,593 DEBUG Processing 176/600 atomic regions from SNP 52675 to 53276 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,642 DEBUG Processing 193/563 atomic regions from SNP 57655 to 58255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,654 DEBUG Processing 455/680 atomic regions from SNP 136427 to 137027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,740 DEBUG Processing 607/721 atomic regions from SNP 182041 to 182641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,794 DEBUG Processing 293/664 atomic regions from SNP 87738 to 88338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,813 DEBUG Processing 177/600 atomic regions from SNP 52976 to 53577 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,841 DEBUG Processing 194/563 atomic regions from SNP 57955 to 58555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:06,883 DEBUG Processing 456/680 atomic regions from SNP 136727 to 137327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,956 DEBUG Processing 608/721 atomic regions from SNP 182341 to 182941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,023 DEBUG Processing 294/664 atomic regions from SNP 88038 to 88638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,026 DEBUG Processing 178/600 atomic regions from SNP 53277 to 53878 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,038 DEBUG Processing 195/563 atomic regions from SNP 58255 to 58855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,096 DEBUG chr17 total SNP count: 160768 2025-01-31 09:55:07,096 DEBUG chr17 length: 94987271 2025-01-31 09:55:07,096 DEBUG ----------------------------------------- 2025-01-31 09:55:07,096 INFO Processing SNPs in chr17 2025-01-31 09:55:07,117 DEBUG Processing 457/680 atomic regions from SNP 137027 to 137627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,176 DEBUG Processing 609/721 atomic regions from SNP 182641 to 183241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,237 DEBUG Processing 179/600 atomic regions from SNP 53578 to 54179 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,239 DEBUG Processing 196/563 atomic regions from SNP 58555 to 59155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,250 DEBUG Processing 295/664 atomic regions from SNP 88338 to 88938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,253 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 160768)] 2025-01-31 09:55:07,348 DEBUG Processing 458/680 atomic regions from SNP 137327 to 137927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,361 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:07,390 DEBUG Processing 610/721 atomic regions from SNP 182941 to 183541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,433 DEBUG Processing 197/563 atomic regions from SNP 58855 to 59455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,449 DEBUG Processing 180/600 atomic regions from SNP 53879 to 54480 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,473 DEBUG Processing 296/664 atomic regions from SNP 88638 to 89238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,579 DEBUG Processing 459/680 atomic regions from SNP 137627 to 138227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,603 DEBUG Processing 611/721 atomic regions from SNP 183241 to 183841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,624 DEBUG Processing 198/563 atomic regions from SNP 59155 to 59755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,659 DEBUG Processing 181/600 atomic regions from SNP 54180 to 54781 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,698 DEBUG Processing 297/664 atomic regions from SNP 88938 to 89538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,803 DEBUG Processing 460/680 atomic regions from SNP 137927 to 138527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,823 DEBUG Processing 612/721 atomic regions from SNP 183541 to 184141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,839 DEBUG Processing 199/563 atomic regions from SNP 59455 to 60055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:07,867 DEBUG Processing 182/600 atomic regions from SNP 54481 to 55082 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,917 DEBUG Processing 298/664 atomic regions from SNP 89238 to 89838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,021 DEBUG Processing 461/680 atomic regions from SNP 138227 to 138827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,037 DEBUG Processing 613/721 atomic regions from SNP 183841 to 184441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,040 DEBUG Processing 200/563 atomic regions from SNP 59755 to 60355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,088 DEBUG Processing 183/600 atomic regions from SNP 54782 to 55383 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,135 DEBUG Processing 299/664 atomic regions from SNP 89538 to 90138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,232 DEBUG Processing 201/563 atomic regions from SNP 60055 to 60655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,240 DEBUG Processing 462/680 atomic regions from SNP 138527 to 139127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,246 DEBUG Processing 614/721 atomic regions from SNP 184141 to 184741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,297 DEBUG Processing 184/600 atomic regions from SNP 55083 to 55684 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,359 DEBUG Processing 300/664 atomic regions from SNP 89838 to 90438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,433 DEBUG Processing 202/563 atomic regions from SNP 60355 to 60955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,463 DEBUG Processing 615/721 atomic regions from SNP 184441 to 185041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,474 DEBUG Processing 463/680 atomic regions from SNP 138827 to 139427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,511 DEBUG Processing 185/600 atomic regions from SNP 55384 to 55985 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,584 DEBUG Processing 301/664 atomic regions from SNP 90138 to 90738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,622 DEBUG Processing 203/563 atomic regions from SNP 60655 to 61255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,673 DEBUG Processing 616/721 atomic regions from SNP 184741 to 185341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,694 DEBUG Processing 464/680 atomic regions from SNP 139127 to 139727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,720 DEBUG Processing 186/600 atomic regions from SNP 55685 to 56286 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,800 DEBUG Processing 302/664 atomic regions from SNP 90438 to 91038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,810 DEBUG Processing 204/563 atomic regions from SNP 60955 to 61555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:08,880 DEBUG Processing 617/721 atomic regions from SNP 185041 to 185641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,928 DEBUG Processing 187/600 atomic regions from SNP 55986 to 56587 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,944 DEBUG Processing 465/680 atomic regions from SNP 139427 to 140027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,998 DEBUG Processing 205/563 atomic regions from SNP 61255 to 61855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,021 DEBUG Processing 303/664 atomic regions from SNP 90738 to 91338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,086 DEBUG Processing 618/721 atomic regions from SNP 185341 to 185941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,159 DEBUG Processing 188/600 atomic regions from SNP 56287 to 56888 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,174 DEBUG Processing 466/680 atomic regions from SNP 139727 to 140327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,192 DEBUG Processing 206/563 atomic regions from SNP 61555 to 62155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,261 DEBUG Processing 304/664 atomic regions from SNP 91038 to 91638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,298 DEBUG Processing 619/721 atomic regions from SNP 185641 to 186241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,366 DEBUG Processing 189/600 atomic regions from SNP 56588 to 57189 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,383 DEBUG Processing 207/563 atomic regions from SNP 61855 to 62455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,393 DEBUG Processing 467/680 atomic regions from SNP 140027 to 140627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,502 DEBUG Processing 620/721 atomic regions from SNP 185941 to 186541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,504 DEBUG Processing 305/664 atomic regions from SNP 91338 to 91938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,567 DEBUG Processing 190/600 atomic regions from SNP 56889 to 57490 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,574 DEBUG Processing 208/563 atomic regions from SNP 62155 to 62755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,610 DEBUG Processing 468/680 atomic regions from SNP 140327 to 140927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,707 DEBUG Processing 621/721 atomic regions from SNP 186241 to 186841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,723 DEBUG Processing 306/664 atomic regions from SNP 91638 to 92238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,767 DEBUG Processing 209/563 atomic regions from SNP 62455 to 63055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,768 DEBUG Processing 191/600 atomic regions from SNP 57190 to 57791 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,824 DEBUG Processing 469/680 atomic regions from SNP 140627 to 141227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,916 DEBUG Processing 622/721 atomic regions from SNP 186541 to 187141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,947 DEBUG Processing 307/664 atomic regions from SNP 91938 to 92538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,968 DEBUG Processing 210/563 atomic regions from SNP 62755 to 63355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:09,973 DEBUG Processing 192/600 atomic regions from SNP 57491 to 58092 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,038 DEBUG Processing 470/680 atomic regions from SNP 140927 to 141527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,144 DEBUG Processing 623/721 atomic regions from SNP 186841 to 187441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,169 DEBUG Processing 211/563 atomic regions from SNP 63055 to 63655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,171 DEBUG Processing 308/664 atomic regions from SNP 92238 to 92838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,188 DEBUG Processing 193/600 atomic regions from SNP 57792 to 58393 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,257 DEBUG Processing 471/680 atomic regions from SNP 141227 to 141827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,369 DEBUG Processing 624/721 atomic regions from SNP 187141 to 187741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,383 DEBUG Processing 212/563 atomic regions from SNP 63355 to 63955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,388 DEBUG Processing 309/664 atomic regions from SNP 92538 to 93138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,412 DEBUG Processing 194/600 atomic regions from SNP 58093 to 58694 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,473 DEBUG Processing 472/680 atomic regions from SNP 141527 to 142127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,574 DEBUG Processing 213/563 atomic regions from SNP 63655 to 64255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,598 DEBUG Processing 625/721 atomic regions from SNP 187441 to 188041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,609 DEBUG Processing 310/664 atomic regions from SNP 92838 to 93438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,639 DEBUG Processing 195/600 atomic regions from SNP 58394 to 58995 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,695 DEBUG Processing 473/680 atomic regions from SNP 141827 to 142427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,773 DEBUG Processing 214/563 atomic regions from SNP 63955 to 64555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:10,819 DEBUG Processing 626/721 atomic regions from SNP 187741 to 188341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,827 DEBUG Processing 311/664 atomic regions from SNP 93138 to 93738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,872 DEBUG Processing 196/600 atomic regions from SNP 58695 to 59296 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,914 DEBUG Processing 474/680 atomic regions from SNP 142127 to 142727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,968 DEBUG Processing 215/563 atomic regions from SNP 64255 to 64855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,038 DEBUG Processing 627/721 atomic regions from SNP 188041 to 188641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,045 DEBUG Processing 312/664 atomic regions from SNP 93438 to 94038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,110 DEBUG Processing 197/600 atomic regions from SNP 58996 to 59597 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,136 DEBUG Processing 475/680 atomic regions from SNP 142427 to 143027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,165 DEBUG Processing 216/563 atomic regions from SNP 64555 to 65155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,259 DEBUG Processing 313/664 atomic regions from SNP 93738 to 94338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,270 DEBUG Processing 628/721 atomic regions from SNP 188341 to 188941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,332 DEBUG Processing 198/600 atomic regions from SNP 59297 to 59898 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,354 DEBUG Processing 217/563 atomic regions from SNP 64855 to 65455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,360 DEBUG Processing 476/680 atomic regions from SNP 142727 to 143327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,472 DEBUG Processing 314/664 atomic regions from SNP 94038 to 94638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,490 DEBUG Processing 629/721 atomic regions from SNP 188641 to 189241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,538 DEBUG Processing 199/600 atomic regions from SNP 59598 to 60199 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,538 DEBUG Processing 218/563 atomic regions from SNP 65155 to 65755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,583 DEBUG Processing 477/680 atomic regions from SNP 143027 to 143627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,692 DEBUG Processing 315/664 atomic regions from SNP 94338 to 94938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,712 DEBUG Processing 630/721 atomic regions from SNP 188941 to 189541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,727 DEBUG Processing 219/563 atomic regions from SNP 65455 to 66055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,754 DEBUG Processing 200/600 atomic regions from SNP 59899 to 60500 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,815 DEBUG Processing 478/680 atomic regions from SNP 143327 to 143927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,916 DEBUG Processing 220/563 atomic regions from SNP 65755 to 66355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:11,921 DEBUG Processing 631/721 atomic regions from SNP 189241 to 189841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,924 DEBUG Processing 316/664 atomic regions from SNP 94638 to 95238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,970 DEBUG Processing 201/600 atomic regions from SNP 60200 to 60801 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,046 DEBUG Processing 479/680 atomic regions from SNP 143627 to 144227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,105 DEBUG Processing 221/563 atomic regions from SNP 66055 to 66655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,137 DEBUG Processing 632/721 atomic regions from SNP 189541 to 190141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,156 DEBUG Processing 317/664 atomic regions from SNP 94938 to 95538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,186 DEBUG Processing 202/600 atomic regions from SNP 60501 to 61102 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,272 DEBUG Processing 480/680 atomic regions from SNP 143927 to 144527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,290 DEBUG Processing 222/563 atomic regions from SNP 66355 to 66955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,347 DEBUG Processing 633/721 atomic regions from SNP 189841 to 190441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,390 DEBUG Processing 318/664 atomic regions from SNP 95238 to 95838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,404 DEBUG Processing 203/600 atomic regions from SNP 60802 to 61403 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,477 DEBUG Processing 223/563 atomic regions from SNP 66655 to 67255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,504 DEBUG Processing 481/680 atomic regions from SNP 144227 to 144827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,556 DEBUG Processing 634/721 atomic regions from SNP 190141 to 190741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,622 DEBUG Processing 204/600 atomic regions from SNP 61103 to 61704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,629 DEBUG Processing 319/664 atomic regions from SNP 95538 to 96138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,660 DEBUG Processing 224/563 atomic regions from SNP 66955 to 67555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,736 DEBUG Processing 482/680 atomic regions from SNP 144527 to 145127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,761 DEBUG Processing 635/721 atomic regions from SNP 190441 to 191041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,839 DEBUG Processing 205/600 atomic regions from SNP 61404 to 62005 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,848 DEBUG Processing 225/563 atomic regions from SNP 67255 to 67855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:12,862 DEBUG Processing 320/664 atomic regions from SNP 95838 to 96438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,965 DEBUG Processing 636/721 atomic regions from SNP 190741 to 191341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,969 DEBUG Processing 483/680 atomic regions from SNP 144827 to 145427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,039 DEBUG Processing 226/563 atomic regions from SNP 67555 to 68155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,091 DEBUG Processing 206/600 atomic regions from SNP 61705 to 62306 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,096 DEBUG Processing 321/664 atomic regions from SNP 96138 to 96738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,175 DEBUG Processing 637/721 atomic regions from SNP 191041 to 191641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,205 DEBUG Processing 484/680 atomic regions from SNP 145127 to 145727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,231 DEBUG Processing 227/563 atomic regions from SNP 67855 to 68455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,327 DEBUG Processing 322/664 atomic regions from SNP 96438 to 97038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,340 DEBUG Processing 207/600 atomic regions from SNP 62006 to 62607 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,380 DEBUG Processing 638/721 atomic regions from SNP 191341 to 191941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,420 DEBUG Processing 228/563 atomic regions from SNP 68155 to 68755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,426 DEBUG Processing 485/680 atomic regions from SNP 145427 to 146027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,551 DEBUG Processing 323/664 atomic regions from SNP 96738 to 97338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,584 DEBUG Processing 208/600 atomic regions from SNP 62307 to 62908 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,584 DEBUG Processing 639/721 atomic regions from SNP 191641 to 192241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,607 DEBUG Processing 229/563 atomic regions from SNP 68455 to 69055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,654 DEBUG Processing 486/680 atomic regions from SNP 145727 to 146327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,785 DEBUG Processing 324/664 atomic regions from SNP 97038 to 97638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,791 DEBUG Processing 640/721 atomic regions from SNP 191941 to 192541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,798 DEBUG Processing 230/563 atomic regions from SNP 68755 to 69355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:13,803 DEBUG Processing 209/600 atomic regions from SNP 62608 to 63209 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,882 DEBUG Processing 487/680 atomic regions from SNP 146027 to 146627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,988 DEBUG Processing 231/563 atomic regions from SNP 69055 to 69655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,000 DEBUG Processing 641/721 atomic regions from SNP 192241 to 192841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,021 DEBUG Processing 325/664 atomic regions from SNP 97338 to 97938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,027 DEBUG Processing 210/600 atomic regions from SNP 62909 to 63510 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,120 DEBUG Processing 488/680 atomic regions from SNP 146327 to 146927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,181 DEBUG Processing 232/563 atomic regions from SNP 69355 to 69955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,213 DEBUG Processing 642/721 atomic regions from SNP 192541 to 193141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,249 DEBUG Processing 211/600 atomic regions from SNP 63210 to 63811 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,267 DEBUG Processing 326/664 atomic regions from SNP 97638 to 98238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,356 DEBUG Processing 489/680 atomic regions from SNP 146627 to 147227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,370 DEBUG Processing 233/563 atomic regions from SNP 69655 to 70255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,420 DEBUG Processing 643/721 atomic regions from SNP 192841 to 193441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,470 DEBUG Processing 212/600 atomic regions from SNP 63511 to 64112 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,507 DEBUG Processing 327/664 atomic regions from SNP 97938 to 98538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,563 DEBUG Processing 234/563 atomic regions from SNP 69955 to 70555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,594 DEBUG Processing 490/680 atomic regions from SNP 146927 to 147527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,649 DEBUG Processing 644/721 atomic regions from SNP 193141 to 193741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,688 DEBUG Processing 213/600 atomic regions from SNP 63812 to 64413 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,747 DEBUG Processing 328/664 atomic regions from SNP 98238 to 98838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,756 DEBUG Processing 235/563 atomic regions from SNP 70255 to 70855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,831 DEBUG Processing 491/680 atomic regions from SNP 147227 to 147827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,883 DEBUG Processing 645/721 atomic regions from SNP 193441 to 194041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,903 DEBUG Processing 214/600 atomic regions from SNP 64113 to 64714 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,952 DEBUG Processing 236/563 atomic regions from SNP 70555 to 71155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:14,985 DEBUG Processing 329/664 atomic regions from SNP 98538 to 99138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,068 DEBUG Processing 492/680 atomic regions from SNP 147527 to 148127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,093 DEBUG Processing 646/721 atomic regions from SNP 193741 to 194341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,113 DEBUG Processing 215/600 atomic regions from SNP 64414 to 65015 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,148 DEBUG Processing 237/563 atomic regions from SNP 70855 to 71455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,226 DEBUG Processing 330/664 atomic regions from SNP 98838 to 99438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,298 DEBUG Processing 647/721 atomic regions from SNP 194041 to 194641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,304 DEBUG Processing 493/680 atomic regions from SNP 147827 to 148427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,324 DEBUG Processing 216/600 atomic regions from SNP 64715 to 65316 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,338 DEBUG Processing 238/563 atomic regions from SNP 71155 to 71755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,457 DEBUG Processing 331/664 atomic regions from SNP 99138 to 99738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,506 DEBUG Processing 648/721 atomic regions from SNP 194341 to 194941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,530 DEBUG Processing 239/563 atomic regions from SNP 71455 to 72055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,534 DEBUG Processing 217/600 atomic regions from SNP 65016 to 65617 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,539 DEBUG Processing 494/680 atomic regions from SNP 148127 to 148727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,683 DEBUG Processing 332/664 atomic regions from SNP 99438 to 100038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,718 DEBUG Processing 649/721 atomic regions from SNP 194641 to 195241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,724 DEBUG Processing 240/563 atomic regions from SNP 71755 to 72355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,750 DEBUG Processing 218/600 atomic regions from SNP 65317 to 65918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,769 DEBUG Processing 495/680 atomic regions from SNP 148427 to 149027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,913 DEBUG Processing 333/664 atomic regions from SNP 99738 to 100338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,924 DEBUG Processing 241/563 atomic regions from SNP 72055 to 72655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:15,936 DEBUG Processing 650/721 atomic regions from SNP 194941 to 195541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,967 DEBUG Processing 219/600 atomic regions from SNP 65618 to 66219 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,999 DEBUG Processing 496/680 atomic regions from SNP 148727 to 149327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,123 DEBUG Processing 242/563 atomic regions from SNP 72355 to 72955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,142 DEBUG Processing 334/664 atomic regions from SNP 100038 to 100638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,150 DEBUG Processing 651/721 atomic regions from SNP 195241 to 195841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,184 DEBUG Processing 220/600 atomic regions from SNP 65919 to 66520 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,228 DEBUG Processing 497/680 atomic regions from SNP 149027 to 149627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,315 DEBUG Processing 243/563 atomic regions from SNP 72655 to 73255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,359 DEBUG Processing 652/721 atomic regions from SNP 195541 to 196141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,369 DEBUG Processing 335/664 atomic regions from SNP 100338 to 100938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,401 DEBUG Processing 221/600 atomic regions from SNP 66220 to 66821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,456 DEBUG Processing 498/680 atomic regions from SNP 149327 to 149927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,505 DEBUG Processing 244/563 atomic regions from SNP 72955 to 73555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,569 DEBUG Processing 653/721 atomic regions from SNP 195841 to 196441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,596 DEBUG Processing 336/664 atomic regions from SNP 100638 to 101238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,620 DEBUG Processing 222/600 atomic regions from SNP 66521 to 67122 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,682 DEBUG Processing 499/680 atomic regions from SNP 149627 to 150227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,696 DEBUG Processing 245/563 atomic regions from SNP 73255 to 73855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,777 DEBUG Processing 654/721 atomic regions from SNP 196141 to 196741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,828 DEBUG Processing 337/664 atomic regions from SNP 100938 to 101538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,838 DEBUG Processing 223/600 atomic regions from SNP 66822 to 67423 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,891 DEBUG Processing 246/563 atomic regions from SNP 73555 to 74155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:16,913 DEBUG Processing 500/680 atomic regions from SNP 149927 to 150527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,981 DEBUG Processing 655/721 atomic regions from SNP 196441 to 197041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,054 DEBUG Processing 224/600 atomic regions from SNP 67123 to 67724 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,061 DEBUG Processing 338/664 atomic regions from SNP 101238 to 101838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,088 DEBUG Processing 247/563 atomic regions from SNP 73855 to 74455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,141 DEBUG Processing 501/680 atomic regions from SNP 150227 to 150827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,190 DEBUG Processing 656/721 atomic regions from SNP 196741 to 197341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,266 DEBUG Processing 225/600 atomic regions from SNP 67424 to 68025 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,280 DEBUG Processing 248/563 atomic regions from SNP 74155 to 74755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,291 DEBUG Processing 339/664 atomic regions from SNP 101538 to 102138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,371 DEBUG Processing 502/680 atomic regions from SNP 150527 to 151127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,397 DEBUG Processing 657/721 atomic regions from SNP 197041 to 197641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,471 DEBUG Processing 249/563 atomic regions from SNP 74455 to 75055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,476 DEBUG Processing 226/600 atomic regions from SNP 67725 to 68326 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,516 DEBUG Processing 340/664 atomic regions from SNP 101838 to 102438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,602 DEBUG Processing 503/680 atomic regions from SNP 150827 to 151427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,608 DEBUG Processing 658/721 atomic regions from SNP 197341 to 197941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,662 DEBUG Processing 250/563 atomic regions from SNP 74755 to 75355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,689 DEBUG Processing 227/600 atomic regions from SNP 68026 to 68627 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,745 DEBUG Processing 341/664 atomic regions from SNP 102138 to 102738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,823 DEBUG Processing 659/721 atomic regions from SNP 197641 to 198241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,838 DEBUG Processing 504/680 atomic regions from SNP 151127 to 151727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,852 DEBUG Processing 251/563 atomic regions from SNP 75055 to 75655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:17,899 DEBUG Processing 228/600 atomic regions from SNP 68327 to 68928 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,967 DEBUG Processing 342/664 atomic regions from SNP 102438 to 103038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,040 DEBUG Processing 660/721 atomic regions from SNP 197941 to 198541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,050 DEBUG Processing 252/563 atomic regions from SNP 75355 to 75955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,081 DEBUG Processing 505/680 atomic regions from SNP 151427 to 152027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,114 DEBUG Processing 229/600 atomic regions from SNP 68628 to 69229 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,190 DEBUG Processing 343/664 atomic regions from SNP 102738 to 103338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,244 DEBUG Processing 253/563 atomic regions from SNP 75655 to 76255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,254 DEBUG Processing 661/721 atomic regions from SNP 198241 to 198841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,319 DEBUG Processing 506/680 atomic regions from SNP 151727 to 152327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,324 DEBUG Processing 230/600 atomic regions from SNP 68929 to 69530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,404 DEBUG Processing 344/664 atomic regions from SNP 103038 to 103638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,434 DEBUG Processing 254/563 atomic regions from SNP 75955 to 76555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,462 DEBUG Processing 662/721 atomic regions from SNP 198541 to 199141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,542 DEBUG Processing 231/600 atomic regions from SNP 69230 to 69831 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,556 DEBUG Processing 507/680 atomic regions from SNP 152027 to 152627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,623 DEBUG Processing 255/563 atomic regions from SNP 76255 to 76855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,631 DEBUG Processing 345/664 atomic regions from SNP 103338 to 103938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,671 DEBUG Processing 663/721 atomic regions from SNP 198841 to 199441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,756 DEBUG Processing 232/600 atomic regions from SNP 69531 to 70132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,792 DEBUG Processing 508/680 atomic regions from SNP 152327 to 152927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,808 DEBUG Processing 256/563 atomic regions from SNP 76555 to 77155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:18,854 DEBUG Processing 346/664 atomic regions from SNP 103638 to 104238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,877 DEBUG Processing 664/721 atomic regions from SNP 199141 to 199741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,967 DEBUG Processing 233/600 atomic regions from SNP 69832 to 70433 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,001 DEBUG Processing 257/563 atomic regions from SNP 76855 to 77455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,036 DEBUG Processing 509/680 atomic regions from SNP 152627 to 153227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,083 DEBUG Processing 347/664 atomic regions from SNP 103938 to 104538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,092 DEBUG Processing 665/721 atomic regions from SNP 199441 to 200041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,179 DEBUG Processing 234/600 atomic regions from SNP 70133 to 70734 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,193 DEBUG Processing 258/563 atomic regions from SNP 77155 to 77755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,264 DEBUG Processing 510/680 atomic regions from SNP 152927 to 153527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,309 DEBUG Processing 666/721 atomic regions from SNP 199741 to 200341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,313 DEBUG Processing 348/664 atomic regions from SNP 104238 to 104838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,382 DEBUG Processing 259/563 atomic regions from SNP 77455 to 78055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,383 DEBUG Processing 235/600 atomic regions from SNP 70434 to 71035 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,483 DEBUG Processing 511/680 atomic regions from SNP 153227 to 153827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,514 DEBUG Processing 667/721 atomic regions from SNP 200041 to 200641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,536 DEBUG Processing 349/664 atomic regions from SNP 104538 to 105138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,573 DEBUG Processing 260/563 atomic regions from SNP 77755 to 78355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,588 DEBUG Processing 236/600 atomic regions from SNP 70735 to 71336 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,700 DEBUG Processing 512/680 atomic regions from SNP 153527 to 154127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,723 DEBUG Processing 668/721 atomic regions from SNP 200341 to 200941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,763 DEBUG Processing 350/664 atomic regions from SNP 104838 to 105438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,764 DEBUG Processing 261/563 atomic regions from SNP 78055 to 78655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,797 DEBUG Processing 237/600 atomic regions from SNP 71036 to 71637 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,915 DEBUG Processing 513/680 atomic regions from SNP 153827 to 154427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,930 DEBUG Processing 669/721 atomic regions from SNP 200641 to 201241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,960 DEBUG Processing 262/563 atomic regions from SNP 78355 to 78955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:19,990 DEBUG Processing 351/664 atomic regions from SNP 105138 to 105738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,005 DEBUG Processing 238/600 atomic regions from SNP 71337 to 71938 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,127 DEBUG Processing 514/680 atomic regions from SNP 154127 to 154727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,138 DEBUG Processing 670/721 atomic regions from SNP 200941 to 201541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,152 DEBUG Processing 263/563 atomic regions from SNP 78655 to 79255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,220 DEBUG Processing 239/600 atomic regions from SNP 71638 to 72239 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,222 DEBUG Processing 352/664 atomic regions from SNP 105438 to 106038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,345 DEBUG Processing 264/563 atomic regions from SNP 78955 to 79555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,346 DEBUG Processing 671/721 atomic regions from SNP 201241 to 201841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,356 DEBUG Processing 515/680 atomic regions from SNP 154427 to 155027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,432 DEBUG Processing 240/600 atomic regions from SNP 71939 to 72540 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,448 DEBUG Processing 353/664 atomic regions from SNP 105738 to 106338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,537 DEBUG Processing 265/563 atomic regions from SNP 79255 to 79855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,555 DEBUG Processing 672/721 atomic regions from SNP 201541 to 202141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,603 DEBUG Processing 516/680 atomic regions from SNP 154727 to 155327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,643 DEBUG Processing 241/600 atomic regions from SNP 72240 to 72841 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,676 DEBUG Processing 354/664 atomic regions from SNP 106038 to 106638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,738 DEBUG Processing 266/563 atomic regions from SNP 79555 to 80155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,773 DEBUG Processing 673/721 atomic regions from SNP 201841 to 202441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,854 DEBUG Processing 242/600 atomic regions from SNP 72541 to 73142 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,855 DEBUG Processing 517/680 atomic regions from SNP 155027 to 155627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,906 DEBUG Processing 355/664 atomic regions from SNP 106338 to 106938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,933 DEBUG Processing 267/563 atomic regions from SNP 79855 to 80455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:20,990 DEBUG Processing 674/721 atomic regions from SNP 202141 to 202741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,068 DEBUG Processing 243/600 atomic regions from SNP 72842 to 73443 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,093 DEBUG Processing 518/680 atomic regions from SNP 155327 to 155927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,135 DEBUG Processing 356/664 atomic regions from SNP 106638 to 107238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,136 DEBUG Processing 268/563 atomic regions from SNP 80155 to 80755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,214 DEBUG Processing 675/721 atomic regions from SNP 202441 to 203041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,280 DEBUG Processing 244/600 atomic regions from SNP 73143 to 73744 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,317 DEBUG Processing 519/680 atomic regions from SNP 155627 to 156227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,336 DEBUG Processing 269/563 atomic regions from SNP 80455 to 81055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,359 DEBUG Processing 357/664 atomic regions from SNP 106938 to 107538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,433 DEBUG Processing 676/721 atomic regions from SNP 202741 to 203341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,487 DEBUG Processing 245/600 atomic regions from SNP 73444 to 74045 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,537 DEBUG Processing 270/563 atomic regions from SNP 80755 to 81355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,541 DEBUG Processing 520/680 atomic regions from SNP 155927 to 156527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,581 DEBUG Processing 358/664 atomic regions from SNP 107238 to 107838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,649 DEBUG Processing 677/721 atomic regions from SNP 203041 to 203641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,696 DEBUG Processing 246/600 atomic regions from SNP 73745 to 74346 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,736 DEBUG Processing 271/563 atomic regions from SNP 81055 to 81655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:21,776 DEBUG Processing 521/680 atomic regions from SNP 156227 to 156827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,814 DEBUG Processing 359/664 atomic regions from SNP 107538 to 108138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,863 DEBUG Processing 678/721 atomic regions from SNP 203341 to 203941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,911 DEBUG Processing 247/600 atomic regions from SNP 74046 to 74647 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,934 DEBUG Processing 272/563 atomic regions from SNP 81355 to 81955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,016 DEBUG Processing 522/680 atomic regions from SNP 156527 to 157127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,051 DEBUG Processing 360/664 atomic regions from SNP 107838 to 108438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,078 DEBUG Processing 679/721 atomic regions from SNP 203641 to 204241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,126 DEBUG Processing 248/600 atomic regions from SNP 74347 to 74948 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,140 DEBUG Processing 273/563 atomic regions from SNP 81655 to 82255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,255 DEBUG Processing 523/680 atomic regions from SNP 156827 to 157427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,292 DEBUG Processing 361/664 atomic regions from SNP 108138 to 108738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,310 DEBUG Processing 680/721 atomic regions from SNP 203941 to 204541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,334 DEBUG Processing 274/563 atomic regions from SNP 81955 to 82555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,337 DEBUG Processing 249/600 atomic regions from SNP 74648 to 75249 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,487 DEBUG Processing 524/680 atomic regions from SNP 157127 to 157727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,531 DEBUG Processing 275/563 atomic regions from SNP 82255 to 82855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,549 DEBUG Processing 250/600 atomic regions from SNP 74949 to 75550 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,555 DEBUG Processing 362/664 atomic regions from SNP 108438 to 109038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,557 DEBUG Processing 681/721 atomic regions from SNP 204241 to 204841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,743 DEBUG Processing 525/680 atomic regions from SNP 157427 to 158027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,754 DEBUG Processing 276/563 atomic regions from SNP 82555 to 83155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,790 DEBUG Processing 251/600 atomic regions from SNP 75250 to 75851 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,815 DEBUG Processing 363/664 atomic regions from SNP 108738 to 109338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,828 DEBUG Processing 682/721 atomic regions from SNP 204541 to 205141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,951 DEBUG Processing 277/563 atomic regions from SNP 82855 to 83455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:22,979 DEBUG Processing 526/680 atomic regions from SNP 157727 to 158327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,008 DEBUG Processing 252/600 atomic regions from SNP 75551 to 76152 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,045 DEBUG Processing 364/664 atomic regions from SNP 109038 to 109638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,059 DEBUG Processing 683/721 atomic regions from SNP 204841 to 205441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,145 DEBUG Processing 278/563 atomic regions from SNP 83155 to 83755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,215 DEBUG Processing 527/680 atomic regions from SNP 158027 to 158627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,228 DEBUG Processing 253/600 atomic regions from SNP 75852 to 76453 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,290 DEBUG Processing 365/664 atomic regions from SNP 109338 to 109938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,302 DEBUG Processing 684/721 atomic regions from SNP 205141 to 205741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,344 DEBUG Processing 279/563 atomic regions from SNP 83455 to 84055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,443 DEBUG Processing 254/600 atomic regions from SNP 76153 to 76754 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,446 DEBUG Processing 528/680 atomic regions from SNP 158327 to 158927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,528 DEBUG Processing 366/664 atomic regions from SNP 109638 to 110238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,547 DEBUG Processing 280/563 atomic regions from SNP 83755 to 84355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,552 DEBUG Processing 685/721 atomic regions from SNP 205441 to 206041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,662 DEBUG Processing 255/600 atomic regions from SNP 76454 to 77055 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,679 DEBUG Processing 529/680 atomic regions from SNP 158627 to 159227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,761 DEBUG Processing 281/563 atomic regions from SNP 84055 to 84655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:23,768 DEBUG Processing 367/664 atomic regions from SNP 109938 to 110538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,802 DEBUG Processing 686/721 atomic regions from SNP 205741 to 206341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,879 DEBUG Processing 256/600 atomic regions from SNP 76755 to 77356 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,912 DEBUG Processing 530/680 atomic regions from SNP 158927 to 159527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,968 DEBUG Processing 282/563 atomic regions from SNP 84355 to 84955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,008 DEBUG Processing 368/664 atomic regions from SNP 110238 to 110838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,045 DEBUG Processing 687/721 atomic regions from SNP 206041 to 206641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,096 DEBUG Processing 257/600 atomic regions from SNP 77056 to 77657 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,146 DEBUG Processing 531/680 atomic regions from SNP 159227 to 159827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,170 DEBUG Processing 283/563 atomic regions from SNP 84655 to 85255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,243 DEBUG Processing 369/664 atomic regions from SNP 110538 to 111138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,284 DEBUG Processing 688/721 atomic regions from SNP 206341 to 206941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,313 DEBUG Processing 258/600 atomic regions from SNP 77357 to 77958 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,364 DEBUG Processing 284/563 atomic regions from SNP 84955 to 85555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,381 DEBUG Processing 532/680 atomic regions from SNP 159527 to 160127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,479 DEBUG Processing 370/664 atomic regions from SNP 110838 to 111438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,534 DEBUG Processing 259/600 atomic regions from SNP 77658 to 78259 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,534 DEBUG Processing 689/721 atomic regions from SNP 206641 to 207241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,561 DEBUG Processing 285/563 atomic regions from SNP 85255 to 85855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,622 DEBUG Processing 533/680 atomic regions from SNP 159827 to 160427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,713 DEBUG Processing 371/664 atomic regions from SNP 111138 to 111738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,755 DEBUG Processing 260/600 atomic regions from SNP 77959 to 78560 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,764 DEBUG Processing 286/563 atomic regions from SNP 85555 to 86155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:24,785 DEBUG Processing 690/721 atomic regions from SNP 206941 to 207541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,859 DEBUG Processing 534/680 atomic regions from SNP 160127 to 160727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,946 DEBUG Processing 372/664 atomic regions from SNP 111438 to 112038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,970 DEBUG Processing 261/600 atomic regions from SNP 78260 to 78861 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,971 DEBUG Processing 287/563 atomic regions from SNP 85855 to 86455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,036 DEBUG Processing 691/721 atomic regions from SNP 207241 to 207841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,104 DEBUG Processing 535/680 atomic regions from SNP 160427 to 161027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,173 DEBUG Processing 288/563 atomic regions from SNP 86155 to 86755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,183 DEBUG Processing 262/600 atomic regions from SNP 78561 to 79162 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,193 DEBUG Processing 373/664 atomic regions from SNP 111738 to 112338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,280 DEBUG Processing 692/721 atomic regions from SNP 207541 to 208141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,338 DEBUG Processing 536/680 atomic regions from SNP 160727 to 161327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,367 DEBUG Processing 289/563 atomic regions from SNP 86455 to 87055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,399 DEBUG Processing 263/600 atomic regions from SNP 78862 to 79463 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,434 DEBUG Processing 374/664 atomic regions from SNP 112038 to 112638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,512 DEBUG Processing 693/721 atomic regions from SNP 207841 to 208441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,562 DEBUG Processing 537/680 atomic regions from SNP 161027 to 161627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,562 DEBUG Processing 290/563 atomic regions from SNP 86755 to 87355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,615 DEBUG Processing 264/600 atomic regions from SNP 79163 to 79764 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,664 DEBUG Processing 375/664 atomic regions from SNP 112338 to 112938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,755 DEBUG Processing 694/721 atomic regions from SNP 208141 to 208741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,759 DEBUG Processing 291/563 atomic regions from SNP 87055 to 87655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,786 DEBUG Processing 538/680 atomic regions from SNP 161327 to 161927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,829 DEBUG Processing 265/600 atomic regions from SNP 79464 to 80065 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,890 DEBUG Processing 376/664 atomic regions from SNP 112638 to 113238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,954 DEBUG Processing 292/563 atomic regions from SNP 87355 to 87955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:25,981 DEBUG Processing 695/721 atomic regions from SNP 208441 to 209041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,006 DEBUG Processing 539/680 atomic regions from SNP 161627 to 162227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,039 DEBUG Processing 266/600 atomic regions from SNP 79765 to 80366 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,119 DEBUG Processing 377/664 atomic regions from SNP 112938 to 113538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,166 DEBUG Processing 293/563 atomic regions from SNP 87655 to 88255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,219 DEBUG Processing 696/721 atomic regions from SNP 208741 to 209341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,229 DEBUG Processing 540/680 atomic regions from SNP 161927 to 162527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,247 DEBUG Processing 267/600 atomic regions from SNP 80066 to 80667 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,359 DEBUG Processing 378/664 atomic regions from SNP 113238 to 113838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,365 DEBUG Processing 294/563 atomic regions from SNP 87955 to 88555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,454 DEBUG Processing 541/680 atomic regions from SNP 162227 to 162827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,457 DEBUG Processing 268/600 atomic regions from SNP 80367 to 80968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,474 DEBUG Processing 697/721 atomic regions from SNP 209041 to 209641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,568 DEBUG Processing 295/563 atomic regions from SNP 88255 to 88855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,602 DEBUG Processing 379/664 atomic regions from SNP 113538 to 114138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,647 DEBUG Segmenting atomic regions: 2025-01-31 09:55:26,671 DEBUG Processing 269/600 atomic regions from SNP 80668 to 81268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,683 DEBUG Processing 542/680 atomic regions from SNP 162527 to 163127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,717 DEBUG Processing 1/534 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,718 DEBUG Processing 698/721 atomic regions from SNP 209341 to 209941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,766 DEBUG Processing 296/563 atomic regions from SNP 88555 to 89155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:26,847 DEBUG Processing 380/664 atomic regions from SNP 113838 to 114438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,888 DEBUG Processing 270/600 atomic regions from SNP 80968 to 81568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,918 DEBUG Processing 543/680 atomic regions from SNP 162827 to 163427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,924 DEBUG Processing 2/534 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,963 DEBUG Processing 699/721 atomic regions from SNP 209641 to 210241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,971 DEBUG Processing 297/563 atomic regions from SNP 88855 to 89455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,079 DEBUG Processing 381/664 atomic regions from SNP 114138 to 114738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,101 DEBUG Processing 271/600 atomic regions from SNP 81268 to 81868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,127 DEBUG Processing 3/534 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,163 DEBUG Processing 544/680 atomic regions from SNP 163127 to 163727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,175 DEBUG Processing 298/563 atomic regions from SNP 89155 to 89755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,207 DEBUG Processing 700/721 atomic regions from SNP 209941 to 210541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,305 DEBUG Processing 382/664 atomic regions from SNP 114438 to 115038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,310 DEBUG Processing 272/600 atomic regions from SNP 81568 to 82168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,330 DEBUG Processing 4/534 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,378 DEBUG Processing 299/563 atomic regions from SNP 89455 to 90055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,413 DEBUG Processing 545/680 atomic regions from SNP 163427 to 164027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,453 DEBUG Processing 701/721 atomic regions from SNP 210241 to 210841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,523 DEBUG Processing 273/600 atomic regions from SNP 81868 to 82468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,533 DEBUG Processing 383/664 atomic regions from SNP 114738 to 115338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,535 DEBUG Processing 5/534 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,584 DEBUG Processing 300/563 atomic regions from SNP 89755 to 90355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,655 DEBUG Processing 546/680 atomic regions from SNP 163727 to 164327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,687 DEBUG Processing 702/721 atomic regions from SNP 210541 to 211141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,734 DEBUG Processing 274/600 atomic regions from SNP 82168 to 82768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,743 DEBUG Processing 6/534 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,767 DEBUG Processing 384/664 atomic regions from SNP 115038 to 115638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,789 DEBUG Processing 301/563 atomic regions from SNP 90055 to 90655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,891 DEBUG Processing 547/680 atomic regions from SNP 164027 to 164627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,916 DEBUG Processing 703/721 atomic regions from SNP 210841 to 211441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,946 DEBUG Processing 7/534 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,950 DEBUG Processing 275/600 atomic regions from SNP 82468 to 83068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,993 DEBUG Processing 302/563 atomic regions from SNP 90355 to 90955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:27,994 DEBUG Processing 385/664 atomic regions from SNP 115338 to 115938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,123 DEBUG Processing 548/680 atomic regions from SNP 164327 to 164927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,144 DEBUG Processing 704/721 atomic regions from SNP 211141 to 211741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,153 DEBUG Processing 8/534 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,166 DEBUG Processing 276/600 atomic regions from SNP 82768 to 83368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,203 DEBUG Processing 303/563 atomic regions from SNP 90655 to 91255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,226 DEBUG Processing 386/664 atomic regions from SNP 115638 to 116238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,352 DEBUG Processing 549/680 atomic regions from SNP 164627 to 165227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,362 DEBUG Processing 9/534 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,379 DEBUG Processing 277/600 atomic regions from SNP 83068 to 83668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,386 DEBUG Processing 705/721 atomic regions from SNP 211441 to 212041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,417 DEBUG Processing 304/563 atomic regions from SNP 90955 to 91555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,455 DEBUG Processing 387/664 atomic regions from SNP 115938 to 116538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,566 DEBUG Processing 10/534 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,590 DEBUG Processing 550/680 atomic regions from SNP 164927 to 165527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,595 DEBUG Processing 278/600 atomic regions from SNP 83368 to 83968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,633 DEBUG Processing 305/563 atomic regions from SNP 91255 to 91855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,636 DEBUG Processing 706/721 atomic regions from SNP 211741 to 212341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,698 DEBUG Processing 388/664 atomic regions from SNP 116238 to 116838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,762 DEBUG Processing 11/534 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,814 DEBUG Processing 279/600 atomic regions from SNP 83668 to 84268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,843 DEBUG Processing 306/563 atomic regions from SNP 91555 to 92155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:28,847 DEBUG Processing 551/680 atomic regions from SNP 165227 to 165827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,874 DEBUG Processing 707/721 atomic regions from SNP 212041 to 212641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,921 DEBUG Processing 389/664 atomic regions from SNP 116538 to 117138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,961 DEBUG Processing 12/534 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,022 DEBUG Processing 280/600 atomic regions from SNP 83968 to 84568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,052 DEBUG Processing 307/563 atomic regions from SNP 91855 to 92455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,100 DEBUG Processing 552/680 atomic regions from SNP 165527 to 166127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,114 DEBUG Processing 708/721 atomic regions from SNP 212341 to 212941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,148 DEBUG Processing 390/664 atomic regions from SNP 116838 to 117438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,178 DEBUG Processing 13/534 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,232 DEBUG Processing 281/600 atomic regions from SNP 84268 to 84868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,255 DEBUG Processing 308/563 atomic regions from SNP 92155 to 92755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,335 DEBUG Processing 553/680 atomic regions from SNP 165827 to 166427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,344 DEBUG Processing 709/721 atomic regions from SNP 212641 to 213241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,381 DEBUG Processing 391/664 atomic regions from SNP 117138 to 117738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,399 DEBUG Processing 14/534 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,447 DEBUG Processing 282/600 atomic regions from SNP 84568 to 85168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,462 DEBUG Processing 309/563 atomic regions from SNP 92455 to 93055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,574 DEBUG Processing 554/680 atomic regions from SNP 166127 to 166727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,595 DEBUG Processing 710/721 atomic regions from SNP 212941 to 213541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,616 DEBUG Processing 15/534 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,619 DEBUG Processing 392/664 atomic regions from SNP 117438 to 118038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,666 DEBUG Processing 283/600 atomic regions from SNP 84868 to 85468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,667 DEBUG Processing 310/563 atomic regions from SNP 92755 to 93355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,817 DEBUG Processing 555/680 atomic regions from SNP 166427 to 167027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,838 DEBUG Processing 16/534 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,849 DEBUG Processing 711/721 atomic regions from SNP 213241 to 213841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,858 DEBUG Processing 393/664 atomic regions from SNP 117738 to 118338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,879 DEBUG Processing 311/563 atomic regions from SNP 93055 to 93655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:29,886 DEBUG Processing 284/600 atomic regions from SNP 85168 to 85768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,050 DEBUG Processing 17/534 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,063 DEBUG Processing 556/680 atomic regions from SNP 166727 to 167327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,091 DEBUG Processing 312/563 atomic regions from SNP 93355 to 93955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,097 DEBUG Processing 394/664 atomic regions from SNP 118038 to 118638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,100 DEBUG Processing 712/721 atomic regions from SNP 213541 to 214141 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,105 DEBUG Processing 285/600 atomic regions from SNP 85468 to 86068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,271 DEBUG Processing 18/534 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,306 DEBUG Processing 313/563 atomic regions from SNP 93655 to 94255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,317 DEBUG Processing 557/680 atomic regions from SNP 167027 to 167627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,328 DEBUG Processing 286/600 atomic regions from SNP 85768 to 86368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,348 DEBUG Processing 395/664 atomic regions from SNP 118338 to 118938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,372 DEBUG Processing 713/721 atomic regions from SNP 213841 to 214441 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,483 DEBUG Processing 19/534 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,516 DEBUG Processing 314/563 atomic regions from SNP 93955 to 94555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,550 DEBUG Processing 287/600 atomic regions from SNP 86068 to 86668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,565 DEBUG Processing 558/680 atomic regions from SNP 167327 to 167927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,585 DEBUG Processing 396/664 atomic regions from SNP 118638 to 119238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,634 DEBUG Processing 714/721 atomic regions from SNP 214141 to 214741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,683 DEBUG Processing 20/534 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,720 DEBUG Processing 315/563 atomic regions from SNP 94255 to 94855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,772 DEBUG Processing 288/600 atomic regions from SNP 86368 to 86968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,812 DEBUG Processing 559/680 atomic regions from SNP 167627 to 168227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,824 DEBUG Processing 397/664 atomic regions from SNP 118938 to 119538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,888 DEBUG Processing 21/534 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,894 DEBUG Processing 715/721 atomic regions from SNP 214441 to 215041 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,943 DEBUG Processing 316/563 atomic regions from SNP 94555 to 95155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:30,987 DEBUG Processing 289/600 atomic regions from SNP 86668 to 87268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,050 DEBUG Processing 560/680 atomic regions from SNP 167927 to 168527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,061 DEBUG Processing 398/664 atomic regions from SNP 119238 to 119838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,109 DEBUG Processing 22/534 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,151 DEBUG Processing 716/721 atomic regions from SNP 214741 to 215341 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,157 DEBUG Processing 317/563 atomic regions from SNP 94855 to 95455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,200 DEBUG Processing 290/600 atomic regions from SNP 86968 to 87568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,304 DEBUG Processing 561/680 atomic regions from SNP 168227 to 168827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,329 DEBUG Processing 399/664 atomic regions from SNP 119538 to 120138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,349 DEBUG Processing 23/534 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,385 DEBUG Processing 318/563 atomic regions from SNP 95155 to 95755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,427 DEBUG Processing 717/721 atomic regions from SNP 215041 to 215641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,434 DEBUG Processing 291/600 atomic regions from SNP 87268 to 87868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,543 DEBUG Processing 562/680 atomic regions from SNP 168527 to 169127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,554 DEBUG Processing 24/534 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,570 DEBUG Processing 400/664 atomic regions from SNP 119838 to 120438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,590 DEBUG Processing 319/563 atomic regions from SNP 95455 to 96055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,644 DEBUG Processing 292/600 atomic regions from SNP 87568 to 88168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,668 DEBUG Processing 718/721 atomic regions from SNP 215341 to 215941 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,759 DEBUG Processing 25/534 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,783 DEBUG Processing 563/680 atomic regions from SNP 168827 to 169427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,798 DEBUG Processing 320/563 atomic regions from SNP 95755 to 96355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:31,810 DEBUG Processing 401/664 atomic regions from SNP 120138 to 120738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,853 DEBUG Processing 293/600 atomic regions from SNP 87868 to 88468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,904 DEBUG Processing 719/721 atomic regions from SNP 215641 to 216241 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,965 DEBUG Processing 26/534 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,005 DEBUG Processing 321/563 atomic regions from SNP 96055 to 96655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,021 DEBUG Processing 564/680 atomic regions from SNP 169127 to 169727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,061 DEBUG Processing 402/664 atomic regions from SNP 120438 to 121038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,071 DEBUG Processing 294/600 atomic regions from SNP 88168 to 88768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,140 DEBUG Processing 720/721 atomic regions from SNP 215941 to 216541 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,169 DEBUG Processing 27/534 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,211 DEBUG Processing 322/563 atomic regions from SNP 96355 to 96955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,258 DEBUG Processing 565/680 atomic regions from SNP 169427 to 170027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,291 DEBUG Processing 295/600 atomic regions from SNP 88468 to 89068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,299 DEBUG Processing 403/664 atomic regions from SNP 120738 to 121338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,370 DEBUG Processing 721/721 atomic regions from SNP 216241 to 216841 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,380 DEBUG Processing 28/534 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,422 DEBUG Processing 323/563 atomic regions from SNP 96655 to 97255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,512 DEBUG Processing 566/680 atomic regions from SNP 169727 to 170327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,514 DEBUG Processing 296/600 atomic regions from SNP 88768 to 89368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,524 DEBUG Unique SNPs positions in subchromosome 1: 216842 2025-01-31 09:55:32,540 DEBUG Processing 404/664 atomic regions from SNP 121038 to 121638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,602 DEBUG Processing 29/534 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,649 DEBUG Processing 324/563 atomic regions from SNP 96955 to 97555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,744 DEBUG Processing 297/600 atomic regions from SNP 89068 to 89668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,789 DEBUG Processing 567/680 atomic regions from SNP 170027 to 170627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,806 DEBUG Processing 405/664 atomic regions from SNP 121338 to 121938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,827 DEBUG Processing 30/534 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,869 DEBUG Processing 325/563 atomic regions from SNP 97255 to 97855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:32,979 DEBUG Processing 298/600 atomic regions from SNP 89368 to 89968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,045 DEBUG Processing 568/680 atomic regions from SNP 170327 to 170927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,055 DEBUG Processing 31/534 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,089 DEBUG Processing 406/664 atomic regions from SNP 121638 to 122238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,098 DEBUG Processing 326/563 atomic regions from SNP 97555 to 98155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,233 DEBUG Processing 299/600 atomic regions from SNP 89668 to 90268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,298 DEBUG Processing 32/534 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,319 DEBUG Processing 569/680 atomic regions from SNP 170627 to 171227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,348 DEBUG Processing 327/563 atomic regions from SNP 97855 to 98455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,406 DEBUG Processing 407/664 atomic regions from SNP 121938 to 122538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,502 DEBUG Processing 300/600 atomic regions from SNP 89968 to 90568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,562 DEBUG Processing 33/534 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,628 DEBUG Processing 328/563 atomic regions from SNP 98155 to 98755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:33,628 DEBUG Processing 570/680 atomic regions from SNP 170927 to 171527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,743 DEBUG Processing 408/664 atomic regions from SNP 122238 to 122838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,841 DEBUG Processing 301/600 atomic regions from SNP 90268 to 90868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,953 DEBUG Processing 34/534 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,001 DEBUG Processing 329/563 atomic regions from SNP 98455 to 99055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,024 DEBUG Processing 571/680 atomic regions from SNP 171227 to 171827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,169 DEBUG Processing 409/664 atomic regions from SNP 122538 to 123138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,241 DEBUG Processing 302/600 atomic regions from SNP 90568 to 91168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,273 DEBUG Processing 35/534 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,304 DEBUG Processing 330/563 atomic regions from SNP 98755 to 99355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,343 DEBUG Processing 572/680 atomic regions from SNP 171527 to 172127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,444 DEBUG Processing 410/664 atomic regions from SNP 122838 to 123438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,475 DEBUG Processing 303/600 atomic regions from SNP 90868 to 91468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,494 DEBUG Processing 36/534 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,533 DEBUG Processing 331/563 atomic regions from SNP 99055 to 99655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,607 DEBUG Processing 573/680 atomic regions from SNP 171827 to 172427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,670 DEBUG Processing 411/664 atomic regions from SNP 123138 to 123738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,697 DEBUG Processing 304/600 atomic regions from SNP 91168 to 91768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,699 DEBUG Processing 37/534 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,748 DEBUG Processing 332/563 atomic regions from SNP 99355 to 99955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:34,840 DEBUG Processing 574/680 atomic regions from SNP 172127 to 172727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,897 DEBUG Processing 38/534 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,898 DEBUG Processing 412/664 atomic regions from SNP 123438 to 124038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,915 DEBUG Processing 305/600 atomic regions from SNP 91468 to 92068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,951 DEBUG Processing 333/563 atomic regions from SNP 99655 to 100255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,076 DEBUG Processing 575/680 atomic regions from SNP 172427 to 173027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,087 DEBUG Processing 39/534 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,134 DEBUG Processing 413/664 atomic regions from SNP 123738 to 124338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,136 DEBUG Processing 306/600 atomic regions from SNP 91768 to 92368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,147 DEBUG Processing 334/563 atomic regions from SNP 99955 to 100555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,284 DEBUG Processing 40/534 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,319 DEBUG Processing 576/680 atomic regions from SNP 172727 to 173327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,341 DEBUG Processing 335/563 atomic regions from SNP 100255 to 100855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,358 DEBUG Processing 307/600 atomic regions from SNP 92068 to 92668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,375 DEBUG Processing 414/664 atomic regions from SNP 124038 to 124638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,479 DEBUG Processing 41/534 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,541 DEBUG Processing 336/563 atomic regions from SNP 100555 to 101155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,560 DEBUG Processing 577/680 atomic regions from SNP 173027 to 173627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,582 DEBUG Processing 308/600 atomic regions from SNP 92368 to 92968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,618 DEBUG Processing 415/664 atomic regions from SNP 124338 to 124938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,677 DEBUG Processing 42/534 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,734 DEBUG Processing 337/563 atomic regions from SNP 100855 to 101455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:35,804 DEBUG Processing 578/680 atomic regions from SNP 173327 to 173927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,816 DEBUG Processing 309/600 atomic regions from SNP 92668 to 93268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,863 DEBUG Processing 416/664 atomic regions from SNP 124638 to 125238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,888 DEBUG Processing 43/534 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,945 DEBUG Processing 338/563 atomic regions from SNP 101155 to 101755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,036 DEBUG Processing 310/600 atomic regions from SNP 92968 to 93568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,037 DEBUG Processing 579/680 atomic regions from SNP 173627 to 174227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,093 DEBUG Processing 44/534 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,096 DEBUG Processing 417/664 atomic regions from SNP 124938 to 125538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,152 DEBUG Processing 339/563 atomic regions from SNP 101455 to 102055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,257 DEBUG Processing 311/600 atomic regions from SNP 93268 to 93868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,289 DEBUG Processing 580/680 atomic regions from SNP 173927 to 174527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,317 DEBUG Processing 45/534 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,349 DEBUG Processing 418/664 atomic regions from SNP 125238 to 125838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,374 DEBUG Processing 340/563 atomic regions from SNP 101755 to 102355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,492 DEBUG Processing 312/600 atomic regions from SNP 93568 to 94168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,527 DEBUG Processing 46/534 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,533 DEBUG Processing 581/680 atomic regions from SNP 174227 to 174827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,575 DEBUG Processing 341/563 atomic regions from SNP 102055 to 102655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,590 DEBUG Processing 419/664 atomic regions from SNP 125538 to 126138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,702 DEBUG Processing 313/600 atomic regions from SNP 93868 to 94468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,716 DEBUG Processing 47/534 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,763 DEBUG Processing 582/680 atomic regions from SNP 174527 to 175127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,776 DEBUG Processing 342/563 atomic regions from SNP 102355 to 102955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,820 DEBUG Processing 420/664 atomic regions from SNP 125838 to 126438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,902 DEBUG Processing 48/534 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,908 DEBUG Processing 314/600 atomic regions from SNP 94168 to 94768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,975 DEBUG Processing 343/563 atomic regions from SNP 102655 to 103255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:36,984 DEBUG Processing 583/680 atomic regions from SNP 174827 to 175427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,074 DEBUG Processing 421/664 atomic regions from SNP 126138 to 126738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,122 DEBUG Processing 49/534 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,132 DEBUG Processing 315/600 atomic regions from SNP 94468 to 95068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,188 DEBUG Processing 344/563 atomic regions from SNP 102955 to 103555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,219 DEBUG Processing 584/680 atomic regions from SNP 175127 to 175727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,318 DEBUG Processing 422/664 atomic regions from SNP 126438 to 127038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,334 DEBUG Processing 50/534 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,356 DEBUG Processing 316/600 atomic regions from SNP 94768 to 95368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,396 DEBUG Processing 345/563 atomic regions from SNP 103255 to 103855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,453 DEBUG Processing 585/680 atomic regions from SNP 175427 to 176027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,547 DEBUG Processing 51/534 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,571 DEBUG Processing 423/664 atomic regions from SNP 126738 to 127338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,582 DEBUG Processing 317/600 atomic regions from SNP 95068 to 95668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,613 DEBUG Processing 346/563 atomic regions from SNP 103555 to 104155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,705 DEBUG Processing 586/680 atomic regions from SNP 175727 to 176327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,774 DEBUG Processing 52/534 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,822 DEBUG Processing 318/600 atomic regions from SNP 95368 to 95968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,830 DEBUG Processing 347/563 atomic regions from SNP 103855 to 104455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:37,833 DEBUG Processing 424/664 atomic regions from SNP 127038 to 127638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,955 DEBUG Processing 587/680 atomic regions from SNP 176027 to 176627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,971 DEBUG Processing 53/534 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,037 DEBUG Processing 348/563 atomic regions from SNP 104155 to 104755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,057 DEBUG Processing 319/600 atomic regions from SNP 95668 to 96268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,076 DEBUG Processing 425/664 atomic regions from SNP 127338 to 127938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,168 DEBUG Processing 54/534 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,187 DEBUG Processing 588/680 atomic regions from SNP 176327 to 176927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,250 DEBUG Processing 349/563 atomic regions from SNP 104455 to 105055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,312 DEBUG Processing 320/600 atomic regions from SNP 95968 to 96568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,318 DEBUG Processing 426/664 atomic regions from SNP 127638 to 128238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,368 DEBUG Processing 55/534 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,438 DEBUG Processing 589/680 atomic regions from SNP 176627 to 177227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,462 DEBUG Processing 350/563 atomic regions from SNP 104755 to 105355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,572 DEBUG Processing 427/664 atomic regions from SNP 127938 to 128538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,583 DEBUG Processing 56/534 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,584 DEBUG Processing 321/600 atomic regions from SNP 96268 to 96868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,676 DEBUG Processing 351/563 atomic regions from SNP 105055 to 105655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,697 DEBUG Processing 590/680 atomic regions from SNP 176927 to 177527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,832 DEBUG Processing 57/534 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,865 DEBUG Processing 322/600 atomic regions from SNP 96568 to 97168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,872 DEBUG Processing 428/664 atomic regions from SNP 128238 to 128838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,902 DEBUG Processing 352/563 atomic regions from SNP 105355 to 105955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:38,982 DEBUG Processing 591/680 atomic regions from SNP 177227 to 177827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,050 DEBUG Processing 58/534 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,133 DEBUG Processing 353/563 atomic regions from SNP 105655 to 106255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,140 DEBUG Processing 323/600 atomic regions from SNP 96868 to 97468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,180 DEBUG Processing 429/664 atomic regions from SNP 128538 to 129138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,265 DEBUG Processing 592/680 atomic regions from SNP 177527 to 178127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,295 DEBUG Processing 59/534 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,384 DEBUG Processing 354/563 atomic regions from SNP 105955 to 106555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,421 DEBUG Processing 324/600 atomic regions from SNP 97168 to 97768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,463 DEBUG Processing 430/664 atomic regions from SNP 128838 to 129438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,538 DEBUG Processing 60/534 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,554 DEBUG Processing 593/680 atomic regions from SNP 177827 to 178427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,666 DEBUG Processing 355/563 atomic regions from SNP 106255 to 106855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,720 DEBUG Processing 325/600 atomic regions from SNP 97468 to 98068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,781 DEBUG Processing 431/664 atomic regions from SNP 129138 to 129738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,799 DEBUG Processing 61/534 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,863 DEBUG Processing 594/680 atomic regions from SNP 178127 to 178727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,894 DEBUG Processing 356/563 atomic regions from SNP 106555 to 107155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:39,946 DEBUG Processing 326/600 atomic regions from SNP 97768 to 98368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,988 DEBUG Processing 62/534 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,035 DEBUG Processing 432/664 atomic regions from SNP 129438 to 130038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,110 DEBUG Processing 357/563 atomic regions from SNP 106855 to 107455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,112 DEBUG Processing 595/680 atomic regions from SNP 178427 to 179027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,189 DEBUG Processing 63/534 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,210 DEBUG Processing 327/600 atomic regions from SNP 98068 to 98668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,298 DEBUG Processing 433/664 atomic regions from SNP 129738 to 130338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,314 DEBUG Processing 358/563 atomic regions from SNP 107155 to 107755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,360 DEBUG Processing 596/680 atomic regions from SNP 178727 to 179327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,390 DEBUG Processing 64/534 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,461 DEBUG Processing 328/600 atomic regions from SNP 98368 to 98968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,522 DEBUG Processing 359/563 atomic regions from SNP 107455 to 108055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,555 DEBUG Processing 434/664 atomic regions from SNP 130038 to 130638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,601 DEBUG Processing 65/534 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,618 DEBUG Processing 597/680 atomic regions from SNP 179027 to 179627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,700 DEBUG Processing 329/600 atomic regions from SNP 98668 to 99268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,713 DEBUG Processing 360/563 atomic regions from SNP 107755 to 108355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,795 DEBUG Processing 435/664 atomic regions from SNP 130338 to 130938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,807 DEBUG Processing 66/534 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,873 DEBUG Processing 598/680 atomic regions from SNP 179327 to 179927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,918 DEBUG Processing 361/563 atomic regions from SNP 108055 to 108655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:40,940 DEBUG Processing 330/600 atomic regions from SNP 98968 to 99568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,012 DEBUG Processing 67/534 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,040 DEBUG Processing 436/664 atomic regions from SNP 130638 to 131238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,152 DEBUG Processing 599/680 atomic regions from SNP 179627 to 180227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,161 DEBUG Processing 362/563 atomic regions from SNP 108355 to 108955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,217 DEBUG Processing 331/600 atomic regions from SNP 99268 to 99868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,254 DEBUG Processing 68/534 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,320 DEBUG Processing 437/664 atomic regions from SNP 130938 to 131538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,410 DEBUG Processing 363/563 atomic regions from SNP 108655 to 109255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,439 DEBUG Processing 600/680 atomic regions from SNP 179927 to 180527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,470 DEBUG Processing 332/600 atomic regions from SNP 99568 to 100168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,477 DEBUG Processing 69/534 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,556 DEBUG Processing 438/664 atomic regions from SNP 131238 to 131838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,614 DEBUG Processing 364/563 atomic regions from SNP 108955 to 109555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,700 DEBUG Processing 601/680 atomic regions from SNP 180227 to 180827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,714 DEBUG Processing 70/534 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,725 DEBUG Processing 333/600 atomic regions from SNP 99868 to 100468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,812 DEBUG Processing 439/664 atomic regions from SNP 131538 to 132138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,820 DEBUG Processing 365/563 atomic regions from SNP 109255 to 109855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:41,958 DEBUG Processing 71/534 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,987 DEBUG Processing 602/680 atomic regions from SNP 180527 to 181127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,999 DEBUG Processing 334/600 atomic regions from SNP 100168 to 100768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,059 DEBUG Processing 366/563 atomic regions from SNP 109555 to 110155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,078 DEBUG Processing 440/664 atomic regions from SNP 131838 to 132438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,168 DEBUG Processing 72/534 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,272 DEBUG Processing 603/680 atomic regions from SNP 180827 to 181427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,283 DEBUG Processing 335/600 atomic regions from SNP 100468 to 101068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,359 DEBUG Processing 367/563 atomic regions from SNP 109855 to 110455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,400 DEBUG Processing 441/664 atomic regions from SNP 132138 to 132738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,431 DEBUG Processing 73/534 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,531 DEBUG Processing 604/680 atomic regions from SNP 181127 to 181727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,540 DEBUG Processing 336/600 atomic regions from SNP 100768 to 101368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,612 DEBUG Processing 368/563 atomic regions from SNP 110155 to 110755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,685 DEBUG Processing 74/534 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,700 DEBUG Processing 442/664 atomic regions from SNP 132438 to 133038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,810 DEBUG Processing 337/600 atomic regions from SNP 101068 to 101668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,823 DEBUG Processing 605/680 atomic regions from SNP 181427 to 182027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,860 DEBUG Processing 369/563 atomic regions from SNP 110455 to 111055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:42,943 DEBUG Processing 75/534 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,000 DEBUG Processing 443/664 atomic regions from SNP 132738 to 133338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,102 DEBUG Processing 338/600 atomic regions from SNP 101368 to 101968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,123 DEBUG Processing 606/680 atomic regions from SNP 181727 to 182327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,124 DEBUG Processing 370/563 atomic regions from SNP 110755 to 111355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,210 DEBUG Processing 76/534 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,309 DEBUG Processing 444/664 atomic regions from SNP 133038 to 133638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,401 DEBUG Processing 339/600 atomic regions from SNP 101668 to 102268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,433 DEBUG Processing 371/563 atomic regions from SNP 111055 to 111655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,456 DEBUG Processing 607/680 atomic regions from SNP 182027 to 182627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,497 DEBUG Processing 77/534 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,582 DEBUG Processing 445/664 atomic regions from SNP 133338 to 133938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,668 DEBUG Processing 340/600 atomic regions from SNP 101968 to 102568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,688 DEBUG Processing 372/563 atomic regions from SNP 111355 to 111955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,766 DEBUG Processing 78/534 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,776 DEBUG Processing 608/680 atomic regions from SNP 182327 to 182927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,872 DEBUG Processing 446/664 atomic regions from SNP 133638 to 134238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,898 DEBUG Processing 373/563 atomic regions from SNP 111655 to 112255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:43,904 DEBUG Processing 341/600 atomic regions from SNP 102268 to 102868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,000 DEBUG Processing 79/534 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,038 DEBUG Processing 609/680 atomic regions from SNP 182627 to 183227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,201 DEBUG Processing 374/563 atomic regions from SNP 111955 to 112555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,207 DEBUG Processing 447/664 atomic regions from SNP 133938 to 134538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,207 DEBUG Processing 342/600 atomic regions from SNP 102568 to 103168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,250 DEBUG Processing 80/534 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,328 DEBUG Processing 610/680 atomic regions from SNP 182927 to 183527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,451 DEBUG Processing 375/563 atomic regions from SNP 112255 to 112855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,501 DEBUG Processing 343/600 atomic regions from SNP 102868 to 103468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,504 DEBUG Processing 81/534 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,519 DEBUG Processing 448/664 atomic regions from SNP 134238 to 134838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,609 DEBUG Processing 611/680 atomic regions from SNP 183227 to 183827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,684 DEBUG Processing 376/563 atomic regions from SNP 112555 to 113155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:44,745 DEBUG Processing 82/534 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,769 DEBUG Processing 344/600 atomic regions from SNP 103168 to 103768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,831 DEBUG Processing 449/664 atomic regions from SNP 134538 to 135138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,921 DEBUG Processing 612/680 atomic regions from SNP 183527 to 184127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,951 DEBUG Processing 377/563 atomic regions from SNP 112855 to 113455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,013 DEBUG Processing 83/534 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,057 DEBUG Processing 345/600 atomic regions from SNP 103468 to 104068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,170 DEBUG Processing 450/664 atomic regions from SNP 134838 to 135438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,211 DEBUG Processing 613/680 atomic regions from SNP 183827 to 184427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,212 DEBUG Processing 378/563 atomic regions from SNP 113155 to 113755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,243 DEBUG Processing 84/534 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,327 DEBUG Processing 346/600 atomic regions from SNP 103768 to 104368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,522 DEBUG Processing 379/563 atomic regions from SNP 113455 to 114055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,538 DEBUG Processing 451/664 atomic regions from SNP 135138 to 135738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,552 DEBUG Processing 85/534 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,565 DEBUG Processing 614/680 atomic regions from SNP 184127 to 184727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,604 DEBUG Processing 347/600 atomic regions from SNP 104068 to 104668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,800 DEBUG Processing 380/563 atomic regions from SNP 113755 to 114355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:45,848 DEBUG Processing 452/664 atomic regions from SNP 135438 to 136038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,851 DEBUG Processing 86/534 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,896 DEBUG Processing 615/680 atomic regions from SNP 184427 to 185027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,925 DEBUG Processing 348/600 atomic regions from SNP 104368 to 104968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,062 DEBUG Processing 381/563 atomic regions from SNP 114055 to 114655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,112 DEBUG Processing 87/534 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,137 DEBUG Processing 453/664 atomic regions from SNP 135738 to 136338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,208 DEBUG Processing 616/680 atomic regions from SNP 184727 to 185327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,229 DEBUG Processing 349/600 atomic regions from SNP 104668 to 105268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,329 DEBUG Processing 382/563 atomic regions from SNP 114355 to 114955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,348 DEBUG Processing 88/534 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,474 DEBUG Processing 454/664 atomic regions from SNP 136038 to 136638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,522 DEBUG Processing 617/680 atomic regions from SNP 185027 to 185627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,531 DEBUG Processing 350/600 atomic regions from SNP 104968 to 105568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,605 DEBUG Processing 89/534 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,608 DEBUG Processing 383/563 atomic regions from SNP 114655 to 115255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:46,797 DEBUG Processing 455/664 atomic regions from SNP 136338 to 136938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,805 DEBUG Processing 618/680 atomic regions from SNP 185327 to 185927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,810 DEBUG Processing 351/600 atomic regions from SNP 105268 to 105868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,875 DEBUG Processing 90/534 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,875 DEBUG Processing 384/563 atomic regions from SNP 114955 to 115555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,072 DEBUG Processing 619/680 atomic regions from SNP 185627 to 186227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,074 DEBUG Processing 352/600 atomic regions from SNP 105568 to 106168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,091 DEBUG Processing 456/664 atomic regions from SNP 136638 to 137238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,108 DEBUG Processing 91/534 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,114 DEBUG Processing 385/563 atomic regions from SNP 115255 to 115855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,351 DEBUG Processing 353/600 atomic regions from SNP 105868 to 106468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,352 DEBUG Processing 92/534 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,365 DEBUG Processing 386/563 atomic regions from SNP 115555 to 116155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,366 DEBUG Processing 620/680 atomic regions from SNP 185927 to 186527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,396 DEBUG Processing 457/664 atomic regions from SNP 136938 to 137538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,614 DEBUG Processing 93/534 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,627 DEBUG Processing 387/563 atomic regions from SNP 115855 to 116455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,632 DEBUG Processing 354/600 atomic regions from SNP 106168 to 106768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,668 DEBUG Processing 621/680 atomic regions from SNP 186227 to 186827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,701 DEBUG Processing 458/664 atomic regions from SNP 137238 to 137838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,879 DEBUG Subchromosome time: 207.12800545617938, subchromosome SNPs: 216842 2025-01-31 09:55:47,879 DEBUG Estimated BADs: [14.91, 2.98, 0.75, 0.25, 0.50, 1.49, 0.37, 1.49, 0.30, 0.75, 7.46, 1.49, 2.98, 1.49, 4.47, 1.49, 2.98, 1.49, 0.50, 2.98, 1.49, 0.50, 1.49, 2.98] SNP counts: [149, 6870, 9919, 5733, 4500, 10549, 7222, 14149, 6014, 15643, 193, 18304, 3399, 15358, 3053, 7565, 8972, 20892, 5995, 16778, 14380, 2712, 5589, 12904] SNP IDs counts: [149, 6870, 9919, 5733, 4500, 10549, 7222, 14149, 6014, 15643, 193, 18304, 3399, 15358, 3053, 7565, 8972, 20892, 5995, 16778, 14380, 2712, 5589, 12904] Critical gap: 586388bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.89Mbp, 12.60Mbp, 16.09Mbp, 18.72Mbp, 24.49Mbp, 28.74Mbp, 36.58Mbp, 39.89Mbp, 48.77Mbp, 48.88Mbp, 58.90Mbp, 60.77Mbp, 68.96Mbp, 70.56Mbp, 74.83Mbp, 79.57Mbp, 90.75Mbp, 94.13Mbp, 102.98Mbp, 110.67Mbp, 112.16Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:55:47,879 DEBUG chr11 time: 207.1285274028778 s 2025-01-31 09:55:47,880 DEBUG Processing 94/534 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,911 DEBUG Processing 388/563 atomic regions from SNP 116155 to 116755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:47,936 DEBUG Processing 355/600 atomic regions from SNP 106468 to 107068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,002 DEBUG Processing 622/680 atomic regions from SNP 186527 to 187127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,019 DEBUG Processing 459/664 atomic regions from SNP 137538 to 138138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,038 DEBUG chr11: Fitting background model for 24 segments 2025-01-31 09:55:48,121 DEBUG Processing 95/534 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,145 DEBUG Processing 389/563 atomic regions from SNP 116455 to 117055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,176 DEBUG Processing 356/600 atomic regions from SNP 106768 to 107368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,276 DEBUG Processing 623/680 atomic regions from SNP 186827 to 187427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,327 DEBUG Processing 460/664 atomic regions from SNP 137838 to 138438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,352 DEBUG Processing 96/534 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,361 DEBUG Processing 390/563 atomic regions from SNP 116755 to 117355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,437 DEBUG Processing 357/600 atomic regions from SNP 107068 to 107668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,589 DEBUG Processing 624/680 atomic regions from SNP 187127 to 187727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,651 DEBUG Processing 97/534 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,658 DEBUG Processing 391/563 atomic regions from SNP 117055 to 117655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,673 DEBUG Processing 461/664 atomic regions from SNP 138138 to 138738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,738 DEBUG Processing 358/600 atomic regions from SNP 107368 to 107968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,872 DEBUG Processing 625/680 atomic regions from SNP 187427 to 188027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,911 DEBUG Processing 98/534 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,922 DEBUG Processing 392/563 atomic regions from SNP 117355 to 117955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:48,992 DEBUG Processing 462/664 atomic regions from SNP 138438 to 139038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,033 DEBUG Processing 359/600 atomic regions from SNP 107668 to 108268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,190 DEBUG Processing 99/534 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,202 DEBUG Processing 626/680 atomic regions from SNP 187727 to 188327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,246 DEBUG Processing 393/563 atomic regions from SNP 117655 to 118255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,317 DEBUG Processing 463/664 atomic regions from SNP 138738 to 139338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,325 DEBUG Processing 360/600 atomic regions from SNP 107968 to 108568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,468 DEBUG Processing 100/534 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,513 DEBUG Processing 627/680 atomic regions from SNP 188027 to 188627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,528 DEBUG Processing 394/563 atomic regions from SNP 117955 to 118555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,591 DEBUG Processing 361/600 atomic regions from SNP 108268 to 108868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,609 DEBUG Processing 464/664 atomic regions from SNP 139038 to 139638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,727 DEBUG Processing 101/534 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,843 DEBUG Processing 628/680 atomic regions from SNP 188327 to 188927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,853 DEBUG Processing 395/563 atomic regions from SNP 118255 to 118855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:49,888 DEBUG Processing 362/600 atomic regions from SNP 108568 to 109168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,913 DEBUG Processing 465/664 atomic regions from SNP 139338 to 139938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,945 DEBUG Processing 102/534 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,145 DEBUG Processing 629/680 atomic regions from SNP 188627 to 189227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,152 DEBUG Processing 396/563 atomic regions from SNP 118555 to 119155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,188 DEBUG Processing 363/600 atomic regions from SNP 108868 to 109468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,202 DEBUG Processing 103/534 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,233 DEBUG Processing 466/664 atomic regions from SNP 139638 to 140238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,408 DEBUG Processing 397/563 atomic regions from SNP 118855 to 119455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,426 DEBUG Processing 630/680 atomic regions from SNP 188927 to 189527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,437 DEBUG Processing 104/534 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,442 DEBUG Processing 364/600 atomic regions from SNP 109168 to 109768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,497 DEBUG Processing 467/664 atomic regions from SNP 139938 to 140538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,628 DEBUG Processing 398/563 atomic regions from SNP 119155 to 119755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,658 DEBUG Processing 105/534 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,668 DEBUG Processing 631/680 atomic regions from SNP 189227 to 189827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,675 DEBUG Processing 365/600 atomic regions from SNP 109468 to 110068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,749 DEBUG Processing 468/664 atomic regions from SNP 140238 to 140838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,837 DEBUG Processing 399/563 atomic regions from SNP 119455 to 120055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:50,867 DEBUG Processing 106/534 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,895 DEBUG Processing 366/600 atomic regions from SNP 109768 to 110368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,916 DEBUG Processing 632/680 atomic regions from SNP 189527 to 190127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,992 DEBUG Processing 469/664 atomic regions from SNP 140538 to 141138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,048 DEBUG Processing 400/563 atomic regions from SNP 119755 to 120355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,078 DEBUG Processing 107/534 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,115 DEBUG Processing 367/600 atomic regions from SNP 110068 to 110668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,185 DEBUG Processing 633/680 atomic regions from SNP 189827 to 190427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,253 DEBUG Processing 470/664 atomic regions from SNP 140838 to 141438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,258 DEBUG Processing 401/563 atomic regions from SNP 120055 to 120655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,285 DEBUG Processing 108/534 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,332 DEBUG Processing 368/600 atomic regions from SNP 110368 to 110968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,456 DEBUG Processing 634/680 atomic regions from SNP 190127 to 190727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,474 DEBUG Processing 402/563 atomic regions from SNP 120355 to 120955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,497 DEBUG Processing 109/534 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,534 DEBUG Processing 471/664 atomic regions from SNP 141138 to 141738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,549 DEBUG Processing 369/600 atomic regions from SNP 110668 to 111268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,687 DEBUG Processing 403/563 atomic regions from SNP 120655 to 121255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,708 DEBUG Processing 635/680 atomic regions from SNP 190427 to 191027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,732 DEBUG Processing 110/534 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,772 DEBUG Processing 370/600 atomic regions from SNP 110968 to 111568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,806 DEBUG Processing 472/664 atomic regions from SNP 141438 to 142038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,902 DEBUG Processing 404/563 atomic regions from SNP 120955 to 121555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:51,963 DEBUG Processing 636/680 atomic regions from SNP 190727 to 191327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,973 DEBUG Processing 111/534 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,006 DEBUG Processing 371/600 atomic regions from SNP 111268 to 111868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,075 DEBUG Processing 473/664 atomic regions from SNP 141738 to 142338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,114 DEBUG Processing 405/563 atomic regions from SNP 121255 to 121855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,215 DEBUG Processing 112/534 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,230 DEBUG Processing 637/680 atomic regions from SNP 191027 to 191627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,249 DEBUG Processing 372/600 atomic regions from SNP 111568 to 112168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,327 DEBUG Processing 406/563 atomic regions from SNP 121555 to 122155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,331 DEBUG Processing 474/664 atomic regions from SNP 142038 to 142638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,466 DEBUG Processing 113/534 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,512 DEBUG Processing 373/600 atomic regions from SNP 111868 to 112468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,524 DEBUG Processing 638/680 atomic regions from SNP 191327 to 191927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,560 DEBUG Processing 407/563 atomic regions from SNP 121855 to 122455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,596 DEBUG Processing 475/664 atomic regions from SNP 142338 to 142938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,732 DEBUG Processing 114/534 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,807 DEBUG Processing 374/600 atomic regions from SNP 112168 to 112768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,821 DEBUG Processing 639/680 atomic regions from SNP 191627 to 192227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,826 DEBUG Processing 408/563 atomic regions from SNP 122155 to 122755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:52,890 DEBUG Processing 476/664 atomic regions from SNP 142638 to 143238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,005 DEBUG Processing 115/534 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,091 DEBUG Processing 409/563 atomic regions from SNP 122455 to 123055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,098 DEBUG Processing 375/600 atomic regions from SNP 112468 to 113068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,143 DEBUG Processing 640/680 atomic regions from SNP 191927 to 192527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,163 DEBUG Processing 477/664 atomic regions from SNP 142938 to 143538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,252 DEBUG Processing 116/534 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,379 DEBUG Processing 410/563 atomic regions from SNP 122755 to 123355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,408 DEBUG Processing 376/600 atomic regions from SNP 112768 to 113368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,450 DEBUG Processing 641/680 atomic regions from SNP 192227 to 192827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,452 DEBUG Processing 478/664 atomic regions from SNP 143238 to 143838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,538 DEBUG Processing 117/534 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,719 DEBUG Processing 411/563 atomic regions from SNP 123055 to 123655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:53,757 DEBUG Processing 377/600 atomic regions from SNP 113068 to 113668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,796 DEBUG Processing 479/664 atomic regions from SNP 143538 to 144138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,797 DEBUG Processing 642/680 atomic regions from SNP 192527 to 193127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,823 DEBUG Processing 118/534 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,008 DEBUG Processing 412/563 atomic regions from SNP 123355 to 123955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,078 DEBUG Processing 378/600 atomic regions from SNP 113368 to 113968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,116 DEBUG Processing 119/534 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,117 DEBUG Processing 480/664 atomic regions from SNP 143838 to 144438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,120 DEBUG Processing 643/680 atomic regions from SNP 192827 to 193427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,238 DEBUG Processing 413/563 atomic regions from SNP 123655 to 124255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,326 DEBUG Processing 379/600 atomic regions from SNP 113668 to 114268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,356 DEBUG Processing 120/534 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,390 DEBUG Processing 481/664 atomic regions from SNP 144138 to 144738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,394 DEBUG Processing 644/680 atomic regions from SNP 193127 to 193727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,446 DEBUG Processing 414/563 atomic regions from SNP 123955 to 124555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,559 DEBUG Processing 380/600 atomic regions from SNP 113968 to 114568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,585 DEBUG Processing 121/534 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,642 DEBUG Processing 482/664 atomic regions from SNP 144438 to 145038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,647 DEBUG Processing 645/680 atomic regions from SNP 193427 to 194027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,655 DEBUG Processing 415/563 atomic regions from SNP 124255 to 124855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,781 DEBUG Processing 381/600 atomic regions from SNP 114268 to 114868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,801 DEBUG Processing 122/534 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,863 DEBUG Processing 416/563 atomic regions from SNP 124555 to 125155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:54,891 DEBUG Processing 483/664 atomic regions from SNP 144738 to 145338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,909 DEBUG Processing 646/680 atomic regions from SNP 193727 to 194327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,996 DEBUG Processing 382/600 atomic regions from SNP 114568 to 115168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,024 DEBUG Processing 123/534 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,069 DEBUG Processing 417/563 atomic regions from SNP 124855 to 125455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,142 DEBUG Processing 484/664 atomic regions from SNP 145038 to 145638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,159 DEBUG Processing 647/680 atomic regions from SNP 194027 to 194627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,217 DEBUG Processing 383/600 atomic regions from SNP 114868 to 115468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,256 DEBUG Processing 124/534 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,272 DEBUG Processing 418/563 atomic regions from SNP 125155 to 125755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,391 DEBUG Processing 485/664 atomic regions from SNP 145338 to 145938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,414 DEBUG Processing 648/680 atomic regions from SNP 194327 to 194927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,445 DEBUG Processing 384/600 atomic regions from SNP 115168 to 115768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,480 DEBUG Processing 419/563 atomic regions from SNP 125455 to 126055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,497 DEBUG Processing 125/534 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,646 DEBUG Processing 486/664 atomic regions from SNP 145638 to 146238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,674 DEBUG Processing 649/680 atomic regions from SNP 194627 to 195227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,691 DEBUG Processing 385/600 atomic regions from SNP 115468 to 116068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,699 DEBUG Processing 420/563 atomic regions from SNP 125755 to 126355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,736 DEBUG Processing 126/534 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,896 DEBUG Processing 487/664 atomic regions from SNP 145938 to 146538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,914 DEBUG Processing 421/563 atomic regions from SNP 126055 to 126655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:55,930 DEBUG Processing 650/680 atomic regions from SNP 194927 to 195527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,932 DEBUG Processing 386/600 atomic regions from SNP 115768 to 116368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,970 DEBUG Processing 127/534 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,120 DEBUG Processing 422/563 atomic regions from SNP 126355 to 126955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,146 DEBUG Processing 488/664 atomic regions from SNP 146238 to 146838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,171 DEBUG Processing 387/600 atomic regions from SNP 116068 to 116668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,188 DEBUG Processing 651/680 atomic regions from SNP 195227 to 195827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,195 DEBUG Processing 128/534 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,323 DEBUG Processing 423/563 atomic regions from SNP 126655 to 127255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,401 DEBUG Processing 489/664 atomic regions from SNP 146538 to 147138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,419 DEBUG Processing 388/600 atomic regions from SNP 116368 to 116968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,433 DEBUG Processing 129/534 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,461 DEBUG Processing 652/680 atomic regions from SNP 195527 to 196127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,532 DEBUG Processing 424/563 atomic regions from SNP 126955 to 127555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,687 DEBUG Processing 389/600 atomic regions from SNP 116668 to 117268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,694 DEBUG Processing 130/534 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,694 DEBUG Processing 490/664 atomic regions from SNP 146838 to 147438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,739 DEBUG Processing 425/563 atomic regions from SNP 127255 to 127855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:56,754 DEBUG Processing 653/680 atomic regions from SNP 195827 to 196427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,926 DEBUG Processing 390/600 atomic regions from SNP 116968 to 117568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,929 DEBUG Processing 131/534 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,948 DEBUG Processing 491/664 atomic regions from SNP 147138 to 147738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,953 DEBUG Processing 426/563 atomic regions from SNP 127555 to 128155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,016 DEBUG Processing 654/680 atomic regions from SNP 196127 to 196727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,163 DEBUG Processing 391/600 atomic regions from SNP 117268 to 117868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,175 DEBUG Processing 427/563 atomic regions from SNP 127855 to 128455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,179 DEBUG Processing 132/534 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,200 DEBUG Processing 492/664 atomic regions from SNP 147438 to 148038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,269 DEBUG Processing 655/680 atomic regions from SNP 196427 to 197027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,385 DEBUG Processing 428/563 atomic regions from SNP 128155 to 128755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,391 DEBUG Processing 392/600 atomic regions from SNP 117568 to 118168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,422 DEBUG Processing 133/534 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,450 DEBUG Processing 493/664 atomic regions from SNP 147738 to 148338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,520 DEBUG Processing 656/680 atomic regions from SNP 196727 to 197327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,592 DEBUG Processing 429/563 atomic regions from SNP 128455 to 129055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,622 DEBUG Processing 393/600 atomic regions from SNP 117868 to 118468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,645 DEBUG Processing 134/534 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,701 DEBUG Processing 494/664 atomic regions from SNP 148038 to 148638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,769 DEBUG Processing 657/680 atomic regions from SNP 197027 to 197627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,793 DEBUG Processing 430/563 atomic regions from SNP 128755 to 129355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:57,856 DEBUG Processing 394/600 atomic regions from SNP 118168 to 118768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,876 DEBUG Processing 135/534 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,955 DEBUG Processing 495/664 atomic regions from SNP 148338 to 148938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,994 DEBUG Processing 431/563 atomic regions from SNP 129055 to 129655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,020 DEBUG Processing 658/680 atomic regions from SNP 197327 to 197927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,086 DEBUG Processing 395/600 atomic regions from SNP 118468 to 119068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,117 DEBUG Processing 136/534 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,210 DEBUG Processing 432/563 atomic regions from SNP 129355 to 129955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,216 DEBUG Processing 496/664 atomic regions from SNP 148638 to 149238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,273 DEBUG Processing 659/680 atomic regions from SNP 197627 to 198227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,318 DEBUG Processing 396/600 atomic regions from SNP 118768 to 119368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,341 DEBUG Processing 137/534 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,416 DEBUG Processing 433/563 atomic regions from SNP 129655 to 130255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,463 DEBUG Processing 497/664 atomic regions from SNP 148938 to 149538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,513 DEBUG Processing 660/680 atomic regions from SNP 197927 to 198527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,553 DEBUG Processing 397/600 atomic regions from SNP 119068 to 119668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,561 DEBUG Processing 138/534 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,619 DEBUG Processing 434/563 atomic regions from SNP 129955 to 130555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,705 DEBUG Processing 498/664 atomic regions from SNP 149238 to 149838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,761 DEBUG Processing 661/680 atomic regions from SNP 198227 to 198827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,787 DEBUG Processing 398/600 atomic regions from SNP 119368 to 119968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,789 DEBUG Processing 139/534 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,830 DEBUG Processing 435/563 atomic regions from SNP 130255 to 130855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:58,946 DEBUG Processing 499/664 atomic regions from SNP 149538 to 150138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,016 DEBUG Processing 662/680 atomic regions from SNP 198527 to 199127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,028 DEBUG Processing 399/600 atomic regions from SNP 119668 to 120268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,032 DEBUG Processing 140/534 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,046 DEBUG Processing 436/563 atomic regions from SNP 130555 to 131155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,194 DEBUG Processing 500/664 atomic regions from SNP 149838 to 150438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,274 DEBUG Processing 437/563 atomic regions from SNP 130855 to 131455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,276 DEBUG Processing 141/534 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,284 DEBUG Processing 663/680 atomic regions from SNP 198827 to 199427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,284 DEBUG Processing 400/600 atomic regions from SNP 119968 to 120568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,446 DEBUG Processing 501/664 atomic regions from SNP 150138 to 150738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,530 DEBUG Processing 438/563 atomic regions from SNP 131155 to 131755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,554 DEBUG Processing 142/534 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,577 DEBUG Processing 401/600 atomic regions from SNP 120268 to 120868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,591 DEBUG Processing 664/680 atomic regions from SNP 199127 to 199727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,720 DEBUG Processing 502/664 atomic regions from SNP 150438 to 151038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,784 DEBUG Processing 439/563 atomic regions from SNP 131455 to 132055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:59,844 DEBUG Processing 143/534 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,881 DEBUG Processing 402/600 atomic regions from SNP 120568 to 121168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,895 DEBUG Processing 665/680 atomic regions from SNP 199427 to 200027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,025 DEBUG Processing 503/664 atomic regions from SNP 150738 to 151338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,051 DEBUG Processing 440/563 atomic regions from SNP 131755 to 132355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,138 DEBUG Processing 144/534 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,148 DEBUG Processing 403/600 atomic regions from SNP 120868 to 121468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,171 DEBUG Processing 666/680 atomic regions from SNP 199727 to 200327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,255 DEBUG Processing 441/563 atomic regions from SNP 132055 to 132655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,274 DEBUG Processing 504/664 atomic regions from SNP 151038 to 151638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,371 DEBUG Processing 145/534 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,380 DEBUG Processing 404/600 atomic regions from SNP 121168 to 121768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,427 DEBUG Processing 667/680 atomic regions from SNP 200027 to 200627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,465 DEBUG Processing 442/563 atomic regions from SNP 132355 to 132955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,529 DEBUG Processing 505/664 atomic regions from SNP 151338 to 151938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,598 DEBUG Processing 146/534 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,620 DEBUG Processing 405/600 atomic regions from SNP 121468 to 122068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,675 DEBUG Processing 443/563 atomic regions from SNP 132655 to 133255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,678 DEBUG Processing 668/680 atomic regions from SNP 200327 to 200927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,783 DEBUG Processing 506/664 atomic regions from SNP 151638 to 152238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,837 DEBUG Processing 147/534 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,867 DEBUG Processing 406/600 atomic regions from SNP 121768 to 122368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,893 DEBUG Processing 444/563 atomic regions from SNP 132955 to 133555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,930 DEBUG Processing 669/680 atomic regions from SNP 200627 to 201227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,032 DEBUG Processing 507/664 atomic regions from SNP 151938 to 152538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,072 DEBUG Processing 148/534 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,112 DEBUG Processing 407/600 atomic regions from SNP 122068 to 122668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,115 DEBUG Processing 445/563 atomic regions from SNP 133255 to 133855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,181 DEBUG Processing 670/680 atomic regions from SNP 200927 to 201527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,282 DEBUG Processing 508/664 atomic regions from SNP 152238 to 152838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,299 DEBUG Processing 149/534 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,334 DEBUG Processing 446/563 atomic regions from SNP 133555 to 134155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,360 DEBUG Processing 408/600 atomic regions from SNP 122368 to 122968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,432 DEBUG Processing 671/680 atomic regions from SNP 201227 to 201827 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,532 DEBUG Processing 150/534 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,543 DEBUG Processing 509/664 atomic regions from SNP 152538 to 153138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,579 DEBUG Processing 447/563 atomic regions from SNP 133855 to 134455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,631 DEBUG Processing 409/600 atomic regions from SNP 122668 to 123268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,690 DEBUG Processing 672/680 atomic regions from SNP 201527 to 202127 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,791 DEBUG Processing 151/534 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,820 DEBUG Processing 448/563 atomic regions from SNP 134155 to 134755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,832 DEBUG Processing 510/664 atomic regions from SNP 152838 to 153438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,943 DEBUG Processing 410/600 atomic regions from SNP 122968 to 123568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,002 DEBUG Processing 673/680 atomic regions from SNP 201827 to 202427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,062 DEBUG Processing 152/534 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,118 DEBUG Processing 449/563 atomic regions from SNP 134455 to 135055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,175 DEBUG Processing 511/664 atomic regions from SNP 153138 to 153738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,311 DEBUG Processing 411/600 atomic regions from SNP 123268 to 123868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,359 DEBUG Processing 674/680 atomic regions from SNP 202127 to 202727 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,374 DEBUG Processing 153/534 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,438 DEBUG Processing 450/563 atomic regions from SNP 134755 to 135355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,509 DEBUG Processing 512/664 atomic regions from SNP 153438 to 154038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,690 DEBUG Processing 412/600 atomic regions from SNP 123568 to 124168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,699 DEBUG Processing 154/534 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,721 DEBUG Processing 675/680 atomic regions from SNP 202427 to 203027 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,781 DEBUG Processing 451/563 atomic regions from SNP 135055 to 135655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,863 DEBUG Processing 513/664 atomic regions from SNP 153738 to 154338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,067 DEBUG Processing 155/534 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,088 DEBUG Processing 413/600 atomic regions from SNP 123868 to 124468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,130 DEBUG Processing 676/680 atomic regions from SNP 202727 to 203327 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,149 DEBUG Processing 452/563 atomic regions from SNP 135355 to 135955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,266 DEBUG Processing 514/664 atomic regions from SNP 154038 to 154638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,432 DEBUG Processing 156/534 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,494 DEBUG Processing 414/600 atomic regions from SNP 124168 to 124768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,512 DEBUG Processing 453/563 atomic regions from SNP 135655 to 136255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,536 DEBUG Processing 677/680 atomic regions from SNP 203027 to 203627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,640 DEBUG Processing 515/664 atomic regions from SNP 154338 to 154938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,806 DEBUG Processing 157/534 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,869 DEBUG Processing 454/563 atomic regions from SNP 135955 to 136555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,900 DEBUG Processing 415/600 atomic regions from SNP 124468 to 125068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,932 DEBUG Processing 678/680 atomic regions from SNP 203327 to 203927 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,025 DEBUG Processing 516/664 atomic regions from SNP 154638 to 155238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,190 DEBUG Processing 158/534 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,246 DEBUG Processing 455/563 atomic regions from SNP 136255 to 136855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,306 DEBUG Processing 416/600 atomic regions from SNP 124768 to 125368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,341 DEBUG Processing 679/680 atomic regions from SNP 203627 to 204227 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,419 DEBUG Processing 517/664 atomic regions from SNP 154938 to 155538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,555 DEBUG Processing 159/534 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,605 DEBUG Processing 456/563 atomic regions from SNP 136555 to 137155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,686 DEBUG Processing 417/600 atomic regions from SNP 125068 to 125668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,763 DEBUG Processing 680/680 atomic regions from SNP 203927 to 204527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,819 DEBUG Processing 518/664 atomic regions from SNP 155238 to 155838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,951 DEBUG Processing 160/534 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,974 DEBUG Processing 457/563 atomic regions from SNP 136855 to 137455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,052 DEBUG Processing 418/600 atomic regions from SNP 125368 to 125968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,070 DEBUG Unique SNPs positions in subchromosome 1: 204528 2025-01-31 09:56:05,197 DEBUG Processing 519/664 atomic regions from SNP 155538 to 156138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,240 DEBUG Processing 458/563 atomic regions from SNP 137155 to 137755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,240 DEBUG Processing 161/534 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,332 DEBUG Processing 419/600 atomic regions from SNP 125668 to 126268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,568 DEBUG Processing 520/664 atomic regions from SNP 155838 to 156438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,575 DEBUG Processing 459/563 atomic regions from SNP 137455 to 138055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,586 DEBUG Processing 162/534 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,640 DEBUG Processing 420/600 atomic regions from SNP 125968 to 126568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,931 DEBUG Processing 460/563 atomic regions from SNP 137755 to 138355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,949 DEBUG Processing 521/664 atomic regions from SNP 156138 to 156738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,969 DEBUG Processing 163/534 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,026 DEBUG Processing 421/600 atomic regions from SNP 126268 to 126868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,288 DEBUG Processing 461/563 atomic regions from SNP 138055 to 138655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,343 DEBUG Processing 522/664 atomic regions from SNP 156438 to 157038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,359 DEBUG Processing 164/534 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,417 DEBUG Processing 422/600 atomic regions from SNP 126568 to 127168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,647 DEBUG Processing 462/563 atomic regions from SNP 138355 to 138955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,733 DEBUG Processing 165/534 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,734 DEBUG Processing 523/664 atomic regions from SNP 156738 to 157338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,823 DEBUG Processing 423/600 atomic regions from SNP 126868 to 127468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,986 DEBUG Processing 463/563 atomic regions from SNP 138655 to 139255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,098 DEBUG Processing 166/534 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,098 DEBUG Processing 524/664 atomic regions from SNP 157038 to 157638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,192 DEBUG Processing 424/600 atomic regions from SNP 127168 to 127768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,292 DEBUG Processing 464/563 atomic regions from SNP 138955 to 139555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,373 DEBUG Processing 167/534 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,379 DEBUG Processing 525/664 atomic regions from SNP 157338 to 157938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,487 DEBUG Processing 425/600 atomic regions from SNP 127468 to 128068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,599 DEBUG Processing 465/563 atomic regions from SNP 139255 to 139855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,654 DEBUG Processing 168/534 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,699 DEBUG Processing 526/664 atomic regions from SNP 157638 to 158238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,794 DEBUG Processing 426/600 atomic regions from SNP 127768 to 128368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,930 DEBUG Processing 466/563 atomic regions from SNP 139555 to 140155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,975 DEBUG Processing 169/534 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,090 DEBUG Processing 527/664 atomic regions from SNP 157938 to 158538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,194 DEBUG Processing 427/600 atomic regions from SNP 128068 to 128668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,317 DEBUG Processing 467/563 atomic regions from SNP 139855 to 140455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,355 DEBUG Processing 170/534 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,515 DEBUG Processing 528/664 atomic regions from SNP 158238 to 158838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,642 DEBUG Processing 428/600 atomic regions from SNP 128368 to 128968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,735 DEBUG Processing 468/563 atomic regions from SNP 140155 to 140755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,750 DEBUG Processing 171/534 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,939 DEBUG Processing 529/664 atomic regions from SNP 158538 to 159138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,082 DEBUG Processing 429/600 atomic regions from SNP 128668 to 129268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,134 DEBUG Processing 469/563 atomic regions from SNP 140455 to 141055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,145 DEBUG Processing 172/534 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,320 DEBUG Processing 530/664 atomic regions from SNP 158838 to 159438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,420 DEBUG Processing 430/600 atomic regions from SNP 128968 to 129568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,435 DEBUG Processing 470/563 atomic regions from SNP 140755 to 141355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,454 DEBUG Processing 173/534 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,609 DEBUG Subchromosome time: 195.263124383986, subchromosome SNPs: 204528 2025-01-31 09:56:09,610 DEBUG Estimated BADs: [1.47, 0.74, 1.47, 2.95, 8.84, 0.74, 14.73, 1.47, 0.37, 1.47, 2.95, 1.47, 4.42, 1.47, 0.74, 8.84, 0.49, 1.47, 0.49, 1.47, 2.95, 1.47, 0.74, 2.95] SNP counts: [2497, 7253, 21198, 1003, 557, 1959, 687, 4071, 3004, 38269, 22721, 17810, 1396, 5701, 1524, 101, 4602, 5098, 10377, 13122, 6876, 26698, 7458, 546] SNP IDs counts: [2497, 7253, 21198, 1003, 557, 1959, 687, 4071, 3004, 38269, 22721, 17810, 1396, 5701, 1524, 101, 4602, 5098, 10377, 13122, 6876, 26698, 7458, 546] Critical gap: 595810bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.53Mbp, 8.74Mbp, 21.16Mbp, 21.71Mbp, 22.05Mbp, 23.40Mbp, 23.77Mbp, 25.99Mbp, 27.74Mbp, 48.65Mbp, 61.17Mbp, 73.23Mbp, 73.96Mbp, 77.22Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 83.73Mbp, 89.81Mbp, 96.96Mbp, 100.70Mbp, 115.32Mbp, 119.69Mbp, 120.42Mbp] 2025-01-31 09:56:09,610 DEBUG chr13 time: 195.26363553106785 s 2025-01-31 09:56:09,635 DEBUG Processing 531/664 atomic regions from SNP 159138 to 159738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,737 DEBUG Processing 471/563 atomic regions from SNP 141055 to 141655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,778 DEBUG Processing 174/534 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,783 DEBUG Processing 431/600 atomic regions from SNP 129268 to 129868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,813 DEBUG chr13: Fitting background model for 24 segments 2025-01-31 09:56:09,971 DEBUG Processing 532/664 atomic regions from SNP 159438 to 160038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,076 DEBUG Processing 472/563 atomic regions from SNP 141355 to 141955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,151 DEBUG Processing 175/534 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,160 DEBUG Processing 432/600 atomic regions from SNP 129568 to 130168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,326 DEBUG Processing 533/664 atomic regions from SNP 159738 to 160338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,392 DEBUG Processing 473/563 atomic regions from SNP 141655 to 142255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,535 DEBUG Processing 176/534 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,553 DEBUG Processing 433/600 atomic regions from SNP 129868 to 130468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,695 DEBUG Processing 534/664 atomic regions from SNP 160038 to 160638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,715 DEBUG Processing 474/563 atomic regions from SNP 141955 to 142555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,874 DEBUG Processing 177/534 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,950 DEBUG Processing 434/600 atomic regions from SNP 130168 to 130768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,052 DEBUG Processing 475/563 atomic regions from SNP 142255 to 142855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,066 DEBUG Processing 535/664 atomic regions from SNP 160338 to 160938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,176 DEBUG Processing 178/534 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,326 DEBUG Processing 435/600 atomic regions from SNP 130468 to 131068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,354 DEBUG Processing 476/563 atomic regions from SNP 142555 to 143155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,376 DEBUG Processing 536/664 atomic regions from SNP 160638 to 161238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,518 DEBUG Processing 179/534 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,705 DEBUG Processing 477/563 atomic regions from SNP 142855 to 143455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,709 DEBUG Processing 436/600 atomic regions from SNP 130768 to 131368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,718 DEBUG Processing 537/664 atomic regions from SNP 160938 to 161538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,882 DEBUG Processing 180/534 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,074 DEBUG Processing 478/563 atomic regions from SNP 143155 to 143755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,110 DEBUG Processing 538/664 atomic regions from SNP 161238 to 161838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,118 DEBUG Processing 437/600 atomic regions from SNP 131068 to 131668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,258 DEBUG Processing 181/534 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,413 DEBUG Processing 479/563 atomic regions from SNP 143455 to 144055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,472 DEBUG Processing 539/664 atomic regions from SNP 161538 to 162138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,479 DEBUG Processing 438/600 atomic regions from SNP 131368 to 131968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,590 DEBUG Processing 182/534 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,736 DEBUG Processing 480/563 atomic regions from SNP 143755 to 144355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,835 DEBUG Processing 540/664 atomic regions from SNP 161838 to 162438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,847 DEBUG Processing 439/600 atomic regions from SNP 131668 to 132268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,928 DEBUG Processing 183/534 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,071 DEBUG Processing 481/563 atomic regions from SNP 144055 to 144655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,229 DEBUG Processing 541/664 atomic regions from SNP 162138 to 162738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,252 DEBUG Processing 440/600 atomic regions from SNP 131968 to 132568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,259 DEBUG Processing 184/534 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,397 DEBUG Processing 482/563 atomic regions from SNP 144355 to 144955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,594 DEBUG Processing 185/534 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,604 DEBUG Processing 542/664 atomic regions from SNP 162438 to 163038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,617 DEBUG Processing 441/600 atomic regions from SNP 132268 to 132868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,724 DEBUG Processing 483/563 atomic regions from SNP 144655 to 145255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,982 DEBUG Processing 543/664 atomic regions from SNP 162738 to 163338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,986 DEBUG Processing 186/534 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,017 DEBUG Processing 442/600 atomic regions from SNP 132568 to 133168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,069 DEBUG Processing 484/563 atomic regions from SNP 144955 to 145555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,366 DEBUG Processing 544/664 atomic regions from SNP 163038 to 163638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,374 DEBUG Processing 187/534 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,415 DEBUG Processing 485/563 atomic regions from SNP 145255 to 145855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,419 DEBUG Processing 443/600 atomic regions from SNP 132868 to 133468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,755 DEBUG Processing 545/664 atomic regions from SNP 163338 to 163938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,783 DEBUG Processing 188/534 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,814 DEBUG Processing 486/563 atomic regions from SNP 145555 to 146155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,855 DEBUG Processing 444/600 atomic regions from SNP 133168 to 133768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,143 DEBUG Processing 189/534 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,147 DEBUG Processing 546/664 atomic regions from SNP 163638 to 164238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,172 DEBUG Processing 487/563 atomic regions from SNP 145855 to 146455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,250 DEBUG Processing 445/600 atomic regions from SNP 133468 to 134068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,471 DEBUG Processing 488/563 atomic regions from SNP 146155 to 146755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,474 DEBUG Processing 190/534 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,519 DEBUG Processing 547/664 atomic regions from SNP 163938 to 164538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,590 DEBUG Processing 446/600 atomic regions from SNP 133768 to 134368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,693 DEBUG Processing 489/563 atomic regions from SNP 146455 to 147055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,695 DEBUG Processing 191/534 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,790 DEBUG Processing 548/664 atomic regions from SNP 164238 to 164838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,887 DEBUG Processing 447/600 atomic regions from SNP 134068 to 134668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,965 DEBUG Processing 192/534 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,968 DEBUG Processing 490/563 atomic regions from SNP 146755 to 147355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,092 DEBUG Processing 549/664 atomic regions from SNP 164538 to 165138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,189 DEBUG Processing 448/600 atomic regions from SNP 134368 to 134968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,233 DEBUG Processing 193/534 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,241 DEBUG Processing 491/563 atomic regions from SNP 147055 to 147655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,418 DEBUG Processing 550/664 atomic regions from SNP 164838 to 165438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,491 DEBUG Processing 194/534 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,525 DEBUG Processing 449/600 atomic regions from SNP 134668 to 135268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,543 DEBUG Processing 492/563 atomic regions from SNP 147355 to 147955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,763 DEBUG Processing 551/664 atomic regions from SNP 165138 to 165738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,775 DEBUG Processing 195/534 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,827 DEBUG Processing 493/563 atomic regions from SNP 147655 to 148255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,881 DEBUG Processing 450/600 atomic regions from SNP 134968 to 135568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,069 DEBUG Processing 196/534 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,103 DEBUG Processing 552/664 atomic regions from SNP 165438 to 166038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,117 DEBUG Processing 494/563 atomic regions from SNP 147955 to 148555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,227 DEBUG Processing 451/600 atomic regions from SNP 135268 to 135868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,388 DEBUG Processing 197/534 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,449 DEBUG Processing 495/563 atomic regions from SNP 148255 to 148855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,456 DEBUG Processing 553/664 atomic regions from SNP 165738 to 166338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,617 DEBUG Processing 452/600 atomic regions from SNP 135568 to 136168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,718 DEBUG Processing 198/534 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,793 DEBUG Processing 496/563 atomic regions from SNP 148555 to 149155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,837 DEBUG Processing 554/664 atomic regions from SNP 166038 to 166638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,990 DEBUG Processing 453/600 atomic regions from SNP 135868 to 136468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,022 DEBUG Processing 199/534 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,106 DEBUG Processing 497/563 atomic regions from SNP 148855 to 149455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,187 DEBUG Processing 555/664 atomic regions from SNP 166338 to 166938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,310 DEBUG Processing 200/534 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,366 DEBUG Processing 454/600 atomic regions from SNP 136168 to 136768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,482 DEBUG Processing 498/563 atomic regions from SNP 149155 to 149755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,555 DEBUG Processing 556/664 atomic regions from SNP 166638 to 167238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,591 DEBUG Processing 201/534 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,696 DEBUG Processing 455/600 atomic regions from SNP 136468 to 137068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,726 DEBUG Processing 499/563 atomic regions from SNP 149455 to 150055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,839 DEBUG Processing 557/664 atomic regions from SNP 166938 to 167538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,861 DEBUG Processing 202/534 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,016 DEBUG Processing 500/563 atomic regions from SNP 149755 to 150355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,022 DEBUG Processing 456/600 atomic regions from SNP 136768 to 137368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,143 DEBUG Processing 558/664 atomic regions from SNP 167238 to 167838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,146 DEBUG Processing 203/534 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,330 DEBUG Processing 501/563 atomic regions from SNP 150055 to 150655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,349 DEBUG Processing 457/600 atomic regions from SNP 137068 to 137668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,489 DEBUG Processing 204/534 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,511 DEBUG Processing 559/664 atomic regions from SNP 167538 to 168138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,643 DEBUG Processing 502/563 atomic regions from SNP 150355 to 150955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,702 DEBUG Processing 458/600 atomic regions from SNP 137368 to 137968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,792 DEBUG Processing 205/534 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,848 DEBUG Processing 560/664 atomic regions from SNP 167838 to 168438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,944 DEBUG Processing 503/563 atomic regions from SNP 150655 to 151255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,052 DEBUG Processing 459/600 atomic regions from SNP 137668 to 138268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,107 DEBUG Processing 206/534 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,197 DEBUG Processing 561/664 atomic regions from SNP 168138 to 168738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,252 DEBUG Processing 504/563 atomic regions from SNP 150955 to 151555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,381 DEBUG Processing 460/600 atomic regions from SNP 137968 to 138568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,410 DEBUG Processing 207/534 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,528 DEBUG Processing 562/664 atomic regions from SNP 168438 to 169038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,543 DEBUG Processing 505/563 atomic regions from SNP 151255 to 151855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,701 DEBUG Processing 461/600 atomic regions from SNP 138268 to 138868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,703 DEBUG Processing 208/534 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,834 DEBUG Processing 506/563 atomic regions from SNP 151555 to 152155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,871 DEBUG Processing 563/664 atomic regions from SNP 168738 to 169338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,026 DEBUG Processing 209/534 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,049 DEBUG Processing 462/600 atomic regions from SNP 138568 to 139168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,153 DEBUG Processing 507/563 atomic regions from SNP 151855 to 152455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,212 DEBUG Processing 564/664 atomic regions from SNP 169038 to 169638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,329 DEBUG Processing 210/534 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,406 DEBUG Processing 463/600 atomic regions from SNP 138868 to 139468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,456 DEBUG Processing 508/563 atomic regions from SNP 152155 to 152755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,553 DEBUG Processing 565/664 atomic regions from SNP 169338 to 169938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,643 DEBUG Processing 211/534 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,756 DEBUG Processing 464/600 atomic regions from SNP 139168 to 139768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,777 DEBUG Processing 509/563 atomic regions from SNP 152455 to 153055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,919 DEBUG Processing 566/664 atomic regions from SNP 169638 to 170238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,950 DEBUG Processing 212/534 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,086 DEBUG Processing 510/563 atomic regions from SNP 152755 to 153355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,110 DEBUG Processing 465/600 atomic regions from SNP 139468 to 140068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,299 DEBUG Processing 567/664 atomic regions from SNP 169938 to 170538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,303 DEBUG Processing 213/534 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,438 DEBUG Processing 511/563 atomic regions from SNP 153055 to 153655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,487 DEBUG Processing 466/600 atomic regions from SNP 139768 to 140368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,630 DEBUG Processing 214/534 atomic regions from SNP 64113 to 64714 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,645 DEBUG Processing 568/664 atomic regions from SNP 170238 to 170838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,761 DEBUG Processing 512/563 atomic regions from SNP 153355 to 153955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,864 DEBUG Processing 467/600 atomic regions from SNP 140068 to 140668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,945 DEBUG Processing 215/534 atomic regions from SNP 64414 to 65015 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,990 DEBUG Processing 569/664 atomic regions from SNP 170538 to 171138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,107 DEBUG Processing 513/563 atomic regions from SNP 153655 to 154255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,235 DEBUG Processing 468/600 atomic regions from SNP 140368 to 140968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,266 DEBUG Processing 216/534 atomic regions from SNP 64715 to 65316 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,336 DEBUG Processing 570/664 atomic regions from SNP 170838 to 171438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,461 DEBUG Processing 514/563 atomic regions from SNP 153955 to 154555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,600 DEBUG Processing 217/534 atomic regions from SNP 65016 to 65617 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,623 DEBUG Processing 469/600 atomic regions from SNP 140668 to 141268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,687 DEBUG Processing 571/664 atomic regions from SNP 171138 to 171738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,835 DEBUG Processing 515/563 atomic regions from SNP 154255 to 154855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,935 DEBUG Processing 218/534 atomic regions from SNP 65317 to 65918 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,972 DEBUG Processing 470/600 atomic regions from SNP 140968 to 141568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,035 DEBUG Processing 572/664 atomic regions from SNP 171438 to 172038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,186 DEBUG Processing 516/563 atomic regions from SNP 154555 to 155155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,245 DEBUG Processing 219/534 atomic regions from SNP 65618 to 66219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,309 DEBUG Processing 471/600 atomic regions from SNP 141268 to 141868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,377 DEBUG Processing 573/664 atomic regions from SNP 171738 to 172338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,521 DEBUG Processing 517/563 atomic regions from SNP 154855 to 155455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,557 DEBUG Processing 220/534 atomic regions from SNP 65919 to 66520 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,675 DEBUG Processing 472/600 atomic regions from SNP 141568 to 142168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,730 DEBUG Processing 574/664 atomic regions from SNP 172038 to 172638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,860 DEBUG Processing 221/534 atomic regions from SNP 66220 to 66821 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,865 DEBUG Processing 518/563 atomic regions from SNP 155155 to 155755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,025 DEBUG Processing 473/600 atomic regions from SNP 141868 to 142468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,075 DEBUG Processing 575/664 atomic regions from SNP 172338 to 172938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,179 DEBUG Processing 222/534 atomic regions from SNP 66521 to 67122 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,218 DEBUG Processing 519/563 atomic regions from SNP 155455 to 156055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,349 DEBUG Processing 474/600 atomic regions from SNP 142168 to 142768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,414 DEBUG Processing 576/664 atomic regions from SNP 172638 to 173238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,475 DEBUG Processing 223/534 atomic regions from SNP 66822 to 67423 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,562 DEBUG Processing 520/563 atomic regions from SNP 155755 to 156355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,717 DEBUG Processing 475/600 atomic regions from SNP 142468 to 143068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,719 DEBUG Processing 577/664 atomic regions from SNP 172938 to 173538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,732 DEBUG Processing 224/534 atomic regions from SNP 67123 to 67724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,867 DEBUG Processing 521/563 atomic regions from SNP 156055 to 156655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,050 DEBUG Processing 225/534 atomic regions from SNP 67424 to 68025 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,066 DEBUG Processing 578/664 atomic regions from SNP 173238 to 173838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,092 DEBUG Processing 476/600 atomic regions from SNP 142768 to 143368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,150 DEBUG Processing 522/563 atomic regions from SNP 156355 to 156955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,363 DEBUG Processing 226/534 atomic regions from SNP 67725 to 68326 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,429 DEBUG Processing 579/664 atomic regions from SNP 173538 to 174138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,432 DEBUG Processing 477/600 atomic regions from SNP 143068 to 143668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,491 DEBUG Processing 523/563 atomic regions from SNP 156655 to 157255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,681 DEBUG Processing 227/534 atomic regions from SNP 68026 to 68627 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,794 DEBUG Processing 478/600 atomic regions from SNP 143368 to 143968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,801 DEBUG Processing 580/664 atomic regions from SNP 173838 to 174438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,867 DEBUG Processing 524/563 atomic regions from SNP 156955 to 157555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,006 DEBUG Processing 228/534 atomic regions from SNP 68327 to 68928 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,165 DEBUG Processing 479/600 atomic regions from SNP 143668 to 144268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,188 DEBUG Processing 581/664 atomic regions from SNP 174138 to 174738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,233 DEBUG Processing 525/563 atomic regions from SNP 157255 to 157855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,312 DEBUG Processing 229/534 atomic regions from SNP 68628 to 69229 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,492 DEBUG Processing 480/600 atomic regions from SNP 143968 to 144568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,519 DEBUG Processing 582/664 atomic regions from SNP 174438 to 175038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,550 DEBUG Processing 526/563 atomic regions from SNP 157555 to 158155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,588 DEBUG Processing 230/534 atomic regions from SNP 68929 to 69530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,834 DEBUG Processing 481/600 atomic regions from SNP 144268 to 144868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,850 DEBUG Processing 583/664 atomic regions from SNP 174738 to 175338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,877 DEBUG Processing 527/563 atomic regions from SNP 157855 to 158455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,884 DEBUG Processing 231/534 atomic regions from SNP 69230 to 69831 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,187 DEBUG Processing 482/600 atomic regions from SNP 144568 to 145168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,188 DEBUG Processing 232/534 atomic regions from SNP 69531 to 70132 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,190 DEBUG Processing 584/664 atomic regions from SNP 175038 to 175638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,200 DEBUG Processing 528/563 atomic regions from SNP 158155 to 158755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,416 DEBUG Processing 233/534 atomic regions from SNP 69832 to 70433 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,437 DEBUG Processing 585/664 atomic regions from SNP 175338 to 175938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,457 DEBUG Processing 483/600 atomic regions from SNP 144868 to 145468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,460 DEBUG Processing 529/563 atomic regions from SNP 158455 to 159055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,616 DEBUG Processing 234/534 atomic regions from SNP 70133 to 70734 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,681 DEBUG Processing 586/664 atomic regions from SNP 175638 to 176238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,733 DEBUG Processing 530/563 atomic regions from SNP 158755 to 159355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,743 DEBUG Processing 484/600 atomic regions from SNP 145168 to 145768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,831 DEBUG Processing 235/534 atomic regions from SNP 70434 to 71035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,906 DEBUG Processing 587/664 atomic regions from SNP 175938 to 176538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,962 DEBUG Processing 531/563 atomic regions from SNP 159055 to 159655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,979 DEBUG Processing 485/600 atomic regions from SNP 145468 to 146068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,030 DEBUG Processing 236/534 atomic regions from SNP 70735 to 71336 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,137 DEBUG Processing 588/664 atomic regions from SNP 176238 to 176838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,181 DEBUG Processing 532/563 atomic regions from SNP 159355 to 159955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,202 DEBUG Processing 486/600 atomic regions from SNP 145768 to 146368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,237 DEBUG Processing 237/534 atomic regions from SNP 71036 to 71637 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,388 DEBUG Processing 589/664 atomic regions from SNP 176538 to 177138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,399 DEBUG Processing 533/563 atomic regions from SNP 159655 to 160255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,430 DEBUG Processing 238/534 atomic regions from SNP 71337 to 71938 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,436 DEBUG Processing 487/600 atomic regions from SNP 146068 to 146668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,610 DEBUG Processing 590/664 atomic regions from SNP 176838 to 177438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,610 DEBUG Processing 534/563 atomic regions from SNP 159955 to 160555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,620 DEBUG Processing 239/534 atomic regions from SNP 71638 to 72239 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,662 DEBUG Processing 488/600 atomic regions from SNP 146368 to 146968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,817 DEBUG Processing 535/563 atomic regions from SNP 160255 to 160855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,825 DEBUG Processing 591/664 atomic regions from SNP 177138 to 177738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,832 DEBUG Processing 240/534 atomic regions from SNP 71939 to 72540 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,888 DEBUG Processing 489/600 atomic regions from SNP 146668 to 147268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,024 DEBUG Processing 536/563 atomic regions from SNP 160555 to 161155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,037 DEBUG Processing 592/664 atomic regions from SNP 177438 to 178038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,049 DEBUG Processing 241/534 atomic regions from SNP 72240 to 72841 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,125 DEBUG Processing 490/600 atomic regions from SNP 146968 to 147568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,248 DEBUG Processing 537/563 atomic regions from SNP 160855 to 161455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,257 DEBUG Processing 242/534 atomic regions from SNP 72541 to 73142 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,257 DEBUG Processing 593/664 atomic regions from SNP 177738 to 178338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,361 DEBUG Processing 491/600 atomic regions from SNP 147268 to 147868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,490 DEBUG Processing 243/534 atomic regions from SNP 72842 to 73443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,502 DEBUG Processing 538/563 atomic regions from SNP 161155 to 161755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,502 DEBUG Processing 594/664 atomic regions from SNP 178038 to 178638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,588 DEBUG Processing 492/600 atomic regions from SNP 147568 to 148168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,708 DEBUG Processing 244/534 atomic regions from SNP 73143 to 73744 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,725 DEBUG Processing 595/664 atomic regions from SNP 178338 to 178938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,727 DEBUG Processing 539/563 atomic regions from SNP 161455 to 162055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,811 DEBUG Processing 493/600 atomic regions from SNP 147868 to 148468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,946 DEBUG Processing 245/534 atomic regions from SNP 73444 to 74045 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,973 DEBUG Processing 596/664 atomic regions from SNP 178638 to 179238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,975 DEBUG Processing 540/563 atomic regions from SNP 161755 to 162355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,036 DEBUG Processing 494/600 atomic regions from SNP 148168 to 148768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,192 DEBUG Processing 246/534 atomic regions from SNP 73745 to 74346 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,227 DEBUG Processing 597/664 atomic regions from SNP 178938 to 179538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,236 DEBUG Processing 541/563 atomic regions from SNP 162055 to 162655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,261 DEBUG Processing 495/600 atomic regions from SNP 148468 to 149068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,459 DEBUG Processing 247/534 atomic regions from SNP 74046 to 74647 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,495 DEBUG Processing 598/664 atomic regions from SNP 179238 to 179838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,520 DEBUG Processing 542/563 atomic regions from SNP 162355 to 162955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,534 DEBUG Processing 496/600 atomic regions from SNP 148768 to 149368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,751 DEBUG Processing 248/534 atomic regions from SNP 74347 to 74948 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,799 DEBUG Processing 599/664 atomic regions from SNP 179538 to 180138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,817 DEBUG Processing 497/600 atomic regions from SNP 149068 to 149668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,830 DEBUG Processing 543/563 atomic regions from SNP 162655 to 163255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,966 DEBUG Processing 249/534 atomic regions from SNP 74648 to 75249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,027 DEBUG Processing 498/600 atomic regions from SNP 149368 to 149968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,040 DEBUG Processing 600/664 atomic regions from SNP 179838 to 180438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,050 DEBUG Processing 544/563 atomic regions from SNP 162955 to 163555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,155 DEBUG Processing 250/534 atomic regions from SNP 74949 to 75550 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,228 DEBUG Processing 499/600 atomic regions from SNP 149668 to 150268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,252 DEBUG Processing 545/563 atomic regions from SNP 163255 to 163855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,262 DEBUG Processing 601/664 atomic regions from SNP 180138 to 180738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,347 DEBUG Processing 251/534 atomic regions from SNP 75250 to 75851 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,427 DEBUG Processing 500/600 atomic regions from SNP 149968 to 150568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,447 DEBUG Processing 546/563 atomic regions from SNP 163555 to 164155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,476 DEBUG Processing 602/664 atomic regions from SNP 180438 to 181038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,558 DEBUG Processing 252/534 atomic regions from SNP 75551 to 76152 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,633 DEBUG Processing 501/600 atomic regions from SNP 150268 to 150868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,642 DEBUG Processing 547/563 atomic regions from SNP 163855 to 164455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,685 DEBUG Processing 603/664 atomic regions from SNP 180738 to 181338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,781 DEBUG Processing 253/534 atomic regions from SNP 75852 to 76453 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,836 DEBUG Processing 502/600 atomic regions from SNP 150568 to 151168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,838 DEBUG Processing 548/563 atomic regions from SNP 164155 to 164755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,899 DEBUG Processing 604/664 atomic regions from SNP 181038 to 181638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,003 DEBUG Processing 254/534 atomic regions from SNP 76153 to 76754 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,036 DEBUG Processing 549/563 atomic regions from SNP 164455 to 165055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,042 DEBUG Processing 503/600 atomic regions from SNP 150868 to 151468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,115 DEBUG Processing 605/664 atomic regions from SNP 181338 to 181938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,227 DEBUG Processing 255/534 atomic regions from SNP 76454 to 77055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,240 DEBUG Processing 550/563 atomic regions from SNP 164755 to 165355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,247 DEBUG Processing 504/600 atomic regions from SNP 151168 to 151768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,331 DEBUG Processing 606/664 atomic regions from SNP 181638 to 182238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,477 DEBUG Processing 256/534 atomic regions from SNP 76755 to 77356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,486 DEBUG Processing 551/563 atomic regions from SNP 165055 to 165655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,489 DEBUG Processing 505/600 atomic regions from SNP 151468 to 152068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,597 DEBUG Processing 607/664 atomic regions from SNP 181938 to 182538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,723 DEBUG Processing 257/534 atomic regions from SNP 77056 to 77657 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,758 DEBUG Processing 506/600 atomic regions from SNP 151768 to 152368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,774 DEBUG Processing 552/563 atomic regions from SNP 165355 to 165955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,881 DEBUG Processing 608/664 atomic regions from SNP 182238 to 182838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,974 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:56:34,000 DEBUG Processing 258/534 atomic regions from SNP 77357 to 77958 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,025 DEBUG Processing 507/600 atomic regions from SNP 152068 to 152668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,060 DEBUG Processing 553/563 atomic regions from SNP 165655 to 166255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,155 DEBUG Processing 609/664 atomic regions from SNP 182538 to 183138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,328 DEBUG Processing 259/534 atomic regions from SNP 77658 to 78259 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,354 DEBUG Processing 508/600 atomic regions from SNP 152368 to 152968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,405 DEBUG Processing 554/563 atomic regions from SNP 165955 to 166555 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,521 DEBUG Processing 610/664 atomic regions from SNP 182838 to 183438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,654 DEBUG Processing 260/534 atomic regions from SNP 77959 to 78560 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,712 DEBUG Processing 509/600 atomic regions from SNP 152668 to 153268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,747 DEBUG Processing 555/563 atomic regions from SNP 166255 to 166855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,889 DEBUG Processing 611/664 atomic regions from SNP 183138 to 183738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,982 DEBUG Processing 261/534 atomic regions from SNP 78260 to 78861 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,062 DEBUG Processing 510/600 atomic regions from SNP 152968 to 153568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,077 DEBUG Processing 556/563 atomic regions from SNP 166555 to 167155 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,249 DEBUG Processing 612/664 atomic regions from SNP 183438 to 184038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,272 DEBUG Processing 262/534 atomic regions from SNP 78561 to 79162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,334 DEBUG Processing 557/563 atomic regions from SNP 166855 to 167455 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,357 DEBUG Processing 511/600 atomic regions from SNP 153268 to 153868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,489 DEBUG Processing 263/534 atomic regions from SNP 78862 to 79463 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,524 DEBUG Processing 613/664 atomic regions from SNP 183738 to 184338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,601 DEBUG Processing 558/563 atomic regions from SNP 167155 to 167755 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,664 DEBUG Processing 512/600 atomic regions from SNP 153568 to 154168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,687 DEBUG Processing 264/534 atomic regions from SNP 79163 to 79764 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,765 DEBUG Processing 614/664 atomic regions from SNP 184038 to 184638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,799 DEBUG Processing 559/563 atomic regions from SNP 167455 to 168055 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,883 DEBUG Processing 265/534 atomic regions from SNP 79464 to 80065 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,914 DEBUG Processing 513/600 atomic regions from SNP 153868 to 154468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,011 DEBUG Processing 615/664 atomic regions from SNP 184338 to 184938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,025 DEBUG Processing 560/563 atomic regions from SNP 167755 to 168355 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,105 DEBUG Processing 266/534 atomic regions from SNP 79765 to 80366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,157 DEBUG Processing 514/600 atomic regions from SNP 154168 to 154768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,304 DEBUG Processing 561/563 atomic regions from SNP 168055 to 168655 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,326 DEBUG Processing 616/664 atomic regions from SNP 184638 to 185238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,348 DEBUG Processing 267/534 atomic regions from SNP 80066 to 80667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,400 DEBUG Processing 515/600 atomic regions from SNP 154468 to 155068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,551 DEBUG Processing 562/563 atomic regions from SNP 168355 to 168955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,619 DEBUG Processing 268/534 atomic regions from SNP 80367 to 80967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,658 DEBUG Processing 617/664 atomic regions from SNP 184938 to 185538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,715 DEBUG Processing 516/600 atomic regions from SNP 154768 to 155368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,861 DEBUG Processing 563/563 atomic regions from SNP 168655 to 169255 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,871 DEBUG Processing 269/534 atomic regions from SNP 80667 to 81267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,946 DEBUG Processing 618/664 atomic regions from SNP 185238 to 185838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,967 DEBUG Processing 517/600 atomic regions from SNP 155068 to 155668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,073 DEBUG Unique SNPs positions in subchromosome 1: 169256 2025-01-31 09:56:37,123 DEBUG Processing 270/534 atomic regions from SNP 80967 to 81567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,236 DEBUG Processing 518/600 atomic regions from SNP 155368 to 155968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,266 DEBUG Processing 619/664 atomic regions from SNP 185538 to 186138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,310 DEBUG Processing 271/534 atomic regions from SNP 81267 to 81867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,493 DEBUG Processing 519/600 atomic regions from SNP 155668 to 156268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,524 DEBUG Processing 272/534 atomic regions from SNP 81567 to 82167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,558 DEBUG Processing 620/664 atomic regions from SNP 185838 to 186438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,768 DEBUG Processing 520/600 atomic regions from SNP 155968 to 156568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,770 DEBUG Processing 273/534 atomic regions from SNP 81867 to 82467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,856 DEBUG Processing 621/664 atomic regions from SNP 186138 to 186738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,999 DEBUG Processing 274/534 atomic regions from SNP 82167 to 82767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,025 DEBUG Processing 521/600 atomic regions from SNP 156268 to 156868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,195 DEBUG Processing 622/664 atomic regions from SNP 186438 to 187038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,201 DEBUG Processing 275/534 atomic regions from SNP 82467 to 83067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,252 DEBUG Processing 522/600 atomic regions from SNP 156568 to 157168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,257 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:56:38,394 DEBUG Processing 276/534 atomic regions from SNP 82767 to 83367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,460 DEBUG Processing 623/664 atomic regions from SNP 186738 to 187338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,470 DEBUG Processing 523/600 atomic regions from SNP 156868 to 157468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,579 DEBUG Processing 277/534 atomic regions from SNP 83067 to 83667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,677 DEBUG Processing 524/600 atomic regions from SNP 157168 to 157768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,717 DEBUG Processing 624/664 atomic regions from SNP 187038 to 187638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,761 DEBUG Processing 278/534 atomic regions from SNP 83367 to 83967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,878 DEBUG Processing 525/600 atomic regions from SNP 157468 to 158068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,972 DEBUG Processing 279/534 atomic regions from SNP 83667 to 84267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,989 DEBUG Processing 625/664 atomic regions from SNP 187338 to 187938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,079 DEBUG Processing 526/600 atomic regions from SNP 157768 to 158368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,205 DEBUG Processing 280/534 atomic regions from SNP 83967 to 84567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,284 DEBUG Processing 626/664 atomic regions from SNP 187638 to 188238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,294 DEBUG Processing 527/600 atomic regions from SNP 158068 to 158668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,392 DEBUG Processing 281/534 atomic regions from SNP 84267 to 84867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,505 DEBUG Processing 528/600 atomic regions from SNP 158368 to 158968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,538 DEBUG Processing 627/664 atomic regions from SNP 187938 to 188538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,574 DEBUG Processing 282/534 atomic regions from SNP 84567 to 85167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,711 DEBUG Processing 529/600 atomic regions from SNP 158668 to 159268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,759 DEBUG Processing 283/534 atomic regions from SNP 84867 to 85467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,770 DEBUG Processing 628/664 atomic regions from SNP 188238 to 188838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,915 DEBUG Processing 530/600 atomic regions from SNP 158968 to 159568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,947 DEBUG Processing 284/534 atomic regions from SNP 85167 to 85767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,991 DEBUG Processing 629/664 atomic regions from SNP 188538 to 189138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,166 DEBUG Processing 531/600 atomic regions from SNP 159268 to 159868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,187 DEBUG Processing 285/534 atomic regions from SNP 85467 to 86067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,253 DEBUG Processing 630/664 atomic regions from SNP 188838 to 189438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,373 DEBUG Processing 532/600 atomic regions from SNP 159568 to 160168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,385 DEBUG Processing 286/534 atomic regions from SNP 85767 to 86367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,474 DEBUG Processing 631/664 atomic regions from SNP 189138 to 189738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,584 DEBUG Processing 287/534 atomic regions from SNP 86067 to 86667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,592 DEBUG Processing 533/600 atomic regions from SNP 159868 to 160468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,705 DEBUG Processing 632/664 atomic regions from SNP 189438 to 190038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,765 DEBUG Processing 288/534 atomic regions from SNP 86367 to 86967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,787 DEBUG Processing 534/600 atomic regions from SNP 160168 to 160768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,922 DEBUG Processing 633/664 atomic regions from SNP 189738 to 190338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,946 DEBUG Processing 289/534 atomic regions from SNP 86667 to 87267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,983 DEBUG Processing 535/600 atomic regions from SNP 160468 to 161068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,132 DEBUG Processing 290/534 atomic regions from SNP 86967 to 87567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,138 DEBUG Processing 634/664 atomic regions from SNP 190038 to 190638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,202 DEBUG Processing 536/600 atomic regions from SNP 160768 to 161368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,319 DEBUG Processing 291/534 atomic regions from SNP 87267 to 87867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,344 DEBUG Subchromosome time: 155.04251486435533, subchromosome SNPs: 169256 2025-01-31 09:56:41,345 DEBUG Estimated BADs: [3.04, 0.76, 3.04, 1.52, 4.56, 0.51, 3.04, 0.76, 1.52, 3.04, 0.76, 0.38, 1.52, 0.38, 0.76, 1.52, 4.56, 3.04] SNP counts: [5215, 3971, 11232, 4366, 3607, 853, 7505, 7798, 8169, 13437, 20095, 8133, 6872, 7192, 40844, 4211, 8959, 6797] SNP IDs counts: [5215, 3971, 11232, 4366, 3607, 853, 7505, 7798, 8169, 13437, 20095, 8133, 6872, 7192, 40844, 4211, 8959, 6797] Critical gap: 530721bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.02Mbp], 6.22Mbp, 8.40Mbp, 14.48Mbp, 17.07Mbp, 18.97Mbp, 19.53Mbp, 23.67Mbp, 27.99Mbp, 32.40Mbp, 39.63Mbp, 50.98Mbp, 55.82Mbp, 59.81Mbp, 64.13Mbp, 87.43Mbp, 89.76Mbp, 94.48Mbp, 98.21Mbp] 2025-01-31 09:56:41,345 DEBUG chr16 time: 155.04304929077625 s 2025-01-31 09:56:41,352 DEBUG Processing 635/664 atomic regions from SNP 190338 to 190938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,416 DEBUG Processing 537/600 atomic regions from SNP 161068 to 161668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,455 DEBUG chr16: Fitting background model for 18 segments 2025-01-31 09:56:41,547 DEBUG Processing 292/534 atomic regions from SNP 87567 to 88167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,601 DEBUG Processing 636/664 atomic regions from SNP 190638 to 191238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,646 DEBUG Processing 538/600 atomic regions from SNP 161368 to 161968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,735 DEBUG Processing 293/534 atomic regions from SNP 87867 to 88467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,814 DEBUG Processing 637/664 atomic regions from SNP 190938 to 191538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,851 DEBUG Processing 539/600 atomic regions from SNP 161668 to 162268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,966 DEBUG Processing 294/534 atomic regions from SNP 88167 to 88767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,048 DEBUG Processing 638/664 atomic regions from SNP 191238 to 191838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,052 DEBUG Processing 540/600 atomic regions from SNP 161968 to 162568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,156 DEBUG Processing 295/534 atomic regions from SNP 88467 to 89067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,257 DEBUG Processing 541/600 atomic regions from SNP 162268 to 162868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,275 DEBUG Processing 639/664 atomic regions from SNP 191538 to 192138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,353 DEBUG Processing 296/534 atomic regions from SNP 88767 to 89367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,453 DEBUG Processing 542/600 atomic regions from SNP 162568 to 163168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,484 DEBUG Processing 640/664 atomic regions from SNP 191838 to 192438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,540 DEBUG Processing 297/534 atomic regions from SNP 89067 to 89667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,650 DEBUG Processing 543/600 atomic regions from SNP 162868 to 163468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,693 DEBUG Processing 641/664 atomic regions from SNP 192138 to 192738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,726 DEBUG Processing 298/534 atomic regions from SNP 89367 to 89967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,848 DEBUG Processing 544/600 atomic regions from SNP 163168 to 163768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,899 DEBUG Processing 642/664 atomic regions from SNP 192438 to 193038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,913 DEBUG Processing 299/534 atomic regions from SNP 89667 to 90267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,049 DEBUG Processing 545/600 atomic regions from SNP 163468 to 164068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,099 DEBUG Processing 300/534 atomic regions from SNP 89967 to 90567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,121 DEBUG Processing 643/664 atomic regions from SNP 192738 to 193338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,274 DEBUG Processing 546/600 atomic regions from SNP 163768 to 164368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,318 DEBUG Processing 301/534 atomic regions from SNP 90267 to 90867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,404 DEBUG Processing 644/664 atomic regions from SNP 193038 to 193638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,496 DEBUG Processing 547/600 atomic regions from SNP 164068 to 164668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,565 DEBUG Processing 302/534 atomic regions from SNP 90567 to 91167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,692 DEBUG Processing 645/664 atomic regions from SNP 193338 to 193938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,754 DEBUG Processing 548/600 atomic regions from SNP 164368 to 164968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,856 DEBUG Processing 303/534 atomic regions from SNP 90867 to 91467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:43,992 DEBUG Processing 646/664 atomic regions from SNP 193638 to 194238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,020 DEBUG Processing 549/600 atomic regions from SNP 164668 to 165268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,101 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:56:44,119 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:56:44,151 DEBUG Processing 304/534 atomic regions from SNP 91167 to 91767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,237 DEBUG Processing 647/664 atomic regions from SNP 193938 to 194538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,257 DEBUG Processing 550/600 atomic regions from SNP 164968 to 165568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,373 DEBUG Processing 305/534 atomic regions from SNP 91467 to 92067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,469 DEBUG Processing 648/664 atomic regions from SNP 194238 to 194838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,475 DEBUG Processing 551/600 atomic regions from SNP 165268 to 165868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,583 DEBUG Processing 306/534 atomic regions from SNP 91767 to 92367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,694 DEBUG Processing 552/600 atomic regions from SNP 165568 to 166168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,716 DEBUG Processing 649/664 atomic regions from SNP 194538 to 195138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,819 DEBUG Processing 307/534 atomic regions from SNP 92067 to 92667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:44,921 DEBUG Processing 553/600 atomic regions from SNP 165868 to 166468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,975 DEBUG Processing 650/664 atomic regions from SNP 194838 to 195438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,085 DEBUG Processing 308/534 atomic regions from SNP 92367 to 92967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,190 DEBUG Processing 554/600 atomic regions from SNP 166168 to 166768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,240 DEBUG Processing 651/664 atomic regions from SNP 195138 to 195738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,363 DEBUG Processing 309/534 atomic regions from SNP 92667 to 93267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,434 DEBUG Processing 555/600 atomic regions from SNP 166468 to 167068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,465 DEBUG Processing 652/664 atomic regions from SNP 195438 to 196038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,577 DEBUG Processing 310/534 atomic regions from SNP 92967 to 93567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,644 DEBUG Processing 556/600 atomic regions from SNP 166768 to 167368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,693 DEBUG Processing 653/664 atomic regions from SNP 195738 to 196338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,784 DEBUG Processing 311/534 atomic regions from SNP 93267 to 93867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:45,878 DEBUG Processing 557/600 atomic regions from SNP 167068 to 167668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,954 DEBUG Processing 654/664 atomic regions from SNP 196038 to 196638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,988 DEBUG Processing 312/534 atomic regions from SNP 93567 to 94167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,091 DEBUG Processing 558/600 atomic regions from SNP 167368 to 167968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,213 DEBUG Processing 655/664 atomic regions from SNP 196338 to 196938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,215 DEBUG Processing 313/534 atomic regions from SNP 93867 to 94467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,254 DEBUG chrY total SNP count: 105 2025-01-31 09:56:46,254 DEBUG chrY length: 91744698 2025-01-31 09:56:46,254 DEBUG ----------------------------------------- 2025-01-31 09:56:46,254 INFO Processing SNPs in chrY 2025-01-31 09:56:46,255 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 12), (12, 22), (22, 35), (35, 46), (46, 49), (49, 57), (57, 58), (58, 59), (59, 61), (61, 62), (62, 105)] 2025-01-31 09:56:46,255 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [12, 10, 13, 11, 3, 8, 1, 1, 2, 1, 43] SNP IDs counts: [12, 10, 13, 11, 3, 8, 1, 1, 2, 1, 43] Critical gap: 12981bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.78Mbp], 0.79Mbp[0.51Mbp], 1.30Mbp[0.98Mbp], 2.28Mbp[0.10Mbp], 2.39Mbp[1.63Mbp], 4.01Mbp[6.69Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[13.26Mbp], 35.98Mbp[7.95Mbp], 43.93Mbp[42.82Mbp], 86.75Mbp[3.97Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:56:46,256 DEBUG chrY time: 0.0014479085803031921 s 2025-01-31 09:56:46,308 DEBUG Processing 559/600 atomic regions from SNP 167668 to 168268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,405 DEBUG Processing 314/534 atomic regions from SNP 94167 to 94767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,447 DEBUG Processing 656/664 atomic regions from SNP 196638 to 197238 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,506 DEBUG Processing 560/600 atomic regions from SNP 167968 to 168568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,595 DEBUG Processing 315/534 atomic regions from SNP 94467 to 95067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,672 DEBUG Processing 657/664 atomic regions from SNP 196938 to 197538 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,709 DEBUG Processing 561/600 atomic regions from SNP 168268 to 168868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,785 DEBUG Processing 316/534 atomic regions from SNP 94767 to 95367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:46,887 DEBUG Processing 658/664 atomic regions from SNP 197238 to 197838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,911 DEBUG Processing 562/600 atomic regions from SNP 168568 to 169168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,978 DEBUG Processing 317/534 atomic regions from SNP 95067 to 95667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,145 DEBUG Processing 659/664 atomic regions from SNP 197538 to 198138 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,169 DEBUG Processing 563/600 atomic regions from SNP 168868 to 169468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,262 DEBUG Processing 318/534 atomic regions from SNP 95367 to 95967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,427 DEBUG Processing 660/664 atomic regions from SNP 197838 to 198438 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,448 DEBUG Processing 564/600 atomic regions from SNP 169168 to 169768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,551 DEBUG Processing 319/534 atomic regions from SNP 95667 to 96267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:47,744 DEBUG Processing 661/664 atomic regions from SNP 198138 to 198738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,768 DEBUG Processing 565/600 atomic regions from SNP 169468 to 170068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,856 DEBUG Processing 320/534 atomic regions from SNP 95967 to 96567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,062 DEBUG Processing 662/664 atomic regions from SNP 198438 to 199038 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,093 DEBUG Processing 566/600 atomic regions from SNP 169768 to 170368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,148 DEBUG Processing 321/534 atomic regions from SNP 96267 to 96867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,190 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:56:48,201 DEBUG chr18: Signal quantile: 0.995. signal threshold: 11. Best RMSEA: 0.019 2025-01-31 09:56:48,286 DEBUG Processing 663/664 atomic regions from SNP 198738 to 199338 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,305 DEBUG Processing 567/600 atomic regions from SNP 170068 to 170668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,347 DEBUG Processing 322/534 atomic regions from SNP 96567 to 97167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,515 DEBUG Processing 664/664 atomic regions from SNP 199038 to 199638 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,534 DEBUG Processing 568/600 atomic regions from SNP 170368 to 170968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,536 DEBUG Processing 323/534 atomic regions from SNP 96867 to 97467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,680 DEBUG Unique SNPs positions in subchromosome 1: 199639 2025-01-31 09:56:48,758 DEBUG Processing 324/534 atomic regions from SNP 97167 to 97767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:48,809 DEBUG Processing 569/600 atomic regions from SNP 170668 to 171268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,002 DEBUG Processing 325/534 atomic regions from SNP 97467 to 98067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,123 DEBUG Processing 570/600 atomic regions from SNP 170968 to 171568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,136 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:56:49,229 DEBUG Processing 326/534 atomic regions from SNP 97767 to 98367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,424 DEBUG Processing 571/600 atomic regions from SNP 171268 to 171868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,443 DEBUG Processing 327/534 atomic regions from SNP 98067 to 98667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,710 DEBUG Processing 328/534 atomic regions from SNP 98367 to 98967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:49,720 DEBUG Processing 572/600 atomic regions from SNP 171568 to 172168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,978 DEBUG Processing 329/534 atomic regions from SNP 98667 to 99267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,028 DEBUG Processing 573/600 atomic regions from SNP 171868 to 172468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,167 DEBUG Processing 330/534 atomic regions from SNP 98967 to 99567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,170 DEBUG chr18 total SNP count: 156544 2025-01-31 09:56:50,171 DEBUG chr18 length: 90702639 2025-01-31 09:56:50,171 DEBUG ----------------------------------------- 2025-01-31 09:56:50,171 INFO Processing SNPs in chr18 2025-01-31 09:56:50,276 DEBUG Processing 574/600 atomic regions from SNP 172168 to 172768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,328 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 156544)] 2025-01-31 09:56:50,348 DEBUG Processing 331/534 atomic regions from SNP 99267 to 99867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,435 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:50,515 DEBUG Processing 575/600 atomic regions from SNP 172468 to 173068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,531 DEBUG Processing 332/534 atomic regions from SNP 99567 to 100167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,714 DEBUG Processing 333/534 atomic regions from SNP 99867 to 100467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,750 DEBUG Processing 576/600 atomic regions from SNP 172768 to 173368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,897 DEBUG Processing 334/534 atomic regions from SNP 100167 to 100767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:50,968 DEBUG Processing 577/600 atomic regions from SNP 173068 to 173668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,085 DEBUG Processing 335/534 atomic regions from SNP 100467 to 101067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,196 DEBUG Processing 578/600 atomic regions from SNP 173368 to 173968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,269 DEBUG Processing 336/534 atomic regions from SNP 100767 to 101367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,421 DEBUG Processing 579/600 atomic regions from SNP 173668 to 174268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,455 DEBUG Processing 337/534 atomic regions from SNP 101067 to 101667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,641 DEBUG Processing 338/534 atomic regions from SNP 101367 to 101967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,654 DEBUG Processing 580/600 atomic regions from SNP 173968 to 174568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,825 DEBUG Processing 339/534 atomic regions from SNP 101667 to 102267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:51,890 DEBUG Processing 581/600 atomic regions from SNP 174268 to 174868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,009 DEBUG Processing 340/534 atomic regions from SNP 101967 to 102567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,128 DEBUG Processing 582/600 atomic regions from SNP 174568 to 175168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,191 DEBUG Processing 341/534 atomic regions from SNP 102267 to 102867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,354 DEBUG Processing 583/600 atomic regions from SNP 174868 to 175468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,372 DEBUG Processing 342/534 atomic regions from SNP 102567 to 103167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,572 DEBUG Processing 343/534 atomic regions from SNP 102867 to 103467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,597 DEBUG Processing 584/600 atomic regions from SNP 175168 to 175768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,801 DEBUG Processing 344/534 atomic regions from SNP 103167 to 103767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:52,870 DEBUG Processing 585/600 atomic regions from SNP 175468 to 176068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,026 DEBUG Processing 345/534 atomic regions from SNP 103467 to 104067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,128 DEBUG Processing 586/600 atomic regions from SNP 175768 to 176368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,210 DEBUG Processing 346/534 atomic regions from SNP 103767 to 104367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,351 DEBUG Processing 587/600 atomic regions from SNP 176068 to 176668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,389 DEBUG Processing 347/534 atomic regions from SNP 104067 to 104667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,562 DEBUG Processing 588/600 atomic regions from SNP 176368 to 176968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,573 DEBUG Processing 348/534 atomic regions from SNP 104367 to 104967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,808 DEBUG Processing 349/534 atomic regions from SNP 104667 to 105267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:53,827 DEBUG Processing 589/600 atomic regions from SNP 176668 to 177268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,994 DEBUG Processing 350/534 atomic regions from SNP 104967 to 105567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,052 DEBUG Subchromosome time: 197.46857718005776, subchromosome SNPs: 199639 2025-01-31 09:56:54,053 DEBUG Estimated BADs: [2.59, 0.43, 1.29, 0.65, 1.29, 0.32, 0.65, 2.59, 1.29, 2.59, 1.29, 0.32, 1.29, 2.59, 1.29, 3.88, 1.29] SNP counts: [4383, 2329, 39740, 31884, 14297, 6893, 8782, 5031, 6908, 21289, 9591, 7203, 3706, 12201, 8445, 5075, 11882] SNP IDs counts: [4383, 2329, 39740, 31884, 14297, 6893, 8782, 5031, 6908, 21289, 9591, 7203, 3706, 12201, 8445, 5075, 11882] Critical gap: 601540bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.45Mbp, 6.80Mbp, 33.12Mbp, 51.69Mbp, 59.86Mbp, 64.03Mbp, 69.15Mbp, 71.84Mbp, 75.60Mbp, 87.05Mbp, 92.82Mbp, 97.15Mbp, 99.22Mbp, 105.90Mbp, 110.37Mbp, 113.03Mbp, 120.13Mbp] 2025-01-31 09:56:54,053 DEBUG chr12 time: 197.46909780800343 s 2025-01-31 09:56:54,055 DEBUG Processing 590/600 atomic regions from SNP 176968 to 177568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,170 DEBUG chr12: Fitting background model for 17 segments 2025-01-31 09:56:54,178 DEBUG Processing 351/534 atomic regions from SNP 105267 to 105867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,295 DEBUG Processing 591/600 atomic regions from SNP 177268 to 177868 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,368 DEBUG Processing 352/534 atomic regions from SNP 105567 to 106167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,545 DEBUG Processing 592/600 atomic regions from SNP 177568 to 178168 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,562 DEBUG Processing 353/534 atomic regions from SNP 105867 to 106467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,753 DEBUG Processing 354/534 atomic regions from SNP 106167 to 106767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:54,793 DEBUG Processing 593/600 atomic regions from SNP 177868 to 178468 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,941 DEBUG Processing 355/534 atomic regions from SNP 106467 to 107067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,023 DEBUG Processing 594/600 atomic regions from SNP 178168 to 178768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,127 DEBUG Processing 356/534 atomic regions from SNP 106767 to 107367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,252 DEBUG Processing 595/600 atomic regions from SNP 178468 to 179068 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,312 DEBUG Processing 357/534 atomic regions from SNP 107067 to 107667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,470 DEBUG Processing 596/600 atomic regions from SNP 178768 to 179368 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,501 DEBUG Processing 358/534 atomic regions from SNP 107367 to 107967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,694 DEBUG Processing 359/534 atomic regions from SNP 107667 to 108267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,697 DEBUG Processing 597/600 atomic regions from SNP 179068 to 179668 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,888 DEBUG Processing 360/534 atomic regions from SNP 107967 to 108567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:55,936 DEBUG Processing 598/600 atomic regions from SNP 179368 to 179968 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,086 DEBUG Processing 361/534 atomic regions from SNP 108267 to 108867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,177 DEBUG Processing 599/600 atomic regions from SNP 179668 to 180268 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,284 DEBUG Processing 362/534 atomic regions from SNP 108567 to 109167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,383 DEBUG Processing 600/600 atomic regions from SNP 179968 to 180568 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,496 DEBUG Processing 363/534 atomic regions from SNP 108867 to 109467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,516 DEBUG Unique SNPs positions in subchromosome 1: 180569 2025-01-31 09:56:56,683 DEBUG Processing 364/534 atomic regions from SNP 109167 to 109767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:56,867 DEBUG Processing 365/534 atomic regions from SNP 109467 to 110067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,059 DEBUG Processing 366/534 atomic regions from SNP 109767 to 110367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,250 DEBUG Processing 367/534 atomic regions from SNP 110067 to 110667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,441 DEBUG Processing 368/534 atomic regions from SNP 110367 to 110967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,631 DEBUG Processing 369/534 atomic regions from SNP 110667 to 111267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:57,805 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:56:57,807 DEBUG chr19: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.013 2025-01-31 09:56:57,818 DEBUG Processing 370/534 atomic regions from SNP 110967 to 111567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,006 DEBUG Processing 371/534 atomic regions from SNP 111267 to 111867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,190 DEBUG Processing 372/534 atomic regions from SNP 111567 to 112167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,386 DEBUG Processing 373/534 atomic regions from SNP 111867 to 112467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,571 DEBUG Processing 374/534 atomic regions from SNP 112167 to 112767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,756 DEBUG Processing 375/534 atomic regions from SNP 112467 to 113067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,942 DEBUG Processing 376/534 atomic regions from SNP 112767 to 113367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:58,978 DEBUG chr19 total SNP count: 105206 2025-01-31 09:56:58,978 DEBUG chr19 length: 61431566 2025-01-31 09:56:58,978 DEBUG ----------------------------------------- 2025-01-31 09:56:58,978 INFO Processing SNPs in chr19 2025-01-31 09:56:59,083 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 105206)] 2025-01-31 09:56:59,126 DEBUG Processing 377/534 atomic regions from SNP 113067 to 113667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,154 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:59,309 DEBUG Processing 378/534 atomic regions from SNP 113367 to 113967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,491 DEBUG Processing 379/534 atomic regions from SNP 113667 to 114267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,672 DEBUG Processing 380/534 atomic regions from SNP 113967 to 114567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:59,852 DEBUG Processing 381/534 atomic regions from SNP 114267 to 114867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,031 DEBUG Processing 382/534 atomic regions from SNP 114567 to 115167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,214 DEBUG Processing 383/534 atomic regions from SNP 114867 to 115467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,397 DEBUG Processing 384/534 atomic regions from SNP 115167 to 115767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,576 DEBUG Processing 385/534 atomic regions from SNP 115467 to 116067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,759 DEBUG Processing 386/534 atomic regions from SNP 115767 to 116367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:00,941 DEBUG Processing 387/534 atomic regions from SNP 116067 to 116667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,125 DEBUG Processing 388/534 atomic regions from SNP 116367 to 116967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,306 DEBUG Processing 389/534 atomic regions from SNP 116667 to 117267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,486 DEBUG Processing 390/534 atomic regions from SNP 116967 to 117567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,668 DEBUG Processing 391/534 atomic regions from SNP 117267 to 117867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,855 DEBUG Processing 392/534 atomic regions from SNP 117567 to 118167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:01,935 DEBUG Subchromosome time: 174.0860520787537, subchromosome SNPs: 180569 2025-01-31 09:57:01,935 DEBUG Estimated BADs: [0.94, 1.88, 0.47, 0.94, 1.88, 3.75, 0.94, 3.75, 0.94, 1.88, 0.94, 3.75, 7.51, 3.75, 1.88, 5.63, 1.88, 5.63, 1.88] SNP counts: [3323, 15133, 21071, 9618, 8734, 4527, 33064, 3896, 7682, 5511, 9909, 5495, 12633, 6474, 5458, 1154, 16823, 9227, 837] SNP IDs counts: [3323, 15133, 21071, 9618, 8734, 4527, 33064, 3896, 7682, 5511, 9909, 5495, 12633, 6474, 5458, 1154, 16823, 9227, 837] Critical gap: 545229bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.07Mbp, 13.49Mbp, 25.79Mbp, 31.18Mbp, 36.18Mbp, 38.60Mbp, 57.57Mbp, 59.62Mbp, 63.99Mbp, 67.09Mbp, 72.67Mbp, 75.66Mbp, 82.38Mbp, 85.85Mbp, 88.73Mbp, 89.34Mbp, 98.51Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:57:01,935 DEBUG chr15 time: 174.08654818683863 s 2025-01-31 09:57:02,042 DEBUG chr15: Fitting background model for 19 segments 2025-01-31 09:57:02,046 DEBUG Processing 393/534 atomic regions from SNP 117867 to 118467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,247 DEBUG Processing 394/534 atomic regions from SNP 118167 to 118767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,432 DEBUG Processing 395/534 atomic regions from SNP 118467 to 119067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,623 DEBUG Processing 396/534 atomic regions from SNP 118767 to 119367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:02,818 DEBUG Processing 397/534 atomic regions from SNP 119067 to 119667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,003 DEBUG Processing 398/534 atomic regions from SNP 119367 to 119967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,189 DEBUG Processing 399/534 atomic regions from SNP 119667 to 120267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,377 DEBUG Processing 400/534 atomic regions from SNP 119967 to 120567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,564 DEBUG Processing 401/534 atomic regions from SNP 120267 to 120867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,752 DEBUG Processing 402/534 atomic regions from SNP 120567 to 121167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:03,941 DEBUG Processing 403/534 atomic regions from SNP 120867 to 121467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,129 DEBUG Processing 404/534 atomic regions from SNP 121167 to 121767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,314 DEBUG Processing 405/534 atomic regions from SNP 121467 to 122067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,502 DEBUG Processing 406/534 atomic regions from SNP 121767 to 122367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,687 DEBUG Processing 407/534 atomic regions from SNP 122067 to 122667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:04,868 DEBUG Processing 408/534 atomic regions from SNP 122367 to 122967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,045 DEBUG Processing 409/534 atomic regions from SNP 122667 to 123267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,222 DEBUG Processing 410/534 atomic regions from SNP 122967 to 123567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,401 DEBUG Processing 411/534 atomic regions from SNP 123267 to 123867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,583 DEBUG Processing 412/534 atomic regions from SNP 123567 to 124167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,774 DEBUG Processing 413/534 atomic regions from SNP 123867 to 124467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:05,959 DEBUG Processing 414/534 atomic regions from SNP 124167 to 124767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,147 DEBUG Processing 415/534 atomic regions from SNP 124467 to 125067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,332 DEBUG Processing 416/534 atomic regions from SNP 124767 to 125367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,519 DEBUG Processing 417/534 atomic regions from SNP 125067 to 125667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,709 DEBUG Processing 418/534 atomic regions from SNP 125367 to 125967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:06,893 DEBUG Processing 419/534 atomic regions from SNP 125667 to 126267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,080 DEBUG Processing 420/534 atomic regions from SNP 125967 to 126567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,267 DEBUG Processing 421/534 atomic regions from SNP 126267 to 126867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,453 DEBUG Processing 422/534 atomic regions from SNP 126567 to 127167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,636 DEBUG Processing 423/534 atomic regions from SNP 126867 to 127467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:07,822 DEBUG Processing 424/534 atomic regions from SNP 127167 to 127767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,011 DEBUG Processing 425/534 atomic regions from SNP 127467 to 128067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,209 DEBUG Processing 426/534 atomic regions from SNP 127767 to 128367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,398 DEBUG Processing 427/534 atomic regions from SNP 128067 to 128667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,585 DEBUG Processing 428/534 atomic regions from SNP 128367 to 128967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,770 DEBUG Processing 429/534 atomic regions from SNP 128667 to 129267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:08,959 DEBUG Processing 430/534 atomic regions from SNP 128967 to 129567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,080 DEBUG Segmenting atomic regions: 2025-01-31 09:57:09,148 DEBUG Processing 431/534 atomic regions from SNP 129267 to 129867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,149 DEBUG Processing 1/520 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,336 DEBUG Processing 2/520 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,341 DEBUG Processing 432/534 atomic regions from SNP 129567 to 130167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,516 DEBUG Processing 3/520 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,528 DEBUG Processing 433/534 atomic regions from SNP 129867 to 130467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,695 DEBUG Processing 4/520 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,718 DEBUG Processing 434/534 atomic regions from SNP 130167 to 130767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:09,874 DEBUG Processing 5/520 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,907 DEBUG Processing 435/534 atomic regions from SNP 130467 to 131067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,054 DEBUG Processing 6/520 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,095 DEBUG Processing 436/534 atomic regions from SNP 130767 to 131367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,233 DEBUG Processing 7/520 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,278 DEBUG Processing 437/534 atomic regions from SNP 131067 to 131667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,429 DEBUG Processing 8/520 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,479 DEBUG Processing 438/534 atomic regions from SNP 131367 to 131967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,613 DEBUG Processing 9/520 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,664 DEBUG Processing 439/534 atomic regions from SNP 131667 to 132267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,797 DEBUG Processing 10/520 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,853 DEBUG Processing 440/534 atomic regions from SNP 131967 to 132567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:10,985 DEBUG Processing 11/520 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,045 DEBUG Processing 441/534 atomic regions from SNP 132267 to 132867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,177 DEBUG Processing 12/520 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,239 DEBUG Processing 442/534 atomic regions from SNP 132567 to 133167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,358 DEBUG Processing 13/520 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,429 DEBUG Processing 443/534 atomic regions from SNP 132867 to 133467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,556 DEBUG Processing 14/520 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,617 DEBUG Processing 444/534 atomic regions from SNP 133167 to 133767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,741 DEBUG Processing 15/520 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,802 DEBUG Processing 445/534 atomic regions from SNP 133467 to 134067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:11,915 DEBUG Processing 16/520 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,919 DEBUG Segmenting atomic regions: 2025-01-31 09:57:11,966 DEBUG Processing 1/349 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:11,989 DEBUG Processing 446/534 atomic regions from SNP 133767 to 134367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,096 DEBUG Processing 17/520 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,174 DEBUG Processing 2/349 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,187 DEBUG Processing 447/534 atomic regions from SNP 134067 to 134667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,288 DEBUG Processing 18/520 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,380 DEBUG Processing 3/349 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,394 DEBUG Processing 448/534 atomic regions from SNP 134367 to 134967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,492 DEBUG Processing 19/520 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,568 DEBUG Processing 4/349 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,577 DEBUG Processing 449/534 atomic regions from SNP 134667 to 135267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,670 DEBUG Processing 20/520 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,759 DEBUG Processing 5/349 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:12,761 DEBUG Processing 450/534 atomic regions from SNP 134967 to 135567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,850 DEBUG Processing 21/520 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,947 DEBUG Processing 451/534 atomic regions from SNP 135267 to 135867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:12,961 DEBUG Processing 6/349 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,032 DEBUG Processing 22/520 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,131 DEBUG Processing 452/534 atomic regions from SNP 135567 to 136167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,171 DEBUG Processing 7/349 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,215 DEBUG Processing 23/520 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,313 DEBUG Processing 453/534 atomic regions from SNP 135867 to 136467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,375 DEBUG Processing 8/349 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,391 DEBUG Processing 24/520 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,501 DEBUG Processing 454/534 atomic regions from SNP 136167 to 136767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,581 DEBUG Processing 25/520 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,596 DEBUG Processing 9/349 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,685 DEBUG Processing 455/534 atomic regions from SNP 136467 to 137067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,756 DEBUG Processing 26/520 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,795 DEBUG Processing 10/349 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:13,872 DEBUG Processing 456/534 atomic regions from SNP 136767 to 137367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:13,933 DEBUG Processing 27/520 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,993 DEBUG Processing 11/349 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,058 DEBUG Processing 457/534 atomic regions from SNP 137067 to 137667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,111 DEBUG Processing 28/520 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,192 DEBUG Processing 12/349 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,247 DEBUG Processing 458/534 atomic regions from SNP 137367 to 137967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,291 DEBUG Processing 29/520 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,396 DEBUG Processing 13/349 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,432 DEBUG Processing 459/534 atomic regions from SNP 137667 to 138267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,487 DEBUG Processing 30/520 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,583 DEBUG Processing 14/349 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,611 DEBUG Processing 460/534 atomic regions from SNP 137967 to 138567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,669 DEBUG Processing 31/520 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,785 DEBUG Processing 15/349 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:14,790 DEBUG Processing 461/534 atomic regions from SNP 138267 to 138867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,843 DEBUG Processing 32/520 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,976 DEBUG Processing 462/534 atomic regions from SNP 138567 to 139167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:14,994 DEBUG Processing 16/349 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,017 DEBUG Processing 33/520 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,164 DEBUG Processing 463/534 atomic regions from SNP 138867 to 139467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,195 DEBUG Processing 34/520 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,207 DEBUG Processing 17/349 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,347 DEBUG Processing 464/534 atomic regions from SNP 139167 to 139767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,371 DEBUG Processing 35/520 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,428 DEBUG Processing 18/349 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,531 DEBUG Processing 465/534 atomic regions from SNP 139467 to 140067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,546 DEBUG Processing 36/520 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,636 DEBUG Processing 19/349 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,722 DEBUG Processing 466/534 atomic regions from SNP 139767 to 140367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:15,724 DEBUG Processing 37/520 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,845 DEBUG Processing 20/349 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:15,914 DEBUG Processing 38/520 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,922 DEBUG Processing 467/534 atomic regions from SNP 140067 to 140667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,054 DEBUG Processing 21/349 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,102 DEBUG Processing 39/520 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,122 DEBUG Processing 468/534 atomic regions from SNP 140367 to 140967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,254 DEBUG Processing 22/349 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,282 DEBUG Processing 40/520 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,320 DEBUG Processing 469/534 atomic regions from SNP 140667 to 141267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,441 DEBUG Processing 23/349 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,458 DEBUG Processing 41/520 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,518 DEBUG Processing 470/534 atomic regions from SNP 140967 to 141567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,633 DEBUG Processing 42/520 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,644 DEBUG Processing 24/349 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,724 DEBUG Processing 471/534 atomic regions from SNP 141267 to 141867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,813 DEBUG Processing 43/520 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,850 DEBUG Processing 25/349 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:16,933 DEBUG Processing 472/534 atomic regions from SNP 141567 to 142167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:16,991 DEBUG Processing 44/520 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,058 DEBUG Processing 26/349 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,122 DEBUG Processing 473/534 atomic regions from SNP 141867 to 142467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,176 DEBUG Processing 45/520 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,258 DEBUG Processing 27/349 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,302 DEBUG Processing 474/534 atomic regions from SNP 142167 to 142767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,351 DEBUG Processing 46/520 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,460 DEBUG Processing 28/349 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,483 DEBUG Processing 475/534 atomic regions from SNP 142467 to 143067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,529 DEBUG Processing 47/520 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,641 DEBUG Processing 29/349 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,674 DEBUG Processing 476/534 atomic regions from SNP 142767 to 143367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,707 DEBUG Processing 48/520 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,811 DEBUG Processing 30/349 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:17,866 DEBUG Processing 477/534 atomic regions from SNP 143067 to 143667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:17,884 DEBUG Processing 49/520 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,978 DEBUG Processing 31/349 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,052 DEBUG Processing 478/534 atomic regions from SNP 143367 to 143967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,061 DEBUG Processing 50/520 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,154 DEBUG Processing 32/349 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,240 DEBUG Processing 479/534 atomic regions from SNP 143667 to 144267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,243 DEBUG Processing 51/520 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,338 DEBUG Processing 33/349 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,424 DEBUG Processing 52/520 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,439 DEBUG Processing 480/534 atomic regions from SNP 143967 to 144567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,546 DEBUG Processing 34/349 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,603 DEBUG Processing 53/520 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,626 DEBUG Processing 481/534 atomic regions from SNP 144267 to 144867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,754 DEBUG Processing 35/349 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,775 DEBUG Processing 54/520 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,804 DEBUG Processing 482/534 atomic regions from SNP 144567 to 145167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:18,947 DEBUG Processing 36/349 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:18,950 DEBUG Processing 55/520 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,988 DEBUG Processing 483/534 atomic regions from SNP 144867 to 145467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,120 DEBUG Processing 37/349 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,133 DEBUG Processing 56/520 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,175 DEBUG Processing 484/534 atomic regions from SNP 145167 to 145767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,290 DEBUG Processing 38/349 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,310 DEBUG Processing 57/520 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,372 DEBUG Processing 485/534 atomic regions from SNP 145467 to 146067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,475 DEBUG Processing 39/349 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,490 DEBUG Processing 58/520 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,573 DEBUG Processing 486/534 atomic regions from SNP 145767 to 146367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,667 DEBUG Processing 59/520 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,687 DEBUG Processing 40/349 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,757 DEBUG Processing 487/534 atomic regions from SNP 146067 to 146667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:19,837 DEBUG Processing 60/520 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,888 DEBUG Processing 41/349 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:19,939 DEBUG Processing 488/534 atomic regions from SNP 146367 to 146967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,009 DEBUG Processing 61/520 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,075 DEBUG Processing 42/349 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,123 DEBUG Processing 489/534 atomic regions from SNP 146667 to 147267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,182 DEBUG Processing 62/520 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,262 DEBUG Processing 43/349 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,306 DEBUG Processing 490/534 atomic regions from SNP 146967 to 147567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,355 DEBUG Processing 63/520 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,456 DEBUG Processing 44/349 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,496 DEBUG Processing 491/534 atomic regions from SNP 147267 to 147867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,529 DEBUG Processing 64/520 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,652 DEBUG Processing 45/349 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,699 DEBUG Processing 492/534 atomic regions from SNP 147567 to 148167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:20,705 DEBUG Processing 65/520 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,844 DEBUG Processing 46/349 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:20,884 DEBUG Processing 66/520 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,890 DEBUG Processing 493/534 atomic regions from SNP 147867 to 148467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,015 DEBUG Processing 47/349 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,064 DEBUG Processing 67/520 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,078 DEBUG Processing 494/534 atomic regions from SNP 148167 to 148767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,184 DEBUG Processing 48/349 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,242 DEBUG Processing 68/520 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,266 DEBUG Processing 495/534 atomic regions from SNP 148467 to 149067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,356 DEBUG Processing 49/349 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,414 DEBUG Processing 69/520 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,454 DEBUG Processing 496/534 atomic regions from SNP 148767 to 149367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,533 DEBUG Processing 50/349 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,591 DEBUG Processing 70/520 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,639 DEBUG Processing 497/534 atomic regions from SNP 149067 to 149667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,709 DEBUG Processing 51/349 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,767 DEBUG Processing 71/520 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,821 DEBUG Processing 498/534 atomic regions from SNP 149367 to 149967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:21,906 DEBUG Processing 52/349 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:21,942 DEBUG Processing 72/520 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,000 DEBUG Processing 499/534 atomic regions from SNP 149667 to 150267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,087 DEBUG Processing 53/349 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,118 DEBUG Processing 73/520 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,179 DEBUG Processing 500/534 atomic regions from SNP 149967 to 150567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,259 DEBUG Processing 54/349 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,294 DEBUG Processing 74/520 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,359 DEBUG Processing 501/534 atomic regions from SNP 150267 to 150867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,438 DEBUG Processing 55/349 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,475 DEBUG Processing 75/520 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,542 DEBUG Processing 502/534 atomic regions from SNP 150567 to 151167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,617 DEBUG Processing 56/349 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,656 DEBUG Processing 76/520 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,729 DEBUG Processing 503/534 atomic regions from SNP 150867 to 151467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,787 DEBUG Processing 57/349 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,830 DEBUG Processing 77/520 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,917 DEBUG Processing 504/534 atomic regions from SNP 151167 to 151767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:22,957 DEBUG Processing 58/349 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:22,998 DEBUG Processing 78/520 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,106 DEBUG Processing 505/534 atomic regions from SNP 151467 to 152067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,139 DEBUG Processing 59/349 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,171 DEBUG Processing 79/520 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,292 DEBUG Processing 506/534 atomic regions from SNP 151767 to 152367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,320 DEBUG Processing 60/349 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,349 DEBUG Processing 80/520 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,483 DEBUG Processing 507/534 atomic regions from SNP 152067 to 152667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,492 DEBUG Processing 61/349 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,527 DEBUG Processing 81/520 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,668 DEBUG Processing 508/534 atomic regions from SNP 152367 to 152967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,672 DEBUG Processing 62/349 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,705 DEBUG Processing 82/520 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,856 DEBUG Processing 63/349 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:23,857 DEBUG Processing 509/534 atomic regions from SNP 152667 to 153267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:23,889 DEBUG Processing 83/520 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,034 DEBUG Processing 64/349 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,043 DEBUG Processing 510/534 atomic regions from SNP 152967 to 153567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,072 DEBUG Processing 84/520 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,215 DEBUG Processing 65/349 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,230 DEBUG Processing 511/534 atomic regions from SNP 153267 to 153867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,252 DEBUG Processing 85/520 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,391 DEBUG Processing 66/349 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,413 DEBUG Processing 512/534 atomic regions from SNP 153567 to 154167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,428 DEBUG Processing 86/520 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,565 DEBUG Processing 67/349 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,598 DEBUG Processing 513/534 atomic regions from SNP 153867 to 154467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,606 DEBUG Processing 87/520 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,734 DEBUG Processing 68/349 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,779 DEBUG Processing 88/520 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,781 DEBUG Processing 514/534 atomic regions from SNP 154167 to 154767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:24,902 DEBUG Processing 69/349 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:24,954 DEBUG Processing 89/520 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,962 DEBUG Processing 515/534 atomic regions from SNP 154467 to 155067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,066 DEBUG Processing 70/349 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,133 DEBUG Processing 90/520 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,145 DEBUG Processing 516/534 atomic regions from SNP 154767 to 155367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,229 DEBUG Processing 71/349 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,312 DEBUG Processing 91/520 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,330 DEBUG Processing 517/534 atomic regions from SNP 155067 to 155667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,396 DEBUG Processing 72/349 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,491 DEBUG Processing 92/520 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,515 DEBUG Processing 518/534 atomic regions from SNP 155367 to 155967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,570 DEBUG Processing 73/349 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,662 DEBUG Processing 93/520 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,696 DEBUG Processing 519/534 atomic regions from SNP 155667 to 156267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,735 DEBUG Processing 74/349 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:25,835 DEBUG Processing 94/520 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,874 DEBUG Processing 520/534 atomic regions from SNP 155967 to 156567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:25,891 DEBUG Processing 75/349 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,007 DEBUG Processing 95/520 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,053 DEBUG Processing 521/534 atomic regions from SNP 156267 to 156867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,055 DEBUG Processing 76/349 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,181 DEBUG Processing 96/520 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,220 DEBUG Processing 77/349 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,230 DEBUG Processing 522/534 atomic regions from SNP 156567 to 157167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,353 DEBUG Processing 97/520 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,383 DEBUG Processing 78/349 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,408 DEBUG Processing 523/534 atomic regions from SNP 156867 to 157467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,532 DEBUG Processing 98/520 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,542 DEBUG Processing 79/349 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,591 DEBUG Processing 524/534 atomic regions from SNP 157167 to 157767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,705 DEBUG Processing 80/349 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,705 DEBUG Processing 99/520 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,776 DEBUG Processing 525/534 atomic regions from SNP 157467 to 158067 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:26,871 DEBUG Processing 81/349 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:26,878 DEBUG Processing 100/520 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,958 DEBUG Processing 526/534 atomic regions from SNP 157767 to 158367 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,036 DEBUG Processing 82/349 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,052 DEBUG Processing 101/520 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,139 DEBUG Processing 527/534 atomic regions from SNP 158067 to 158667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,207 DEBUG Processing 83/349 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,223 DEBUG Processing 102/520 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,319 DEBUG Processing 528/534 atomic regions from SNP 158367 to 158967 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,372 DEBUG Processing 84/349 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,396 DEBUG Processing 103/520 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,502 DEBUG Processing 529/534 atomic regions from SNP 158667 to 159267 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,537 DEBUG Processing 85/349 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,571 DEBUG Processing 104/520 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,682 DEBUG Processing 530/534 atomic regions from SNP 158967 to 159567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,703 DEBUG Processing 86/349 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,747 DEBUG Processing 105/520 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,864 DEBUG Processing 531/534 atomic regions from SNP 159267 to 159867 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:27,872 DEBUG Processing 87/349 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:27,931 DEBUG Processing 106/520 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,035 DEBUG Processing 88/349 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,041 DEBUG Processing 532/534 atomic regions from SNP 159567 to 160167 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,109 DEBUG Processing 107/520 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,196 DEBUG Processing 89/349 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,218 DEBUG Processing 533/534 atomic regions from SNP 159867 to 160467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,282 DEBUG Processing 108/520 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,362 DEBUG Processing 90/349 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,396 DEBUG Processing 534/534 atomic regions from SNP 160167 to 160767 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:28,452 DEBUG Processing 109/520 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,513 DEBUG Unique SNPs positions in subchromosome 1: 160768 2025-01-31 09:57:28,529 DEBUG Processing 91/349 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,625 DEBUG Processing 110/520 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,689 DEBUG Processing 92/349 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,795 DEBUG Processing 111/520 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,850 DEBUG Processing 93/349 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:28,966 DEBUG Processing 112/520 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,014 DEBUG Processing 94/349 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,138 DEBUG Processing 113/520 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,179 DEBUG Processing 95/349 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,320 DEBUG Processing 114/520 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,345 DEBUG Processing 96/349 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,500 DEBUG Processing 115/520 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,515 DEBUG Processing 97/349 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,672 DEBUG Processing 116/520 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,676 DEBUG Processing 98/349 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:29,845 DEBUG Processing 117/520 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,847 DEBUG Processing 99/349 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,012 DEBUG Processing 100/349 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,020 DEBUG Processing 118/520 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,173 DEBUG Processing 101/349 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,195 DEBUG Processing 119/520 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,337 DEBUG Processing 102/349 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,369 DEBUG Processing 120/520 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,522 DEBUG Processing 103/349 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,542 DEBUG Processing 121/520 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,690 DEBUG Processing 104/349 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,720 DEBUG Processing 122/520 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,859 DEBUG Processing 105/349 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:30,906 DEBUG Processing 123/520 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,025 DEBUG Processing 106/349 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,098 DEBUG Processing 124/520 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,197 DEBUG Processing 107/349 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,270 DEBUG Processing 125/520 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,364 DEBUG Processing 108/349 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,444 DEBUG Processing 126/520 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,527 DEBUG Processing 109/349 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,623 DEBUG Processing 127/520 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,693 DEBUG Processing 110/349 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,795 DEBUG Processing 128/520 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,860 DEBUG Processing 111/349 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:31,964 DEBUG Processing 129/520 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,025 DEBUG Processing 112/349 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,134 DEBUG Processing 130/520 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,192 DEBUG Processing 113/349 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,303 DEBUG Processing 131/520 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,354 DEBUG Processing 114/349 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,478 DEBUG Processing 132/520 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,514 DEBUG Processing 115/349 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,653 DEBUG Processing 133/520 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,680 DEBUG Processing 116/349 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,828 DEBUG Processing 134/520 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,848 DEBUG Processing 117/349 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:32,999 DEBUG Processing 135/520 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,039 DEBUG Processing 118/349 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,168 DEBUG Processing 136/520 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,210 DEBUG Processing 119/349 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,259 DEBUG Subchromosome time: 145.89744491875172, subchromosome SNPs: 160768 2025-01-31 09:57:33,259 DEBUG Estimated BADs: [1.63, 0.54, 4.90, 3.26, 4.90, 1.63, 0.41, 0.82, 4.90, 1.63, 0.54, 4.90, 0.41, 0.82, 1.63, 0.41, 1.63, 0.33] SNP counts: [21466, 11414, 11465, 7596, 4731, 1208, 8135, 5832, 4706, 8396, 5733, 2994, 5081, 9999, 17909, 2993, 21363, 9747] SNP IDs counts: [21466, 11414, 11465, 7596, 4731, 1208, 8135, 5832, 4706, 8396, 5733, 2994, 5081, 9999, 17909, 2993, 21363, 9747] Critical gap: 526167bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.13Mbp, 23.53Mbp, 29.57Mbp, 33.76Mbp, 36.44Mbp, 37.13Mbp, 42.30Mbp, 45.45Mbp, 47.92Mbp, 52.44Mbp, 55.93Mbp, 57.53Mbp, 60.52Mbp, 66.07Mbp, 75.84Mbp, 77.57Mbp, 89.17Mbp, 94.99Mbp] 2025-01-31 09:57:33,259 DEBUG chr17 time: 145.89797627553344 s 2025-01-31 09:57:33,339 DEBUG Processing 137/520 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,358 DEBUG chr17: Fitting background model for 18 segments 2025-01-31 09:57:33,371 DEBUG Processing 120/349 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,510 DEBUG Processing 138/520 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,531 DEBUG Processing 121/349 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,681 DEBUG Processing 139/520 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,698 DEBUG Processing 122/349 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:33,854 DEBUG Processing 140/520 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,859 DEBUG Processing 123/349 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,024 DEBUG Processing 124/349 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,029 DEBUG Processing 141/520 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,186 DEBUG Processing 125/349 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,203 DEBUG Processing 142/520 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,349 DEBUG Processing 126/349 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,376 DEBUG Processing 143/520 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,536 DEBUG Processing 127/349 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,546 DEBUG Processing 144/520 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,703 DEBUG Processing 128/349 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,715 DEBUG Processing 145/520 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,868 DEBUG Processing 129/349 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:34,885 DEBUG Processing 146/520 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,033 DEBUG Processing 130/349 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,057 DEBUG Processing 147/520 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,200 DEBUG Processing 131/349 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,230 DEBUG Processing 148/520 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,371 DEBUG Processing 132/349 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,408 DEBUG Processing 149/520 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,537 DEBUG Processing 133/349 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,581 DEBUG Processing 150/520 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,701 DEBUG Processing 134/349 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,750 DEBUG Processing 151/520 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,868 DEBUG Processing 135/349 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:35,921 DEBUG Processing 152/520 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,037 DEBUG Processing 136/349 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,096 DEBUG Processing 153/520 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,205 DEBUG Processing 137/349 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,269 DEBUG Processing 154/520 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,363 DEBUG Processing 138/349 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,444 DEBUG Processing 155/520 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,519 DEBUG Processing 139/349 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,618 DEBUG Processing 156/520 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,681 DEBUG Processing 140/349 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,802 DEBUG Processing 157/520 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,842 DEBUG Processing 141/349 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:36,980 DEBUG Processing 158/520 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,006 DEBUG Processing 142/349 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,151 DEBUG Processing 159/520 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,170 DEBUG Processing 143/349 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,326 DEBUG Processing 160/520 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,340 DEBUG Processing 144/349 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,501 DEBUG Processing 145/349 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,502 DEBUG Processing 161/520 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,655 DEBUG Processing 146/349 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,677 DEBUG Processing 162/520 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,812 DEBUG Processing 147/349 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:37,852 DEBUG Processing 163/520 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,976 DEBUG Processing 148/349 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,023 DEBUG Processing 164/520 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,134 DEBUG Processing 149/349 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,194 DEBUG Processing 165/520 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,294 DEBUG Processing 150/349 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,362 DEBUG Processing 166/520 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,459 DEBUG Processing 151/349 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,531 DEBUG Processing 167/520 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,626 DEBUG Processing 152/349 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,706 DEBUG Processing 168/520 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,787 DEBUG Processing 153/349 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:38,901 DEBUG Processing 169/520 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,947 DEBUG Processing 154/349 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,086 DEBUG Processing 170/520 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,128 DEBUG Processing 155/349 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,260 DEBUG Processing 171/520 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,288 DEBUG Processing 156/349 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,437 DEBUG Processing 172/520 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,451 DEBUG Processing 157/349 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,615 DEBUG Processing 173/520 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,617 DEBUG Processing 158/349 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,778 DEBUG Processing 159/349 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,785 DEBUG Processing 174/520 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,936 DEBUG Processing 160/349 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:39,954 DEBUG Processing 175/520 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,090 DEBUG Processing 161/349 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,121 DEBUG Processing 176/520 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,248 DEBUG Processing 162/349 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,292 DEBUG Processing 177/520 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,414 DEBUG Processing 163/349 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,467 DEBUG Processing 178/520 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,575 DEBUG Processing 164/349 atomic regions from SNP 49063 to 49664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,645 DEBUG Processing 179/520 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,731 DEBUG Processing 165/349 atomic regions from SNP 49364 to 49965 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,818 DEBUG Processing 180/520 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,896 DEBUG Processing 166/349 atomic regions from SNP 49665 to 50266 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:40,989 DEBUG Processing 181/520 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,064 DEBUG Processing 167/349 atomic regions from SNP 49966 to 50567 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,158 DEBUG Processing 182/520 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,225 DEBUG Processing 168/349 atomic regions from SNP 50267 to 50868 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,340 DEBUG Processing 183/520 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,379 DEBUG Processing 169/349 atomic regions from SNP 50568 to 51169 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,535 DEBUG Processing 184/520 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,544 DEBUG Processing 170/349 atomic regions from SNP 50869 to 51470 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,716 DEBUG Processing 171/349 atomic regions from SNP 51170 to 51771 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,733 DEBUG Processing 185/520 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,878 DEBUG Processing 172/349 atomic regions from SNP 51471 to 52072 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:41,936 DEBUG Processing 186/520 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,042 DEBUG Processing 173/349 atomic regions from SNP 51772 to 52373 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,148 DEBUG Processing 187/520 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,209 DEBUG Processing 174/349 atomic regions from SNP 52073 to 52674 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,342 DEBUG Processing 188/520 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,381 DEBUG Processing 175/349 atomic regions from SNP 52374 to 52975 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,528 DEBUG Processing 189/520 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,551 DEBUG Processing 176/349 atomic regions from SNP 52675 to 53276 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,700 DEBUG Processing 190/520 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,711 DEBUG Processing 177/349 atomic regions from SNP 52976 to 53577 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:42,870 DEBUG Processing 191/520 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,873 DEBUG Processing 178/349 atomic regions from SNP 53277 to 53878 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,036 DEBUG Processing 179/349 atomic regions from SNP 53578 to 54179 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,061 DEBUG Processing 192/520 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,197 DEBUG Processing 180/349 atomic regions from SNP 53879 to 54480 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,252 DEBUG Processing 193/520 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,354 DEBUG Processing 181/349 atomic regions from SNP 54180 to 54781 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,453 DEBUG Processing 194/520 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,515 DEBUG Processing 182/349 atomic regions from SNP 54481 to 55082 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,648 DEBUG Processing 195/520 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:43,677 DEBUG Processing 183/349 atomic regions from SNP 54782 to 55383 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,840 DEBUG Processing 184/349 atomic regions from SNP 55083 to 55684 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:43,841 DEBUG Processing 196/520 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,003 DEBUG Processing 185/349 atomic regions from SNP 55384 to 55985 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,046 DEBUG Processing 197/520 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,167 DEBUG Processing 186/349 atomic regions from SNP 55685 to 56286 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,245 DEBUG Processing 198/520 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,334 DEBUG Processing 187/349 atomic regions from SNP 55986 to 56587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,451 DEBUG Processing 199/520 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,500 DEBUG Processing 188/349 atomic regions from SNP 56287 to 56888 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,652 DEBUG Processing 200/520 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,664 DEBUG Processing 189/349 atomic regions from SNP 56588 to 57189 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,828 DEBUG Processing 190/349 atomic regions from SNP 56889 to 57490 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:44,833 DEBUG Processing 201/520 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:44,999 DEBUG Processing 191/349 atomic regions from SNP 57190 to 57791 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,017 DEBUG Processing 202/520 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,173 DEBUG Processing 192/349 atomic regions from SNP 57491 to 58092 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,201 DEBUG Processing 203/520 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,347 DEBUG Processing 193/349 atomic regions from SNP 57792 to 58393 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,379 DEBUG Processing 204/520 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,509 DEBUG Processing 194/349 atomic regions from SNP 58093 to 58694 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,557 DEBUG Processing 205/520 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,671 DEBUG Processing 195/349 atomic regions from SNP 58394 to 58995 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,752 DEBUG Processing 206/520 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:45,836 DEBUG Processing 196/349 atomic regions from SNP 58695 to 59296 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:45,953 DEBUG Processing 207/520 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,004 DEBUG Processing 197/349 atomic regions from SNP 58996 to 59597 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,153 DEBUG Processing 208/520 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,176 DEBUG Processing 198/349 atomic regions from SNP 59297 to 59898 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,343 DEBUG Processing 199/349 atomic regions from SNP 59598 to 60199 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,350 DEBUG Processing 209/520 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,520 DEBUG Processing 200/349 atomic regions from SNP 59899 to 60500 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,541 DEBUG Processing 210/520 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,694 DEBUG Processing 201/349 atomic regions from SNP 60200 to 60801 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,726 DEBUG Processing 211/520 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:46,869 DEBUG Processing 202/349 atomic regions from SNP 60501 to 61102 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:46,908 DEBUG Processing 212/520 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,042 DEBUG Processing 203/349 atomic regions from SNP 60802 to 61403 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,092 DEBUG Processing 213/520 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,230 DEBUG Processing 204/349 atomic regions from SNP 61103 to 61704 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,271 DEBUG Processing 214/520 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,396 DEBUG Processing 205/349 atomic regions from SNP 61404 to 62005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,450 DEBUG Processing 215/520 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,564 DEBUG Processing 206/349 atomic regions from SNP 61705 to 62305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,633 DEBUG Processing 216/520 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,736 DEBUG Processing 207/349 atomic regions from SNP 62005 to 62605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,807 DEBUG Processing 217/520 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:47,915 DEBUG Processing 208/349 atomic regions from SNP 62305 to 62905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:47,989 DEBUG Processing 218/520 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,080 DEBUG Processing 209/349 atomic regions from SNP 62605 to 63205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,169 DEBUG Processing 219/520 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,244 DEBUG Processing 210/349 atomic regions from SNP 62905 to 63505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,350 DEBUG Processing 220/520 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,416 DEBUG Processing 211/349 atomic regions from SNP 63205 to 63805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,524 DEBUG Processing 221/520 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,590 DEBUG Processing 212/349 atomic regions from SNP 63505 to 64105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,702 DEBUG Processing 222/520 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,760 DEBUG Processing 213/349 atomic regions from SNP 63805 to 64405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:48,879 DEBUG Processing 223/520 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:48,919 DEBUG Processing 214/349 atomic regions from SNP 64105 to 64705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,057 DEBUG Processing 224/520 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,087 DEBUG Processing 215/349 atomic regions from SNP 64405 to 65005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,238 DEBUG Processing 225/520 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,264 DEBUG Processing 216/349 atomic regions from SNP 64705 to 65305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,418 DEBUG Processing 226/520 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,439 DEBUG Processing 217/349 atomic regions from SNP 65005 to 65605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,596 DEBUG Processing 227/520 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,607 DEBUG Processing 218/349 atomic regions from SNP 65305 to 65905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,775 DEBUG Processing 219/349 atomic regions from SNP 65605 to 66205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,778 DEBUG Processing 228/520 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:49,949 DEBUG Processing 220/349 atomic regions from SNP 65905 to 66505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:49,958 DEBUG Processing 229/520 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,125 DEBUG Processing 221/349 atomic regions from SNP 66205 to 66805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,138 DEBUG Processing 230/520 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,291 DEBUG Processing 222/349 atomic regions from SNP 66505 to 67105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,317 DEBUG Processing 231/520 atomic regions from SNP 69230 to 69831 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,468 DEBUG Processing 223/349 atomic regions from SNP 66805 to 67405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,494 DEBUG Processing 232/520 atomic regions from SNP 69531 to 70132 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,644 DEBUG Processing 224/349 atomic regions from SNP 67105 to 67705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,678 DEBUG Processing 233/520 atomic regions from SNP 69832 to 70433 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,817 DEBUG Processing 225/349 atomic regions from SNP 67405 to 68005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:50,867 DEBUG Processing 234/520 atomic regions from SNP 70133 to 70734 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:50,993 DEBUG Processing 226/349 atomic regions from SNP 67705 to 68305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,054 DEBUG Processing 235/520 atomic regions from SNP 70434 to 71035 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,166 DEBUG Processing 227/349 atomic regions from SNP 68005 to 68605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,234 DEBUG Processing 236/520 atomic regions from SNP 70735 to 71336 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,334 DEBUG Processing 228/349 atomic regions from SNP 68305 to 68905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,415 DEBUG Processing 237/520 atomic regions from SNP 71036 to 71637 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,504 DEBUG Processing 229/349 atomic regions from SNP 68605 to 69205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,587 DEBUG Processing 238/520 atomic regions from SNP 71337 to 71938 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,693 DEBUG Processing 230/349 atomic regions from SNP 68905 to 69505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,762 DEBUG Processing 239/520 atomic regions from SNP 71638 to 72239 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:51,898 DEBUG Processing 231/349 atomic regions from SNP 69205 to 69805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:51,942 DEBUG Processing 240/520 atomic regions from SNP 71939 to 72540 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,096 DEBUG Processing 232/349 atomic regions from SNP 69505 to 70105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,124 DEBUG Processing 241/520 atomic regions from SNP 72240 to 72841 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,288 DEBUG Processing 233/349 atomic regions from SNP 69805 to 70405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,307 DEBUG Processing 242/520 atomic regions from SNP 72541 to 73142 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,464 DEBUG Processing 234/349 atomic regions from SNP 70105 to 70705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,489 DEBUG Processing 243/520 atomic regions from SNP 72842 to 73443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,632 DEBUG Processing 235/349 atomic regions from SNP 70405 to 71005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,670 DEBUG Processing 244/520 atomic regions from SNP 73143 to 73743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,800 DEBUG Processing 236/349 atomic regions from SNP 70705 to 71305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:52,849 DEBUG Processing 245/520 atomic regions from SNP 73443 to 74043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:52,971 DEBUG Processing 237/349 atomic regions from SNP 71005 to 71605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,028 DEBUG Processing 246/520 atomic regions from SNP 73743 to 74343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,141 DEBUG Processing 238/349 atomic regions from SNP 71305 to 71905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,208 DEBUG Processing 247/520 atomic regions from SNP 74043 to 74643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,309 DEBUG Processing 239/349 atomic regions from SNP 71605 to 72205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,387 DEBUG Processing 248/520 atomic regions from SNP 74343 to 74943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,477 DEBUG Processing 240/349 atomic regions from SNP 71905 to 72505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,569 DEBUG Processing 249/520 atomic regions from SNP 74643 to 75243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,654 DEBUG Processing 241/349 atomic regions from SNP 72205 to 72805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,758 DEBUG Processing 250/520 atomic regions from SNP 74943 to 75543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:53,856 DEBUG Processing 242/349 atomic regions from SNP 72505 to 73105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:53,939 DEBUG Processing 251/520 atomic regions from SNP 75243 to 75843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,041 DEBUG Processing 243/349 atomic regions from SNP 72805 to 73405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,117 DEBUG Processing 252/520 atomic regions from SNP 75543 to 76143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,210 DEBUG Processing 244/349 atomic regions from SNP 73105 to 73705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,294 DEBUG Processing 253/520 atomic regions from SNP 75843 to 76443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,378 DEBUG Processing 245/349 atomic regions from SNP 73405 to 74005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,474 DEBUG Processing 254/520 atomic regions from SNP 76143 to 76743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,578 DEBUG Processing 246/349 atomic regions from SNP 73705 to 74305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,664 DEBUG Processing 255/520 atomic regions from SNP 76443 to 77043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,784 DEBUG Processing 247/349 atomic regions from SNP 74005 to 74605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:54,846 DEBUG Processing 256/520 atomic regions from SNP 76743 to 77343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:54,978 DEBUG Processing 248/349 atomic regions from SNP 74305 to 74905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,031 DEBUG Processing 257/520 atomic regions from SNP 77043 to 77643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,155 DEBUG Processing 249/349 atomic regions from SNP 74605 to 75205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,234 DEBUG Processing 258/520 atomic regions from SNP 77343 to 77943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,332 DEBUG Processing 250/349 atomic regions from SNP 74905 to 75505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,418 DEBUG Processing 259/520 atomic regions from SNP 77643 to 78243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,535 DEBUG Processing 251/349 atomic regions from SNP 75205 to 75805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,592 DEBUG Processing 260/520 atomic regions from SNP 77943 to 78543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,725 DEBUG Processing 252/349 atomic regions from SNP 75505 to 76105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,768 DEBUG Processing 261/520 atomic regions from SNP 78243 to 78843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:55,891 DEBUG Processing 253/349 atomic regions from SNP 75805 to 76405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:55,950 DEBUG Processing 262/520 atomic regions from SNP 78543 to 79143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,080 DEBUG Processing 254/349 atomic regions from SNP 76105 to 76705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,136 DEBUG Processing 263/520 atomic regions from SNP 78843 to 79443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,271 DEBUG Processing 255/349 atomic regions from SNP 76405 to 77005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,310 DEBUG Processing 264/520 atomic regions from SNP 79143 to 79743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,453 DEBUG Processing 256/349 atomic regions from SNP 76705 to 77305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,486 DEBUG Processing 265/520 atomic regions from SNP 79443 to 80043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,649 DEBUG Processing 257/349 atomic regions from SNP 77005 to 77605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,668 DEBUG Processing 266/520 atomic regions from SNP 79743 to 80343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:56,843 DEBUG Processing 258/349 atomic regions from SNP 77305 to 77905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:56,860 DEBUG Processing 267/520 atomic regions from SNP 80043 to 80643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,041 DEBUG Processing 268/520 atomic regions from SNP 80343 to 80943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,042 DEBUG Processing 259/349 atomic regions from SNP 77605 to 78205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,224 DEBUG Processing 269/520 atomic regions from SNP 80643 to 81243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,252 DEBUG Processing 260/349 atomic regions from SNP 77905 to 78505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,413 DEBUG Processing 270/520 atomic regions from SNP 80943 to 81543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,447 DEBUG Processing 261/349 atomic regions from SNP 78205 to 78805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,599 DEBUG Processing 271/520 atomic regions from SNP 81243 to 81843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,640 DEBUG Processing 262/349 atomic regions from SNP 78505 to 79105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,790 DEBUG Processing 272/520 atomic regions from SNP 81543 to 82143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:57,832 DEBUG Processing 263/349 atomic regions from SNP 78805 to 79405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:57,977 DEBUG Processing 273/520 atomic regions from SNP 81843 to 82443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,020 DEBUG Processing 264/349 atomic regions from SNP 79105 to 79705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,167 DEBUG Processing 274/520 atomic regions from SNP 82143 to 82743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,217 DEBUG Processing 265/349 atomic regions from SNP 79405 to 80005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,355 DEBUG Processing 275/520 atomic regions from SNP 82443 to 83043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,413 DEBUG Processing 266/349 atomic regions from SNP 79705 to 80305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,539 DEBUG Processing 276/520 atomic regions from SNP 82743 to 83343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,606 DEBUG Processing 267/349 atomic regions from SNP 80005 to 80605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,738 DEBUG Processing 277/520 atomic regions from SNP 83043 to 83643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,783 DEBUG Processing 268/349 atomic regions from SNP 80305 to 80905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:58,931 DEBUG Processing 278/520 atomic regions from SNP 83343 to 83943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:58,957 DEBUG Processing 269/349 atomic regions from SNP 80605 to 81205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,134 DEBUG Processing 279/520 atomic regions from SNP 83643 to 84243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,139 DEBUG Processing 270/349 atomic regions from SNP 80905 to 81505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,317 DEBUG Processing 271/349 atomic regions from SNP 81205 to 81805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,327 DEBUG Processing 280/520 atomic regions from SNP 83943 to 84543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,504 DEBUG Processing 272/349 atomic regions from SNP 81505 to 82105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,535 DEBUG Processing 281/520 atomic regions from SNP 84243 to 84843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,673 DEBUG Processing 273/349 atomic regions from SNP 81805 to 82405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,731 DEBUG Processing 282/520 atomic regions from SNP 84543 to 85143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:59,840 DEBUG Processing 274/349 atomic regions from SNP 82105 to 82705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:57:59,917 DEBUG Processing 283/520 atomic regions from SNP 84843 to 85443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,017 DEBUG Processing 275/349 atomic regions from SNP 82405 to 83005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,105 DEBUG Processing 284/520 atomic regions from SNP 85143 to 85743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,191 DEBUG Processing 276/349 atomic regions from SNP 82705 to 83305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,298 DEBUG Processing 285/520 atomic regions from SNP 85443 to 86043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,375 DEBUG Processing 277/349 atomic regions from SNP 83005 to 83605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,507 DEBUG Processing 286/520 atomic regions from SNP 85743 to 86343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,563 DEBUG Processing 278/349 atomic regions from SNP 83305 to 83905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,707 DEBUG Processing 287/520 atomic regions from SNP 86043 to 86643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,745 DEBUG Processing 279/349 atomic regions from SNP 83605 to 84205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:00,893 DEBUG Processing 288/520 atomic regions from SNP 86343 to 86943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:00,923 DEBUG Processing 280/349 atomic regions from SNP 83905 to 84505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,081 DEBUG Processing 289/520 atomic regions from SNP 86643 to 87243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,102 DEBUG Processing 281/349 atomic regions from SNP 84205 to 84805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,267 DEBUG Processing 290/520 atomic regions from SNP 86943 to 87543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,278 DEBUG Processing 282/349 atomic regions from SNP 84505 to 85105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,455 DEBUG Processing 291/520 atomic regions from SNP 87243 to 87843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,456 DEBUG Processing 283/349 atomic regions from SNP 84805 to 85405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,635 DEBUG Processing 284/349 atomic regions from SNP 85105 to 85705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,641 DEBUG Processing 292/520 atomic regions from SNP 87543 to 88143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,813 DEBUG Processing 285/349 atomic regions from SNP 85405 to 86005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:01,827 DEBUG Processing 293/520 atomic regions from SNP 87843 to 88443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:01,990 DEBUG Processing 286/349 atomic regions from SNP 85705 to 86305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,016 DEBUG Processing 294/520 atomic regions from SNP 88143 to 88743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,164 DEBUG Processing 287/349 atomic regions from SNP 86005 to 86605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,199 DEBUG Processing 295/520 atomic regions from SNP 88443 to 89043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,345 DEBUG Processing 288/349 atomic regions from SNP 86305 to 86905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,383 DEBUG Processing 296/520 atomic regions from SNP 88743 to 89343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,525 DEBUG Processing 289/349 atomic regions from SNP 86605 to 87205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,569 DEBUG Processing 297/520 atomic regions from SNP 89043 to 89643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,703 DEBUG Processing 290/349 atomic regions from SNP 86905 to 87505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,749 DEBUG Processing 298/520 atomic regions from SNP 89343 to 89943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:02,874 DEBUG Processing 291/349 atomic regions from SNP 87205 to 87805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:02,927 DEBUG Processing 299/520 atomic regions from SNP 89643 to 90243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,046 DEBUG Processing 292/349 atomic regions from SNP 87505 to 88105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,105 DEBUG Processing 300/520 atomic regions from SNP 89943 to 90543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,228 DEBUG Processing 293/349 atomic regions from SNP 87805 to 88405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,283 DEBUG Processing 301/520 atomic regions from SNP 90243 to 90843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,402 DEBUG Processing 294/349 atomic regions from SNP 88105 to 88705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,463 DEBUG Processing 302/520 atomic regions from SNP 90543 to 91143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,570 DEBUG Processing 295/349 atomic regions from SNP 88405 to 89005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,637 DEBUG Processing 303/520 atomic regions from SNP 90843 to 91443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,739 DEBUG Processing 296/349 atomic regions from SNP 88705 to 89305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,818 DEBUG Processing 304/520 atomic regions from SNP 91143 to 91743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:03,907 DEBUG Processing 297/349 atomic regions from SNP 89005 to 89605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:03,996 DEBUG Processing 305/520 atomic regions from SNP 91443 to 92043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,075 DEBUG Processing 298/349 atomic regions from SNP 89305 to 89905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,174 DEBUG Processing 306/520 atomic regions from SNP 91743 to 92343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,245 DEBUG Processing 299/349 atomic regions from SNP 89605 to 90205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,355 DEBUG Processing 307/520 atomic regions from SNP 92043 to 92643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,423 DEBUG Processing 300/349 atomic regions from SNP 89905 to 90505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,535 DEBUG Processing 308/520 atomic regions from SNP 92343 to 92943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,623 DEBUG Processing 301/349 atomic regions from SNP 90205 to 90805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,716 DEBUG Processing 309/520 atomic regions from SNP 92643 to 93243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,818 DEBUG Processing 302/349 atomic regions from SNP 90505 to 91105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:04,899 DEBUG Processing 310/520 atomic regions from SNP 92943 to 93543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:04,993 DEBUG Processing 303/349 atomic regions from SNP 90805 to 91405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,098 DEBUG Processing 311/520 atomic regions from SNP 93243 to 93843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,197 DEBUG Processing 304/349 atomic regions from SNP 91105 to 91705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,294 DEBUG Processing 312/520 atomic regions from SNP 93543 to 94143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,450 DEBUG Processing 305/349 atomic regions from SNP 91405 to 92005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,550 DEBUG Processing 313/520 atomic regions from SNP 93843 to 94443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,665 DEBUG Processing 306/349 atomic regions from SNP 91705 to 92305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:05,756 DEBUG Processing 314/520 atomic regions from SNP 94143 to 94743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:05,954 DEBUG Processing 307/349 atomic regions from SNP 92005 to 92605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,085 DEBUG Processing 315/520 atomic regions from SNP 94443 to 95043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,234 DEBUG Processing 308/349 atomic regions from SNP 92305 to 92905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,398 DEBUG Processing 316/520 atomic regions from SNP 94743 to 95343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,489 DEBUG Processing 309/349 atomic regions from SNP 92605 to 93205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,606 DEBUG Processing 317/520 atomic regions from SNP 95043 to 95643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,686 DEBUG Processing 310/349 atomic regions from SNP 92905 to 93505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:06,835 DEBUG Processing 318/520 atomic regions from SNP 95343 to 95943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:06,896 DEBUG Processing 311/349 atomic regions from SNP 93205 to 93805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,081 DEBUG Processing 319/520 atomic regions from SNP 95643 to 96243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,102 DEBUG Processing 312/349 atomic regions from SNP 93505 to 94105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,287 DEBUG Processing 320/520 atomic regions from SNP 95943 to 96543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,290 DEBUG Processing 313/349 atomic regions from SNP 93805 to 94405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,455 DEBUG Processing 314/349 atomic regions from SNP 94105 to 94705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,461 DEBUG Processing 321/520 atomic regions from SNP 96243 to 96843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,623 DEBUG Processing 315/349 atomic regions from SNP 94405 to 95005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,633 DEBUG Processing 322/520 atomic regions from SNP 96543 to 97143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,796 DEBUG Processing 316/349 atomic regions from SNP 94705 to 95305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,805 DEBUG Processing 323/520 atomic regions from SNP 96843 to 97443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:07,964 DEBUG Processing 317/349 atomic regions from SNP 95005 to 95605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:07,984 DEBUG Processing 324/520 atomic regions from SNP 97143 to 97743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,136 DEBUG Processing 318/349 atomic regions from SNP 95305 to 95905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,163 DEBUG Processing 325/520 atomic regions from SNP 97443 to 98043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,316 DEBUG Processing 319/349 atomic regions from SNP 95605 to 96205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,343 DEBUG Processing 326/520 atomic regions from SNP 97743 to 98343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,495 DEBUG Processing 320/349 atomic regions from SNP 95905 to 96505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,519 DEBUG Processing 327/520 atomic regions from SNP 98043 to 98643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,679 DEBUG Processing 321/349 atomic regions from SNP 96205 to 96805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,700 DEBUG Processing 328/520 atomic regions from SNP 98343 to 98943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:08,851 DEBUG Processing 322/349 atomic regions from SNP 96505 to 97105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:08,877 DEBUG Processing 329/520 atomic regions from SNP 98643 to 99243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,034 DEBUG Processing 323/349 atomic regions from SNP 96805 to 97405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,053 DEBUG Processing 330/520 atomic regions from SNP 98943 to 99543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,217 DEBUG Processing 324/349 atomic regions from SNP 97105 to 97705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,238 DEBUG Processing 331/520 atomic regions from SNP 99243 to 99843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,440 DEBUG Processing 325/349 atomic regions from SNP 97405 to 98005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,460 DEBUG Processing 332/520 atomic regions from SNP 99543 to 100143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,724 DEBUG Processing 326/349 atomic regions from SNP 97705 to 98305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:09,769 DEBUG Processing 333/520 atomic regions from SNP 99843 to 100443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:09,983 DEBUG Processing 327/349 atomic regions from SNP 98005 to 98605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,017 DEBUG Processing 334/520 atomic regions from SNP 100143 to 100743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,190 DEBUG Processing 328/349 atomic regions from SNP 98305 to 98905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,223 DEBUG Processing 335/520 atomic regions from SNP 100443 to 101043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,382 DEBUG Processing 329/349 atomic regions from SNP 98605 to 99205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,412 DEBUG Processing 336/520 atomic regions from SNP 100743 to 101343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,634 DEBUG Processing 330/349 atomic regions from SNP 98905 to 99505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,664 DEBUG Processing 337/520 atomic regions from SNP 101043 to 101643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:10,897 DEBUG Processing 331/349 atomic regions from SNP 99205 to 99805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:10,970 DEBUG Processing 338/520 atomic regions from SNP 101343 to 101943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,191 DEBUG Processing 332/349 atomic regions from SNP 99505 to 100105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,250 DEBUG Processing 339/520 atomic regions from SNP 101643 to 102243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,416 DEBUG Processing 333/349 atomic regions from SNP 99805 to 100405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,511 DEBUG Processing 340/520 atomic regions from SNP 101943 to 102543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,697 DEBUG Processing 334/349 atomic regions from SNP 100105 to 100705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:11,810 DEBUG Processing 341/520 atomic regions from SNP 102243 to 102843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:11,992 DEBUG Processing 335/349 atomic regions from SNP 100405 to 101005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,098 DEBUG Processing 342/520 atomic regions from SNP 102543 to 103143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,289 DEBUG Processing 336/349 atomic regions from SNP 100705 to 101305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,417 DEBUG Processing 343/520 atomic regions from SNP 102843 to 103443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,505 DEBUG Processing 337/349 atomic regions from SNP 101005 to 101605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,638 DEBUG Processing 344/520 atomic regions from SNP 103143 to 103743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:12,694 DEBUG Processing 338/349 atomic regions from SNP 101305 to 101905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,890 DEBUG Processing 339/349 atomic regions from SNP 101605 to 102205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:12,896 DEBUG Processing 345/520 atomic regions from SNP 103443 to 104043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,074 DEBUG Processing 340/349 atomic regions from SNP 101905 to 102505 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,120 DEBUG Processing 346/520 atomic regions from SNP 103743 to 104343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,251 DEBUG Processing 341/349 atomic regions from SNP 102205 to 102805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,332 DEBUG Processing 347/520 atomic regions from SNP 104043 to 104643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,428 DEBUG Processing 342/349 atomic regions from SNP 102505 to 103105 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,551 DEBUG Processing 348/520 atomic regions from SNP 104343 to 104943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,609 DEBUG Processing 343/349 atomic regions from SNP 102805 to 103405 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,762 DEBUG Processing 349/520 atomic regions from SNP 104643 to 105243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,797 DEBUG Processing 344/349 atomic regions from SNP 103105 to 103705 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:13,964 DEBUG Processing 350/520 atomic regions from SNP 104943 to 105543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:13,982 DEBUG Processing 345/349 atomic regions from SNP 103405 to 104005 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,156 DEBUG Processing 346/349 atomic regions from SNP 103705 to 104305 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,157 DEBUG Processing 351/520 atomic regions from SNP 105243 to 105843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,329 DEBUG Processing 347/349 atomic regions from SNP 104005 to 104605 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,342 DEBUG Processing 352/520 atomic regions from SNP 105543 to 106143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,513 DEBUG Processing 348/349 atomic regions from SNP 104305 to 104905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,527 DEBUG Processing 353/520 atomic regions from SNP 105843 to 106443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,703 DEBUG Processing 349/349 atomic regions from SNP 104605 to 105205 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:14,731 DEBUG Processing 354/520 atomic regions from SNP 106143 to 106743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:14,846 DEBUG Unique SNPs positions in subchromosome 1: 105206 2025-01-31 09:58:14,913 DEBUG Processing 355/520 atomic regions from SNP 106443 to 107043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,091 DEBUG Processing 356/520 atomic regions from SNP 106743 to 107343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,269 DEBUG Processing 357/520 atomic regions from SNP 107043 to 107643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,445 DEBUG Processing 358/520 atomic regions from SNP 107343 to 107943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,619 DEBUG Processing 359/520 atomic regions from SNP 107643 to 108243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,795 DEBUG Processing 360/520 atomic regions from SNP 107943 to 108543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:15,992 DEBUG Processing 361/520 atomic regions from SNP 108243 to 108843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,081 DEBUG Subchromosome time: 76.92729245126247, subchromosome SNPs: 105206 2025-01-31 09:58:16,081 DEBUG Estimated BADs: [4.30, 0.72, 2.86, 0.72, 1.43, 0.72, 1.43, 0.48, 1.43, 2.86, 0.36, 1.43] SNP counts: [8024, 1089, 4527, 7829, 3615, 9324, 19867, 3885, 10547, 14398, 4795, 17306] SNP IDs counts: [8024, 1089, 4527, 7829, 3615, 9324, 19867, 3885, 10547, 14398, 4795, 17306] Critical gap: 412058bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.50Mbp, 8.22Mbp, 11.00Mbp, 15.49Mbp, 17.44Mbp, 22.64Mbp, 33.36Mbp, 35.68Mbp, 41.59Mbp, 49.26Mbp, 52.02Mbp, 61.43Mbp] 2025-01-31 09:58:16,081 DEBUG chr19 time: 76.92771720141172 s 2025-01-31 09:58:16,145 DEBUG chr19: Fitting background model for 12 segments 2025-01-31 09:58:16,173 DEBUG Processing 362/520 atomic regions from SNP 108543 to 109143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,349 DEBUG Processing 363/520 atomic regions from SNP 108843 to 109443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,530 DEBUG Processing 364/520 atomic regions from SNP 109143 to 109743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,711 DEBUG Processing 365/520 atomic regions from SNP 109443 to 110043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:16,918 DEBUG Processing 366/520 atomic regions from SNP 109743 to 110343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,108 DEBUG Processing 367/520 atomic regions from SNP 110043 to 110643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,286 DEBUG Processing 368/520 atomic regions from SNP 110343 to 110943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,461 DEBUG Processing 369/520 atomic regions from SNP 110643 to 111243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,635 DEBUG Processing 370/520 atomic regions from SNP 110943 to 111543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:17,813 DEBUG Processing 371/520 atomic regions from SNP 111243 to 111843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,004 DEBUG Processing 372/520 atomic regions from SNP 111543 to 112143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,184 DEBUG Processing 373/520 atomic regions from SNP 111843 to 112443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,371 DEBUG Processing 374/520 atomic regions from SNP 112143 to 112743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,553 DEBUG Processing 375/520 atomic regions from SNP 112443 to 113043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,731 DEBUG Processing 376/520 atomic regions from SNP 112743 to 113343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:18,910 DEBUG Processing 377/520 atomic regions from SNP 113043 to 113643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,097 DEBUG Processing 378/520 atomic regions from SNP 113343 to 113943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,278 DEBUG Processing 379/520 atomic regions from SNP 113643 to 114243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,455 DEBUG Processing 380/520 atomic regions from SNP 113943 to 114543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,634 DEBUG Processing 381/520 atomic regions from SNP 114243 to 114843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:19,821 DEBUG Processing 382/520 atomic regions from SNP 114543 to 115143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,030 DEBUG Processing 383/520 atomic regions from SNP 114843 to 115443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,244 DEBUG Processing 384/520 atomic regions from SNP 115143 to 115743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,455 DEBUG Processing 385/520 atomic regions from SNP 115443 to 116043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,669 DEBUG Processing 386/520 atomic regions from SNP 115743 to 116343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:20,871 DEBUG Processing 387/520 atomic regions from SNP 116043 to 116643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,055 DEBUG Processing 388/520 atomic regions from SNP 116343 to 116943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,239 DEBUG Processing 389/520 atomic regions from SNP 116643 to 117243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,418 DEBUG Processing 390/520 atomic regions from SNP 116943 to 117543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,596 DEBUG Processing 391/520 atomic regions from SNP 117243 to 117843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,780 DEBUG Processing 392/520 atomic regions from SNP 117543 to 118143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:21,962 DEBUG Processing 393/520 atomic regions from SNP 117843 to 118443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,147 DEBUG Processing 394/520 atomic regions from SNP 118143 to 118743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,327 DEBUG Processing 395/520 atomic regions from SNP 118443 to 119043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,506 DEBUG Processing 396/520 atomic regions from SNP 118743 to 119343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,687 DEBUG Processing 397/520 atomic regions from SNP 119043 to 119643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:22,871 DEBUG Processing 398/520 atomic regions from SNP 119343 to 119943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,050 DEBUG Processing 399/520 atomic regions from SNP 119643 to 120243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,230 DEBUG Processing 400/520 atomic regions from SNP 119943 to 120543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,408 DEBUG Processing 401/520 atomic regions from SNP 120243 to 120843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,586 DEBUG Processing 402/520 atomic regions from SNP 120543 to 121143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,773 DEBUG Processing 403/520 atomic regions from SNP 120843 to 121443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:23,967 DEBUG Processing 404/520 atomic regions from SNP 121143 to 121743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,145 DEBUG Processing 405/520 atomic regions from SNP 121443 to 122043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,321 DEBUG Processing 406/520 atomic regions from SNP 121743 to 122343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,497 DEBUG Processing 407/520 atomic regions from SNP 122043 to 122643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,672 DEBUG Processing 408/520 atomic regions from SNP 122343 to 122943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:24,851 DEBUG Processing 409/520 atomic regions from SNP 122643 to 123243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,028 DEBUG Processing 410/520 atomic regions from SNP 122943 to 123543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,210 DEBUG Processing 411/520 atomic regions from SNP 123243 to 123843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,384 DEBUG Processing 412/520 atomic regions from SNP 123543 to 124143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,561 DEBUG Processing 413/520 atomic regions from SNP 123843 to 124443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,742 DEBUG Processing 414/520 atomic regions from SNP 124143 to 124743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:25,921 DEBUG Processing 415/520 atomic regions from SNP 124443 to 125043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,101 DEBUG Processing 416/520 atomic regions from SNP 124743 to 125343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,280 DEBUG Processing 417/520 atomic regions from SNP 125043 to 125643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,461 DEBUG Processing 418/520 atomic regions from SNP 125343 to 125943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,642 DEBUG Processing 419/520 atomic regions from SNP 125643 to 126243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:26,825 DEBUG Processing 420/520 atomic regions from SNP 125943 to 126543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,001 DEBUG Processing 421/520 atomic regions from SNP 126243 to 126843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,191 DEBUG Processing 422/520 atomic regions from SNP 126543 to 127143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,398 DEBUG Processing 423/520 atomic regions from SNP 126843 to 127443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,580 DEBUG Processing 424/520 atomic regions from SNP 127143 to 127743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,762 DEBUG Processing 425/520 atomic regions from SNP 127443 to 128043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:27,947 DEBUG Processing 426/520 atomic regions from SNP 127743 to 128343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,126 DEBUG Processing 427/520 atomic regions from SNP 128043 to 128643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,323 DEBUG Processing 428/520 atomic regions from SNP 128343 to 128943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,554 DEBUG Processing 429/520 atomic regions from SNP 128643 to 129243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,794 DEBUG Processing 430/520 atomic regions from SNP 128943 to 129543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:28,979 DEBUG Processing 431/520 atomic regions from SNP 129243 to 129843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,174 DEBUG Processing 432/520 atomic regions from SNP 129543 to 130143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,378 DEBUG Processing 433/520 atomic regions from SNP 129843 to 130443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,594 DEBUG Processing 434/520 atomic regions from SNP 130143 to 130743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:29,816 DEBUG Processing 435/520 atomic regions from SNP 130443 to 131043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,065 DEBUG Processing 436/520 atomic regions from SNP 130743 to 131343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,330 DEBUG Processing 437/520 atomic regions from SNP 131043 to 131643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,580 DEBUG Processing 438/520 atomic regions from SNP 131343 to 131943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:30,822 DEBUG Processing 439/520 atomic regions from SNP 131643 to 132243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,105 DEBUG Processing 440/520 atomic regions from SNP 131943 to 132543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,380 DEBUG Processing 441/520 atomic regions from SNP 132243 to 132843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,655 DEBUG Processing 442/520 atomic regions from SNP 132543 to 133143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:31,932 DEBUG Processing 443/520 atomic regions from SNP 132843 to 133443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,196 DEBUG Processing 444/520 atomic regions from SNP 133143 to 133743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,478 DEBUG Processing 445/520 atomic regions from SNP 133443 to 134043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:32,769 DEBUG Processing 446/520 atomic regions from SNP 133743 to 134343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,074 DEBUG Processing 447/520 atomic regions from SNP 134043 to 134643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,336 DEBUG Processing 448/520 atomic regions from SNP 134343 to 134943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,600 DEBUG Processing 449/520 atomic regions from SNP 134643 to 135243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:33,879 DEBUG Processing 450/520 atomic regions from SNP 134943 to 135543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,151 DEBUG Processing 451/520 atomic regions from SNP 135243 to 135843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,424 DEBUG Processing 452/520 atomic regions from SNP 135543 to 136143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,688 DEBUG Processing 453/520 atomic regions from SNP 135843 to 136443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:34,948 DEBUG Processing 454/520 atomic regions from SNP 136143 to 136743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,196 DEBUG Processing 455/520 atomic regions from SNP 136443 to 137043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,405 DEBUG Processing 456/520 atomic regions from SNP 136743 to 137343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,660 DEBUG Processing 457/520 atomic regions from SNP 137043 to 137643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:35,909 DEBUG Processing 458/520 atomic regions from SNP 137343 to 137943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,158 DEBUG Processing 459/520 atomic regions from SNP 137643 to 138243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,421 DEBUG Processing 460/520 atomic regions from SNP 137943 to 138543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:36,728 DEBUG Processing 461/520 atomic regions from SNP 138243 to 138843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,013 DEBUG Processing 462/520 atomic regions from SNP 138543 to 139143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,258 DEBUG Processing 463/520 atomic regions from SNP 138843 to 139443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,448 DEBUG Processing 464/520 atomic regions from SNP 139143 to 139743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,679 DEBUG Processing 465/520 atomic regions from SNP 139443 to 140043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:37,891 DEBUG Processing 466/520 atomic regions from SNP 139743 to 140343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,129 DEBUG Processing 467/520 atomic regions from SNP 140043 to 140643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,391 DEBUG Processing 468/520 atomic regions from SNP 140343 to 140943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,644 DEBUG Processing 469/520 atomic regions from SNP 140643 to 141243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:38,825 DEBUG Processing 470/520 atomic regions from SNP 140943 to 141543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,065 DEBUG Processing 471/520 atomic regions from SNP 141243 to 141843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,296 DEBUG Processing 472/520 atomic regions from SNP 141543 to 142143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,541 DEBUG Processing 473/520 atomic regions from SNP 141843 to 142443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:39,793 DEBUG Processing 474/520 atomic regions from SNP 142143 to 142743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,055 DEBUG Processing 475/520 atomic regions from SNP 142443 to 143043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,297 DEBUG Processing 476/520 atomic regions from SNP 142743 to 143343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,485 DEBUG Processing 477/520 atomic regions from SNP 143043 to 143643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,698 DEBUG Processing 478/520 atomic regions from SNP 143343 to 143943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:40,937 DEBUG Processing 479/520 atomic regions from SNP 143643 to 144243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,194 DEBUG Processing 480/520 atomic regions from SNP 143943 to 144543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,400 DEBUG Processing 481/520 atomic regions from SNP 144243 to 144843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,639 DEBUG Processing 482/520 atomic regions from SNP 144543 to 145143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:41,878 DEBUG Processing 483/520 atomic regions from SNP 144843 to 145443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,126 DEBUG Processing 484/520 atomic regions from SNP 145143 to 145743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,377 DEBUG Processing 485/520 atomic regions from SNP 145443 to 146043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,632 DEBUG Processing 486/520 atomic regions from SNP 145743 to 146343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:42,916 DEBUG Processing 487/520 atomic regions from SNP 146043 to 146643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,208 DEBUG Processing 488/520 atomic regions from SNP 146343 to 146943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,455 DEBUG Processing 489/520 atomic regions from SNP 146643 to 147243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:43,713 DEBUG Processing 490/520 atomic regions from SNP 146943 to 147543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,004 DEBUG Processing 491/520 atomic regions from SNP 147243 to 147843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,359 DEBUG Processing 492/520 atomic regions from SNP 147543 to 148143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,655 DEBUG Processing 493/520 atomic regions from SNP 147843 to 148443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:44,933 DEBUG Processing 494/520 atomic regions from SNP 148143 to 148743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,202 DEBUG Processing 495/520 atomic regions from SNP 148443 to 149043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,487 DEBUG Processing 496/520 atomic regions from SNP 148743 to 149343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,679 DEBUG Processing 497/520 atomic regions from SNP 149043 to 149643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:45,889 DEBUG Processing 498/520 atomic regions from SNP 149343 to 149943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,134 DEBUG Processing 499/520 atomic regions from SNP 149643 to 150243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,391 DEBUG Processing 500/520 atomic regions from SNP 149943 to 150543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,603 DEBUG Processing 501/520 atomic regions from SNP 150243 to 150843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,797 DEBUG Processing 502/520 atomic regions from SNP 150543 to 151143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:46,976 DEBUG Processing 503/520 atomic regions from SNP 150843 to 151443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,159 DEBUG Processing 504/520 atomic regions from SNP 151143 to 151743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,385 DEBUG Processing 505/520 atomic regions from SNP 151443 to 152043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,607 DEBUG Processing 506/520 atomic regions from SNP 151743 to 152343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:47,837 DEBUG Processing 507/520 atomic regions from SNP 152043 to 152643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,047 DEBUG Processing 508/520 atomic regions from SNP 152343 to 152943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,246 DEBUG Processing 509/520 atomic regions from SNP 152643 to 153243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,421 DEBUG Processing 510/520 atomic regions from SNP 152943 to 153543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,594 DEBUG Processing 511/520 atomic regions from SNP 153243 to 153843 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,763 DEBUG Processing 512/520 atomic regions from SNP 153543 to 154143 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:48,933 DEBUG Processing 513/520 atomic regions from SNP 153843 to 154443 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,103 DEBUG Processing 514/520 atomic regions from SNP 154143 to 154743 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,277 DEBUG Processing 515/520 atomic regions from SNP 154443 to 155043 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,452 DEBUG Processing 516/520 atomic regions from SNP 154743 to 155343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,627 DEBUG Processing 517/520 atomic regions from SNP 155043 to 155643 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,799 DEBUG Processing 518/520 atomic regions from SNP 155343 to 155943 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:49,970 DEBUG Processing 519/520 atomic regions from SNP 155643 to 156243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,141 DEBUG Processing 520/520 atomic regions from SNP 155943 to 156543 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:50,249 DEBUG Unique SNPs positions in subchromosome 1: 156544 2025-01-31 09:58:51,248 DEBUG Subchromosome time: 120.81269210204482, subchromosome SNPs: 156544 2025-01-31 09:58:51,248 DEBUG Estimated BADs: [1.19, 0.30, 1.19, 0.40, 1.19, 3.56, 1.19, 3.56, 1.19, 2.37, 1.19, 0.40] SNP counts: [25675, 3009, 13845, 6632, 5987, 4737, 42359, 2196, 22094, 7910, 14991, 7109] SNP IDs counts: [25675, 3009, 13845, 6632, 5987, 4737, 42359, 2196, 22094, 7910, 14991, 7109] Critical gap: 508330bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 17.61Mbp, 19.43Mbp, 27.22Mbp, 31.00Mbp, 34.33Mbp, 36.80Mbp, 60.48Mbp, 61.63Mbp, 73.70Mbp, 78.01Mbp, 86.31Mbp, 90.70Mbp] 2025-01-31 09:58:51,248 DEBUG chr18 time: 120.81311844289303 s 2025-01-31 09:58:51,330 DEBUG chr18: Fitting background model for 12 segments 2025-01-31 09:58:59,525 DEBUG Results of fit_background_model emitted. 2025-01-31 09:58:59,628 INFO Signal to noise fit: SPOT=0.23±0.12 2025-01-31 09:58:59,633 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 09:58:59,674 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:59,675 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:59:04,693 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 09:59:06,423 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:59:06,491 INFO Signal to noise fit: SPOT=0.23±0.12 2025-01-31 09:59:06,496 INFO Found 1 outlier SPOT score segments at iteration 2. Refitting with approximated signal/noise constraint. 2025-01-31 09:59:06,533 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:59:06,533 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:59:10,537 DEBUG chr10: Fitting background model for 1 segments 2025-01-31 09:59:10,795 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:59:10,862 INFO Signal to noise fit: SPOT=0.23±0.12 2025-01-31 09:59:10,867 INFO Final SPOT score: 0.23±0.12. Refitted 2 segments. 2025-01-31 09:59:10,908 INFO Estimating per-bp parameters of background model 2025-01-31 09:59:10,914 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:59:10,914 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:59:17,883 DEBUG chr5:3002500-5884501: Successfully fit background model for 2,528,540 bp. Use segment r for 0 bp 2025-01-31 09:59:18,622 DEBUG chr4:3050000-8630751: Successfully fit background model for 4,709,946 bp. Use segment r for 0 bp 2025-01-31 09:59:18,879 DEBUG chr3:3000000-8575501: Successfully fit background model for 4,809,947 bp. Use segment r for 0 bp 2025-01-31 09:59:19,043 DEBUG chr3:8575501-10097251: Successfully fit background model for 1,395,337 bp. Use segment r for 0 bp 2025-01-31 09:59:19,504 DEBUG chrX:3058000-7553251: Successfully fit background model for 2,006,734 bp. Use segment r for 0 bp 2025-01-31 09:59:19,517 DEBUG chr2:3051000-7537751: Successfully fit background model for 4,221,728 bp. Use segment r for 0 bp 2025-01-31 09:59:19,554 DEBUG chrX:7553251-7924751: Successfully fit background model for 363,021 bp. Use segment r for 0 bp 2025-01-31 09:59:19,650 DEBUG chr4:8630751-16235251: Successfully fit background model for 6,864,448 bp. Use segment r for 0 bp 2025-01-31 09:59:20,327 DEBUG chrX:7924751-14279751: Successfully fit background model for 5,596,357 bp. Use segment r for 0 bp 2025-01-31 09:59:20,389 DEBUG chr3:10097251-19147751: Successfully fit background model for 7,629,864 bp. Use segment r for 0 bp 2025-01-31 09:59:20,486 DEBUG chrX:14279751-15901751: Successfully fit background model for 1,400,446 bp. Use segment r for 0 bp 2025-01-31 09:59:20,503 DEBUG chr3:19147751-20032001: Successfully fit background model for 812,309 bp. Use segment r for 0 bp 2025-01-31 09:59:21,058 DEBUG chr2:7537751-18025751: Successfully fit background model for 9,481,235 bp. Use segment r for 0 bp 2025-01-31 09:59:21,201 DEBUG chr5:5884501-20879251: Successfully fit background model for 11,953,518 bp. Use segment r for 2,852 bp 2025-01-31 09:59:21,554 DEBUG chr5:20879251-24314251: Successfully fit background model for 3,163,810 bp. Use segment r for 0 bp 2025-01-31 09:59:21,667 DEBUG chr3:20032001-28672251: Successfully fit background model for 7,673,062 bp. Use segment r for 0 bp 2025-01-31 09:59:21,691 DEBUG chr5:24314251-25541251: Successfully fit background model for 1,176,809 bp. Use segment r for 0 bp 2025-01-31 09:59:21,781 DEBUG chr2:18025751-24916751: Successfully fit background model for 6,141,200 bp. Use segment r for 0 bp 2025-01-31 09:59:21,932 DEBUG chr4:16235251-32560751: Successfully fit background model for 14,469,413 bp. Use segment r for 0 bp 2025-01-31 09:59:22,166 DEBUG chr4:32560751-34652751: Successfully fit background model for 1,964,391 bp. Use segment r for 0 bp 2025-01-31 09:59:22,173 DEBUG chr5:25541251-30271251: Successfully fit background model for 4,230,394 bp. Use segment r for 0 bp 2025-01-31 09:59:22,443 DEBUG chr3:28672251-35917751: Successfully fit background model for 6,620,455 bp. Use segment r for 0 bp 2025-01-31 09:59:22,551 DEBUG chrX:15901751-26915001: Successfully fit background model for 7,613,643 bp. Use segment r for 1,367 bp 2025-01-31 09:59:22,556 DEBUG chr2:24916751-32872251: Successfully fit background model for 7,714,787 bp. Use segment r for 0 bp 2025-01-31 09:59:22,840 DEBUG chr4:34652751-40130251: Successfully fit background model for 4,884,458 bp. Use segment r for 0 bp 2025-01-31 09:59:22,913 DEBUG chr2:32872251-36241751: Successfully fit background model for 3,289,373 bp. Use segment r for 0 bp 2025-01-31 09:59:23,002 DEBUG chr2:36241751-37086751: Successfully fit background model for 705,492 bp. Use segment r for 0 bp 2025-01-31 09:59:23,015 DEBUG chr4:40130251-41857501: Successfully fit background model for 1,566,855 bp. Use segment r for 0 bp 2025-01-31 09:59:23,194 DEBUG chr1:3000500-33448251: Successfully fit background model for 27,085,854 bp. Use segment r for 0 bp 2025-01-31 09:59:23,230 DEBUG chr2:37086751-39374251: Successfully fit background model for 2,143,067 bp. Use segment r for 0 bp 2025-01-31 09:59:23,278 DEBUG chr5:30271251-39377751: Successfully fit background model for 8,625,782 bp. Use segment r for 0 bp 2025-01-31 09:59:23,379 DEBUG chrX:31132500-39060501: Successfully fit background model for 2,954,317 bp. Use segment r for 0 bp 2025-01-31 09:59:23,623 DEBUG chr2:39374251-43241501: Successfully fit background model for 3,503,158 bp. Use segment r for 0 bp 2025-01-31 09:59:23,658 DEBUG chr4:42706000-48771751: Successfully fit background model for 5,755,694 bp. Use segment r for 0 bp 2025-01-31 09:59:23,847 DEBUG chr1:33448251-39481251: Successfully fit background model for 5,760,067 bp. Use segment r for 0 bp 2025-01-31 09:59:23,949 DEBUG chr5:39377751-46351251: Successfully fit background model for 6,270,748 bp. Use segment r for 0 bp 2025-01-31 09:59:23,963 DEBUG chr4:48771751-51829751: Successfully fit background model for 2,693,677 bp. Use segment r for 0 bp 2025-01-31 09:59:24,085 DEBUG chr3:35917751-50577251: Successfully fit background model for 13,170,579 bp. Use segment r for 0 bp 2025-01-31 09:59:24,178 DEBUG chrX:39060501-47985751: Successfully fit background model for 7,703,274 bp. Use segment r for 0 bp 2025-01-31 09:59:24,230 DEBUG chr3:50577251-51762251: Successfully fit background model for 1,083,102 bp. Use segment r for 0 bp 2025-01-31 09:59:24,240 DEBUG chrX:47985751-48356251: Successfully fit background model for 362,803 bp. Use segment r for 0 bp 2025-01-31 09:59:24,432 DEBUG chr5:46351251-50992751: Successfully fit background model for 4,265,026 bp. Use segment r for 0 bp 2025-01-31 09:59:24,493 DEBUG chrX:48356251-50549251: Successfully fit background model for 1,851,439 bp. Use segment r for 0 bp 2025-01-31 09:59:24,509 DEBUG chrX:50549251-50635751: Successfully fit background model for 78,897 bp. Use segment r for 0 bp 2025-01-31 09:59:24,655 DEBUG chr1:39481251-47493751: Successfully fit background model for 7,262,420 bp. Use segment r for 0 bp 2025-01-31 09:59:24,824 DEBUG chr5:50992751-54389251: Successfully fit background model for 3,250,234 bp. Use segment r for 0 bp 2025-01-31 09:59:25,058 DEBUG chr1:47493751-51900751: Successfully fit background model for 3,926,663 bp. Use segment r for 0 bp 2025-01-31 09:59:26,029 DEBUG chr5:54389251-63407251: Successfully fit background model for 7,975,398 bp. Use segment r for 0 bp 2025-01-31 09:59:26,524 DEBUG chr5:63407251-68470001: Successfully fit background model for 4,778,537 bp. Use segment r for 0 bp 2025-01-31 09:59:26,820 DEBUG chr5:68470001-71588251: Successfully fit background model for 2,739,812 bp. Use segment r for 0 bp 2025-01-31 09:59:26,872 DEBUG chr4:51829751-64312251: Successfully fit background model for 10,060,330 bp. Use segment r for 1,192 bp 2025-01-31 09:59:27,249 DEBUG chr3:51762251-70967251: Successfully fit background model for 17,385,856 bp. Use segment r for 0 bp 2025-01-31 09:59:27,458 DEBUG chr2:43241501-67727251: Successfully fit background model for 22,541,019 bp. Use segment r for 0 bp 2025-01-31 09:59:27,518 DEBUG chr5:71588251-77950501: Successfully fit background model for 6,023,682 bp. Use segment r for 0 bp 2025-01-31 09:59:28,203 DEBUG chr3:70967251-79477751: Successfully fit background model for 7,581,396 bp. Use segment r for 0 bp 2025-01-31 09:59:28,299 DEBUG chr1:51900751-73900501: Successfully fit background model for 20,436,327 bp. Use segment r for 0 bp 2025-01-31 09:59:28,448 DEBUG chr1:73900501-75088751: Successfully fit background model for 1,124,226 bp. Use segment r for 0 bp 2025-01-31 09:59:28,495 DEBUG chr1:75088751-75376751: Successfully fit background model for 252,685 bp. Use segment r for 0 bp 2025-01-31 09:59:28,623 DEBUG chr5:77950501-88028251: Successfully fit background model for 8,995,948 bp. Use segment r for 0 bp 2025-01-31 09:59:28,689 DEBUG chr3:79477751-84135251: Successfully fit background model for 4,297,524 bp. Use segment r for 0 bp 2025-01-31 09:59:29,048 DEBUG chr3:84135251-87724751: Successfully fit background model for 3,416,093 bp. Use segment r for 0 bp 2025-01-31 09:59:29,098 DEBUG chr4:64312251-80511251: Successfully fit background model for 14,345,988 bp. Use segment r for 0 bp 2025-01-31 09:59:29,331 DEBUG chr3:87724751-90374251: Successfully fit background model for 2,514,702 bp. Use segment r for 0 bp 2025-01-31 09:59:29,334 DEBUG chr2:67727251-81014251: Successfully fit background model for 12,658,544 bp. Use segment r for 0 bp 2025-01-31 09:59:29,572 DEBUG chr2:81014251-83157751: Successfully fit background model for 1,875,396 bp. Use segment r for 0 bp 2025-01-31 09:59:29,610 DEBUG chrX:50635751-73031751: Successfully fit background model for 18,299,130 bp. Use segment r for 37 bp 2025-01-31 09:59:29,737 DEBUG chr2:83157751-84657751: Successfully fit background model for 1,226,963 bp. Use segment r for 0 bp 2025-01-31 09:59:29,738 DEBUG chr3:90374251-94309251: Successfully fit background model for 3,024,597 bp. Use segment r for 0 bp 2025-01-31 09:59:29,769 DEBUG chr1:75376751-84981751: Successfully fit background model for 8,847,083 bp. Use segment r for 0 bp 2025-01-31 09:59:29,773 DEBUG chrX:73031751-74219251: Successfully fit background model for 974,056 bp. Use segment r for 0 bp 2025-01-31 09:59:29,813 DEBUG chr2:84657751-85320751: Successfully fit background model for 625,398 bp. Use segment r for 0 bp 2025-01-31 09:59:29,922 DEBUG chr1:84981751-86347751: Successfully fit background model for 850,593 bp. Use segment r for 0 bp 2025-01-31 09:59:29,954 DEBUG chr1:86347751-86552751: Successfully fit background model for 199,934 bp. Use segment r for 0 bp 2025-01-31 09:59:29,984 DEBUG chr3:94309251-96722251: Successfully fit background model for 2,211,404 bp. Use segment r for 0 bp 2025-01-31 09:59:29,995 DEBUG chr4:80511251-89683251: Successfully fit background model for 8,356,902 bp. Use segment r for 0 bp 2025-01-31 09:59:30,250 DEBUG chr2:85320751-89595251: Successfully fit background model for 3,735,518 bp. Use segment r for 0 bp 2025-01-31 09:59:30,327 DEBUG chr4:89683251-92974751: Successfully fit background model for 2,882,740 bp. Use segment r for 0 bp 2025-01-31 09:59:30,351 DEBUG chr3:96722251-100388251: Successfully fit background model for 3,235,589 bp. Use segment r for 0 bp 2025-01-31 09:59:30,391 DEBUG chr2:89595251-90865751: Successfully fit background model for 953,824 bp. Use segment r for 0 bp 2025-01-31 09:59:30,670 DEBUG chr1:86552751-93678251: Successfully fit background model for 6,839,281 bp. Use segment r for 0 bp 2025-01-31 09:59:30,819 DEBUG chr2:90865751-94811751: Successfully fit background model for 3,822,339 bp. Use segment r for 0 bp 2025-01-31 09:59:30,846 DEBUG chr1:93678251-95378751: Successfully fit background model for 1,394,104 bp. Use segment r for 0 bp 2025-01-31 09:59:30,867 DEBUG chrX:74219251-83769251: Successfully fit background model for 7,821,565 bp. Use segment r for 0 bp 2025-01-31 09:59:31,074 DEBUG chr4:92974751-100985251: Successfully fit background model for 7,366,557 bp. Use segment r for 0 bp 2025-01-31 09:59:31,339 DEBUG chr3:100388251-108779251: Successfully fit background model for 7,958,623 bp. Use segment r for 0 bp 2025-01-31 09:59:31,370 DEBUG chr5:88028251-103554751: Successfully fit background model for 12,376,180 bp. Use segment r for 920 bp 2025-01-31 09:59:31,409 DEBUG chr2:94811751-100837251: Successfully fit background model for 5,005,973 bp. Use segment r for 0 bp 2025-01-31 09:59:31,456 DEBUG chr5:103554751-104093251: Successfully fit background model for 512,380 bp. Use segment r for 0 bp 2025-01-31 09:59:31,635 DEBUG chr4:100985251-106702751: Successfully fit background model for 5,383,046 bp. Use segment r for 0 bp 2025-01-31 09:59:31,772 DEBUG chrX:83769251-91994251: Successfully fit background model for 7,061,940 bp. Use segment r for 0 bp 2025-01-31 09:59:31,795 DEBUG chrX:91994251-92045751: Successfully fit background model for 31,502 bp. Use segment r for 0 bp 2025-01-31 09:59:31,883 DEBUG chr1:95378751-104283251: Successfully fit background model for 7,808,918 bp. Use segment r for 0 bp 2025-01-31 09:59:32,007 DEBUG chr4:106702751-110404251: Successfully fit background model for 3,512,397 bp. Use segment r for 0 bp 2025-01-31 09:59:32,077 DEBUG chr3:108779251-115684251: Successfully fit background model for 5,940,025 bp. Use segment r for 0 bp 2025-01-31 09:59:32,104 DEBUG chr5:104093251-110094251: Successfully fit background model for 5,341,880 bp. Use segment r for 0 bp 2025-01-31 09:59:32,158 DEBUG chr2:100837251-108042751: Successfully fit background model for 6,804,229 bp. Use segment r for 0 bp 2025-01-31 09:59:32,168 DEBUG chr4:110404251-111900751: Successfully fit background model for 1,318,999 bp. Use segment r for 0 bp 2025-01-31 09:59:32,196 DEBUG chr3:115684251-116655751: Successfully fit background model for 933,295 bp. Use segment r for 0 bp 2025-01-31 09:59:32,260 DEBUG chr1:104283251-108026251: Successfully fit background model for 3,409,577 bp. Use segment r for 0 bp 2025-01-31 09:59:32,487 DEBUG chr4:111900751-113932501: Successfully fit background model for 1,771,280 bp. Use segment r for 1,218 bp 2025-01-31 09:59:32,518 DEBUG chrX:92045751-98996251: Successfully fit background model for 5,879,956 bp. Use segment r for 0 bp 2025-01-31 09:59:32,664 DEBUG chr3:116655751-121146751: Successfully fit background model for 4,149,535 bp. Use segment r for 0 bp 2025-01-31 09:59:32,708 DEBUG chr4:113932501-115819751: Successfully fit background model for 1,622,746 bp. Use segment r for 0 bp 2025-01-31 09:59:32,794 DEBUG chr3:121146751-122268751: Successfully fit background model for 1,094,482 bp. Use segment r for 0 bp 2025-01-31 09:59:33,230 DEBUG chrX:98996251-106010751: Successfully fit background model for 6,310,977 bp. Use segment r for 0 bp 2025-01-31 09:59:33,254 DEBUG chr5:110094251-120430751: Successfully fit background model for 10,094,003 bp. Use segment r for 0 bp 2025-01-31 09:59:33,320 DEBUG chr2:108042751-118654251: Successfully fit background model for 9,705,861 bp. Use segment r for 0 bp 2025-01-31 09:59:33,351 DEBUG chr3:122268751-127241751: Successfully fit background model for 4,624,073 bp. Use segment r for 0 bp 2025-01-31 09:59:33,408 DEBUG chr1:108026251-118310251: Successfully fit background model for 8,953,101 bp. Use segment r for 0 bp 2025-01-31 09:59:33,617 DEBUG chr1:118310251-120231501: Successfully fit background model for 1,868,507 bp. Use segment r for 0 bp 2025-01-31 09:59:33,722 DEBUG chr5:120430751-125312251: Successfully fit background model for 4,662,698 bp. Use segment r for 0 bp 2025-01-31 09:59:33,745 DEBUG chr3:127241751-131288251: Successfully fit background model for 3,841,815 bp. Use segment r for 0 bp 2025-01-31 09:59:33,747 DEBUG chr2:118654251-122985751: Successfully fit background model for 4,116,108 bp. Use segment r for 0 bp 2025-01-31 09:59:33,837 DEBUG chr2:122985751-123708751: Successfully fit background model for 650,071 bp. Use segment r for 0 bp 2025-01-31 09:59:34,120 DEBUG chr5:125312251-129722751: Successfully fit background model for 4,218,996 bp. Use segment r for 0 bp 2025-01-31 09:59:34,165 DEBUG chr5:129722751-130022751: Successfully fit background model for 241,671 bp. Use segment r for 0 bp 2025-01-31 09:59:34,165 DEBUG chr3:131288251-135245751: Successfully fit background model for 3,507,706 bp. Use segment r for 0 bp 2025-01-31 09:59:34,208 DEBUG chr2:123708751-127206251: Successfully fit background model for 3,282,638 bp. Use segment r for 0 bp 2025-01-31 09:59:34,212 DEBUG chr3:135245751-135593751: Successfully fit background model for 339,422 bp. Use segment r for 0 bp 2025-01-31 09:59:34,605 DEBUG chr5:130022751-134228251: Successfully fit background model for 4,038,014 bp. Use segment r for 0 bp 2025-01-31 09:59:34,610 DEBUG chr2:127206251-131152251: Successfully fit background model for 3,798,752 bp. Use segment r for 0 bp 2025-01-31 09:59:34,625 DEBUG chr3:135593751-139265251: Successfully fit background model for 3,444,433 bp. Use segment r for 0 bp 2025-01-31 09:59:34,730 DEBUG chr4:115819751-131742501: Successfully fit background model for 14,434,137 bp. Use segment r for 0 bp 2025-01-31 09:59:34,899 DEBUG chr2:131152251-134090751: Successfully fit background model for 2,776,037 bp. Use segment r for 0 bp 2025-01-31 09:59:34,997 DEBUG chr3:139265251-141856501: Successfully fit background model for 2,349,196 bp. Use segment r for 2,901 bp 2025-01-31 09:59:35,099 DEBUG chr1:120231501-130993251: Successfully fit background model for 9,991,395 bp. Use segment r for 0 bp 2025-01-31 09:59:35,641 DEBUG chr1:130993251-136380751: Successfully fit background model for 5,255,624 bp. Use segment r for 0 bp 2025-01-31 09:59:35,714 DEBUG chr3:141856501-147298751: Successfully fit background model for 5,168,786 bp. Use segment r for 0 bp 2025-01-31 09:59:35,938 DEBUG chr1:136380751-139530751: Successfully fit background model for 2,955,761 bp. Use segment r for 0 bp 2025-01-31 09:59:36,118 DEBUG chr3:147298751-151545751: Successfully fit background model for 4,025,727 bp. Use segment r for 0 bp 2025-01-31 09:59:36,179 DEBUG chr4:131742501-141788251: Successfully fit background model for 9,810,813 bp. Use segment r for 0 bp 2025-01-31 09:59:36,257 DEBUG chr1:139530751-142771751: Successfully fit background model for 2,772,279 bp. Use segment r for 0 bp 2025-01-31 09:59:36,454 DEBUG chr1:142771751-144760751: Successfully fit background model for 1,704,827 bp. Use segment r for 0 bp 2025-01-31 09:59:36,729 DEBUG chrX:106010751-124247501: Successfully fit background model for 14,669,796 bp. Use segment r for 4,897 bp 2025-01-31 09:59:36,799 DEBUG chr3:151545751-158199251: Successfully fit background model for 6,215,827 bp. Use segment r for 0 bp 2025-01-31 09:59:36,877 DEBUG chr1:144760751-149252751: Successfully fit background model for 3,945,405 bp. Use segment r for 0 bp 2025-01-31 09:59:36,923 DEBUG chr5:134228251-151834684: Successfully fit background model for 16,380,151 bp. Use segment r for 0 bp 2025-01-31 09:59:36,974 DEBUG chr2:134090751-149421751: Successfully fit background model for 14,291,617 bp. Use segment r for 0 bp 2025-01-31 09:59:36,990 DEBUG chr3:158199251-160039680: Successfully fit background model for 1,475,000 bp. Use segment r for 0 bp 2025-01-31 09:59:37,092 DEBUG chr4:141788251-147865251: Successfully fit background model for 3,843,937 bp. Use segment r for 3,581 bp 2025-01-31 09:59:37,285 DEBUG chr2:149421751-152293251: Successfully fit background model for 2,354,223 bp. Use segment r for 0 bp 2025-01-31 09:59:37,414 DEBUG chr1:149252751-154971751: Successfully fit background model for 5,358,622 bp. Use segment r for 0 bp 2025-01-31 09:59:37,467 DEBUG chrX:126015000-133874751: Successfully fit background model for 6,766,075 bp. Use segment r for 0 bp 2025-01-31 09:59:37,574 DEBUG chr1:154971751-156619251: Successfully fit background model for 1,542,414 bp. Use segment r for 0 bp 2025-01-31 09:59:37,729 DEBUG chr4:147865251-153942251: Successfully fit background model for 5,956,987 bp. Use segment r for 0 bp 2025-01-31 09:59:37,798 DEBUG chr2:152293251-157366751: Successfully fit background model for 4,870,144 bp. Use segment r for 0 bp 2025-01-31 09:59:37,993 DEBUG chr4:153942251-156508116: Successfully fit background model for 2,268,346 bp. Use segment r for 0 bp 2025-01-31 09:59:38,500 DEBUG chr1:156619251-164238751: Successfully fit background model for 7,206,856 bp. Use segment r for 0 bp 2025-01-31 09:59:38,556 DEBUG chr2:157366751-163316751: Successfully fit background model for 5,701,646 bp. Use segment r for 0 bp 2025-01-31 09:59:38,789 DEBUG chr1:164238751-167262751: Successfully fit background model for 2,771,189 bp. Use segment r for 0 bp 2025-01-31 09:59:39,006 DEBUG chr2:163316751-167940251: Successfully fit background model for 4,452,876 bp. Use segment r for 0 bp 2025-01-31 09:59:39,176 DEBUG chr1:167262751-170996751: Successfully fit background model for 3,523,124 bp. Use segment r for 0 bp 2025-01-31 09:59:39,219 DEBUG chr1:170996751-171344251: Successfully fit background model for 319,905 bp. Use segment r for 0 bp 2025-01-31 09:59:39,513 DEBUG chr2:167940251-172216001: Successfully fit background model for 4,156,928 bp. Use segment r for 0 bp 2025-01-31 09:59:39,799 DEBUG chr2:172216001-175179501: Successfully fit background model for 2,737,654 bp. Use segment r for 0 bp 2025-01-31 09:59:40,048 DEBUG chr1:171344251-178318251: Successfully fit background model for 6,322,038 bp. Use segment r for 0 bp 2025-01-31 09:59:40,348 DEBUG chr2:176701000-179816751: Successfully fit background model for 1,923,680 bp. Use segment r for 903 bp 2025-01-31 09:59:40,577 DEBUG chr2:179816751-182113224: Successfully fit background model for 2,106,974 bp. Use segment r for 0 bp 2025-01-31 09:59:40,816 DEBUG chr1:178318251-185476751: Successfully fit background model for 6,773,167 bp. Use segment r for 0 bp 2025-01-31 09:59:41,224 DEBUG chr1:185476751-189744751: Successfully fit background model for 4,092,576 bp. Use segment r for 0 bp 2025-01-31 09:59:41,989 DEBUG chr1:189744751-195471971: Successfully fit background model for 5,308,929 bp. Use segment r for 0 bp 2025-01-31 09:59:48,214 DEBUG chrX:133874751-169971501: Successfully fit background model for 29,933,521 bp. Use segment r for 1,255 bp 2025-01-31 09:59:48,389 DEBUG chrX:169971501-171031299: Successfully fit background model for 5,730 bp. Use segment r for 0 bp 2025-01-31 10:01:13,254 DEBUG chr6:3050000-9370251: Successfully fit background model for 5,620,908 bp. Use segment r for 0 bp 2025-01-31 10:01:15,215 DEBUG chr6:9370251-28257751: Successfully fit background model for 16,719,891 bp. Use segment r for 0 bp 2025-01-31 10:01:15,819 DEBUG chr6:28257751-35132751: Successfully fit background model for 6,576,202 bp. Use segment r for 0 bp 2025-01-31 10:01:16,109 DEBUG chr6:35132751-38432751: Successfully fit background model for 3,055,835 bp. Use segment r for 0 bp 2025-01-31 10:01:16,198 DEBUG chr6:38432751-39362251: Successfully fit background model for 914,677 bp. Use segment r for 0 bp 2025-01-31 10:01:16,659 DEBUG chr6:39362251-44375251: Successfully fit background model for 4,489,033 bp. Use segment r for 0 bp 2025-01-31 10:01:16,805 DEBUG chr6:44375251-45968751: Successfully fit background model for 1,444,917 bp. Use segment r for 0 bp 2025-01-31 10:01:18,061 DEBUG chr7:3004000-4444751: Successfully fit background model for 1,035,075 bp. Use segment r for 0 bp 2025-01-31 10:01:18,074 DEBUG chr10:3101500-5803751: Successfully fit background model for 2,477,676 bp. Use segment r for 0 bp 2025-01-31 10:01:18,087 DEBUG chr10:5803751-5855751: Successfully fit background model for 50,804 bp. Use segment r for 0 bp 2025-01-31 10:01:18,134 DEBUG chr7:4444751-5110751: Successfully fit background model for 623,485 bp. Use segment r for 0 bp 2025-01-31 10:01:18,196 DEBUG chr7:5110751-5694751: Successfully fit background model for 428,446 bp. Use segment r for 0 bp 2025-01-31 10:01:18,301 DEBUG chr6:45968751-60022251: Successfully fit background model for 12,901,702 bp. Use segment r for 0 bp 2025-01-31 10:01:18,359 DEBUG chr7:5694751-7300751: Successfully fit background model for 1,345,710 bp. Use segment r for 0 bp 2025-01-31 10:01:19,252 DEBUG chr7:7300751-12880751: Successfully fit background model for 2,145,136 bp. Use segment r for 6,688 bp 2025-01-31 10:01:19,283 DEBUG chr7:12880751-13063751: Successfully fit background model for 175,231 bp. Use segment r for 0 bp 2025-01-31 10:01:19,334 DEBUG chr10:5855751-15130251: Successfully fit background model for 8,397,449 bp. Use segment r for 0 bp 2025-01-31 10:01:19,486 DEBUG chr6:60022251-70694751: Successfully fit background model for 9,187,561 bp. Use segment r for 0 bp 2025-01-31 10:01:19,487 DEBUG chr10:15130251-16620251: Successfully fit background model for 1,305,054 bp. Use segment r for 0 bp 2025-01-31 10:01:19,582 DEBUG chr7:13063751-15914001: Successfully fit background model for 1,764,369 bp. Use segment r for 0 bp 2025-01-31 10:01:19,711 DEBUG chr7:15914001-17225751: Successfully fit background model for 1,244,013 bp. Use segment r for 0 bp 2025-01-31 10:01:19,800 DEBUG chr6:70694751-74197251: Successfully fit background model for 3,298,399 bp. Use segment r for 0 bp 2025-01-31 10:01:19,959 DEBUG chr7:17225751-18986251: Successfully fit background model for 1,254,749 bp. Use segment r for 4,187 bp 2025-01-31 10:01:20,079 DEBUG chr7:18986251-20070501: Successfully fit background model for 1,034,481 bp. Use segment r for 0 bp 2025-01-31 10:01:20,268 DEBUG chr6:74197251-79743751: Successfully fit background model for 4,982,953 bp. Use segment r for 0 bp 2025-01-31 10:01:20,305 DEBUG chr7:22778500-24297251: Successfully fit background model for 837,807 bp. Use segment r for 7,850 bp 2025-01-31 10:01:20,458 DEBUG chr7:24297251-25932251: Successfully fit background model for 1,536,014 bp. Use segment r for 0 bp 2025-01-31 10:01:20,542 DEBUG chr7:25932251-26795751: Successfully fit background model for 683,998 bp. Use segment r for 0 bp 2025-01-31 10:01:20,564 DEBUG chr6:79743751-82994751: Successfully fit background model for 2,973,215 bp. Use segment r for 0 bp 2025-01-31 10:01:20,841 DEBUG chr10:16620251-29452751: Successfully fit background model for 11,768,238 bp. Use segment r for 0 bp 2025-01-31 10:01:20,973 DEBUG chr7:26795751-31163751: Successfully fit background model for 4,050,095 bp. Use segment r for 0 bp 2025-01-31 10:01:21,320 DEBUG chr7:31163751-33709751: Successfully fit background model for 962,492 bp. Use segment r for 15,637 bp 2025-01-31 10:01:21,464 DEBUG chr6:82994751-91941751: Successfully fit background model for 8,459,894 bp. Use segment r for 0 bp 2025-01-31 10:01:21,720 DEBUG chr7:33709751-38272251: Successfully fit background model for 4,381,132 bp. Use segment r for 0 bp 2025-01-31 10:01:21,735 DEBUG chr10:29452751-38212751: Successfully fit background model for 7,903,274 bp. Use segment r for 0 bp 2025-01-31 10:01:21,914 DEBUG chr10:38212751-40108251: Successfully fit background model for 1,739,401 bp. Use segment r for 0 bp 2025-01-31 10:01:22,229 DEBUG chr10:40108251-43462251: Successfully fit background model for 3,218,400 bp. Use segment r for 0 bp 2025-01-31 10:01:22,515 DEBUG chr7:38272251-44222001: Successfully fit background model for 4,372,044 bp. Use segment r for 1,796 bp 2025-01-31 10:01:22,544 DEBUG chr10:43462251-46912251: Successfully fit background model for 3,210,987 bp. Use segment r for 0 bp 2025-01-31 10:01:22,656 DEBUG chr7:44222001-45679751: Successfully fit background model for 1,430,491 bp. Use segment r for 0 bp 2025-01-31 10:01:22,708 DEBUG chr6:91941751-103876251: Successfully fit background model for 11,263,743 bp. Use segment r for 0 bp 2025-01-31 10:01:22,779 DEBUG chr10:46912251-49551751: Successfully fit background model for 2,298,161 bp. Use segment r for 0 bp 2025-01-31 10:01:22,799 DEBUG chr7:45679751-47202751: Successfully fit background model for 1,482,281 bp. Use segment r for 0 bp 2025-01-31 10:01:22,917 DEBUG chr7:47202751-48383751: Successfully fit background model for 943,003 bp. Use segment r for 0 bp 2025-01-31 10:01:23,077 DEBUG chr7:48383751-50027251: Successfully fit background model for 1,553,848 bp. Use segment r for 0 bp 2025-01-31 10:01:23,453 DEBUG chr10:49551751-57001751: Successfully fit background model for 6,627,986 bp. Use segment r for 0 bp 2025-01-31 10:01:23,568 DEBUG chr6:103876251-112929251: Successfully fit background model for 8,205,429 bp. Use segment r for 0 bp 2025-01-31 10:01:23,720 DEBUG chr10:57001751-59836251: Successfully fit background model for 2,305,601 bp. Use segment r for 0 bp 2025-01-31 10:01:24,092 DEBUG chr10:59836251-64078751: Successfully fit background model for 4,073,194 bp. Use segment r for 0 bp 2025-01-31 10:01:24,330 DEBUG chr10:64078751-65737251: Successfully fit background model for 1,446,411 bp. Use segment r for 72,904 bp 2025-01-31 10:01:25,337 DEBUG chr6:112929251-124662251: Successfully fit background model for 10,554,367 bp. Use segment r for 32 bp 2025-01-31 10:01:25,411 DEBUG chr6:124662251-125218251: Successfully fit background model for 533,706 bp. Use segment r for 0 bp 2025-01-31 10:01:25,421 DEBUG chr7:50027251-63854251: Successfully fit background model for 11,769,786 bp. Use segment r for 4,559 bp 2025-01-31 10:01:25,826 DEBUG chr6:125218251-129576751: Successfully fit background model for 4,139,484 bp. Use segment r for 0 bp 2025-01-31 10:01:25,932 DEBUG chr7:63854251-68940751: Successfully fit background model for 4,835,762 bp. Use segment r for 0 bp 2025-01-31 10:01:25,951 DEBUG chr10:65737251-75635751: Successfully fit background model for 9,191,043 bp. Use segment r for 68 bp 2025-01-31 10:01:26,108 DEBUG chr6:129576751-132799251: Successfully fit background model for 2,626,480 bp. Use segment r for 0 bp 2025-01-31 10:01:26,325 DEBUG chr10:75635751-79605251: Successfully fit background model for 3,678,105 bp. Use segment r for 0 bp 2025-01-31 10:01:26,338 DEBUG chr7:68940751-73517251: Successfully fit background model for 4,270,709 bp. Use segment r for 0 bp 2025-01-31 10:01:26,502 DEBUG chr10:79605251-81475251: Successfully fit background model for 1,838,337 bp. Use segment r for 0 bp 2025-01-31 10:01:26,615 DEBUG chr7:73517251-76492251: Successfully fit background model for 2,731,706 bp. Use segment r for 0 bp 2025-01-31 10:01:26,635 DEBUG chr10:81475251-82833751: Successfully fit background model for 929,156 bp. Use segment r for 0 bp 2025-01-31 10:01:26,730 DEBUG chr7:76492251-77686251: Successfully fit background model for 1,089,428 bp. Use segment r for 0 bp 2025-01-31 10:01:26,935 DEBUG chr7:77686251-79687751: Successfully fit background model for 1,926,275 bp. Use segment r for 0 bp 2025-01-31 10:01:26,995 DEBUG chr7:79687751-80252751: Successfully fit background model for 552,299 bp. Use segment r for 0 bp 2025-01-31 10:01:27,575 DEBUG chr7:80252751-84894751: Successfully fit background model for 4,394,552 bp. Use segment r for 0 bp 2025-01-31 10:01:28,004 DEBUG chr7:84894751-88613251: Successfully fit background model for 3,310,266 bp. Use segment r for 0 bp 2025-01-31 10:01:28,257 DEBUG chr7:88613251-90650751: Successfully fit background model for 1,845,589 bp. Use segment r for 0 bp 2025-01-31 10:01:28,606 DEBUG chr7:90650751-93384751: Successfully fit background model for 2,510,557 bp. Use segment r for 0 bp 2025-01-31 10:01:28,823 DEBUG chr7:93384751-95195751: Successfully fit background model for 1,619,300 bp. Use segment r for 0 bp 2025-01-31 10:01:28,963 DEBUG chr10:82833751-100643751: Successfully fit background model for 16,698,234 bp. Use segment r for 0 bp 2025-01-31 10:01:29,232 DEBUG chr7:95195751-98655751: Successfully fit background model for 3,272,363 bp. Use segment r for 0 bp 2025-01-31 10:01:29,588 DEBUG chr6:132799251-149736546: Successfully fit background model for 15,598,985 bp. Use segment r for 4,724 bp 2025-01-31 10:01:29,648 DEBUG chr7:98655751-102209751: Successfully fit background model for 3,477,894 bp. Use segment r for 0 bp 2025-01-31 10:01:29,787 DEBUG chr7:102209751-103302251: Successfully fit background model for 949,063 bp. Use segment r for 0 bp 2025-01-31 10:01:30,028 DEBUG chr7:103302251-105398751: Successfully fit background model for 1,758,773 bp. Use segment r for 0 bp 2025-01-31 10:01:30,146 DEBUG chr7:105398751-106254001: Successfully fit background model for 444,521 bp. Use segment r for 0 bp 2025-01-31 10:01:30,231 DEBUG chr10:100643751-109968001: Successfully fit background model for 8,515,350 bp. Use segment r for 0 bp 2025-01-31 10:01:30,423 DEBUG chr7:106254001-108473251: Successfully fit background model for 1,886,805 bp. Use segment r for 0 bp 2025-01-31 10:01:32,108 DEBUG chr10:109968001-124368001: Successfully fit background model for 13,451,016 bp. Use segment r for 0 bp 2025-01-31 10:01:32,430 DEBUG chr10:124368001-126900251: Successfully fit background model for 2,351,210 bp. Use segment r for 0 bp 2025-01-31 10:01:32,661 DEBUG chr10:126900251-128638751: Successfully fit background model for 1,688,024 bp. Use segment r for 0 bp 2025-01-31 10:01:32,906 DEBUG chr10:128638751-130694993: Successfully fit background model for 1,661,556 bp. Use segment r for 0 bp 2025-01-31 10:01:33,199 DEBUG chr7:108473251-126258751: Successfully fit background model for 16,943,905 bp. Use segment r for 0 bp 2025-01-31 10:01:33,500 DEBUG chr8:3009500-4680251: Successfully fit background model for 1,415,634 bp. Use segment r for 976 bp 2025-01-31 10:01:33,524 DEBUG chr7:126258751-128749251: Successfully fit background model for 2,398,789 bp. Use segment r for 0 bp 2025-01-31 10:01:33,816 DEBUG chr8:4680251-7024751: Successfully fit background model for 2,059,612 bp. Use segment r for 0 bp 2025-01-31 10:01:34,533 DEBUG chr8:7024751-11503751: Successfully fit background model for 4,239,338 bp. Use segment r for 0 bp 2025-01-31 10:01:34,766 DEBUG chr8:11503751-13282751: Successfully fit background model for 1,730,720 bp. Use segment r for 0 bp 2025-01-31 10:01:35,333 DEBUG chr8:13282751-16303251: Successfully fit background model for 2,805,556 bp. Use segment r for 7,314 bp 2025-01-31 10:01:35,530 DEBUG chr8:16303251-17658251: Successfully fit background model for 1,252,374 bp. Use segment r for 0 bp 2025-01-31 10:01:36,077 DEBUG chr7:128749251-140899751: Successfully fit background model for 11,599,995 bp. Use segment r for 0 bp 2025-01-31 10:01:36,208 DEBUG chr7:140899751-141683751: Successfully fit background model for 765,231 bp. Use segment r for 0 bp 2025-01-31 10:01:36,708 DEBUG chr7:141683751-145441459: Successfully fit background model for 3,490,738 bp. Use segment r for 0 bp 2025-01-31 10:01:38,873 DEBUG chr8:17658251-29231001: Successfully fit background model for 9,219,117 bp. Use segment r for 23,447 bp 2025-01-31 10:01:39,032 DEBUG chr14:3006500-5126501: Successfully fit background model for 69,205 bp. Use segment r for 5,566 bp 2025-01-31 10:01:39,192 DEBUG chr8:29231001-32400751: Successfully fit background model for 2,870,504 bp. Use segment r for 0 bp 2025-01-31 10:01:39,670 DEBUG chr8:32400751-37355751: Successfully fit background model for 4,653,954 bp. Use segment r for 0 bp 2025-01-31 10:01:40,362 DEBUG chr8:37355751-43635751: Successfully fit background model for 5,559,714 bp. Use segment r for 0 bp 2025-01-31 10:01:40,929 DEBUG chr8:43635751-49110751: Successfully fit background model for 5,137,511 bp. Use segment r for 0 bp 2025-01-31 10:01:41,333 DEBUG chr8:49110751-53222751: Successfully fit background model for 3,735,630 bp. Use segment r for 0 bp 2025-01-31 10:01:42,222 DEBUG chr14:5838000-19702251: Successfully fit background model for 10,947,349 bp. Use segment r for 2,908 bp 2025-01-31 10:01:43,848 DEBUG chr14:19702251-34547751: Successfully fit background model for 13,857,049 bp. Use segment r for 0 bp 2025-01-31 10:01:44,396 DEBUG chr8:53222751-69774251: Successfully fit background model for 14,456,217 bp. Use segment r for 1,726 bp 2025-01-31 10:01:44,686 DEBUG chr8:69774251-70916251: Successfully fit background model for 1,119,644 bp. Use segment r for 0 bp 2025-01-31 10:01:45,046 DEBUG chr8:70916251-72467751: Successfully fit background model for 1,304,125 bp. Use segment r for 0 bp 2025-01-31 10:01:46,532 DEBUG chr14:34547751-50758251: Successfully fit background model for 12,332,842 bp. Use segment r for 3,406 bp 2025-01-31 10:01:46,887 DEBUG chr14:50758251-54373751: Successfully fit background model for 2,593,624 bp. Use segment r for 0 bp 2025-01-31 10:01:47,019 DEBUG chr14:54373751-55659751: Successfully fit background model for 1,232,535 bp. Use segment r for 0 bp 2025-01-31 10:01:47,099 DEBUG chr8:72467751-83593751: Successfully fit background model for 10,093,567 bp. Use segment r for 9,667 bp 2025-01-31 10:01:47,524 DEBUG chr8:83593751-84955751: Successfully fit background model for 1,337,402 bp. Use segment r for 0 bp 2025-01-31 10:01:48,019 DEBUG chr9:3002500-13288251: Successfully fit background model for 9,005,347 bp. Use segment r for 0 bp 2025-01-31 10:01:48,207 DEBUG chr9:13288251-15225751: Successfully fit background model for 1,757,078 bp. Use segment r for 0 bp 2025-01-31 10:01:48,737 DEBUG chr9:15225751-20603251: Successfully fit background model for 4,760,891 bp. Use segment r for 0 bp 2025-01-31 10:01:48,886 DEBUG chr9:20603251-22002251: Successfully fit background model for 1,348,681 bp. Use segment r for 0 bp 2025-01-31 10:01:49,254 DEBUG chr9:22002251-25877251: Successfully fit background model for 3,552,224 bp. Use segment r for 0 bp 2025-01-31 10:01:49,481 DEBUG chr14:55659751-71278751: Successfully fit background model for 14,435,795 bp. Use segment r for 0 bp 2025-01-31 10:01:49,499 DEBUG chr8:84955751-94108751: Successfully fit background model for 8,744,572 bp. Use segment r for 0 bp 2025-01-31 10:01:50,224 DEBUG chr8:94108751-96523751: Successfully fit background model for 2,284,312 bp. Use segment r for 1,824 bp 2025-01-31 10:01:50,529 DEBUG chr9:25877251-37810751: Successfully fit background model for 11,208,832 bp. Use segment r for 0 bp 2025-01-31 10:01:50,723 DEBUG chr9:37810751-39766251: Successfully fit background model for 1,755,992 bp. Use segment r for 0 bp 2025-01-31 10:01:50,800 DEBUG chr8:96523751-102510751: Successfully fit background model for 5,458,604 bp. Use segment r for 0 bp 2025-01-31 10:01:50,841 DEBUG chr14:71278751-80671751: Successfully fit background model for 8,783,245 bp. Use segment r for 0 bp 2025-01-31 10:01:51,022 DEBUG chr9:39766251-43101251: Successfully fit background model for 3,195,709 bp. Use segment r for 0 bp 2025-01-31 10:01:51,061 DEBUG chr8:102510751-105252751: Successfully fit background model for 2,535,621 bp. Use segment r for 0 bp 2025-01-31 10:01:51,153 DEBUG chr9:43101251-44411251: Successfully fit background model for 1,277,940 bp. Use segment r for 0 bp 2025-01-31 10:01:51,290 DEBUG chr8:105252751-107380751: Successfully fit background model for 2,059,742 bp. Use segment r for 0 bp 2025-01-31 10:01:51,521 DEBUG chr14:80671751-85610501: Successfully fit background model for 4,415,728 bp. Use segment r for 0 bp 2025-01-31 10:01:52,202 DEBUG chr14:85610501-88553251: Successfully fit background model for 2,664,929 bp. Use segment r for 0 bp 2025-01-31 10:01:52,490 DEBUG chr9:44411251-56698751: Successfully fit background model for 11,740,592 bp. Use segment r for 0 bp 2025-01-31 10:01:52,895 DEBUG chr8:107380751-116864251: Successfully fit background model for 8,886,403 bp. Use segment r for 288,463 bp 2025-01-31 10:01:53,152 DEBUG chr8:116864251-119344501: Successfully fit background model for 2,407,820 bp. Use segment r for 0 bp 2025-01-31 10:01:53,398 DEBUG chr9:56698751-65522501: Successfully fit background model for 8,597,285 bp. Use segment r for 0 bp 2025-01-31 10:01:53,560 DEBUG chr14:88553251-97930251: Successfully fit background model for 8,528,728 bp. Use segment r for 0 bp 2025-01-31 10:01:53,593 DEBUG chr8:119344501-123981251: Successfully fit background model for 4,435,685 bp. Use segment r for 0 bp 2025-01-31 10:01:54,273 DEBUG chr8:123981251-129401213: Successfully fit background model for 5,035,945 bp. Use segment r for 0 bp 2025-01-31 10:01:54,906 DEBUG chr14:97930251-106565751: Successfully fit background model for 7,949,800 bp. Use segment r for 0 bp 2025-01-31 10:01:55,262 DEBUG chr9:65522501-80635751: Successfully fit background model for 14,233,922 bp. Use segment r for 0 bp 2025-01-31 10:01:55,608 DEBUG chr14:106565751-113795501: Successfully fit background model for 6,534,420 bp. Use segment r for 0 bp 2025-01-31 10:01:56,763 DEBUG chr9:80635751-90113251: Successfully fit background model for 8,230,187 bp. Use segment r for 92 bp 2025-01-31 10:01:56,785 DEBUG chr14:113795501-124902244: Successfully fit background model for 10,050,355 bp. Use segment r for 0 bp 2025-01-31 10:01:56,828 DEBUG chr9:90113251-90552751: Successfully fit background model for 391,132 bp. Use segment r for 0 bp 2025-01-31 10:01:57,145 DEBUG chr9:90552751-93878751: Successfully fit background model for 2,955,046 bp. Use segment r for 0 bp 2025-01-31 10:01:59,202 DEBUG chr9:93878751-106169751: Successfully fit background model for 11,718,484 bp. Use segment r for 0 bp 2025-01-31 10:01:59,633 DEBUG chr9:106169751-110690251: Successfully fit background model for 4,167,105 bp. Use segment r for 0 bp 2025-01-31 10:02:01,092 DEBUG chr9:110690251-119319751: Successfully fit background model for 8,153,694 bp. Use segment r for 0 bp 2025-01-31 10:02:01,673 DEBUG chr9:119319751-124595110: Successfully fit background model for 4,732,653 bp. Use segment r for 0 bp 2025-01-31 10:02:55,101 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:02:55,479 DEBUG chr11:3203251-6886751: Successfully fit background model for 3,519,654 bp. Use segment r for 0 bp 2025-01-31 10:02:56,044 DEBUG chr11:6886751-12603501: Successfully fit background model for 5,151,595 bp. Use segment r for 0 bp 2025-01-31 10:02:56,374 DEBUG chr11:12603501-16086251: Successfully fit background model for 3,068,525 bp. Use segment r for 0 bp 2025-01-31 10:02:56,627 DEBUG chr11:16086251-18724251: Successfully fit background model for 2,387,096 bp. Use segment r for 0 bp 2025-01-31 10:02:57,229 DEBUG chr11:18724251-24492251: Successfully fit background model for 5,450,533 bp. Use segment r for 0 bp 2025-01-31 10:02:57,620 DEBUG chr11:24492251-28736001: Successfully fit background model for 3,798,906 bp. Use segment r for 0 bp 2025-01-31 10:02:58,365 DEBUG chr11:28736001-36580751: Successfully fit background model for 7,301,373 bp. Use segment r for 0 bp 2025-01-31 10:02:58,674 DEBUG chr11:36580751-39891251: Successfully fit background model for 3,153,584 bp. Use segment r for 0 bp 2025-01-31 10:02:59,697 DEBUG chr11:39891251-48773251: Successfully fit background model for 8,152,920 bp. Use segment r for 0 bp 2025-01-31 10:02:59,730 DEBUG chr11:48773251-48875751: Successfully fit background model for 99,533 bp. Use segment r for 0 bp 2025-01-31 10:02:59,953 DEBUG chr13:3000500-4528251: Successfully fit background model for 1,282,205 bp. Use segment r for 0 bp 2025-01-31 10:03:00,389 DEBUG chr13:4528251-8744251: Successfully fit background model for 3,747,444 bp. Use segment r for 0 bp 2025-01-31 10:03:01,167 DEBUG chr11:48875751-58902251: Successfully fit background model for 9,413,877 bp. Use segment r for 0 bp 2025-01-31 10:03:01,360 DEBUG chr11:58902251-60774751: Successfully fit background model for 1,740,804 bp. Use segment r for 0 bp 2025-01-31 10:03:02,389 DEBUG chr13:8744251-21158251: Successfully fit background model for 10,895,033 bp. Use segment r for 0 bp 2025-01-31 10:03:02,470 DEBUG chr13:21158251-21709751: Successfully fit background model for 513,886 bp. Use segment r for 0 bp 2025-01-31 10:03:02,518 DEBUG chr13:21709751-22052251: Successfully fit background model for 286,979 bp. Use segment r for 0 bp 2025-01-31 10:03:02,549 DEBUG chr11:60774751-68961751: Successfully fit background model for 7,914,975 bp. Use segment r for 0 bp 2025-01-31 10:03:02,683 DEBUG chr13:22052251-23395251: Successfully fit background model for 1,025,004 bp. Use segment r for 0 bp 2025-01-31 10:03:02,723 DEBUG chr11:68961751-70561751: Successfully fit background model for 1,561,891 bp. Use segment r for 0 bp 2025-01-31 10:03:02,726 DEBUG chr13:23395251-23765751: Successfully fit background model for 346,922 bp. Use segment r for 0 bp 2025-01-31 10:03:02,956 DEBUG chr13:23765751-25985251: Successfully fit background model for 2,085,272 bp. Use segment r for 0 bp 2025-01-31 10:03:03,125 DEBUG chr13:25985251-27735251: Successfully fit background model for 1,562,055 bp. Use segment r for 0 bp 2025-01-31 10:03:03,133 DEBUG chr11:70561751-74829751: Successfully fit background model for 3,929,930 bp. Use segment r for 0 bp 2025-01-31 10:03:03,615 DEBUG chr11:74829751-79573751: Successfully fit background model for 4,610,818 bp. Use segment r for 0 bp 2025-01-31 10:03:05,247 DEBUG chr11:79573751-90750251: Successfully fit background model for 10,750,491 bp. Use segment r for 0 bp 2025-01-31 10:03:05,581 DEBUG chr11:90750251-94129251: Successfully fit background model for 3,130,249 bp. Use segment r for 0 bp 2025-01-31 10:03:06,204 DEBUG chr13:27735251-48650751: Successfully fit background model for 19,599,593 bp. Use segment r for 0 bp 2025-01-31 10:03:06,613 DEBUG chr11:94129251-102978251: Successfully fit background model for 8,608,564 bp. Use segment r for 0 bp 2025-01-31 10:03:07,404 DEBUG chr11:102978251-110672751: Successfully fit background model for 7,393,357 bp. Use segment r for 0 bp 2025-01-31 10:03:07,544 DEBUG chr12:3000500-5451251: Successfully fit background model for 2,256,934 bp. Use segment r for 0 bp 2025-01-31 10:03:07,556 DEBUG chr11:110672751-112156251: Successfully fit background model for 1,408,505 bp. Use segment r for 0 bp 2025-01-31 10:03:07,677 DEBUG chr12:5451251-6798501: Successfully fit background model for 1,200,363 bp. Use segment r for 0 bp 2025-01-31 10:03:07,691 DEBUG chr13:48650751-61167251: Successfully fit background model for 11,613,345 bp. Use segment r for 0 bp 2025-01-31 10:03:07,834 DEBUG chr11:112156251-115153251: Successfully fit background model for 2,893,406 bp. Use segment r for 0 bp 2025-01-31 10:03:08,598 DEBUG chr11:115153251-122082543: Successfully fit background model for 6,613,705 bp. Use segment r for 0 bp 2025-01-31 10:03:09,780 DEBUG chr13:61167251-73232751: Successfully fit background model for 9,459,684 bp. Use segment r for 25,283 bp 2025-01-31 10:03:09,879 DEBUG chr13:73232751-73960751: Successfully fit background model for 714,746 bp. Use segment r for 0 bp 2025-01-31 10:03:10,239 DEBUG chr13:73960751-77217251: Successfully fit background model for 2,947,012 bp. Use segment r for 0 bp 2025-01-31 10:03:10,340 DEBUG chr13:77217251-78162751: Successfully fit background model for 794,074 bp. Use segment r for 0 bp 2025-01-31 10:03:10,354 DEBUG chr13:78162751-78214251: Successfully fit background model for 51,397 bp. Use segment r for 0 bp 2025-01-31 10:03:10,650 DEBUG chr13:78214251-80881751: Successfully fit background model for 2,395,277 bp. Use segment r for 0 bp 2025-01-31 10:03:10,950 DEBUG chr13:80881751-83734251: Successfully fit background model for 2,641,193 bp. Use segment r for 0 bp 2025-01-31 10:03:11,299 DEBUG chr15:3050500-5068251: Successfully fit background model for 1,715,865 bp. Use segment r for 0 bp 2025-01-31 10:03:11,606 DEBUG chr13:83734251-89812251: Successfully fit background model for 5,405,813 bp. Use segment r for 0 bp 2025-01-31 10:03:12,206 DEBUG chr12:6798501-33121251: Successfully fit background model for 20,576,751 bp. Use segment r for 5,641 bp 2025-01-31 10:03:12,297 DEBUG chr15:5068251-13494751: Successfully fit background model for 7,764,635 bp. Use segment r for 0 bp 2025-01-31 10:03:12,351 DEBUG chr13:89812251-96958751: Successfully fit background model for 6,707,237 bp. Use segment r for 0 bp 2025-01-31 10:03:12,720 DEBUG chr13:96958751-100702751: Successfully fit background model for 3,510,132 bp. Use segment r for 0 bp 2025-01-31 10:03:13,040 DEBUG chr16:3017000-6217751: Successfully fit background model for 2,670,018 bp. Use segment r for 935 bp 2025-01-31 10:03:13,256 DEBUG chr16:6217751-8399751: Successfully fit background model for 2,056,087 bp. Use segment r for 0 bp 2025-01-31 10:03:13,748 DEBUG chr15:13494751-25792751: Successfully fit background model for 10,995,156 bp. Use segment r for 0 bp 2025-01-31 10:03:13,896 DEBUG chr16:8399751-14481751: Successfully fit background model for 5,755,960 bp. Use segment r for 0 bp 2025-01-31 10:03:14,147 DEBUG chr16:14481751-17067251: Successfully fit background model for 2,260,314 bp. Use segment r for 0 bp 2025-01-31 10:03:14,266 DEBUG chr15:25792751-31184751: Successfully fit background model for 4,945,472 bp. Use segment r for 0 bp 2025-01-31 10:03:14,342 DEBUG chr16:17067251-18973751: Successfully fit background model for 1,840,173 bp. Use segment r for 0 bp 2025-01-31 10:03:14,399 DEBUG chr13:100702751-115323751: Successfully fit background model for 13,677,813 bp. Use segment r for 0 bp 2025-01-31 10:03:14,406 DEBUG chr16:18973751-19527251: Successfully fit background model for 447,178 bp. Use segment r for 0 bp 2025-01-31 10:03:14,775 DEBUG chr15:31184751-36175751: Successfully fit background model for 4,497,087 bp. Use segment r for 0 bp 2025-01-31 10:03:14,816 DEBUG chr16:19527251-23668501: Successfully fit background model for 3,847,601 bp. Use segment r for 0 bp 2025-01-31 10:03:14,829 DEBUG chr13:115323751-119689751: Successfully fit background model for 3,871,174 bp. Use segment r for 0 bp 2025-01-31 10:03:14,911 DEBUG chr13:119689751-120421639: Successfully fit background model for 280,303 bp. Use segment r for 0 bp 2025-01-31 10:03:15,012 DEBUG chr15:36175751-38604751: Successfully fit background model for 2,320,437 bp. Use segment r for 0 bp 2025-01-31 10:03:15,210 DEBUG chr16:23668501-27993251: Successfully fit background model for 4,047,024 bp. Use segment r for 0 bp 2025-01-31 10:03:15,358 DEBUG chr12:33121251-51690751: Successfully fit background model for 16,692,682 bp. Use segment r for 133,980 bp 2025-01-31 10:03:15,614 DEBUG chr16:27993251-32399751: Successfully fit background model for 4,185,391 bp. Use segment r for 0 bp 2025-01-31 10:03:16,130 DEBUG chr12:51690751-59857251: Successfully fit background model for 7,369,670 bp. Use segment r for 0 bp 2025-01-31 10:03:16,282 DEBUG chr16:32399751-39626251: Successfully fit background model for 6,888,119 bp. Use segment r for 0 bp 2025-01-31 10:03:16,507 DEBUG chr12:59857251-64033751: Successfully fit background model for 3,670,902 bp. Use segment r for 0 bp 2025-01-31 10:03:16,949 DEBUG chr12:64033751-69153751: Successfully fit background model for 4,620,604 bp. Use segment r for 0 bp 2025-01-31 10:03:17,231 DEBUG chr12:69153751-71839251: Successfully fit background model for 2,574,300 bp. Use segment r for 0 bp 2025-01-31 10:03:17,522 DEBUG chr15:38604751-57568751: Successfully fit background model for 17,118,477 bp. Use segment r for 0 bp 2025-01-31 10:03:17,677 DEBUG chr12:71839251-75595251: Successfully fit background model for 3,551,570 bp. Use segment r for 0 bp 2025-01-31 10:03:17,748 DEBUG chr15:57568751-59620251: Successfully fit background model for 1,988,240 bp. Use segment r for 0 bp 2025-01-31 10:03:17,975 DEBUG chr16:39626251-50984751: Successfully fit background model for 10,455,762 bp. Use segment r for 0 bp 2025-01-31 10:03:18,157 DEBUG chr15:59620251-63993251: Successfully fit background model for 3,959,298 bp. Use segment r for 0 bp 2025-01-31 10:03:18,419 DEBUG chr16:50984751-55819251: Successfully fit background model for 4,310,679 bp. Use segment r for 0 bp 2025-01-31 10:03:18,463 DEBUG chr15:63993251-67087251: Successfully fit background model for 2,838,546 bp. Use segment r for 0 bp 2025-01-31 10:03:18,860 DEBUG chr16:55819251-59809751: Successfully fit background model for 3,550,846 bp. Use segment r for 0 bp 2025-01-31 10:03:19,114 DEBUG chr15:67087251-72672751: Successfully fit background model for 5,127,269 bp. Use segment r for 0 bp 2025-01-31 10:03:19,259 DEBUG chr16:59809751-64125251: Successfully fit background model for 3,844,738 bp. Use segment r for 0 bp 2025-01-31 10:03:19,480 DEBUG chr15:72672751-75657251: Successfully fit background model for 2,807,883 bp. Use segment r for 0 bp 2025-01-31 10:03:19,567 DEBUG chr12:75595251-87048251: Successfully fit background model for 10,913,870 bp. Use segment r for 0 bp 2025-01-31 10:03:20,454 DEBUG chr12:87048251-92818751: Successfully fit background model for 4,959,306 bp. Use segment r for 0 bp 2025-01-31 10:03:20,632 DEBUG chr15:75657251-82380751: Successfully fit background model for 6,436,332 bp. Use segment r for 0 bp 2025-01-31 10:03:20,900 DEBUG chr12:92818751-97152751: Successfully fit background model for 3,891,055 bp. Use segment r for 0 bp 2025-01-31 10:03:21,101 DEBUG chr12:97152751-99222251: Successfully fit background model for 1,918,833 bp. Use segment r for 0 bp 2025-01-31 10:03:21,289 DEBUG chr15:82380751-85850251: Successfully fit background model for 3,308,820 bp. Use segment r for 0 bp 2025-01-31 10:03:21,805 DEBUG chr15:85850251-88732751: Successfully fit background model for 2,801,232 bp. Use segment r for 0 bp 2025-01-31 10:03:21,884 DEBUG chr12:99222251-105903251: Successfully fit background model for 6,276,868 bp. Use segment r for 0 bp 2025-01-31 10:03:21,941 DEBUG chr15:88732751-89343251: Successfully fit background model for 584,431 bp. Use segment r for 0 bp 2025-01-31 10:03:22,307 DEBUG chr12:105903251-110367751: Successfully fit background model for 4,324,338 bp. Use segment r for 0 bp 2025-01-31 10:03:22,498 DEBUG chr16:64125251-87431751: Successfully fit background model for 21,183,941 bp. Use segment r for 0 bp 2025-01-31 10:03:22,608 DEBUG chr12:110367751-113029751: Successfully fit background model for 2,587,654 bp. Use segment r for 0 bp 2025-01-31 10:03:22,768 DEBUG chr16:87431751-89764251: Successfully fit background model for 2,175,788 bp. Use segment r for 0 bp 2025-01-31 10:03:23,270 DEBUG chr16:89764251-94483251: Successfully fit background model for 4,574,833 bp. Use segment r for 0 bp 2025-01-31 10:03:23,322 DEBUG chr12:113029751-120129022: Successfully fit background model for 6,162,717 bp. Use segment r for 0 bp 2025-01-31 10:03:23,612 DEBUG chr16:94483251-98207768: Successfully fit background model for 3,467,481 bp. Use segment r for 0 bp 2025-01-31 10:03:23,748 DEBUG chr15:89343251-98505751: Successfully fit background model for 8,652,927 bp. Use segment r for 0 bp 2025-01-31 10:03:24,432 DEBUG chr15:98505751-103368751: Successfully fit background model for 4,709,508 bp. Use segment r for 0 bp 2025-01-31 10:03:24,507 DEBUG chr15:103368751-104043685: Successfully fit background model for 428,154 bp. Use segment r for 0 bp 2025-01-31 10:03:27,123 DEBUG chr17:3000000-16132751: Successfully fit background model for 11,072,661 bp. Use segment r for 0 bp 2025-01-31 10:03:28,338 DEBUG chr17:16132751-23533251: Successfully fit background model for 6,090,660 bp. Use segment r for 457 bp 2025-01-31 10:03:28,906 DEBUG chr17:23533251-29573251: Successfully fit background model for 5,848,769 bp. Use segment r for 0 bp 2025-01-31 10:03:29,322 DEBUG chr17:29573251-33759751: Successfully fit background model for 3,913,688 bp. Use segment r for 0 bp 2025-01-31 10:03:29,580 DEBUG chr17:33759751-36437751: Successfully fit background model for 2,415,608 bp. Use segment r for 0 bp 2025-01-31 10:03:29,672 DEBUG chr17:36437751-37134251: Successfully fit background model for 618,738 bp. Use segment r for 0 bp 2025-01-31 10:03:30,194 DEBUG chr17:37134251-42299251: Successfully fit background model for 4,359,183 bp. Use segment r for 0 bp 2025-01-31 10:03:30,488 DEBUG chr17:42299251-45454251: Successfully fit background model for 3,015,660 bp. Use segment r for 0 bp 2025-01-31 10:03:30,730 DEBUG chr17:45454251-47922751: Successfully fit background model for 2,411,063 bp. Use segment r for 0 bp 2025-01-31 10:03:31,281 DEBUG chr17:47922751-52436501: Successfully fit background model for 4,317,034 bp. Use segment r for 0 bp 2025-01-31 10:03:31,613 DEBUG chr17:52436501-55929751: Successfully fit background model for 3,008,729 bp. Use segment r for 0 bp 2025-01-31 10:03:31,774 DEBUG chr17:55929751-57526251: Successfully fit background model for 1,527,197 bp. Use segment r for 0 bp 2025-01-31 10:03:32,130 DEBUG chr17:57526251-60517251: Successfully fit background model for 2,665,737 bp. Use segment r for 0 bp 2025-01-31 10:03:32,826 DEBUG chr17:60517251-66071751: Successfully fit background model for 5,154,093 bp. Use segment r for 0 bp 2025-01-31 10:03:34,181 DEBUG chr17:66071751-75839251: Successfully fit background model for 9,213,450 bp. Use segment r for 0 bp 2025-01-31 10:03:34,407 DEBUG chr17:75839251-77574001: Successfully fit background model for 1,588,319 bp. Use segment r for 0 bp 2025-01-31 10:03:36,196 DEBUG chr17:77574001-89166251: Successfully fit background model for 11,007,362 bp. Use segment r for 0 bp 2025-01-31 10:03:36,784 DEBUG chr17:89166251-94987271: Successfully fit background model for 5,175,488 bp. Use segment r for 0 bp 2025-01-31 10:04:20,295 DEBUG chr19:3080000-7496501: Successfully fit background model for 4,114,122 bp. Use segment r for 0 bp 2025-01-31 10:04:20,376 DEBUG chr19:7496501-8216751: Successfully fit background model for 567,147 bp. Use segment r for 0 bp 2025-01-31 10:04:20,707 DEBUG chr19:8216751-11003751: Successfully fit background model for 2,339,480 bp. Use segment r for 0 bp 2025-01-31 10:04:21,182 DEBUG chr19:11003751-15490501: Successfully fit background model for 4,060,387 bp. Use segment r for 0 bp 2025-01-31 10:04:21,388 DEBUG chr19:15490501-17437251: Successfully fit background model for 1,865,503 bp. Use segment r for 0 bp 2025-01-31 10:04:21,557 DEBUG chr18:3000500-17608751: Successfully fit background model for 13,245,018 bp. Use segment r for 0 bp 2025-01-31 10:04:21,757 DEBUG chr18:17608751-19429251: Successfully fit background model for 1,626,225 bp. Use segment r for 0 bp 2025-01-31 10:04:21,915 DEBUG chr19:17437251-22637751: Successfully fit background model for 4,845,616 bp. Use segment r for 0 bp 2025-01-31 10:04:22,716 DEBUG chr18:19429251-27222751: Successfully fit background model for 7,209,745 bp. Use segment r for 0 bp 2025-01-31 10:04:23,061 DEBUG chr18:27222751-30995251: Successfully fit background model for 3,477,852 bp. Use segment r for 0 bp 2025-01-31 10:04:23,161 DEBUG chr19:22637751-33360751: Successfully fit background model for 10,246,426 bp. Use segment r for 0 bp 2025-01-31 10:04:23,369 DEBUG chr18:30995251-34327251: Successfully fit background model for 3,081,647 bp. Use segment r for 0 bp 2025-01-31 10:04:23,397 DEBUG chr19:33360751-35681751: Successfully fit background model for 2,022,110 bp. Use segment r for 0 bp 2025-01-31 10:04:23,621 DEBUG chr18:34327251-36804251: Successfully fit background model for 2,419,696 bp. Use segment r for 0 bp 2025-01-31 10:04:24,006 DEBUG chr19:35681751-41586251: Successfully fit background model for 5,426,027 bp. Use segment r for 0 bp 2025-01-31 10:04:24,727 DEBUG chr19:41586251-49262251: Successfully fit background model for 7,401,298 bp. Use segment r for 0 bp 2025-01-31 10:04:24,983 DEBUG chr19:49262251-52024751: Successfully fit background model for 2,542,337 bp. Use segment r for 0 bp 2025-01-31 10:04:25,883 DEBUG chr19:52024751-61431566: Successfully fit background model for 8,916,284 bp. Use segment r for 0 bp 2025-01-31 10:04:26,193 DEBUG chr18:36804251-60483751: Successfully fit background model for 21,914,642 bp. Use segment r for 0 bp 2025-01-31 10:04:26,349 DEBUG chr18:60483751-61626251: Successfully fit background model for 1,119,303 bp. Use segment r for 0 bp 2025-01-31 10:04:27,692 DEBUG chr18:61626251-73702751: Successfully fit background model for 11,397,921 bp. Use segment r for 0 bp 2025-01-31 10:04:28,131 DEBUG chr18:73702751-78013751: Successfully fit background model for 4,053,181 bp. Use segment r for 0 bp 2025-01-31 10:04:29,142 DEBUG chr18:78013751-86309751: Successfully fit background model for 7,720,187 bp. Use segment r for 0 bp 2025-01-31 10:04:29,549 DEBUG chr18:86309751-90702639: Successfully fit background model for 3,714,768 bp. Use segment r for 0 bp 2025-01-31 10:05:35,285 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:05:35,286 INFO Calculating per-bp p-values 2025-01-31 10:05:35,288 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:05:35,336 DEBUG chr1: Calculating p-values 2025-01-31 10:05:35,339 DEBUG chr3: Calculating p-values 2025-01-31 10:05:35,340 DEBUG chr2: Calculating p-values 2025-01-31 10:05:35,341 DEBUG chrX: Calculating p-values 2025-01-31 10:05:35,342 DEBUG chr4: Calculating p-values 2025-01-31 10:05:35,378 DEBUG chr5: Calculating p-values 2025-01-31 10:06:11,913 DEBUG Saving p-values for chrX 2025-01-31 10:06:13,737 DEBUG Saving p-values for chr3 2025-01-31 10:06:15,640 DEBUG Saving p-values for chr5 2025-01-31 10:06:17,560 DEBUG Saving p-values for chr4 2025-01-31 10:06:22,970 DEBUG Saving p-values for chr2 2025-01-31 10:06:29,124 DEBUG Saving p-values for chr1 2025-01-31 10:06:40,886 DEBUG chr6: Calculating p-values 2025-01-31 10:06:43,711 DEBUG chr7: Calculating p-values 2025-01-31 10:06:44,619 DEBUG chr10: Calculating p-values 2025-01-31 10:06:51,004 DEBUG chr8: Calculating p-values 2025-01-31 10:06:57,224 DEBUG chr14: Calculating p-values 2025-01-31 10:07:04,205 DEBUG chr9: Calculating p-values 2025-01-31 10:07:11,851 DEBUG Saving p-values for chr6 2025-01-31 10:07:12,479 DEBUG Saving p-values for chr10 2025-01-31 10:07:19,966 DEBUG Saving p-values for chr7 2025-01-31 10:07:21,511 DEBUG Saving p-values for chr14 2025-01-31 10:07:27,487 DEBUG Saving p-values for chr8 2025-01-31 10:07:35,310 DEBUG chr11: Calculating p-values 2025-01-31 10:07:37,162 DEBUG Saving p-values for chr9 2025-01-31 10:07:39,022 DEBUG chr13: Calculating p-values 2025-01-31 10:07:42,930 DEBUG chr12: Calculating p-values 2025-01-31 10:07:47,120 DEBUG chr15: Calculating p-values 2025-01-31 10:07:51,256 DEBUG chr16: Calculating p-values 2025-01-31 10:08:02,332 DEBUG chr17: Calculating p-values 2025-01-31 10:08:10,328 DEBUG Saving p-values for chr12 2025-01-31 10:08:11,763 DEBUG Saving p-values for chr11 2025-01-31 10:08:15,210 DEBUG Saving p-values for chr13 2025-01-31 10:08:15,723 DEBUG Saving p-values for chr16 2025-01-31 10:08:21,641 DEBUG Saving p-values for chr15 2025-01-31 10:08:26,567 DEBUG Saving p-values for chr17 2025-01-31 10:08:30,762 DEBUG chrY: Calculating p-values 2025-01-31 10:08:33,732 DEBUG chr18: Calculating p-values 2025-01-31 10:08:34,460 DEBUG chr19: Calculating p-values 2025-01-31 10:08:48,870 DEBUG Saving p-values for chr19 2025-01-31 10:08:50,051 DEBUG Saving p-values for chr18 2025-01-31 10:09:07,078 DEBUG Results of calc_pvals emitted. 2025-01-31 10:09:07,079 INFO Converting threshold values to bigwig 2025-01-31 10:09:07,079 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:09:24,983 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:09:57,267 INFO Converting background quantile values to bigwig 2025-01-31 10:09:57,267 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:10:34,422 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:11:04,092 INFO Calculating per-bp FDRs 2025-01-31 10:11:04,094 DEBUG AG81951: Extracting raw P-values 2025-01-31 10:11:44,847 DEBUG AG81951: Computing FDR 2025-01-31 10:12:04,258 DEBUG AG81951: Saving FDRs to parquet 2025-01-31 10:13:39,653 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:13:39,656 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:13:39,657 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:13:43,111 DEBUG chr4: Calling hotspots 2025-01-31 10:13:43,243 DEBUG chr5: Calling hotspots 2025-01-31 10:13:43,266 DEBUG chr3: Calling hotspots 2025-01-31 10:13:43,378 DEBUG chrX: Calling hotspots 2025-01-31 10:13:43,908 DEBUG chr2: Calling hotspots 2025-01-31 10:13:43,992 DEBUG chr1: Calling hotspots 2025-01-31 10:13:51,949 DEBUG chr4: 3641 hotspots called 2025-01-31 10:13:52,247 DEBUG chr5: 3387 hotspots called 2025-01-31 10:13:53,015 DEBUG chr3: 2566 hotspots called 2025-01-31 10:13:53,345 DEBUG chrX: 2077 hotspots called 2025-01-31 10:13:54,662 DEBUG chr2: 4310 hotspots called 2025-01-31 10:13:55,200 DEBUG chr6: Calling hotspots 2025-01-31 10:13:55,523 DEBUG chr7: Calling hotspots 2025-01-31 10:13:55,891 DEBUG chr10: Calling hotspots 2025-01-31 10:13:56,099 DEBUG chr8: Calling hotspots 2025-01-31 10:13:56,267 DEBUG chr1: 3482 hotspots called 2025-01-31 10:13:57,226 DEBUG chr14: Calling hotspots 2025-01-31 10:13:58,725 DEBUG chr9: Calling hotspots 2025-01-31 10:14:03,849 DEBUG chr8: 2706 hotspots called 2025-01-31 10:14:03,906 DEBUG chr10: 2523 hotspots called 2025-01-31 10:14:04,297 DEBUG chr6: 2639 hotspots called 2025-01-31 10:14:04,489 DEBUG chr7: 3602 hotspots called 2025-01-31 10:14:04,776 DEBUG chr14: 1832 hotspots called 2025-01-31 10:14:05,893 DEBUG chr9: 3023 hotspots called 2025-01-31 10:14:06,476 DEBUG chr11: Calling hotspots 2025-01-31 10:14:06,636 DEBUG chr13: Calling hotspots 2025-01-31 10:14:06,741 DEBUG chr15: Calling hotspots 2025-01-31 10:14:06,843 DEBUG chr12: Calling hotspots 2025-01-31 10:14:07,072 DEBUG chr16: Calling hotspots 2025-01-31 10:14:07,653 DEBUG chr17: Calling hotspots 2025-01-31 10:14:12,591 DEBUG chr15: 2423 hotspots called 2025-01-31 10:14:12,873 DEBUG chr16: 1721 hotspots called 2025-01-31 10:14:13,179 DEBUG chr17: 2466 hotspots called 2025-01-31 10:14:13,550 DEBUG chr12: 2009 hotspots called 2025-01-31 10:14:13,554 DEBUG chr11: 4391 hotspots called 2025-01-31 10:14:13,610 DEBUG chr13: 2555 hotspots called 2025-01-31 10:14:13,960 DEBUG chr19: Calling hotspots 2025-01-31 10:14:14,162 DEBUG chr18: Calling hotspots 2025-01-31 10:14:17,202 DEBUG chr19: 1863 hotspots called 2025-01-31 10:14:18,985 DEBUG chr18: 1438 hotspots called 2025-01-31 10:14:19,669 DEBUG Results of call_hotspots emitted. 2025-01-31 10:14:19,721 INFO There are 54654 hotspots called at FDR=0.05 2025-01-31 10:14:22,421 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:14:22,421 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:14:32,208 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:14:32,388 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:14:32,463 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:14:34,075 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:14:34,229 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:14:34,676 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:14:41,541 DEBUG chr5: 3884 peaks called 2025-01-31 10:14:42,360 DEBUG chr4: 4152 peaks called 2025-01-31 10:14:42,501 DEBUG chr3: 2997 peaks called 2025-01-31 10:14:43,267 DEBUG chrX: 2224 peaks called 2025-01-31 10:14:43,686 DEBUG chr2: 4936 peaks called 2025-01-31 10:14:45,209 DEBUG chr1: 3994 peaks called 2025-01-31 10:14:49,838 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:14:50,100 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:14:51,344 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:14:51,360 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:14:51,454 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:14:53,419 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:14:59,795 DEBUG chr10: 2946 peaks called 2025-01-31 10:15:01,242 DEBUG chr6: 3011 peaks called 2025-01-31 10:15:01,409 DEBUG chr8: 3139 peaks called 2025-01-31 10:15:01,485 DEBUG chr14: 2085 peaks called 2025-01-31 10:15:01,710 DEBUG chr7: 4246 peaks called 2025-01-31 10:15:02,164 DEBUG chr9: 3491 peaks called 2025-01-31 10:15:06,846 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:15:07,455 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:15:07,868 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:15:08,455 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:15:08,464 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:15:08,471 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:15:13,588 DEBUG chr17: 2907 peaks called 2025-01-31 10:15:14,024 DEBUG chr16: 1993 peaks called 2025-01-31 10:15:14,322 DEBUG chr11: 5212 peaks called 2025-01-31 10:15:14,818 DEBUG chr15: 2777 peaks called 2025-01-31 10:15:15,102 DEBUG chr13: 2979 peaks called 2025-01-31 10:15:15,337 DEBUG chr12: 2307 peaks called 2025-01-31 10:15:16,495 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:15:16,984 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:15:18,074 DEBUG chr19: 2195 peaks called 2025-01-31 10:15:19,260 DEBUG chr18: 1641 peaks called 2025-01-31 10:15:20,043 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:20,075 INFO There are 63116 peaks called at FDR=0.05 2025-01-31 10:15:21,615 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:15:21,615 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:15:25,041 DEBUG chr4: Calling hotspots 2025-01-31 10:15:25,181 DEBUG chr3: Calling hotspots 2025-01-31 10:15:25,280 DEBUG chr5: Calling hotspots 2025-01-31 10:15:25,586 DEBUG chrX: Calling hotspots 2025-01-31 10:15:25,968 DEBUG chr2: Calling hotspots 2025-01-31 10:15:26,111 DEBUG chr1: Calling hotspots 2025-01-31 10:15:34,532 DEBUG chr4: 3024 hotspots called 2025-01-31 10:15:35,060 DEBUG chr5: 2799 hotspots called 2025-01-31 10:15:35,077 DEBUG chr3: 2127 hotspots called 2025-01-31 10:15:36,881 DEBUG chrX: 1402 hotspots called 2025-01-31 10:15:37,622 DEBUG chr6: Calling hotspots 2025-01-31 10:15:38,244 DEBUG chr10: Calling hotspots 2025-01-31 10:15:38,283 DEBUG chr7: Calling hotspots 2025-01-31 10:15:38,815 DEBUG chr2: 3538 hotspots called 2025-01-31 10:15:39,695 DEBUG chr1: 2795 hotspots called 2025-01-31 10:15:39,922 DEBUG chr8: Calling hotspots 2025-01-31 10:15:42,002 DEBUG chr14: Calling hotspots 2025-01-31 10:15:42,671 DEBUG chr9: Calling hotspots 2025-01-31 10:15:48,317 DEBUG chr10: 2074 hotspots called 2025-01-31 10:15:48,662 DEBUG chr6: 2134 hotspots called 2025-01-31 10:15:48,782 DEBUG chr7: 2997 hotspots called 2025-01-31 10:15:49,171 DEBUG chr8: 2220 hotspots called 2025-01-31 10:15:49,845 DEBUG chr14: 1451 hotspots called 2025-01-31 10:15:50,322 DEBUG chr9: 2521 hotspots called 2025-01-31 10:15:50,650 DEBUG chr11: Calling hotspots 2025-01-31 10:15:50,748 DEBUG chr13: Calling hotspots 2025-01-31 10:15:51,225 DEBUG chr12: Calling hotspots 2025-01-31 10:15:51,339 DEBUG chr15: Calling hotspots 2025-01-31 10:15:51,847 DEBUG chr16: Calling hotspots 2025-01-31 10:15:52,104 DEBUG chr17: Calling hotspots 2025-01-31 10:15:57,510 DEBUG chr15: 1994 hotspots called 2025-01-31 10:15:57,570 DEBUG chr13: 2088 hotspots called 2025-01-31 10:15:57,638 DEBUG chr11: 3731 hotspots called 2025-01-31 10:15:57,787 DEBUG chr17: 2046 hotspots called 2025-01-31 10:15:58,016 DEBUG chr16: 1367 hotspots called 2025-01-31 10:15:58,089 DEBUG chr12: 1617 hotspots called 2025-01-31 10:15:58,674 DEBUG chr19: Calling hotspots 2025-01-31 10:15:58,831 DEBUG chr18: Calling hotspots 2025-01-31 10:16:02,160 DEBUG chr19: 1591 hotspots called 2025-01-31 10:16:04,082 DEBUG chr18: 1120 hotspots called 2025-01-31 10:16:04,603 DEBUG Results of call_hotspots emitted. 2025-01-31 10:16:04,638 INFO There are 44636 hotspots called at FDR=0.01 2025-01-31 10:16:06,851 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:16:06,852 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:16:17,063 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:16:17,174 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:16:17,251 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:16:17,642 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:16:18,585 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:16:18,978 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:16:27,976 DEBUG chr5: 3235 peaks called 2025-01-31 10:16:27,986 DEBUG chr4: 3466 peaks called 2025-01-31 10:16:28,414 DEBUG chr3: 2508 peaks called 2025-01-31 10:16:29,974 DEBUG chrX: 1572 peaks called 2025-01-31 10:16:29,993 DEBUG chr2: 4079 peaks called 2025-01-31 10:16:30,412 DEBUG chr1: 3262 peaks called 2025-01-31 10:16:35,588 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:16:35,681 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:16:36,306 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:16:37,252 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:16:37,343 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:16:37,982 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:16:46,811 DEBUG chr10: 2429 peaks called 2025-01-31 10:16:47,257 DEBUG chr7: 3547 peaks called 2025-01-31 10:16:47,843 DEBUG chr14: 1696 peaks called 2025-01-31 10:16:48,180 DEBUG chr8: 2593 peaks called 2025-01-31 10:16:48,195 DEBUG chr6: 2459 peaks called 2025-01-31 10:16:48,261 DEBUG chr9: 2909 peaks called 2025-01-31 10:16:53,842 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:16:53,894 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:16:54,239 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:16:54,292 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:16:54,668 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:16:54,908 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:16:58,809 DEBUG chr17: 2420 peaks called 2025-01-31 10:16:59,253 DEBUG chr16: 1605 peaks called 2025-01-31 10:17:00,753 DEBUG chr15: 2316 peaks called 2025-01-31 10:17:01,104 DEBUG chr13: 2461 peaks called 2025-01-31 10:17:01,320 DEBUG chr12: 1874 peaks called 2025-01-31 10:17:01,538 DEBUG chr11: 4414 peaks called 2025-01-31 10:17:02,813 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:17:02,907 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:17:04,414 DEBUG chr19: 1856 peaks called 2025-01-31 10:17:05,223 DEBUG chr18: 1301 peaks called 2025-01-31 10:17:06,099 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:17:06,133 INFO There are 52002 peaks called at FDR=0.01 2025-01-31 10:17:07,093 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:17:07,094 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:17:10,354 DEBUG chr5: Calling hotspots 2025-01-31 10:17:10,656 DEBUG chr4: Calling hotspots 2025-01-31 10:17:10,854 DEBUG chr3: Calling hotspots 2025-01-31 10:17:10,872 DEBUG chrX: Calling hotspots 2025-01-31 10:17:11,001 DEBUG chr2: Calling hotspots 2025-01-31 10:17:11,278 DEBUG chr1: Calling hotspots 2025-01-31 10:17:15,727 DEBUG chr5: 2332 hotspots called 2025-01-31 10:17:17,216 DEBUG chr3: 1774 hotspots called 2025-01-31 10:17:17,269 DEBUG chr4: 2550 hotspots called 2025-01-31 10:17:17,914 DEBUG chrX: 1025 hotspots called 2025-01-31 10:17:18,024 DEBUG chr2: 2974 hotspots called 2025-01-31 10:17:18,634 DEBUG chr6: Calling hotspots 2025-01-31 10:17:18,643 DEBUG chr1: 2309 hotspots called 2025-01-31 10:17:19,871 DEBUG chr10: Calling hotspots 2025-01-31 10:17:20,022 DEBUG chr7: Calling hotspots 2025-01-31 10:17:20,347 DEBUG chr8: Calling hotspots 2025-01-31 10:17:20,367 DEBUG chr14: Calling hotspots 2025-01-31 10:17:20,939 DEBUG chr9: Calling hotspots 2025-01-31 10:17:25,327 DEBUG chr6: 1801 hotspots called 2025-01-31 10:17:26,397 DEBUG chr14: 1193 hotspots called 2025-01-31 10:17:26,539 DEBUG chr10: 1732 hotspots called 2025-01-31 10:17:26,837 DEBUG chr8: 1879 hotspots called 2025-01-31 10:17:27,466 DEBUG chr11: Calling hotspots 2025-01-31 10:17:27,728 DEBUG chr7: 2548 hotspots called 2025-01-31 10:17:28,384 DEBUG chr9: 2119 hotspots called 2025-01-31 10:17:28,833 DEBUG chr12: Calling hotspots 2025-01-31 10:17:28,852 DEBUG chr13: Calling hotspots 2025-01-31 10:17:28,959 DEBUG chr15: Calling hotspots 2025-01-31 10:17:29,905 DEBUG chr16: Calling hotspots 2025-01-31 10:17:30,402 DEBUG chr17: Calling hotspots 2025-01-31 10:17:31,105 DEBUG chr11: 3137 hotspots called 2025-01-31 10:17:32,276 DEBUG chr15: 1678 hotspots called 2025-01-31 10:17:32,468 DEBUG chr13: 1717 hotspots called 2025-01-31 10:17:32,637 DEBUG chr18: Calling hotspots 2025-01-31 10:17:32,704 DEBUG chr12: 1325 hotspots called 2025-01-31 10:17:32,847 DEBUG chr17: 1745 hotspots called 2025-01-31 10:17:33,134 DEBUG chr16: 1120 hotspots called 2025-01-31 10:17:33,156 DEBUG chr19: Calling hotspots 2025-01-31 10:17:34,965 DEBUG chr18: 929 hotspots called 2025-01-31 10:17:34,985 DEBUG chr19: 1335 hotspots called 2025-01-31 10:17:35,233 DEBUG Results of call_hotspots emitted. 2025-01-31 10:17:35,265 INFO There are 37222 hotspots called at FDR=0.001 2025-01-31 10:17:37,082 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:17:37,082 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:17:46,518 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:17:47,005 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:17:47,131 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:17:47,215 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:17:47,694 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:17:48,266 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:17:57,961 DEBUG chr5: 2653 peaks called 2025-01-31 10:17:58,338 DEBUG chr4: 2888 peaks called 2025-01-31 10:17:58,980 DEBUG chr3: 2079 peaks called 2025-01-31 10:17:59,405 DEBUG chrX: 1175 peaks called 2025-01-31 10:18:01,275 DEBUG chr2: 3405 peaks called 2025-01-31 10:18:02,338 DEBUG chr1: 2702 peaks called 2025-01-31 10:18:05,068 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:18:05,420 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:18:05,906 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:18:06,154 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:18:07,290 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:18:08,470 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:18:13,373 DEBUG chr10: 2009 peaks called 2025-01-31 10:18:14,518 DEBUG chr8: 2170 peaks called 2025-01-31 10:18:14,953 DEBUG chr7: 2987 peaks called 2025-01-31 10:18:15,308 DEBUG chr14: 1374 peaks called 2025-01-31 10:18:16,908 DEBUG chr6: 2024 peaks called 2025-01-31 10:18:17,790 DEBUG chr9: 2405 peaks called 2025-01-31 10:18:20,051 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:18:20,879 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:18:20,911 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:18:21,599 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:18:21,883 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:18:22,405 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:18:28,519 DEBUG chr11: 3680 peaks called 2025-01-31 10:18:28,640 DEBUG chr15: 1934 peaks called 2025-01-31 10:18:28,905 DEBUG chr16: 1326 peaks called 2025-01-31 10:18:29,306 DEBUG chr13: 2023 peaks called 2025-01-31 10:18:29,346 DEBUG chr17: 2034 peaks called 2025-01-31 10:18:29,586 DEBUG chr12: 1525 peaks called 2025-01-31 10:18:30,896 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:18:31,456 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:18:34,399 DEBUG chr19: 1542 peaks called 2025-01-31 10:18:36,580 DEBUG chr18: 1071 peaks called 2025-01-31 10:18:37,035 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:18:37,067 INFO There are 43006 peaks called at FDR=0.001 2025-01-31 10:18:37,903 INFO Saving density 2025-01-31 10:18:37,904 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:18:56,617 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:19:02,859 DEBUG Converting density to bigwig 2025-01-31 10:20:05,651 INFO Program finished